Query 046314
Match_columns 1137
No_of_seqs 1010 out of 5880
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 10:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5E-149 1E-153 1449.7 91.5 1035 1-1137 1-1090(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 3.2E-56 6.9E-61 548.3 30.7 645 188-920 161-848 (889)
3 PLN03194 putative disease resi 100.0 1.1E-43 2.5E-48 345.2 16.0 156 2-174 19-177 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 7.9E-36 1.7E-40 334.4 13.5 267 190-462 1-282 (287)
5 PLN00113 leucine-rich repeat r 100.0 3.1E-29 6.6E-34 328.4 22.9 395 503-912 42-486 (968)
6 PLN00113 leucine-rich repeat r 100.0 1.3E-27 2.9E-32 312.9 21.7 365 545-913 109-511 (968)
7 KOG4194 Membrane glycoprotein 99.9 1E-26 2.2E-31 256.3 4.1 347 534-908 82-446 (873)
8 KOG0444 Cytoskeletal regulator 99.9 8.2E-27 1.8E-31 257.6 -6.4 297 580-898 68-380 (1255)
9 KOG4194 Membrane glycoprotein 99.9 7.4E-25 1.6E-29 241.6 4.1 350 532-911 54-426 (873)
10 PLN03210 Resistant to P. syrin 99.9 7.7E-23 1.7E-27 267.7 23.6 311 549-897 583-910 (1153)
11 KOG0444 Cytoskeletal regulator 99.9 2.1E-25 4.6E-30 246.5 -3.0 298 550-873 74-378 (1255)
12 KOG0472 Leucine-rich repeat pr 99.9 2.4E-24 5.1E-29 228.2 -8.0 248 548-817 62-314 (565)
13 KOG0472 Leucine-rich repeat pr 99.9 1.3E-23 2.8E-28 222.6 -5.4 317 535-873 165-543 (565)
14 KOG0618 Serine/threonine phosp 99.8 4.9E-23 1.1E-27 239.7 -5.0 319 547-886 38-436 (1081)
15 PF01582 TIR: TIR domain; Int 99.8 2E-21 4.2E-26 191.7 3.4 132 12-143 1-140 (141)
16 smart00255 TIR Toll - interleu 99.8 5.9E-19 1.3E-23 174.6 12.0 136 9-146 1-138 (140)
17 PRK15387 E3 ubiquitin-protein 99.8 2.4E-18 5.3E-23 208.7 16.1 259 554-871 201-459 (788)
18 PRK15387 E3 ubiquitin-protein 99.8 3.5E-18 7.7E-23 207.3 16.4 254 535-848 206-459 (788)
19 PRK15370 E3 ubiquitin-protein 99.7 3.5E-17 7.6E-22 200.3 11.9 227 590-870 198-428 (754)
20 KOG0618 Serine/threonine phosp 99.7 8.1E-19 1.7E-23 204.9 -2.7 259 591-868 219-487 (1081)
21 PRK15370 E3 ubiquitin-protein 99.7 4.7E-16 1E-20 190.5 13.9 247 534-848 182-429 (754)
22 KOG0617 Ras suppressor protein 99.5 6.9E-16 1.5E-20 146.0 -4.4 156 639-873 34-189 (264)
23 PF13676 TIR_2: TIR domain; PD 99.5 1.9E-14 4E-19 133.6 4.0 91 12-110 1-91 (102)
24 KOG0617 Ras suppressor protein 99.5 1.5E-15 3.3E-20 143.7 -3.9 166 731-914 35-203 (264)
25 KOG4237 Extracellular matrix p 99.5 1.7E-15 3.6E-20 161.6 -5.2 265 534-812 71-358 (498)
26 PRK04841 transcriptional regul 99.4 7.8E-12 1.7E-16 163.5 26.7 295 179-500 8-335 (903)
27 KOG4237 Extracellular matrix p 99.4 1.2E-14 2.6E-19 155.3 -1.3 272 587-870 63-359 (498)
28 cd00116 LRR_RI Leucine-rich re 99.4 5.6E-14 1.2E-18 160.3 1.6 272 596-890 3-317 (319)
29 cd00116 LRR_RI Leucine-rich re 99.3 1.6E-13 3.5E-18 156.4 -1.3 256 592-869 24-319 (319)
30 TIGR00635 ruvB Holliday juncti 99.2 3.6E-10 7.8E-15 127.6 15.6 270 185-479 4-289 (305)
31 PRK00411 cdc6 cell division co 99.2 6.9E-09 1.5E-13 121.8 26.5 286 180-479 25-358 (394)
32 PRK00080 ruvB Holliday junctio 99.1 2.7E-10 5.8E-15 129.4 12.7 262 180-479 20-310 (328)
33 COG3899 Predicted ATPase [Gene 99.1 2E-09 4.2E-14 135.4 19.8 327 186-525 1-406 (849)
34 TIGR02928 orc1/cdc6 family rep 99.1 3.9E-08 8.4E-13 114.3 26.7 287 180-479 10-350 (365)
35 KOG4658 Apoptotic ATPase [Sign 99.0 8.2E-11 1.8E-15 146.9 3.8 251 591-918 523-787 (889)
36 PF01637 Arch_ATPase: Archaeal 99.0 4.8E-10 1E-14 121.5 9.1 197 187-389 1-233 (234)
37 KOG0532 Leucine-rich repeat (L 99.0 2.3E-11 5E-16 136.1 -2.4 190 642-891 79-271 (722)
38 COG2909 MalT ATP-dependent tra 99.0 2.4E-08 5.2E-13 118.4 21.0 296 179-501 13-342 (894)
39 TIGR03015 pepcterm_ATPase puta 99.0 1.3E-08 2.8E-13 112.9 17.7 180 208-394 43-242 (269)
40 PF05729 NACHT: NACHT domain 99.0 6.2E-09 1.3E-13 106.1 12.8 146 209-359 1-163 (166)
41 KOG1259 Nischarin, modulator o 98.9 3.4E-10 7.4E-15 116.9 1.9 129 730-873 285-415 (490)
42 COG4886 Leucine-rich repeat (L 98.8 1.1E-08 2.5E-13 120.1 8.2 196 617-873 97-293 (394)
43 PRK06893 DNA replication initi 98.7 1.3E-07 2.8E-12 101.3 14.3 150 208-390 39-203 (229)
44 PF14580 LRR_9: Leucine-rich r 98.7 3.7E-09 8E-14 106.4 2.0 59 832-891 62-124 (175)
45 KOG1259 Nischarin, modulator o 98.7 3.1E-09 6.7E-14 110.0 1.3 56 833-889 328-383 (490)
46 COG2256 MGS1 ATPase related to 98.7 1.4E-07 3E-12 103.2 13.6 174 181-384 20-206 (436)
47 KOG3207 Beta-tubulin folding c 98.7 1.8E-09 4E-14 117.8 -0.8 199 637-888 120-334 (505)
48 KOG3207 Beta-tubulin folding c 98.7 1.6E-09 3.5E-14 118.2 -1.4 177 591-788 146-338 (505)
49 KOG0532 Leucine-rich repeat (L 98.7 1.2E-09 2.5E-14 122.8 -2.7 181 613-821 75-255 (722)
50 PRK13342 recombination factor 98.7 6.9E-07 1.5E-11 104.7 18.7 179 181-390 8-196 (413)
51 PTZ00112 origin recognition co 98.6 4.8E-07 1E-11 108.2 15.7 246 180-442 750-1031(1164)
52 COG4886 Leucine-rich repeat (L 98.6 3.9E-08 8.5E-13 115.6 6.2 177 591-793 116-294 (394)
53 PF14580 LRR_9: Leucine-rich r 98.6 2.6E-08 5.7E-13 100.2 4.0 92 600-695 6-98 (175)
54 PRK15386 type III secretion pr 98.6 1.5E-07 3.3E-12 105.7 10.0 59 730-793 53-111 (426)
55 COG3903 Predicted ATPase [Gene 98.6 5.6E-08 1.2E-12 107.1 5.2 281 207-499 13-316 (414)
56 PRK14961 DNA polymerase III su 98.5 2.6E-06 5.7E-11 98.0 18.8 181 181-386 12-216 (363)
57 PRK14949 DNA polymerase III su 98.5 2.9E-06 6.3E-11 103.6 19.6 189 181-389 12-220 (944)
58 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.5E-06 3.3E-11 93.5 15.2 175 184-393 14-204 (226)
59 PRK14963 DNA polymerase III su 98.5 4.4E-06 9.5E-11 99.2 19.6 195 180-386 9-213 (504)
60 PRK07003 DNA polymerase III su 98.5 4.6E-06 9.9E-11 99.9 19.4 186 180-389 11-220 (830)
61 PRK12402 replication factor C 98.5 4.3E-06 9.3E-11 96.1 19.1 198 180-387 10-223 (337)
62 PRK07471 DNA polymerase III su 98.5 8.7E-06 1.9E-10 92.8 20.8 201 180-390 14-238 (365)
63 PRK14960 DNA polymerase III su 98.5 3E-06 6.5E-11 100.4 17.3 183 180-386 10-215 (702)
64 PF05496 RuvB_N: Holliday junc 98.5 1.9E-06 4.2E-11 88.5 13.0 179 180-390 19-221 (233)
65 PRK14957 DNA polymerase III su 98.4 6.2E-06 1.4E-10 97.9 18.0 185 181-390 12-221 (546)
66 PRK12323 DNA polymerase III su 98.4 9.8E-06 2.1E-10 95.9 19.1 183 180-387 11-222 (700)
67 PRK14962 DNA polymerase III su 98.4 6E-06 1.3E-10 97.2 17.4 188 180-392 9-221 (472)
68 PRK14956 DNA polymerase III su 98.4 5E-06 1.1E-10 96.0 15.9 189 180-385 13-217 (484)
69 KOG0531 Protein phosphatase 1, 98.4 4.5E-08 9.8E-13 115.2 -0.8 144 731-891 142-288 (414)
70 PRK15386 type III secretion pr 98.4 1.1E-06 2.3E-11 99.1 10.1 71 707-786 51-122 (426)
71 KOG3678 SARM protein (with ste 98.4 1.2E-06 2.5E-11 95.8 9.9 90 7-102 610-708 (832)
72 PTZ00202 tuzin; Provisional 98.4 8E-06 1.7E-10 91.2 16.5 210 136-359 194-434 (550)
73 PRK00440 rfc replication facto 98.4 7.2E-06 1.6E-10 93.4 17.1 184 181-386 13-199 (319)
74 KOG1909 Ran GTPase-activating 98.4 2E-08 4.4E-13 107.1 -3.6 39 635-673 89-132 (382)
75 PRK04195 replication factor C 98.4 8.4E-06 1.8E-10 97.6 18.0 182 180-388 9-200 (482)
76 PF13173 AAA_14: AAA domain 98.4 1.6E-06 3.5E-11 83.8 9.5 122 208-351 2-127 (128)
77 PLN03025 replication factor C 98.4 1.3E-05 2.9E-10 90.7 18.3 183 180-384 8-194 (319)
78 PRK08691 DNA polymerase III su 98.4 1.4E-05 3.1E-10 95.7 19.0 182 180-386 11-216 (709)
79 PRK06645 DNA polymerase III su 98.4 9.7E-06 2.1E-10 95.7 17.4 186 180-385 16-224 (507)
80 TIGR01242 26Sp45 26S proteasom 98.3 3.4E-06 7.4E-11 97.4 12.8 173 183-384 120-328 (364)
81 PRK08727 hypothetical protein; 98.3 1.5E-05 3.3E-10 85.6 16.5 168 184-386 18-200 (233)
82 PRK07940 DNA polymerase III su 98.3 1.7E-05 3.7E-10 91.2 17.6 179 184-390 4-213 (394)
83 PRK07994 DNA polymerase III su 98.3 1.1E-05 2.3E-10 97.4 16.6 183 180-387 11-217 (647)
84 PRK14964 DNA polymerase III su 98.3 1.4E-05 3.1E-10 93.5 16.9 181 180-385 8-212 (491)
85 PRK05564 DNA polymerase III su 98.3 1.5E-05 3.3E-10 90.0 16.7 178 185-390 4-190 (313)
86 cd00009 AAA The AAA+ (ATPases 98.3 6.8E-06 1.5E-10 81.5 12.4 123 188-328 1-131 (151)
87 PRK14951 DNA polymerase III su 98.3 4.6E-05 1E-09 91.9 21.4 195 180-387 11-222 (618)
88 TIGR02397 dnaX_nterm DNA polym 98.3 2.5E-05 5.4E-10 90.4 18.4 186 180-390 9-218 (355)
89 KOG1909 Ran GTPase-activating 98.3 4.4E-08 9.6E-13 104.6 -4.1 136 748-891 153-309 (382)
90 PRK08903 DnaA regulatory inact 98.3 9.4E-06 2E-10 87.3 13.6 176 183-394 16-203 (227)
91 KOG2120 SCF ubiquitin ligase, 98.3 3.1E-08 6.8E-13 102.9 -5.3 159 614-789 186-351 (419)
92 PLN03150 hypothetical protein; 98.2 1.5E-06 3.2E-11 107.2 7.7 59 754-812 420-478 (623)
93 PF13401 AAA_22: AAA domain; P 98.2 2.2E-06 4.7E-11 83.5 7.4 113 207-326 3-125 (131)
94 PRK09112 DNA polymerase III su 98.2 1.5E-05 3.2E-10 90.4 14.8 197 180-390 18-240 (351)
95 KOG2028 ATPase related to the 98.2 5.4E-06 1.2E-10 88.8 10.4 152 181-358 134-293 (554)
96 PRK14958 DNA polymerase III su 98.2 5.1E-05 1.1E-09 90.5 19.9 182 180-386 11-216 (509)
97 PRK05896 DNA polymerase III su 98.2 2.3E-05 4.9E-10 93.2 16.5 186 180-390 11-221 (605)
98 TIGR00678 holB DNA polymerase 98.2 3.3E-05 7.1E-10 80.4 16.0 150 208-386 14-187 (188)
99 COG1474 CDC6 Cdc6-related prot 98.2 8.4E-05 1.8E-09 84.6 20.0 287 180-479 12-334 (366)
100 PRK14959 DNA polymerase III su 98.2 4.1E-05 8.8E-10 91.6 18.1 190 180-394 11-225 (624)
101 PRK13341 recombination factor 98.2 2E-05 4.2E-10 97.3 15.6 172 181-384 24-211 (725)
102 PF13191 AAA_16: AAA ATPase do 98.2 2.5E-06 5.3E-11 88.7 6.5 50 186-235 1-51 (185)
103 PRK08084 DNA replication initi 98.2 4.2E-05 9E-10 82.4 15.9 170 185-389 22-208 (235)
104 PRK14952 DNA polymerase III su 98.2 9.2E-05 2E-09 89.0 20.3 191 181-391 9-221 (584)
105 PRK05642 DNA replication initi 98.1 5E-05 1.1E-09 81.6 16.0 150 208-390 45-208 (234)
106 PRK14955 DNA polymerase III su 98.1 3.2E-05 7E-10 90.1 15.5 198 180-385 11-223 (397)
107 PLN03150 hypothetical protein; 98.1 4E-06 8.8E-11 103.3 8.0 90 730-819 419-510 (623)
108 KOG2120 SCF ubiquitin ligase, 98.1 9E-08 1.9E-12 99.6 -5.5 174 730-916 186-378 (419)
109 PRK14969 DNA polymerase III su 98.1 2.9E-05 6.2E-10 93.2 14.7 180 181-385 12-215 (527)
110 PRK09087 hypothetical protein; 98.1 8E-05 1.7E-09 79.4 16.2 138 208-389 44-194 (226)
111 KOG1859 Leucine-rich repeat pr 98.1 3.7E-08 8E-13 113.5 -9.9 128 730-873 165-295 (1096)
112 PRK09111 DNA polymerase III su 98.1 8E-05 1.7E-09 90.1 17.6 197 180-388 19-231 (598)
113 PF13855 LRR_8: Leucine rich r 98.1 3.8E-06 8.3E-11 69.3 4.3 58 730-787 2-60 (61)
114 PRK03992 proteasome-activating 98.1 2.8E-05 6.1E-10 90.2 12.9 172 183-383 129-336 (389)
115 PF00308 Bac_DnaA: Bacterial d 98.1 7.2E-05 1.6E-09 79.4 14.9 156 208-387 34-205 (219)
116 PRK14970 DNA polymerase III su 98.1 7.5E-05 1.6E-09 86.6 16.4 182 180-385 12-204 (367)
117 COG2255 RuvB Holliday junction 98.1 0.00013 2.8E-09 76.6 15.9 262 180-483 21-316 (332)
118 PHA02544 44 clamp loader, smal 98.1 5.9E-05 1.3E-09 85.7 15.0 153 180-357 16-171 (316)
119 PRK14954 DNA polymerase III su 98.0 0.0002 4.3E-09 86.8 19.9 198 180-385 11-223 (620)
120 PRK06305 DNA polymerase III su 98.0 0.00015 3.2E-09 85.5 18.3 187 180-389 12-222 (451)
121 PRK07764 DNA polymerase III su 98.0 0.00011 2.4E-09 91.8 17.8 181 180-385 10-216 (824)
122 PRK07133 DNA polymerase III su 98.0 0.00015 3.3E-09 88.0 17.8 191 180-390 13-220 (725)
123 PRK14950 DNA polymerase III su 98.0 0.00015 3.2E-09 88.7 17.8 198 180-390 11-221 (585)
124 PRK14953 DNA polymerase III su 98.0 0.0002 4.4E-09 84.9 18.3 184 180-388 11-218 (486)
125 PF13855 LRR_8: Leucine rich r 98.0 5.5E-06 1.2E-10 68.4 3.6 60 752-811 1-60 (61)
126 PRK08451 DNA polymerase III su 98.0 0.00018 3.8E-09 85.3 17.4 188 180-387 9-215 (535)
127 TIGR02903 spore_lon_C ATP-depe 98.0 0.00015 3.2E-09 88.8 17.5 50 181-232 150-199 (615)
128 KOG0531 Protein phosphatase 1, 98.0 2.2E-06 4.7E-11 101.1 1.0 168 591-764 95-267 (414)
129 PRK14087 dnaA chromosomal repl 97.9 0.00014 3.1E-09 85.6 15.4 164 209-392 142-321 (450)
130 TIGR02639 ClpA ATP-dependent C 97.9 0.00011 2.4E-09 92.5 15.2 170 161-359 163-358 (731)
131 KOG1859 Leucine-rich repeat pr 97.9 9.7E-07 2.1E-11 102.2 -3.0 126 639-788 165-291 (1096)
132 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 61.0 3.6 42 834-875 1-42 (44)
133 PRK14948 DNA polymerase III su 97.9 0.00036 7.7E-09 85.2 18.5 197 180-389 11-221 (620)
134 PRK06647 DNA polymerase III su 97.9 0.00034 7.5E-09 84.3 17.9 188 180-387 11-217 (563)
135 KOG0989 Replication factor C, 97.9 0.0006 1.3E-08 72.5 17.2 188 180-384 31-224 (346)
136 TIGR03689 pup_AAA proteasome A 97.9 0.00034 7.3E-09 82.5 17.2 158 183-359 180-378 (512)
137 TIGR02881 spore_V_K stage V sp 97.9 0.00013 2.7E-09 80.2 13.0 153 186-361 7-193 (261)
138 KOG2543 Origin recognition com 97.9 0.00048 1.1E-08 75.3 16.5 169 183-359 4-193 (438)
139 KOG2227 Pre-initiation complex 97.8 0.00042 9.1E-09 77.7 16.2 209 180-393 145-375 (529)
140 PRK06620 hypothetical protein; 97.8 0.00022 4.7E-09 75.4 13.6 131 209-385 45-184 (214)
141 PRK14971 DNA polymerase III su 97.8 0.0011 2.4E-08 81.0 21.4 180 180-385 12-217 (614)
142 KOG2982 Uncharacterized conser 97.8 1.3E-05 2.8E-10 83.9 3.8 197 593-790 47-263 (418)
143 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00043 9.2E-09 87.9 18.1 171 161-358 168-362 (852)
144 PF05673 DUF815: Protein of un 97.8 0.0014 3.1E-08 68.7 18.6 56 181-236 23-80 (249)
145 PF14516 AAA_35: AAA-like doma 97.8 0.004 8.7E-08 70.7 23.9 280 180-487 6-322 (331)
146 PTZ00361 26 proteosome regulat 97.8 7.3E-05 1.6E-09 86.8 9.4 154 184-362 182-370 (438)
147 PRK14088 dnaA chromosomal repl 97.8 0.00066 1.4E-08 80.0 17.3 160 208-388 130-303 (440)
148 PRK05563 DNA polymerase III su 97.8 0.0007 1.5E-08 82.0 17.8 191 180-385 11-215 (559)
149 PRK14965 DNA polymerase III su 97.7 0.00039 8.5E-09 84.6 15.4 186 180-390 11-221 (576)
150 PTZ00454 26S protease regulato 97.7 0.00036 7.8E-09 80.6 14.1 174 183-384 143-351 (398)
151 TIGR00362 DnaA chromosomal rep 97.7 0.00066 1.4E-08 79.8 16.4 159 208-388 136-308 (405)
152 PF08937 DUF1863: MTH538 TIR-l 97.7 5.2E-05 1.1E-09 73.4 5.9 87 10-102 1-106 (130)
153 PRK10865 protein disaggregatio 97.7 0.00095 2.1E-08 85.1 18.8 173 161-359 159-354 (857)
154 PRK05707 DNA polymerase III su 97.7 0.00097 2.1E-08 75.1 16.8 95 288-390 106-203 (328)
155 PRK09376 rho transcription ter 97.7 5.6E-05 1.2E-09 84.5 6.7 94 207-303 168-270 (416)
156 PRK00149 dnaA chromosomal repl 97.7 0.00062 1.4E-08 81.0 15.9 156 208-387 148-319 (450)
157 KOG4341 F-box protein containi 97.7 9.9E-07 2.2E-11 96.4 -7.2 86 614-699 139-230 (483)
158 PRK07399 DNA polymerase III su 97.7 0.0015 3.2E-08 73.3 17.4 193 185-390 4-221 (314)
159 TIGR03346 chaperone_ClpB ATP-d 97.6 0.0019 4.1E-08 82.8 20.1 173 162-359 155-349 (852)
160 PRK12422 chromosomal replicati 97.6 0.0012 2.6E-08 77.6 16.7 153 209-383 142-306 (445)
161 cd01128 rho_factor Transcripti 97.6 7.2E-05 1.6E-09 80.5 5.8 94 207-303 15-117 (249)
162 PRK07952 DNA replication prote 97.6 0.0017 3.7E-08 69.6 16.2 36 208-243 99-134 (244)
163 TIGR02880 cbbX_cfxQ probable R 97.6 0.0012 2.7E-08 73.0 15.5 131 210-361 60-210 (284)
164 CHL00195 ycf46 Ycf46; Provisio 97.6 0.0054 1.2E-07 72.6 21.2 153 184-361 227-407 (489)
165 CHL00095 clpC Clp protease ATP 97.6 0.00041 8.9E-09 88.5 12.6 169 161-357 160-352 (821)
166 KOG2982 Uncharacterized conser 97.5 3.1E-05 6.6E-10 81.2 1.5 65 833-898 198-267 (418)
167 CHL00176 ftsH cell division pr 97.5 0.00075 1.6E-08 82.5 13.6 173 183-382 181-386 (638)
168 PRK14086 dnaA chromosomal repl 97.5 0.0019 4.1E-08 77.3 16.5 152 209-384 315-482 (617)
169 TIGR00767 rho transcription te 97.5 0.00023 5E-09 80.2 8.0 94 207-303 167-269 (415)
170 PRK12377 putative replication 97.5 0.0026 5.7E-08 68.4 15.7 36 208-243 101-136 (248)
171 KOG4579 Leucine-rich repeat (L 97.5 8E-06 1.7E-10 75.9 -3.0 102 778-890 29-133 (177)
172 CHL00181 cbbX CbbX; Provisiona 97.5 0.0027 5.8E-08 70.3 16.1 131 209-361 60-211 (287)
173 KOG4341 F-box protein containi 97.5 7.5E-06 1.6E-10 89.7 -4.0 254 591-869 164-438 (483)
174 PRK11034 clpA ATP-dependent Cl 97.5 0.00064 1.4E-08 84.6 12.1 65 162-233 168-232 (758)
175 TIGR01241 FtsH_fam ATP-depende 97.4 0.0011 2.3E-08 80.1 13.1 174 183-383 53-259 (495)
176 PRK08058 DNA polymerase III su 97.4 0.0037 8E-08 70.9 16.1 151 186-358 6-181 (329)
177 COG1222 RPT1 ATP-dependent 26S 97.4 0.00096 2.1E-08 72.6 10.5 171 185-384 151-357 (406)
178 PRK08769 DNA polymerase III su 97.4 0.0056 1.2E-07 68.3 16.8 95 288-391 112-209 (319)
179 PRK08116 hypothetical protein; 97.3 0.00056 1.2E-08 74.9 8.4 101 209-326 115-220 (268)
180 PF00004 AAA: ATPase family as 97.3 0.0015 3.3E-08 63.3 10.5 23 211-233 1-23 (132)
181 COG1373 Predicted ATPase (AAA+ 97.3 0.0031 6.7E-08 73.3 14.4 165 192-390 24-192 (398)
182 PF05621 TniB: Bacterial TniB 97.3 0.0068 1.5E-07 65.8 15.2 187 193-389 45-260 (302)
183 TIGR01243 CDC48 AAA family ATP 97.2 0.0019 4.1E-08 81.8 12.8 173 184-384 177-381 (733)
184 TIGR03346 chaperone_ClpB ATP-d 97.2 0.014 3.1E-07 74.9 20.8 52 184-235 564-622 (852)
185 PLN00020 ribulose bisphosphate 97.2 0.007 1.5E-07 67.2 15.0 154 206-385 146-333 (413)
186 smart00382 AAA ATPases associa 97.2 0.00073 1.6E-08 66.2 6.9 34 209-242 3-36 (148)
187 PRK06090 DNA polymerase III su 97.2 0.02 4.4E-07 63.9 18.9 92 288-390 107-201 (319)
188 COG0593 DnaA ATPase involved i 97.2 0.0044 9.5E-08 70.6 13.6 134 207-361 112-259 (408)
189 TIGR01243 CDC48 AAA family ATP 97.1 0.0043 9.3E-08 78.6 14.1 173 184-384 452-657 (733)
190 TIGR00602 rad24 checkpoint pro 97.1 0.0049 1.1E-07 74.8 13.8 54 180-233 79-135 (637)
191 PRK10536 hypothetical protein; 97.1 0.0028 6.1E-08 67.4 10.1 135 184-326 54-212 (262)
192 PRK06871 DNA polymerase III su 97.1 0.022 4.8E-07 63.8 17.7 92 288-387 106-200 (325)
193 PRK07993 DNA polymerase III su 97.1 0.016 3.4E-07 65.6 16.8 93 288-388 107-202 (334)
194 TIGR00763 lon ATP-dependent pr 97.1 0.0092 2E-07 75.8 16.6 52 185-236 320-375 (775)
195 TIGR02639 ClpA ATP-dependent C 97.0 0.017 3.8E-07 72.9 18.5 50 184-233 453-509 (731)
196 KOG0730 AAA+-type ATPase [Post 97.0 0.0085 1.8E-07 70.4 14.2 161 185-373 434-630 (693)
197 PF01695 IstB_IS21: IstB-like 97.0 0.00059 1.3E-08 69.8 4.2 36 208-243 47-82 (178)
198 COG3267 ExeA Type II secretory 97.0 0.02 4.3E-07 60.0 15.1 180 206-392 49-247 (269)
199 PRK10865 protein disaggregatio 97.0 0.0092 2E-07 76.2 15.6 52 184-235 567-625 (857)
200 PRK09183 transposase/IS protei 97.0 0.0063 1.4E-07 66.4 12.2 35 208-242 102-136 (259)
201 PF12799 LRR_4: Leucine Rich r 97.0 0.00082 1.8E-08 50.9 3.7 36 730-765 2-37 (44)
202 KOG1644 U2-associated snRNP A' 97.0 0.00099 2.1E-08 66.7 5.2 86 795-891 59-151 (233)
203 PRK08181 transposase; Validate 97.0 0.0012 2.5E-08 72.0 6.1 35 209-243 107-141 (269)
204 KOG4579 Leucine-rich repeat (L 96.9 7E-05 1.5E-09 69.8 -3.0 89 773-873 50-139 (177)
205 TIGR02640 gas_vesic_GvpN gas v 96.9 0.011 2.4E-07 64.9 13.6 26 209-234 22-47 (262)
206 KOG3665 ZYG-1-like serine/thre 96.9 0.00022 4.8E-09 87.8 0.2 106 707-813 147-263 (699)
207 PF13177 DNA_pol3_delta2: DNA 96.9 0.0069 1.5E-07 61.0 10.8 139 189-347 1-162 (162)
208 KOG0991 Replication factor C, 96.9 0.0077 1.7E-07 61.4 10.6 76 180-261 22-98 (333)
209 cd01131 PilT Pilus retraction 96.9 0.0037 8E-08 65.4 9.0 110 209-330 2-112 (198)
210 PRK04132 replication factor C 96.9 0.028 6.1E-07 70.3 18.0 150 216-387 574-728 (846)
211 PRK06964 DNA polymerase III su 96.9 0.032 6.9E-07 63.0 16.6 92 288-390 131-225 (342)
212 PF08357 SEFIR: SEFIR domain; 96.9 0.0012 2.5E-08 65.9 4.7 63 12-74 3-70 (150)
213 PRK11331 5-methylcytosine-spec 96.9 0.0022 4.9E-08 73.6 7.5 106 184-302 174-285 (459)
214 KOG1514 Origin recognition com 96.9 0.028 6.1E-07 66.6 16.4 200 180-393 391-624 (767)
215 PRK06526 transposase; Provisio 96.8 0.0013 2.9E-08 71.2 5.1 34 208-241 98-131 (254)
216 KOG1644 U2-associated snRNP A' 96.8 0.002 4.4E-08 64.5 5.8 34 639-673 43-76 (233)
217 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0073 1.6E-07 76.9 12.3 52 184-235 565-623 (852)
218 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0025 5.5E-08 68.8 6.9 94 207-303 68-177 (274)
219 PRK00771 signal recognition pa 96.8 0.049 1.1E-06 63.6 17.9 87 134-235 26-122 (437)
220 PRK06921 hypothetical protein; 96.7 0.0024 5.3E-08 69.8 6.5 36 208-243 117-153 (266)
221 KOG0741 AAA+-type ATPase [Post 96.7 0.012 2.7E-07 66.9 11.9 132 206-358 536-685 (744)
222 PRK07261 topology modulation p 96.7 0.0051 1.1E-07 62.6 8.2 23 210-232 2-24 (171)
223 CHL00095 clpC Clp protease ATP 96.7 0.017 3.6E-07 74.0 14.7 119 184-312 508-636 (821)
224 COG1223 Predicted ATPase (AAA+ 96.7 0.012 2.6E-07 61.1 10.4 172 184-383 120-318 (368)
225 COG0470 HolB ATPase involved i 96.7 0.019 4.2E-07 65.4 13.7 146 186-352 2-174 (325)
226 COG0542 clpA ATP-binding subun 96.7 0.013 2.9E-07 71.6 12.5 118 184-312 490-618 (786)
227 PRK08699 DNA polymerase III su 96.6 0.012 2.7E-07 66.2 11.4 84 292-386 116-202 (325)
228 PRK11889 flhF flagellar biosyn 96.6 0.027 5.8E-07 63.6 13.6 36 207-242 240-275 (436)
229 PRK08118 topology modulation p 96.6 0.0053 1.2E-07 62.2 7.5 32 210-241 3-37 (167)
230 COG2812 DnaX DNA polymerase II 96.6 0.066 1.4E-06 63.1 17.3 188 181-383 12-213 (515)
231 PF02562 PhoH: PhoH-like prote 96.6 0.0044 9.6E-08 64.2 6.9 122 190-326 5-155 (205)
232 KOG3665 ZYG-1-like serine/thre 96.6 0.00086 1.9E-08 82.7 2.0 131 730-871 123-264 (699)
233 COG0542 clpA ATP-binding subun 96.6 0.041 9E-07 67.4 16.0 50 183-234 168-217 (786)
234 PF10443 RNA12: RNA12 protein; 96.6 0.29 6.2E-06 55.9 21.3 106 289-395 148-283 (431)
235 COG5238 RNA1 Ran GTPase-activa 96.6 0.00094 2E-08 69.5 1.6 188 591-789 30-255 (388)
236 PRK11034 clpA ATP-dependent Cl 96.6 0.032 6.9E-07 69.8 15.1 50 184-233 457-513 (758)
237 PRK06835 DNA replication prote 96.5 0.0064 1.4E-07 68.4 8.0 35 209-243 184-218 (329)
238 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0025 5.4E-08 71.3 4.3 49 185-233 51-103 (361)
239 KOG0731 AAA+-type ATPase conta 96.5 0.045 9.7E-07 66.6 15.0 178 182-386 308-520 (774)
240 PRK10787 DNA-binding ATP-depen 96.5 0.044 9.5E-07 69.1 15.6 52 185-236 322-377 (784)
241 COG5238 RNA1 Ran GTPase-activa 96.4 0.0012 2.7E-08 68.6 1.5 86 798-890 155-252 (388)
242 PF04665 Pox_A32: Poxvirus A32 96.4 0.016 3.5E-07 61.5 9.8 35 209-243 14-48 (241)
243 TIGR02902 spore_lonB ATP-depen 96.4 0.035 7.5E-07 67.2 13.8 50 181-232 61-110 (531)
244 cd01120 RecA-like_NTPases RecA 96.4 0.02 4.4E-07 57.6 10.0 34 210-243 1-34 (165)
245 PRK12608 transcription termina 96.3 0.011 2.3E-07 66.6 8.3 93 208-303 133-234 (380)
246 KOG0744 AAA+-type ATPase [Post 96.3 0.015 3.2E-07 62.5 8.6 36 208-243 177-216 (423)
247 PF07728 AAA_5: AAA domain (dy 96.3 0.0027 5.8E-08 62.3 3.1 22 211-232 2-23 (139)
248 PF13207 AAA_17: AAA domain; P 96.3 0.0032 7E-08 60.0 3.5 23 210-232 1-23 (121)
249 KOG0735 AAA+-type ATPase [Post 96.3 0.031 6.8E-07 66.0 11.9 74 208-299 431-504 (952)
250 KOG2739 Leucine-rich acidic nu 96.3 0.0027 6E-08 66.4 3.0 83 830-913 61-155 (260)
251 PRK14974 cell division protein 96.3 0.11 2.5E-06 58.4 15.9 29 207-235 139-167 (336)
252 PRK10733 hflB ATP-dependent me 96.3 0.026 5.6E-07 70.0 11.9 152 186-361 153-337 (644)
253 KOG0733 Nuclear AAA ATPase (VC 96.2 0.034 7.3E-07 64.7 11.6 53 184-236 189-251 (802)
254 COG1484 DnaC DNA replication p 96.2 0.013 2.7E-07 63.7 8.0 36 207-242 104-139 (254)
255 PRK10867 signal recognition pa 96.2 0.053 1.2E-06 63.1 13.5 29 207-235 99-127 (433)
256 PRK11608 pspF phage shock prot 96.2 0.065 1.4E-06 60.8 14.0 48 184-231 5-52 (326)
257 TIGR01817 nifA Nif-specific re 96.2 0.058 1.3E-06 65.9 14.6 51 183-233 194-244 (534)
258 PF14532 Sigma54_activ_2: Sigm 96.2 0.0066 1.4E-07 59.5 5.2 47 188-234 1-47 (138)
259 COG2607 Predicted ATPase (AAA+ 96.2 0.041 8.8E-07 56.9 10.5 118 183-327 58-183 (287)
260 TIGR02974 phageshock_pspF psp 96.2 0.062 1.3E-06 60.9 13.4 46 187-232 1-46 (329)
261 PRK12724 flagellar biosynthesi 96.1 0.14 3.1E-06 58.7 15.8 25 208-232 223-247 (432)
262 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.048 1E-06 54.1 10.3 117 209-328 3-139 (159)
263 PRK09361 radB DNA repair and r 96.0 0.017 3.7E-07 61.9 7.9 48 196-243 11-58 (225)
264 PRK06696 uridine kinase; Valid 96.0 0.012 2.6E-07 63.0 6.5 46 190-235 3-49 (223)
265 cd00544 CobU Adenosylcobinamid 96.0 0.015 3.2E-07 58.8 6.7 79 211-298 2-82 (169)
266 TIGR00959 ffh signal recogniti 96.0 0.075 1.6E-06 61.9 13.2 27 207-233 98-124 (428)
267 PRK04296 thymidine kinase; Pro 96.0 0.0095 2.1E-07 61.8 5.4 110 209-328 3-117 (190)
268 COG1618 Predicted nucleotide k 96.0 0.0074 1.6E-07 58.4 4.1 39 208-246 5-45 (179)
269 PRK08939 primosomal protein Dn 96.0 0.019 4.2E-07 64.0 8.1 36 208-243 156-191 (306)
270 PRK07667 uridine kinase; Provi 95.9 0.014 3E-07 60.9 6.2 41 195-235 4-44 (193)
271 TIGR00064 ftsY signal recognit 95.9 0.048 1E-06 59.9 10.6 37 206-242 70-106 (272)
272 PF00158 Sigma54_activat: Sigm 95.9 0.018 4E-07 58.2 6.8 46 187-232 1-46 (168)
273 TIGR02237 recomb_radB DNA repa 95.9 0.016 3.4E-07 61.4 6.6 44 200-243 4-47 (209)
274 cd01394 radB RadB. The archaea 95.8 0.021 4.6E-07 60.8 7.5 49 195-243 6-54 (218)
275 PRK12723 flagellar biosynthesi 95.8 0.13 2.8E-06 59.1 14.1 27 207-233 173-199 (388)
276 TIGR01425 SRP54_euk signal rec 95.8 0.4 8.7E-06 55.6 18.0 36 207-242 99-134 (429)
277 cd01393 recA_like RecA is a b 95.8 0.035 7.6E-07 59.6 9.0 48 196-243 7-60 (226)
278 TIGR01420 pilT_fam pilus retra 95.7 0.038 8.3E-07 63.1 9.5 109 208-328 122-231 (343)
279 PRK12726 flagellar biosynthesi 95.7 0.52 1.1E-05 53.4 17.9 38 206-243 204-241 (407)
280 PF00448 SRP54: SRP54-type pro 95.7 0.028 6.1E-07 58.5 7.6 36 208-243 1-36 (196)
281 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.05 1.1E-06 56.1 9.5 23 210-232 1-23 (183)
282 KOG2228 Origin recognition com 95.7 0.13 2.7E-06 56.0 12.3 145 183-328 22-183 (408)
283 KOG0733 Nuclear AAA ATPase (VC 95.7 0.031 6.8E-07 65.0 8.3 129 207-360 544-693 (802)
284 COG0466 Lon ATP-dependent Lon 95.7 0.056 1.2E-06 64.5 10.6 159 184-359 322-508 (782)
285 COG0464 SpoVK ATPases of the A 95.7 0.069 1.5E-06 64.7 12.0 155 185-363 242-427 (494)
286 PHA00729 NTP-binding motif con 95.7 0.021 4.5E-07 59.9 6.3 27 207-233 16-42 (226)
287 COG4608 AppF ABC-type oligopep 95.6 0.034 7.3E-07 59.3 7.7 124 207-333 38-176 (268)
288 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.041 9E-07 59.4 8.8 47 197-243 8-60 (235)
289 COG0465 HflB ATP-dependent Zn 95.6 0.074 1.6E-06 63.5 11.4 173 182-384 147-355 (596)
290 cd01121 Sms Sms (bacterial rad 95.6 0.032 7E-07 63.9 8.1 49 195-243 69-117 (372)
291 PRK10416 signal recognition pa 95.6 0.065 1.4E-06 60.2 10.3 29 207-235 113-141 (318)
292 TIGR01650 PD_CobS cobaltochela 95.6 0.23 5E-06 55.3 14.3 53 181-237 41-93 (327)
293 COG0488 Uup ATPase components 95.5 0.24 5.2E-06 59.4 15.3 129 208-345 348-511 (530)
294 PF03215 Rad17: Rad17 cell cyc 95.5 0.14 3.1E-06 61.2 13.3 58 183-242 17-77 (519)
295 KOG1947 Leucine rich repeat pr 95.5 0.0027 5.8E-08 76.9 -1.3 84 826-918 354-444 (482)
296 PRK15455 PrkA family serine pr 95.5 0.016 3.5E-07 68.1 5.0 51 184-234 75-129 (644)
297 PRK05541 adenylylsulfate kinas 95.4 0.017 3.7E-07 59.2 4.7 37 207-243 6-42 (176)
298 KOG0734 AAA+-type ATPase conta 95.4 0.1 2.2E-06 59.9 10.8 150 184-360 303-485 (752)
299 KOG0652 26S proteasome regulat 95.4 0.22 4.8E-06 51.8 12.3 167 185-376 171-373 (424)
300 PRK05022 anaerobic nitric oxid 95.4 0.17 3.6E-06 61.4 13.7 51 183-233 185-235 (509)
301 PF01583 APS_kinase: Adenylyls 95.4 0.024 5.1E-07 56.0 5.2 36 208-243 2-37 (156)
302 PRK14722 flhF flagellar biosyn 95.4 0.14 3E-06 58.4 12.0 37 207-243 136-174 (374)
303 KOG2739 Leucine-rich acidic nu 95.3 0.0089 1.9E-07 62.7 2.1 35 832-866 114-152 (260)
304 PF13238 AAA_18: AAA domain; P 95.3 0.013 2.9E-07 56.3 3.3 22 211-232 1-22 (129)
305 PF07726 AAA_3: ATPase family 95.3 0.011 2.3E-07 55.8 2.4 31 211-241 2-32 (131)
306 PRK06067 flagellar accessory p 95.3 0.066 1.4E-06 57.8 9.0 48 196-243 13-60 (234)
307 cd01129 PulE-GspE PulE/GspE Th 95.3 0.055 1.2E-06 59.3 8.3 102 193-309 68-169 (264)
308 PRK12727 flagellar biosynthesi 95.3 0.21 4.5E-06 58.9 13.2 47 189-235 327-377 (559)
309 KOG0728 26S proteasome regulat 95.2 0.17 3.6E-06 52.4 10.8 151 186-361 147-333 (404)
310 PRK05800 cobU adenosylcobinami 95.2 0.19 4.2E-06 50.9 11.5 23 210-232 3-25 (170)
311 PF00485 PRK: Phosphoribulokin 95.2 0.017 3.6E-07 60.4 3.8 26 210-235 1-26 (194)
312 PF13604 AAA_30: AAA domain; P 95.1 0.076 1.6E-06 55.4 8.4 116 194-326 7-130 (196)
313 KOG0780 Signal recognition par 95.1 0.23 4.9E-06 55.0 12.0 38 205-242 98-135 (483)
314 KOG0727 26S proteasome regulat 95.1 0.13 2.8E-06 53.2 9.6 52 186-237 156-218 (408)
315 PF13671 AAA_33: AAA domain; P 95.1 0.077 1.7E-06 52.2 8.1 24 210-233 1-24 (143)
316 KOG2035 Replication factor C, 95.1 1.2 2.7E-05 47.3 16.7 228 183-429 11-282 (351)
317 KOG2123 Uncharacterized conser 95.1 0.00084 1.8E-08 70.1 -6.2 80 775-868 18-99 (388)
318 PRK15429 formate hydrogenlyase 95.1 0.09 2E-06 66.3 10.4 50 184-233 375-424 (686)
319 COG1066 Sms Predicted ATP-depe 95.0 0.075 1.6E-06 59.5 8.3 96 194-298 79-177 (456)
320 COG0563 Adk Adenylate kinase a 95.0 0.046 1E-06 55.8 6.3 23 210-232 2-24 (178)
321 PRK13531 regulatory ATPase Rav 95.0 0.044 9.4E-07 63.9 6.7 46 185-234 20-65 (498)
322 TIGR02858 spore_III_AA stage I 95.0 0.23 5E-06 54.3 11.9 116 206-331 109-233 (270)
323 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.12 2.6E-06 50.9 8.9 105 207-332 25-132 (144)
324 KOG2004 Mitochondrial ATP-depe 94.9 0.029 6.4E-07 66.4 5.1 53 185-237 411-467 (906)
325 PF08433 KTI12: Chromatin asso 94.9 0.059 1.3E-06 58.9 7.2 27 209-235 2-28 (270)
326 PRK10820 DNA-binding transcrip 94.9 0.32 7E-06 59.0 14.1 50 182-231 201-250 (520)
327 COG3910 Predicted ATPase [Gene 94.9 0.24 5.2E-06 49.5 10.3 131 207-346 36-204 (233)
328 PRK10923 glnG nitrogen regulat 94.9 0.28 6E-06 59.1 13.6 48 185-232 138-185 (469)
329 COG0572 Udk Uridine kinase [Nu 94.9 0.031 6.8E-07 57.9 4.5 31 206-236 6-36 (218)
330 cd00983 recA RecA is a bacter 94.9 0.05 1.1E-06 60.7 6.5 48 196-243 42-90 (325)
331 cd02019 NK Nucleoside/nucleoti 94.8 0.023 5E-07 48.0 3.0 23 210-232 1-23 (69)
332 PRK08356 hypothetical protein; 94.8 0.14 3E-06 53.5 9.5 21 209-229 6-26 (195)
333 PRK05703 flhF flagellar biosyn 94.8 0.43 9.4E-06 56.0 14.4 36 208-243 221-258 (424)
334 COG0541 Ffh Signal recognition 94.8 1.6 3.5E-05 49.8 17.9 28 207-234 99-126 (451)
335 cd01858 NGP_1 NGP-1. Autoanti 94.8 0.19 4.2E-06 50.3 10.1 122 56-230 2-124 (157)
336 TIGR02012 tigrfam_recA protein 94.8 0.057 1.2E-06 60.2 6.7 48 196-243 42-90 (321)
337 KOG1051 Chaperone HSP104 and r 94.8 0.28 6E-06 61.4 13.1 105 185-302 562-673 (898)
338 PTZ00301 uridine kinase; Provi 94.8 0.026 5.6E-07 59.3 3.8 29 208-236 3-31 (210)
339 TIGR03574 selen_PSTK L-seryl-t 94.8 0.034 7.3E-07 60.7 4.8 26 210-235 1-26 (249)
340 KOG0651 26S proteasome regulat 94.7 0.066 1.4E-06 57.4 6.6 31 207-237 165-195 (388)
341 PF13306 LRR_5: Leucine rich r 94.7 0.1 2.2E-06 50.1 7.7 106 545-670 3-112 (129)
342 COG1875 NYN ribonuclease and A 94.7 0.26 5.5E-06 54.4 11.1 25 205-229 242-266 (436)
343 PRK11388 DNA-binding transcrip 94.7 0.38 8.3E-06 60.2 14.7 49 184-232 324-372 (638)
344 PRK08233 hypothetical protein; 94.7 0.024 5.3E-07 58.4 3.4 26 208-233 3-28 (182)
345 KOG0729 26S proteasome regulat 94.7 0.052 1.1E-06 56.5 5.6 36 205-245 208-243 (435)
346 PRK06762 hypothetical protein; 94.7 0.027 5.8E-07 57.2 3.6 25 208-232 2-26 (166)
347 PTZ00088 adenylate kinase 1; P 94.7 0.052 1.1E-06 57.9 5.9 23 210-232 8-30 (229)
348 cd03222 ABC_RNaseL_inhibitor T 94.7 0.13 2.8E-06 52.5 8.5 105 208-332 25-137 (177)
349 PRK05480 uridine/cytidine kina 94.6 0.03 6.5E-07 59.3 4.0 27 206-232 4-30 (209)
350 KOG1970 Checkpoint RAD17-RFC c 94.6 0.12 2.7E-06 59.7 8.9 42 191-232 88-134 (634)
351 KOG1969 DNA replication checkp 94.6 0.085 1.8E-06 62.9 7.6 75 205-301 323-399 (877)
352 PRK03839 putative kinase; Prov 94.6 0.028 6.1E-07 57.9 3.4 24 210-233 2-25 (180)
353 PRK05439 pantothenate kinase; 94.5 0.089 1.9E-06 58.4 7.4 30 205-234 83-112 (311)
354 PF00406 ADK: Adenylate kinase 94.5 0.042 9.1E-07 54.7 4.5 20 213-232 1-20 (151)
355 PRK11823 DNA repair protein Ra 94.5 0.1 2.3E-06 61.6 8.5 49 195-243 67-115 (446)
356 cd03247 ABCC_cytochrome_bd The 94.5 0.21 4.6E-06 51.2 9.8 35 207-242 27-61 (178)
357 TIGR00235 udk uridine kinase. 94.5 0.038 8.3E-07 58.3 4.3 28 206-233 4-31 (207)
358 PF00437 T2SE: Type II/IV secr 94.5 0.029 6.3E-07 62.1 3.5 125 185-326 104-231 (270)
359 PRK06217 hypothetical protein; 94.5 0.14 3E-06 52.9 8.3 24 210-233 3-26 (183)
360 PTZ00494 tuzin-like protein; P 94.4 12 0.00026 43.0 23.5 211 135-359 302-544 (664)
361 PRK09270 nucleoside triphospha 94.4 0.055 1.2E-06 58.1 5.4 32 205-236 30-61 (229)
362 PRK00625 shikimate kinase; Pro 94.4 0.031 6.8E-07 56.8 3.3 24 210-233 2-25 (173)
363 COG2842 Uncharacterized ATPase 94.4 1.3 2.8E-05 48.0 15.4 180 159-363 46-227 (297)
364 TIGR00416 sms DNA repair prote 94.4 0.11 2.4E-06 61.4 8.4 50 194-243 80-129 (454)
365 PRK04040 adenylate kinase; Pro 94.4 0.04 8.6E-07 57.0 4.0 25 209-233 3-27 (188)
366 cd03214 ABC_Iron-Siderophores_ 94.4 0.12 2.5E-06 53.3 7.5 120 207-331 24-162 (180)
367 cd01122 GP4d_helicase GP4d_hel 94.4 0.23 5.1E-06 54.8 10.4 54 207-267 29-83 (271)
368 COG1224 TIP49 DNA helicase TIP 94.3 0.12 2.6E-06 56.5 7.4 59 181-239 35-96 (450)
369 cd03223 ABCD_peroxisomal_ALDP 94.3 0.14 3E-06 51.9 7.7 118 207-330 26-151 (166)
370 COG4088 Predicted nucleotide k 94.3 0.036 7.8E-07 55.8 3.2 32 209-240 2-33 (261)
371 KOG2123 Uncharacterized conser 94.3 0.0045 9.8E-08 64.8 -3.2 77 591-667 41-123 (388)
372 PRK00279 adk adenylate kinase; 94.2 0.13 2.8E-06 54.7 7.7 23 210-232 2-24 (215)
373 PF00910 RNA_helicase: RNA hel 94.2 0.029 6.2E-07 52.2 2.4 26 211-236 1-26 (107)
374 cd03115 SRP The signal recogni 94.2 0.43 9.3E-06 48.7 11.3 33 210-242 2-34 (173)
375 COG0055 AtpD F0F1-type ATP syn 94.2 0.085 1.8E-06 58.0 6.1 101 208-312 147-268 (468)
376 cd03238 ABC_UvrA The excision 94.2 0.15 3.3E-06 52.0 7.7 24 207-230 20-43 (176)
377 PRK14528 adenylate kinase; Pro 94.2 0.12 2.6E-06 53.5 7.1 24 209-232 2-25 (186)
378 TIGR03600 phage_DnaB phage rep 94.2 1 2.2E-05 53.3 15.9 73 187-267 174-247 (421)
379 KOG0743 AAA+-type ATPase [Post 94.2 0.39 8.5E-06 54.7 11.4 149 209-394 236-413 (457)
380 TIGR00390 hslU ATP-dependent p 94.1 0.078 1.7E-06 60.5 5.9 52 185-236 12-75 (441)
381 TIGR03877 thermo_KaiC_1 KaiC d 94.1 0.3 6.4E-06 52.8 10.3 48 196-243 9-56 (237)
382 cd03216 ABC_Carb_Monos_I This 94.1 0.083 1.8E-06 53.4 5.6 115 208-332 26-147 (163)
383 PRK05201 hslU ATP-dependent pr 94.1 0.088 1.9E-06 60.1 6.2 52 185-236 15-78 (443)
384 PRK00131 aroK shikimate kinase 94.0 0.042 9.1E-07 56.1 3.4 26 208-233 4-29 (175)
385 TIGR00708 cobA cob(I)alamin ad 94.0 0.31 6.7E-06 49.1 9.3 117 208-328 5-141 (173)
386 PRK10463 hydrogenase nickel in 94.0 0.05 1.1E-06 59.4 4.0 36 206-241 102-137 (290)
387 TIGR01360 aden_kin_iso1 adenyl 94.0 0.043 9.4E-07 56.9 3.5 26 207-232 2-27 (188)
388 PRK09354 recA recombinase A; P 94.0 0.12 2.7E-06 58.1 7.2 48 196-243 47-95 (349)
389 COG1121 ZnuC ABC-type Mn/Zn tr 94.0 0.13 2.8E-06 54.9 7.0 52 279-332 147-204 (254)
390 COG0468 RecA RecA/RadA recombi 94.0 0.16 3.4E-06 55.4 7.7 56 199-259 51-106 (279)
391 cd03228 ABCC_MRP_Like The MRP 94.0 0.17 3.6E-06 51.6 7.6 117 207-331 27-159 (171)
392 PRK00889 adenylylsulfate kinas 93.9 0.074 1.6E-06 54.5 4.9 36 207-242 3-38 (175)
393 TIGR02238 recomb_DMC1 meiotic 93.9 0.15 3.3E-06 57.1 7.7 61 195-260 83-149 (313)
394 TIGR00150 HI0065_YjeE ATPase, 93.9 0.079 1.7E-06 50.9 4.6 27 207-233 21-47 (133)
395 PRK06547 hypothetical protein; 93.8 0.059 1.3E-06 54.8 4.0 27 206-232 13-39 (172)
396 TIGR01351 adk adenylate kinase 93.8 0.11 2.5E-06 54.8 6.3 22 211-232 2-23 (210)
397 PRK13947 shikimate kinase; Pro 93.8 0.047 1E-06 55.7 3.2 26 210-235 3-28 (171)
398 PRK03846 adenylylsulfate kinas 93.8 0.082 1.8E-06 55.4 5.1 38 206-243 22-59 (198)
399 PF06068 TIP49: TIP49 C-termin 93.8 0.12 2.6E-06 57.6 6.4 60 182-241 21-83 (398)
400 PRK05986 cob(I)alamin adenolsy 93.8 0.44 9.6E-06 48.7 10.0 119 207-328 21-159 (191)
401 cd02027 APSK Adenosine 5'-phos 93.8 0.49 1.1E-05 46.9 10.3 24 210-233 1-24 (149)
402 PRK06995 flhF flagellar biosyn 93.7 0.68 1.5E-05 54.7 12.9 28 207-234 255-282 (484)
403 TIGR03499 FlhF flagellar biosy 93.7 0.19 4.2E-06 55.6 8.1 29 207-235 193-221 (282)
404 PRK14529 adenylate kinase; Pro 93.7 0.19 4.2E-06 53.1 7.6 91 211-308 3-96 (223)
405 PRK07132 DNA polymerase III su 93.7 5.8 0.00012 44.2 19.5 155 208-390 18-185 (299)
406 cd02028 UMPK_like Uridine mono 93.7 0.072 1.6E-06 54.7 4.3 26 210-235 1-26 (179)
407 TIGR02525 plasmid_TraJ plasmid 93.7 0.11 2.3E-06 59.5 6.1 93 209-308 150-244 (372)
408 cd01130 VirB11-like_ATPase Typ 93.7 0.096 2.1E-06 54.2 5.3 92 208-308 25-119 (186)
409 TIGR02788 VirB11 P-type DNA tr 93.7 0.12 2.6E-06 58.1 6.4 110 207-328 143-254 (308)
410 PRK15115 response regulator Gl 93.6 3.9 8.4E-05 48.9 19.7 48 185-232 134-181 (444)
411 PF08423 Rad51: Rad51; InterP 93.6 0.071 1.5E-06 58.1 4.4 63 196-264 26-94 (256)
412 COG2884 FtsE Predicted ATPase 93.6 0.24 5.2E-06 49.7 7.5 54 279-334 145-204 (223)
413 COG1428 Deoxynucleoside kinase 93.6 0.056 1.2E-06 55.3 3.2 26 208-233 4-29 (216)
414 cd00227 CPT Chloramphenicol (C 93.6 0.06 1.3E-06 55.2 3.5 26 209-234 3-28 (175)
415 cd03246 ABCC_Protease_Secretio 93.5 0.18 4E-06 51.4 7.0 34 208-242 28-61 (173)
416 PF03308 ArgK: ArgK protein; 93.5 0.15 3.2E-06 54.3 6.2 42 194-235 15-56 (266)
417 KOG0736 Peroxisome assembly fa 93.5 0.26 5.6E-06 59.3 8.9 100 179-300 665-775 (953)
418 PRK14526 adenylate kinase; Pro 93.5 0.16 3.5E-06 53.5 6.6 22 211-232 3-24 (211)
419 PRK09280 F0F1 ATP synthase sub 93.5 0.31 6.6E-06 57.0 9.3 94 207-303 143-252 (463)
420 TIGR00554 panK_bact pantothena 93.5 0.18 3.9E-06 55.6 7.1 28 206-233 60-87 (290)
421 PF10236 DAP3: Mitochondrial r 93.5 2.3 4.9E-05 47.8 16.1 48 340-387 258-306 (309)
422 cd01857 HSR1_MMR1 HSR1/MMR1. 93.4 0.62 1.3E-05 45.7 10.4 51 54-106 3-53 (141)
423 cd03281 ABC_MSH5_euk MutS5 hom 93.4 0.45 9.7E-06 50.3 9.9 23 208-230 29-51 (213)
424 cd03283 ABC_MutS-like MutS-lik 93.4 0.49 1.1E-05 49.5 10.0 23 209-231 26-48 (199)
425 PF13306 LRR_5: Leucine rich r 93.4 0.17 3.7E-06 48.6 6.2 13 748-760 8-20 (129)
426 TIGR02329 propionate_PrpR prop 93.3 1.1 2.5E-05 53.9 14.3 49 184-232 211-259 (526)
427 TIGR02524 dot_icm_DotB Dot/Icm 93.3 0.072 1.6E-06 60.9 4.0 96 208-309 134-232 (358)
428 cd03240 ABC_Rad50 The catalyti 93.3 0.4 8.7E-06 50.4 9.3 21 209-229 23-43 (204)
429 cd02024 NRK1 Nicotinamide ribo 93.3 0.055 1.2E-06 55.6 2.7 23 210-232 1-23 (187)
430 PF00560 LRR_1: Leucine Rich R 93.3 0.03 6.4E-07 35.3 0.4 18 836-853 2-19 (22)
431 cd01428 ADK Adenylate kinase ( 93.2 0.38 8.2E-06 50.1 9.0 22 211-232 2-23 (194)
432 KOG0730 AAA+-type ATPase [Post 93.2 0.42 9.1E-06 56.8 9.9 173 185-384 184-386 (693)
433 cd02025 PanK Pantothenate kina 93.2 0.06 1.3E-06 57.2 2.9 25 210-234 1-25 (220)
434 PRK14531 adenylate kinase; Pro 93.2 0.28 6E-06 50.7 7.7 24 209-232 3-26 (183)
435 cd01125 repA Hexameric Replica 93.2 0.77 1.7E-05 49.6 11.5 24 210-233 3-26 (239)
436 PRK12597 F0F1 ATP synthase sub 93.1 0.34 7.3E-06 56.8 9.1 93 207-303 142-251 (461)
437 TIGR01818 ntrC nitrogen regula 93.1 1.2 2.6E-05 53.5 14.4 49 185-233 134-182 (463)
438 cd01135 V_A-ATPase_B V/A-type 93.1 0.24 5.2E-06 53.7 7.3 93 207-303 68-180 (276)
439 KOG3928 Mitochondrial ribosome 93.1 1.3 2.8E-05 49.9 12.9 54 338-394 403-460 (461)
440 CHL00206 ycf2 Ycf2; Provisiona 93.1 0.56 1.2E-05 62.6 11.6 27 206-232 1628-1654(2281)
441 TIGR01039 atpD ATP synthase, F 93.1 0.44 9.5E-06 55.5 9.8 94 207-303 142-251 (461)
442 cd00267 ABC_ATPase ABC (ATP-bi 93.1 0.15 3.3E-06 51.1 5.5 115 208-333 25-146 (157)
443 COG2401 ABC-type ATPase fused 93.0 0.25 5.4E-06 55.2 7.3 151 187-337 373-578 (593)
444 PRK13949 shikimate kinase; Pro 93.0 0.075 1.6E-06 53.9 3.2 24 210-233 3-26 (169)
445 PF03205 MobB: Molybdopterin g 93.0 0.13 2.9E-06 50.3 4.7 35 209-243 1-36 (140)
446 PF12775 AAA_7: P-loop contain 93.0 0.051 1.1E-06 59.7 1.9 25 209-233 34-58 (272)
447 PHA02774 E1; Provisional 93.0 0.32 7E-06 57.7 8.5 41 192-233 419-459 (613)
448 TIGR03878 thermo_KaiC_2 KaiC d 92.9 0.13 2.8E-06 56.3 5.0 38 206-243 34-71 (259)
449 cd03230 ABC_DR_subfamily_A Thi 92.9 0.26 5.6E-06 50.3 7.0 35 207-242 25-59 (173)
450 COG0467 RAD55 RecA-superfamily 92.9 0.23 5E-06 54.5 7.0 44 200-243 15-58 (260)
451 cd02023 UMPK Uridine monophosp 92.9 0.068 1.5E-06 56.0 2.7 23 210-232 1-23 (198)
452 PRK07276 DNA polymerase III su 92.9 6.2 0.00013 43.6 17.9 68 288-357 103-173 (290)
453 PRK04328 hypothetical protein; 92.9 0.71 1.5E-05 50.2 10.7 48 196-243 11-58 (249)
454 cd00071 GMPK Guanosine monopho 92.9 0.07 1.5E-06 52.1 2.6 27 210-236 1-27 (137)
455 TIGR02655 circ_KaiC circadian 92.8 0.15 3.3E-06 61.1 6.0 50 194-243 249-298 (484)
456 PRK10751 molybdopterin-guanine 92.8 0.12 2.6E-06 52.1 4.3 29 207-235 5-33 (173)
457 TIGR00764 lon_rel lon-related 92.8 0.18 3.9E-06 61.9 6.6 58 183-244 16-74 (608)
458 PF10137 TIR-like: Predicted n 92.8 0.25 5.4E-06 46.9 6.0 59 12-73 2-61 (125)
459 PF03266 NTPase_1: NTPase; In 92.7 0.088 1.9E-06 53.2 3.2 24 211-234 2-25 (168)
460 cd02021 GntK Gluconate kinase 92.7 0.076 1.7E-06 52.8 2.7 23 210-232 1-23 (150)
461 COG1120 FepC ABC-type cobalami 92.7 0.36 7.7E-06 51.9 7.8 57 277-334 144-206 (258)
462 cd00464 SK Shikimate kinase (S 92.7 0.09 2E-06 52.4 3.3 22 211-232 2-23 (154)
463 PLN02674 adenylate kinase 92.7 0.41 9E-06 51.3 8.3 24 209-232 32-55 (244)
464 TIGR02322 phosphon_PhnN phosph 92.7 0.09 1.9E-06 54.1 3.3 25 209-233 2-26 (179)
465 cd02020 CMPK Cytidine monophos 92.7 0.084 1.8E-06 52.1 3.0 23 210-232 1-23 (147)
466 PRK05537 bifunctional sulfate 92.7 0.21 4.6E-06 60.7 7.0 52 183-234 367-418 (568)
467 COG3854 SpoIIIAA ncharacterize 92.7 0.38 8.1E-06 49.6 7.4 110 209-326 138-252 (308)
468 PRK13946 shikimate kinase; Pro 92.7 0.087 1.9E-06 54.4 3.1 26 208-233 10-35 (184)
469 PRK05342 clpX ATP-dependent pr 92.7 0.18 4E-06 58.6 6.0 51 186-236 72-136 (412)
470 PRK13948 shikimate kinase; Pro 92.7 0.094 2E-06 53.7 3.3 28 207-234 9-36 (182)
471 PF00006 ATP-synt_ab: ATP synt 92.6 0.095 2.1E-06 55.1 3.4 86 209-302 16-118 (215)
472 TIGR02782 TrbB_P P-type conjug 92.6 0.2 4.3E-06 55.9 6.1 87 209-307 133-222 (299)
473 KOG1532 GTPase XAB1, interacts 92.6 0.14 2.9E-06 54.0 4.2 33 206-238 17-49 (366)
474 PRK14723 flhF flagellar biosyn 92.5 1.1 2.4E-05 55.7 12.7 26 208-233 185-210 (767)
475 PF01078 Mg_chelatase: Magnesi 92.5 0.17 3.7E-06 52.2 5.0 43 184-230 2-44 (206)
476 PRK15453 phosphoribulokinase; 92.5 0.17 3.6E-06 54.9 5.1 38 206-243 3-40 (290)
477 PRK13765 ATP-dependent proteas 92.5 0.2 4.2E-06 61.5 6.3 77 180-266 26-103 (637)
478 COG0003 ArsA Predicted ATPase 92.5 0.19 4E-06 56.2 5.6 36 208-243 2-37 (322)
479 PF03969 AFG1_ATPase: AFG1-lik 92.5 0.3 6.6E-06 55.8 7.4 104 206-328 60-168 (362)
480 PRK06731 flhF flagellar biosyn 92.5 0.89 1.9E-05 49.7 10.7 36 207-242 74-109 (270)
481 COG1703 ArgK Putative periplas 92.5 0.21 4.6E-06 53.8 5.6 42 196-237 39-80 (323)
482 COG0703 AroK Shikimate kinase 92.4 0.11 2.3E-06 52.0 3.2 28 209-236 3-30 (172)
483 COG0714 MoxR-like ATPases [Gen 92.4 0.15 3.3E-06 58.1 4.9 53 185-241 24-76 (329)
484 COG1136 SalX ABC-type antimicr 92.4 0.34 7.4E-06 50.9 7.0 54 279-333 150-209 (226)
485 PRK09519 recA DNA recombinatio 92.4 0.47 1E-05 59.0 9.3 50 194-243 45-95 (790)
486 PRK05917 DNA polymerase III su 92.4 2.6 5.6E-05 46.4 14.1 133 194-346 6-154 (290)
487 PRK13975 thymidylate kinase; P 92.4 0.12 2.6E-06 54.1 3.7 26 209-234 3-28 (196)
488 COG1102 Cmk Cytidylate kinase 92.3 0.11 2.4E-06 50.6 3.1 24 210-233 2-25 (179)
489 TIGR01069 mutS2 MutS2 family p 92.3 0.55 1.2E-05 59.4 10.0 113 288-410 401-521 (771)
490 COG1419 FlhF Flagellar GTP-bin 92.2 0.53 1.1E-05 53.4 8.7 35 208-242 203-239 (407)
491 PRK12339 2-phosphoglycerate ki 92.2 0.13 2.8E-06 53.6 3.6 25 208-232 3-27 (197)
492 PF13504 LRR_7: Leucine rich r 92.2 0.084 1.8E-06 30.9 1.3 15 858-872 2-16 (17)
493 COG5635 Predicted NTPase (NACH 92.2 0.81 1.8E-05 58.9 11.6 226 209-443 223-482 (824)
494 PRK14530 adenylate kinase; Pro 92.2 0.11 2.4E-06 55.2 3.3 23 210-232 5-27 (215)
495 PRK09435 membrane ATPase/prote 92.2 0.3 6.5E-06 55.0 6.8 31 205-235 53-83 (332)
496 PRK06002 fliI flagellum-specif 92.1 0.21 4.5E-06 58.1 5.6 25 207-231 164-188 (450)
497 PRK05057 aroK shikimate kinase 92.1 0.11 2.4E-06 52.9 3.1 26 208-233 4-29 (172)
498 PF00625 Guanylate_kin: Guanyl 92.0 0.12 2.6E-06 53.3 3.3 35 208-242 2-36 (183)
499 PRK08972 fliI flagellum-specif 92.0 0.31 6.8E-06 56.4 6.7 90 208-303 162-266 (444)
500 COG0529 CysC Adenylylsulfate k 92.0 0.22 4.8E-06 49.3 4.7 37 206-242 21-57 (197)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5e-149 Score=1449.65 Aligned_cols=1035 Identities=35% Similarity=0.570 Sum_probs=896.4
Q ss_pred CCCCC---CCCcccEEEcccccccCCchHHHHHHHHhcCCCcEEEcCCCCCCCcchHHHHHHhhhcceeEEEeccccccc
Q 046314 1 MASSS---PSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDEDLNRGDEISPALMKAIEGSKISVIIFSKDYASS 77 (1137)
Q Consensus 1 m~~~~---~~~~~dvFis~~~~d~r~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s 77 (1137)
||||| +.|+||||+||||+|||++|++||+++|.++||++|+|+++++|+.|.+++.+||++||++|||||++||+|
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s 80 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS 80 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence 66654 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhcCCCeEEEEEeecCcccccccccchHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccCCCCcccCc
Q 046314 78 KWCLNELVKILKCKNLKGQTVIPIYYHVSPSDVRKQTGTFGEGFVKLEQQFKEKAETVRKWRDAMIKTSYLSGHESTKIR 157 (1137)
Q Consensus 78 ~~c~~el~~~~~~~~~~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~~~~~g~~~~~~~ 157 (1137)
+||++||++|++|+++.+++|+||||+|||+|||+|+|+||+||++++++ .+.+++++||+||++||+++||+...++
T Consensus 81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~~~~~ 158 (1153)
T PLN03210 81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQNWP 158 (1153)
T ss_pred hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceecCCCC
Confidence 99999999999999999999999999999999999999999999999875 3568999999999999999999998899
Q ss_pred hhhHHHHHHHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC
Q 046314 158 PEAKLVQVIVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE 237 (1137)
Q Consensus 158 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1137)
+|+++|++||++|++++ +. +++.+.+++|||+++++++.++|..+.+++++||||||||+||||||+++|+++..+|+
T Consensus 159 ~E~~~i~~Iv~~v~~~l-~~-~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKL-NL-TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred CHHHHHHHHHHHHHHhh-cc-ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 99999999999999999 66 67788899999999999999999888888999999999999999999999999999999
Q ss_pred ceEEEeec--cch--hc-----cCc-ChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHHHHHHH
Q 046314 238 GNCFIENV--REE--IE-----NGV-GLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYF 307 (1137)
Q Consensus 238 ~~~~~~~~--~~~--~s-----~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l 307 (1137)
+.+|+.+. ... .. ... ....++++++.++...... . ......++++++++|+||||||||+.++++.+
T Consensus 237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~-~-~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L 314 (1153)
T PLN03210 237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI-K-IYHLGAMEERLKHRKVLIFIDDLDDQDVLDAL 314 (1153)
T ss_pred eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc-c-cCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHH
Confidence 99998642 110 00 011 1235677777776654311 1 11135668999999999999999999999999
Q ss_pred hcccCCCCCCCEEEEEeCChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhH
Q 046314 308 VGWLHGFCPGSRIVVTTRDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 308 ~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal 387 (1137)
.+...|+++||+||||||+++++..++++. +|+|+.|+.+||++||+++||++..+++++++++++|+++|+|+|||+
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~--~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl 392 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDH--IYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGL 392 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCCe--EEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHH
Confidence 988889999999999999999998877776 999999999999999999999988888889999999999999999999
Q ss_pred HHHhhhhccCCHHHHHHHHHHHhccCCcccHHHHHHHhhccCCh-hhHhHhhhcccccCCcCHHHHHHHHhhcCCchhHH
Q 046314 388 EVLGSSLHQKSKLDWENVLDNLKQISGVSRIYNVLRISYEELSF-EEKSTFLDIACFFKGECKDRVLMLLHDRQYNVTHV 466 (1137)
Q Consensus 388 ~~lg~~L~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~~ 466 (1137)
+++|++|++++..+|+.+++++++.++ ..|.++|++||++|++ .+|.||++|||||.+.+.+.+..+++.+++.++.+
T Consensus 393 ~vlgs~L~~k~~~~W~~~l~~L~~~~~-~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~ 471 (1153)
T PLN03210 393 NVLGSYLRGRDKEDWMDMLPRLRNGLD-GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIG 471 (1153)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCcc-HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhC
Confidence 999999999999999999999998777 7899999999999976 59999999999999999999999999999999999
Q ss_pred HHHHHhccCceeeCCeEEehHHHHHHHHHhhhccCccCCCCccccccccchhhhhhcccccceeeceecccccccccccc
Q 046314 467 LSILIDKSLITEHNNRLHMHELLQEMGQEIVRQEDIKEPGKRSRLWHHKDVRHVLKHNEGTNAIEGIFLNLAKIKGINLD 546 (1137)
Q Consensus 467 l~~L~~~sLi~~~~~~~~mHdll~~~~~~i~~~e~~~~~~~~~~l~~~~di~~vl~~~~~~~~i~~i~ldl~~~~~~~l~ 546 (1137)
++.|++++||+...++++|||++|+||++++++++ .+|++|+|+|+++|+++++..++|+..+++|++|++...++.++
T Consensus 472 l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 472 LKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred hHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 99999999999998999999999999999999998 78999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCch
Q 046314 547 SRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIV 626 (1137)
Q Consensus 547 ~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~ 626 (1137)
.++|.+|++|++|+++.+.. ....+...++|+++..+|++||+|+|.+|+++.+|..+.+.+|++|+|++|++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~------~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKW------DQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccc------cccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc
Confidence 99999999999999976531 012234578999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCC
Q 046314 627 QIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLH 706 (1137)
Q Consensus 627 ~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~ 706 (1137)
.+|.+...+. +|+.|+|++|..+..+|+++.+++|++|+|++|..+..+|.+++++++|+.|++++|..++.+|..+.
T Consensus 625 ~L~~~~~~l~--~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~ 702 (1153)
T PLN03210 625 KLWDGVHSLT--GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN 702 (1153)
T ss_pred ccccccccCC--CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCC
Confidence 9999876655 99999999999899999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEeccccccccc-------ccccccCCCCCc
Q 046314 707 FVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKR-------VSTSICKLKSLI 779 (1137)
Q Consensus 707 l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~-------lp~~l~~l~~L~ 779 (1137)
+.+|+.|++++|..+..+|....+|+.|++++|.+..+|..+ .+++|++|++.++..... .+......++|+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence 999999999999999999999999999999999999999876 688999999987653211 112233457899
Q ss_pred EecccccccccccccccCCCCCcceecccCc-cccccCchhhccccccccccCCCCCCCEEeecCCC-CCCcccccCCCC
Q 046314 780 WLCLNECLNLEKSWSELGNLKSFQYIGAHGS-TISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCA-LTAIPEEIGCLP 857 (1137)
Q Consensus 780 ~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n-~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 857 (1137)
.|+|++|.....+|..++++++|+.|++++| .+..+|..+ ++++|+.|+|++|. +..+|.. .+
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------~L~sL~~L~Ls~c~~L~~~p~~---~~ 846 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------NLESLESLDLSGCSRLRTFPDI---ST 846 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------CccccCEEECCCCCcccccccc---cc
Confidence 9999999999999999999999999999986 577777632 57899999999984 4456653 46
Q ss_pred CCCEEEccCCCCCcCC-CCCCcccccceeccccccccccCCCCC---CCcceeeccccccccccccCCccccc-------
Q 046314 858 SLEWLELRGNNFESLP-SIPELPPSLKWLQASNCKRLQFLPEIP---SRPEELDASLLQKLSKYSYDDEVEDV------- 926 (1137)
Q Consensus 858 ~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c~~L~~lp~lp---~~L~~L~~~~c~~L~~~~~~~~~~~~------- 926 (1137)
+|+.|+|++|.++.+| ++..++ +|+.|++++|++++.+|..+ ++|+.|++.+|++|+.++........
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~-~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~ 925 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFS-NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNI 925 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCC-CCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccc
Confidence 8999999999999999 888888 99999999999999998754 46778899999999987653211100
Q ss_pred --cccccceEEeecCccccHHHhhhhhhhhHHHHHHhhhhhhhhhhhHHHhhcccccCccccccccchhhhhhhhhhhcc
Q 046314 927 --NVSSSIKFLFVDCIKMYEEESKKNLADSQLRIQHMAVTSLRLFYELQVIRNSLSFAPLSRSLRFVTSQIMIFILQERY 1004 (1137)
Q Consensus 927 --~~~~~l~~~~~~C~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1137)
..++.....|.||+++.+.+. ++. +..+
T Consensus 926 ~~~~p~~~~l~f~nC~~L~~~a~----------l~~----------------------------------------~~~~ 955 (1153)
T PLN03210 926 HSKLPSTVCINFINCFNLDQEAL----------LQQ----------------------------------------QSIF 955 (1153)
T ss_pred cccCCchhccccccccCCCchhh----------hcc----------------------------------------cccc
Confidence 011112234889998853221 000 0001
Q ss_pred ccCCeEEEcCCCCCCCCccccCCCceEE-EEcCCCCC-CCcceEEEEEEEecCCCCCCCCceEEEEEEEEecCCCCeeee
Q 046314 1005 KLRGTVLILPGSEIPEWFSNQNSGSEIT-LQLPQHCC-QNLIGFALCVVLVWCDPEWSGFNIDFRYSFEMTTLSGRKHVR 1082 (1137)
Q Consensus 1005 ~~~~~~~~~pg~~iP~wf~~~~~g~~i~-~~lp~~~~-~~~~g~~~c~v~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 1082 (1137)
..+++||.++|+||+||+.|+++| |++|+.|+ ..|.||++|+|+++.++......+.+.|.|+|++.+|.+..
T Consensus 956 ----~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~- 1030 (1153)
T PLN03210 956 ----KQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFD- 1030 (1153)
T ss_pred ----eEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccc-
Confidence 157899999999999999999998 99999998 68999999999998876555567899999999999886521
Q ss_pred eeeeccccccCCcccccEEEEEeecCCCCC-C----C--C------CCcceEEEEEEEec--c--ceeeeCC
Q 046314 1083 RRCFKTLWFVYPMTKIDHVVLGFNPCGNVG-F----P--D------DNHLTTVSFDFFSI--F--NKVSRCG 1137 (1137)
Q Consensus 1083 ~~~~~~~~~~~~~~~sdHv~l~y~~~~~~~-~----~--~------~~~~~~~sf~f~~~--~--~~v~~cg 1137 (1137)
...++|+|+.|..+.++. | + . +..+++++++|... . .+|++||
T Consensus 1031 ------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg 1090 (1153)
T PLN03210 1031 ------------SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCG 1090 (1153)
T ss_pred ------------cCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEeee
Confidence 246777777777755442 1 0 1 12356766666543 2 3899999
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-56 Score=548.26 Aligned_cols=645 Identities=25% Similarity=0.275 Sum_probs=437.0
Q ss_pred cchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHH---hhccCCceEEEeeccchhccCcChHHHHHHHHH
Q 046314 188 VGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQ---VSNEFEGNCFIENVREEIENGVGLVHLHKQVVS 264 (1137)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~ 264 (1137)
||.+..++++.+.|..++. ++|||+||||+||||||++++++ +..+|+.++|+. +|+.+....++++++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-----VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-----VSKEFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE-----EcccccHHhHHHHHHH
Confidence 9999999999999975543 99999999999999999999994 679999999999 8999999999999999
Q ss_pred HHhCccccCC---CCCccHHHHHhhcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhHHh-hCCCCccE
Q 046314 265 LLLGERIEMG---GPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRK-HGVNDEYV 340 (1137)
Q Consensus 265 ~l~~~~~~~~---~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~-~~~~~~~~ 340 (1137)
.+........ .......+.+.|+++|++|||||||+..+|+.+..+++....||+|++|||++.|+.. ++++. .
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~--~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY--P 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc--c
Confidence 8887543322 2355677788999999999999999999999999999888889999999999999988 77755 8
Q ss_pred EEEccCCHHHHHHHHHhhcccCC-CCChhHHHHHHHHHHHhCCCchhHHHHhhhhccC-CHHHHHHHHHHHhcc-----C
Q 046314 341 YEVERLNEDEGLELFYKYAFRQS-HCPEHLTALSKKAVRYAEGNPLALEVLGSSLHQK-SKLDWENVLDNLKQI-----S 413 (1137)
Q Consensus 341 ~~v~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~~~-~~~~w~~~l~~l~~~-----~ 413 (1137)
++++.|+.+|||.||++.+|... ...+.++++|++++++|+|+|||++++|+.|+.+ +..+|+.+.+.+... +
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 99999999999999999998763 3334589999999999999999999999999987 667999999987654 2
Q ss_pred C-cccHHHHHHHhhccCChhhHhHhhhcccccCCcCH--HHHHHHHhhcCC------------chhHHHHHHHhccCcee
Q 046314 414 G-VSRIYNVLRISYEELSFEEKSTFLDIACFFKGECK--DRVLMLLHDRQY------------NVTHVLSILIDKSLITE 478 (1137)
Q Consensus 414 ~-~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~l~~~~~~~~~------------~~~~~l~~L~~~sLi~~ 478 (1137)
+ .+.+..+++.|||.|+++.|.||+|||.||+++.+ +.+...|.++|+ .+..++.+|++++|+..
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 1 25789999999999999999999999999999866 689999999994 35688999999999988
Q ss_pred eC-----CeEEehHHHHHHHHHhhhccCccCCCCccccccc---cchhhhhhcccccceeeceecccccccccccccccc
Q 046314 479 HN-----NRLHMHELLQEMGQEIVRQEDIKEPGKRSRLWHH---KDVRHVLKHNEGTNAIEGIFLNLAKIKGINLDSRAF 550 (1137)
Q Consensus 479 ~~-----~~~~mHdll~~~~~~i~~~e~~~~~~~~~~l~~~---~di~~vl~~~~~~~~i~~i~ldl~~~~~~~l~~~~f 550 (1137)
.. ..+.|||++|+||.+++.+...+... ...-.. .++.++ .....++.+.+-......+.-.
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~~~~~----~~~~~~rr~s~~~~~~~~~~~~---- 541 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGVGLSEIPQV----KSWNSVRRMSLMNNKIEHIAGS---- 541 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCcCccccccc----cchhheeEEEEeccchhhccCC----
Confidence 74 67999999999999999855432221 100000 011111 1112222222222211111111
Q ss_pred CCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecC-CCCCCCCCC-cccccceeecccCCchhh
Q 046314 551 TNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKY-PLRTLPENF-KPKNLIELNLPFSKIVQI 628 (1137)
Q Consensus 551 ~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~-~l~~lp~~~-~l~~L~~L~L~~n~i~~l 628 (1137)
.+.++|++|-+..+.. ....++..++...+.|++||+++| .+..||..+ .+-+|++|+|+++.++.+
T Consensus 542 ~~~~~L~tLll~~n~~-----------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSD-----------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL 610 (889)
T ss_pred CCCCccceEEEeecch-----------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc
Confidence 1233688888865420 134555554443358999999976 578899988 699999999999999999
Q ss_pred hhhhhhccccceeEEecCCCCCCCccCCC-CCCCcccEeeccCCC--CccccCccccCCCcCceEeccCCcCcccCCCCC
Q 046314 629 WEEKRYVKAFKLKSINLSHSQYLIRIPDP-SETPSLERINLWNCT--NLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNL 705 (1137)
Q Consensus 629 ~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~-~~l~~L~~L~L~~~~--~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~ 705 (1137)
|.+...++ +|.+||+.++..+..+|.. ..+++|++|.+..-. .....-..+.+|.+|+.|....+.. ..+-...
T Consensus 611 P~~l~~Lk--~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~ 687 (889)
T KOG4658|consen 611 PSGLGNLK--KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLL 687 (889)
T ss_pred chHHHHHH--hhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhh
Confidence 99988888 9999999988877777775 458899998886532 1111112233444444444422211 0000000
Q ss_pred CCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccc
Q 046314 706 HFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNE 785 (1137)
Q Consensus 706 ~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 785 (1137)
.+..|. ...+.+.+.++.....+.++..+.+|+.|.+.+|............ .+.+.
T Consensus 688 ~~~~L~-----------------~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~---~~~~~--- 744 (889)
T KOG4658|consen 688 GMTRLR-----------------SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES---LIVLL--- 744 (889)
T ss_pred hhHHHH-----------------HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc---cchhh---
Confidence 001110 0112222223444445555666666666666666554322211111 01000
Q ss_pred cccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC-cccccCCCCCCCEEEc
Q 046314 786 CLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-IPEEIGCLPSLEWLEL 864 (1137)
Q Consensus 786 ~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L 864 (1137)
.+++|..+...++..-..+.+ ....++|+.|.+..|...+ +.+....+..+..+.+
T Consensus 745 ------------~f~~l~~~~~~~~~~~r~l~~-----------~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~ 801 (889)
T KOG4658|consen 745 ------------CFPNLSKVSILNCHMLRDLTW-----------LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELIL 801 (889)
T ss_pred ------------hHHHHHHHHhhccccccccch-----------hhccCcccEEEEecccccccCCCHHHHhhhcccEEe
Confidence 011111111111111111111 1135788888888886655 4444555556665555
Q ss_pred cCCCCCcCCCCCCcccccceeccccccccccCCCCCCCcceeeccccccccccccC
Q 046314 865 RGNNFESLPSIPELPPSLKWLQASNCKRLQFLPEIPSRPEELDASLLQKLSKYSYD 920 (1137)
Q Consensus 865 s~n~l~~lp~~~~l~~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~~L~~~~~~ 920 (1137)
..+.+..++. ..++.+.+.+...|-..+.|+.+.+..||++..+|..
T Consensus 802 ~f~~~~~l~~---------~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 802 PFNKLEGLRM---------LCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred ccccccccee---------eecCCCCceeEecccCccchhheehhcCcccccCccc
Confidence 5555444321 1222233333344433345888888889998888753
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=345.18 Aligned_cols=156 Identities=31% Similarity=0.544 Sum_probs=144.7
Q ss_pred CCCCCCCcccEEEcccccccCCchHHHHHHHHhcCCCcEEEcC-CCCCCCcchHHHHHHhhhcceeEEEeccccccchhh
Q 046314 2 ASSSPSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWC 80 (1137)
Q Consensus 2 ~~~~~~~~~dvFis~~~~d~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c 80 (1137)
+||++..+|||||||||+|||++|++||+++|+++||+||+|+ ++++|+.|.+.|.+||++|+++|||||++||+|.||
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 4677899999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEeecCccccccc-ccchHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccCCCCcc-cCch
Q 046314 81 LNELVKILKCKNLKGQTVIPIYYHVSPSDVRKQ-TGTFGEGFVKLEQQFKEKAETVRKWRDAMIKTSYLSGHEST-KIRP 158 (1137)
Q Consensus 81 ~~el~~~~~~~~~~~~~v~pvfy~v~p~~vr~~-~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~~~~~g~~~~-~~~~ 158 (1137)
++||++|++|. +.|+||||+|||+|||+| .|. ...+++++||+||++||+++||+.. ..++
T Consensus 99 LdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~ 161 (187)
T PLN03194 99 LHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGN 161 (187)
T ss_pred HHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCC
Confidence 99999999874 479999999999999997 543 1358899999999999999999754 3688
Q ss_pred hhHHHHHHHHHHHHhc
Q 046314 159 EAKLVQVIVNDILKKL 174 (1137)
Q Consensus 159 e~~~i~~i~~~v~~~l 174 (1137)
|+++|++||++|.++|
T Consensus 162 e~e~i~~iv~~v~k~l 177 (187)
T PLN03194 162 WSEVVTMASDAVIKNL 177 (187)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999988
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.9e-36 Score=334.38 Aligned_cols=267 Identities=33% Similarity=0.485 Sum_probs=210.7
Q ss_pred hhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHH--hhccCCceEEEeeccchhccCcChHHHHHHHHHHHh
Q 046314 190 LNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQ--VSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLL 267 (1137)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~ 267 (1137)
||.++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+.++|+. .+.......+..+++.++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-----~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-----LSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-----EES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-----ccccccccccccccccccc
Confidence 789999999999876688999999999999999999999987 899999999987 5556666888999998887
Q ss_pred CccccC----CCCCccHHHHHhhcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhHHhhCCCCccEEEE
Q 046314 268 GERIEM----GGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKHGVNDEYVYEV 343 (1137)
Q Consensus 268 ~~~~~~----~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~v 343 (1137)
...... +.......+.+.|.++++||||||||+...|+.+...++.+..|++||||||++.++...+.. ...|+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l 154 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIEL 154 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEEC
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 764322 223356778899999999999999999999988887777677899999999999887665532 238999
Q ss_pred ccCCHHHHHHHHHhhcccCC-CCChhHHHHHHHHHHHhCCCchhHHHHhhhhccC-CHHHHHHHHHHHhccC-----Ccc
Q 046314 344 ERLNEDEGLELFYKYAFRQS-HCPEHLTALSKKAVRYAEGNPLALEVLGSSLHQK-SKLDWENVLDNLKQIS-----GVS 416 (1137)
Q Consensus 344 ~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~~~-~~~~w~~~l~~l~~~~-----~~~ 416 (1137)
++|+.+||++||.+.++... ...+...+.+++|++.|+|+|||++++|++|+.+ +..+|+.+++++.... ...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999998655 3344557789999999999999999999999644 6788999998776543 126
Q ss_pred cHHHHHHHhhccCChhhHhHhhhcccccCCcC--HHHHHHHHhhcCCc
Q 046314 417 RIYNVLRISYEELSFEEKSTFLDIACFFKGEC--KDRVLMLLHDRQYN 462 (1137)
Q Consensus 417 ~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~ 462 (1137)
.+..++..||+.|+++.|+||+++|+||.+.. .+.++.+|.++|+.
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i 282 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFI 282 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHT
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCC
Confidence 79999999999999999999999999999865 68899999988764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3.1e-29 Score=328.36 Aligned_cols=395 Identities=19% Similarity=0.218 Sum_probs=211.3
Q ss_pred cCCCCccccccccchhhhhhcccccceeeceeccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceec
Q 046314 503 KEPGKRSRLWHHKDVRHVLKHNEGTNAIEGIFLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQF 582 (1137)
Q Consensus 503 ~~~~~~~~l~~~~di~~vl~~~~~~~~i~~i~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~l 582 (1137)
.+|.++...|+..+-+...........-+...+|++........+.+|..+++|++|++++|. ....+
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~------------~~~~i 109 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ------------LSGPI 109 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc------------cCCcC
Confidence 345555566754433322222222111123344554443222335678888888888887764 22345
Q ss_pred CCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCch-hhhhhhhhccccceeEEecCCCCCCCccCC-CCCC
Q 046314 583 PDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIV-QIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSET 660 (1137)
Q Consensus 583 p~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~-~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l 660 (1137)
|.++....++|++|++++|.+....+...+.+|++|+|++|.+. .++.....+. +|++|+|++|.+...+|. +..+
T Consensus 110 p~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 110 PDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS--SLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred ChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCC--CCCEEECccCcccccCChhhhhC
Confidence 55554233466666666666553222234556666666666554 2333333222 566666666655544444 4555
Q ss_pred CcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCC-CCCCceEeccCCccCCCCCccc---CCCcEEEe
Q 046314 661 PSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLH-FVSPVNIDCSFCVNLTEFPRIS---GNITKLNL 736 (1137)
Q Consensus 661 ~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~ls~c~~l~~~~~~~---~~L~~L~L 736 (1137)
++|++|+|++|.....+|..++++++|+.|+|++|.....+|..+. +.+|+.|++++|.....+|..+ .+|++|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 5666666655555555555555555555555555554444554442 4555555555554333333322 23444444
Q ss_pred cCCCcc-ccCcc------------------------ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccc
Q 046314 737 CDTAIE-EVPSS------------------------VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEK 791 (1137)
Q Consensus 737 ~~~~i~-~lp~~------------------------i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~ 791 (1137)
++|.+. .+|.+ +..+++|+.|++++|.+.+..|..+.++++|+.|++++|.....
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 444443 33444 44445555555555544444454455555555555555554444
Q ss_pred cccccCCCCCcceecccCcccc-ccCchhhcccccccc-------------ccCCCCCCCEEeecCCCCCC-cccccCCC
Q 046314 792 SWSELGNLKSFQYIGAHGSTIS-QLPHLLSHLVSLHAS-------------LLSGLSSLNWLNLNNCALTA-IPEEIGCL 856 (1137)
Q Consensus 792 ~~~~l~~l~~L~~L~l~~n~i~-~lp~~l~~l~~L~~~-------------~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l 856 (1137)
+|..++.+++|+.|++++|.+. .+|.++..+.++..+ .+..+++|+.|+|++|.++. +|..+..+
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 5555555555555555555554 344444433333222 13345677777777777664 66667777
Q ss_pred CCCCEEEccCCCCCcCC--CCCCcccccceeccccccccccCCCC--CCCcceeeccccc
Q 046314 857 PSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCKRLQFLPEI--PSRPEELDASLLQ 912 (1137)
Q Consensus 857 ~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c~ 912 (1137)
++|+.|+|++|+++..+ .+..++ +|+.|++++|+....+|.. .++|+.|++++|.
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMP-SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCC-CCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 77777777777776543 344555 7788888877766666653 2567778777764
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.3e-27 Score=312.94 Aligned_cols=365 Identities=22% Similarity=0.204 Sum_probs=287.6
Q ss_pred ccccccCCCCCCcEEEEecCCCCCc-cc--------cccCCC-CceecCCCCCCCCCCceEEEEecCCCC-CCCCCC-cc
Q 046314 545 LDSRAFTNMSSLRVLKFYIPEGLDM-SF--------EEQHSD-SKVQFPDGLDYLPEKLKYLHLHKYPLR-TLPENF-KP 612 (1137)
Q Consensus 545 l~~~~f~~l~~Lr~L~l~~~~~~~l-~~--------~~~~~~-~~~~lp~~l~~l~~~L~~L~l~~~~l~-~lp~~~-~l 612 (1137)
++...|.++++||+|++++|..... +. ....+| ....+|..+..++ +|++|++++|.+. .+|..+ ++
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCC-CCCEEECccCcccccCChhhhhC
Confidence 3344455677777777766543110 00 000111 2235666666664 8999999988876 667766 78
Q ss_pred cccceeecccCCchh-hhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceE
Q 046314 613 KNLIELNLPFSKIVQ-IWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLL 690 (1137)
Q Consensus 613 ~~L~~L~L~~n~i~~-l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L 690 (1137)
.+|++|+|++|.+.. ++.....+ .+|+.|+|++|.+...+|. ++.+++|++|++++|...+.+|..++++++|+.|
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQM--KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCc--CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 899999999888764 44444444 4899999999988877776 7889999999999998888889999999999999
Q ss_pred eccCCcCcccCCCCCC-CCCCceEeccCCccCCCCCcc---cCCCcEEEecCCCcc-ccCccccCCCCCcEEeccccccc
Q 046314 691 CFQGCKNLRSFPSNLH-FVSPVNIDCSFCVNLTEFPRI---SGNITKLNLCDTAIE-EVPSSVECLTNLEYLYINRCKRL 765 (1137)
Q Consensus 691 ~L~~c~~l~~lp~~~~-l~~L~~L~ls~c~~l~~~~~~---~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l 765 (1137)
++++|.....+|..+. +.+|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 9999887777887764 889999999998776677764 347899999999987 56778999999999999999999
Q ss_pred ccccccccCCCCCcEecccccccccccccccCCCCCcceecccCcccc-ccCchhhcccccccc-------------ccC
Q 046314 766 KRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTIS-QLPHLLSHLVSLHAS-------------LLS 831 (1137)
Q Consensus 766 ~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~-~lp~~l~~l~~L~~~-------------~l~ 831 (1137)
+.+|..++.+++|+.|++++|......|..+..+++|+.|++++|.+. .+|..+..+++|+.+ .+.
T Consensus 346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 999999999999999999999998889999999999999999999887 577777777666544 245
Q ss_pred CCCCCCEEeecCCCCCC-cccccCCCCCCCEEEccCCCCC-cCCCCCCcccccceeccccccccccCCCC---CCCccee
Q 046314 832 GLSSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRGNNFE-SLPSIPELPPSLKWLQASNCKRLQFLPEI---PSRPEEL 906 (1137)
Q Consensus 832 ~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~~l~~~L~~L~l~~c~~L~~lp~l---p~~L~~L 906 (1137)
.+++|+.|++++|.++. +|..+..+++|+.|+|++|++. .+|...... +|+.|++++|.....+|.. .++|+.|
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 504 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQL 504 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccc-cceEEECcCCccCCccChhhhhhhccCEE
Confidence 68899999999999997 7777889999999999999987 455444555 9999999999876666653 3578888
Q ss_pred ecccccc
Q 046314 907 DASLLQK 913 (1137)
Q Consensus 907 ~~~~c~~ 913 (1137)
++++|.-
T Consensus 505 ~Ls~N~l 511 (968)
T PLN00113 505 KLSENKL 511 (968)
T ss_pred ECcCCcc
Confidence 8887743
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1e-26 Score=256.26 Aligned_cols=347 Identities=20% Similarity=0.164 Sum_probs=252.2
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC--c
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF--K 611 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~--~ 611 (1137)
.+|+++++.-+++...|.+++||+.+++..| ....+|...... .+|+.|+|.+|.+.++...- .
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-------------~Lt~IP~f~~~s-ghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-------------ELTRIPRFGHES-GHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccc-------------hhhhcccccccc-cceeEEeeeccccccccHHHHHh
Confidence 4777777777778888889999999888655 345566544433 47888999998888776654 6
Q ss_pred ccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceE
Q 046314 612 PKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLL 690 (1137)
Q Consensus 612 l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L 690 (1137)
+..|+.|||+.|.|..++......+ .++++|+|++|++...-.+ |..+.+|-.|.|+.|......+.+|.+|++|+.|
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCC-CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 7788889999998888865543332 3889999998887665444 7888888889998887666666778889999999
Q ss_pred eccCCcCcccC--CCCCCCCCCceEeccCCccCCCCC----cccCCCcEEEecCCCccccCcc-ccCCCCCcEEeccccc
Q 046314 691 CFQGCKNLRSF--PSNLHFVSPVNIDCSFCVNLTEFP----RISGNITKLNLCDTAIEEVPSS-VECLTNLEYLYINRCK 763 (1137)
Q Consensus 691 ~L~~c~~l~~l--p~~~~l~~L~~L~ls~c~~l~~~~----~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 763 (1137)
+|..|.. +.. -..-++.+|+.|.+..+ .+..+. -...+|++|+|..|++.++... +.+|++|+.|+|++|.
T Consensus 227 dLnrN~i-rive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 227 DLNRNRI-RIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hccccce-eeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 8887642 222 11124677777777653 222222 2345778888888888777554 7778888888888888
Q ss_pred ccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecC
Q 046314 764 RLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNN 843 (1137)
Q Consensus 764 ~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~ 843 (1137)
+...-++++...++|++|+|+.|.+...-++.|..+..|+.|.|++|+|..+.. ..|.++++|+.|||++
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e----------~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE----------GAFVGLSSLHKLDLRS 374 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh----------hHHHHhhhhhhhcCcC
Confidence 777777777777888888888887777667777778888888888887766544 2467888999999999
Q ss_pred CCCCC----cccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceeccccccccccCCCCC--CCcceeec
Q 046314 844 CALTA----IPEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCKRLQFLPEIP--SRPEELDA 908 (1137)
Q Consensus 844 n~l~~----lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~~L~~lp~lp--~~L~~L~~ 908 (1137)
|.++. -...+..+++|+.|.|.||++..+| .+.+++ +|+.|+|.++.....-|+.+ -.|++|.+
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~-~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE-ALEHLDLGDNAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCc-ccceecCCCCcceeecccccccchhhhhhh
Confidence 98874 2334677899999999999999999 788888 99999998887655555433 24444443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=8.2e-27 Score=257.59 Aligned_cols=297 Identities=23% Similarity=0.309 Sum_probs=172.3
Q ss_pred eecCCCCCCCCCCceEEEEecCCCC--CCCCCC-cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC
Q 046314 580 VQFPDGLDYLPEKLKYLHLHKYPLR--TLPENF-KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD 656 (1137)
Q Consensus 580 ~~lp~~l~~l~~~L~~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~ 656 (1137)
..+-..+..+| .||.+.+..|+++ -+|..+ .+..|..|||++|+++..|.+....+ ++-.|+||+|++- .+|.
T Consensus 68 ~~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AK--n~iVLNLS~N~Ie-tIPn 143 (1255)
T KOG0444|consen 68 ISVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAK--NSIVLNLSYNNIE-TIPN 143 (1255)
T ss_pred Hhhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhc--CcEEEEcccCccc-cCCc
Confidence 33444444454 5566666666555 344443 56666666666666666666555555 6666666666543 3333
Q ss_pred --CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcC----cccCCCCCCCCCCceEeccCCc-cCCCCCccc-
Q 046314 657 --PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKN----LRSFPSNLHFVSPVNIDCSFCV-NLTEFPRIS- 728 (1137)
Q Consensus 657 --~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~----l~~lp~~~~l~~L~~L~ls~c~-~l~~~~~~~- 728 (1137)
+-+++.|-.|+|++| .+..+|+.+..|.+|++|.|++|+. ++.+|+ +.+|++|.+++-. .+..+|..+
T Consensus 144 ~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs---mtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS---MTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred hHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc---chhhhhhhcccccchhhcCCCchh
Confidence 455666666666655 3555566666666666666666542 233333 3445555554432 123344322
Q ss_pred --CCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceec
Q 046314 729 --GNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIG 806 (1137)
Q Consensus 729 --~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 806 (1137)
.||..++++.|.+..+|..+-++++|+.|+|++|++++ +.-..+.-.+|++|++|.|+ +..+|..+.+++.|+.|.
T Consensus 220 ~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHH
Confidence 24455555555555555555555555555555555332 22233334455555555553 334555555555555555
Q ss_pred ccCcccc--ccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC-CCCCcccccc
Q 046314 807 AHGSTIS--QLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP-SIPELPPSLK 883 (1137)
Q Consensus 807 l~~n~i~--~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~ 883 (1137)
+.+|++. .+|+.|+ .+.+|+.+..++|++.-+|+++..+..|+.|.|+.|.+.++| .|.-++ .|+
T Consensus 298 ~n~NkL~FeGiPSGIG-----------KL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~-~l~ 365 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIG-----------KLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLP-DLK 365 (1255)
T ss_pred hccCcccccCCccchh-----------hhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcC-Ccc
Confidence 5555443 4555433 356677788888888888888888888888888888888888 555555 888
Q ss_pred eeccccccccccCCC
Q 046314 884 WLQASNCKRLQFLPE 898 (1137)
Q Consensus 884 ~L~l~~c~~L~~lp~ 898 (1137)
.|++.++++|..-|.
T Consensus 366 vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 366 VLDLRENPNLVMPPK 380 (1255)
T ss_pred eeeccCCcCccCCCC
Confidence 888888888866554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=7.4e-25 Score=241.63 Aligned_cols=350 Identities=18% Similarity=0.169 Sum_probs=276.3
Q ss_pred ceeccccccccccccccccCCCC--CCcEEEEecCCCCCccccccCCCCceec-CCCCCCCCCCceEEEEecCCCCCCCC
Q 046314 532 GIFLNLAKIKGINLDSRAFTNMS--SLRVLKFYIPEGLDMSFEEQHSDSKVQF-PDGLDYLPEKLKYLHLHKYPLRTLPE 608 (1137)
Q Consensus 532 ~i~ldl~~~~~~~l~~~~f~~l~--~Lr~L~l~~~~~~~l~~~~~~~~~~~~l-p~~l~~l~~~L~~L~l~~~~l~~lp~ 608 (1137)
.-.+|+++.+.-.++...+.+.- .-+.|++++|. ..++ +.++..+| +|+.+++.+|.++.+|.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk-------------l~~id~~~f~nl~-nLq~v~l~~N~Lt~IP~ 119 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK-------------LSHIDFEFFYNLP-NLQEVNLNKNELTRIPR 119 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccc-------------cccCcHHHHhcCC-cceeeeeccchhhhccc
Confidence 34556665544444444555443 34559998774 2222 23445565 99999999999999999
Q ss_pred CCc-ccccceeecccCCchhhhh-hhhhccccceeEEecCCCCCCCcc-CCCCCCCcccEeeccCCCCccccCccccCCC
Q 046314 609 NFK-PKNLIELNLPFSKIVQIWE-EKRYVKAFKLKSINLSHSQYLIRI-PDPSETPSLERINLWNCTNLAWVPSSIQNFN 685 (1137)
Q Consensus 609 ~~~-l~~L~~L~L~~n~i~~l~~-~~~~~~l~~L~~L~Ls~n~~~~~~-p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~ 685 (1137)
... ..+|+.|+|.+|.|..+.. ..+.+. .|+.||||.|.+.... |.|..-.++++|+|++|.+...-...|.+|.
T Consensus 120 f~~~sghl~~L~L~~N~I~sv~se~L~~l~--alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln 197 (873)
T KOG4194|consen 120 FGHESGHLEKLDLRHNLISSVTSEELSALP--ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN 197 (873)
T ss_pred ccccccceeEEeeeccccccccHHHHHhHh--hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc
Confidence 884 4569999999999987743 334444 9999999999865432 3477789999999999988877778899999
Q ss_pred cCceEeccCCcCcccCCCC-CC-CCCCceEeccCCccCCCC----CcccCCCcEEEecCCCccccCcc-ccCCCCCcEEe
Q 046314 686 HLSLLCFQGCKNLRSFPSN-LH-FVSPVNIDCSFCVNLTEF----PRISGNITKLNLCDTAIEEVPSS-VECLTNLEYLY 758 (1137)
Q Consensus 686 ~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~ls~c~~l~~~----~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~ 758 (1137)
+|..|.|+.| .+..+|.. +. ++.|+.|+|..+. ++.. ...+.+|+.|.|..|.|..+.++ |..|.++++|+
T Consensus 198 sL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 198 SLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred hheeeecccC-cccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 9999999986 46667654 44 8999999998753 2211 23455889999999999999877 78899999999
Q ss_pred cccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCE
Q 046314 759 INRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNW 838 (1137)
Q Consensus 759 L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~ 838 (1137)
|..|++...-..++.+|++|+.|+|+.|.+...-++.+...++|+.|+|++|.|+.++.. .|..+..|+.
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~----------sf~~L~~Le~ 345 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG----------SFRVLSQLEE 345 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh----------HHHHHHHhhh
Confidence 999999888888899999999999999999888889999999999999999999998873 3667889999
Q ss_pred EeecCCCCCCccc-ccCCCCCCCEEEccCCCCCcCC-----CCCCcccccceeccccccccccCCC----CCCCcceeec
Q 046314 839 LNLNNCALTAIPE-EIGCLPSLEWLELRGNNFESLP-----SIPELPPSLKWLQASNCKRLQFLPE----IPSRPEELDA 908 (1137)
Q Consensus 839 L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-----~~~~l~~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~ 908 (1137)
|+|+.|.+..+.+ .+..+++|+.|||++|.+...- .+..++ +|+.|.+.++ +++++|. ..++|+.|++
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~-~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP-SLRKLRLTGN-QLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch-hhhheeecCc-eeeecchhhhccCcccceecC
Confidence 9999999998654 5788999999999999887322 466777 9999999986 5888884 3467777777
Q ss_pred ccc
Q 046314 909 SLL 911 (1137)
Q Consensus 909 ~~c 911 (1137)
.+-
T Consensus 424 ~~N 426 (873)
T KOG4194|consen 424 GDN 426 (873)
T ss_pred CCC
Confidence 654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=7.7e-23 Score=267.69 Aligned_cols=311 Identities=26% Similarity=0.413 Sum_probs=257.5
Q ss_pred ccCCC-CCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC-cccccceeecccCC-c
Q 046314 549 AFTNM-SSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF-KPKNLIELNLPFSK-I 625 (1137)
Q Consensus 549 ~f~~l-~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~-i 625 (1137)
.|..+ .+||.|.+.++. ...+|..+. +.+|+.|++.++.++.+|..+ .+.+|+.|+|+++. +
T Consensus 583 ~~~~lp~~Lr~L~~~~~~-------------l~~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYP-------------LRCMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL 647 (1153)
T ss_pred chhhcCcccEEEEecCCC-------------CCCCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCCCc
Confidence 35554 469999997763 456676653 469999999999999999877 79999999999875 5
Q ss_pred hhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCC
Q 046314 626 VQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSN 704 (1137)
Q Consensus 626 ~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~ 704 (1137)
..++. .. .+++|+.|+|++|..+..+|. +..+++|+.|++++|..+..+|..+ ++++|+.|+|++|..+..+|..
T Consensus 648 ~~ip~-ls--~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 648 KEIPD-LS--MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred CcCCc-cc--cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc
Confidence 56643 33 345999999999998888886 7899999999999999999999876 8999999999999999888864
Q ss_pred CCCCCCceEeccCCccCCCCCcc--cCCCcEEEecCCCccccCcc--------ccCCCCCcEEecccccccccccccccC
Q 046314 705 LHFVSPVNIDCSFCVNLTEFPRI--SGNITKLNLCDTAIEEVPSS--------VECLTNLEYLYINRCKRLKRVSTSICK 774 (1137)
Q Consensus 705 ~~l~~L~~L~ls~c~~l~~~~~~--~~~L~~L~L~~~~i~~lp~~--------i~~l~~L~~L~L~~~~~l~~lp~~l~~ 774 (1137)
..+|+.|+++++. +..+|.. +.+|++|++.++....++.. ....++|+.|+|++|.....+|.++++
T Consensus 724 --~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~ 800 (1153)
T PLN03210 724 --STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN 800 (1153)
T ss_pred --cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC
Confidence 4688999998865 6777764 45788888887554433222 233578999999999999999999999
Q ss_pred CCCCcEecccccccccccccccCCCCCcceecccCcc-ccccCchhhccccccccccCCCCCCCEEeecCCCCCCccccc
Q 046314 775 LKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGST-ISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEI 853 (1137)
Q Consensus 775 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~-i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l 853 (1137)
+++|+.|++++|..++.+|..+ ++++|+.|++++|. +..+|. ..++|+.|+|++|.++++|.++
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--------------~~~nL~~L~Ls~n~i~~iP~si 865 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--------------ISTNISDLNLSRTGIEEVPWWI 865 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--------------cccccCEeECCCCCCccChHHH
Confidence 9999999999999999898876 79999999999864 444443 1368999999999999999999
Q ss_pred CCCCCCCEEEccC-CCCCcCC-CCCCcccccceeccccccccccCC
Q 046314 854 GCLPSLEWLELRG-NNFESLP-SIPELPPSLKWLQASNCKRLQFLP 897 (1137)
Q Consensus 854 ~~l~~L~~L~Ls~-n~l~~lp-~~~~l~~~L~~L~l~~c~~L~~lp 897 (1137)
..+++|+.|+|++ ++++.+| .+..++ +|+.|++++|+.|..++
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~-~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSLNISKLK-HLETVDFSDCGALTEAS 910 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCccccccc-CCCeeecCCCccccccc
Confidence 9999999999999 6788888 777787 99999999999987654
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.1e-25 Score=246.50 Aligned_cols=298 Identities=26% Similarity=0.343 Sum_probs=250.8
Q ss_pred cCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC-cccccceeecccCCchhh
Q 046314 550 FTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF-KPKNLIELNLPFSKIVQI 628 (1137)
Q Consensus 550 f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l 628 (1137)
++.++.||.+.+..|.. ...-+|..++.+ ..|..|+|++|.++..|... ..+++..|+|++|+|..+
T Consensus 74 Ls~Lp~LRsv~~R~N~L-----------KnsGiP~diF~l-~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI 141 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNL-----------KNSGIPTDIFRL-KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI 141 (1255)
T ss_pred hccchhhHHHhhhcccc-----------ccCCCCchhccc-ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC
Confidence 45677788888766542 345689999988 58999999999999999988 788999999999999999
Q ss_pred hhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCc-CcccCCCCCC-
Q 046314 629 WEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCK-NLRSFPSNLH- 706 (1137)
Q Consensus 629 ~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~-~l~~lp~~~~- 706 (1137)
|... +..+..|-+||||+|++-...|....+.+|++|.|++|+....--..+..+++|+.|.+++.. -+..+|..+.
T Consensus 142 Pn~l-finLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 142 PNSL-FINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred CchH-HHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 7654 445558889999999987777778999999999999997654433345567888889998854 3567888875
Q ss_pred CCCCceEeccCCccCCCCCccc---CCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecc
Q 046314 707 FVSPVNIDCSFCVNLTEFPRIS---GNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCL 783 (1137)
Q Consensus 707 l~~L~~L~ls~c~~l~~~~~~~---~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 783 (1137)
+.+|..+++|. +++..+|+.. .+|+.|+|++|.|+++...++...+|++|+|+.|. +..+|..+++|+.|+.|.+
T Consensus 221 l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 221 LHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHh
Confidence 88999999986 5677777643 47899999999999999999999999999999987 5678999999999999999
Q ss_pred cccccc-cccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEE
Q 046314 784 NECLNL-EKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWL 862 (1137)
Q Consensus 784 ~~~~~~-~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 862 (1137)
.+|... +-+|+.++++.+|+.+..++|.+.-+|..++ .|..|+.|.|+.|.+..+|+.+.-++.|+.|
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglc-----------RC~kL~kL~L~~NrLiTLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLC-----------RCVKLQKLKLDHNRLITLPEAIHLLPDLKVL 367 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccccCchhhh-----------hhHHHHHhcccccceeechhhhhhcCCccee
Confidence 988764 6789999999999999999999999998765 4788999999999999999999999999999
Q ss_pred EccCCCCCcCC
Q 046314 863 ELRGNNFESLP 873 (1137)
Q Consensus 863 ~Ls~n~l~~lp 873 (1137)
||..|.---.|
T Consensus 368 DlreNpnLVMP 378 (1255)
T KOG0444|consen 368 DLRENPNLVMP 378 (1255)
T ss_pred eccCCcCccCC
Confidence 99998544344
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=2.4e-24 Score=228.22 Aligned_cols=248 Identities=21% Similarity=0.279 Sum_probs=191.2
Q ss_pred cccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC-cccccceeecccCCch
Q 046314 548 RAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF-KPKNLIELNLPFSKIV 626 (1137)
Q Consensus 548 ~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~ 626 (1137)
....++..|.+|.++.| ....+|..+..+. +++.|+.++|.+..+|... .+.+|+.|+.++|.+.
T Consensus 62 ~dl~nL~~l~vl~~~~n-------------~l~~lp~aig~l~-~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDN-------------KLSQLPAAIGELE-ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred HhhhcccceeEEEeccc-------------hhhhCCHHHHHHH-HHHHhhcccchHhhccHHHhhhhhhhhhhcccccee
Confidence 34566777777777554 4567777777664 6777888888888888776 7778888888888888
Q ss_pred hhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCC
Q 046314 627 QIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLH 706 (1137)
Q Consensus 627 ~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~ 706 (1137)
.+++++..+. .|..|+..+|++....+++..+..|..|++.+|... .+|+..-+++.|++|+... +.++.+|..++
T Consensus 128 el~~~i~~~~--~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg 203 (565)
T KOG0472|consen 128 ELPDSIGRLL--DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNS-NLLETLPPELG 203 (565)
T ss_pred ecCchHHHHh--hhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccch-hhhhcCChhhc
Confidence 8877766655 788888888887777777778888888888887544 4444444588888888765 46788888875
Q ss_pred -CCCCceEeccCCccCCCCCcccC--CCcEEEecCCCccccCcccc-CCCCCcEEecccccccccccccccCCCCCcEec
Q 046314 707 -FVSPVNIDCSFCVNLTEFPRISG--NITKLNLCDTAIEEVPSSVE-CLTNLEYLYINRCKRLKRVSTSICKLKSLIWLC 782 (1137)
Q Consensus 707 -l~~L~~L~ls~c~~l~~~~~~~~--~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 782 (1137)
+.+|+.|++.. .++..+|++.+ .|++|+++.|.|+.+|.... ++++|..|||.+|+ ++..|..++.+.+|++|+
T Consensus 204 ~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 204 GLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLD 281 (565)
T ss_pred chhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhc
Confidence 78888888877 45667776555 57889999999999998855 89999999999987 567899999999999999
Q ss_pred ccccccccccccccCCCCCcceecccCccccccCc
Q 046314 783 LNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPH 817 (1137)
Q Consensus 783 L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~ 817 (1137)
+++|.+ ..+|..+++| .|+.|-+.||.+.++-.
T Consensus 282 lSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 282 LSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred ccCCcc-ccCCcccccc-eeeehhhcCCchHHHHH
Confidence 999864 4578889999 99999999988875543
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=1.3e-23 Score=222.64 Aligned_cols=317 Identities=28% Similarity=0.343 Sum_probs=238.2
Q ss_pred ccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccc
Q 046314 535 LNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKN 614 (1137)
Q Consensus 535 ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~ 614 (1137)
+++...+...++++... |+.|+.|+.-.| ....+|+.+..+ .+|..|++..|.+..+|..-++..
T Consensus 165 l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N-------------~L~tlP~~lg~l-~~L~~LyL~~Nki~~lPef~gcs~ 229 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIA-MKRLKHLDCNSN-------------LLETLPPELGGL-ESLELLYLRRNKIRFLPEFPGCSL 229 (565)
T ss_pred hhccccchhhCCHHHHH-HHHHHhcccchh-------------hhhcCChhhcch-hhhHHHHhhhcccccCCCCCccHH
Confidence 34444445556666665 899999988544 467899999888 489999999999999996559999
Q ss_pred cceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEecc
Q 046314 615 LIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQ 693 (1137)
Q Consensus 615 L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~ 693 (1137)
|++|++..|.|+.++.... ..+++|..|||..|++ ++.|+ +..+.+|++||+++| .+..+|.+++++ +|+.|-+.
T Consensus 230 L~Elh~g~N~i~~lpae~~-~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 230 LKELHVGENQIEMLPAEHL-KHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALE 305 (565)
T ss_pred HHHHHhcccHHHhhHHHHh-cccccceeeecccccc-ccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhc
Confidence 9999999999999976653 2344999999999984 66666 789999999999998 466789999999 99999998
Q ss_pred CCcCcc------------------c-------------------CCCC-----CCCCCCceEeccCCccCCCCCccc---
Q 046314 694 GCKNLR------------------S-------------------FPSN-----LHFVSPVNIDCSFCVNLTEFPRIS--- 728 (1137)
Q Consensus 694 ~c~~l~------------------~-------------------lp~~-----~~l~~L~~L~ls~c~~l~~~~~~~--- 728 (1137)
||+.-+ + .|.. -...+.+.|++++ ..++.+|.-.
T Consensus 306 GNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea 384 (565)
T KOG0472|consen 306 GNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEA 384 (565)
T ss_pred CCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHH
Confidence 875210 0 0000 0134455666665 4555566421
Q ss_pred ---CCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCccee
Q 046314 729 ---GNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYI 805 (1137)
Q Consensus 729 ---~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 805 (1137)
.-++..++++|++.++|..+..+..+.+.-+..++..+..|..++.+++|..|+|++|. +..+|..++.+..|+.|
T Consensus 385 ~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~L 463 (565)
T KOG0472|consen 385 AKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTL 463 (565)
T ss_pred hhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhhee
Confidence 12578899999999999988888777776666666778888889999999999999874 67789999999999999
Q ss_pred cccCccccccCchhhccccccc-------------cccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcC
Q 046314 806 GAHGSTISQLPHLLSHLVSLHA-------------SLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESL 872 (1137)
Q Consensus 806 ~l~~n~i~~lp~~l~~l~~L~~-------------~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 872 (1137)
+++.|.+..+|..+-.+..++. ..+.++.+|..|||.+|.+..+|+.++++++|++|+|+||.|. .
T Consensus 464 nlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~ 542 (565)
T KOG0472|consen 464 NLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-Q 542 (565)
T ss_pred cccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-C
Confidence 9999999999886544332211 1245567777777777777777777777777777777777776 4
Q ss_pred C
Q 046314 873 P 873 (1137)
Q Consensus 873 p 873 (1137)
|
T Consensus 543 P 543 (565)
T KOG0472|consen 543 P 543 (565)
T ss_pred C
Confidence 4
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=4.9e-23 Score=239.70 Aligned_cols=319 Identities=20% Similarity=0.218 Sum_probs=224.3
Q ss_pred ccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC-cccccceeecccCCc
Q 046314 547 SRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF-KPKNLIELNLPFSKI 625 (1137)
Q Consensus 547 ~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i 625 (1137)
-++.++.-+|+.|++++|. ...+|..+..++ .|+.|+++.|-+.++|... ++.+|++|+|.+|.+
T Consensus 38 l~~~~~~v~L~~l~lsnn~-------------~~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l 103 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQ-------------ISSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL 103 (1081)
T ss_pred hHHhhheeeeEEeeccccc-------------cccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchh
Confidence 3444445559999998874 566777777775 7999999999999998776 788999999999999
Q ss_pred hhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCC-------------------CCccccCccccCCCc
Q 046314 626 VQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNC-------------------TNLAWVPSSIQNFNH 686 (1137)
Q Consensus 626 ~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~-------------------~~l~~~p~~i~~L~~ 686 (1137)
..+|.+...++ +|++||+|+|.+....+-+..+..++.+..++| .....++..+..+++
T Consensus 104 ~~lP~~~~~lk--nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 104 QSLPASISELK--NLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred hcCchhHHhhh--cccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe
Confidence 98888887777 999999999887655444555555555554444 444445555555555
Q ss_pred CceEeccCCcCc----------ccCCC--------CCCCCCCceEeccCCccCCCCCc-ccCCCcEEEecCCCccccCcc
Q 046314 687 LSLLCFQGCKNL----------RSFPS--------NLHFVSPVNIDCSFCVNLTEFPR-ISGNITKLNLCDTAIEEVPSS 747 (1137)
Q Consensus 687 L~~L~L~~c~~l----------~~lp~--------~~~l~~L~~L~ls~c~~l~~~~~-~~~~L~~L~L~~~~i~~lp~~ 747 (1137)
.|+|++|... +.+-. .+..++|+.|+.+.|...+..+. ...+|++++++.+.+..+|++
T Consensus 182 --~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w 259 (1081)
T KOG0618|consen 182 --QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW 259 (1081)
T ss_pred --eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH
Confidence 5666665443 11110 01135566666666665544443 334889999999999999999
Q ss_pred ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccc--
Q 046314 748 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSL-- 825 (1137)
Q Consensus 748 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L-- 825 (1137)
++.+.+|+.|++.+|.+ ..+|..+...++|+.|.+..|. ++.+|..++.+++|+.|+|..|+|..+|..+-...+.
T Consensus 260 i~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASL 337 (1081)
T ss_pred HHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHH
Confidence 99999999999999987 6778888888889888888875 5567777888889999999998888887643111100
Q ss_pred ------------------------ccc-------------ccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCC
Q 046314 826 ------------------------HAS-------------LLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGN 867 (1137)
Q Consensus 826 ------------------------~~~-------------~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n 867 (1137)
..+ .+.++.+|+.|+|++|.+..+|. .+.+++.|++|+||||
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence 000 24457788888888888888775 4677778888888888
Q ss_pred CCCcCC-CCCCcccccceec
Q 046314 868 NFESLP-SIPELPPSLKWLQ 886 (1137)
Q Consensus 868 ~l~~lp-~~~~l~~~L~~L~ 886 (1137)
.++.+| ++..+. .|+.|.
T Consensus 418 kL~~Lp~tva~~~-~L~tL~ 436 (1081)
T KOG0618|consen 418 KLTTLPDTVANLG-RLHTLR 436 (1081)
T ss_pred hhhhhhHHHHhhh-hhHHHh
Confidence 777666 444333 444443
No 15
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.83 E-value=2e-21 Score=191.69 Aligned_cols=132 Identities=35% Similarity=0.603 Sum_probs=115.6
Q ss_pred EEEcccccccCCchHHHHHHHHhcC--CCcEEEcC-CCCCCCcchHHHHHHhhhcceeEEEeccccccchhhHHHHHHHH
Q 046314 12 VFLSFRGEDTRENFTSHLYAALCGK--KIKTFIDE-DLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWCLNELVKIL 88 (1137)
Q Consensus 12 vFis~~~~d~r~~~~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~~ 88 (1137)
|||||++.|++..|+++|..+|+++ |+++|+++ |+.+|..+.+++.++|++||++|+|+|++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999555688999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--CeEEEEEeecCccccc-ccccchHHHHHHHHHHhhhh--HHHHHHHHHHHH
Q 046314 89 KCKNLKG--QTVIPIYYHVSPSDVR-KQTGTFGEGFVKLEQQFKEK--AETVRKWRDAMI 143 (1137)
Q Consensus 89 ~~~~~~~--~~v~pvfy~v~p~~vr-~~~g~~~~~~~~~~~~~~~~--~~~v~~w~~aL~ 143 (1137)
++....+ .+|+||||+|++++++ .+.+.|+.+|..+..-.... ......|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9996654 8999999999999999 79999999887776543332 467889998865
No 16
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.79 E-value=5.9e-19 Score=174.62 Aligned_cols=136 Identities=41% Similarity=0.718 Sum_probs=115.5
Q ss_pred cccEEEcccc-cccCCchHHHHHHHHhcCCCcEEEcCCCCCCCcchHHHHHHhhhcceeEEEeccccccchhhHHHHHHH
Q 046314 9 NYDVFLSFRG-EDTRENFTSHLYAALCGKKIKTFIDEDLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWCLNELVKI 87 (1137)
Q Consensus 9 ~~dvFis~~~-~d~r~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~ 87 (1137)
+|||||||++ +|+++.|+.+|..+|...|+.+|.|+....|.... +|.++|++|+++|+|+|++|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 56678999999999999999999998544444444 999999999999999999999999999999999
Q ss_pred HHhhhc-CCCeEEEEEeecCcccccccccchHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 046314 88 LKCKNL-KGQTVIPIYYHVSPSDVRKQTGTFGEGFVKLEQQFKEKAETVRKWRDAMIKTS 146 (1137)
Q Consensus 88 ~~~~~~-~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~~ 146 (1137)
+++... ...+||||+|+..|+++..+.+.++.++.....+......+ +.|+.++..++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 998754 66899999999999999999999999998874444333333 78998887664
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2.4e-18 Score=208.69 Aligned_cols=259 Identities=19% Similarity=0.210 Sum_probs=190.0
Q ss_pred CCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhh
Q 046314 554 SSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKR 633 (1137)
Q Consensus 554 ~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~ 633 (1137)
.+-..|+++++. ...+|..+ +.+|+.|++.+|.++.+|.. +++|++|+|++|+++.++..
T Consensus 201 ~~~~~LdLs~~~-------------LtsLP~~l---~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l-- 260 (788)
T PRK15387 201 NGNAVLNVGESG-------------LTTLPDCL---PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL-- 260 (788)
T ss_pred CCCcEEEcCCCC-------------CCcCCcch---hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc--
Confidence 446677776653 34567654 34789999999999998864 67899999999999888642
Q ss_pred hccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceE
Q 046314 634 YVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNI 713 (1137)
Q Consensus 634 ~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L 713 (1137)
. ++|+.|+|++|.+. .+|. ...+|+.|++++|. +..+|. .+++|+.|+|++| .+..+|.. ..+|+.|
T Consensus 261 -p--~sL~~L~Ls~N~L~-~Lp~--lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L 327 (788)
T PRK15387 261 -P--PGLLELSIFSNPLT-HLPA--LPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDN-QLASLPAL--PSELCKL 327 (788)
T ss_pred -c--cccceeeccCCchh-hhhh--chhhcCEEECcCCc-cccccc---cccccceeECCCC-ccccCCCC--ccccccc
Confidence 2 38899999998754 4444 23678889998885 445664 2467899999886 45566652 2457777
Q ss_pred eccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccc
Q 046314 714 DCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSW 793 (1137)
Q Consensus 714 ~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 793 (1137)
.+++| .++.+|....+|+.|+|++|++..+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|... .+|
T Consensus 328 ~Ls~N-~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP 398 (788)
T PRK15387 328 WAYNN-QLTSLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLP 398 (788)
T ss_pred ccccC-ccccccccccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCC
Confidence 88774 5567777777888999999988888863 356778888888755 45643 356888888888654 355
Q ss_pred cccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCc
Q 046314 794 SELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 794 ~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
.. .++|+.|++++|.++.+|.. +.+|+.|++++|+++.+|..+..+++|+.|+|++|+|+.
T Consensus 399 ~l---~s~L~~LdLS~N~LssIP~l--------------~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 399 VL---PSELKELMVSGNRLTSLPML--------------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred Cc---ccCCCEEEccCCcCCCCCcc--------------hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 43 35788888888888888752 245777888888888888888888888999998888874
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=3.5e-18 Score=207.28 Aligned_cols=254 Identities=19% Similarity=0.187 Sum_probs=162.3
Q ss_pred ccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccc
Q 046314 535 LNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKN 614 (1137)
Q Consensus 535 ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~ 614 (1137)
+|++......++.... ++|+.|.+.+|. ...+|. +|++|++|++++|.++.+|.. +.+
T Consensus 206 LdLs~~~LtsLP~~l~---~~L~~L~L~~N~-------------Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l--p~s 263 (788)
T PRK15387 206 LNVGESGLTTLPDCLP---AHITTLVIPDNN-------------LTSLPA----LPPELRTLEVSGNQLTSLPVL--PPG 263 (788)
T ss_pred EEcCCCCCCcCCcchh---cCCCEEEccCCc-------------CCCCCC----CCCCCcEEEecCCccCcccCc--ccc
Confidence 4555544334444322 367777776553 334443 345788888888888877753 467
Q ss_pred cceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccC
Q 046314 615 LIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQG 694 (1137)
Q Consensus 615 L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~ 694 (1137)
|+.|++++|.+..++.. .. +|+.|+|++|++. .+|. .+++|+.|+|++|.. ..+|.. ..+|+.|++++
T Consensus 264 L~~L~Ls~N~L~~Lp~l---p~--~L~~L~Ls~N~Lt-~LP~--~p~~L~~LdLS~N~L-~~Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 264 LLELSIFSNPLTHLPAL---PS--GLCKLWIFGNQLT-SLPV--LPPGLQELSVSDNQL-ASLPAL---PSELCKLWAYN 331 (788)
T ss_pred cceeeccCCchhhhhhc---hh--hcCEEECcCCccc-cccc--cccccceeECCCCcc-ccCCCC---ccccccccccc
Confidence 77888888877776542 12 6777888887654 3443 246788888887743 344542 23466677776
Q ss_pred CcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccC
Q 046314 695 CKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICK 774 (1137)
Q Consensus 695 c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~ 774 (1137)
|. +..+|.. ..+|+.|++++ +.++.+|....+|+.|++++|.+..+|.. ..+|+.|+|++|.+.. +|..
T Consensus 332 N~-L~~LP~l--p~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l--- 400 (788)
T PRK15387 332 NQ-LTSLPTL--PSGLQELSVSD-NQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL--- 400 (788)
T ss_pred Cc-ccccccc--ccccceEecCC-CccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---
Confidence 53 4556642 24677788877 45667777777778888888887777753 3467788888776553 4443
Q ss_pred CCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC
Q 046314 775 LKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA 848 (1137)
Q Consensus 775 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~ 848 (1137)
.++|+.|++++|... .+|.. ..+|+.|++++|.|+.+|..+. .+++|+.|+|++|++++
T Consensus 401 ~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~-----------~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 401 PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLI-----------HLSSETTVNLEGNPLSE 459 (788)
T ss_pred ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHh-----------hccCCCeEECCCCCCCc
Confidence 356777888887644 35543 2456777888888887776543 45677788888887775
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=3.5e-17 Score=200.29 Aligned_cols=227 Identities=20% Similarity=0.335 Sum_probs=120.6
Q ss_pred CCCceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeecc
Q 046314 590 PEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLW 669 (1137)
Q Consensus 590 ~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~ 669 (1137)
|+.|+.|++++|.++.+|..+. .+|++|++++|+++.++... .. +|+.|+|++|.+. .+|.. -..+|+.|+++
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l--~~--~L~~L~Ls~N~L~-~LP~~-l~s~L~~L~Ls 270 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATL--PD--TIQEMELSINRIT-ELPER-LPSALQSLDLF 270 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhh--hc--cccEEECcCCccC-cCChh-HhCCCCEEECc
Confidence 4567777777777777776543 46777777777776665432 12 5677777776644 33321 12356666666
Q ss_pred CCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCcccc
Q 046314 670 NCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVE 749 (1137)
Q Consensus 670 ~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~ 749 (1137)
+|. +..+|..+. ++|+.|++++| .+..+|..+ ..+|+.|++++|.+..+|..+.
T Consensus 271 ~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l----------------------p~sL~~L~Ls~N~Lt~LP~~l~ 324 (754)
T PRK15370 271 HNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHL----------------------PSGITHLNVQSNSLTALPETLP 324 (754)
T ss_pred CCc-cCccccccC--CCCcEEECCCC-ccccCcccc----------------------hhhHHHHHhcCCccccCCcccc
Confidence 553 334554443 35666666654 333444322 1244555555555555554332
Q ss_pred CCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccc
Q 046314 750 CLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASL 829 (1137)
Q Consensus 750 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~ 829 (1137)
++|+.|++++|.+.. +|..+. ++|+.|++++|... .+|..+. ++|+.|++++|.++.+|..+.
T Consensus 325 --~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--------- 387 (754)
T PRK15370 325 --PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP--------- 387 (754)
T ss_pred --ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH---------
Confidence 455555555555432 444332 45566666655432 3443332 456666666666665554331
Q ss_pred cCCCCCCCEEeecCCCCCCccccc----CCCCCCCEEEccCCCCC
Q 046314 830 LSGLSSLNWLNLNNCALTAIPEEI----GCLPSLEWLELRGNNFE 870 (1137)
Q Consensus 830 l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~Ls~n~l~ 870 (1137)
.+|+.|++++|+++.+|..+ ..++++..|+|.+|.+.
T Consensus 388 ----~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 ----AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ----HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 24555666666666554432 33455666666666554
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=8.1e-19 Score=204.93 Aligned_cols=259 Identities=23% Similarity=0.309 Sum_probs=155.7
Q ss_pred CCceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccC
Q 046314 591 EKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWN 670 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~ 670 (1137)
.+|+.|..++|++..+-..+.+.+|+++++++|++..+++-. ..+.+|+.|++.+|.+...+..+....+|+.|....
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi--~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWI--GACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcchHHH--HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 378999999999987777778889999999999999888444 445599999999998743333478888999999988
Q ss_pred CCCccccCccccCCCcCceEeccCCcCcccCCCCCC---CCCCceEeccCCccCCCCCcc----cCCCcEEEecCCCccc
Q 046314 671 CTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLH---FVSPVNIDCSFCVNLTEFPRI----SGNITKLNLCDTAIEE 743 (1137)
Q Consensus 671 ~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~---l~~L~~L~ls~c~~l~~~~~~----~~~L~~L~L~~~~i~~ 743 (1137)
| .+..+|+....+++|++|+|..| ++.++|..+. ..+|..|..+. ..+...|.. ...|+.|++.+|.+++
T Consensus 297 n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 297 N-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred h-hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccc
Confidence 7 46777888888999999999874 5667776432 11233333322 223333321 1134555555555542
Q ss_pred -cCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhcc
Q 046314 744 -VPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHL 822 (1137)
Q Consensus 744 -lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l 822 (1137)
.-+-+.++.+|+.|+|++|++.......+.+++.|++|+||||. ++.+|..+.+++.|++|...+|.+..+|.
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe----- 447 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPE----- 447 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechh-----
Confidence 11224455555555555554333222334555555555555553 33344555555555555555555555553
Q ss_pred ccccccccCCCCCCCEEeecCCCCCC--cccccCCCCCCCEEEccCCC
Q 046314 823 VSLHASLLSGLSSLNWLNLNNCALTA--IPEEIGCLPSLEWLELRGNN 868 (1137)
Q Consensus 823 ~~L~~~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~ 868 (1137)
+..++.|+.+|++.|+++. +|..... ++|++|||+||.
T Consensus 448 -------~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 448 -------LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred -------hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 3345555555555555554 2222211 555555555553
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=4.7e-16 Score=190.48 Aligned_cols=247 Identities=17% Similarity=0.278 Sum_probs=175.0
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCccc
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPK 613 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~ 613 (1137)
.++++......++... .++|+.|++++|. ...+|..+. .+|++|++++|.++.+|..+ +.
T Consensus 182 ~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~-------------LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l-~~ 241 (754)
T PRK15370 182 ELRLKILGLTTIPACI---PEQITTLILDNNE-------------LKSLPENLQ---GNIKTLYANSNQLTSIPATL-PD 241 (754)
T ss_pred EEEeCCCCcCcCCccc---ccCCcEEEecCCC-------------CCcCChhhc---cCCCEEECCCCccccCChhh-hc
Confidence 3455544433444322 3579999998774 445666543 48999999999999999865 35
Q ss_pred ccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEec
Q 046314 614 NLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCF 692 (1137)
Q Consensus 614 ~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L 692 (1137)
+|+.|+|++|++..++.... . +|+.|+|++|++. .+|+ + .++|+.|++++|. +..+|..+. ++|+.|++
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s--~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~L 311 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--S--ALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNS-IRTLPAHLP--SGITHLNV 311 (754)
T ss_pred cccEEECcCCccCcCChhHh--C--CCCEEECcCCccC-cccccc--CCCCcEEECCCCc-cccCcccch--hhHHHHHh
Confidence 89999999999998876542 3 8999999999866 4564 3 2589999999985 445665543 47888899
Q ss_pred cCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccc
Q 046314 693 QGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSI 772 (1137)
Q Consensus 693 ~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l 772 (1137)
++|. +..+|..+ ..+|+.|++++|.+..+|..+. ++|+.|++++|++. .+|..+
T Consensus 312 s~N~-Lt~LP~~l----------------------~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l 365 (754)
T PRK15370 312 QSNS-LTALPETL----------------------PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL 365 (754)
T ss_pred cCCc-cccCCccc----------------------cccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh
Confidence 8864 34454322 1356667777777777776553 67888888887654 456554
Q ss_pred cCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC
Q 046314 773 CKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA 848 (1137)
Q Consensus 773 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~ 848 (1137)
.++|+.|+|++|... .+|..+. .+|+.|++++|++..+|.++.++ +..++++..|+|.+|.++.
T Consensus 366 --p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~-------~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 366 --PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHF-------RGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred --cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHH-------hhcCCCccEEEeeCCCccH
Confidence 357888888888644 4565543 36888999999999888766543 2346888999999998873
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=6.9e-16 Score=145.98 Aligned_cols=156 Identities=24% Similarity=0.354 Sum_probs=98.6
Q ss_pred ceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCC
Q 046314 639 KLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFC 718 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c 718 (1137)
+...|.||+|++....|.+..+.||+.|++++| .+.++|.+++.+++|+.|++.-
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm------------------------ 88 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM------------------------ 88 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch------------------------
Confidence 444555555555555555555556666666554 3445566666666666665542
Q ss_pred ccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCC
Q 046314 719 VNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGN 798 (1137)
Q Consensus 719 ~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~ 798 (1137)
|++..+|.+|+.++.|+.|||.+|++.+ ..+|..|-.
T Consensus 89 --------------------nrl~~lprgfgs~p~levldltynnl~e-----------------------~~lpgnff~ 125 (264)
T KOG0617|consen 89 --------------------NRLNILPRGFGSFPALEVLDLTYNNLNE-----------------------NSLPGNFFY 125 (264)
T ss_pred --------------------hhhhcCccccCCCchhhhhhcccccccc-----------------------ccCCcchhH
Confidence 3333445556666666666666655432 234455555
Q ss_pred CCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC
Q 046314 799 LKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 799 l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
|+.|+.|++++|.+.-+|..++ .+++|+.|.+..|.+.++|..++.++.|++|.+.||.++.+|
T Consensus 126 m~tlralyl~dndfe~lp~dvg-----------~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVG-----------KLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhh-----------hhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 5666666666666666666543 356677777888888888888888899999999999988876
No 23
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.48 E-value=1.9e-14 Score=133.59 Aligned_cols=91 Identities=31% Similarity=0.641 Sum_probs=77.9
Q ss_pred EEEcccccccCCchHHHHHHHHhcCCCcEEEcCCCCCCCcchHHHHHHhhhcceeEEEeccccccchhhHHHHHHHHHhh
Q 046314 12 VFLSFRGEDTRENFTSHLYAALCGKKIKTFIDEDLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWCLNELVKILKCK 91 (1137)
Q Consensus 12 vFis~~~~d~r~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~~~~~ 91 (1137)
|||||+++| +.|+.+|.+.|+++|+++|.|.++.+|+.+...|.++|++|+..|+++|++|..|.||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~--- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW--- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence 899999999 789999999999999999999999999999999999999999999999999999999999998873
Q ss_pred hcCCCeEEEEEeecCcccc
Q 046314 92 NLKGQTVIPIYYHVSPSDV 110 (1137)
Q Consensus 92 ~~~~~~v~pvfy~v~p~~v 110 (1137)
..++.|+||. +++.++
T Consensus 76 -~~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 76 -KRGKPIIPVR--LDPCEL 91 (102)
T ss_dssp -CTSESEEEEE--CSGGGS
T ss_pred -HCCCEEEEEE--ECCcCC
Confidence 3555899997 555544
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.5e-15 Score=143.66 Aligned_cols=166 Identities=26% Similarity=0.387 Sum_probs=124.3
Q ss_pred CcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCc
Q 046314 731 ITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGS 810 (1137)
Q Consensus 731 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n 810 (1137)
++.|.|++|++..+|+.|..+.+|+.|++++|. .+.+|.+++.++.|+.|+++-|. +..+|..|+.++.|+.|++.+|
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhcccc
Confidence 444555566666666666666666666666655 34566666677777777766543 4567888888899999999988
Q ss_pred ccc--ccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC-CCCCcccccceecc
Q 046314 811 TIS--QLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP-SIPELPPSLKWLQA 887 (1137)
Q Consensus 811 ~i~--~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l 887 (1137)
++. .+|..+ -.+..|+-|.|++|.+.-+|..++.+++|+.|.+..|.+-++| .+..+. .|+.|.+
T Consensus 113 nl~e~~lpgnf-----------f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt-~lrelhi 180 (264)
T KOG0617|consen 113 NLNENSLPGNF-----------FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLT-RLRELHI 180 (264)
T ss_pred ccccccCCcch-----------hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHH-HHHHHhc
Confidence 887 466543 3456778889999999999999999999999999999999999 888888 9999999
Q ss_pred ccccccccCCCCCCCcceeeccccccc
Q 046314 888 SNCKRLQFLPEIPSRPEELDASLLQKL 914 (1137)
Q Consensus 888 ~~c~~L~~lp~lp~~L~~L~~~~c~~L 914 (1137)
.++. ++ .+||-|-.|++.+-.+.
T Consensus 181 qgnr-l~---vlppel~~l~l~~~k~v 203 (264)
T KOG0617|consen 181 QGNR-LT---VLPPELANLDLVGNKQV 203 (264)
T ss_pred ccce-ee---ecChhhhhhhhhhhHHH
Confidence 9864 33 45666667766554433
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=1.7e-15 Score=161.65 Aligned_cols=265 Identities=17% Similarity=0.117 Sum_probs=149.0
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC--c
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF--K 611 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~--~ 611 (1137)
.+++..+..-.|++.+|+.+++||.|+|+.|.+ ..--|+.+..++.-++.+..++|.|+.+|... +
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I------------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI------------SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccch------------hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 344445555567777888888888888876642 22234444555433333344447777777765 6
Q ss_pred ccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccC-CCCCCCcccEeeccCCCCc------------cccC
Q 046314 612 PKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIP-DPSETPSLERINLWNCTNL------------AWVP 678 (1137)
Q Consensus 612 l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p-~~~~l~~L~~L~L~~~~~l------------~~~p 678 (1137)
+..|+.|.+.-|++.-+.... +..+++|..|.+-.|.+..... .+..+.+++.+.+..|... ...|
T Consensus 139 L~slqrLllNan~i~Cir~~a-l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDA-LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHHhcChhhhcchhHHH-HHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 777777777777766554332 2333467777777766433333 2566677777776655411 1112
Q ss_pred ccccCCCcCceEeccCCcCcccCCCCCCCCCCceE---eccCCccCCCCC----cccCCCcEEEecCCCccccC-ccccC
Q 046314 679 SSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNI---DCSFCVNLTEFP----RISGNITKLNLCDTAIEEVP-SSVEC 750 (1137)
Q Consensus 679 ~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L---~ls~c~~l~~~~----~~~~~L~~L~L~~~~i~~lp-~~i~~ 750 (1137)
.+++......-..+.+ .....++..-...+++.+ -.+.|.-....| ..+.+|++|+|++|+|+.+. .+|..
T Consensus 218 ietsgarc~~p~rl~~-~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYY-KRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhcccceecchHHHHH-HHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 2222222111111111 111111111111111111 111222222222 13447788888888888774 44778
Q ss_pred CCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccc
Q 046314 751 LTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTI 812 (1137)
Q Consensus 751 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i 812 (1137)
+..|+.|.|..|++-..-...|.++..|+.|+|.+|.+....|..|..+.+|..|++-.|.+
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 88888888888877666566677888888888888888888888888888888887766544
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.45 E-value=7.8e-12 Score=163.55 Aligned_cols=295 Identities=16% Similarity=0.156 Sum_probs=189.4
Q ss_pred cCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHH
Q 046314 179 ISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
.+|....++|-|..-++.+.. ....+++.|.|++|.||||++..+..+ ++.++|+. +.. ...+...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~---~d~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDE---SDNQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCc---ccCCHHHH
Confidence 467778889999876666543 235789999999999999999998853 23678885 221 23344555
Q ss_pred HHHHHHHHhCcccc-----------CCCCCc---cHHHHHhhc--CCceEEEEeCCCCHH------HHHHHhcccCCCCC
Q 046314 259 HKQVVSLLLGERIE-----------MGGPNI---PAYTLERLR--RTKVFFVLDDVSKFE------QLKYFVGWLHGFCP 316 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~-----------~~~~~~---~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~ 316 (1137)
...++..+...... ...... ...+...+. +.+++|||||++..+ .+..++. ...+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~---~~~~ 151 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR---HQPE 151 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH---hCCC
Confidence 55555555311100 000111 112222232 689999999997642 2333343 2346
Q ss_pred CCEEEEEeCChhhHH--hhCCCCccEEEEc----cCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 317 GSRIVVTTRDKQVLR--KHGVNDEYVYEVE----RLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 317 gsrIIiTTR~~~v~~--~~~~~~~~~~~v~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
+.++|||||...-.. ..... ....++. +|+.+|+.++|....... . + .+.+.++.+.++|+|+++..+
T Consensus 152 ~~~lv~~sR~~~~~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~-~---~~~~~~l~~~t~Gwp~~l~l~ 225 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSSP-I-E---AAESSRLCDDVEGWATALQLI 225 (903)
T ss_pred CeEEEEEeCCCCCCchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCCC-C-C---HHHHHHHHHHhCChHHHHHHH
Confidence 778999999853211 11111 1145666 999999999998765322 1 1 455678999999999999999
Q ss_pred hhhhccCCHHHHHHHHHHHhccCCcccHHHHHHH-hhccCChhhHhHhhhcccccCCcCHHHHHHHHhhcCCchhHHHHH
Q 046314 391 GSSLHQKSKLDWENVLDNLKQISGVSRIYNVLRI-SYEELSFEEKSTFLDIACFFKGECKDRVLMLLHDRQYNVTHVLSI 469 (1137)
Q Consensus 391 g~~L~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~~l~~ 469 (1137)
+..+.+.... -......+...+. ..+.+.+.- .++.||++.++.++.+|+++ .++.+.+..+.+ .-++...++.
T Consensus 226 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~ 300 (903)
T PRK04841 226 ALSARQNNSS-LHDSARRLAGINA-SHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEE 300 (903)
T ss_pred HHHHhhCCCc-hhhhhHhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHH
Confidence 8877543210 0111122222122 346665444 48999999999999999986 566665555554 2356889999
Q ss_pred HHhccCcee-e---CCeEEehHHHHHHHHHhhhcc
Q 046314 470 LIDKSLITE-H---NNRLHMHELLQEMGQEIVRQE 500 (1137)
Q Consensus 470 L~~~sLi~~-~---~~~~~mHdll~~~~~~i~~~e 500 (1137)
|.+.+++.. . ...|.+|++++++.+.....+
T Consensus 301 l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 301 LERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 999999653 2 237999999999999887544
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=1.2e-14 Score=155.26 Aligned_cols=272 Identities=18% Similarity=0.162 Sum_probs=185.4
Q ss_pred CCCCCCceEEEEecCCCCCCCCCC--cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC--CCCCCc
Q 046314 587 DYLPEKLKYLHLHKYPLRTLPENF--KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD--PSETPS 662 (1137)
Q Consensus 587 ~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~~~l~~ 662 (1137)
..+|.+-..+.|..|.|++||+.. .+++|+.|||++|+|+.+.+. .+..+.+|-.|-+-+++.++.+|. |.++..
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 345678889999999999999876 889999999999999988544 345555776666666334556664 789999
Q ss_pred ccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCC-C-CCCCCceEeccCCccCC--CCC----------ccc
Q 046314 663 LERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSN-L-HFVSPVNIDCSFCVNLT--EFP----------RIS 728 (1137)
Q Consensus 663 L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~ls~c~~l~--~~~----------~~~ 728 (1137)
|+.|.+.-|.........+..|++|..|.+-+| .+..++.. + .+.+++++.+..+..+. .+| -..
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 999999888777777778889999999998874 45555552 2 35666666654433111 000 000
Q ss_pred C---CCcEEEecCCCccccCcc-c-cCCCCCcEEecccccccccccc-cccCCCCCcEecccccccccccccccCCCCCc
Q 046314 729 G---NITKLNLCDTAIEEVPSS-V-ECLTNLEYLYINRCKRLKRVST-SICKLKSLIWLCLNECLNLEKSWSELGNLKSF 802 (1137)
Q Consensus 729 ~---~L~~L~L~~~~i~~lp~~-i-~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 802 (1137)
+ -..-..+...++.++++. + ..+..+..=-.+.|......|. .|.+|++|+.|+|++|.....-+..|..+..+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 0 001111222223333221 1 1111221112233333333332 37889999999999998888888889999999
Q ss_pred ceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC-cccccCCCCCCCEEEccCCCCC
Q 046314 803 QYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRGNNFE 870 (1137)
Q Consensus 803 ~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~ 870 (1137)
+.|.|..|+|..+...+ |.++..|+.|+|.+|+|+. -|..|..+.+|.+|+|-+|.+.
T Consensus 301 ~eL~L~~N~l~~v~~~~----------f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGM----------FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhcCcchHHHHHHHh----------hhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999888776543 7788999999999999998 5778888999999999888664
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=5.6e-14 Score=160.25 Aligned_cols=272 Identities=20% Similarity=0.105 Sum_probs=153.6
Q ss_pred EEEecCCCC--CCCCCC-cccccceeecccCCchh-----hhhhhhhccccceeEEecCCCCCCC------ccC-CCCCC
Q 046314 596 LHLHKYPLR--TLPENF-KPKNLIELNLPFSKIVQ-----IWEEKRYVKAFKLKSINLSHSQYLI------RIP-DPSET 660 (1137)
Q Consensus 596 L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~i~~-----l~~~~~~~~l~~L~~L~Ls~n~~~~------~~p-~~~~l 660 (1137)
|+|.++.++ ..+..+ .+.+|++|+++++.+.. +...... .++|+.|+++++.+.. .++ .+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~--~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRP--QPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhh--CCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 445555543 222222 45567777777777632 2222222 2257777777765431 011 13445
Q ss_pred CcccEeeccCCCCccccCccccCCCc---CceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEec
Q 046314 661 PSLERINLWNCTNLAWVPSSIQNFNH---LSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLC 737 (1137)
Q Consensus 661 ~~L~~L~L~~~~~l~~~p~~i~~L~~---L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~ 737 (1137)
++|+.|++++|......+..+..+.+ |+.|++++|.....-...+ ...++....+|+.|+++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l---------------~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL---------------AKGLKDLPPALEKLVLG 145 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH---------------HHHHHhCCCCceEEEcC
Confidence 66777777666554444444433333 6666666654221000000 00111112467777777
Q ss_pred CCCcc-----ccCccccCCCCCcEEecccccccc----cccccccCCCCCcEeccccccccc----ccccccCCCCCcce
Q 046314 738 DTAIE-----EVPSSVECLTNLEYLYINRCKRLK----RVSTSICKLKSLIWLCLNECLNLE----KSWSELGNLKSFQY 804 (1137)
Q Consensus 738 ~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~ 804 (1137)
+|.+. .++..+..+++|++|++++|.+.+ .++..+..+++|+.|++++|.... .+...+..+++|+.
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 77766 344456677788888888887663 233445566788888888886543 23445667788888
Q ss_pred ecccCccccccC-chhhccccccccccCCCCCCCEEeecCCCCCC-----cccccCCCCCCCEEEccCCCCCcCC-----
Q 046314 805 IGAHGSTISQLP-HLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRGNNFESLP----- 873 (1137)
Q Consensus 805 L~l~~n~i~~lp-~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~lp----- 873 (1137)
|++++|.+.... ..+.. ....+.+.|++|++++|.+++ +...+..+++|+.|++++|.+..-+
T Consensus 226 L~ls~n~l~~~~~~~l~~------~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 226 LNLGDNNLTDAGAAALAS------ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred EecCCCcCchHHHHHHHH------HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 888888776411 11100 001135788888888888863 4555666788888888888887543
Q ss_pred -CCCCcccccceeccccc
Q 046314 874 -SIPELPPSLKWLQASNC 890 (1137)
Q Consensus 874 -~~~~l~~~L~~L~l~~c 890 (1137)
.+....+.|+.|++.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 300 ESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHhhcCCchhhcccCCC
Confidence 22233136666666554
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=1.6e-13 Score=156.44 Aligned_cols=256 Identities=20% Similarity=0.182 Sum_probs=162.3
Q ss_pred CceEEEEecCCCC-----CCCCCC-cccccceeecccCCchhhhhh-----hhhccccceeEEecCCCCCCCccCC-CCC
Q 046314 592 KLKYLHLHKYPLR-----TLPENF-KPKNLIELNLPFSKIVQIWEE-----KRYVKAFKLKSINLSHSQYLIRIPD-PSE 659 (1137)
Q Consensus 592 ~L~~L~l~~~~l~-----~lp~~~-~l~~L~~L~L~~n~i~~l~~~-----~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~ 659 (1137)
.|+.|+++++.++ .++... ..++|++|+++++.+...... .....+++|+.|++++|.+....+. +..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 5999999999984 344444 567799999999887631111 1223356999999999987654443 322
Q ss_pred C---CcccEeeccCCCCcc----ccCccccCC-CcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCC
Q 046314 660 T---PSLERINLWNCTNLA----WVPSSIQNF-NHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNI 731 (1137)
Q Consensus 660 l---~~L~~L~L~~~~~l~----~~p~~i~~L-~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L 731 (1137)
+ ++|++|++++|.... .+..++..+ ++|+.|++++|.....-+..+ ........+|
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~----------------~~~~~~~~~L 167 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL----------------AKALRANRDL 167 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH----------------HHHHHhCCCc
Confidence 3 569999999997552 233455666 889999999886432110000 0000111245
Q ss_pred cEEEecCCCcc-----ccCccccCCCCCcEEecccccccc----cccccccCCCCCcEecccccccccccccccC-----
Q 046314 732 TKLNLCDTAIE-----EVPSSVECLTNLEYLYINRCKRLK----RVSTSICKLKSLIWLCLNECLNLEKSWSELG----- 797 (1137)
Q Consensus 732 ~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~----- 797 (1137)
++|++++|.+. .++..+..+++|+.|++++|.+.. .++..+..+++|++|++++|......+..+.
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~ 247 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence 55566666555 344445566788888888887653 2344566778888888888876542222211
Q ss_pred CCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC-----cccccCCC-CCCCEEEccCCCC
Q 046314 798 NLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-----IPEEIGCL-PSLEWLELRGNNF 869 (1137)
Q Consensus 798 ~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l-~~L~~L~Ls~n~l 869 (1137)
..+.|+.|++++|.++.... ..+. ..+..+++|++|++++|.+++ +...+... +.|++|++.+|.+
T Consensus 248 ~~~~L~~L~l~~n~i~~~~~--~~l~----~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 248 PNISLLTLSLSCNDITDDGA--KDLA----EVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCceEEEccCCCCCcHHH--HHHH----HHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 24788999999988752100 0000 013345889999999999985 44455666 7899999988764
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.16 E-value=3.6e-10 Score=127.64 Aligned_cols=270 Identities=14% Similarity=0.110 Sum_probs=150.6
Q ss_pred CCccchhhHHHHHHHhhccC---CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHH
Q 046314 185 KGLVGLNSRIECIKSLLCVG---FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQ 261 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ 261 (1137)
.+|||+++.+++|..++... ....+.+.++|++|+|||+||+.+++++...+. ... .........+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~----~~~~~~~~~l~~- 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITS----GPALEKPGDLAA- 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eec----cchhcCchhHHH-
Confidence 57999999999999888632 233566889999999999999999998764332 111 000011111111
Q ss_pred HHHHHhCccc-cCC-----CCCccHHHHHhhcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhHHhhCC
Q 046314 262 VVSLLLGERI-EMG-----GPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKHGV 335 (1137)
Q Consensus 262 ll~~l~~~~~-~~~-----~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 335 (1137)
.+..+..... -.+ .....+.+...+.+.+..+|+|+..+..++... ..+..-|..|||...+.....-
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 1111111000 000 000111222233333333444433333222211 1234455667776543322110
Q ss_pred CCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhhccCCHHHHHHHHHHHhc--cC
Q 046314 336 NDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSLHQKSKLDWENVLDNLKQ--IS 413 (1137)
Q Consensus 336 ~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~~~~~~~w~~~l~~l~~--~~ 413 (1137)
.-...+++++++.+|..+++.+.+......- ..+....+++.|+|.|-.+..++..+ |..+. .... ..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~--~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~~~it 218 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI--EPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQKIIN 218 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCCCCcC
Confidence 0012689999999999999998875432221 14567889999999996655444432 11110 0000 00
Q ss_pred C--cccHHHHHHHhhccCChhhHhHhh-hcccccCC-cCHHHHHHHHhhcCCchhHHHH-HHHhccCceee
Q 046314 414 G--VSRIYNVLRISYEELSFEEKSTFL-DIACFFKG-ECKDRVLMLLHDRQYNVTHVLS-ILIDKSLITEH 479 (1137)
Q Consensus 414 ~--~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~ 479 (1137)
. .......+...|.+|++.++..+. .++.+..+ ...+.+...+......++..++ .|++++||...
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 0 012222356678899999888776 44656433 4567788888877778888888 69999999754
No 31
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.16 E-value=6.9e-09 Score=121.85 Aligned_cols=286 Identities=16% Similarity=0.129 Sum_probs=168.4
Q ss_pred CCCCCCCccchhhHHHHHHHhhccC--CCCeEEEEEEccCCChhhHHHHHHHHHhhccCC--ceEEEeeccchhccCcCh
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVG--FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE--GNCFIENVREEIENGVGL 255 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~s~~~~~ 255 (1137)
+...++.++||+.++++|...+... ......+.|+|++|+|||++++.+++++..... ..+++. +....+.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-----~~~~~~~ 99 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-----CQIDRTR 99 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-----CCcCCCH
Confidence 3446788999999999999988532 234566789999999999999999998866542 233333 2233455
Q ss_pred HHHHHHHHHHHhCccccC---CCCCccHHHHHhhc--CCceEEEEeCCCCHH------HHHHHhcccCCCCCCCE--EEE
Q 046314 256 VHLHKQVVSLLLGERIEM---GGPNIPAYTLERLR--RTKVFFVLDDVSKFE------QLKYFVGWLHGFCPGSR--IVV 322 (1137)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~---~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gsr--IIi 322 (1137)
..+...++.++....... ......+.+.+.+. +++++||||+++... .+..+...... .++++ +|.
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~ 178 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIG 178 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEE
Confidence 677778888776532211 11223444455554 456899999997643 34455432221 23334 566
Q ss_pred EeCChhhHHhhC-----CCCccEEEEccCCHHHHHHHHHhhccc---CCCCChh-HHHHHHHHHHHhCCCchhHHHHhhh
Q 046314 323 TTRDKQVLRKHG-----VNDEYVYEVERLNEDEGLELFYKYAFR---QSHCPEH-LTALSKKAVRYAEGNPLALEVLGSS 393 (1137)
Q Consensus 323 TTR~~~v~~~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a~~---~~~~~~~-~~~l~~~iv~~~~G~PLal~~lg~~ 393 (1137)
++.+..+..... .-....+.+++++.++..+++..++.. .....++ .+.+++......|..+.|+.++-.+
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 666554332211 111226899999999999999877532 2222222 2333333333345567777766433
Q ss_pred h-----ccC---CHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhcccccC----CcCHHH----HHHHHh
Q 046314 394 L-----HQK---SKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFFK----GECKDR----VLMLLH 457 (1137)
Q Consensus 394 L-----~~~---~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~----l~~~~~ 457 (1137)
. .+. +.+..+.+.+.+. .....-.+..|+.++|..+..++...+ ...... ...+..
T Consensus 259 ~~~a~~~~~~~I~~~~v~~a~~~~~--------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 259 GLIAEREGSRKVTEEDVRKAYEKSE--------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 2 111 3445555555441 123455678999999998888775532 122222 222333
Q ss_pred hcCC------chhHHHHHHHhccCceee
Q 046314 458 DRQY------NVTHVLSILIDKSLITEH 479 (1137)
Q Consensus 458 ~~~~------~~~~~l~~L~~~sLi~~~ 479 (1137)
..+. ....++..|.+.|+|...
T Consensus 331 ~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 331 ELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 3333 234678899999999754
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=2.7e-10 Score=129.44 Aligned_cols=262 Identities=17% Similarity=0.145 Sum_probs=154.6
Q ss_pred CCCCCCCccchhhHHHHHHHhhcc---CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCV---GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~ 256 (1137)
.|...++|+|++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.+...+. +.. ... .. . .
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~-~~---~-~ 90 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPA-LE---K-P 90 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccc-cc---C-h
Confidence 345668899999999999888753 1234567889999999999999999998764332 111 000 00 0 1
Q ss_pred HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcccC-------------------CCC
Q 046314 257 HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE--QLKYFVGWLH-------------------GFC 315 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~-------------------~~~ 315 (1137)
.....++..+ .+.-+|++|+++... ..+.+...+. ...
T Consensus 91 ~~l~~~l~~l---------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 91 GDLAAILTNL---------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred HHHHHHHHhc---------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 1111111111 123356666664321 1111111000 001
Q ss_pred CCCEEEEEeCChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhhc
Q 046314 316 PGSRIVVTTRDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSLH 395 (1137)
Q Consensus 316 ~gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~ 395 (1137)
+.+-|..|+|...+.......-...+++++++.++..+++...+......-+ .+.+..|++.|+|.|-.+..+...+
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~--~~~~~~ia~~~~G~pR~a~~~l~~~- 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID--EEGALEIARRSRGTPRIANRLLRRV- 226 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHcCCCchHHHHHHHHH-
Confidence 2344566777544332211000126899999999999999988754332222 4667899999999996544444332
Q ss_pred cCCHHHHHHHHHHHhccCC--cccHHHHHHHhhccCChhhHhHhh-hcccccCC-cCHHHHHHHHhhcCCchhHHHH-HH
Q 046314 396 QKSKLDWENVLDNLKQISG--VSRIYNVLRISYEELSFEEKSTFL-DIACFFKG-ECKDRVLMLLHDRQYNVTHVLS-IL 470 (1137)
Q Consensus 396 ~~~~~~w~~~l~~l~~~~~--~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L 470 (1137)
..|..... -..... .....+.+...+.+|++..+..+. .+..|..+ ...+.+...+......++..++ .|
T Consensus 227 ----~~~a~~~~-~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~L 301 (328)
T PRK00080 227 ----RDFAQVKG-DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYL 301 (328)
T ss_pred ----HHHHHHcC-CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHH
Confidence 11211100 000000 022334456778889999988886 55566543 4668888888877778888888 99
Q ss_pred HhccCceee
Q 046314 471 IDKSLITEH 479 (1137)
Q Consensus 471 ~~~sLi~~~ 479 (1137)
++.+||...
T Consensus 302 i~~~li~~~ 310 (328)
T PRK00080 302 IQQGFIQRT 310 (328)
T ss_pred HHcCCcccC
Confidence 999999754
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.11 E-value=2e-09 Score=135.35 Aligned_cols=327 Identities=14% Similarity=0.155 Sum_probs=195.2
Q ss_pred CccchhhHHHHHHHhhccCC-CCeEEEEEEccCCChhhHHHHHHHHHhhccCCc---eEEEeeccchhccCcChHHHHHH
Q 046314 186 GLVGLNSRIECIKSLLCVGF-PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEG---NCFIENVREEIENGVGLVHLHKQ 261 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~s~~~~~~~l~~~ 261 (1137)
.++||+.+++.|...+.... +...++.+.|.+|||||+|+++|...+.+++.. ..|-.-.+ -..-..+.+..+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~--~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFER--NIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccC--CCchHHHHHHHHH
Confidence 37999999999999887533 456799999999999999999999987665211 11110000 0000111122222
Q ss_pred HHHH-------------------HhCcccc----------CCC----------CCc--------cHHHHHhh-cCCceEE
Q 046314 262 VVSL-------------------LLGERIE----------MGG----------PNI--------PAYTLERL-RRTKVFF 293 (1137)
Q Consensus 262 ll~~-------------------l~~~~~~----------~~~----------~~~--------~~~l~~~L-~~kr~Ll 293 (1137)
++.+ +...... ..+ ... ...+.... +.+++++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 2222 2111100 000 000 11111122 3569999
Q ss_pred EEeCCCCHHH-----HHHHhcccC--CC-CCCCEEEEEeCChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCC
Q 046314 294 VLDDVSKFEQ-----LKYFVGWLH--GF-CPGSRIVVTTRDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHC 365 (1137)
Q Consensus 294 VLDdv~~~~~-----l~~l~~~~~--~~-~~gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 365 (1137)
|+||+...+. ++.++.... .+ ....-.+.|.+...-...........+.+.||+..+..++...........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 9999966443 444444332 00 001112333333311111122223489999999999999998876432222
Q ss_pred ChhHHHHHHHHHHHhCCCchhHHHHhhhhccC-------CHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhh
Q 046314 366 PEHLTALSKKAVRYAEGNPLALEVLGSSLHQK-------SKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFL 438 (1137)
Q Consensus 366 ~~~~~~l~~~iv~~~~G~PLal~~lg~~L~~~-------~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl 438 (1137)
+ .+..+.|+++.+|+|+.++.+-..+... +...|..-...+...+..+.+.+.+....+.||...++++.
T Consensus 239 ~---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 239 P---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred c---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2 5677889999999999999999988753 34456555555554443344666789999999999999999
Q ss_pred hcccccCCcCHHHHHHHHhhcCCc-hhHHHHHHHhccCceee--------CCeE---EehHHHHHHHHHhhhccCccCCC
Q 046314 439 DIACFFKGECKDRVLMLLHDRQYN-VTHVLSILIDKSLITEH--------NNRL---HMHELLQEMGQEIVRQEDIKEPG 506 (1137)
Q Consensus 439 ~~a~f~~~~~~~~l~~~~~~~~~~-~~~~l~~L~~~sLi~~~--------~~~~---~mHdll~~~~~~i~~~e~~~~~~ 506 (1137)
..||+.+.++.+.+..++...... +...++.|.+...+..+ .... ..|+++|+.+.....+..
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~~----- 390 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPESQ----- 390 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchhh-----
Confidence 999999999999999988864433 34444555554444321 1112 469999998877664432
Q ss_pred Cccccccccchhhhhhccc
Q 046314 507 KRSRLWHHKDVRHVLKHNE 525 (1137)
Q Consensus 507 ~~~~l~~~~di~~vl~~~~ 525 (1137)
|...|..+-..+..+.
T Consensus 391 ---rq~~H~~i~~lL~~~~ 406 (849)
T COG3899 391 ---RQYLHLRIGQLLEQNI 406 (849)
T ss_pred ---HHHHHHHHHHHHHHhC
Confidence 2334445555555443
No 34
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.06 E-value=3.9e-08 Score=114.26 Aligned_cols=287 Identities=15% Similarity=0.124 Sum_probs=163.3
Q ss_pred CCCCCCCccchhhHHHHHHHhhcc--CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC------ceEEEeeccchhcc
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCV--GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE------GNCFIENVREEIEN 251 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~~s~ 251 (1137)
+...++.++||++++++|...+.. .......+.|+|++|+|||++++++++++....+ ..+++. +..
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-----~~~ 84 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-----CQI 84 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-----CCC
Confidence 344567899999999999998863 2234567899999999999999999997754322 233443 233
Q ss_pred CcChHHHHHHHHHHHhC--ccccCCC---CCccHHHHHhh--cCCceEEEEeCCCCHH-----HHHHHhcccCC-CC--C
Q 046314 252 GVGLVHLHKQVVSLLLG--ERIEMGG---PNIPAYTLERL--RRTKVFFVLDDVSKFE-----QLKYFVGWLHG-FC--P 316 (1137)
Q Consensus 252 ~~~~~~l~~~ll~~l~~--~~~~~~~---~~~~~~l~~~L--~~kr~LlVLDdv~~~~-----~l~~l~~~~~~-~~--~ 316 (1137)
..+...+...++.++.. ...+..+ .+....+.+.+ .+++++||||+++... .+..+...... .. .
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~ 164 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNA 164 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCC
Confidence 34556777778877752 1111111 12233344444 3567899999997761 13333322111 11 2
Q ss_pred CCEEEEEeCChhhHHhhC-----CCCccEEEEccCCHHHHHHHHHhhcc---cCCCCChhHHHHHHHHHHHhCCCch-hH
Q 046314 317 GSRIVVTTRDKQVLRKHG-----VNDEYVYEVERLNEDEGLELFYKYAF---RQSHCPEHLTALSKKAVRYAEGNPL-AL 387 (1137)
Q Consensus 317 gsrIIiTTR~~~v~~~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~l~~~iv~~~~G~PL-al 387 (1137)
...+|.+|.+........ .-....+.+++.+.+|..+++..++- ......++..+...+++....|.|- |+
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 234455555443221110 00113689999999999999988763 2222233344555667777788884 33
Q ss_pred HHHhhhh-----cc---CCHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhcccccCC----cCHHHHH--
Q 046314 388 EVLGSSL-----HQ---KSKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFFKG----ECKDRVL-- 453 (1137)
Q Consensus 388 ~~lg~~L-----~~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~----~~~~~l~-- 453 (1137)
..+-... .+ -+.+..+.+.+.+. .....-+..+||.+++.++..++..-+. .....+.
T Consensus 245 ~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~--------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~ 316 (365)
T TIGR02928 245 DLLRVAGEIAEREGAERVTEDHVEKAQEKIE--------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEV 316 (365)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3322211 11 13344444444331 1233456678999998887777643321 1112111
Q ss_pred --HHHhhcCC------chhHHHHHHHhccCceee
Q 046314 454 --MLLHDRQY------NVTHVLSILIDKSLITEH 479 (1137)
Q Consensus 454 --~~~~~~~~------~~~~~l~~L~~~sLi~~~ 479 (1137)
.+....|. .....+..|...|||+..
T Consensus 317 y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 317 YKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 22232232 245678889999999865
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=8.2e-11 Score=146.92 Aligned_cols=251 Identities=23% Similarity=0.282 Sum_probs=129.3
Q ss_pred CCceEEEEecCCCCCCCCCCcccccceeecccCC--chhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeec
Q 046314 591 EKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSK--IVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINL 668 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~--i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L 668 (1137)
...|...+.+|.+..++....+++|+.|-+..|. +..+... . |..++.|+.|||
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~-f-----------------------f~~m~~LrVLDL 578 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGE-F-----------------------FRSLPLLRVLDL 578 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHH-H-----------------------HhhCcceEEEEC
Confidence 3678888888888777777655566666666654 2222111 1 333444444444
Q ss_pred cCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccc
Q 046314 669 WNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSV 748 (1137)
Q Consensus 669 ~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i 748 (1137)
++|..+..+|.+++.|-+|++|+|++ +.+..+|.++
T Consensus 579 s~~~~l~~LP~~I~~Li~LryL~L~~--------------------------------------------t~I~~LP~~l 614 (889)
T KOG4658|consen 579 SGNSSLSKLPSSIGELVHLRYLDLSD--------------------------------------------TGISHLPSGL 614 (889)
T ss_pred CCCCccCcCChHHhhhhhhhcccccC--------------------------------------------CCccccchHH
Confidence 44555555555555555555555544 4444555555
Q ss_pred cCCCCCcEEecccccccccccccccCCCCCcEecccccc--cccccccccCCCCCcceecccCccccccCchhhcccccc
Q 046314 749 ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECL--NLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLH 826 (1137)
Q Consensus 749 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~--~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~ 826 (1137)
++|..|.+|++..+..+..+|.....|++|++|.+..-. ........+.++++|+.+....... .+-..+..+..|.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR 693 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH
Confidence 556666666666555555555555556666666553321 1122223344445555444433222 1000011111110
Q ss_pred ccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC--C-----CCC-cccccceeccccccccccCC-
Q 046314 827 ASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP--S-----IPE-LPPSLKWLQASNCKRLQFLP- 897 (1137)
Q Consensus 827 ~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~-----~~~-l~~~L~~L~l~~c~~L~~lp- 897 (1137)
...+.+.+.+|.....+..+..+.+|+.|.+.++.+.... + ... ++ +|..+.+.+|..+..+-
T Consensus 694 -------~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~-~l~~~~~~~~~~~r~l~~ 765 (889)
T KOG4658|consen 694 -------SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP-NLSKVSILNCHMLRDLTW 765 (889)
T ss_pred -------HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH-HHHHHHhhccccccccch
Confidence 0111222222333444555566666666666666554322 0 111 23 66667777777766655
Q ss_pred -CCCCCcceeeccccccccccc
Q 046314 898 -EIPSRPEELDASLLQKLSKYS 918 (1137)
Q Consensus 898 -~lp~~L~~L~~~~c~~L~~~~ 918 (1137)
..|++|+.|.+..|..++.+.
T Consensus 766 ~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 766 LLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred hhccCcccEEEEecccccccCC
Confidence 357888888888888777653
No 36
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.04 E-value=4.8e-10 Score=121.47 Aligned_cols=197 Identities=20% Similarity=0.226 Sum_probs=100.9
Q ss_pred ccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHH------HH
Q 046314 187 LVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHL------HK 260 (1137)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l------~~ 260 (1137)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-..++|+..... .. ....... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~-~~-~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEE-SN-ESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTB-SH-HHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccc-hh-hhHHHHHHHHHHHHH
Confidence 799999999999998643 35788999999999999999999988544334445432221 00 0000111 11
Q ss_pred HHHHHHh----Cccc-------cCCCCCccHHHHHhhc--CCceEEEEeCCCCHH-------H-HHH---HhcccCCCCC
Q 046314 261 QVVSLLL----GERI-------EMGGPNIPAYTLERLR--RTKVFFVLDDVSKFE-------Q-LKY---FVGWLHGFCP 316 (1137)
Q Consensus 261 ~ll~~l~----~~~~-------~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-------~-l~~---l~~~~~~~~~ 316 (1137)
.+...+. .... ..........+.+.+. +++++||+||++... . +.. +..... ...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccC
Confidence 1111111 1000 0011122233333333 345999999986544 1 222 333222 123
Q ss_pred CCEEEEEeCChhhHHhh------CCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 046314 317 GSRIVVTTRDKQVLRKH------GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEV 389 (1137)
Q Consensus 317 gsrIIiTTR~~~v~~~~------~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~ 389 (1137)
.-.+|+++....+.... .......+.+++|+.+++.+++...+-.. ..-+.-.+..++++..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44455555555544330 11222369999999999999998865332 11011245568999999999998864
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=2.3e-11 Score=136.11 Aligned_cols=190 Identities=20% Similarity=0.312 Sum_probs=116.2
Q ss_pred EEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccC
Q 046314 642 SINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNL 721 (1137)
Q Consensus 642 ~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l 721 (1137)
..||+.|++.....++..+..|+.|.|..| ....+|..+++|..|.+|+|+.|. +..+|..+...-
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp------------ 144 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP------------ 144 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc------------
Confidence 445555544332223444455555555554 345567777788888888777642 444444333322
Q ss_pred CCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCC
Q 046314 722 TEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKS 801 (1137)
Q Consensus 722 ~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 801 (1137)
|+.|-+++|+++.+|..++.+..|..|+.+.|.+ ..+|..++++.+|+.|+
T Consensus 145 ---------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~------------------- 195 (722)
T KOG0532|consen 145 ---------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLN------------------- 195 (722)
T ss_pred ---------ceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHH-------------------
Confidence 3444455577777777777667777777776653 23444444455555444
Q ss_pred cceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC---CCCCc
Q 046314 802 FQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP---SIPEL 878 (1137)
Q Consensus 802 L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp---~~~~l 878 (1137)
+..|.+..+|..+.. -.|..||++.|+++.+|-.|.+|..|++|-|.+|.+.+-| ...+.
T Consensus 196 -----vrRn~l~~lp~El~~------------LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGk 258 (722)
T KOG0532|consen 196 -----VRRNHLEDLPEELCS------------LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGK 258 (722)
T ss_pred -----HhhhhhhhCCHHHhC------------CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccc
Confidence 444455555554322 2377888888888888888888999999999999988877 33333
Q ss_pred ccccceecccccc
Q 046314 879 PPSLKWLQASNCK 891 (1137)
Q Consensus 879 ~~~L~~L~l~~c~ 891 (1137)
-.-.++|++.-|.
T Consensus 259 VHIFKyL~~qA~q 271 (722)
T KOG0532|consen 259 VHIFKYLSTQACQ 271 (722)
T ss_pred eeeeeeecchhcc
Confidence 3255788888773
No 38
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.99 E-value=2.4e-08 Score=118.38 Aligned_cols=296 Identities=17% Similarity=0.197 Sum_probs=191.4
Q ss_pred cCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHH
Q 046314 179 ISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
.+|..+.+.|-|..-++.+... .+.|.+.|..++|.|||||+.++.. ....-..+.|+.-. ....+..+.
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld----e~dndp~rF 82 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD----ESDNDPARF 82 (894)
T ss_pred CCCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC----CccCCHHHH
Confidence 4566778889998777766653 3689999999999999999999988 44455567888622 224556677
Q ss_pred HHHHHHHHhCcccc--------------CCCCCccHHHHHhhc--CCceEEEEeCCCCH------HHHHHHhcccCCCCC
Q 046314 259 HKQVVSLLLGERIE--------------MGGPNIPAYTLERLR--RTKVFFVLDDVSKF------EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~--------------~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~------~~l~~l~~~~~~~~~ 316 (1137)
...++..+..-... .+...+++.+..-+. .++..+||||..-. ..++.|+... .+
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PE 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CC
Confidence 77777766521111 011122333333332 56899999997442 2356666543 47
Q ss_pred CCEEEEEeCChhhHHhh--CCCCccEEEE----ccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 317 GSRIVVTTRDKQVLRKH--GVNDEYVYEV----ERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 317 gsrIIiTTR~~~v~~~~--~~~~~~~~~v----~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
+-.+|||||.+.-+... .+.. ...+| -.|+.+|+-++|...... +-+ ..-++.+.++..|-+-|+..+
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~-~llEi~~~~Lrf~~eE~~~fl~~~~~l---~Ld--~~~~~~L~~~teGW~~al~L~ 233 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRD-ELLEIGSEELRFDTEEAAAFLNDRGSL---PLD--AADLKALYDRTEGWAAALQLI 233 (894)
T ss_pred CeEEEEEeccCCCCcccceeehh-hHHhcChHhhcCChHHHHHHHHHcCCC---CCC--hHHHHHHHhhcccHHHHHHHH
Confidence 88999999987532211 1110 12233 357999999999887521 111 445678899999999999999
Q ss_pred hhhhccC-CHHHHHHHHHHHhccCCcccHHH-HHHHhhccCChhhHhHhhhcccccCCcCHHHHHHHHhhcCCchhHHHH
Q 046314 391 GSSLHQK-SKLDWENVLDNLKQISGVSRIYN-VLRISYEELSFEEKSTFLDIACFFKGECKDRVLMLLHDRQYNVTHVLS 468 (1137)
Q Consensus 391 g~~L~~~-~~~~w~~~l~~l~~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~~l~ 468 (1137)
+=.+++. +.+.--. .+... . .-|.+ ...--+|.||++.|..++-+|++.. +.-+-..++.. ..+....++
T Consensus 234 aLa~~~~~~~~q~~~---~LsG~-~-~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg--~~ng~amLe 305 (894)
T COG2909 234 ALALRNNTSAEQSLR---GLSGA-A-SHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTG--EENGQAMLE 305 (894)
T ss_pred HHHccCCCcHHHHhh---hccch-H-HHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhc--CCcHHHHHH
Confidence 8888733 3322211 11111 1 12222 2344578999999999999999843 23233333332 235667899
Q ss_pred HHHhccCceee----CCeEEehHHHHHHHHHhhhccC
Q 046314 469 ILIDKSLITEH----NNRLHMHELLQEMGQEIVRQED 501 (1137)
Q Consensus 469 ~L~~~sLi~~~----~~~~~mHdll~~~~~~i~~~e~ 501 (1137)
.|.+++|.-.. ++.|..|.++.++.+.....+.
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 99999997543 6789999999999999887654
No 39
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=1.3e-08 Score=112.86 Aligned_cols=180 Identities=16% Similarity=0.109 Sum_probs=105.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh--
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER-- 285 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-- 285 (1137)
.+++.|+|++|+||||+++.+++.+...--..+++. ....+..++...++..+...............+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~------~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV------NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee------CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999988753211122222 123345566667766654322111111112222222
Q ss_pred ---hcCCceEEEEeCCCCHH--HHHHHhcccC---CCCCCCEEEEEeCChhhHHhhC--------CCCccEEEEccCCHH
Q 046314 286 ---LRRTKVFFVLDDVSKFE--QLKYFVGWLH---GFCPGSRIVVTTRDKQVLRKHG--------VNDEYVYEVERLNED 349 (1137)
Q Consensus 286 ---L~~kr~LlVLDdv~~~~--~l~~l~~~~~---~~~~gsrIIiTTR~~~v~~~~~--------~~~~~~~~v~~L~~~ 349 (1137)
..+++.++|+||++... .++.+..... .......|++|.... ...... ......+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 25788999999998743 3554432111 112223455655432 211111 001226889999999
Q ss_pred HHHHHHHhhcccCCC--CChhHHHHHHHHHHHhCCCchhHHHHhhhh
Q 046314 350 EGLELFYKYAFRQSH--CPEHLTALSKKAVRYAEGNPLALEVLGSSL 394 (1137)
Q Consensus 350 ea~~Lf~~~a~~~~~--~~~~~~~l~~~iv~~~~G~PLal~~lg~~L 394 (1137)
|..+++...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998876532211 111225778899999999999999988876
No 40
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=6.2e-09 Score=106.09 Aligned_cols=146 Identities=21% Similarity=0.325 Sum_probs=85.0
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCC-----ceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFE-----GNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTL 283 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~ 283 (1137)
|++.|.|.+|+||||+++.++.++..... ...++...+. .........+...+............. . ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~--~--~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRD-ISDSNNSRSLADLLFDQLPESIAPIEE--L--LQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehh-hhhccccchHHHHHHHhhccchhhhHH--H--HHH
Confidence 57899999999999999999998755542 2233333333 222221123333333332221111110 1 111
Q ss_pred HhhcCCceEEEEeCCCCHHH---------HHHHhc-ccCC-CCCCCEEEEEeCChhhHHhh-CCCCccEEEEccCCHHHH
Q 046314 284 ERLRRTKVFFVLDDVSKFEQ---------LKYFVG-WLHG-FCPGSRIVVTTRDKQVLRKH-GVNDEYVYEVERLNEDEG 351 (1137)
Q Consensus 284 ~~L~~kr~LlVLDdv~~~~~---------l~~l~~-~~~~-~~~gsrIIiTTR~~~v~~~~-~~~~~~~~~v~~L~~~ea 351 (1137)
-....++++||||++++... +..++. .+.. ..++.++|||+|........ .......+++++|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 22357899999999965332 222222 1221 24789999999987762211 122223799999999999
Q ss_pred HHHHHhhc
Q 046314 352 LELFYKYA 359 (1137)
Q Consensus 352 ~~Lf~~~a 359 (1137)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997764
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=3.4e-10 Score=116.93 Aligned_cols=129 Identities=25% Similarity=0.287 Sum_probs=97.0
Q ss_pred CCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccC
Q 046314 730 NITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG 809 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 809 (1137)
.|++|+|++|.|+.+..+..-+|.++.|++++|.+...- .+..|++|+.|+|++|... .+...-.++.+.+.|.+++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 578899999999999888888999999999999876543 3777888899999887543 3334445677788888888
Q ss_pred ccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc--cccCCCCCCCEEEccCCCCCcCC
Q 046314 810 STISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 810 n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
|.|..+.. +..+.+|..||+++|+|..+. ..++++|.|+.|.|.+|.+..+|
T Consensus 362 N~iE~LSG------------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 362 NKIETLSG------------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhHhhhhh------------hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 87776653 455677778888888777643 46777777777777777776655
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=1.1e-08 Score=120.14 Aligned_cols=196 Identities=24% Similarity=0.366 Sum_probs=111.3
Q ss_pred eeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCC-cccEeeccCCCCccccCccccCCCcCceEeccCC
Q 046314 617 ELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETP-SLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGC 695 (1137)
Q Consensus 617 ~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~-~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c 695 (1137)
.|++..+.+........... .++.|++.+|.+....+....+. +|+.|++++|. ...+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~--~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELT--NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhccc--ceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 45555555533323332223 67777777776544444444453 77777777663 3344445666666666666654
Q ss_pred cCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCC
Q 046314 696 KNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKL 775 (1137)
Q Consensus 696 ~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l 775 (1137)
+ +..+|.... ...+++.|++++|.+..+|..+..+..|++|.+++|.
T Consensus 174 ~-l~~l~~~~~--------------------~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~------------ 220 (394)
T COG4886 174 D-LSDLPKLLS--------------------NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS------------ 220 (394)
T ss_pred h-hhhhhhhhh--------------------hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc------------
Confidence 3 222222110 1224455555556666666555444445555555543
Q ss_pred CCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCC
Q 046314 776 KSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGC 855 (1137)
Q Consensus 776 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 855 (1137)
....+..+.++.++..+.+.+|.+..++.. +..+++|+.|++++|.+++++. +..
T Consensus 221 -------------~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-----------~~~l~~l~~L~~s~n~i~~i~~-~~~ 275 (394)
T COG4886 221 -------------IIELLSSLSNLKNLSGLELSNNKLEDLPES-----------IGNLSNLETLDLSNNQISSISS-LGS 275 (394)
T ss_pred -------------ceecchhhhhcccccccccCCceeeeccch-----------hccccccceecccccccccccc-ccc
Confidence 122334455555555666666665554432 3456678888888888888777 788
Q ss_pred CCCCCEEEccCCCCCcCC
Q 046314 856 LPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 856 l~~L~~L~Ls~n~l~~lp 873 (1137)
+.+|+.|++++|.+...+
T Consensus 276 ~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 276 LTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cCccCEEeccCccccccc
Confidence 888888888888877665
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.73 E-value=1.3e-07 Score=101.34 Aligned_cols=150 Identities=16% Similarity=0.265 Sum_probs=91.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLR 287 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 287 (1137)
.+.+.|||++|+|||+||+++++.+..+...+.|+. .... ......+ .+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~-----~~~~---~~~~~~~--------------------~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP-----LSKS---QYFSPAV--------------------LENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee-----HHHh---hhhhHHH--------------------Hhhcc
Confidence 457899999999999999999998866666667765 2110 0000011 11222
Q ss_pred CCceEEEEeCCCCH---HHHH-HHhcccCCC-CCCCEEEEEeCCh----------hhHHhhCCCCccEEEEccCCHHHHH
Q 046314 288 RTKVFFVLDDVSKF---EQLK-YFVGWLHGF-CPGSRIVVTTRDK----------QVLRKHGVNDEYVYEVERLNEDEGL 352 (1137)
Q Consensus 288 ~kr~LlVLDdv~~~---~~l~-~l~~~~~~~-~~gsrIIiTTR~~----------~v~~~~~~~~~~~~~v~~L~~~ea~ 352 (1137)
+.-+|||||++.. .+|+ .+...+... ..|.++||+|.+. .+...++... .+++++++.++.+
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~--~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGE--IYQLNDLTDEQKI 167 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCC--eeeCCCCCHHHHH
Confidence 2348999999763 3333 222222211 2456665554433 4444444444 8999999999999
Q ss_pred HHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 353 ELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 353 ~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
+++.+.++......+ ++...-+++++.|..-++..+
T Consensus 168 ~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 168 IVLQRNAYQRGIELS--DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHH
Confidence 999998875433222 556667777777776555444
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=3.7e-09 Score=106.37 Aligned_cols=59 Identities=32% Similarity=0.491 Sum_probs=16.6
Q ss_pred CCCCCCEEeecCCCCCCccccc-CCCCCCCEEEccCCCCCcCC---CCCCcccccceecccccc
Q 046314 832 GLSSLNWLNLNNCALTAIPEEI-GCLPSLEWLELRGNNFESLP---SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 832 ~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~Ls~n~l~~lp---~~~~l~~~L~~L~l~~c~ 891 (1137)
.++.|+.|++++|.++++++.+ ..+++|++|+|++|+|..+. .+..++ +|+.|++.++|
T Consensus 62 ~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~-~L~~L~L~~NP 124 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP-KLRVLSLEGNP 124 (175)
T ss_dssp --TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T-T--EEE-TT-G
T ss_pred ChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC-CcceeeccCCc
Confidence 3444555555555555444333 23455555555555554443 223333 45555555544
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=3.1e-09 Score=109.99 Aligned_cols=56 Identities=29% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCCCCCCcccccceecccc
Q 046314 833 LSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASN 889 (1137)
Q Consensus 833 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~ 889 (1137)
+++|+.||||+|.++++..+-..+-+.++|.|++|.++++..+..+. +|..|++++
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLY-SLvnLDl~~ 383 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLY-SLVNLDLSS 383 (490)
T ss_pred cccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhh-hheeccccc
Confidence 44444555555544444444444444444555555444444444444 444444444
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.4e-07 Score=103.15 Aligned_cols=174 Identities=18% Similarity=0.263 Sum_probs=106.6
Q ss_pred CCCCCCccchhhHHH---HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHH
Q 046314 181 SDSSKGLVGLNSRIE---CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
|..-+++||.+.-+. -|.+++. .+.+.-.-+||++|+||||||+.++......|...- ....++++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s---------Av~~gvkd 88 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS---------AVTSGVKD 88 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec---------cccccHHH
Confidence 344466677665552 2444443 345677789999999999999999998877765321 11234444
Q ss_pred HHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEE--EeCChhhHHhh
Q 046314 258 LHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVV--TTRDKQVLRKH 333 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIi--TTR~~~v~~~~ 333 (1137)
+.+-+ .+. -+.+..+++.+|++|.|+. ..|-+.|++... .|.-|+| ||.++...-..
T Consensus 89 lr~i~-e~a---------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 89 LREII-EEA---------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNP 149 (436)
T ss_pred HHHHH-HHH---------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecH
Confidence 44332 111 1344568999999999965 456666666443 5666665 77776521110
Q ss_pred -CCCCccEEEEccCCHHHHHHHHHhhcccCCCCCh-----hHHHHHHHHHHHhCCCc
Q 046314 334 -GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPE-----HLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 334 -~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~-----~~~~l~~~iv~~~~G~P 384 (1137)
-.....++++++|+.+|-.+++.+-+-.....-. -.++...-+++.+.|--
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 1122348999999999999999883322111110 11345566778888764
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.8e-09 Score=117.83 Aligned_cols=199 Identities=19% Similarity=0.207 Sum_probs=103.1
Q ss_pred ccceeEEecCCCCCCCccC--CCCCCCcccEeeccCCCCcccc--CccccCCCcCceEeccCCcCcccCCCCCCCCCCce
Q 046314 637 AFKLKSINLSHSQYLIRIP--DPSETPSLERINLWNCTNLAWV--PSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVN 712 (1137)
Q Consensus 637 l~~L~~L~Ls~n~~~~~~p--~~~~l~~L~~L~L~~~~~l~~~--p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~ 712 (1137)
+.+|+.+.|.++....... ....+++++.|||+.|-..... -.-...|++|+.|+|+.|....-..+ ..+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------~~~ 193 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------NTT 193 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc------cch
Confidence 3388888888876432221 3467888888888887443332 23346778888888877643211110 111
Q ss_pred EeccCCccCCCCCcccCCCcEEEecCCCcc--ccCccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccc
Q 046314 713 IDCSFCVNLTEFPRISGNITKLNLCDTAIE--EVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLE 790 (1137)
Q Consensus 713 L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~ 790 (1137)
..+..++.|.|++|++. ++-.-+.. +++|+.|+|.+|....
T Consensus 194 -------------~~l~~lK~L~l~~CGls~k~V~~~~~~------------------------fPsl~~L~L~~N~~~~ 236 (505)
T KOG3207|consen 194 -------------LLLSHLKQLVLNSCGLSWKDVQWILLT------------------------FPSLEVLYLEANEIIL 236 (505)
T ss_pred -------------hhhhhhheEEeccCCCCHHHHHHHHHh------------------------CCcHHHhhhhcccccc
Confidence 12224455555555544 11111233 4444555554443222
Q ss_pred ccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC--cccc-----cCCCCCCCEEE
Q 046314 791 KSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA--IPEE-----IGCLPSLEWLE 863 (1137)
Q Consensus 791 ~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~--lp~~-----l~~l~~L~~L~ 863 (1137)
........+..|+.|+|++|++..++..- ..+.++.|+.|+++.|.+.+ +|+. ...+++|++|+
T Consensus 237 ~~~~~~~i~~~L~~LdLs~N~li~~~~~~---------~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 237 IKATSTKILQTLQELDLSNNNLIDFDQGY---------KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred eecchhhhhhHHhhccccCCccccccccc---------ccccccchhhhhccccCcchhcCCCccchhhhcccccceeee
Confidence 22222333445555555555555444211 13345666666666666665 3443 35567777777
Q ss_pred ccCCCCCcCCCC---CCcccccceeccc
Q 046314 864 LRGNNFESLPSI---PELPPSLKWLQAS 888 (1137)
Q Consensus 864 Ls~n~l~~lp~~---~~l~~~L~~L~l~ 888 (1137)
++.|++...+++ ..++ +|+.|.+.
T Consensus 308 i~~N~I~~w~sl~~l~~l~-nlk~l~~~ 334 (505)
T KOG3207|consen 308 ISENNIRDWRSLNHLRTLE-NLKHLRIT 334 (505)
T ss_pred cccCccccccccchhhccc-hhhhhhcc
Confidence 777777666633 3333 55555544
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.6e-09 Score=118.24 Aligned_cols=177 Identities=18% Similarity=0.112 Sum_probs=101.4
Q ss_pred CCceEEEEecCCCCCCCCC---C-cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCcc-CC-CCCCCccc
Q 046314 591 EKLKYLHLHKYPLRTLPEN---F-KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRI-PD-PSETPSLE 664 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~---~-~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~-p~-~~~l~~L~ 664 (1137)
++++.|++++|-+...-+- . .+++|+.|+|+.|++...+.......+++|+.|.|+.|.+...- .. +..+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 3778888887765533222 1 67778888888888777666655556667888888887764211 11 35677888
Q ss_pred EeeccCCCCccccCccccCCCcCceEeccCCcCccc--CCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCcc
Q 046314 665 RINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRS--FPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIE 742 (1137)
Q Consensus 665 ~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~--lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~ 742 (1137)
.|+|++|.....-..+...+..|+.|+|++|+.+.. ++....++.|. .|+++.|++.
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~---------------------~Lnls~tgi~ 284 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN---------------------QLNLSSTGIA 284 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh---------------------hhhccccCcc
Confidence 888887754433344455667777788877654332 12222244444 4444445544
Q ss_pred cc--Ccc-----ccCCCCCcEEeccccccccc-ccccccCCCCCcEeccccccc
Q 046314 743 EV--PSS-----VECLTNLEYLYINRCKRLKR-VSTSICKLKSLIWLCLNECLN 788 (1137)
Q Consensus 743 ~l--p~~-----i~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~L~~~~~ 788 (1137)
++ |+. ...+++|++|+++.|++... .-..+..+++|+.|.+.+|..
T Consensus 285 si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 285 SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 33 222 23456677777766665221 112244455666666555543
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=1.2e-09 Score=122.77 Aligned_cols=181 Identities=18% Similarity=0.274 Sum_probs=110.1
Q ss_pred cccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEec
Q 046314 613 KNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCF 692 (1137)
Q Consensus 613 ~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L 692 (1137)
.--+..+|+.|++..++.....+. .|+.+.|.+|.+-...+.+..+..|.+|+|+.|+ +..+|..++.|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~--~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFV--SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccccCchHHHHHH--HHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEE
Confidence 333455555555555555544444 5555555555544333345555556666665553 344555555554 566666
Q ss_pred cCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccc
Q 046314 693 QGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSI 772 (1137)
Q Consensus 693 ~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l 772 (1137)
++ ++++.+|..++ ....|..|+.+.|.+..+|+.++.+.+|+.|++..|... .+|..+
T Consensus 151 sN-Nkl~~lp~~ig--------------------~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El 208 (722)
T KOG0532|consen 151 SN-NKLTSLPEEIG--------------------LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEEL 208 (722)
T ss_pred ec-CccccCCcccc--------------------cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHH
Confidence 54 34555555443 011334445555777777777888888888888877643 455555
Q ss_pred cCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhc
Q 046314 773 CKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSH 821 (1137)
Q Consensus 773 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~ 821 (1137)
+.| .|..|++++|. +..+|-.|.+|+.|++|-|.+|.++.-|..++.
T Consensus 209 ~~L-pLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 209 CSL-PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred hCC-ceeeeecccCc-eeecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 543 47778887764 556788888888888888888888888876653
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.66 E-value=6.9e-07 Score=104.74 Aligned_cols=179 Identities=19% Similarity=0.291 Sum_probs=107.3
Q ss_pred CCCCCCccchhhHHHH---HHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHH
Q 046314 181 SDSSKGLVGLNSRIEC---IKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
|...+++||.+..+.. +..++.. +....+.++|++|+||||+|+.+++.....|.. +. .. ..+...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~-----a~-~~~~~~ 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS-----AV-TSGVKD 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-----cc-cccHHH
Confidence 4456779999988766 7777743 345678899999999999999999977654421 11 00 112222
Q ss_pred HHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEE--EeCChh--hHH
Q 046314 258 LHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVV--TTRDKQ--VLR 331 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIi--TTR~~~--v~~ 331 (1137)
+ ++++.... .....+++.+|++|+++.. .+.+.|+..+. .|..++| ||.+.. +..
T Consensus 77 i-r~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 77 L-REVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred H-HHHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 1 12222111 1112457789999999764 45556655443 3455544 344432 111
Q ss_pred hhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCCchhHHHH
Q 046314 332 KHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 332 ~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
.. ......+++++++.++..+++.+.+....... .-..+..+.++++++|.+..+.-+
T Consensus 138 aL-~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 138 AL-LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HH-hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 11 11123899999999999999988653211100 112456678899999998765443
No 51
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.63 E-value=4.8e-07 Score=108.16 Aligned_cols=246 Identities=14% Similarity=0.082 Sum_probs=131.6
Q ss_pred CCCCCCCccchhhHHHHHHHhhcc---CCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-----CC--ceEEEeeccchh
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCV---GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-----FE--GNCFIENVREEI 249 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~~ 249 (1137)
+...++.+.|||.++++|...|.. +.....++-|+|++|.|||+.++.|.+++... .+ .++++. +
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-----C 824 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-----G 824 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-----C
Confidence 445678999999999999998863 22334577899999999999999999876432 22 123443 2
Q ss_pred ccCcChHHHHHHHHHHHhCccccCCCC---CccHHHHHhhc---CCceEEEEeCCCCHH--HHHHHhcccCCC-CCCCEE
Q 046314 250 ENGVGLVHLHKQVVSLLLGERIEMGGP---NIPAYTLERLR---RTKVFFVLDDVSKFE--QLKYFVGWLHGF-CPGSRI 320 (1137)
Q Consensus 250 s~~~~~~~l~~~ll~~l~~~~~~~~~~---~~~~~l~~~L~---~kr~LlVLDdv~~~~--~l~~l~~~~~~~-~~gsrI 320 (1137)
........+...+..++..... ..+. ...+.+...+. +...+||||+|+... +-+.|...+.|. ..+++|
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKL 903 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKL 903 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeE
Confidence 2234455666667766644332 1122 22223333331 224589999997532 112222222222 245665
Q ss_pred EE--EeCChh--------hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccC-CCCCh-hHHHHHHHHHHHhCCCchhHH
Q 046314 321 VV--TTRDKQ--------VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQ-SHCPE-HLTALSKKAVRYAEGNPLALE 388 (1137)
Q Consensus 321 Ii--TTR~~~--------v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~-~~~~~-~~~~l~~~iv~~~~G~PLal~ 388 (1137)
+| +|.+.. +...++.. .+..++.+.++-.+++..++-.. ....+ ..+-+|+.++...|..=.||.
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg~e---eIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALD 980 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLAFG---RLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQ 980 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhccccc---cccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHH
Confidence 44 332211 11222221 36679999999999999887532 11222 233333333333344445665
Q ss_pred HHhhhhccC-----CHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhccc
Q 046314 389 VLGSSLHQK-----SKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIAC 442 (1137)
Q Consensus 389 ~lg~~L~~~-----~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~ 442 (1137)
++-.+...+ ..+.-+.+..++.. .. +.-....||.++|-+++.++.
T Consensus 981 ILRrAgEikegskVT~eHVrkAleeiE~----sr----I~e~IktLPlHqKLVLlALIl 1031 (1164)
T PTZ00112 981 ICRKAFENKRGQKIVPRDITEATNQLFD----SP----LTNAINYLPWPFKMFLTCLIV 1031 (1164)
T ss_pred HHHHHHhhcCCCccCHHHHHHHHHHHHh----hh----HHHHHHcCCHHHHHHHHHHHH
Confidence 554444211 22233333332221 11 223336788888776664443
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=3.9e-08 Score=115.59 Aligned_cols=177 Identities=23% Similarity=0.222 Sum_probs=115.4
Q ss_pred CCceEEEEecCCCCCCCCCCccc--ccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeec
Q 046314 591 EKLKYLHLHKYPLRTLPENFKPK--NLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINL 668 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~~~l~--~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L 668 (1137)
+.++.|++.++++..+|...... +|++|++++|.+..++.....++ +|+.|++++|++....+..+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~--~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLP--NLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccc--cccccccCCchhhhhhhhhhhhhhhhheec
Confidence 36888888888888888877543 88888888888888765555555 888888888875444443447888888888
Q ss_pred cCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccc
Q 046314 669 WNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSV 748 (1137)
Q Consensus 669 ~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i 748 (1137)
++| ....+|..+..+..|+.|.+++|..+..+.....+. ++..|.+.+|++..++..+
T Consensus 194 s~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~---------------------~l~~l~l~~n~~~~~~~~~ 251 (394)
T COG4886 194 SGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK---------------------NLSGLELSNNKLEDLPESI 251 (394)
T ss_pred cCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcc---------------------cccccccCCceeeeccchh
Confidence 887 455666666666678888887765333222212233 3333444555555556666
Q ss_pred cCCCCCcEEecccccccccccccccCCCCCcEecccccccccccc
Q 046314 749 ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSW 793 (1137)
Q Consensus 749 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 793 (1137)
+.+++|++|++++|.+....+ ++.+.+|+.|+++++......+
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 666667777777665444332 6666677777776666554444
No 53
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=2.6e-08 Score=100.24 Aligned_cols=92 Identities=22% Similarity=0.272 Sum_probs=21.1
Q ss_pred cCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCc
Q 046314 600 KYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPS 679 (1137)
Q Consensus 600 ~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~ 679 (1137)
.+.++..|...++.++++|+|.+|.|+.+-.-...+. +|+.|+|++|.+ ..++.+..+++|++|++++|... .+..
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~--~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~I~-~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLD--KLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNRIS-SISE 81 (175)
T ss_dssp ------------------------------S--TT-T--T--EEE-TTS---S--TT----TT--EEE--SS----S-CH
T ss_pred ccccccccccccccccccccccccccccccchhhhhc--CCCEEECCCCCC-ccccCccChhhhhhcccCCCCCC-cccc
Confidence 3445555555566677777777777776632111233 788888888774 34566777777777777777543 3333
Q ss_pred cc-cCCCcCceEeccCC
Q 046314 680 SI-QNFNHLSLLCFQGC 695 (1137)
Q Consensus 680 ~i-~~L~~L~~L~L~~c 695 (1137)
.+ ..+++|+.|++++|
T Consensus 82 ~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNN 98 (175)
T ss_dssp HHHHH-TT--EEE-TTS
T ss_pred chHHhCCcCCEEECcCC
Confidence 33 34666666666654
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.59 E-value=1.5e-07 Score=105.72 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=32.6
Q ss_pred CCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccc
Q 046314 730 NITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSW 793 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 793 (1137)
+++.|++++|.++.+|. -.++|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|
T Consensus 53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 55666666666666662 22346666666666555555443 2456666666654444333
No 55
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.56 E-value=5.6e-08 Score=107.11 Aligned_cols=281 Identities=23% Similarity=0.260 Sum_probs=184.9
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL 286 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 286 (1137)
..|.|.++|.|||||||++-++.. ++..|....++.+.+. +++. ..+.-.+...+.-. ..++......+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~p-itD~---~~v~~~~ag~~gl~--~~~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAP-ITDP---ALVFPTLAGALGLH--VQPGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhhcccceeeeeccc-cCch---hHhHHHHHhhcccc--cccchHHHHHHHHHH
Confidence 468899999999999999999999 8999998887776555 3332 22222222212111 112233444557888
Q ss_pred cCCceEEEEeCCCCHH-HHHHHhcccCCCCCCCEEEEEeCChhhHHhhCCCCccEEEEccCCHH-HHHHHHHhhcccCCC
Q 046314 287 RRTKVFFVLDDVSKFE-QLKYFVGWLHGFCPGSRIVVTTRDKQVLRKHGVNDEYVYEVERLNED-EGLELFYKYAFRQSH 364 (1137)
Q Consensus 287 ~~kr~LlVLDdv~~~~-~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~-ea~~Lf~~~a~~~~~ 364 (1137)
.++|.++|+||-...- +-..+...+....+.-+|+.|+|.. ..+..+..+.+++|+.. ++.++|...+.....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~-----~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREA-----ILVAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhh-----hcccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 8999999999986543 3334444444455677889999974 33444458889999877 799999877632111
Q ss_pred ---CChhHHHHHHHHHHHhCCCchhHHHHhhhhccCCHHHHHHHHH----HHhccC-----CcccHHHHHHHhhccCChh
Q 046314 365 ---CPEHLTALSKKAVRYAEGNPLALEVLGSSLHQKSKLDWENVLD----NLKQIS-----GVSRIYNVLRISYEELSFE 432 (1137)
Q Consensus 365 ---~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~~~~~~~w~~~l~----~l~~~~-----~~~~i~~~l~~sy~~L~~~ 432 (1137)
....-.....+|.+...|.|+++...++..+.....+..+.+. .+.... ........+..||.-|...
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 0122255678899999999999999999888766555443332 122211 1144667799999999999
Q ss_pred hHhHhhhcccccCCcCHHHHHHHHhh-----cCCchhHHHHHHHhccCceee----CCeEEehHHHHHHHHHhhhc
Q 046314 433 EKSTFLDIACFFKGECKDRVLMLLHD-----RQYNVTHVLSILIDKSLITEH----NNRLHMHELLQEMGQEIVRQ 499 (1137)
Q Consensus 433 ~k~~fl~~a~f~~~~~~~~l~~~~~~-----~~~~~~~~l~~L~~~sLi~~~----~~~~~mHdll~~~~~~i~~~ 499 (1137)
++-.|-.++.|...+..+.....-.. ..+..-..+..+++++++... ..+++.-+-.+.|+.....+
T Consensus 241 e~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred HHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888877632222111 223345567789999998765 23355556666666665544
No 56
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=2.6e-06 Score=97.98 Aligned_cols=181 Identities=13% Similarity=0.167 Sum_probs=110.7
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC---------------------ce
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE---------------------GN 239 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~ 239 (1137)
|...++++|.+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+..... ..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 455678999999999999988643 23467789999999999999999987642111 01
Q ss_pred EEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcccCCCCCC
Q 046314 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE--QLKYFVGWLHGFCPG 317 (1137)
Q Consensus 240 ~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~g 317 (1137)
..+. .+....... .++++..+.. ....+++-++|+|+++... .++.++..+....+.
T Consensus 91 ~~~~-----~~~~~~v~~-ir~i~~~~~~---------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~ 149 (363)
T PRK14961 91 IEID-----AASRTKVEE-MREILDNIYY---------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH 149 (363)
T ss_pred EEec-----ccccCCHHH-HHHHHHHHhc---------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 1110 000011111 1111111100 0012345689999998754 466777766655566
Q ss_pred CEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 318 SRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 318 srIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
.++|++|.+.. +.... ......+++++++.++..+.+...+......-+ .+.+..+++.++|.|-.
T Consensus 150 ~~fIl~t~~~~~l~~tI-~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~--~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 150 IKFILATTDVEKIPKTI-LSRCLQFKLKIISEEKIFNFLKYILIKESIDTD--EYALKLIAYHAHGSMRD 216 (363)
T ss_pred eEEEEEcCChHhhhHHH-HhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 77777765543 32221 111238999999999999888876644322111 45567788999998853
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.9e-06 Score=103.58 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=114.3
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-C-Cc-eEEEeec------------
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-F-EG-NCFIENV------------ 245 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~-~~~~~~~------------ 245 (1137)
|...+++||.+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+... . .. .|..++.
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 4566789999999999999886431 24556899999999999999999976432 1 00 1111100
Q ss_pred cc-hhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEE
Q 046314 246 RE-EIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVV 322 (1137)
Q Consensus 246 ~~-~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIi 322 (1137)
-+ ......++..+ +++...+. .....+++-++|||+++.. +..+.|+..+.......++|+
T Consensus 91 iEidAas~~kVDdI-ReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 00 00001111211 22222211 1112456779999999764 557777777765556677766
Q ss_pred EeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch-hHHH
Q 046314 323 TTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL-ALEV 389 (1137)
Q Consensus 323 TTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL-al~~ 389 (1137)
+|.+.+ +..... .....|.+++|+.++..+.+...+-...... ..+....|++.++|.|- |+..
T Consensus 155 aTTe~~kLl~TIl-SRCq~f~fkpLs~eEI~~~L~~il~~EgI~~--edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVL-SRCLQFNLKSLTQDEIGTQLNHILTQEQLPF--EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHH-HhheEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 665543 332211 1224899999999999998887653322111 14566788999999885 4433
No 58
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.52 E-value=1.5e-06 Score=93.49 Aligned_cols=175 Identities=17% Similarity=0.253 Sum_probs=103.1
Q ss_pred CCCcc--chhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHH
Q 046314 184 SKGLV--GLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQ 261 (1137)
Q Consensus 184 ~~~~v--Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ 261 (1137)
.++|+ +.+..++++.+++. ....+.|.|+|.+|+|||+||+.++++........+++. ... .. .....
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~-~~------~~~~~ 83 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAE-LA------QADPE 83 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHH-HH------HhHHH
Confidence 34555 34556777777754 234578999999999999999999997765544455554 111 10 00001
Q ss_pred HHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH----HHHHHhcccCC-CCCCCEEEEEeCChh--------
Q 046314 262 VVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE----QLKYFVGWLHG-FCPGSRIVVTTRDKQ-------- 328 (1137)
Q Consensus 262 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~~-------- 328 (1137)
+ ...+.+ .-+|||||++... ..+.+...+.. ...+.++|+||+...
T Consensus 84 ~--------------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 84 V--------------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred H--------------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 1 111222 2389999996542 12333322211 123458899887532
Q ss_pred -hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhh
Q 046314 329 -VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSS 393 (1137)
Q Consensus 329 -v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~ 393 (1137)
+....... ..+++++++.++...++...+-+...+-+ .+..+.+++++.|+|..+..+...
T Consensus 143 ~L~~r~~~~--~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 143 DLRTRLAWG--LVFQLPPLSDEEKIAALQSRAARRGLQLP--DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHhcC--eeEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHHHHH
Confidence 12222112 27999999999999998876533222111 455677788899999877666433
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=4.4e-06 Score=99.17 Aligned_cols=195 Identities=16% Similarity=0.100 Sum_probs=113.0
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh--ccCCceEEEeeccchhccCcChHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS--NEFEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
.|...++++|.+.-.+.|..++..+. -...+.++|++|+||||+|+.+++.+. +.+...|+.+.....+.......
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~d- 86 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPD- 86 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCc-
Confidence 34566789999999999988886442 245679999999999999999999764 22333343321100000000000
Q ss_pred HHHHHHHHHhCccccCCCCCccHHHHHh-----hcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCCh-hh
Q 046314 258 LHKQVVSLLLGERIEMGGPNIPAYTLER-----LRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDK-QV 329 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v 329 (1137)
+..+... .....+.++.+.+. ..+++-++|+|+++.. +.++.|+..+....+...+|++|... .+
T Consensus 87 -----v~el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 87 -----VLEIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM 159 (504)
T ss_pred -----eEEeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhC
Confidence 0000000 00000011111111 1245668899999764 45777777666555566666665443 33
Q ss_pred HHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 330 LRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 330 ~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
..... .....+++.+++.++..+.+...+-+.....+ .+....|++.++|.+--
T Consensus 160 ~~~I~-SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~--~~Al~~ia~~s~GdlR~ 213 (504)
T PRK14963 160 PPTIL-SRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE--PEALQLVARLADGAMRD 213 (504)
T ss_pred ChHHh-cceEEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 22221 22338999999999999999887754432221 45667889999998843
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=4.6e-06 Score=99.86 Aligned_cols=186 Identities=15% Similarity=0.170 Sum_probs=113.6
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc---------------------CCc
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE---------------------FEG 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~ 238 (1137)
.|...+++||.+.-++.|..++..+. -.+.+.++|..|+||||+|+.+.+.+... |..
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 34566889999999999999986442 24566799999999999999999876321 111
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE--QLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~ 316 (1137)
.+.+. .+...++..+ ++++.... ..-..++.-++|||+++... .+..|+..+....+
T Consensus 90 viEID-----Aas~rgVDdI-ReLIe~a~---------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 90 YVEMD-----AASNRGVDEM-AALLERAV---------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPP 148 (830)
T ss_pred EEEec-----ccccccHHHH-HHHHHHHH---------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCC
Confidence 11111 0111111111 11111110 00012344578899998753 36777776665566
Q ss_pred CCEEEEEeCChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc-hhHHH
Q 046314 317 GSRIVVTTRDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP-LALEV 389 (1137)
Q Consensus 317 gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P-Lal~~ 389 (1137)
..++|+||.+.+-...--......+.++.++.++..+.+.+.+......- ..+..+.|++.++|.. -|+..
T Consensus 149 ~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 78888888776532111112234799999999999999887764332211 1455677888998865 34444
No 61
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.50 E-value=4.3e-06 Score=96.09 Aligned_cols=198 Identities=14% Similarity=0.115 Sum_probs=108.6
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC-Cc-eEEEeeccchhccCcChHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF-EG-NCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~~s~~~~~~~ 257 (1137)
.|...++++|++..++.+..++..+ ..+.+.++|++|+||||+|+++++.+...- .. .+++. ..+...... ..
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~--~~ 84 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQGK--KY 84 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcch--hh
Confidence 3445678999999999999988643 345688999999999999999999775332 22 22222 211000000 00
Q ss_pred HHH--HHHHHHhCccccCCCCCccHHHHHh---------hcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEe
Q 046314 258 LHK--QVVSLLLGERIEMGGPNIPAYTLER---------LRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTT 324 (1137)
Q Consensus 258 l~~--~ll~~l~~~~~~~~~~~~~~~l~~~---------L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT 324 (1137)
+.. .....+ ... ..........+++. ....+-+||+||++.. +..+.|...+....+..++|+||
T Consensus 85 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 85 LVEDPRFAHFL-GTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred hhcCcchhhhh-hhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEe
Confidence 000 000000 000 00000011111111 1133458999999754 22344444333344567888877
Q ss_pred CChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhH
Q 046314 325 RDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 325 R~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal 387 (1137)
.... +..... .....+++.+++.++..+++...+......- ..+....++++++|.+-.+
T Consensus 163 ~~~~~~~~~L~-sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~--~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 163 RQPSKLIPPIR-SRCLPLFFRAPTDDELVDVLESIAEAEGVDY--DDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred CChhhCchhhc-CCceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 5432 222211 1223789999999999998888764333221 1556778888998886544
No 62
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=8.7e-06 Score=92.79 Aligned_cols=201 Identities=12% Similarity=0.007 Sum_probs=113.8
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc-c-CCceEEEeeccchhccCcChHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN-E-FEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~-F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
.|...++++|.+...+.|.+.+..+ .-.....++|+.|+||+|+|..+++.+-- . ......-.... .....+--.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~--~l~~~~~c~ 90 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT--SLAIDPDHP 90 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc--cccCCCCCh
Confidence 4556688999999999999988644 23556889999999999999999987631 1 11000000000 000000000
Q ss_pred HHHHHHHHHhCcccc------CC-----CCCccHHHH---Hhh-----cCCceEEEEeCCCC--HHHHHHHhcccCCCCC
Q 046314 258 LHKQVVSLLLGERIE------MG-----GPNIPAYTL---ERL-----RRTKVFFVLDDVSK--FEQLKYFVGWLHGFCP 316 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~------~~-----~~~~~~~l~---~~L-----~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~ 316 (1137)
..+.+...-...-.. .. ..-.++.++ +.+ .+++-++|+|+++. ......|+..+....+
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 111111000000000 00 001122222 222 25567899999975 3446667666655455
Q ss_pred CCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 317 GSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 317 gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
+..+|++|.+.. +.... ......+.+.+++.++..+++...... .. .+....++..++|.|+....+
T Consensus 171 ~~~~IL~t~~~~~llpti-~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTI-RSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHh-hccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 677777777654 32221 223448999999999999999876421 11 122267899999999866554
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3e-06 Score=100.42 Aligned_cols=183 Identities=16% Similarity=0.139 Sum_probs=112.8
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc---------------------CCc
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE---------------------FEG 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~ 238 (1137)
.|...+++||.+...+.|..++..+. -...+.++|+.|+||||+|+.+++.+.-. +..
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 34566889999999999999986442 25678999999999999999999876321 111
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 316 (1137)
.+.+. .+...++..+ ++++.... ..-..+++-++|+|+|+.. .....|+..+....+
T Consensus 89 viEID-----AAs~~~VddI-Reli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 89 LIEID-----AASRTKVEDT-RELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPE 147 (702)
T ss_pred eEEec-----ccccCCHHHH-HHHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11111 1111122111 11111110 0111345668999999874 456667666655556
Q ss_pred CCEEEEEeCChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 317 GSRIVVTTRDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 317 gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
+.++|++|.+..-...--......+++++++.++..+.+...+-+....-+ .+....|++.++|.+-.
T Consensus 148 ~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id--~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD--QDAIWQIAESAQGSLRD 215 (702)
T ss_pred CcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 678888777654221111122348999999999999888876644322211 45567788999998743
No 64
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.46 E-value=1.9e-06 Score=88.50 Aligned_cols=179 Identities=19% Similarity=0.177 Sum_probs=98.1
Q ss_pred CCCCCCCccchhhHHHHHHHhhcc---CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCV---GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~ 256 (1137)
.|..-++|||.++-++.+.-++.. ..+....+.+||++|.||||||..+++.....|.. .. ...-....
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~s-----g~~i~k~~ 90 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TS-----GPAIEKAG 90 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EE-----CCC--SCH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---cc-----chhhhhHH
Confidence 456778999999999988766642 23457789999999999999999999998877642 11 00000111
Q ss_pred HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCC--------CCCCCE-------
Q 046314 257 HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHG--------FCPGSR------- 319 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~--------~~~gsr------- 319 (1137)
++.. + ...++ ++-+|.+|.++.. .+-+.|.+.... .+++.|
T Consensus 91 dl~~-i--------------------l~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 91 DLAA-I--------------------LTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp HHHH-H--------------------HHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred HHHH-H--------------------HHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1111 1 11122 3457788999764 333334332221 123332
Q ss_pred ----EEEEeCChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 320 ----IVVTTRDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 320 ----IIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
|=.|||..-+...+.-.-..+..++..+.+|-.++..+.+..-...- ..+.+.+|++++.|-|--..-+
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i--~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI--DEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE---HHHHHHHHHCTTTSHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc--CHHHHHHHHHhcCCChHHHHHH
Confidence 33578764443222111112468999999999999988875443322 2678899999999999544433
No 65
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=6.2e-06 Score=97.92 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=110.9
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc---------------------CCce
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE---------------------FEGN 239 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 239 (1137)
|...+++||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... |...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 456678999999999999988643 234567899999999999999999866421 1111
Q ss_pred EEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC--HHHHHHHhcccCCCCCC
Q 046314 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPG 317 (1137)
Q Consensus 240 ~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~g 317 (1137)
..+. .....+...+ ++++..+. ..-..+++-++|+|+++. ....+.|+..+....+.
T Consensus 91 ieid-----aas~~gvd~i-r~ii~~~~---------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEID-----AASRTGVEET-KEILDNIQ---------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEee-----cccccCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 1111 1111222211 12221110 011235667899999975 34577777776655556
Q ss_pred CEEEEEeCCh-hhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch-hHHHH
Q 046314 318 SRIVVTTRDK-QVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL-ALEVL 390 (1137)
Q Consensus 318 srIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL-al~~l 390 (1137)
..+|++|-+. .+.... ......+++++++.++..+.+...+-...... ..+....+++.++|.+- |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI-~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~--e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTI-LSRCIQLHLKHISQADIKDQLKIILAKENINS--DEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhH-HHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666555443 333221 12233899999999998888776543322111 14455678888888763 44443
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=9.8e-06 Score=95.89 Aligned_cols=183 Identities=12% Similarity=0.098 Sum_probs=110.9
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC-----------------------
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF----------------------- 236 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F----------------------- 236 (1137)
.|...+++||-+.-++.|..++..+. -...+.++|..|+||||+|+.+++.+...-
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 35566889999999999999986442 245678999999999999999998763210
Q ss_pred ---CceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhccc
Q 046314 237 ---EGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWL 311 (1137)
Q Consensus 237 ---~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~ 311 (1137)
...+.+. .....++.++. +++..+. ..-..++.-++|||+++.. ...+.|+..+
T Consensus 90 G~hpDviEId-----Aas~~gVDdIR-eLie~~~---------------~~P~~gr~KViIIDEah~Ls~~AaNALLKTL 148 (700)
T PRK12323 90 GRFVDYIEMD-----AASNRGVDEMA-QLLDKAV---------------YAPTAGRFKVYMIDEVHMLTNHAFNAMLKTL 148 (700)
T ss_pred CCCCcceEec-----ccccCCHHHHH-HHHHHHH---------------hchhcCCceEEEEEChHhcCHHHHHHHHHhh
Confidence 0111110 00011111111 1111100 0011345668999999874 4577787777
Q ss_pred CCCCCCCEEEEEeCCh-hhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhH
Q 046314 312 HGFCPGSRIVVTTRDK-QVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 312 ~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal 387 (1137)
.....+.++|++|.+. .+..... .....+.++.++.++..+.+.+.+-......+ .+..+.|++.++|.|.-.
T Consensus 149 EEPP~~v~FILaTtep~kLlpTIr-SRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d--~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 149 EEPPEHVKFILATTDPQKIPVTVL-SRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE--VNALRLLAQAAQGSMRDA 222 (700)
T ss_pred ccCCCCceEEEEeCChHhhhhHHH-HHHHhcccCCCChHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 6555666766555544 3332211 12237999999999999988876533222111 344577899999998543
No 67
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6e-06 Score=97.17 Aligned_cols=188 Identities=16% Similarity=0.148 Sum_probs=110.0
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc----CC-----------------c
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE----FE-----------------G 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~ 238 (1137)
.|...+++||.+.-.+.|...+..+. -...+.++|++|+||||+|+.+++.+... +. .
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 45566889999988888888775332 23567899999999999999999875321 10 1
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 316 (1137)
...+. .+...+...+. ++..... .....+++-++|+|+++.. ++.+.|+..+....+
T Consensus 88 v~el~-----aa~~~gid~iR-~i~~~~~---------------~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 88 VIELD-----AASNRGIDEIR-KIRDAVG---------------YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred cEEEe-----CcccCCHHHHH-HHHHHHh---------------hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 11111 11112222221 2211110 0012345678999999764 345666666554444
Q ss_pred CCEEEEEeCC-hhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCC-chhHHHHhh
Q 046314 317 GSRIVVTTRD-KQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGN-PLALEVLGS 392 (1137)
Q Consensus 317 gsrIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~-PLal~~lg~ 392 (1137)
...+|++|.+ ..+.... ......+++.+++.++....+...+......-+ .+....|+++++|. +.|+..+-.
T Consensus 147 ~vv~Ilattn~~kl~~~L-~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~--~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTI-ISRCQVIEFRNISDELIIKRLQEVAEAEGIEID--REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cEEEEEEeCChHhhhHHH-hcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4454444443 3333322 122348999999999998888877643322211 45566778877654 566666544
No 68
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=5e-06 Score=96.03 Aligned_cols=189 Identities=11% Similarity=0.080 Sum_probs=109.2
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC---ceEEEeeccchhccCcChH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE---GNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~s~~~~~~ 256 (1137)
.|...+++||.+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+...-. ..|..+. .
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~---------s-- 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT---------S-- 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc---------H--
Confidence 35566889999999999999886442 2356899999999999999999987643211 0111100 0
Q ss_pred HHHHHHHHHHhCccccC-----CCCCccHHHHHh-----hcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEe
Q 046314 257 HLHKQVVSLLLGERIEM-----GGPNIPAYTLER-----LRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTT 324 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~-----~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT 324 (1137)
...+.......-... .+.+.++.+.+. ..++.-++|+|+|+.. +..++|+..+........+|.+|
T Consensus 81 --C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 81 --CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred --HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 000000000000000 000111111111 2355678999999764 45777777665444455555444
Q ss_pred CC-hhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 325 RD-KQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 325 R~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
.+ ..+..... .....|.+.+++.++..+.+...+-.....-+ .+....|++.++|.+-
T Consensus 159 te~~kI~~TI~-SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e--~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 159 TEFHKIPETIL-SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD--QEGLFWIAKKGDGSVR 217 (484)
T ss_pred CChhhccHHHH-hhhheeeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCChHH
Confidence 43 33332221 22237999999999988888776543322111 4566889999999883
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=4.5e-08 Score=115.23 Aligned_cols=144 Identities=26% Similarity=0.309 Sum_probs=91.9
Q ss_pred CcEEEecCCCccccCccccCCCCCcEEeccccccccccc-ccccCCCCCcEecccccccccccccccCCCCCcceecccC
Q 046314 731 ITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVS-TSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG 809 (1137)
Q Consensus 731 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 809 (1137)
|+.|++.+|.|..++. +..++.|+.+++++|.+...-+ . ...+.+|+.+.+.+|.... ...+..+..+..+++..
T Consensus 142 L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 142 LKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLD 217 (414)
T ss_pred hhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccc
Confidence 4555555666665543 4457777777777776655433 2 4567777777777776543 22333444455556666
Q ss_pred ccccccCchhhccccccccccCCCCC--CCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCCCCCCcccccceecc
Q 046314 810 STISQLPHLLSHLVSLHASLLSGLSS--LNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQA 887 (1137)
Q Consensus 810 n~i~~lp~~l~~l~~L~~~~l~~l~~--L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l 887 (1137)
|.+..+-. +..+.. |+.+++++|.+..++..+..+..+..|++.+|++..+..+...+ .+..+..
T Consensus 218 n~i~~~~~------------l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~-~~~~~~~ 284 (414)
T KOG0531|consen 218 NKISKLEG------------LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLP-KLSELWL 284 (414)
T ss_pred ccceeccC------------cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccc-hHHHhcc
Confidence 66665432 122233 78889999988888778888889999999998888766555555 5555555
Q ss_pred cccc
Q 046314 888 SNCK 891 (1137)
Q Consensus 888 ~~c~ 891 (1137)
...+
T Consensus 285 ~~~~ 288 (414)
T KOG0531|consen 285 NDNK 288 (414)
T ss_pred Ccch
Confidence 5443
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=1.1e-06 Score=99.09 Aligned_cols=71 Identities=15% Similarity=0.340 Sum_probs=54.3
Q ss_pred CCCCceEeccCCccCCCCCcccCCCcEEEecC-CCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccc
Q 046314 707 FVSPVNIDCSFCVNLTEFPRISGNITKLNLCD-TAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNE 785 (1137)
Q Consensus 707 l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~-~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 785 (1137)
+..+..|++++| .++.+|..+.+|+.|.+++ +.+..+|..+ .++|++|++++|..+..+|.. |+.|++++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeCC
Confidence 466888999998 8899998888999999987 4566777655 368999999999766667653 56666654
Q ss_pred c
Q 046314 786 C 786 (1137)
Q Consensus 786 ~ 786 (1137)
+
T Consensus 122 n 122 (426)
T PRK15386 122 S 122 (426)
T ss_pred C
Confidence 3
No 71
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.39 E-value=1.2e-06 Score=95.78 Aligned_cols=90 Identities=27% Similarity=0.472 Sum_probs=76.1
Q ss_pred CCcccEEEcccccccCCchHHHHHHHHhcCCCcEEEcC-CCCCCCcchHHHHHHhhhcceeEEEeccccccc--------
Q 046314 7 SCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALMKAIEGSKISVIIFSKDYASS-------- 77 (1137)
Q Consensus 7 ~~~~dvFis~~~~d~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s-------- 77 (1137)
..+.|||||||.. +-...++-+.-.|.-+|++||+|- .+..|+. .+.+.+.|..++.+|.|+|||..+-
T Consensus 610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 5789999999865 446788888888999999999998 7888876 5589999999999999999997654
Q ss_pred hhhHHHHHHHHHhhhcCCCeEEEEE
Q 046314 78 KWCLNELVKILKCKNLKGQTVIPIY 102 (1137)
Q Consensus 78 ~~c~~el~~~~~~~~~~~~~v~pvf 102 (1137)
.|...|+.-+++|.+ .+||||
T Consensus 688 DWVHKEl~~Afe~~K----NIiPI~ 708 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQK----NIIPIF 708 (832)
T ss_pred HHHHHHHHHHHHhcC----Ceeeee
Confidence 677888888887764 799998
No 72
>PTZ00202 tuzin; Provisional
Probab=98.39 E-value=8e-06 Score=91.16 Aligned_cols=210 Identities=15% Similarity=0.138 Sum_probs=124.5
Q ss_pred HHHHHHHHH-------------hcccCCCCcccCchhhHH--HHHHHHHHHHhcccc-----ccCCCCCCCccchhhHHH
Q 046314 136 RKWRDAMIK-------------TSYLSGHESTKIRPEAKL--VQVIVNDILKKLECK-----SISSDSSKGLVGLNSRIE 195 (1137)
Q Consensus 136 ~~w~~aL~~-------------~~~~~g~~~~~~~~e~~~--i~~i~~~v~~~l~~~-----~~~~~~~~~~vGr~~~~~ 195 (1137)
+.||-++++ ++...||...+++.+... .+-.++...+.+ ++ +..|.+..+|+||+.++.
T Consensus 194 rd~RY~l~KYsG~vSa~~a~lgv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~-~~~~~~~~~lPa~~~~FVGReaEla 272 (550)
T PTZ00202 194 RDFRYVLTKYSGVVSASVALLGVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPL-NPRPSTLQSAPAVIRQFVSREAEES 272 (550)
T ss_pred hhhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccc-CCCcccccCCCCCccCCCCcHHHHH
Confidence 457776664 344556765555544332 333445555554 22 124667889999999999
Q ss_pred HHHHhhccCC-CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCC
Q 046314 196 CIKSLLCVGF-PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMG 274 (1137)
Q Consensus 196 ~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~ 274 (1137)
+|...|...+ +.++++.|.|++|+|||||++.+..... ...++.|. .+..++...++.++..+.. ..
T Consensus 273 ~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eElLr~LL~ALGV~p~-~~ 340 (550)
T PTZ00202 273 WVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDTLRSVVKALGVPNV-EA 340 (550)
T ss_pred HHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHHHHHHHHHHcCCCCc-cc
Confidence 9999997433 3467999999999999999999997654 22444432 2568899999999886321 11
Q ss_pred CCCccHHHHHhh-----c-CCceEEEEeC--CCCHHH-HHHHhcccCCCCCCCEEEEEeCChhhHHh-hCCCCccEEEEc
Q 046314 275 GPNIPAYTLERL-----R-RTKVFFVLDD--VSKFEQ-LKYFVGWLHGFCPGSRIVVTTRDKQVLRK-HGVNDEYVYEVE 344 (1137)
Q Consensus 275 ~~~~~~~l~~~L-----~-~kr~LlVLDd--v~~~~~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~-~~~~~~~~~~v~ 344 (1137)
..++.+.+.+.+ . +++.+||+-= -.+... ..+.. .+.....-|+|++----+.+... ...+.-..|.|+
T Consensus 341 k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp 419 (550)
T PTZ00202 341 CGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVP 419 (550)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecC
Confidence 123333444333 2 6677777632 222221 22211 12222345677765433332111 122222379999
Q ss_pred cCCHHHHHHHHHhhc
Q 046314 345 RLNEDEGLELFYKYA 359 (1137)
Q Consensus 345 ~L~~~ea~~Lf~~~a 359 (1137)
+++.++|.++-....
T Consensus 420 ~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 420 NFSRSQAFAYTQHAI 434 (550)
T ss_pred CCCHHHHHHHHhhcc
Confidence 999999998765543
No 73
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.39 E-value=7.2e-06 Score=93.44 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=107.5
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHH
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHK 260 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~ 260 (1137)
|..-++++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++++........++. +. .+...+...+..
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~--~~~~~~~~~~~~ 87 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN--ASDERGIDVIRN 87 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec--cccccchHHHHH
Confidence 445577999999999999988643 3445799999999999999999998643321112221 00 111112221111
Q ss_pred HHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCCCC
Q 046314 261 QVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGVND 337 (1137)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~ 337 (1137)
. +..+.... + .....+-++++|+++.. +..+.|...+....+.+++|+++.... +..... ..
T Consensus 88 ~-i~~~~~~~-~------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~-sr 152 (319)
T PRK00440 88 K-IKEFARTA-P------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ-SR 152 (319)
T ss_pred H-HHHHHhcC-C------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH-HH
Confidence 1 11111000 0 00123558899998753 334455544444456677877764322 211110 11
Q ss_pred ccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 338 EYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 338 ~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
...+++++++.++....+...+......-+ .+....+++.++|.+--
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~--~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEIT--DDALEAIYYVSEGDMRK 199 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 227899999999998888887754332211 45667788999998754
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=2e-08 Score=107.10 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=25.9
Q ss_pred ccccceeEEecCCCCCCCccCC-----CCCCCcccEeeccCCCC
Q 046314 635 VKAFKLKSINLSHSQYLIRIPD-----PSETPSLERINLWNCTN 673 (1137)
Q Consensus 635 ~~l~~L~~L~Ls~n~~~~~~p~-----~~~l~~L~~L~L~~~~~ 673 (1137)
..+++|++||||.|-+-..-+. ++.+.+|++|.|.+|..
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 3455888888888876443332 35677888888877754
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=98.38 E-value=8.4e-06 Score=97.62 Aligned_cols=182 Identities=15% Similarity=0.170 Sum_probs=108.6
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCC--CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGF--PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
.|...++++|.+..++++..++..-. ...+.+.|+|++|+||||+|+++++++. |+. +.+ + .++... ..
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-iel-n----asd~r~-~~ 79 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IEL-N----ASDQRT-AD 79 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEE-c----cccccc-HH
Confidence 45556789999999999999886321 2267899999999999999999999873 222 111 1 122111 12
Q ss_pred HHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH------HHHHHHhcccCCCCCCCEEEEEeCChh-hH
Q 046314 258 LHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF------EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VL 330 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~ 330 (1137)
....++...... ......++-+||+|+++.. ..++.+...+. ..+..||+|+.+.. ..
T Consensus 80 ~i~~~i~~~~~~-------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 80 VIERVAGEAATS-------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHHhhcc-------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 222222221110 0011136779999999764 22455544433 23455666664432 11
Q ss_pred H-hhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHH
Q 046314 331 R-KHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALE 388 (1137)
Q Consensus 331 ~-~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~ 388 (1137)
. ... .....+++++++.++....+...+.......+ .+....|++.++|..-.+.
T Consensus 145 ~k~Lr-sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 145 LRELR-NACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hhhHh-ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 1 111 11237999999999999888877644332222 4567888899988765443
No 76
>PF13173 AAA_14: AAA domain
Probab=98.37 E-value=1.6e-06 Score=83.84 Aligned_cols=122 Identities=22% Similarity=0.263 Sum_probs=78.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLR 287 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 287 (1137)
-+++.|.|+.|+|||||+++++++.. .-...+++. ..+ .. ...... . +..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~----~~-~~~~~~--~-------------~~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDD----PR-DRRLAD--P-------------DLLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCC----HH-HHHHhh--h-------------hhHHHHHHhhc
Confidence 36899999999999999999998766 333444443 111 00 000000 0 01222333444
Q ss_pred CCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhHHhhC----CCCccEEEEccCCHHHH
Q 046314 288 RTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKHG----VNDEYVYEVERLNEDEG 351 (1137)
Q Consensus 288 ~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~----~~~~~~~~v~~L~~~ea 351 (1137)
+++.+|+||+|.....|...+..+...++..+||+|+.....+.... ......+++.||+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 57889999999988887777666555556789999999877653311 11223689999998874
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=1.3e-05 Score=90.71 Aligned_cols=183 Identities=13% Similarity=0.157 Sum_probs=107.6
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh-ccCCceEEEeeccchhccCcChHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS-NEFEGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
.|...++++|.+.-++.|..++..+ +.+.+.++|++|+||||+|+.+++.+. ..|...+.-.+ .++..+...+
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln----~sd~~~~~~v 81 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN----ASDDRGIDVV 81 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec----ccccccHHHH
Confidence 4556678999999899888887533 345577999999999999999999863 33432222111 1222233222
Q ss_pred HHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCC
Q 046314 259 HKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGV 335 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~ 335 (1137)
. +.+......... .-.++.-++|||+++.. .+-+.|...+....+.+++|+++.... +.....
T Consensus 82 r-~~i~~~~~~~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~- 147 (319)
T PLN03025 82 R-NKIKMFAQKKVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ- 147 (319)
T ss_pred H-HHHHHHHhcccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH-
Confidence 2 222211110000 00134568999999763 233444444444456677877765432 211111
Q ss_pred CCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc
Q 046314 336 NDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 336 ~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P 384 (1137)
.....+++++++.++..+.+...+-.....-+ .+....+++.++|..
T Consensus 148 SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDl 194 (319)
T PLN03025 148 SRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDM 194 (319)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Confidence 11227999999999999888877644332221 455678888888876
No 78
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1.4e-05 Score=95.74 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=109.5
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC---------------------Cc
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF---------------------EG 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~ 238 (1137)
.|...+++||.+.-++.|..++..+ .-.+.+.++|..|+||||+|+.+++.+...- ..
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 3556688999999999999998643 2246789999999999999999988653211 01
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE--QLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~ 316 (1137)
.+.+. .....++.. .++++.... ..-..+++-++|+|+++... ....|+..+.....
T Consensus 90 vlEid-----aAs~~gVd~-IRelle~a~---------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~ 148 (709)
T PRK08691 90 LLEID-----AASNTGIDN-IREVLENAQ---------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (709)
T ss_pred eEEEe-----ccccCCHHH-HHHHHHHHH---------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCC
Confidence 11111 011111111 111111100 00112456689999997743 35566665554445
Q ss_pred CCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 317 GSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 317 gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
..++|++|.+.. +.... ......+.+++++.++..+.+.+.+-+....-+ .+....|++.++|.+.-
T Consensus 149 ~v~fILaTtd~~kL~~TI-rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id--~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 149 HVKFILATTDPHKVPVTV-LSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE--PPALQLLGRAAAGSMRD 216 (709)
T ss_pred CcEEEEEeCCccccchHH-HHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHhCCCHHH
Confidence 677777776543 22111 111226889999999999988877644332211 45567889999998843
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=9.7e-06 Score=95.75 Aligned_cols=186 Identities=15% Similarity=0.158 Sum_probs=111.8
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC-------ceEEEee--------
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE-------GNCFIEN-------- 244 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~-------- 244 (1137)
.|....++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. ..|..+.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 4556678999999999998877543 23467889999999999999999987632110 0111110
Q ss_pred ----ccc-hhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCC
Q 046314 245 ----VRE-EIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPG 317 (1137)
Q Consensus 245 ----~~~-~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 317 (1137)
+.+ ......+...+.. ++.... ..-+.+++-++|+|+++.. .+++.|+..+....+.
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~-iie~a~---------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRR-IIESAE---------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHH-HHHHHH---------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC
Confidence 000 0001112222211 111110 0112356678999999874 4577777766655556
Q ss_pred CEEEE-EeCChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 318 SRIVV-TTRDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 318 srIIi-TTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
..+|+ ||+.+.+..... .....+++.+++.++..+.+...+.......+ .+....|++.++|.+-
T Consensus 159 ~vfI~aTte~~kI~~tI~-SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie--~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 159 IIFIFATTEVQKIPATII-SRCQRYDLRRLSFEEIFKLLEYITKQENLKTD--IEALRIIAYKSEGSAR 224 (507)
T ss_pred EEEEEEeCChHHhhHHHH-hcceEEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 66654 555545443322 12237999999999999999888754332221 3455678889999873
No 80
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.33 E-value=3.4e-06 Score=97.42 Aligned_cols=173 Identities=19% Similarity=0.265 Sum_probs=101.1
Q ss_pred CCCCccchhhHHHHHHHhhccC-----------CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhcc
Q 046314 183 SSKGLVGLNSRIECIKSLLCVG-----------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIEN 251 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~ 251 (1137)
..+++.|++..+++|.+.+... -...+-|.++|++|+|||++|++++++....|-... .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-----~----- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-----G----- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc-----h-----
Confidence 3467899999999998876421 123566999999999999999999998765542111 0
Q ss_pred CcChHHHHHHHHHHHhCccccCCCCCccH-HHHHhhcCCceEEEEeCCCCH-------------H---HHHHHhcccCCC
Q 046314 252 GVGLVHLHKQVVSLLLGERIEMGGPNIPA-YTLERLRRTKVFFVLDDVSKF-------------E---QLKYFVGWLHGF 314 (1137)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~-------------~---~l~~l~~~~~~~ 314 (1137)
..+....... ....+. .+...-...+.+|+||+++.. + .+..++..+..+
T Consensus 190 ----~~l~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ----SELVRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ----HHHHHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 0111110000 000011 111112345679999998643 1 133333333222
Q ss_pred --CCCCEEEEEeCChhhHHh-----hCCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCCc
Q 046314 315 --CPGSRIVVTTRDKQVLRK-----HGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 315 --~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~P 384 (1137)
..+.+||.||........ ...+. .++++..+.++..++|..++.+..... .++ ..+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~--~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDR--IIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCce--EEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 246678888875432211 12334 799999999999999998876544332 122 45566676653
No 81
>PRK08727 hypothetical protein; Validated
Probab=98.32 E-value=1.5e-05 Score=85.63 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=95.4
Q ss_pred CCCccchhh-HHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHH
Q 046314 184 SKGLVGLNS-RIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQV 262 (1137)
Q Consensus 184 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~l 262 (1137)
.++||+... .+..+..+.. + .....+.|+|.+|+|||+||+++++....+...+.|+. .. +....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-----~~------~~~~~~ 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-----LQ------AAAGRL 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-----HH------HhhhhH
Confidence 355665543 3333333332 2 22345999999999999999999998776655566654 11 111111
Q ss_pred HHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----HHHHHHhcccCC-CCCCCEEEEEeCChh---------
Q 046314 263 VSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----EQLKYFVGWLHG-FCPGSRIVVTTRDKQ--------- 328 (1137)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----~~l~~l~~~~~~-~~~gsrIIiTTR~~~--------- 328 (1137)
.. ..+.+ .+.-+||+||++.. ..-+.+...+.. ...|..||+|++...
T Consensus 85 ~~-----------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 85 RD-----------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred HH-----------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 10 01122 12348999999642 211223222211 124667999998532
Q ss_pred hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 329 VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 329 v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
+...+... ..+++++++.++-.+++.+++.......+ .+...-+++.+.|-.-+
T Consensus 147 L~SRl~~~--~~~~l~~~~~e~~~~iL~~~a~~~~l~l~--~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 147 LRSRLAQC--IRIGLPVLDDVARAAVLRERAQRRGLALD--EAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHHhcC--ceEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhCCCCHHH
Confidence 22222222 38999999999999999987754322221 45556667777655443
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.7e-05 Score=91.19 Aligned_cols=179 Identities=11% Similarity=0.095 Sum_probs=108.3
Q ss_pred CCCccchhhHHHHHHHhhccCCC--------CeEEEEEEccCCChhhHHHHHHHHHhhccC-------------------
Q 046314 184 SKGLVGLNSRIECIKSLLCVGFP--------DVRIVGIWGMGGIGKTTLAKALFNQVSNEF------------------- 236 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------------------- 236 (1137)
.++++|.+.-++.|..++..+.. -.+.+.++|++|+|||++|+.++..+--..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35689999999999998875431 356788999999999999999988653221
Q ss_pred -CceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCC
Q 046314 237 -EGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHG 313 (1137)
Q Consensus 237 -~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~ 313 (1137)
+...++.- .....++.++ +++...+.. .-..+++-++|+|+++.. .....|+..+..
T Consensus 84 hpD~~~i~~----~~~~i~i~~i-R~l~~~~~~---------------~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 84 HPDVRVVAP----EGLSIGVDEV-RELVTIAAR---------------RPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCCEEEecc----ccccCCHHHH-HHHHHHHHh---------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 11112210 0001111111 111111110 001234557888999764 345566666655
Q ss_pred CCCCCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 314 FCPGSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 314 ~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
..++..+|++|.+.. +..... .....+.+++++.++..+.+.... + . . .+.+..++..++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIr-SRc~~i~f~~~~~~~i~~~L~~~~-~--~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIR-SRCRHVALRTPSVEAVAEVLVRRD-G--V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHH-hhCeEEECCCCCHHHHHHHHHHhc-C--C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 556777777766643 332221 223489999999999998887542 1 1 1 345678899999999755444
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.1e-05 Score=97.37 Aligned_cols=183 Identities=14% Similarity=0.120 Sum_probs=112.0
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC---------------------Cc
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF---------------------EG 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~ 238 (1137)
.|...+++||.+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+-... ..
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D 89 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVD 89 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCC
Confidence 34567889999999999999886442 245578999999999999999998653321 11
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 316 (1137)
.+.+. .....++..+ ++++..+. ..-..+++-++|+|+++.. ...+.|+..+....+
T Consensus 90 ~ieid-----aas~~~Vddi-R~li~~~~---------------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~ 148 (647)
T PRK07994 90 LIEID-----AASRTKVEDT-RELLDNVQ---------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 (647)
T ss_pred ceeec-----ccccCCHHHH-HHHHHHHH---------------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCC
Confidence 11111 0001111111 12221110 1112356678999999763 457777776665556
Q ss_pred CCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhH
Q 046314 317 GSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 317 gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal 387 (1137)
..++|.+|.+.+ +..... .....|.+++++.++..+.+...+-......+ .+....|++.++|.+--+
T Consensus 149 ~v~FIL~Tt~~~kLl~TI~-SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e--~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 149 HVKFLLATTDPQKLPVTIL-SRCLQFHLKALDVEQIRQQLEHILQAEQIPFE--PRALQLLARAADGSMRDA 217 (647)
T ss_pred CeEEEEecCCccccchHHH-hhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 666666555543 332211 12348999999999999988876533222111 345577899999988533
No 84
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.4e-05 Score=93.50 Aligned_cols=181 Identities=13% Similarity=0.167 Sum_probs=112.4
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc---------------------cCCc
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN---------------------EFEG 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------------~F~~ 238 (1137)
.|...+++||.+.-++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-- .+..
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 35566889999999999988886442 2457899999999999999999885421 1122
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 316 (1137)
++.+. .+...+...+. +++..... .-...++-++|+|+++.. +..+.|+..+....+
T Consensus 87 v~eid-----aas~~~vddIR-~Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 87 VIEID-----AASNTSVDDIK-VILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred EEEEe-----cccCCCHHHHH-HHHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 22222 11122332222 22211110 001245568999999764 447777777766666
Q ss_pred CCEEEEEeCC-hhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 317 GSRIVVTTRD-KQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 317 gsrIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
..++|++|.+ +.+..... .....+++++++.++..+.+...+......-+ .+....|++.++|.+-
T Consensus 146 ~v~fIlatte~~Kl~~tI~-SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~--~eAL~lIa~~s~GslR 212 (491)
T PRK14964 146 HVKFILATTEVKKIPVTII-SRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD--EESLKLIAENSSGSMR 212 (491)
T ss_pred CeEEEEEeCChHHHHHHHH-HhheeeecccccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 7777666543 34433221 12237999999999999998887654332221 4556778889988774
No 85
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.5e-05 Score=90.04 Aligned_cols=178 Identities=15% Similarity=0.185 Sum_probs=110.4
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc------cCCceEEEeeccchhccCcChHHH
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN------EFEGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
++++|.+.-++.+...+..+ .-.+...++|+.|+||||+|+++++.+-. +.|...|.. .. ....+..++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~---~~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN---KKSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc---CCCCCHHHH
Confidence 56889999999999988643 23567789999999999999999987622 223222221 00 111222332
Q ss_pred HHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCC--CHHHHHHHhcccCCCCCCCEEEEEeCChhhH-HhhCC
Q 046314 259 HKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVS--KFEQLKYFVGWLHGFCPGSRIVVTTRDKQVL-RKHGV 335 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~~~~ 335 (1137)
. ++...+.. .-..+++=++|+|+++ +.+..+.|+..+....+++.+|++|.+.+.+ ... .
T Consensus 79 r-~~~~~~~~---------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI-~ 141 (313)
T PRK05564 79 R-NIIEEVNK---------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI-K 141 (313)
T ss_pred H-HHHHHHhc---------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH-H
Confidence 2 22222211 0112344456666664 4566888888887777889998888765422 211 1
Q ss_pred CCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 336 NDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 336 ~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
.....+++.+++.++..+.+.+...+ .. .+.++.++.+++|.|..+..+
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~---~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND---IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 12238999999999998888665321 11 334667899999998755443
No 86
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=6.8e-06 Score=81.50 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=70.6
Q ss_pred cchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHh
Q 046314 188 VGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLL 267 (1137)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~ 267 (1137)
+|++..+.++...+... ..+.+.|+|.+|+|||++|+++++.+...-..++++. ..+ ..............
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~----~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASD----LLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhh----hhhhhHHHHHhhhh--
Confidence 47888999998887532 3568899999999999999999998754333344443 211 11111111000000
Q ss_pred CccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HH---HHHHhcccCCC---CCCCEEEEEeCChh
Q 046314 268 GERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQ---LKYFVGWLHGF---CPGSRIVVTTRDKQ 328 (1137)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~---l~~l~~~~~~~---~~gsrIIiTTR~~~ 328 (1137)
............++.++|+||++.. .. +..++...... ..+.+||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000112223456789999999853 22 33333333221 36778888888643
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=4.6e-05 Score=91.86 Aligned_cols=195 Identities=15% Similarity=0.139 Sum_probs=109.0
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc--C--CceEEEeeccchhccCcCh
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE--F--EGNCFIENVREEIENGVGL 255 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F--~~~~~~~~~~~~~s~~~~~ 255 (1137)
.|...+++||-+.-++.|..++..+ .-...+.++|..|+||||+|+.+++.+--. . .+.. ....+.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~---------~~pCg~ 80 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT---------ATPCGV 80 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC---------CCCCCc
Confidence 3456688999999999999988644 234677899999999999999998865311 0 0000 000000
Q ss_pred HHHHHHHHHHHhCccccCCC--CCccHHHHHhh--------cCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEE
Q 046314 256 VHLHKQVVSLLLGERIEMGG--PNIPAYTLERL--------RRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVT 323 (1137)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~--~~~~~~l~~~L--------~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiT 323 (1137)
-...+.+...-...-...+. ..-++.+++.+ .++.-++|||+|+.. +..+.|+..+.......++|++
T Consensus 81 C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred cHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 00011110000000000000 00011111111 234558899999874 4467777766654556666666
Q ss_pred eCC-hhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhH
Q 046314 324 TRD-KQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 324 TR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal 387 (1137)
|.+ ..+.... ......+++++++.++..+.+...+.......+ .+....|++.++|.+--+
T Consensus 161 Ttd~~kil~TI-lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 161 TTDPQKVPVTV-LSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRDA 222 (618)
T ss_pred ECCchhhhHHH-HHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 544 3333221 112238999999999999888876643332222 455677888998877433
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.28 E-value=2.5e-05 Score=90.45 Aligned_cols=186 Identities=13% Similarity=0.118 Sum_probs=113.2
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc----CC-----------------c
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE----FE-----------------G 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~ 238 (1137)
.|...++++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.++..+... +. .
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 34556789999999999999886432 24578899999999999999999876422 11 0
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 316 (1137)
...+. .....+.. ..+++...+.. .-..+++-++|+|+++.. +....++..+....+
T Consensus 88 ~~~~~-----~~~~~~~~-~~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 88 VIEID-----AASNNGVD-DIREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred EEEee-----ccccCCHH-HHHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 11111 00001111 11122221110 001234558889998654 446667666655556
Q ss_pred CCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 317 GSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 317 gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
...+|++|.+.. +..... .....++.++++.++..+++...+-......+ .+.+..+++.++|.|..+...
T Consensus 147 ~~~lIl~~~~~~~l~~~l~-sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 147 HVVFILATTEPHKIPATIL-SRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSL 218 (355)
T ss_pred ceeEEEEeCCHHHHHHHHH-hheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHH
Confidence 677777765544 232221 11237899999999999998887644332222 466778899999998655444
No 89
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.27 E-value=4.4e-08 Score=104.60 Aligned_cols=136 Identities=21% Similarity=0.228 Sum_probs=86.3
Q ss_pred ccCCCCCcEEecccccccc----cccccccCCCCCcEeccccccccc----ccccccCCCCCcceecccCccccccCc-h
Q 046314 748 VECLTNLEYLYINRCKRLK----RVSTSICKLKSLIWLCLNECLNLE----KSWSELGNLKSFQYIGAHGSTISQLPH-L 818 (1137)
Q Consensus 748 i~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~l~~n~i~~lp~-~ 818 (1137)
++.-++|+.+...+|++-. .+-..+...+.|+.+.++.|.+.. .+...+..+++|+.|++.+|.++.--. .
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 3445667777777765432 122335556777777777766543 233557788888888888887763211 1
Q ss_pred hhccccccccccCCCCCCCEEeecCCCCCC-----ccccc-CCCCCCCEEEccCCCCCcCC------CCCCcccccceec
Q 046314 819 LSHLVSLHASLLSGLSSLNWLNLNNCALTA-----IPEEI-GCLPSLEWLELRGNNFESLP------SIPELPPSLKWLQ 886 (1137)
Q Consensus 819 l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~Ls~n~l~~lp------~~~~l~~~L~~L~ 886 (1137)
+.. .++.+++|+.|++++|.+.. +-..+ ...|+|+.|.|.+|.++.-. ++...+ .|..|+
T Consensus 233 Lak-------aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~-dL~kLn 304 (382)
T KOG1909|consen 233 LAK-------ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP-DLEKLN 304 (382)
T ss_pred HHH-------HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch-hhHHhc
Confidence 111 24557789999999998874 33333 34789999999999887422 344444 788888
Q ss_pred ccccc
Q 046314 887 ASNCK 891 (1137)
Q Consensus 887 l~~c~ 891 (1137)
|++|.
T Consensus 305 LngN~ 309 (382)
T KOG1909|consen 305 LNGNR 309 (382)
T ss_pred CCccc
Confidence 88775
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.27 E-value=9.4e-06 Score=87.34 Aligned_cols=176 Identities=16% Similarity=0.225 Sum_probs=97.0
Q ss_pred CCCCcc-chhhHH-HHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHH
Q 046314 183 SSKGLV-GLNSRI-ECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHK 260 (1137)
Q Consensus 183 ~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~ 260 (1137)
..++|+ |.+... ..+.++.. +....+.+.|+|.+|+|||+||+++++.....-....++. ... ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-----~~~------~~~ 83 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-----AAS------PLL 83 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-----hHH------hHH
Confidence 345555 554444 44444433 2234567899999999999999999997644333344443 111 000
Q ss_pred HHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCC-CCCC-EEEEEeCChhhHHhh---
Q 046314 261 QVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGF-CPGS-RIVVTTRDKQVLRKH--- 333 (1137)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~-~~gs-rIIiTTR~~~v~~~~--- 333 (1137)
.+ .. ....-+||+||++.. .+.+.+...+... ..+. .||+|++........
T Consensus 84 ~~---------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 84 AF---------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred HH---------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 00 01 112347889999653 2223332222111 1344 366666643211100
Q ss_pred ---CCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhh
Q 046314 334 ---GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSL 394 (1137)
Q Consensus 334 ---~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L 394 (1137)
.......++++++++++-.+++...+-......+ ++..+.+++...|++..+..+...+
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~--~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA--DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1111238999999999877777664422222222 4566778888999998877766554
No 91
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.1e-08 Score=102.92 Aligned_cols=159 Identities=19% Similarity=0.147 Sum_probs=94.2
Q ss_pred ccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccC--ccccCCCcCceE
Q 046314 614 NLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVP--SSIQNFNHLSLL 690 (1137)
Q Consensus 614 ~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p--~~i~~L~~L~~L 690 (1137)
.|++|||++..|+.-.-..-..+|.+|+.|.|.++++...+.. +.+-.+|+.|+|+.|....+.. -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777777777776443333344566888888888876555443 5777888888888887655432 235677888888
Q ss_pred eccCCcCcccCCCCC-C--CCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEeccccccccc
Q 046314 691 CFQGCKNLRSFPSNL-H--FVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKR 767 (1137)
Q Consensus 691 ~L~~c~~l~~lp~~~-~--l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~ 767 (1137)
+|+.|......-..+ . -+.|..|+++||...- ....+..-...+++|..|||++|..+..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----------------~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----------------QKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----------------hhhHHHHHHHhCCceeeeccccccccCc
Confidence 888875433221100 0 2334444444442200 0112212245677888888888765543
Q ss_pred -ccccccCCCCCcEecccccccc
Q 046314 768 -VSTSICKLKSLIWLCLNECLNL 789 (1137)
Q Consensus 768 -lp~~l~~l~~L~~L~L~~~~~~ 789 (1137)
.-..|.+++.|++|.++.|..+
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCC
Confidence 2233566777888888777644
No 92
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.5e-06 Score=107.16 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=32.1
Q ss_pred CcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccc
Q 046314 754 LEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTI 812 (1137)
Q Consensus 754 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i 812 (1137)
++.|+|++|.+.+.+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC
Confidence 45556666666566666666666666666666655555554444444444444444433
No 93
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.25 E-value=2.2e-06 Score=83.49 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=73.1
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc-----CCceEEEeeccchhccCcChHHHHHHHHHHHhCcccc-CCCCCccH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE-----FEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIE-MGGPNIPA 280 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~ 280 (1137)
+-+++.|+|.+|+|||++++.+++..... -..++|+. .........+...++..+...... .......+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 35789999999999999999999976543 23445554 444457888999999888765543 23334445
Q ss_pred HHHHhhcCCc-eEEEEeCCCCH---HHHHHHhcccCCCCCCCEEEEEeCC
Q 046314 281 YTLERLRRTK-VFFVLDDVSKF---EQLKYFVGWLHGFCPGSRIVVTTRD 326 (1137)
Q Consensus 281 ~l~~~L~~kr-~LlVLDdv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~ 326 (1137)
.+.+.+...+ .+||+|+++.. +.++.+..... ..+.++|+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 5666666555 49999999765 23555544333 567778887765
No 94
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.5e-05 Score=90.42 Aligned_cols=197 Identities=13% Similarity=0.080 Sum_probs=115.2
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc----CCceEEEeeccchhccCcCh
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE----FEGNCFIENVREEIENGVGL 255 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~~s~~~~~ 255 (1137)
.|...+.++|-+...+.+...+..+. -...+.|+|+.|+||||+|+.+++.+-.. +..... ....+-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~--------~~~~~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL--------ADPDPA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc--------CCCCCC
Confidence 45677889999999999999986442 35678999999999999999999976432 111100 000001
Q ss_pred HHHHHHHHHHHh-------C---ccc-cCCC---CCccHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcccCCC
Q 046314 256 VHLHKQVVSLLL-------G---ERI-EMGG---PNIPAYTLERL-----RRTKVFFVLDDVSKF--EQLKYFVGWLHGF 314 (1137)
Q Consensus 256 ~~l~~~ll~~l~-------~---~~~-~~~~---~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~ 314 (1137)
....+.+...-. . .+. .... .+.+..+.+.+ .+++-++|+|+++.. ...+.|+..+...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 111222211100 0 000 0000 01122223332 245668999999763 4466676666554
Q ss_pred CCCCEEEEEe-CChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 315 CPGSRIVVTT-RDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 315 ~~gsrIIiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
..+..+|++| +...+..... .....+.+.+++.++..+++...+.... . ..+.+..+++.++|.|.....+
T Consensus 169 p~~~~fiLit~~~~~llptIr-SRc~~i~l~pl~~~~~~~~L~~~~~~~~-~---~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIR-SRCQPISLKPLDDDELKKALSHLGSSQG-S---DGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCceEEEEECChhhccHHHH-hhccEEEecCCCHHHHHHHHHHhhcccC-C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 4555555444 4433433222 2234899999999999999987542211 1 1344678899999999865544
No 95
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.24 E-value=5.4e-06 Score=88.78 Aligned_cols=152 Identities=17% Similarity=0.275 Sum_probs=91.6
Q ss_pred CCCCCCccchhhHHHH---HHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHH
Q 046314 181 SDSSKGLVGLNSRIEC---IKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
|..-++.||.+..+.+ |.+++ +.+....+.+||++|.||||||+.+...-..+- ..|+. .+....-..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-----lSAt~a~t~ 204 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-----LSATNAKTN 204 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-----EeccccchH
Confidence 3444566776655543 22333 235677888999999999999999998654432 34554 332222222
Q ss_pred HHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEE--EeCChhhH-Hh
Q 046314 258 LHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVV--TTRDKQVL-RK 332 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIi--TTR~~~v~-~~ 332 (1137)
-.+.++.+... ...+.++|.+|.+|.|.. ..|-+.+++.. -.|.-++| ||.++..- ..
T Consensus 205 dvR~ife~aq~--------------~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 205 DVRDIFEQAQN--------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHHHHHHHHHH--------------HHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhH
Confidence 22333333211 334568899999999965 44455555433 35665555 77776531 11
Q ss_pred hCCCCccEEEEccCCHHHHHHHHHhh
Q 046314 333 HGVNDEYVYEVERLNEDEGLELFYKY 358 (1137)
Q Consensus 333 ~~~~~~~~~~v~~L~~~ea~~Lf~~~ 358 (1137)
.-+....++.+++|+.++...++.+-
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHHH
Confidence 11223348999999999998888773
No 96
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=5.1e-05 Score=90.46 Aligned_cols=182 Identities=12% Similarity=0.119 Sum_probs=109.3
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc---------------------CCc
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE---------------------FEG 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~ 238 (1137)
.|...+++||-+.-++.|..++..+. -.....++|+.|+||||+|+.+++.+--. +..
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 35566889999999999999986432 24567899999999999999999865321 111
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 316 (1137)
...+. .+...++..+. +++..+.. .-..++.-++|+|+|+.. +..+.|+..+....+
T Consensus 90 ~~eid-----aas~~~v~~iR-~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 90 LFEVD-----AASRTKVEDTR-ELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred EEEEc-----ccccCCHHHHH-HHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 22221 11122222221 22222110 011245557899999873 456777766665556
Q ss_pred CCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 317 GSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 317 gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
..++|++|.+.. +.... ......+++++++.++..+.+...+-......+ .+....+++.++|.+.-
T Consensus 149 ~~~fIlattd~~kl~~tI-~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 149 HVKFILATTDHHKLPVTV-LSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRD 216 (509)
T ss_pred CeEEEEEECChHhchHHH-HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHH
Confidence 777776665543 22221 111237899999999887776655533222211 34456788888888743
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2.3e-05 Score=93.22 Aligned_cols=186 Identities=15% Similarity=0.132 Sum_probs=107.8
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC--C-------------------c
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF--E-------------------G 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~-------------------~ 238 (1137)
.|...++++|.+.-++.+..++..+ .-.+.+.++|+.|+||||+|+.+++.+...- . .
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence 4556788999999999999988644 2346788999999999999999998763210 0 0
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC--HHHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~ 316 (1137)
..++. .+...++..+ +.+...+.. .-...++-++|+|+++. .+....|+..+....+
T Consensus 90 iieId-----aas~igVd~I-ReIi~~~~~---------------~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~ 148 (605)
T PRK05896 90 IVELD-----AASNNGVDEI-RNIIDNINY---------------LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPK 148 (605)
T ss_pred eEEec-----cccccCHHHH-HHHHHHHHh---------------chhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCC
Confidence 01110 0001111111 111111100 00112333699999976 3456667665554445
Q ss_pred CCEEEEEeCC-hhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch-hHHHH
Q 046314 317 GSRIVVTTRD-KQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL-ALEVL 390 (1137)
Q Consensus 317 gsrIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL-al~~l 390 (1137)
...+|++|.. ..+..... .....+++.+++.++....+...+-.....-+ .+.+..+++.++|.+- |+..+
T Consensus 149 ~tvfIL~Tt~~~KLl~TI~-SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is--~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 149 HVVFIFATTEFQKIPLTII-SRCQRYNFKKLNNSELQELLKSIAKKEKIKIE--DNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred cEEEEEECCChHhhhHHHH-hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 5666555543 33332211 11237999999999999888876643321111 3456778889998764 44433
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.22 E-value=3.3e-05 Score=80.41 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=91.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhcc---------------------CCceEEEeeccchhccCcChHHHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNE---------------------FEGNCFIENVREEIENGVGLVHLHKQVVSLL 266 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l 266 (1137)
...+.++|+.|+||||+|+.+.+.+... ++...++... ....+.+.+ +++...+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~----~~~~~~~~i-~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE----GQSIKVDQV-RELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc----cCcCCHHHH-HHHHHHH
Confidence 4678999999999999999999887432 1112222100 001111111 1122111
Q ss_pred hCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCCh-hhHHhhCCCCccEEEE
Q 046314 267 LGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDK-QVLRKHGVNDEYVYEV 343 (1137)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~~v 343 (1137)
.. .-..+.+-++|+||++.. +..+.|+..+....+.+.+|++|++. .+..... .....+++
T Consensus 89 ~~---------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~-sr~~~~~~ 152 (188)
T TIGR00678 89 SR---------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR-SRCQVLPF 152 (188)
T ss_pred cc---------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH-hhcEEeeC
Confidence 10 001245668899999764 34667777666656677777777654 2322221 12248999
Q ss_pred ccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 344 ERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 344 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
.+++.++..+.+.+. + .. .+.+..+++.++|.|..
T Consensus 153 ~~~~~~~~~~~l~~~--g---i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ--G---IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred CCCCHHHHHHHHHHc--C---CC---HHHHHHHHHHcCCCccc
Confidence 999999999998887 1 11 45678899999999863
No 99
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=8.4e-05 Score=84.64 Aligned_cols=287 Identities=14% Similarity=0.133 Sum_probs=166.2
Q ss_pred CCCCCCCccchhhHHHHHHHhhccC--CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCc--eEEEeeccchhccCcCh
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVG--FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEG--NCFIENVREEIENGVGL 255 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~s~~~~~ 255 (1137)
+...++.+.+||.+++++...|..- ...+.-+.|+|.+|.|||+.++.+++++...... ++++. +....+.
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-----c~~~~t~ 86 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-----CLELRTP 86 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-----eeeCCCH
Confidence 3455667999999999999887631 2223348899999999999999999988766443 35554 4446677
Q ss_pred HHHHHHHHHHHhCcc-ccCCCCCccHHHHHhhc--CCceEEEEeCCCCHHHH--HHHhcccCCCCC-CCEE--EEEeCCh
Q 046314 256 VHLHKQVVSLLLGER-IEMGGPNIPAYTLERLR--RTKVFFVLDDVSKFEQL--KYFVGWLHGFCP-GSRI--VVTTRDK 327 (1137)
Q Consensus 256 ~~l~~~ll~~l~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~l--~~l~~~~~~~~~-gsrI--IiTTR~~ 327 (1137)
.++..+++.++.... ......+..+.+.+.+. ++.+++|||+++....- +.|...+.+... .++| |..+-+.
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccH
Confidence 788888888876222 22334444555566664 57899999999653221 222222222222 4544 3344443
Q ss_pred hhHHhhC-----CCCccEEEEccCCHHHHHHHHHhhc---ccCCCCChhHHHHHHHHHHHhCCCc-hhHHHHhhhh--cc
Q 046314 328 QVLRKHG-----VNDEYVYEVERLNEDEGLELFYKYA---FRQSHCPEHLTALSKKAVRYAEGNP-LALEVLGSSL--HQ 396 (1137)
Q Consensus 328 ~v~~~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~l~~~iv~~~~G~P-Lal~~lg~~L--~~ 396 (1137)
....... .-....+..++-+.+|-...+..++ |......++..+++..++.+.+|-. .|+..+-.+. .+
T Consensus 167 ~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 167 KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 3322211 1111247788888899888888775 4445555666677777777777632 3443332221 11
Q ss_pred C------CHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhcccccCCcCH----HHHHHHHhhcCC---ch
Q 046314 397 K------SKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFFKGECK----DRVLMLLHDRQY---NV 463 (1137)
Q Consensus 397 ~------~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~----~~l~~~~~~~~~---~~ 463 (1137)
+ +.+.-..+.. ..-.....-....|+.++|-.++.++.--..... +....+....+. ..
T Consensus 247 ~~~~~~v~~~~v~~a~~--------~~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~ 318 (366)
T COG1474 247 REGSRKVSEDHVREAQE--------EIERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRF 318 (366)
T ss_pred hhCCCCcCHHHHHHHHH--------HhhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHH
Confidence 0 1111111111 1112234444788999998887777666322222 233333433444 33
Q ss_pred hHHHHHHHhccCceee
Q 046314 464 THVLSILIDKSLITEH 479 (1137)
Q Consensus 464 ~~~l~~L~~~sLi~~~ 479 (1137)
...+..|...++|...
T Consensus 319 ~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 319 SDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHhcCeEEee
Confidence 4567778888888654
No 100
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.1e-05 Score=91.58 Aligned_cols=190 Identities=15% Similarity=0.123 Sum_probs=113.5
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC---------------------Cc
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF---------------------EG 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~ 238 (1137)
.|...+++||-+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+-... ..
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc
Confidence 3455678999998888888888643 2246788999999999999999998763211 00
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 316 (1137)
..++. .....++..+. .+...+. ..-..+++-++|+|+++.. +....|+..+....+
T Consensus 90 v~eId-----~a~~~~Id~iR-~L~~~~~---------------~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~ 148 (624)
T PRK14959 90 VVEID-----GASNRGIDDAK-RLKEAIG---------------YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPA 148 (624)
T ss_pred eEEEe-----cccccCHHHHH-HHHHHHH---------------hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCC
Confidence 11111 00011111111 1111110 0112355668999999764 446667666654445
Q ss_pred CCEEEEEeCCh-hhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc-hhHHHHhhhh
Q 046314 317 GSRIVVTTRDK-QVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP-LALEVLGSSL 394 (1137)
Q Consensus 317 gsrIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P-Lal~~lg~~L 394 (1137)
...+|++|.+. .+..... .....+++++++.++..+.+...+......-+ .+.++.|++.++|.+ .|+..+...+
T Consensus 149 ~~ifILaTt~~~kll~TI~-SRcq~i~F~pLs~~eL~~~L~~il~~egi~id--~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 149 RVTFVLATTEPHKFPVTIV-SRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD--PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CEEEEEecCChhhhhHHHH-hhhhccccCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56666655553 3332211 11237899999999999888876644332111 456678888999865 5666665443
No 101
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.19 E-value=2e-05 Score=97.27 Aligned_cols=172 Identities=18% Similarity=0.294 Sum_probs=99.5
Q ss_pred CCCCCCccchhhHHH---HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHH
Q 046314 181 SDSSKGLVGLNSRIE---CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
|...++++|.+..+. .+.+++.. +....+.++|++|+||||||+.+++.....|. .+. .. ..+...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln-----a~-~~~i~d 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN-----AV-LAGVKD 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh-----hh-hhhhHH
Confidence 445577999998875 45566543 34567789999999999999999998765552 121 00 011111
Q ss_pred HHHHHHHHHhCccccCCCCCccHHHHHh--hcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEE--eCChh--h
Q 046314 258 LHKQVVSLLLGERIEMGGPNIPAYTLER--LRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVT--TRDKQ--V 329 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiT--TR~~~--v 329 (1137)
+ ++.+... .+. ..+++.+||||||+. ..+.+.|..... .|..++|+ |.+.. +
T Consensus 93 i-r~~i~~a----------------~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 93 L-RAEVDRA----------------KERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEV 152 (725)
T ss_pred H-HHHHHHH----------------HHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhh
Confidence 1 1111111 111 124577999999964 455566665332 35555553 44432 1
Q ss_pred HHhhCCCCccEEEEccCCHHHHHHHHHhhcccC-----CCCChhHHHHHHHHHHHhCCCc
Q 046314 330 LRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQ-----SHCPEHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 330 ~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~l~~~iv~~~~G~P 384 (1137)
..... ....++.+++|+.++..+++.+.+-.. .....-..+....+++++.|..
T Consensus 153 ~~aL~-SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 153 NKALV-SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hhHhh-ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 11111 112379999999999999988765310 0111112455677788888864
No 102
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.18 E-value=2.5e-06 Score=88.66 Aligned_cols=50 Identities=30% Similarity=0.427 Sum_probs=35.8
Q ss_pred CccchhhHHHHHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 186 GLVGLNSRIECIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
+||||+++++++...+. ......+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999995 233557999999999999999999999988776
No 103
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.17 E-value=4.2e-05 Score=82.39 Aligned_cols=170 Identities=14% Similarity=0.246 Sum_probs=94.3
Q ss_pred CCcc-chhh-HHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHH
Q 046314 185 KGLV-GLNS-RIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQV 262 (1137)
Q Consensus 185 ~~~v-Gr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~l 262 (1137)
++|+ |-+. .+..+.++.. ....+.+.|+|++|+|||+||+++++....+-..+.|+. ..... ....++
T Consensus 22 d~f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-----~~~~~---~~~~~~ 91 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-----LDKRA---WFVPEV 91 (235)
T ss_pred cccccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-----HHHHh---hhhHHH
Confidence 4454 6333 3344444432 223457899999999999999999998765544455554 21100 000011
Q ss_pred HHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH---HHHHH-HhcccCCC-CCC-CEEEEEeCChh--------
Q 046314 263 VSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF---EQLKY-FVGWLHGF-CPG-SRIVVTTRDKQ-------- 328 (1137)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~l~~-l~~~~~~~-~~g-srIIiTTR~~~-------- 328 (1137)
.+.+.. --+|++||++.. .+|+. +...+... ..| .++|+||+...
T Consensus 92 --------------------~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 92 --------------------LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred --------------------HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 111111 237899999653 22322 21111111 123 47999997542
Q ss_pred -hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 046314 329 -VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEV 389 (1137)
Q Consensus 329 -v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~ 389 (1137)
+...+.... +++++++++++-.+++.+++.......+ ++...-+++++.|..-++..
T Consensus 151 ~L~SRl~~g~--~~~l~~~~~~~~~~~l~~~a~~~~~~l~--~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 151 DLASRLDWGQ--IYKLQPLSDEEKLQALQLRARLRGFELP--EDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHHHhCCc--eeeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhhcCCHHHHHH
Confidence 222333333 8999999999999998876643322111 55666677777766544433
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=9.2e-05 Score=89.01 Aligned_cols=191 Identities=17% Similarity=0.161 Sum_probs=110.6
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC--C-ceEEEe--------------
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF--E-GNCFIE-------------- 243 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~-~~~~~~-------------- 243 (1137)
|...+++||.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+.-.. . .-|-.+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 456678999999999999998643 2245578999999999999999998764211 0 000000
Q ss_pred eccc-hhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEE
Q 046314 244 NVRE-EIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRI 320 (1137)
Q Consensus 244 ~~~~-~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrI 320 (1137)
++-+ ..+...++..+ +++...+. ..-...++-++|+|+++. .+..+.|+..+....+...+
T Consensus 88 dvieidaas~~gvd~i-Rel~~~~~---------------~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 88 DVVELDAASHGGVDDT-RELRDRAF---------------YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred eEEEeccccccCHHHH-HHHHHHHH---------------hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 0000 00001111111 11111100 001124555889999975 34577777777655566666
Q ss_pred EEEe-CChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch-hHHHHh
Q 046314 321 VVTT-RDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL-ALEVLG 391 (1137)
Q Consensus 321 IiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL-al~~lg 391 (1137)
|++| ....+..... .....++..+++.++..+.+...+......-+ .+....|++.++|.+- |+..+-
T Consensus 152 IL~tte~~kll~TI~-SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR~aln~Ld 221 (584)
T PRK14952 152 IFATTEPEKVLPTIR-SRTHHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPRDTLSVLD 221 (584)
T ss_pred EEEeCChHhhHHHHH-HhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 6555 4444443221 11238999999999998888776644332221 3455678888999874 444443
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=98.15 E-value=5e-05 Score=81.63 Aligned_cols=150 Identities=15% Similarity=0.256 Sum_probs=87.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLR 287 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 287 (1137)
...+.|+|..|+|||.||+++++.+..+-..++|+. .. ++... ...+.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-----~~------~~~~~-----------------~~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-----LA------ELLDR-----------------GPELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-----HH------HHHhh-----------------hHHHHHhhh
Confidence 367899999999999999999998765545566664 11 11110 011233333
Q ss_pred CCceEEEEeCCCCH---HHHH-HHhcccCC-CCCCCEEEEEeCChhh---------HHhhCCCCccEEEEccCCHHHHHH
Q 046314 288 RTKVFFVLDDVSKF---EQLK-YFVGWLHG-FCPGSRIVVTTRDKQV---------LRKHGVNDEYVYEVERLNEDEGLE 353 (1137)
Q Consensus 288 ~kr~LlVLDdv~~~---~~l~-~l~~~~~~-~~~gsrIIiTTR~~~v---------~~~~~~~~~~~~~v~~L~~~ea~~ 353 (1137)
+-. +||+||++.. .+++ .|...+.. ...|.+||+|++...- ...+... .++++++++.++-.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~~~ 173 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA--LVFQMRGLSDEDKLR 173 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC--eeeecCCCCHHHHHH
Confidence 333 6788999632 2332 23332221 1246788998875331 1112122 379999999999999
Q ss_pred HHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 354 LFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 354 Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
++..++......-+ ++...-+++++.|..-.+..+
T Consensus 174 il~~ka~~~~~~l~--~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 174 ALQLRASRRGLHLT--DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHH
Confidence 99866644322111 455566666666665444433
No 106
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=3.2e-05 Score=90.08 Aligned_cols=198 Identities=14% Similarity=0.107 Sum_probs=109.7
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc--CCceEEEeeccchhccCcChHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE--FEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
.|...++++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+.-. ++..-|..+..+ ..+.-.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~----~c~~c~ 85 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE----PCGECE 85 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC----CCCCCH
Confidence 45567889999999999999886432 24558899999999999999999877431 110000000000 000000
Q ss_pred HHHHHHHHHhCccccCCC-----CCccHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEe-
Q 046314 258 LHKQVVSLLLGERIEMGG-----PNIPAYTLERL-----RRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTT- 324 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~-----~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT- 324 (1137)
..+.+.......-...++ .+.+..+.+.+ .+++-++|+|+++.. +.++.|+..+....+.+.+|++|
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 011110000000000000 01111112222 245568899999753 45677777666555677766555
Q ss_pred CChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 325 RDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 325 R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
+...+..... .....+++++++.++..+.+...+-.....- ..+.+..+++.++|.+-
T Consensus 166 ~~~kl~~tl~-sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i--~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 166 ELHKIPATIA-SRCQRFNFKRIPLEEIQQQLQGICEAEGISV--DADALQLIGRKAQGSMR 223 (397)
T ss_pred ChHHhHHHHH-HHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 4344433211 1112689999999999888877653322111 15667888999999874
No 107
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=4e-06 Score=103.32 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=76.4
Q ss_pred CCcEEEecCCCcc-ccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceeccc
Q 046314 730 NITKLNLCDTAIE-EVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAH 808 (1137)
Q Consensus 730 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 808 (1137)
.++.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.....+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888887 678889999999999999999999999999999999999999999988889888877777777777
Q ss_pred Ccccc-ccCchh
Q 046314 809 GSTIS-QLPHLL 819 (1137)
Q Consensus 809 ~n~i~-~lp~~l 819 (1137)
+|.+. .+|..+
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 76665 455433
No 108
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=9e-08 Score=99.59 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=120.8
Q ss_pred CCcEEEecCCCcc--ccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccc--cccCCCCCccee
Q 046314 730 NITKLNLCDTAIE--EVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSW--SELGNLKSFQYI 805 (1137)
Q Consensus 730 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L 805 (1137)
.+++|||+.+.|+ .+-.-+..+.+|+.|.|.++++...+-..+.+-.+|+.|+|+.|+...... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5788888888776 333446788999999999999888888888899999999999998776443 346788999999
Q ss_pred cccCccccc--cCchhhccccccccccCCCCCCCEEeecCCC--CC--CcccccCCCCCCCEEEccCCCCCcCC---CCC
Q 046314 806 GAHGSTISQ--LPHLLSHLVSLHASLLSGLSSLNWLNLNNCA--LT--AIPEEIGCLPSLEWLELRGNNFESLP---SIP 876 (1137)
Q Consensus 806 ~l~~n~i~~--lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp---~~~ 876 (1137)
+++.+.+.. +...+.+ --++|..|+|+||. +. .+..-...+|+|..|||+.|..-.-. .+.
T Consensus 266 NlsWc~l~~~~Vtv~V~h----------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAH----------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred CchHhhccchhhhHHHhh----------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 998876652 1111111 12578888888872 22 23333466889999999986432212 456
Q ss_pred CcccccceeccccccccccCCC------CCCCcceeeccccccccc
Q 046314 877 ELPPSLKWLQASNCKRLQFLPE------IPSRPEELDASLLQKLSK 916 (1137)
Q Consensus 877 ~l~~~L~~L~l~~c~~L~~lp~------lp~~L~~L~~~~c~~L~~ 916 (1137)
+++ .|++|.++.|-.+ .|+ --|+|.+|++.+|-+=++
T Consensus 336 kf~-~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~ 378 (419)
T KOG2120|consen 336 KFN-YLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTT 378 (419)
T ss_pred hcc-hheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchH
Confidence 676 8899999988644 222 135788888888755433
No 109
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=2.9e-05 Score=93.20 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=107.7
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC---------------------Cce
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF---------------------EGN 239 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 239 (1137)
|...+++||-+.-++.+..++..+. -...+.++|+.|+||||+|+.+++.+.-.. ...
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 4566789999999999999886432 245678999999999999999998763211 111
Q ss_pred EEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCC
Q 046314 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPG 317 (1137)
Q Consensus 240 ~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 317 (1137)
+.+. .+...+...+ ++++..... .-..+++-++|+|+++.. +..+.|+..+......
T Consensus 91 ~ei~-----~~~~~~vd~i-r~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVD-----AASNTQVDAM-RELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEee-----ccccCCHHHH-HHHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 1111 0111111111 122221110 011345668999999864 3466777766655556
Q ss_pred CEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 318 SRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 318 srIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
..+|++|.+.+ +.... ......+++++++.++..+.+...+-......+ .+....+++.++|.+-
T Consensus 150 ~~fIL~t~d~~kil~tI-~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~--~~al~~la~~s~Gslr 215 (527)
T PRK14969 150 VKFILATTDPQKIPVTV-LSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD--ATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEEeCChhhCchhH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 66666665433 22111 111237999999999998888776533222111 4455778889999874
No 110
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=8e-05 Score=79.37 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=82.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLR 287 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 287 (1137)
.+.+.|||.+|+|||+|++.++.... ..++. . ..+...++.. +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-----~------~~~~~~~~~~--------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-----P------NEIGSDAANA--------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-----H------HHcchHHHHh--------------------hh
Confidence 45689999999999999999887532 22443 1 0111111111 11
Q ss_pred CCceEEEEeCCCC----HHHHHHHhcccCCCCCCCEEEEEeCCh---------hhHHhhCCCCccEEEEccCCHHHHHHH
Q 046314 288 RTKVFFVLDDVSK----FEQLKYFVGWLHGFCPGSRIVVTTRDK---------QVLRKHGVNDEYVYEVERLNEDEGLEL 354 (1137)
Q Consensus 288 ~kr~LlVLDdv~~----~~~l~~l~~~~~~~~~gsrIIiTTR~~---------~v~~~~~~~~~~~~~v~~L~~~ea~~L 354 (1137)
+ -+|++||++. .+.+-.+..... ..|..||+|++.. .+...+.... ++++++++.++-.++
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl--~~~l~~pd~e~~~~i 161 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT--VVEIGEPDDALLSQV 161 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCc--eeecCCCCHHHHHHH
Confidence 1 2788899954 233333333222 2467899988742 2333333333 899999999999999
Q ss_pred HHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 046314 355 FYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEV 389 (1137)
Q Consensus 355 f~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~ 389 (1137)
+.+.+-.....-+ +++..-+++.+.|..-++..
T Consensus 162 L~~~~~~~~~~l~--~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 162 IFKLFADRQLYVD--PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHHhhhhHHHHHH
Confidence 9988744322111 55666777777777665554
No 111
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=3.7e-08 Score=113.50 Aligned_cols=128 Identities=22% Similarity=0.190 Sum_probs=92.5
Q ss_pred CCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccc-cCCCCCcceeccc
Q 046314 730 NITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSE-LGNLKSFQYIGAH 808 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~l~ 808 (1137)
.|...+.+.|++..+-.++.-++.|+.|+|++|++...- .+..++.|++|+|+.|... .+|.. ...+ .|+.|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 456667777888888888888888999999988876543 6777888888888887643 33332 2233 38888888
Q ss_pred CccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc--cccCCCCCCCEEEccCCCCCcCC
Q 046314 809 GSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 809 ~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
+|.++++-. +.++.+|+.||+++|-|.+.. ..+..|..|+.|.|.||.+-.-|
T Consensus 241 nN~l~tL~g------------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 241 NNALTTLRG------------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ccHHHhhhh------------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 888776643 556788888889888777632 23566778888888888775544
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=8e-05 Score=90.08 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=112.6
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCc---eEEEeeccchhccCcChH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEG---NCFIENVREEIENGVGLV 256 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~s~~~~~~ 256 (1137)
.|...+++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+.-.... ..-+. ..+.-
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~--------~cg~c 89 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID--------LCGVG 89 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc--------cCccc
Confidence 45567889999999999999886442 35578899999999999999999976432210 00000 00000
Q ss_pred HHHHHHHHHHhCccccCC-----CCCccHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEe
Q 046314 257 HLHKQVVSLLLGERIEMG-----GPNIPAYTLERL-----RRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTT 324 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~-----~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT 324 (1137)
.-.+.+.......-...+ +.+.++.+.+.+ ..++-++|+|+++.. ...+.|+..+....+++.+|++|
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 001111110000000000 000111111111 234557899999764 34667776665555677766554
Q ss_pred -CChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHH
Q 046314 325 -RDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALE 388 (1137)
Q Consensus 325 -R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~ 388 (1137)
..+.+..... .....+++..++.++..+.+.+.+-+.....+ .+....|++.++|.+.-+.
T Consensus 170 te~~kll~tI~-SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~--~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 170 TEIRKVPVTVL-SRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE--DEALALIARAAEGSVRDGL 231 (598)
T ss_pred CChhhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 4444433321 12348999999999999999887644332221 4566788999999885443
No 113
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=3.8e-06 Score=69.30 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=44.8
Q ss_pred CCcEEEecCCCccccCc-cccCCCCCcEEecccccccccccccccCCCCCcEecccccc
Q 046314 730 NITKLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECL 787 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 787 (1137)
+|++|++++|.+..+|. .+..+++|++|++++|.+....|..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56778888888888875 46778888888888887776666777778888888877775
No 114
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.07 E-value=2.8e-05 Score=90.18 Aligned_cols=172 Identities=21% Similarity=0.321 Sum_probs=97.4
Q ss_pred CCCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhcc
Q 046314 183 SSKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIEN 251 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~ 251 (1137)
..+++.|++..++++.+.+.. +-..++-|.++|++|.|||++|++++++....|-. +. ..+
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~---v~-~~~---- 200 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR---VV-GSE---- 200 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE---ee-hHH----
Confidence 346788999999999887632 11345679999999999999999999987543211 11 111
Q ss_pred CcChHHHHHHHHHHHhCccccCCCCCccHH-HHHhhcCCceEEEEeCCCCH------------HH----HHHHhcccCCC
Q 046314 252 GVGLVHLHKQVVSLLLGERIEMGGPNIPAY-TLERLRRTKVFFVLDDVSKF------------EQ----LKYFVGWLHGF 314 (1137)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~-l~~~L~~kr~LlVLDdv~~~------------~~----l~~l~~~~~~~ 314 (1137)
+ .....+. ....+.. +...-...+.+|+||+++.. .. +..++..+..+
T Consensus 201 ------l----~~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 201 ------L----VQKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred ------H----hHhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 1 0000000 0000111 11112345789999999653 11 22233222222
Q ss_pred --CCCCEEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCC
Q 046314 315 --CPGSRIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGN 383 (1137)
Q Consensus 315 --~~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~ 383 (1137)
..+.+||.||.....+... ..+. .++++.++.++..++|..++.+..... .++ ..+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~--~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDR--IIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCce--EEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 2355677777654422211 2333 799999999999999998875443322 222 3445555554
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.06 E-value=7.2e-05 Score=79.41 Aligned_cols=156 Identities=15% Similarity=0.236 Sum_probs=87.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCc--eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEG--NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
...+.|+|..|.|||.|.+++++.+....+. ++++. .......+...+.. .....+++.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~--------~~~~~~~~~ 94 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRD--------GEIEEFKDR 94 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHT--------TSHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHc--------ccchhhhhh
Confidence 4457899999999999999999988765442 34443 23334444433332 123344566
Q ss_pred hcCCceEEEEeCCCCH---HHH-HHHhcccCCC-CCCCEEEEEeCChh---------hHHhhCCCCccEEEEccCCHHHH
Q 046314 286 LRRTKVFFVLDDVSKF---EQL-KYFVGWLHGF-CPGSRIVVTTRDKQ---------VLRKHGVNDEYVYEVERLNEDEG 351 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~---~~l-~~l~~~~~~~-~~gsrIIiTTR~~~---------v~~~~~~~~~~~~~v~~L~~~ea 351 (1137)
++.- =+|++||++.. ..+ +.+...+... ..|-+||+|++... +...+... .++++++++.++.
T Consensus 95 ~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G--l~~~l~~pd~~~r 171 (219)
T PF00308_consen 95 LRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG--LVVELQPPDDEDR 171 (219)
T ss_dssp HCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS--EEEEE----HHHH
T ss_pred hhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc--chhhcCCCCHHHH
Confidence 6643 36789999653 212 2222221111 35778999996542 11222222 3899999999999
Q ss_pred HHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhH
Q 046314 352 LELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 352 ~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal 387 (1137)
.+++.+.+......-+ ++++.-+++.+.+..-.|
T Consensus 172 ~~il~~~a~~~~~~l~--~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 172 RRILQKKAKERGIELP--EEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHHHTT--S---HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHhCCCCc--HHHHHHHHHhhcCCHHHH
Confidence 9999988854433222 455555666655544433
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=7.5e-05 Score=86.61 Aligned_cols=182 Identities=13% Similarity=0.157 Sum_probs=107.9
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc--------CCceEEEeeccchhcc
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE--------FEGNCFIENVREEIEN 251 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~~s~ 251 (1137)
.|..-++++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+++.+... |...++-.+ ...
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~----~~~ 86 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD----AAS 86 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec----ccc
Confidence 3556678999999999999988643 235688899999999999999998876431 222221110 011
Q ss_pred CcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEe-CChh
Q 046314 252 GVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTT-RDKQ 328 (1137)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT-R~~~ 328 (1137)
..+...+. +++.++.. .-..+++-++|+|+++.. ..++.+...+....+...+|++| +...
T Consensus 87 ~~~~~~i~-~l~~~~~~---------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 87 NNSVDDIR-NLIDQVRI---------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred CCCHHHHH-HHHHHHhh---------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 11122221 22221110 011234557999998653 34666655444334455666555 3333
Q ss_pred hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 329 VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 329 v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
+..... .....+++++++.++....+...+......-+ .+.+..+++.++|.+-
T Consensus 151 l~~~l~-sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~--~~al~~l~~~~~gdlr 204 (367)
T PRK14970 151 IIPTIL-SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE--DDALHIIAQKADGALR 204 (367)
T ss_pred CCHHHH-hcceeEecCCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhCCCCHH
Confidence 322211 11237999999999999888887654332211 4566778888888765
No 117
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.06 E-value=0.00013 Score=76.63 Aligned_cols=262 Identities=17% Similarity=0.249 Sum_probs=150.5
Q ss_pred CCCCCCCccchhhHHHHHHHhhccC---CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVG---FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~ 256 (1137)
.|...++|||.++-.+.|.-.+... ....-.|.++|++|.||||||.-+++.+...+.... ..-+
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-----------Gp~l- 88 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS-----------GPAL- 88 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc-----------cccc-
Confidence 3556688999999888887777532 234678999999999999999999998866553210 0000
Q ss_pred HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHHH-HHHH-hcccC--------CCCCCCEE------
Q 046314 257 HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQ-LKYF-VGWLH--------GFCPGSRI------ 320 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-l~~l-~~~~~--------~~~~gsrI------ 320 (1137)
.-..+++.- ..-|+... ++.+|.++.... ++++ -+... ..|+++|.
T Consensus 89 eK~gDlaai-----------------Lt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 89 EKPGDLAAI-----------------LTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred cChhhHHHH-----------------HhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 001111111 11122222 345677755322 2221 11111 12455553
Q ss_pred -----EEEeCChhhH----HhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHh
Q 046314 321 -----VVTTRDKQVL----RKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLG 391 (1137)
Q Consensus 321 -----IiTTR~~~v~----~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg 391 (1137)
=-|||.-.+. ...|+ +..++.-+.+|-.+...+.|..-...-+ ++-+.+|+++..|-|--..-+-
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi----~~rlefY~~~eL~~Iv~r~a~~l~i~i~--~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGI----IQRLEFYTVEELEEIVKRSAKILGIEID--EEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred CeeEeeeccccccccchhHHhcCC----eeeeecCCHHHHHHHHHHHHHHhCCCCC--hHHHHHHHHhccCCcHHHHHHH
Confidence 3588865432 23343 6788889999999999888743222222 5667899999999995433332
Q ss_pred hhhccCCHHHHHHHHHH--HhccCCcccHHHHHHHhhccCChhhHhHhhhcccccCC--cCHHHHHHHHhhcCCchhHHH
Q 046314 392 SSLHQKSKLDWENVLDN--LKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFFKG--ECKDRVLMLLHDRQYNVTHVL 467 (1137)
Q Consensus 392 ~~L~~~~~~~w~~~l~~--l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~~~~~~~~l 467 (1137)
+..+ ++..+... +..... +...+.|.+--.+|+...++.+..+.-.+.+ ...+.+...+..+....++.+
T Consensus 225 rRVR-----Dfa~V~~~~~I~~~ia-~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~ 298 (332)
T COG2255 225 RRVR-----DFAQVKGDGDIDRDIA-DKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVI 298 (332)
T ss_pred HHHH-----HHHHHhcCCcccHHHH-HHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHH
Confidence 2222 11111100 000000 2234445555567788888877777666643 455777777666555556666
Q ss_pred H-HHHhccCceee-CCeE
Q 046314 468 S-ILIDKSLITEH-NNRL 483 (1137)
Q Consensus 468 ~-~L~~~sLi~~~-~~~~ 483 (1137)
+ -|+..++|+.. .|++
T Consensus 299 EPyLiq~gfi~RTpRGR~ 316 (332)
T COG2255 299 EPYLIQQGFIQRTPRGRI 316 (332)
T ss_pred hHHHHHhchhhhCCCcce
Confidence 5 48899999876 4443
No 118
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.05 E-value=5.9e-05 Score=85.71 Aligned_cols=153 Identities=16% Similarity=0.226 Sum_probs=89.5
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLH 259 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~ 259 (1137)
.|...++++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....+ ..+. .+. .....+.
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-----~~~-~~~~~i~ 85 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-----GSD-CRIDFVR 85 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-----cCc-ccHHHHH
Confidence 3556688999999999999988643 2356777899999999999999998764322 2222 111 1122221
Q ss_pred HHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH---HHHHHHhcccCCCCCCCEEEEEeCChhhHHhhCCC
Q 046314 260 KQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF---EQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKHGVN 336 (1137)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~ 336 (1137)
..+ ..... ...+...+-++|+|+++.. +..+.+...+.....+.++|+||.....+...-..
T Consensus 86 ~~l-~~~~~--------------~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 86 NRL-TRFAS--------------TVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHH-HHHHH--------------hhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 111 11110 0001234557889999754 22333333344445678899988754321111011
Q ss_pred CccEEEEccCCHHHHHHHHHh
Q 046314 337 DEYVYEVERLNEDEGLELFYK 357 (1137)
Q Consensus 337 ~~~~~~v~~L~~~ea~~Lf~~ 357 (1137)
....+.++..+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 122678888888888776654
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.0002 Score=86.81 Aligned_cols=198 Identities=14% Similarity=0.103 Sum_probs=108.1
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc--CCceEEEeeccchhccCcChHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE--FEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
.|...+++||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.-. .+...|..+..+ ..+.-.
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~----~Cg~C~ 85 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE----PCGECE 85 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC----CCccCH
Confidence 4556788999999999999988633 224568899999999999999999876321 110111110000 000000
Q ss_pred HHHHHHHHHhCccccCCC-----CCccHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEe-
Q 046314 258 LHKQVVSLLLGERIEMGG-----PNIPAYTLERL-----RRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTT- 324 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~-----~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT- 324 (1137)
..+.+...-...-...++ .+.+..+.+.+ .+++-++|+|+++.. ...+.|+..+....+.+.+|++|
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 011110000000000000 01111111222 234557899999764 34667777666544556655555
Q ss_pred CChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 325 RDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 325 R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
+...+..... .....+++.+++.++....+...+-.....- ..+.+..+++.++|..-
T Consensus 166 ~~~kLl~TI~-SRc~~vef~~l~~~ei~~~L~~i~~~egi~I--~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 166 ELHKIPATIA-SRCQRFNFKRIPLDEIQSQLQMICRAEGIQI--DADALQLIARKAQGSMR 223 (620)
T ss_pred ChhhhhHHHH-hhceEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHH
Confidence 4444433221 1223899999999998888876553322111 14566788999999664
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00015 Score=85.50 Aligned_cols=187 Identities=15% Similarity=0.210 Sum_probs=109.0
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC---C----ceE------------
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF---E----GNC------------ 240 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---~----~~~------------ 240 (1137)
.|...++++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- + +.|
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 34566889999999999999886432 246688999999999999999998763210 0 000
Q ss_pred -EEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCC
Q 046314 241 -FIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPG 317 (1137)
Q Consensus 241 -~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 317 (1137)
|+. +. .....+...+. ++...+. ......++-++|+|+++.. +..+.|+..+....++
T Consensus 91 d~~~-i~--g~~~~gid~ir-~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 91 DVLE-ID--GASHRGIEDIR-QINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred ceEE-ee--ccccCCHHHHH-HHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 100 00 00011111111 1111110 0011245668899998753 3456666665554456
Q ss_pred CEEEEEeCC-hhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch-hHHH
Q 046314 318 SRIVVTTRD-KQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL-ALEV 389 (1137)
Q Consensus 318 srIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL-al~~ 389 (1137)
..+|++|.. ..+..... .....+++++++.++..+.+...+-+....-+ .+.+..++++++|.+- |+..
T Consensus 152 ~~~Il~t~~~~kl~~tI~-sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~--~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 152 VKFFLATTEIHKIPGTIL-SRCQKMHLKRIPEETIIDKLALIAKQEGIETS--REALLPIARAAQGSLRDAESL 222 (451)
T ss_pred ceEEEEeCChHhcchHHH-HhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 667666643 33322211 11237999999999998888776543221111 4566788999999764 4333
No 121
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00011 Score=91.82 Aligned_cols=181 Identities=12% Similarity=0.094 Sum_probs=108.3
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc--CC--------------------
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE--FE-------------------- 237 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~-------------------- 237 (1137)
.|...+++||.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+.-. ..
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 34566789999999999999986432 23567899999999999999999876311 10
Q ss_pred -ceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCC
Q 046314 238 -GNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGF 314 (1137)
Q Consensus 238 -~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~ 314 (1137)
.++.+. .....++..+. ++...+. ..-..+++-++|||+++.. +..+.|+..+...
T Consensus 89 ~dv~eid-----aas~~~Vd~iR-~l~~~~~---------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 89 LDVTEID-----AASHGGVDDAR-ELRERAF---------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred CcEEEec-----ccccCCHHHHH-HHHHHHH---------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 011110 00111122111 1111110 0112345557889999764 4466777766655
Q ss_pred CCCCEEEEEeCC-hhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 315 CPGSRIVVTTRD-KQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 315 ~~gsrIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
...+.+|++|.+ ..+..... .....|++..++.++..+++.+.+-......+ .+....|++.++|.+.
T Consensus 148 P~~~~fIl~tt~~~kLl~TIr-SRc~~v~F~~l~~~~l~~~L~~il~~EGv~id--~eal~lLa~~sgGdlR 216 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIR-SRTHHYPFRLVPPEVMRGYLERICAQEGVPVE--PGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHH-hheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 566676665544 33443221 12338999999999988888776533222111 3455678889999874
No 122
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00015 Score=88.05 Aligned_cols=191 Identities=14% Similarity=0.169 Sum_probs=109.0
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc-cCCc---eEEEe--------eccc
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN-EFEG---NCFIE--------NVRE 247 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~---~~~~~--------~~~~ 247 (1137)
.|....+++|.+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-. .... .|-.+ ++-+
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 4556678999999999999988643 23566789999999999999999986532 1100 00000 0000
Q ss_pred -hhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEe
Q 046314 248 -EIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTT 324 (1137)
Q Consensus 248 -~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT 324 (1137)
......+... .+++...+. ..-..+++-++|+|+++.. ..+..|+..+....+...+|++|
T Consensus 92 idaasn~~vd~-IReLie~~~---------------~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 92 MDAASNNGVDE-IRELIENVK---------------NLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred EeccccCCHHH-HHHHHHHHH---------------hchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 0000011111 111111110 0012255668899999753 45777776665544555555444
Q ss_pred -CChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch-hHHHH
Q 046314 325 -RDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL-ALEVL 390 (1137)
Q Consensus 325 -R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL-al~~l 390 (1137)
+...+.... ......+++.+++.++..+.+...+-......+ .+.+..+++.++|.+- |+..+
T Consensus 156 te~~KLl~TI-~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id--~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 156 TEVHKIPLTI-LSRVQRFNFRRISEDEIVSRLEFILEKENISYE--KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred CChhhhhHHH-HhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 444443322 112238999999999999888776533221111 3456788999988764 44433
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00015 Score=88.70 Aligned_cols=198 Identities=17% Similarity=0.166 Sum_probs=112.1
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLH 259 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~ 259 (1137)
.|...+++||.+.-++.|..++..+. -...+.++|..|+||||+|+.+++.+.-..... .....+.-...
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~---------~~~~c~~c~~c 80 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP---------KGRPCGTCEMC 80 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccCHHH
Confidence 34556789999999999988886442 245678999999999999999998763211000 00000001111
Q ss_pred HHHHHHHhCccccCCC--C---CccHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCCh
Q 046314 260 KQVVSLLLGERIEMGG--P---NIPAYTLERL-----RRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDK 327 (1137)
Q Consensus 260 ~~ll~~l~~~~~~~~~--~---~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 327 (1137)
+.+...........+. . +.++.+.+.+ ..++-++|+|+++.. +..+.|+..+....+...+|++|.+.
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1111110000000000 0 0011111111 244568999999753 55777776665555666776666443
Q ss_pred -hhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 328 -QVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 328 -~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
.+..... .....+++..++.++..+.+...+......-+ .+.+..+++.++|.+..+...
T Consensus 161 ~kll~tI~-SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~--~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 161 HKVPATIL-SRCQRFDFHRHSVADMAAHLRKIAAAEGINLE--PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhhhHHHH-hccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 3333221 12237899999999998888877644332211 456778899999988654433
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.0002 Score=84.88 Aligned_cols=184 Identities=13% Similarity=0.103 Sum_probs=107.5
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc---C-C-----------------c
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE---F-E-----------------G 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F-~-----------------~ 238 (1137)
.|....+++|-+.-++.+...+..+. -.+...++|+.|+||||+|+.++..+... . + .
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 34556789999999999999986432 24567789999999999999999876311 0 0 0
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 316 (1137)
...+. .+...+...+ +.+...+. ..-..+++-++|+|+++.. +..+.|+..+....+
T Consensus 90 ~~eid-----aas~~gvd~i-r~I~~~~~---------------~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~ 148 (486)
T PRK14953 90 LIEID-----AASNRGIDDI-RALRDAVS---------------YTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPP 148 (486)
T ss_pred EEEEe-----CccCCCHHHH-HHHHHHHH---------------hCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCC
Confidence 11110 0001111111 11111100 0011345668999999754 346666666655445
Q ss_pred CCEEEEEe-CChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHH
Q 046314 317 GSRIVVTT-RDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALE 388 (1137)
Q Consensus 317 gsrIIiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~ 388 (1137)
...+|++| +...+..... .....+++.+++.++..+.+...+-......+ .+.+..+++.++|.+..+.
T Consensus 149 ~~v~Il~tt~~~kl~~tI~-SRc~~i~f~~ls~~el~~~L~~i~k~egi~id--~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTIL-SRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE--EKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CeEEEEEECCHHHHHHHHH-HhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 55665555 4333332211 11237999999999998888876643322211 3556778888999775443
No 125
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.99 E-value=5.5e-06 Score=68.38 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCcc
Q 046314 752 TNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGST 811 (1137)
Q Consensus 752 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 811 (1137)
++|++|++++|++....+..|.++++|++|++++|......+..|.++++|+.|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 355666666665444444455555555555555555444434444444444444444443
No 126
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00018 Score=85.29 Aligned_cols=188 Identities=12% Similarity=0.107 Sum_probs=111.5
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc-cCCc--eEEEe------------e
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN-EFEG--NCFIE------------N 244 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~--~~~~~------------~ 244 (1137)
.|...+++||-+.-.+.|...+..+. -.++..++|+.|+||||+|+.+++.+-. .... .|..+ +
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 34566889999999999999886442 3456689999999999999999987631 1100 01000 0
Q ss_pred ccc-hhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEE
Q 046314 245 VRE-EIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIV 321 (1137)
Q Consensus 245 ~~~-~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrII 321 (1137)
+-+ ..+...+...+...+ .... ..-..+++-++|+|+++.. +..+.|+..+....+.+++|
T Consensus 88 v~eldaas~~gId~IReli-e~~~---------------~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 88 IIEMDAASNRGIDDIRELI-EQTK---------------YKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred EEEeccccccCHHHHHHHH-HHHh---------------hCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 000 001111222222211 1100 0001134568899999764 44677777666556677777
Q ss_pred EEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhH
Q 046314 322 VTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 322 iTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal 387 (1137)
++|.+.. +..... .....+++.+++.++..+.+...+-.....-+ .+.+..+++.++|.+--+
T Consensus 152 L~ttd~~kL~~tI~-SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~--~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 152 LATTDPLKLPATIL-SRTQHFRFKQIPQNSIISHLKTILEKEGVSYE--PEALEILARSGNGSLRDT 215 (535)
T ss_pred EEECChhhCchHHH-hhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHH
Confidence 7776643 221111 12338999999999999888776543322221 456678899999988433
No 127
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.98 E-value=0.00015 Score=88.81 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=41.0
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
|...++++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45567899999999998877642 345679999999999999999998755
No 128
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=2.2e-06 Score=101.06 Aligned_cols=168 Identities=20% Similarity=0.172 Sum_probs=91.0
Q ss_pred CCceEEEEecCCCCCCCC-CCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeecc
Q 046314 591 EKLKYLHLHKYPLRTLPE-NFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLW 669 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~-~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~ 669 (1137)
.+|..|++.+|.++.+.. .-.+.+|++|+|++|.|.++.. ...+. .|+.|++++|. +..++.+..+++|+.++++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~--~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLT--LLKELNLSGNL-ISDISGLESLKSLKLLDLS 170 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhcc--chhhheeccCc-chhccCCccchhhhcccCC
Confidence 367777777777776666 3467777777777777776633 22333 57777777776 3455556667777777777
Q ss_pred CCCCccccC-ccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccC--CccCCCCCcccC-CCcEEEecCCCccccC
Q 046314 670 NCTNLAWVP-SSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSF--CVNLTEFPRISG-NITKLNLCDTAIEEVP 745 (1137)
Q Consensus 670 ~~~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~--c~~l~~~~~~~~-~L~~L~L~~~~i~~lp 745 (1137)
+|.....-+ . ...+.+|+.+.+.+|.... +...-.+..+..+++.. +..+..++.... .|+.+++.+|.+..++
T Consensus 171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~ 248 (414)
T KOG0531|consen 171 YNRIVDIENDE-LSELISLEELDLGGNSIRE-IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP 248 (414)
T ss_pred cchhhhhhhhh-hhhccchHHHhccCCchhc-ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccc
Confidence 765443322 1 4566666666666643221 11100111111111111 111222221111 2667777777777766
Q ss_pred ccccCCCCCcEEecccccc
Q 046314 746 SSVECLTNLEYLYINRCKR 764 (1137)
Q Consensus 746 ~~i~~l~~L~~L~L~~~~~ 764 (1137)
..+..+..+..|++.+|+.
T Consensus 249 ~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 249 EGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccccccccccccchhhccc
Confidence 5566666677777666654
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00014 Score=85.56 Aligned_cols=164 Identities=14% Similarity=0.186 Sum_probs=96.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCC--ceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFE--GNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL 286 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 286 (1137)
.-+.|+|..|.|||+|++++++.+..... .++++. ...+...+...+.... ...+.+++.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~------~~~~~~~~~~ 204 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH------KEIEQFKNEI 204 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh------hHHHHHHHHh
Confidence 45889999999999999999997754332 233432 2334444444432210 1122334444
Q ss_pred cCCceEEEEeCCCCH----HHHHHHhcccCC-CCCCCEEEEEeCChh-h--------HHhhCCCCccEEEEccCCHHHHH
Q 046314 287 RRTKVFFVLDDVSKF----EQLKYFVGWLHG-FCPGSRIVVTTRDKQ-V--------LRKHGVNDEYVYEVERLNEDEGL 352 (1137)
Q Consensus 287 ~~kr~LlVLDdv~~~----~~l~~l~~~~~~-~~~gsrIIiTTR~~~-v--------~~~~~~~~~~~~~v~~L~~~ea~ 352 (1137)
+ +.-+||+||+... ...+.+...+.. ...|..||+|+.... . ...+.. ..++++++++.++-.
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~--Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNM--GLSIAIQKLDNKTAT 281 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhC--CceeccCCcCHHHHH
Confidence 4 3447889999543 122333222211 124557888875432 1 122222 237899999999999
Q ss_pred HHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhh
Q 046314 353 ELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGS 392 (1137)
Q Consensus 353 ~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~ 392 (1137)
+++.+++-.......-.++...-|++.++|.|-.+.-+..
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9999887432211112256778889999999876655543
No 130
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.92 E-value=0.00011 Score=92.51 Aligned_cols=170 Identities=13% Similarity=0.177 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC----
Q 046314 161 KLVQVIVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF---- 236 (1137)
Q Consensus 161 ~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---- 236 (1137)
..+++...++..+. .+..-++++||+.+++++.+.|... ...-+.++|.+|+|||++|+.+++++...-
T Consensus 163 ~~l~~~~~~l~~~~-----r~~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~ 235 (731)
T TIGR02639 163 DALEKYTVDLTEKA-----KNGKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPEN 235 (731)
T ss_pred hHHHHHhhhHHHHH-----hcCCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh
Confidence 35556565655544 2334568999999999999988643 234467999999999999999999874431
Q ss_pred --CceEEEeeccchhccC---cChHHHHHHHHHHHhCccccCCCCCccHHHHHhh-cCCceEEEEeCCCCH---------
Q 046314 237 --EGNCFIENVREEIENG---VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL-RRTKVFFVLDDVSKF--------- 301 (1137)
Q Consensus 237 --~~~~~~~~~~~~~s~~---~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--------- 301 (1137)
...+|..+........ .....-.+.+ .+.+ ..++++|++|+++..
T Consensus 236 l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i--------------------~~~~~~~~~~ILfiDEih~l~~~g~~~~~ 295 (731)
T TIGR02639 236 LKNAKIYSLDMGSLLAGTKYRGDFEERLKAV--------------------VSEIEKEPNAILFIDEIHTIVGAGATSGG 295 (731)
T ss_pred hcCCeEEEecHHHHhhhccccchHHHHHHHH--------------------HHHHhccCCeEEEEecHHHHhccCCCCCc
Confidence 2334433222211000 0111111111 1112 245789999998632
Q ss_pred --HHHHHHhcccCCCCCCCEEEEEeCChhhHHhh----C-CCCccEEEEccCCHHHHHHHHHhhc
Q 046314 302 --EQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKH----G-VNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 302 --~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~----~-~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
+..+.|.+.+. . ..-++|-+|......... . ......+++++++.++..+++....
T Consensus 296 ~~~~~~~L~~~l~-~-g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 296 SMDASNLLKPALS-S-GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred cHHHHHHHHHHHh-C-CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 12223333332 1 123445444432210000 0 0112379999999999999998654
No 131
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=9.7e-07 Score=102.16 Aligned_cols=126 Identities=22% Similarity=0.216 Sum_probs=76.7
Q ss_pred ceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCC
Q 046314 639 KLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFC 718 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c 718 (1137)
.|.+.+.++|.+...-..+.-++.|+.|||+.|+....- .+..+++|++|||+.|. +..+|. +...+|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~---------l~~~gc 232 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQ---------LSMVGC 232 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccc---------cchhhh
Confidence 466666666664332223555667777777776543322 56667777777776642 333332 222222
Q ss_pred ccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccc-cccccCCCCCcEeccccccc
Q 046314 719 VNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRV-STSICKLKSLIWLCLNECLN 788 (1137)
Q Consensus 719 ~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~~ 788 (1137)
.|..|.+++|.++++- ++.+|.+|+.||+++|-+.+.- -.-+..|..|+.|+|.||+.
T Consensus 233 -----------~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 233 -----------KLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -----------hheeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4667777778777774 4788888888888888665421 11244567788888888764
No 132
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.1e-05 Score=60.99 Aligned_cols=42 Identities=33% Similarity=0.565 Sum_probs=34.6
Q ss_pred CCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCCCC
Q 046314 834 SSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLPSI 875 (1137)
Q Consensus 834 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 875 (1137)
++|++|++++|+++++|..+.++++|+.|++++|+++.+|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 478999999999999988899999999999999999876543
No 133
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00036 Score=85.15 Aligned_cols=197 Identities=17% Similarity=0.119 Sum_probs=109.7
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC-CceEEEeeccchhccCcChHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF-EGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
.|....+++|.+.-++.|..++..+. -...+.++|..|+||||+|+.+++.+-... +... ....+.-..
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~---------~~~Cg~C~~ 80 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT---------PEPCGKCEL 80 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC---------CCCCcccHH
Confidence 34556789999999999999887442 235678999999999999999999764321 1000 000010111
Q ss_pred HHHHHHHHhCccccCC--CCCccHHHHH---hh-----cCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCC
Q 046314 259 HKQVVSLLLGERIEMG--GPNIPAYTLE---RL-----RRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRD 326 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~~~--~~~~~~~l~~---~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 326 (1137)
.+.+...........+ ....++.+++ .+ .+++-++|+|+++.. +..+.|+..+........+|++|.+
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 1111111000000000 0001111111 11 244558899999864 4577777766644455555555544
Q ss_pred h-hhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 046314 327 K-QVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEV 389 (1137)
Q Consensus 327 ~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~ 389 (1137)
. .+..... .....+++..++.++..+.+.+.+......-+ .+.+..++++++|.+..+..
T Consensus 161 ~~~llpTIr-SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is--~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 161 PQRVLPTII-SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE--PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hhhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 3 3333221 12237889999999988888776543221111 34567889999998754433
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00034 Score=84.29 Aligned_cols=188 Identities=13% Similarity=0.124 Sum_probs=110.0
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-----CCc-eEEEe---------e
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-----FEG-NCFIE---------N 244 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~---------~ 244 (1137)
.|...++++|-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .++ .|.-+ +
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d 89 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD 89 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC
Confidence 3556688999999999999998643 235678899999999999999999876321 110 00000 0
Q ss_pred ccc-hhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEE
Q 046314 245 VRE-EIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIV 321 (1137)
Q Consensus 245 ~~~-~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrII 321 (1137)
+.+ ......++..+. ++...+. ..-..+++-++|+|+++.. +..+.|+..+....+...+|
T Consensus 90 v~~idgas~~~vddIr-~l~e~~~---------------~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI 153 (563)
T PRK06647 90 VIEIDGASNTSVQDVR-QIKEEIM---------------FPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFI 153 (563)
T ss_pred eEEecCcccCCHHHHH-HHHHHHH---------------hchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEE
Confidence 000 000001111111 1111000 0012345668899999764 44777777666555666666
Q ss_pred EEeCC-hhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhH
Q 046314 322 VTTRD-KQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 322 iTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal 387 (1137)
.+|.+ ..+..... .....++..+++.++..+.+...+......-+ .+.+..+++.++|.+-.+
T Consensus 154 ~~tte~~kL~~tI~-SRc~~~~f~~l~~~el~~~L~~i~~~egi~id--~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 154 FATTEVHKLPATIK-SRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE--DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred EecCChHHhHHHHH-HhceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 66544 33332221 11237999999999998888877644332222 455677888899987433
No 135
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.88 E-value=0.0006 Score=72.54 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=114.1
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh--ccCCceEEEeeccchhccCcChH-
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS--NEFEGNCFIENVREEIENGVGLV- 256 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~~~s~~~~~~- 256 (1137)
.|...++++|.+..++.|...+.. ........+|++|.|||+-|++++.++- +-|+.++.-.|. +...|..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna----SderGisv 104 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA----SDERGISV 104 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc----cccccccc
Confidence 456678899999999999998864 4677889999999999999999998763 345554432222 2222222
Q ss_pred -HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChhhHHhh
Q 046314 257 -HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKH 333 (1137)
Q Consensus 257 -~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 333 (1137)
+....-++++........ ..-...--.+|||+++.. +.|.+|......+...+|.|..+-.-......
T Consensus 105 vr~Kik~fakl~~~~~~~~---------~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 105 VREKIKNFAKLTVLLKRSD---------GYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhhhcCHHHHhhcccccc---------CCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 111111112111110000 000111137889999874 45888877777666777755443332211111
Q ss_pred CCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc
Q 046314 334 GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 334 ~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P 384 (1137)
-+....-|.-++|.+++..+-+...+-+....-+ .+..+.|+++++|--
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDL 224 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcH
Confidence 1111226889999999999888888765544333 566688899998854
No 136
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.88 E-value=0.00034 Score=82.47 Aligned_cols=158 Identities=19% Similarity=0.331 Sum_probs=90.8
Q ss_pred CCCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccC-----CceEEEeecc
Q 046314 183 SSKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF-----EGNCFIENVR 246 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~~ 246 (1137)
.-.++.|.+..++++.+.+.. +-...+-|.++|++|.|||++|+++++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 346688899999988876532 122356789999999999999999999876542 2334442 21
Q ss_pred c-hh-ccCcC-hHHHHHHHHHHHhCccccCCCCCccHHHHHh-hcCCceEEEEeCCCCHH---------H-----HHHHh
Q 046314 247 E-EI-ENGVG-LVHLHKQVVSLLLGERIEMGGPNIPAYTLER-LRRTKVFFVLDDVSKFE---------Q-----LKYFV 308 (1137)
Q Consensus 247 ~-~~-s~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----l~~l~ 308 (1137)
. .. +...+ .....+.++. ..++. ..+++++|+||+++..- + +..|+
T Consensus 259 ~~eLl~kyvGete~~ir~iF~----------------~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIFQ----------------RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred chhhcccccchHHHHHHHHHH----------------HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 1 00 00000 0011111111 11111 23578999999996421 1 23344
Q ss_pred cccCCCC--CCCEEEEEeCChhhHHh-----hCCCCccEEEEccCCHHHHHHHHHhhc
Q 046314 309 GWLHGFC--PGSRIVVTTRDKQVLRK-----HGVNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 309 ~~~~~~~--~gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
..+.... .+..||.||-....+.. ...+. .++++..+.++..++|..+.
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~--~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDV--KIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccce--EEEeCCCCHHHHHHHHHHHh
Confidence 4333222 34445556654433221 12333 69999999999999999886
No 137
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.88 E-value=0.00013 Score=80.22 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=80.2
Q ss_pred CccchhhHHHHHHHhhc----------cC---CCCeEEEEEEccCCChhhHHHHHHHHHhhccC--CceEEEeeccchhc
Q 046314 186 GLVGLNSRIECIKSLLC----------VG---FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF--EGNCFIENVREEIE 250 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~----------~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~s 250 (1137)
.++|.+...++|.+... .+ .+....+.++|++|+||||+|+.+++.+...- ....++. +.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-----~~ 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-----VE 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-----ec
Confidence 46777666655543321 11 23456788999999999999999998753211 1112221 10
Q ss_pred cCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhc-CCceEEEEeCCCC----------HHHHHHHhcccCCCCCCCE
Q 046314 251 NGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLR-RTKVFFVLDDVSK----------FEQLKYFVGWLHGFCPGSR 319 (1137)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~----------~~~l~~l~~~~~~~~~gsr 319 (1137)
. ..+ .....++. ...+++.+. ...-+|++|+++. .++++.++...........
T Consensus 82 ~----~~l----~~~~~g~~--------~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~ 145 (261)
T TIGR02881 82 R----ADL----VGEYIGHT--------AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV 145 (261)
T ss_pred H----HHh----hhhhccch--------HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence 0 011 11111000 001111111 1134889999975 2346666665544333345
Q ss_pred EEEEeCChhhHH------hh--CCCCccEEEEccCCHHHHHHHHHhhccc
Q 046314 320 IVVTTRDKQVLR------KH--GVNDEYVYEVERLNEDEGLELFYKYAFR 361 (1137)
Q Consensus 320 IIiTTR~~~v~~------~~--~~~~~~~~~v~~L~~~ea~~Lf~~~a~~ 361 (1137)
+|+++.....-. .. ... ..+++++++.+|-.+++.+.+..
T Consensus 146 vila~~~~~~~~~~~~~p~L~sRf~--~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSRFP--ISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhccc--eEEEECCCCHHHHHHHHHHHHHH
Confidence 556654332211 00 122 26899999999999999877643
No 138
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.86 E-value=0.00048 Score=75.29 Aligned_cols=169 Identities=17% Similarity=0.235 Sum_probs=107.3
Q ss_pred CCCCccchhhHHHHHHHhhccCCCC-eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHH
Q 046314 183 SSKGLVGLNSRIECIKSLLCVGFPD-VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQ 261 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ 261 (1137)
..+.+.+|+.++..+.+++...+.. +..|.|.|.+|.|||.+.+++++... ...+|+. +-+.+....+..+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n-----~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN-----CVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeee-----hHHhccHHHHHHH
Confidence 4567899999999999999755543 45669999999999999999998762 2346776 5567888999999
Q ss_pred HHHHHh-Ccccc--CCC--CCc---cHHHHH--hhc--CCceEEEEeCCCCHHHHH-----HHhcccCCCCCCCEEEEEe
Q 046314 262 VVSLLL-GERIE--MGG--PNI---PAYTLE--RLR--RTKVFFVLDDVSKFEQLK-----YFVGWLHGFCPGSRIVVTT 324 (1137)
Q Consensus 262 ll~~l~-~~~~~--~~~--~~~---~~~l~~--~L~--~kr~LlVLDdv~~~~~l~-----~l~~~~~~~~~gsrIIiTT 324 (1137)
++.+.. ..+.. ..+ ... +..+++ ... ++.++||||+++...+.+ .+.....-.....-.|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 998884 22221 111 111 111222 111 468999999997765522 2222111111222334444
Q ss_pred CChh---hHHhhCCCCccEEEEccCCHHHHHHHHHhhc
Q 046314 325 RDKQ---VLRKHGVNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 325 R~~~---v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
-... -....|.....++..+.-+.+|..+++.+.-
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 3322 2222455554578888899999999987654
No 139
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.00042 Score=77.70 Aligned_cols=209 Identities=14% Similarity=0.183 Sum_probs=125.9
Q ss_pred CCCCCCCccchhhHHHHHHHhhcc--CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCc--eEEEeeccchhccCcCh
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCV--GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEG--NCFIENVREEIENGVGL 255 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~s~~~~~ 255 (1137)
....+..++||+.++..+.+++.. +.+..+.+-|.|.+|.|||.+...++.+....... .+++. ...-...
T Consensus 145 ~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in-----c~sl~~~ 219 (529)
T KOG2227|consen 145 NTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN-----CTSLTEA 219 (529)
T ss_pred hcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe-----eccccch
Confidence 345678899999999999999863 44567889999999999999999999987655543 34443 2222345
Q ss_pred HHHHHHHHHHHhCcc-ccCCCCCccHHHHHhhcCC--ceEEEEeCCCCHHH--HHHHhcccCCCC-CCCEEEEEeCChh-
Q 046314 256 VHLHKQVVSLLLGER-IEMGGPNIPAYTLERLRRT--KVFFVLDDVSKFEQ--LKYFVGWLHGFC-PGSRIVVTTRDKQ- 328 (1137)
Q Consensus 256 ~~l~~~ll~~l~~~~-~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~--l~~l~~~~~~~~-~gsrIIiTTR~~~- 328 (1137)
..+...+...+.... ....+.+..+.+.....+. .+|+|+|.++.... -+.+...+.|.. +++|+|+.--...
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhh
Confidence 567777777764332 2222333444445555443 58999999866432 122333333333 6777765422111
Q ss_pred -----hHHhhCC---CCccEEEEccCCHHHHHHHHHhhcccCCCC---ChhHHHHHHHHHHHhCCCchhHHHHhhh
Q 046314 329 -----VLRKHGV---NDEYVYEVERLNEDEGLELFYKYAFRQSHC---PEHLTALSKKAVRYAEGNPLALEVLGSS 393 (1137)
Q Consensus 329 -----v~~~~~~---~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~---~~~~~~l~~~iv~~~~G~PLal~~lg~~ 393 (1137)
.+..... -....+..++-+.++-.+++..+.-..... +...+-.|++++...|.+--|+.+.-+.
T Consensus 300 DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 300 DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 1111111 122378889999999999999886332211 1233344555555555555555555443
No 140
>PRK06620 hypothetical protein; Validated
Probab=97.84 E-value=0.00022 Score=75.38 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=75.3
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcC
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRR 288 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 288 (1137)
+.+.|||++|+|||+|++++++.... .++.. .... .+..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~-------~~~~---------------------------~~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD-------IFFN---------------------------EEILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcch-------hhhc---------------------------hhHHh-
Confidence 66899999999999999997765421 22210 0000 00111
Q ss_pred CceEEEEeCCCCHHH--HHHHhcccCCCCCCCEEEEEeCChhh-------HHhhCCCCccEEEEccCCHHHHHHHHHhhc
Q 046314 289 TKVFFVLDDVSKFEQ--LKYFVGWLHGFCPGSRIVVTTRDKQV-------LRKHGVNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 289 kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~v-------~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
..-++++||++...+ +-.+...+. ..|..||+|++.... ...+... .+++++++++++-.+++.+.+
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHHH
Confidence 234678899975433 222222221 256789999875432 1222222 279999999999888887776
Q ss_pred ccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 360 FRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 360 ~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
......-+ +++.+-+++++.|.--
T Consensus 161 ~~~~l~l~--~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 161 SISSVTIS--RQIIDFLLVNLPREYS 184 (214)
T ss_pred HHcCCCCC--HHHHHHHHHHccCCHH
Confidence 42211111 4555566666665543
No 141
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.0011 Score=81.03 Aligned_cols=180 Identities=12% Similarity=0.166 Sum_probs=108.7
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-----------------------C
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-----------------------F 236 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------------------F 236 (1137)
.|...++++|.+...+.|...+..+ .-.+.+.++|+.|+||||+|+.++..+.-. |
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 3456688999999999999988643 234668899999999999999998876311 1
Q ss_pred CceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCC
Q 046314 237 EGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGF 314 (1137)
Q Consensus 237 ~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~ 314 (1137)
+... +. .....+...+. +++.++.. .-..+++=++|+|+++.. +..+.|+..+...
T Consensus 91 n~~~-ld-----~~~~~~vd~Ir-~li~~~~~---------------~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 91 NIHE-LD-----AASNNSVDDIR-NLIEQVRI---------------PPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred ceEE-ec-----ccccCCHHHHH-HHHHHHhh---------------CcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 1110 10 01111111111 11111100 001234457899999764 4466777666655
Q ss_pred CCCCEEEEEe-CChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 315 CPGSRIVVTT-RDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 315 ~~gsrIIiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
.+++.+|++| +...+..... ....++++++++.++..+.+...+-......+ .+.+..+++.++|..-
T Consensus 149 p~~tifIL~tt~~~kIl~tI~-SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~--~~al~~La~~s~gdlr 217 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTIL-SRCQIFDFNRIQVADIVNHLQYVASKEGITAE--PEALNVIAQKADGGMR 217 (614)
T ss_pred CCCeEEEEEeCCchhchHHHH-hhhheeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 5666665544 4444443321 12238999999999999888876644332221 3456778889998764
No 142
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=1.3e-05 Score=83.86 Aligned_cols=197 Identities=16% Similarity=0.151 Sum_probs=123.4
Q ss_pred ceEEEEecCCCCCCCCCC----cccccceeecccCCchhhhhh-hhhccccceeEEecCCCCCCCccCCC-CCCCcccEe
Q 046314 593 LKYLHLHKYPLRTLPENF----KPKNLIELNLPFSKIVQIWEE-KRYVKAFKLKSINLSHSQYLIRIPDP-SETPSLERI 666 (1137)
Q Consensus 593 L~~L~l~~~~l~~lp~~~----~l~~L~~L~L~~n~i~~l~~~-~~~~~l~~L~~L~Ls~n~~~~~~p~~-~~l~~L~~L 666 (1137)
+..|.+.++.+.+..... ..+.+++|||.+|.|+.-.+- .-.-.+|.|++|+|++|++...+..+ ....||+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 445666666665544322 567899999999998754322 22345679999999999987666555 466799999
Q ss_pred eccCCCCc-cccCccccCCCcCceEeccCCcCcccCCCC---CC--CCCCceEeccCCccC-----CCCCcccCCCcEEE
Q 046314 667 NLWNCTNL-AWVPSSIQNFNHLSLLCFQGCKNLRSFPSN---LH--FVSPVNIDCSFCVNL-----TEFPRISGNITKLN 735 (1137)
Q Consensus 667 ~L~~~~~l-~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~---~~--l~~L~~L~ls~c~~l-----~~~~~~~~~L~~L~ 735 (1137)
.|.|.... .....++..+++++.|.++.|+ ++.+-.. +. .+.+.+|.+.+|... -.+...++|+..+-
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 99875432 2244567788888888888763 2221111 11 234566666666422 23445566778888
Q ss_pred ecCCCccccCc--cccCCCCCcEEeccccccccc-ccccccCCCCCcEeccccccccc
Q 046314 736 LCDTAIEEVPS--SVECLTNLEYLYINRCKRLKR-VSTSICKLKSLIWLCLNECLNLE 790 (1137)
Q Consensus 736 L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~L~~~~~~~ 790 (1137)
+..+.+..... +...++.+-.|+|+.+++-.. --+.+.++++|..|.+++++...
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 88887776543 355666677777777664332 11335566777777777666554
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.82 E-value=0.00043 Score=87.88 Aligned_cols=171 Identities=12% Similarity=0.107 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC----
Q 046314 161 KLVQVIVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF---- 236 (1137)
Q Consensus 161 ~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---- 236 (1137)
..+++...++..+. .+...+.+|||+.++.++...|... ...-+.++|.+|+||||+|+.+++++....
T Consensus 168 ~~l~~~~~~L~~~~-----r~~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~ 240 (852)
T TIGR03345 168 SALDQYTTDLTAQA-----REGKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240 (852)
T ss_pred hhHHHHhhhHHHHh-----cCCCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence 35566665655544 2345578999999999999888643 233556999999999999999999875432
Q ss_pred --CceEEEeeccchhcc---CcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH-------H-
Q 046314 237 --EGNCFIENVREEIEN---GVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE-------Q- 303 (1137)
Q Consensus 237 --~~~~~~~~~~~~~s~---~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------~- 303 (1137)
...+|..++..-.+. ...+..-.++++..+ ++ .+++++|++|+++... +
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~----------------~~--~~~~~ILfIDEih~l~~~g~~~~~~ 302 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEV----------------KA--SPQPIILFIDEAHTLIGAGGQAGQG 302 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHHHHHH----------------Hh--cCCCeEEEEeChHHhccCCCccccc
Confidence 122333222220100 011112222222211 11 2468999999985531 1
Q ss_pred -HH-HHhcccCCCCCCCEEEEEeCChhhHHhhC-----CCCccEEEEccCCHHHHHHHHHhh
Q 046314 304 -LK-YFVGWLHGFCPGSRIVVTTRDKQVLRKHG-----VNDEYVYEVERLNEDEGLELFYKY 358 (1137)
Q Consensus 304 -l~-~l~~~~~~~~~gsrIIiTTR~~~v~~~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~ 358 (1137)
.. .|.+.+. ...-++|-||.......... .....++.|++++.+++.+++...
T Consensus 303 d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 303 DAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 11 2333322 12345666665432111000 012238999999999999997544
No 144
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.81 E-value=0.0014 Score=68.72 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=41.8
Q ss_pred CCCCCCccchhhHHHHHHHhhc--cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 181 SDSSKGLVGLNSRIECIKSLLC--VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
+...++++|.|...+.|.+-.. .......-|.+||..|.|||++++++.+++..+=
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 4455789999999988865322 1122356678899999999999999999876544
No 145
>PF14516 AAA_35: AAA-like domain
Probab=97.80 E-value=0.004 Score=70.72 Aligned_cols=280 Identities=13% Similarity=0.123 Sum_probs=146.5
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhc-cCcChHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIE-NGVGLVHL 258 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s-~~~~~~~l 258 (1137)
.+.+.+-.|+|...-+++.+.+.. .-..+.|.|+-.+|||+|...+.++....=-.++++ ++....+ ...+....
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHH
Confidence 345566778998555555555532 235899999999999999999998886542233344 3333111 12345555
Q ss_pred HHHHHHHHhC----cc-c----c--C-CCCCccHHHHHhh---cCCceEEEEeCCCCHHH----HHHHhcccC-CC----
Q 046314 259 HKQVVSLLLG----ER-I----E--M-GGPNIPAYTLERL---RRTKVFFVLDDVSKFEQ----LKYFVGWLH-GF---- 314 (1137)
Q Consensus 259 ~~~ll~~l~~----~~-~----~--~-~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~----l~~l~~~~~-~~---- 314 (1137)
.+.+...+.. .. . . . ........+.+.+ .+++++|+||+|+..-. .+.+.+.+. |.
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 5555444322 11 0 0 1 1122333444433 26899999999965321 122222110 00
Q ss_pred --CC-CCEEEEEeCChh---hHHhh--CCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 315 --CP-GSRIVVTTRDKQ---VLRKH--GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 315 --~~-gsrIIiTTR~~~---v~~~~--~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
.. ..-.+|...... ..... ...-...+++++++.+|...|..++...-. ....+++...++|+|.-
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~------~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS------QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC------HHHHHHHHHHHCCCHHH
Confidence 00 111122222111 11100 011123789999999999999988753311 22378999999999999
Q ss_pred HHHHhhhhccCCHHHHHHHHHHHhccCCcccHHHHHHHhhccC--ChhhHhHhhhcccccCCcCHHHHHHHHhhcC--Cc
Q 046314 387 LEVLGSSLHQKSKLDWENVLDNLKQISGVSRIYNVLRISYEEL--SFEEKSTFLDIACFFKGECKDRVLMLLHDRQ--YN 462 (1137)
Q Consensus 387 l~~lg~~L~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L--~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~~--~~ 462 (1137)
+..++..+...... .+.+++.-.... ..-.+-++--.+.| .++.++++ ..++.... ..
T Consensus 236 v~~~~~~l~~~~~~-~~~l~~~a~~~~--~~~~~hL~~l~~~L~~~~~L~~~~---------------~~il~~~~~~~~ 297 (331)
T PF14516_consen 236 VQKACYLLVEEQIT-LEQLLEEAITDN--GIYNDHLDRLLDRLQQNPELLEAY---------------QQILFSGEPVDL 297 (331)
T ss_pred HHHHHHHHHHccCc-HHHHHHHHHHhc--ccHHHHHHHHHHHHccCHHHHHHH---------------HHHHhCCCCccc
Confidence 99999988653211 222222111110 01111122222222 22223332 23333221 11
Q ss_pred hhHHHHHHHhccCceeeCCeEEehH
Q 046314 463 VTHVLSILIDKSLITEHNNRLHMHE 487 (1137)
Q Consensus 463 ~~~~l~~L~~~sLi~~~~~~~~mHd 487 (1137)
.......|...|||...++.+....
T Consensus 298 ~~~~~~~L~~~GLV~~~~~~~~~~n 322 (331)
T PF14516_consen 298 DSDDIYKLESLGLVKRDGNQLEVRN 322 (331)
T ss_pred ChHHHHHHHHCCeEEEeCCEEEEEc
Confidence 2345778999999999988887753
No 146
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.78 E-value=7.3e-05 Score=86.79 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=91.2
Q ss_pred CCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|++++++....|-. +. ..+.....
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~-~seL~~k~ 257 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VV-GSELIQKY 257 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Ee-cchhhhhh
Confidence 35678999999999887742 11235678899999999999999999987655421 11 00000000
Q ss_pred cC-hHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcccCCC-
Q 046314 253 VG-LVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE----------------QLKYFVGWLHGF- 314 (1137)
Q Consensus 253 ~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~- 314 (1137)
.+ .....+. .+.......+.+|+||+++... .+..++..+..+
T Consensus 258 ~Ge~~~~vr~-------------------lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 258 LGDGPKLVRE-------------------LFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred cchHHHHHHH-------------------HHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 00 0011111 1122223567888889874211 122233333222
Q ss_pred -CCCCEEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhcccC
Q 046314 315 -CPGSRIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYAFRQ 362 (1137)
Q Consensus 315 -~~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~ 362 (1137)
..+.+||+||.....+... ..+. .++++..+.++..++|..++.+.
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~--~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDR--KIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEE--EEEeCCCCHHHHHHHHHHHHhcC
Confidence 2456788888766544332 1233 78999999999999999886443
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00066 Score=79.96 Aligned_cols=160 Identities=17% Similarity=0.146 Sum_probs=91.5
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCC--ceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFE--GNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
..-+.|+|.+|+|||+||+++++.+....+ .+.|+. ...+..++...+... ....+++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~--------~~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG--------KLNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc--------cHHHHHHH
Confidence 345899999999999999999998876543 234443 123333443333211 12223444
Q ss_pred hcCCceEEEEeCCCCH---HHH-HHHhcccCC-CCCCCEEEEEeC-ChhhHHhh------CCCCccEEEEccCCHHHHHH
Q 046314 286 LRRTKVFFVLDDVSKF---EQL-KYFVGWLHG-FCPGSRIVVTTR-DKQVLRKH------GVNDEYVYEVERLNEDEGLE 353 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~---~~l-~~l~~~~~~-~~~gsrIIiTTR-~~~v~~~~------~~~~~~~~~v~~L~~~ea~~ 353 (1137)
.+.+.-+|++||++.. ... +.+...+.. ...|..||+||. ...-+... ......++++++.+.++-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 4444568999999643 111 222221111 123557888874 43322111 01112378999999999999
Q ss_pred HHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHH
Q 046314 354 LFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALE 388 (1137)
Q Consensus 354 Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~ 388 (1137)
++.+.+......-+ +++..-|++++.|.--.|.
T Consensus 271 IL~~~~~~~~~~l~--~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 271 IARKMLEIEHGELP--EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHhcCCCCC--HHHHHHHHhccccCHHHHH
Confidence 99888743322222 4566777777777654333
No 148
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.0007 Score=82.02 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=107.1
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC-CceEEEeeccchhccCcChHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF-EGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
.|...++++|.+.-.+.+...+..+. -.+...++|+.|+||||+|+.+++.+-..- ... ...+.-..
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-----------~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-----------EPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-----------CCCCccHH
Confidence 35567889999999999999986542 356677899999999999999998653111 000 00000000
Q ss_pred HHHHHHHHhCccccCC-----CCCccHHHHHh-----hcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEe-C
Q 046314 259 HKQVVSLLLGERIEMG-----GPNIPAYTLER-----LRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTT-R 325 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~~~-----~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT-R 325 (1137)
.+.+.......-...+ +.+.++.+.+. ..+++-++|+|+++.. .....|+..+....+...+|++| .
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 1111000000000000 00111112222 1345568899999864 45777776665444455555544 4
Q ss_pred ChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 326 DKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 326 ~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
...+..... .....++..+++.++..+.+...+-......+ .+.+..+++.++|.+.
T Consensus 159 ~~ki~~tI~-SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R 215 (559)
T PRK05563 159 PHKIPATIL-SRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMR 215 (559)
T ss_pred hhhCcHHHH-hHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 433332221 12237899999999988888776643332222 4556777888888774
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00039 Score=84.62 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=107.7
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-C-C-------------------c
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-F-E-------------------G 238 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~-------------------~ 238 (1137)
.|...+++||.+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. . . .
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d 89 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD 89 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 3456688999999999999988643 224567899999999999999999875321 1 0 0
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 316 (1137)
.+.+. .....++..+ +++...+.. .-...++-++|+|+|+.. ...+.|+..+....+
T Consensus 90 ~~eid-----~~s~~~v~~i-r~l~~~~~~---------------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~ 148 (576)
T PRK14965 90 VFEID-----GASNTGVDDI-RELRENVKY---------------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPP 148 (576)
T ss_pred eeeee-----ccCccCHHHH-HHHHHHHHh---------------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCC
Confidence 00010 0001111111 112111100 001234457889999764 346667666655555
Q ss_pred CCEEEEEe-CChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc-hhHHHH
Q 046314 317 GSRIVVTT-RDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP-LALEVL 390 (1137)
Q Consensus 317 gsrIIiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P-Lal~~l 390 (1137)
...+|++| ....+..... .....+++.+++.++..+.+...+-.....-+ .+....+++.++|.. .|+..+
T Consensus 149 ~~~fIl~t~~~~kl~~tI~-SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~--~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 149 HVKFIFATTEPHKVPITIL-SRCQRFDFRRIPLQKIVDRLRYIADQEGISIS--DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CeEEEEEeCChhhhhHHHH-HhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 66666555 4444433221 11237899999999988888765533222111 455667888888865 444443
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.73 E-value=0.00036 Score=80.57 Aligned_cols=174 Identities=18% Similarity=0.232 Sum_probs=98.1
Q ss_pred CCCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhcc
Q 046314 183 SSKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIEN 251 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~ 251 (1137)
.-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|-. +. .
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~---i~-----~-- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR---VV-----G-- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE---Ee-----h--
Confidence 346789999999988876631 11346789999999999999999999876544321 11 0
Q ss_pred CcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH------------HH----HHHHhcccCCC-
Q 046314 252 GVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF------------EQ----LKYFVGWLHGF- 314 (1137)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------------~~----l~~l~~~~~~~- 314 (1137)
..+ .....++. ...+.+.+.......+.+|++|+++.. .. +..++..+..+
T Consensus 213 ----s~l----~~k~~ge~----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 ----SEF----VQKYLGEG----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred ----HHH----HHHhcchh----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 000 00000000 000011112223457889999997532 11 22333333322
Q ss_pred -CCCCEEEEEeCChhhHHh-----hCCCCccEEEEccCCHHHHHHHHHhhcccCCCC-ChhHHHHHHHHHHHhCCCc
Q 046314 315 -CPGSRIVVTTRDKQVLRK-----HGVNDEYVYEVERLNEDEGLELFYKYAFRQSHC-PEHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 315 -~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~G~P 384 (1137)
..+..||+||.....+.. ...+. .++++..+.++..++|..+..+.... .-++ .++++.+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~--~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDR--KIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccE--EEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 245678888876543322 12333 78999999999988888765433221 1222 34455565543
No 151
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.72 E-value=0.00066 Score=79.78 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=90.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCC--ceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFE--GNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
...+.|+|.+|+|||+||+++++.+..+.+ .++++. ...+...+...+... ....+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN--------KMEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC--------CHHHHHHH
Confidence 356889999999999999999998876643 233432 122233333333211 12233444
Q ss_pred hcCCceEEEEeCCCCHH---H-HHHHhcccCCC-CCCCEEEEEeCCh-hhHHhh------CCCCccEEEEccCCHHHHHH
Q 046314 286 LRRTKVFFVLDDVSKFE---Q-LKYFVGWLHGF-CPGSRIVVTTRDK-QVLRKH------GVNDEYVYEVERLNEDEGLE 353 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~~---~-l~~l~~~~~~~-~~gsrIIiTTR~~-~v~~~~------~~~~~~~~~v~~L~~~ea~~ 353 (1137)
+++ .-+|||||++... . -+.+...+... ..|..||||+... ..+..+ ......++++++.+.++-.+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 443 3378899996421 1 12222222111 2355678877542 221111 11112378999999999999
Q ss_pred HHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHH
Q 046314 354 LFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALE 388 (1137)
Q Consensus 354 Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~ 388 (1137)
++...+-.....-+ ++....|++.+.|..-.+.
T Consensus 276 il~~~~~~~~~~l~--~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 276 ILQKKAEEEGLELP--DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHH
Confidence 99888754322222 5666777777777765433
No 152
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.71 E-value=5.2e-05 Score=73.37 Aligned_cols=87 Identities=25% Similarity=0.479 Sum_probs=46.4
Q ss_pred ccEEEcccccccCCc-hHHHHHHHHhcC-------CCcE----------EEcC-CCCCCCcchHHHHHHhhhcceeEEEe
Q 046314 10 YDVFLSFRGEDTREN-FTSHLYAALCGK-------KIKT----------FIDE-DLNRGDEISPALMKAIEGSKISVIIF 70 (1137)
Q Consensus 10 ~dvFis~~~~d~r~~-~~~~l~~~l~~~-------g~~~----------~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~ 70 (1137)
|.|||||+++| .. .+..|...+... .+.. +.+. +....+.|...|.++|..|.++||++
T Consensus 1 ~~vFIS~~~~d--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLi 78 (130)
T PF08937_consen 1 YKVFISYSHDD--DDWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLI 78 (130)
T ss_dssp ----------T--HH-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE-
T ss_pred CCccccccccC--cHHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEe
Confidence 67999999999 44 666677666663 2221 1122 23345588999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHhhhcCCCeEEEEE
Q 046314 71 SKDYASSKWCLNELVKILKCKNLKGQTVIPIY 102 (1137)
Q Consensus 71 S~~y~~s~~c~~el~~~~~~~~~~~~~v~pvf 102 (1137)
|++-..|+|+-.|+..+++ .+..||-|.
T Consensus 79 g~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 79 GPNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp -TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 9999999999999998775 444566663
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.71 E-value=0.00095 Score=85.07 Aligned_cols=173 Identities=11% Similarity=0.072 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC----
Q 046314 161 KLVQVIVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF---- 236 (1137)
Q Consensus 161 ~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---- 236 (1137)
..+++...++..+. .+..-+.+|||+.++.++...|... ...-+.++|.+|+|||+||+.++.++....
T Consensus 159 ~~l~~~~~~l~~~~-----r~~~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~ 231 (857)
T PRK10865 159 QALKKYTIDLTERA-----EQGKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG 231 (857)
T ss_pred hHHHHHhhhHHHHH-----hcCCCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchh
Confidence 35566666655544 2334567999999999999988643 234566999999999999999999875432
Q ss_pred --CceEEEeeccchhccC---cChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH---------
Q 046314 237 --EGNCFIENVREEIENG---VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE--------- 302 (1137)
Q Consensus 237 --~~~~~~~~~~~~~s~~---~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------- 302 (1137)
...++..+........ .....-.+.++..+ . -.+++++|++|+++...
T Consensus 232 l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~----------------~--~~~~~~ILfIDEih~l~~~~~~~~~~ 293 (857)
T PRK10865 232 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL----------------A--KQEGNVILFIDELHTMVGAGKADGAM 293 (857)
T ss_pred hCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHH----------------H--HcCCCeEEEEecHHHhccCCCCccch
Confidence 2233332222211000 01111122221111 1 12568999999986542
Q ss_pred HHHHHhcccCCCCCCCEEEEEeCChhhHHhh----C-CCCccEEEEccCCHHHHHHHHHhhc
Q 046314 303 QLKYFVGWLHGFCPGSRIVVTTRDKQVLRKH----G-VNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 303 ~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~----~-~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
+...++.+... ...-++|-||-........ . ......+.+...+.++..+++....
T Consensus 294 d~~~~lkp~l~-~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 294 DAGNMLKPALA-RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hHHHHhcchhh-cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 12233322221 1234555555443321100 0 1112267788889999999886543
No 154
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00097 Score=75.10 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=62.6
Q ss_pred CCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCC
Q 046314 288 RTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSH 364 (1137)
Q Consensus 288 ~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 364 (1137)
+.|+ +|+|+++. .+....|+..+....+++.+|+||.+.. ++... ......+.+.+++.+++.+.+.... .. .
T Consensus 106 ~~kv-~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI-~SRc~~~~~~~~~~~~~~~~L~~~~-~~-~ 181 (328)
T PRK05707 106 GRKV-VLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTI-KSRCQQQACPLPSNEESLQWLQQAL-PE-S 181 (328)
T ss_pred CCeE-EEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHH-HhhceeeeCCCcCHHHHHHHHHHhc-cc-C
Confidence 3444 46799976 4457777776665556788888887764 33222 1123379999999999999997653 11 1
Q ss_pred CChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 365 CPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 365 ~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
. .+.+..++..++|.|+....+
T Consensus 182 ~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 334557789999999765544
No 155
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.71 E-value=5.6e-05 Score=84.48 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=60.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc-cCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCC-------Cc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN-EFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGP-------NI 278 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~-------~~ 278 (1137)
.-+.++|+|++|+||||||+++|+.+.. +|+..+|+..+++ ...++.++++++...+.....+.... ..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE---R~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE---RPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC---chhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 4467899999999999999999997754 7999999985544 12356677777764322211111100 01
Q ss_pred cHHHHHh-hcCCceEEEEeCCCCHHH
Q 046314 279 PAYTLER-LRRTKVFFVLDDVSKFEQ 303 (1137)
Q Consensus 279 ~~~l~~~-L~~kr~LlVLDdv~~~~~ 303 (1137)
++.-+.. -.+++++|++|++.....
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHHHH
Confidence 1111111 357999999999976544
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.69 E-value=0.00062 Score=81.02 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=90.8
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCc--eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEG--NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
..-+.|+|.+|+|||+||+++++.+..+++. +.|+. ...+...+...+... ....+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN--------TMEEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC--------cHHHHHHH
Confidence 3568999999999999999999998776543 33332 122223333333211 12233444
Q ss_pred hcCCceEEEEeCCCCH---H-HHHHHhcccCC-CCCCCEEEEEeCChh-h--------HHhhCCCCccEEEEccCCHHHH
Q 046314 286 LRRTKVFFVLDDVSKF---E-QLKYFVGWLHG-FCPGSRIVVTTRDKQ-V--------LRKHGVNDEYVYEVERLNEDEG 351 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~---~-~l~~l~~~~~~-~~~gsrIIiTTR~~~-v--------~~~~~~~~~~~~~v~~L~~~ea 351 (1137)
++ +.-+|||||++.. + ..+.+...+.. ...|..|||||.... . ...+. ...++++++++.++-
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~--~gl~v~i~~pd~~~r 285 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFE--WGLTVDIEPPDLETR 285 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhc--CCeeEEecCCCHHHH
Confidence 44 3448899999542 1 12222221111 123556888776432 1 11222 223799999999999
Q ss_pred HHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhH
Q 046314 352 LELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 352 ~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal 387 (1137)
.+++...+-.....-+ +++..-|++.+.|..-.+
T Consensus 286 ~~il~~~~~~~~~~l~--~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 286 IAILKKKAEEEGIDLP--DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHHcCCCCC--HHHHHHHHcCcCCCHHHH
Confidence 9999988754322111 456677788888776543
No 157
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.69 E-value=9.9e-07 Score=96.44 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=41.4
Q ss_pred ccceeecccCCchhhh-hhhhhccccceeEEecCCCCCCCccCC--C-CCCCcccEeeccCCCCccccC--ccccCCCcC
Q 046314 614 NLIELNLPFSKIVQIW-EEKRYVKAFKLKSINLSHSQYLIRIPD--P-SETPSLERINLWNCTNLAWVP--SSIQNFNHL 687 (1137)
Q Consensus 614 ~L~~L~L~~n~i~~l~-~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~-~~l~~L~~L~L~~~~~l~~~p--~~i~~L~~L 687 (1137)
.|+.|.+.++.-.... -......++++++|++.+|..++...- + ..+++|++|+|..|..+.... .-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4566666655422211 112223345666666666654333221 1 345666666666665443321 112345566
Q ss_pred ceEeccCCcCcc
Q 046314 688 SLLCFQGCKNLR 699 (1137)
Q Consensus 688 ~~L~L~~c~~l~ 699 (1137)
++|+++.|..+.
T Consensus 219 ~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 219 KYLNLSWCPQIS 230 (483)
T ss_pred HHhhhccCchhh
Confidence 666666665443
No 158
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0015 Score=73.26 Aligned_cols=193 Identities=11% Similarity=0.059 Sum_probs=109.3
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc---------------cCCceEEEeeccchh
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN---------------EFEGNCFIENVREEI 249 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------~F~~~~~~~~~~~~~ 249 (1137)
++++|.+...+.+...+..+ .-.....++|+.|+||+++|.++++.+-. .++...|+..... .
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~-~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ-H 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc-c
Confidence 56899999999999988644 22578999999999999999999987522 2233344431100 0
Q ss_pred ccCcChHHHHHHHHHHHhCccc--cCCCCCccHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEE
Q 046314 250 ENGVGLVHLHKQVVSLLLGERI--EMGGPNIPAYTLERL-----RRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRI 320 (1137)
Q Consensus 250 s~~~~~~~l~~~ll~~l~~~~~--~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrI 320 (1137)
+..... ...+........ ..-..+.++.+.+.+ .+++-++|+|+++.. .....|+..+.... .+.+
T Consensus 82 -~g~~~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 -QGKLIT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred -cccccc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000 000000000000 000001122233333 245668899998753 44666666665444 4455
Q ss_pred EEEeC-ChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 321 VVTTR-DKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 321 IiTTR-~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
|++|. ...++.... .....+++.+++.++..+.+........ . ......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~-SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~---~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIV-SRCQIIPFYRLSDEQLEQVLKRLGDEEI--L---NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHH-hhceEEecCCCCHHHHHHHHHHhhcccc--c---hhHHHHHHHHcCCCHHHHHHH
Confidence 55554 444444332 2234899999999999999988752211 1 111357899999999765543
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.64 E-value=0.0019 Score=82.81 Aligned_cols=173 Identities=9% Similarity=0.068 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC-----
Q 046314 162 LVQVIVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF----- 236 (1137)
Q Consensus 162 ~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F----- 236 (1137)
.+++...++..+. .+...+.+|||+.++.++...|.... ..-+.++|.+|+|||++|+.++.++...+
T Consensus 155 ~l~~~~~~l~~~~-----~~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l 227 (852)
T TIGR03346 155 ALEKYARDLTERA-----REGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESL 227 (852)
T ss_pred HHHHHhhhHHHHh-----hCCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhh
Confidence 4555555554443 23345679999999999999886432 34456899999999999999999875532
Q ss_pred -CceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh--cCCceEEEEeCCCCHH---------HH
Q 046314 237 -EGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL--RRTKVFFVLDDVSKFE---------QL 304 (1137)
Q Consensus 237 -~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~---------~l 304 (1137)
...+|..++.............. ..+..+.+.+ .+++++|++|+++... +.
T Consensus 228 ~~~~~~~l~~~~l~a~~~~~g~~e-----------------~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~ 290 (852)
T TIGR03346 228 KNKRLLALDMGALIAGAKYRGEFE-----------------ERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDA 290 (852)
T ss_pred cCCeEEEeeHHHHhhcchhhhhHH-----------------HHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHH
Confidence 22333322221000000000000 0111111222 2468999999996432 12
Q ss_pred HHHhcccCCCCCCCEEEEEeCChhhHHhhC-----CCCccEEEEccCCHHHHHHHHHhhc
Q 046314 305 KYFVGWLHGFCPGSRIVVTTRDKQVLRKHG-----VNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 305 ~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
..++...... ..-++|-+|.....-.... ......+.|+.++.++..+++....
T Consensus 291 ~~~Lk~~l~~-g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 291 GNMLKPALAR-GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhchhhhc-CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 2222222211 2234555554433211000 0112368899999999999887653
No 160
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0012 Score=77.57 Aligned_cols=153 Identities=15% Similarity=0.120 Sum_probs=84.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcC
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRR 288 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 288 (1137)
.-+.|+|+.|+|||+||+++++.+......+.++. ...+...+...+... ..+.++...+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~--------~~~~f~~~~~- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG--------EMQRFRQFYR- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc--------hHHHHHHHcc-
Confidence 56889999999999999999998865544445543 122333333333211 1122344443
Q ss_pred CceEEEEeCCCCHH----HHHHHhcccCC-CCCCCEEEEEeCCh-hhHH----hh--CCCCccEEEEccCCHHHHHHHHH
Q 046314 289 TKVFFVLDDVSKFE----QLKYFVGWLHG-FCPGSRIVVTTRDK-QVLR----KH--GVNDEYVYEVERLNEDEGLELFY 356 (1137)
Q Consensus 289 kr~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~-~v~~----~~--~~~~~~~~~v~~L~~~ea~~Lf~ 356 (1137)
+.-+|++||++... .-+.+...+.. ...|..||+||... ..+. .. ......++++++++.++..+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 34478889985431 12222221110 12456788888542 2111 11 11122389999999999999998
Q ss_pred hhcccCCCCChhHHHHHHHHHHHhCCC
Q 046314 357 KYAFRQSHCPEHLTALSKKAVRYAEGN 383 (1137)
Q Consensus 357 ~~a~~~~~~~~~~~~l~~~iv~~~~G~ 383 (1137)
+++-.....-+ ++...-+++.+.|.
T Consensus 282 ~k~~~~~~~l~--~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSIRIE--ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCCCCC--HHHHHHHHHhcCCC
Confidence 87744321111 34444455555544
No 161
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.62 E-value=7.2e-05 Score=80.46 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=61.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc-cCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCC-------Cc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN-EFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGP-------NI 278 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~-------~~ 278 (1137)
.-..++|.|++|+|||||++.+++.+.. +|+..+|+..+++ ...++.++++.+...+.......+.. ..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e---r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE---RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC---CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4467899999999999999999997754 6898989874443 23578888888833332222111110 01
Q ss_pred cHHHHH-hhcCCceEEEEeCCCCHHH
Q 046314 279 PAYTLE-RLRRTKVFFVLDDVSKFEQ 303 (1137)
Q Consensus 279 ~~~l~~-~L~~kr~LlVLDdv~~~~~ 303 (1137)
.+..+. +-.++++++++|++....+
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~a~ 117 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRLAR 117 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHhhh
Confidence 111111 1348999999999966443
No 162
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.61 E-value=0.0017 Score=69.59 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=29.1
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
...+.++|.+|+|||+||.++++.+..+-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457889999999999999999998866555555553
No 163
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.60 E-value=0.0012 Score=73.05 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=71.6
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhccC--CceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNEF--EGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLR 287 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 287 (1137)
-+.++|.+|.|||++|+.++..+...- ....|+. ++. . .++..+.+.. .. .+.+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~-----v~~----~----~l~~~~~g~~----~~----~~~~~~~ 118 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS-----VTR----D----DLVGQYIGHT----AP----KTKEILK 118 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE-----ecH----H----HHhHhhcccc----hH----HHHHHHH
Confidence 588999999999999999988664321 1112332 111 1 1122221111 00 1111111
Q ss_pred -CCceEEEEeCCCCH-----------HHHHHHhcccCCCCCCCEEEEEeCChhhHHhhCCC------CccEEEEccCCHH
Q 046314 288 -RTKVFFVLDDVSKF-----------EQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKHGVN------DEYVYEVERLNED 349 (1137)
Q Consensus 288 -~kr~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~------~~~~~~v~~L~~~ 349 (1137)
-..-+|+||+++.. +..+.|...+.....+.+||+++-....-.....+ -...+++++++.+
T Consensus 119 ~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 119 RAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred HccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 12358889999632 22455555554444566777776543221111111 0127999999999
Q ss_pred HHHHHHHhhccc
Q 046314 350 EGLELFYKYAFR 361 (1137)
Q Consensus 350 ea~~Lf~~~a~~ 361 (1137)
|-.+++...+-.
T Consensus 199 dl~~I~~~~l~~ 210 (284)
T TIGR02880 199 ELLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999998887633
No 164
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.58 E-value=0.0054 Score=72.64 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=85.1
Q ss_pred CCCccchhhHHHHHHHhhc--------cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcCh
Q 046314 184 SKGLVGLNSRIECIKSLLC--------VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGL 255 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~ 255 (1137)
.+++.|.+...+.+..... .+-...+-|.++|++|.|||.+|+++++.+.-.| +..+.....+...+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccCh
Confidence 3567888876666654221 1223467799999999999999999999865332 111111101111111
Q ss_pred -HHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH--------------HHHHHhcccCCCCCCCEE
Q 046314 256 -VHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE--------------QLKYFVGWLHGFCPGSRI 320 (1137)
Q Consensus 256 -~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------------~l~~l~~~~~~~~~gsrI 320 (1137)
....++++ ...-...+++|++|+++..- .+..++..+.....+--|
T Consensus 303 se~~l~~~f-------------------~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 303 SESRMRQMI-------------------RIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred HHHHHHHHH-------------------HHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 11111111 11123468899999986321 022233222222233445
Q ss_pred EEEeCChhh-----HHhhCCCCccEEEEccCCHHHHHHHHHhhccc
Q 046314 321 VVTTRDKQV-----LRKHGVNDEYVYEVERLNEDEGLELFYKYAFR 361 (1137)
Q Consensus 321 IiTTR~~~v-----~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~ 361 (1137)
|.||.+... .+....+. .+.++..+.++-.++|..+..+
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~--~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDE--IFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCe--EEEeCCcCHHHHHHHHHHHHhh
Confidence 667765542 22123444 8999999999999999888754
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.57 E-value=0.00041 Score=88.49 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-C---
Q 046314 161 KLVQVIVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-F--- 236 (1137)
Q Consensus 161 ~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F--- 236 (1137)
..+++...++.++- .....+.++||+.+++++.+.|... ...-+.++|.+|+|||++|+.++.++... -
T Consensus 160 ~~l~~~~~~l~~~a-----~~~~~~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~ 232 (821)
T CHL00095 160 PTLEEFGTNLTKEA-----IDGNLDPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI 232 (821)
T ss_pred hHHHHHHHHHHHHH-----HcCCCCCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 35666666665442 1223457999999999999999643 23345799999999999999999987532 1
Q ss_pred --CceEEEeeccchhccC---cChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH---------
Q 046314 237 --EGNCFIENVREEIENG---VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE--------- 302 (1137)
Q Consensus 237 --~~~~~~~~~~~~~s~~---~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------- 302 (1137)
...+|..+........ ...+.-.+.++ .+.-..++++|++|+++..-
T Consensus 233 l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~-------------------~~~~~~~~~ILfiDEih~l~~~g~~~g~~ 293 (821)
T CHL00095 233 LEDKLVITLDIGLLLAGTKYRGEFEERLKRIF-------------------DEIQENNNIILVIDEVHTLIGAGAAEGAI 293 (821)
T ss_pred hcCCeEEEeeHHHHhccCCCccHHHHHHHHHH-------------------HHHHhcCCeEEEEecHHHHhcCCCCCCcc
Confidence 2334433332211100 00111111111 11123467899999984321
Q ss_pred HHHHH-hcccCCCCCCCEEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHh
Q 046314 303 QLKYF-VGWLHGFCPGSRIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYK 357 (1137)
Q Consensus 303 ~l~~l-~~~~~~~~~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~ 357 (1137)
....+ .+.+. ...-++|.+|......... -......++++..+.++..+++..
T Consensus 294 ~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 294 DAANILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred cHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 12222 22221 1234556665544321110 011223688999999998888764
No 166
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=3.1e-05 Score=81.16 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=44.3
Q ss_pred CCCCCEEeecCCCCCCcc--cccCCCCCCCEEEccCCCCCcCC---CCCCcccccceeccccccccccCCC
Q 046314 833 LSSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRGNNFESLP---SIPELPPSLKWLQASNCKRLQFLPE 898 (1137)
Q Consensus 833 l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp---~~~~l~~~L~~L~l~~c~~L~~lp~ 898 (1137)
+|++..+-+..|.+.+.. .....++.+-.|+|+.|+|.+.. .+..++ .|..|.+++.+....+..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~-~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP-QLVDLRVSENPLSDPLRG 267 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc-hhheeeccCCcccccccC
Confidence 567777777777776532 34556777778888888887655 455666 788888777766555443
No 167
>CHL00176 ftsH cell division protein; Validated
Probab=97.53 E-value=0.00075 Score=82.45 Aligned_cols=173 Identities=17% Similarity=0.268 Sum_probs=98.1
Q ss_pred CCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 183 SSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
..++++|.++..+++.+.+.. +..-.+-|.++|++|.|||++|++++......| +. ++.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~-----is~- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FS-----ISG- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----ee-----ccH-
Confidence 446789998888777766531 112245699999999999999999998753322 21 100
Q ss_pred cChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcccCCC--
Q 046314 253 VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE----------------QLKYFVGWLHGF-- 314 (1137)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~-- 314 (1137)
..+.... .+ .....+...+.......+.+|+|||++... .+..++..+..+
T Consensus 250 ---s~f~~~~----~g----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 250 ---SEFVEMF----VG----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred ---HHHHHHh----hh----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 0010000 00 000111122234445678999999995431 134444333322
Q ss_pred CCCCEEEEEeCChhhHHh-----hCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCC
Q 046314 315 CPGSRIVVTTRDKQVLRK-----HGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEG 382 (1137)
Q Consensus 315 ~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G 382 (1137)
..+-.||.||.....+.. ...+. .+.++..+.++-.+++..++......+ ......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~--~I~v~lPd~~~R~~IL~~~l~~~~~~~---d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDR--QITVSLPDREGRLDILKVHARNKKLSP---DVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCce--EEEECCCCHHHHHHHHHHHHhhcccch---hHHHHHHHhcCCC
Confidence 235566667765443322 12333 789999999999999988875422111 2233556666666
No 168
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.0019 Score=77.26 Aligned_cols=152 Identities=13% Similarity=0.174 Sum_probs=87.1
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCC--ceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFE--GNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL 286 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 286 (1137)
..+.|+|..|.|||.|++++++.+...+. .+.|+. ...+..++...+... ..+.+++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~--------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG--------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc--------cHHHHHHHh
Confidence 45899999999999999999998765442 234443 223333333333211 122234444
Q ss_pred cCCceEEEEeCCCCH---HHH-HHHhcccCC-CCCCCEEEEEeCChh---------hHHhhCCCCccEEEEccCCHHHHH
Q 046314 287 RRTKVFFVLDDVSKF---EQL-KYFVGWLHG-FCPGSRIVVTTRDKQ---------VLRKHGVNDEYVYEVERLNEDEGL 352 (1137)
Q Consensus 287 ~~kr~LlVLDdv~~~---~~l-~~l~~~~~~-~~~gsrIIiTTR~~~---------v~~~~~~~~~~~~~v~~L~~~ea~ 352 (1137)
++- =+|||||++.. +.+ +.|...+.. ...|..|||||.... +...+... .+++++..+.+.-.
T Consensus 376 ~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G--Lvv~I~~PD~EtR~ 452 (617)
T PRK14086 376 REM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG--LITDVQPPELETRI 452 (617)
T ss_pred hcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC--ceEEcCCCCHHHHH
Confidence 433 47888999543 211 222222111 124567888887531 22222222 38999999999999
Q ss_pred HHHHhhcccCCCCChhHHHHHHHHHHHhCCCc
Q 046314 353 ELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 353 ~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P 384 (1137)
+++.+++.......+ +++..-|++.+.+..
T Consensus 453 aIL~kka~~r~l~l~--~eVi~yLa~r~~rnv 482 (617)
T PRK14086 453 AILRKKAVQEQLNAP--PEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHHHhcCCCCC--HHHHHHHHHhccCCH
Confidence 999988754332222 455555666655553
No 169
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.51 E-value=0.00023 Score=80.15 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=63.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCC---c----
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPN---I---- 278 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~---~---- 278 (1137)
.-+.++|+|++|.|||||++.+++.+..+ |+..+|+..+++ ...++.++++.++..+.....+..... +
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE---R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE---RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC---CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 34679999999999999999999987655 999999885544 235788888888654433321111111 0
Q ss_pred cHHHH-HhhcCCceEEEEeCCCCHHH
Q 046314 279 PAYTL-ERLRRTKVFFVLDDVSKFEQ 303 (1137)
Q Consensus 279 ~~~l~-~~L~~kr~LlVLDdv~~~~~ 303 (1137)
.+..+ .+-.+++++|++|++.....
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHHHH
Confidence 11111 12358999999999976544
No 170
>PRK12377 putative replication protein; Provisional
Probab=97.50 E-value=0.0026 Score=68.39 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=29.6
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
...+.++|.+|+|||+||.++++.+..+.-.+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998876655556654
No 171
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=8e-06 Score=75.90 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=69.1
Q ss_pred CcEecccccccc--cccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCC
Q 046314 778 LIWLCLNECLNL--EKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGC 855 (1137)
Q Consensus 778 L~~L~L~~~~~~--~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 855 (1137)
+..++|+.|+.. ...+..+.....|...+|++|.++.+|..+. ..++.++.|+|++|.++++|..+..
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft----------~kf~t~t~lNl~~neisdvPeE~Aa 98 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT----------IKFPTATTLNLANNEISDVPEELAA 98 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh----------hccchhhhhhcchhhhhhchHHHhh
Confidence 344555555443 2333445555667777888888887777552 2456778888888888888888888
Q ss_pred CCCCCEEEccCCCCCcCC-CCCCcccccceeccccc
Q 046314 856 LPSLEWLELRGNNFESLP-SIPELPPSLKWLQASNC 890 (1137)
Q Consensus 856 l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c 890 (1137)
++.|+.|+++.|.+...| .+..+. +|-.|+..++
T Consensus 99 m~aLr~lNl~~N~l~~~p~vi~~L~-~l~~Lds~~n 133 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLNAEPRVIAPLI-KLDMLDSPEN 133 (177)
T ss_pred hHHhhhcccccCccccchHHHHHHH-hHHHhcCCCC
Confidence 888888888888888777 444454 6666655443
No 172
>CHL00181 cbbX CbbX; Provisional
Probab=97.48 E-value=0.0027 Score=70.33 Aligned_cols=131 Identities=11% Similarity=0.127 Sum_probs=72.3
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhcc-C-CceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNE-F-EGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL 286 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 286 (1137)
..+.++|.+|.||||+|+.+++..... + ...-|+. ++ ... +.....+.. .......+.+ .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-----v~----~~~----l~~~~~g~~----~~~~~~~l~~-a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-----VT----RDD----LVGQYIGHT----APKTKEVLKK-A 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-----ec----HHH----HHHHHhccc----hHHHHHHHHH-c
Confidence 458899999999999999998865321 1 1111222 11 111 122221111 0000111111 1
Q ss_pred cCCceEEEEeCCCC-----------HHHHHHHhcccCCCCCCCEEEEEeCChhhHHhh--------CCCCccEEEEccCC
Q 046314 287 RRTKVFFVLDDVSK-----------FEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKH--------GVNDEYVYEVERLN 347 (1137)
Q Consensus 287 ~~kr~LlVLDdv~~-----------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~--------~~~~~~~~~v~~L~ 347 (1137)
..-+|++|+++. .+..+.|...+.....+.+||+++....+.... ..+. .+++++++
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~--~i~F~~~t 197 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIAN--HVDFPDYT 197 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCc--eEEcCCcC
Confidence 234889999964 233555555454444556777777543321111 1333 79999999
Q ss_pred HHHHHHHHHhhccc
Q 046314 348 EDEGLELFYKYAFR 361 (1137)
Q Consensus 348 ~~ea~~Lf~~~a~~ 361 (1137)
.+|..+++...+-+
T Consensus 198 ~~el~~I~~~~l~~ 211 (287)
T CHL00181 198 PEELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887744
No 173
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.48 E-value=7.5e-06 Score=89.74 Aligned_cols=254 Identities=20% Similarity=0.175 Sum_probs=128.8
Q ss_pred CCceEEEEecCCCCCCCCC----C--cccccceeeccc-CCchhhhhhhhhccccceeEEecCCCCCCCc---cCCCCCC
Q 046314 591 EKLKYLHLHKYPLRTLPEN----F--KPKNLIELNLPF-SKIVQIWEEKRYVKAFKLKSINLSHSQYLIR---IPDPSET 660 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~----~--~l~~L~~L~L~~-n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~---~p~~~~l 660 (1137)
+++.+|.+.++. .+... + .+.+|+.|+|.. ..++...-..-.-.|++|++|+++.|.-... -+-+.++
T Consensus 164 pnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 164 PNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred Cchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 356666665553 11111 0 455666666665 3333322211222345666666666653322 0113455
Q ss_pred CcccEeeccCCCCccc--cCccccCCCcCceEeccCCcCcccCCCC---CCCCCCceEeccCCccCCCCCcccCCCcEEE
Q 046314 661 PSLERINLWNCTNLAW--VPSSIQNFNHLSLLCFQGCKNLRSFPSN---LHFVSPVNIDCSFCVNLTEFPRISGNITKLN 735 (1137)
Q Consensus 661 ~~L~~L~L~~~~~l~~--~p~~i~~L~~L~~L~L~~c~~l~~lp~~---~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~ 735 (1137)
.+|+.+.+.||..... +-..-+....+..+++..|..++...-. -....|+.|+.++|..++..+-
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l--------- 312 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL--------- 312 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH---------
Confidence 5566665555543221 1111123333444444455433322100 0133445555555544332210
Q ss_pred ecCCCccccCccccCCCCCcEEeccccccccccc--ccccCCCCCcEeccccccccccc--ccccCCCCCcceecccCcc
Q 046314 736 LCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVS--TSICKLKSLIWLCLNECLNLEKS--WSELGNLKSFQYIGAHGST 811 (1137)
Q Consensus 736 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~L~~~~~~~~~--~~~l~~l~~L~~L~l~~n~ 811 (1137)
-.-..+.++|+.|-++.|+..+..- .--.+.+.|+.+++.+|...... ...-.+++.|+.|.++++.
T Consensus 313 ---------~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 313 ---------WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred ---------HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 0113456778888888777543221 11235677888888877655332 2333467788888888664
Q ss_pred ccccCchhhccccccccccCCCCCCCEEeecCCCCCC--cccccCCCCCCCEEEccCCCC
Q 046314 812 ISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA--IPEEIGCLPSLEWLELRGNNF 869 (1137)
Q Consensus 812 i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l 869 (1137)
...-. .+.++.+ .-.++..|+.|.|++|..+. ..+.+..+++|+.++|-+++-
T Consensus 384 ~itD~-gi~~l~~----~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 384 LITDE-GIRHLSS----SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhhhh-hhhhhhh----ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 33211 1111111 12356788899999997664 566778889999999988653
No 174
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00064 Score=84.56 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 162 LVQVIVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 162 ~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+++...++...- .....+.++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.+++++.
T Consensus 168 ~l~~~~~~l~~~a-----~~g~~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 168 RMENFTTNLNQLA-----RVGGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred HHHHHHHhHHHHH-----HcCCCCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 5555555554332 12234579999999999999887532 23446899999999999999998763
No 175
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.43 E-value=0.0011 Score=80.06 Aligned_cols=174 Identities=19% Similarity=0.236 Sum_probs=94.3
Q ss_pred CCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 183 SSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
.-++++|.+...+++.+++.. +..-.+-+.++|++|.|||++|++++......| +. ++
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-----i~-- 120 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-----IS-- 120 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-----cc--
Confidence 446788988877777665431 122345688999999999999999998753332 11 10
Q ss_pred cChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcccCCCC-
Q 046314 253 VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE----------------QLKYFVGWLHGFC- 315 (1137)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~~- 315 (1137)
...+... ..+. ....+...+.......+.+|+||+++... .+..++..+..+.
T Consensus 121 --~~~~~~~----~~g~----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 121 --GSDFVEM----FVGV----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHHHHHH----Hhcc----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 0011100 0000 00011112233334567899999985421 1233433333222
Q ss_pred -CCCEEEEEeCChhhHH-----hhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCC
Q 046314 316 -PGSRIVVTTRDKQVLR-----KHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGN 383 (1137)
Q Consensus 316 -~gsrIIiTTR~~~v~~-----~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~ 383 (1137)
.+-.||.||....... ....+. .++++..+.++-.+++..+..+.....+ .....+++.+.|.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~--~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~ 259 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDR--QVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGF 259 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceE--EEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCC
Confidence 3445566665543211 112344 7999999999999999887644322211 1134667777764
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0037 Score=70.92 Aligned_cols=151 Identities=11% Similarity=0.119 Sum_probs=87.8
Q ss_pred Cccc-hhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc---------------------CCceEEEe
Q 046314 186 GLVG-LNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE---------------------FEGNCFIE 243 (1137)
Q Consensus 186 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~ 243 (1137)
.++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4667 666777777777533 235667999999999999999998875321 11111211
Q ss_pred eccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEE
Q 046314 244 NVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIV 321 (1137)
Q Consensus 244 ~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrII 321 (1137)
.. ......+++. ++...+. .....+.+=++|+|+++.. +....|+..+....+++.+|
T Consensus 85 ~~----~~~i~id~ir-~l~~~~~---------------~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PD----GQSIKKDQIR-YLKEEFS---------------KSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred cc----cccCCHHHHH-HHHHHHh---------------hCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 00 0001111111 1111100 0002234456889998753 44677777776666788888
Q ss_pred EEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhh
Q 046314 322 VTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKY 358 (1137)
Q Consensus 322 iTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 358 (1137)
++|.+.. +.... ......+++.+++.++..+.+...
T Consensus 145 l~t~~~~~ll~TI-rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTI-LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHH-HhhceeeeCCCCCHHHHHHHHHHc
Confidence 7776644 33222 122338999999999998888654
No 177
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00096 Score=72.56 Aligned_cols=171 Identities=23% Similarity=0.344 Sum_probs=103.6
Q ss_pred CCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCc
Q 046314 185 KGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGV 253 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~ 253 (1137)
.++=|.+..+++|.+.... +-+.++=|.++|++|.|||-||++|+++....|=.+ ++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv-----vgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV-----VGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEe-----ccH------
Confidence 3455788888888776642 224567899999999999999999999877655322 111
Q ss_pred ChHHHHHHHHHHHhCccccCCCCCccHHHHHhh-cCCceEEEEeCCCCH--------------HH--HHHHhcccCCCCC
Q 046314 254 GLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL-RRTKVFFVLDDVSKF--------------EQ--LKYFVGWLHGFCP 316 (1137)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--------------~~--l~~l~~~~~~~~~ 316 (1137)
++..+..++ +..++..+-+.- ...+..|.+|.++.. -| +-.|+..++.|.+
T Consensus 220 -------ElVqKYiGE-----GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 -------ELVQKYIGE-----GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred -------HHHHHHhcc-----chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 111111111 222222222222 356788999988432 11 3345556666653
Q ss_pred --CCEEEEEeCChhhHH-----hhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCCc
Q 046314 317 --GSRIVVTTRDKQVLR-----KHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 317 --gsrIIiTTR~~~v~~-----~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~P 384 (1137)
.-|||..|-..+++. --..+. .++++..+.+.-.++|.-|+.+..... -+++. +++.+.|.-
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DR--kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~s 357 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDR--KIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFS 357 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccc--eeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCc
Confidence 457888776554432 223455 899998888888999998886654332 23443 455555554
No 178
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0056 Score=68.35 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=64.1
Q ss_pred CCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCC
Q 046314 288 RTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSH 364 (1137)
Q Consensus 288 ~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 364 (1137)
+++=++|+|+++.. .....|+..+....+++.+|++|.+.+ ++.... .....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr-SRCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR-SRCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH-hhheEeeCCCcCHHHHHHHHHHcC----C
Confidence 44568899999764 446677776666667887877776543 333321 123378999999999999887542 1
Q ss_pred CChhHHHHHHHHHHHhCCCchhHHHHh
Q 046314 365 CPEHLTALSKKAVRYAEGNPLALEVLG 391 (1137)
Q Consensus 365 ~~~~~~~l~~~iv~~~~G~PLal~~lg 391 (1137)
. ...+..++..++|.|+....+.
T Consensus 187 ~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2335678999999998665543
No 179
>PRK08116 hypothetical protein; Validated
Probab=97.34 E-value=0.00056 Score=74.93 Aligned_cols=101 Identities=21% Similarity=0.274 Sum_probs=55.9
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcC
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRR 288 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 288 (1137)
..+.++|.+|+|||.||.++++.+..+...++|+. ...+...+....... .......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~-----~~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS-----GKEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc-----ccccHHHHHHHhcC
Confidence 45889999999999999999998876644445543 122333332222111 11112223444554
Q ss_pred CceEEEEeCCCC--HHH--HHHHhcccCC-CCCCCEEEEEeCC
Q 046314 289 TKVFFVLDDVSK--FEQ--LKYFVGWLHG-FCPGSRIVVTTRD 326 (1137)
Q Consensus 289 kr~LlVLDdv~~--~~~--l~~l~~~~~~-~~~gsrIIiTTR~ 326 (1137)
-. ||||||+.. ... .+.+...+.. ...|..+||||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44 899999932 111 2222222211 2356678999864
No 180
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.32 E-value=0.0015 Score=63.27 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=21.2
Q ss_pred EEEEccCCChhhHHHHHHHHHhh
Q 046314 211 VGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 181
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.30 E-value=0.0031 Score=73.26 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=95.8
Q ss_pred hHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccc
Q 046314 192 SRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERI 271 (1137)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~ 271 (1137)
.-+.++.+.+... ..++.|.|+-++||||+++.+.....+. .+++..... ......+.+..+..
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~-~~~~~~l~d~~~~~--------- 87 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDL-RLDRIELLDLLRAY--------- 87 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecch-hcchhhHHHHHHHH---------
Confidence 4444555554322 2299999999999999997776665554 444432211 11111111111111
Q ss_pred cCCCCCccHHHHHhhcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhHHhh----CCCCccEEEEccCC
Q 046314 272 EMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKH----GVNDEYVYEVERLN 347 (1137)
Q Consensus 272 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~----~~~~~~~~~v~~L~ 347 (1137)
...-..++.+|+||.|.....|+..+..+...++. +|+||+-+..+.... -......+++-||+
T Consensus 88 -----------~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 88 -----------IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred -----------HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 11111178899999999999998888777666666 899998776543221 01223379999999
Q ss_pred HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 348 EDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 348 ~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
..|-..+-...+ .+. .... .-+-.-..||.|-++..-
T Consensus 156 F~Efl~~~~~~~----~~~-~~~~-~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 156 FREFLKLKGEEI----EPS-KLEL-LFEKYLETGGFPESVKAD 192 (398)
T ss_pred HHHHHhhccccc----chh-HHHH-HHHHHHHhCCCcHHHhCc
Confidence 999877643111 000 1111 112233568999886543
No 182
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.25 E-value=0.0068 Score=65.84 Aligned_cols=187 Identities=15% Similarity=0.117 Sum_probs=105.7
Q ss_pred HHHHHHHhhccC-CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCc------eEEEeeccchhccCcChHHHHHHHHHH
Q 046314 193 RIECIKSLLCVG-FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEG------NCFIENVREEIENGVGLVHLHKQVVSL 265 (1137)
Q Consensus 193 ~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~~s~~~~~~~l~~~ll~~ 265 (1137)
-++.|++++... ....+-+.|+|.+|+|||++++.+.+.....++. ++.+. .....+...+...++..
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-----~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-----MPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-----cCCCCChHHHHHHHHHH
Confidence 345556666533 2345679999999999999999999876444432 33333 56677888999999999
Q ss_pred HhCccccCCC-CCccHHHHHhhcCC-ceEEEEeCCCCH------HH--HHHHhcccCCCCCCCEEEEEeCCh--------
Q 046314 266 LLGERIEMGG-PNIPAYTLERLRRT-KVFFVLDDVSKF------EQ--LKYFVGWLHGFCPGSRIVVTTRDK-------- 327 (1137)
Q Consensus 266 l~~~~~~~~~-~~~~~~l~~~L~~k-r~LlVLDdv~~~------~~--l~~l~~~~~~~~~gsrIIiTTR~~-------- 327 (1137)
+......... ........+.++.- -=+||+|.+++. +| .-.++..+...-.=+-|.|-|++.
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 9876533222 22222333445433 338899999663 12 111222222122334455555432
Q ss_pred hhHHhhCCCCccEEEEccCCHHH-HHHHHHhhcc--cCCCC-ChhHHHHHHHHHHHhCCCchhHHH
Q 046314 328 QVLRKHGVNDEYVYEVERLNEDE-GLELFYKYAF--RQSHC-PEHLTALSKKAVRYAEGNPLALEV 389 (1137)
Q Consensus 328 ~v~~~~~~~~~~~~~v~~L~~~e-a~~Lf~~~a~--~~~~~-~~~~~~l~~~iv~~~~G~PLal~~ 389 (1137)
+++.. ..++.++.+..++ ..+|+..... .-..+ .-...+++..|...++|+.--+..
T Consensus 200 QLa~R-----F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 200 QLASR-----FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHhc-----cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 22222 1256777776554 4455433321 11111 112367889999999998754433
No 183
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.24 E-value=0.0019 Score=81.82 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=93.0
Q ss_pred CCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
.+++.|++..++++.+++.. +-...+.|.++|++|.|||+||+++++.....| +.+ +..+..+..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i-~~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISI-NGPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEE-ecHHHhccc
Confidence 35688999999999887642 112356789999999999999999998775433 112 111101111
Q ss_pred cCh-HHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcccCCC-CCC
Q 046314 253 VGL-VHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLHGF-CPG 317 (1137)
Q Consensus 253 ~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~-~~g 317 (1137)
.+. ....+. .+.......+.+|+||+++.. .....|...+... ..+
T Consensus 253 ~g~~~~~l~~-------------------lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 253 YGESEERLRE-------------------IFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred ccHHHHHHHH-------------------HHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 110 011111 112223455678999998542 1123333333222 233
Q ss_pred CEEEE-EeCChhhH-Hhh----CCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc
Q 046314 318 SRIVV-TTRDKQVL-RKH----GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 318 srIIi-TTR~~~v~-~~~----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P 384 (1137)
..+|| ||....-. ... ..+. .++++..+.++-.+++..+.-+..... ......+++.+.|.-
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~--~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDR--EIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccE--EEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 34444 45433211 111 1233 688888899998888886543221111 112355677777754
No 184
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.24 E-value=0.014 Score=74.86 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=41.3
Q ss_pred CCCccchhhHHHHHHHhhccC------CCC-eEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 184 SKGLVGLNSRIECIKSLLCVG------FPD-VRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
...++|.+..++.+...+... ... ...+.+.|++|+|||++|+.++..+...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 356899999999998887642 112 4578899999999999999999876544
No 185
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.22 E-value=0.007 Score=67.23 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=83.7
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCc-ChHHHHHHHHHHHhCccccCCCCCccHHHHH
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGV-GLVHLHKQVVSLLLGERIEMGGPNIPAYTLE 284 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 284 (1137)
.-++.++|||++|.|||.+|++++.++.-.| +..+..+-.+... ..++..++++..... ..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~~--------------~a 207 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAAD--------------II 207 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHHH--------------Hh
Confidence 4578999999999999999999999876544 2222222112221 223444444332210 00
Q ss_pred hhcCCceEEEEeCCCCH------------HHH--HHHhcccC----------C----CCCCCEEEEEeCChhhHHhh---
Q 046314 285 RLRRTKVFFVLDDVSKF------------EQL--KYFVGWLH----------G----FCPGSRIVVTTRDKQVLRKH--- 333 (1137)
Q Consensus 285 ~L~~kr~LlVLDdv~~~------------~~l--~~l~~~~~----------~----~~~gsrIIiTTR~~~v~~~~--- 333 (1137)
+-+.++++|++|+++.. .++ ..|+...+ | ..++-.||+||-+.+.+...
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR 287 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR 287 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence 12568899999998421 121 23332211 1 23456678888766532221
Q ss_pred --CCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch
Q 046314 334 --GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 334 --~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL 385 (1137)
..+. . +...+.++-.+++..+.-+...+ ..-..++++...|=|+
T Consensus 288 pGRfDk--~--i~lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 288 DGRMEK--F--YWAPTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCCc--e--eCCCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 1222 2 34567777777777665333222 1223456666666654
No 186
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.21 E-value=0.00073 Score=66.16 Aligned_cols=34 Identities=38% Similarity=0.473 Sum_probs=27.4
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
+.+.|+|++|+||||+|+.++..+......++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999999876665334444
No 187
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.02 Score=63.87 Aligned_cols=92 Identities=12% Similarity=0.191 Sum_probs=62.9
Q ss_pred CCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCCh-hhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCC
Q 046314 288 RTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDK-QVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSH 364 (1137)
Q Consensus 288 ~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 364 (1137)
+++=++|+|+++.. .....|+..+....+++.+|.+|.+. .++.... .....+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~-SRCq~~~~~~~~~~~~~~~L~~~~~---- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV-SRCQQWVVTPPSTAQAMQWLKGQGI---- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH-hcceeEeCCCCCHHHHHHHHHHcCC----
Confidence 33457888999764 45777777777666777777766654 4444332 2234799999999999998876421
Q ss_pred CChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 365 CPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 365 ~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
. .+..++..++|.|+....+
T Consensus 182 -~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 -T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1346789999999876555
No 188
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0044 Score=70.56 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=80.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL 286 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 286 (1137)
....+.|||..|.|||.|++++.+......+....+. ++ .......+...+.. ...+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y-----~~----se~f~~~~v~a~~~--------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY-----LT----SEDFTNDFVKALRD--------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe-----cc----HHHHHHHHHHHHHh--------hhHHHHHHhh
Confidence 3567999999999999999999999887777443332 11 12233333333322 1122334444
Q ss_pred cCCceEEEEeCCCCH----HHHHHHhcccCCC-CCCCEEEEEeCChh---------hHHhhCCCCccEEEEccCCHHHHH
Q 046314 287 RRTKVFFVLDDVSKF----EQLKYFVGWLHGF-CPGSRIVVTTRDKQ---------VLRKHGVNDEYVYEVERLNEDEGL 352 (1137)
Q Consensus 287 ~~kr~LlVLDdv~~~----~~l~~l~~~~~~~-~~gsrIIiTTR~~~---------v~~~~~~~~~~~~~v~~L~~~ea~ 352 (1137)
.-=++++||++.. ..-+.+...+... ..|-.||+|++... +...+.+.- ++++.+++.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl--~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGL--VVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhcee--EEeeCCCCHHHHH
Confidence 3337889998542 1122232222111 24448999986432 222333333 8999999999999
Q ss_pred HHHHhhccc
Q 046314 353 ELFYKYAFR 361 (1137)
Q Consensus 353 ~Lf~~~a~~ 361 (1137)
+.+.+.+..
T Consensus 251 aiL~kka~~ 259 (408)
T COG0593 251 AILRKKAED 259 (408)
T ss_pred HHHHHHHHh
Confidence 999887643
No 189
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.11 E-value=0.0043 Score=78.62 Aligned_cols=173 Identities=17% Similarity=0.226 Sum_probs=95.8
Q ss_pred CCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
-.++.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.....+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~----- 522 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPE----- 522 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHH-----
Confidence 35678999888888776542 112356689999999999999999999875443 1111111
Q ss_pred cChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--------------HHHHHHhcccCCC--CC
Q 046314 253 VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--------------EQLKYFVGWLHGF--CP 316 (1137)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--------------~~l~~l~~~~~~~--~~ 316 (1137)
++....++. ...+...+...-...+.+|++|+++.. ..+..++..++.. ..
T Consensus 523 ---------l~~~~vGes----e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 523 ---------ILSKWVGES----EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred ---------HhhcccCcH----HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 111111000 000111112222456789999998532 1134444444322 23
Q ss_pred CCEEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCCc
Q 046314 317 GSRIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 317 gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~P 384 (1137)
+--||.||...+.+... ..+. .+.++..+.++-.++|..+..+..... .++ ..+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~--~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDR--LILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccce--EEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 44456677555433221 2334 899999999999999987654332211 122 44556666643
No 190
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.10 E-value=0.0049 Score=74.82 Aligned_cols=54 Identities=26% Similarity=0.322 Sum_probs=44.3
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCC---CCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGF---PDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.|...++++|-+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45667889999999999999886432 3346899999999999999999998653
No 191
>PRK10536 hypothetical protein; Provisional
Probab=97.09 E-value=0.0028 Score=67.41 Aligned_cols=135 Identities=13% Similarity=0.173 Sum_probs=74.3
Q ss_pred CCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHH-h-hccCCceEEEeeccchhcc-----CcChH
Q 046314 184 SKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQ-V-SNEFEGNCFIENVREEIEN-----GVGLV 256 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~~~~~s~-----~~~~~ 256 (1137)
...+.++......+..++.. ..+|.+.|.+|.|||+||.+++.+ + .+.|...+.....-+ ..+ +.++.
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~-~ge~LGfLPG~~~ 128 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ-ADEDLGFLPGDIA 128 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC-chhhhCcCCCCHH
Confidence 35677888888888887742 349999999999999999999884 3 455554443321111 111 01111
Q ss_pred H----HHHHH---HHHHhCcc-cc-C--CCCCccH-HHHHhhcCCce---EEEEeCCCCH--HHHHHHhcccCCCCCCCE
Q 046314 257 H----LHKQV---VSLLLGER-IE-M--GGPNIPA-YTLERLRRTKV---FFVLDDVSKF--EQLKYFVGWLHGFCPGSR 319 (1137)
Q Consensus 257 ~----l~~~l---l~~l~~~~-~~-~--~~~~~~~-~l~~~L~~kr~---LlVLDdv~~~--~~l~~l~~~~~~~~~gsr 319 (1137)
+ ....+ +..+.+.. .. . .....++ .-...++++.+ +||+|.+.+. .+...++. ..+.+|+
T Consensus 129 eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~~sk 205 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGENVT 205 (262)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCCCCE
Confidence 1 11111 11111110 00 0 0001110 01234556554 9999999764 45666554 3579999
Q ss_pred EEEEeCC
Q 046314 320 IVVTTRD 326 (1137)
Q Consensus 320 IIiTTR~ 326 (1137)
||+|-=.
T Consensus 206 ~v~~GD~ 212 (262)
T PRK10536 206 VIVNGDI 212 (262)
T ss_pred EEEeCCh
Confidence 9998643
No 192
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.022 Score=63.78 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=62.4
Q ss_pred CCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCC
Q 046314 288 RTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSH 364 (1137)
Q Consensus 288 ~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 364 (1137)
+++=++|+|+++.. .....|+..+....++..+|++|.+.. ++.... .....+.+.+++.+++.+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~-SRC~~~~~~~~~~~~~~~~L~~~~~~--- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY-SRCQTWLIHPPEEQQALDWLQAQSSA--- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH-hhceEEeCCCCCHHHHHHHHHHHhcc---
Confidence 45557889999764 447777777776667788877777653 433321 12237999999999999998876411
Q ss_pred CChhHHHHHHHHHHHhCCCchhH
Q 046314 365 CPEHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 365 ~~~~~~~l~~~iv~~~~G~PLal 387 (1137)
. ...+..++..++|.|+..
T Consensus 182 -~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 -E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred -C---hHHHHHHHHHcCCCHHHH
Confidence 1 123556788999999643
No 193
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.016 Score=65.61 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=62.8
Q ss_pred CCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCC
Q 046314 288 RTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSH 364 (1137)
Q Consensus 288 ~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 364 (1137)
+++=++|+|+++.. +....|+..+....+++.+|.+|.+.+ ++.... ...+.+.+.+++.+++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr-SRCq~~~~~~~~~~~~~~~L~~~~-~--- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR-SRCRLHYLAPPPEQYALTWLSREV-T--- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH-hccccccCCCCCHHHHHHHHHHcc-C---
Confidence 45568889999763 457777777776667777777776644 443322 112368999999999998886542 1
Q ss_pred CChhHHHHHHHHHHHhCCCchhHH
Q 046314 365 CPEHLTALSKKAVRYAEGNPLALE 388 (1137)
Q Consensus 365 ~~~~~~~l~~~iv~~~~G~PLal~ 388 (1137)
.+ .+.+..++..++|.|....
T Consensus 182 ~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CC---HHHHHHHHHHcCCCHHHHH
Confidence 11 2336678999999996443
No 194
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.08 E-value=0.0092 Score=75.82 Aligned_cols=52 Identities=31% Similarity=0.421 Sum_probs=40.9
Q ss_pred CCccchhhHHHHHHHhhcc----CCCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 185 KGLVGLNSRIECIKSLLCV----GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
.+++|.+.-.+++.+++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4588999999888886642 222345799999999999999999999886554
No 195
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.04 E-value=0.017 Score=72.91 Aligned_cols=50 Identities=26% Similarity=0.290 Sum_probs=39.4
Q ss_pred CCCccchhhHHHHHHHhhccC------CCC-eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 184 SKGLVGLNSRIECIKSLLCVG------FPD-VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...++|.+..++.+...+... .+. ..++.++|++|+|||+||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 456899999999988877631 122 34688999999999999999998773
No 196
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0085 Score=70.45 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=93.3
Q ss_pred CCccchhhHHHHHHHhhc-----------cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCce----EEEeeccchh
Q 046314 185 KGLVGLNSRIECIKSLLC-----------VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGN----CFIENVREEI 249 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~----~~~~~~~~~~ 249 (1137)
+++=|.|+-..+|++... .+-...+-|..+|+||.|||++|+++++.-.-.|-.+ .|-..+++
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGe-- 511 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGE-- 511 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCc--
Confidence 444557777777765442 2335678899999999999999999999877766432 11111111
Q ss_pred ccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcccCCCCC
Q 046314 250 ENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 250 s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~~~ 316 (1137)
-++..++++++ .-+--+.+|.||.++.. ..+..|+..++....
T Consensus 512 -----SEr~ir~iF~k-------------------AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 512 -----SERAIREVFRK-------------------ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred -----hHHHHHHHHHH-------------------HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc
Confidence 12222332222 11233578888877432 125556655554444
Q ss_pred CCEEEE---EeCChhhHHhh----CCCCccEEEEccCCHHHHHHHHHhhcccCCCCCh-hHHHHH
Q 046314 317 GSRIVV---TTRDKQVLRKH----GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPE-HLTALS 373 (1137)
Q Consensus 317 gsrIIi---TTR~~~v~~~~----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~-~~~~l~ 373 (1137)
...|+| |-|...+-..+ ..+. .+.|+..+.+.-.++|..++-+....+. ++.+++
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~--iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDR--IIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccce--eEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 434433 33433322221 2445 8899999999999999999865544333 344443
No 197
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.02 E-value=0.00059 Score=69.79 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=26.5
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
..-+.++|.+|+|||.||.++.+.+..+=-.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356899999999999999999997655444456654
No 198
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.02 Score=60.02 Aligned_cols=180 Identities=17% Similarity=0.143 Sum_probs=100.3
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
++.+++.++|.-|.|||.++|++.....+.=-.++.+. ....+...+...+...+.... ........+.+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~~p-~~~~~~~~e~~~~~ 121 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLESQP-KVNVNAVLEQIDRE 121 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhccCc-cchhHHHHHHHHHH
Confidence 45679999999999999999955544432222222221 234455667777777766522 11111122222222
Q ss_pred h-----cCCc-eEEEEeCCCCH--HHHHHHhc--cc-CCCCCCCEEEEEeCCh-------hhHHhhCCCCccEEEEccCC
Q 046314 286 L-----RRTK-VFFVLDDVSKF--EQLKYFVG--WL-HGFCPGSRIVVTTRDK-------QVLRKHGVNDEYVYEVERLN 347 (1137)
Q Consensus 286 L-----~~kr-~LlVLDdv~~~--~~l~~l~~--~~-~~~~~gsrIIiTTR~~-------~v~~~~~~~~~~~~~v~~L~ 347 (1137)
| +++| +.+++|+..+. ++++.+.- .+ ..+..--+|+..-..+ .+....+-.....|+++|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 2 4677 99999998653 33444422 12 1111112233322111 11222221111139999999
Q ss_pred HHHHHHHHHhhcccCCCCChhH-HHHHHHHHHHhCCCchhHHHHhh
Q 046314 348 EDEGLELFYKYAFRQSHCPEHL-TALSKKAVRYAEGNPLALEVLGS 392 (1137)
Q Consensus 348 ~~ea~~Lf~~~a~~~~~~~~~~-~~l~~~iv~~~~G~PLal~~lg~ 392 (1137)
.++...++..+..+...+.+-+ .+....+.....|.|.++..++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999888888765443333222 34556788889999999887764
No 199
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.00 E-value=0.0092 Score=76.24 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=40.3
Q ss_pred CCCccchhhHHHHHHHhhccC------CCC-eEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 184 SKGLVGLNSRIECIKSLLCVG------FPD-VRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
...++|.+..++.+...+... .+. ...+.++|++|+|||++|+++++.+...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 456899999999988877532 122 2578899999999999999999876433
No 200
>PRK09183 transposase/IS protein; Provisional
Probab=96.99 E-value=0.0063 Score=66.42 Aligned_cols=35 Identities=29% Similarity=0.209 Sum_probs=25.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
...+.|+|++|+|||+||.++.......-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34688999999999999999988754433333444
No 201
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.99 E-value=0.00082 Score=50.88 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=28.6
Q ss_pred CCcEEEecCCCccccCccccCCCCCcEEeccccccc
Q 046314 730 NITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRL 765 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l 765 (1137)
+|++|++++|+|+++|..+++|++|+.|++++|++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 678888888888888888888888888888888754
No 202
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.00099 Score=66.67 Aligned_cols=86 Identities=26% Similarity=0.354 Sum_probs=53.0
Q ss_pred ccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc--cccCCCCCCCEEEccCCCCCcC
Q 046314 795 ELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRGNNFESL 872 (1137)
Q Consensus 795 ~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~l 872 (1137)
.|..++.|..|.+.+|.|+.+...+.. -+++|..|.|.+|+|.++- ..+..+|.|++|.+-+|.++..
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~----------~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDT----------FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK 128 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhh----------hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcc
Confidence 344556666666666666665544322 2466677777777666532 2356677778888877777765
Q ss_pred C-----CCCCcccccceecccccc
Q 046314 873 P-----SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 873 p-----~~~~l~~~L~~L~l~~c~ 891 (1137)
+ -+..+| +|+.|+...-.
T Consensus 129 ~~YR~yvl~klp-~l~~LDF~kVt 151 (233)
T KOG1644|consen 129 KNYRLYVLYKLP-SLRTLDFQKVT 151 (233)
T ss_pred cCceeEEEEecC-cceEeehhhhh
Confidence 5 345566 77777776543
No 203
>PRK08181 transposase; Validated
Probab=96.96 E-value=0.0012 Score=71.98 Aligned_cols=35 Identities=23% Similarity=0.129 Sum_probs=28.1
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.-+.++|.+|+|||.||.++.+....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999998766544455553
No 204
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.94 E-value=7e-05 Score=69.77 Aligned_cols=89 Identities=22% Similarity=0.229 Sum_probs=63.9
Q ss_pred cCCCCCcEecccccccccccccccC-CCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc
Q 046314 773 CKLKSLIWLCLNECLNLEKSWSELG-NLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE 851 (1137)
Q Consensus 773 ~~l~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~ 851 (1137)
.....|...+|++|. ...+|..|. ..+.++.|++++|.|..+|.. +..++.|+.|+++.|.+...|.
T Consensus 50 ~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE-----------~Aam~aLr~lNl~~N~l~~~p~ 117 (177)
T KOG4579|consen 50 SKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEE-----------LAAMPALRSLNLRFNPLNAEPR 117 (177)
T ss_pred hCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHH-----------HhhhHHhhhcccccCccccchH
Confidence 344455556666664 334444443 445777888888888888874 3456788888888888888888
Q ss_pred ccCCCCCCCEEEccCCCCCcCC
Q 046314 852 EIGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 852 ~l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
.+..|.+|-.|+..+|.+..+|
T Consensus 118 vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 118 VIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred HHHHHHhHHHhcCCCCccccCc
Confidence 8877888888888888888777
No 205
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.94 E-value=0.011 Score=64.88 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
+-|.+.|.+|+|||+||++++.....
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 35679999999999999999986543
No 206
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.93 E-value=0.00022 Score=87.78 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=64.6
Q ss_pred CCCCceEeccCCc----cCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccc-cccccccCCCCCcEe
Q 046314 707 FVSPVNIDCSFCV----NLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLK-RVSTSICKLKSLIWL 781 (1137)
Q Consensus 707 l~~L~~L~ls~c~----~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L 781 (1137)
+++|+.|.+++-. .+..+-..++||..||+++++++.+ .++++|++|+.|.+.+-.+.. ..-..+.+|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 4555555554422 1223344556888888888888888 668888888888877655433 112235678888888
Q ss_pred ccccccccccc------ccccCCCCCcceecccCcccc
Q 046314 782 CLNECLNLEKS------WSELGNLKSFQYIGAHGSTIS 813 (1137)
Q Consensus 782 ~L~~~~~~~~~------~~~l~~l~~L~~L~l~~n~i~ 813 (1137)
|+|.-...... .+.-..||+|+.|+.+++.+.
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88765433221 122334667777777766554
No 207
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.91 E-value=0.0069 Score=61.04 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=74.4
Q ss_pred chhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc--------------------cCCceEEEeeccch
Q 046314 189 GLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN--------------------EFEGNCFIENVREE 248 (1137)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------------------~F~~~~~~~~~~~~ 248 (1137)
|-+...+.|..++..+ .-...+.++|..|+||+++|.++++.+-. ..+...++.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 4566677777777533 22456789999999999999999986522 1223333321000
Q ss_pred hccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCC
Q 046314 249 IENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRD 326 (1137)
Q Consensus 249 ~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~ 326 (1137)
......+++. ++...+... ...+++=++|+||++. .+...+|+..+.....++++|++|++
T Consensus 79 -~~~i~i~~ir-~i~~~~~~~---------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 -KKSIKIDQIR-EIIEFLSLS---------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp -SSSBSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred -cchhhHHHHH-HHHHHHHHH---------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 0012222222 222221110 0123455889999986 44577777777666789999998887
Q ss_pred hh-hHHhhCCCCccEEEEccCC
Q 046314 327 KQ-VLRKHGVNDEYVYEVERLN 347 (1137)
Q Consensus 327 ~~-v~~~~~~~~~~~~~v~~L~ 347 (1137)
.. ++.... .....+.+++++
T Consensus 142 ~~~il~TI~-SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIR-SRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHH-TTSEEEEE----
T ss_pred hHHChHHHH-hhceEEecCCCC
Confidence 65 333221 122367776653
No 208
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.89 E-value=0.0077 Score=61.44 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=52.1
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc-cCCceEEEeeccchhccCcChHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN-EFEGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
.|..-.++||-+.-++++.-.-. +++.+-+.|.||+|+||||-+..+++++-+ .|...+.--| .|+..+..-+
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----ASdeRGIDvV 95 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----ASDERGIDVV 95 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----CccccccHHH
Confidence 34455679999999998887654 346788889999999999999999987643 3433322222 4445555544
Q ss_pred HHH
Q 046314 259 HKQ 261 (1137)
Q Consensus 259 ~~~ 261 (1137)
...
T Consensus 96 Rn~ 98 (333)
T KOG0991|consen 96 RNK 98 (333)
T ss_pred HHH
Confidence 443
No 209
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.89 E-value=0.0037 Score=65.44 Aligned_cols=110 Identities=13% Similarity=0.190 Sum_probs=65.0
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEE-eeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI-ENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLR 287 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 287 (1137)
.+|.|.|+.|.||||++..+...+.......++. .+-.+ .... . ...+. .............+.++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~----~-~~~~i---~q~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE----S-KRSLI---NQREVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc----C-cccee---eecccCCCccCHHHHHHHHhc
Confidence 4789999999999999999988776554444433 21111 0000 0 00000 000111122334556677788
Q ss_pred CCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhH
Q 046314 288 RTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVL 330 (1137)
Q Consensus 288 ~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 330 (1137)
..+=.+++|++.+.+.+...+... ..|..++.|+-...+.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 778899999998888766554422 2466677777665543
No 210
>PRK04132 replication factor C small subunit; Provisional
Probab=96.89 E-value=0.028 Score=70.29 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=89.1
Q ss_pred cCCChhhHHHHHHHHHhhc-cCCc-eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEE
Q 046314 216 MGGIGKTTLAKALFNQVSN-EFEG-NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFF 293 (1137)
Q Consensus 216 ~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~Ll 293 (1137)
+.++||||+|.++++++-. .+.. .+-+. .++..+...+++ ++....... +. -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN-----ASd~rgid~IR~-iIk~~a~~~-~~------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN-----ASDERGINVIRE-KVKEFARTK-PI------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe-----CCCcccHHHHHH-HHHHHHhcC-Cc------------CCCCCEEE
Confidence 7899999999999998633 3332 22332 333344444433 222221100 00 01245689
Q ss_pred EEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHH
Q 046314 294 VLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLT 370 (1137)
Q Consensus 294 VLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 370 (1137)
|+|+++.. ++...|...+.......++|.+|.+.. +..... .....+.+++++.++..+.+...+-.....-+ .
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr-SRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--~ 711 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--E 711 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh-hhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC--H
Confidence 99999874 356666666655556777777666554 322221 22348999999999988877765533222111 4
Q ss_pred HHHHHHHHHhCCCchhH
Q 046314 371 ALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 371 ~l~~~iv~~~~G~PLal 387 (1137)
+....+++.++|.+..+
T Consensus 712 e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 712 EGLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 56678899999988433
No 211
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.032 Score=63.01 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=60.8
Q ss_pred CCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCC-hhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCC
Q 046314 288 RTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRD-KQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSH 364 (1137)
Q Consensus 288 ~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 364 (1137)
+++=++|+|+++. .+....|+..+....+++.+|.+|.+ ..++.... .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~-SRcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTIL-SRCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHH-hcCEEEEecCCCHHHHHHHHHHcC----C
Confidence 3445788899976 45577787777766778877666655 44443322 122489999999999999997752 1
Q ss_pred CChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 365 CPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 365 ~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
+ + ...++..++|.|+....+
T Consensus 206 ~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C-h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999755444
No 212
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.86 E-value=0.0012 Score=65.92 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=54.6
Q ss_pred EEEccccccc-CCchHHHHHHHHhcC-CCcEEEcC-CCCC--CCcchHHHHHHhhhcceeEEEecccc
Q 046314 12 VFLSFRGEDT-RENFTSHLYAALCGK-KIKTFIDE-DLNR--GDEISPALMKAIEGSKISVIIFSKDY 74 (1137)
Q Consensus 12 vFis~~~~d~-r~~~~~~l~~~l~~~-g~~~~~d~-~~~~--g~~~~~~~~~~i~~s~~~i~v~S~~y 74 (1137)
|||||+.+.. ...+|..|++.|++. |+.|.+|. +... +..+..++.++++++...|+|+||.|
T Consensus 3 VfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 3 VFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 9999998552 246789999999999 99999998 7643 78899999999999999999999655
No 213
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.86 E-value=0.0022 Score=73.62 Aligned_cols=106 Identities=14% Similarity=0.195 Sum_probs=63.6
Q ss_pred CCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc--cCCceEEEeeccchhccCcChHHHHHH
Q 046314 184 SKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN--EFEGNCFIENVREEIENGVGLVHLHKQ 261 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~s~~~~~~~l~~~ 261 (1137)
..++++.+..++.+...|.. .+.|.++|++|+|||++|+.+++.+.. .++.+.|+. ++...+.......
T Consensus 174 l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt-----FHpsySYeDFI~G 244 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ-----FHQSYSYEDFIQG 244 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe-----ecccccHHHHhcc
Confidence 35678888899999888853 356888999999999999999997743 455555554 3333433333221
Q ss_pred HHHHHhCccccC--CCCCccHHHHHhhc--CCceEEEEeCCCCHH
Q 046314 262 VVSLLLGERIEM--GGPNIPAYTLERLR--RTKVFFVLDDVSKFE 302 (1137)
Q Consensus 262 ll~~l~~~~~~~--~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~ 302 (1137)
. ....... ......+.++.... ++++++|+|+++...
T Consensus 245 ~----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 245 Y----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred c----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1 1111110 01111222232222 468999999997644
No 214
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.85 E-value=0.028 Score=66.64 Aligned_cols=200 Identities=15% Similarity=0.122 Sum_probs=120.9
Q ss_pred CCCCCCCccchhhHHHHHHHhhcc--CC-CCeEEEEEEccCCChhhHHHHHHHHHhh-----c---cCCceEEEeeccch
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCV--GF-PDVRIVGIWGMGGIGKTTLAKALFNQVS-----N---EFEGNCFIENVREE 248 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~-----~---~F~~~~~~~~~~~~ 248 (1137)
...++..+-+||.+..+|+..+.. .. +.-..+-|.|.+|.|||+.+..|.+.+. + .|+. +.+.
T Consensus 391 ls~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veIN----- 464 (767)
T KOG1514|consen 391 LSAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEIN----- 464 (767)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEc-----
Confidence 344778899999999999998863 22 3345899999999999999999998553 2 2432 2333
Q ss_pred hccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhc-----CCceEEEEeCCCCH-----HHHHHHhcccCCC-CCC
Q 046314 249 IENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLR-----RTKVFFVLDDVSKF-----EQLKYFVGWLHGF-CPG 317 (1137)
Q Consensus 249 ~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~-----~~l~~l~~~~~~~-~~g 317 (1137)
...-.+..++...|...+.++... ....++.+..+.. .+.+++++|+++.. +.+-.+ +.|. .++
T Consensus 465 gm~l~~~~~~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~ 539 (767)
T KOG1514|consen 465 GLRLASPREIYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKN 539 (767)
T ss_pred ceeecCHHHHHHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCC
Confidence 223345788888888888776532 2222344454443 45688888987542 224443 3444 478
Q ss_pred CEEEEEeCChh-----------hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCCch
Q 046314 318 SRIVVTTRDKQ-----------VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGNPL 385 (1137)
Q Consensus 318 srIIiTTR~~~-----------v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~PL 385 (1137)
||++|-+=... +...+|.. .+..++-++++-.+....+.-+...-. ...+=+|++|+...|..-.
T Consensus 540 sKLvvi~IaNTmdlPEr~l~nrvsSRlg~t---Ri~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRr 616 (767)
T KOG1514|consen 540 SKLVVIAIANTMDLPERLLMNRVSSRLGLT---RICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARR 616 (767)
T ss_pred CceEEEEecccccCHHHHhccchhhhccce---eeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHH
Confidence 88876543221 11222332 477778888887777776654332222 2223334555555555555
Q ss_pred hHHHHhhh
Q 046314 386 ALEVLGSS 393 (1137)
Q Consensus 386 al~~lg~~ 393 (1137)
|+.+.-++
T Consensus 617 aldic~RA 624 (767)
T KOG1514|consen 617 ALDICRRA 624 (767)
T ss_pred HHHHHHHH
Confidence 55554443
No 215
>PRK06526 transposase; Provisional
Probab=96.82 E-value=0.0013 Score=71.18 Aligned_cols=34 Identities=29% Similarity=0.174 Sum_probs=25.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEE
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCF 241 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 241 (1137)
.+-+.++|++|+|||+||.++..+...+--.+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4568999999999999999999876544333333
No 216
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.82 E-value=0.002 Score=64.52 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=16.6
Q ss_pred ceeEEecCCCCCCCccCCCCCCCcccEeeccCCCC
Q 046314 639 KLKSINLSHSQYLIRIPDPSETPSLERINLWNCTN 673 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~ 673 (1137)
+...+||++|. +..+++|..+++|.+|.|.+|.+
T Consensus 43 ~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrI 76 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRI 76 (233)
T ss_pred ccceecccccc-hhhcccCCCccccceEEecCCcc
Confidence 44455555554 23344445555555555555433
No 217
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.80 E-value=0.0073 Score=76.87 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=40.7
Q ss_pred CCCccchhhHHHHHHHhhccC------CC-CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 184 SKGLVGLNSRIECIKSLLCVG------FP-DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
...++|.+..++.+.+.+... .. ...++.++|++|+|||.+|++++..+...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 357899999999998877421 12 24578999999999999999999877443
No 218
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.79 E-value=0.0025 Score=68.84 Aligned_cols=94 Identities=21% Similarity=0.312 Sum_probs=59.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcc-c---c-CCCCC----
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGER-I---E-MGGPN---- 277 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~-~---~-~~~~~---- 277 (1137)
.-+.++|.|.+|.||||||+.++++++.+|+..+++.-+++. ...+.++.+++...-.... . . .+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer---~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER---TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 346799999999999999999999998888888888766552 2334444454443211111 0 0 01110
Q ss_pred ----ccHHHHHhh---cCCceEEEEeCCCCHHH
Q 046314 278 ----IPAYTLERL---RRTKVFFVLDDVSKFEQ 303 (1137)
Q Consensus 278 ----~~~~l~~~L---~~kr~LlVLDdv~~~~~ 303 (1137)
..-.+.+++ +++.+|+|+||+....+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 111123444 38899999999966544
No 219
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.79 E-value=0.049 Score=63.60 Aligned_cols=87 Identities=23% Similarity=0.301 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcccCCCCcccCchhhHHHHHHHHHHHHhccccccCCCCCCCccchhhHHH----HHHHhhccCC----
Q 046314 134 TVRKWRDAMIKTSYLSGHESTKIRPEAKLVQVIVNDILKKLECKSISSDSSKGLVGLNSRIE----CIKSLLCVGF---- 205 (1137)
Q Consensus 134 ~v~~w~~aL~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~----~l~~~L~~~~---- 205 (1137)
.++.++.||-++- -..+.+++++..|..+. .. ......+-.++..++ +|.+.+....
T Consensus 26 ~l~ei~~aLl~ad-----------V~~~~~~~~~~~v~~~~-~~---~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~ 90 (437)
T PRK00771 26 VVKDIQRALLQAD-----------VNVKLVKELSKSIKERA-LE---EEPPKGLTPREHVIKIVYEELVKLLGEETEPLV 90 (437)
T ss_pred HHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHHH-hc---ccccccCCcHHHHHHHHHHHHHHHhCCCccccc
Confidence 4556777765431 12455666777776554 11 111222223333333 3444443211
Q ss_pred --CCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 206 --PDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 206 --~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
..+.+|.++|.+|+||||+|..++..+..+
T Consensus 91 ~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 91 LPLKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 347899999999999999999999877654
No 220
>PRK06921 hypothetical protein; Provisional
Probab=96.75 E-value=0.0024 Score=69.80 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=29.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 243 (1137)
..-+.++|.+|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999988765 44456654
No 221
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.012 Score=66.86 Aligned_cols=132 Identities=24% Similarity=0.240 Sum_probs=78.4
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
.....|.+.|++|+|||+||..++. ...|+.+-.+. ..+-.++.+-.+-.. +...+.+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS-----pe~miG~sEsaKc~~--------------i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS-----PEDMIGLSESAKCAH--------------IKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC-----hHHccCccHHHHHHH--------------HHHHHHHh
Confidence 3467788999999999999999875 46777554432 111122221111100 00111233
Q ss_pred hcCCceEEEEeCCCCHHH------------HHHHhcccCCC---CCCCEEEEEeCChhhHHhhCCCCc--cEEEEccCCH
Q 046314 286 LRRTKVFFVLDDVSKFEQ------------LKYFVGWLHGF---CPGSRIVVTTRDKQVLRKHGVNDE--YVYEVERLNE 348 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~~~------------l~~l~~~~~~~---~~gsrIIiTTR~~~v~~~~~~~~~--~~~~v~~L~~ 348 (1137)
-+..--.||+||++..-+ +++|+..+... |..--|+-||..+.++..++.... ..|+|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 344556899999965433 44444333322 233335668888889988875331 2799999988
Q ss_pred -HHHHHHHHhh
Q 046314 349 -DEGLELFYKY 358 (1137)
Q Consensus 349 -~ea~~Lf~~~ 358 (1137)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 6777777664
No 222
>PRK07261 topology modulation protein; Provisional
Probab=96.71 E-value=0.0051 Score=62.64 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 223
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.71 E-value=0.017 Score=73.98 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCCccchhhHHHHHHHhhccC------CCC-eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChH
Q 046314 184 SKGLVGLNSRIECIKSLLCVG------FPD-VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~ 256 (1137)
...++|.+..++.+...+... .+. ...+.++|+.|+|||+||+.+++.+-..-...+.+. ..+ ........
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~-~~~~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSE-YMEKHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chh-ccccccHH
Confidence 357899999999998877521 122 346779999999999999999987643322222222 221 11111111
Q ss_pred HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCc-eEEEEeCCCCH--HHHHHHhcccC
Q 046314 257 HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTK-VFFVLDDVSKF--EQLKYFVGWLH 312 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~l~~l~~~~~ 312 (1137)
. +.+......+......+.+.++.++ -+++||+++.. +..+.|+..+.
T Consensus 586 ~--------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 586 K--------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred H--------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 1 1221111111112223355565555 48889999763 33555554443
No 224
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.68 E-value=0.012 Score=61.08 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=98.5
Q ss_pred CCCccchhhHHHH---HHHhhcc----CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChH
Q 046314 184 SKGLVGLNSRIEC---IKSLLCV----GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 184 ~~~~vGr~~~~~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~ 256 (1137)
.++.||.+....+ |.+.|.. +...++-|..+|++|.|||.+|+++++...--|- ..+..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l----~vkat---------- 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL----LVKAT---------- 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE----EechH----------
Confidence 4678998876654 4555542 3345899999999999999999999987653332 11100
Q ss_pred HHHHHHHHHHhCccccCCCCCccHHHHHh-hcCCceEEEEeCCCCH--------------HHHHHHhcccCCCC--CCCE
Q 046314 257 HLHKQVVSLLLGERIEMGGPNIPAYTLER-LRRTKVFFVLDDVSKF--------------EQLKYFVGWLHGFC--PGSR 319 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--------------~~l~~l~~~~~~~~--~gsr 319 (1137)
+++.+-. . ++...+..+-++ -+--++++.+|.++.. +.+.+|+..++... .|-.
T Consensus 186 ----~liGehV----G-dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ----ELIGEHV----G-DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred ----HHHHHHh----h-hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 0111100 0 111112222222 2356889999987432 22556666555433 4544
Q ss_pred EEEEeCChhhHHhh---CCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCC
Q 046314 320 IVVTTRDKQVLRKH---GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGN 383 (1137)
Q Consensus 320 IIiTTR~~~v~~~~---~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~ 383 (1137)
.|-.|-...++... .... -++..-.+++|-.+++..++-+-..+.+.. .+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEe--EIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEE--EIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhh--eeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 55566555544321 1222 678888899999999999985443332211 34456666654
No 225
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.019 Score=65.38 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=82.6
Q ss_pred CccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC---------------------CceEEEee
Q 046314 186 GLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF---------------------EGNCFIEN 244 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~ 244 (1137)
.++|-+....++..+......-...+.+.|++|+||||+|.++++.+.... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 467777778887777753333344699999999999999999999875332 1222221
Q ss_pred ccchhccCcC---hHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcccCCCCCCCE
Q 046314 245 VREEIENGVG---LVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE--QLKYFVGWLHGFCPGSR 319 (1137)
Q Consensus 245 ~~~~~s~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsr 319 (1137)
.+.... .....+++....... ...++.-++++|+++... ...++...........+
T Consensus 81 ----~s~~~~~~i~~~~vr~~~~~~~~~---------------~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 81 ----PSDLRKIDIIVEQVRELAEFLSES---------------PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred ----ccccCCCcchHHHHHHHHHHhccC---------------CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 111111 122222222221100 003556789999998743 35666666665667888
Q ss_pred EEEEeCChh-hHHhhCCCCccEEEEccCCHHHHH
Q 046314 320 IVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGL 352 (1137)
Q Consensus 320 IIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~ 352 (1137)
+|++|.+.. +..... .....+.+.+.+..+..
T Consensus 142 ~il~~n~~~~il~tI~-SRc~~i~f~~~~~~~~i 174 (325)
T COG0470 142 FILITNDPSKILPTIR-SRCQRIRFKPPSRLEAI 174 (325)
T ss_pred EEEEcCChhhccchhh-hcceeeecCCchHHHHH
Confidence 888887443 322111 12225666664444433
No 226
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.013 Score=71.59 Aligned_cols=118 Identities=23% Similarity=0.284 Sum_probs=75.7
Q ss_pred CCCccchhhHHHHHHHhhccC------C-CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChH
Q 046314 184 SKGLVGLNSRIECIKSLLCVG------F-PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~ 256 (1137)
...++|.+..++.+.+.+... . .........|+.|+|||.||++++..+-+.=+.-+-+ ++.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-----------DMS 558 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-----------DMS 558 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-----------chH
Confidence 356899999999998887532 1 2356788899999999999999998775433333322 222
Q ss_pred -HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCce-EEEEeCCCC--HHHHHHHhcccC
Q 046314 257 -HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKV-FFVLDDVSK--FEQLKYFVGWLH 312 (1137)
Q Consensus 257 -~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~--~~~l~~l~~~~~ 312 (1137)
...+.-.+.+.+.....-+.+.--.+-+..++++| +|.||+|+. ++-++.|+.-++
T Consensus 559 Ey~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 559 EYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 23334455555554443222222334677788887 777899975 455666655554
No 227
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.012 Score=66.15 Aligned_cols=84 Identities=11% Similarity=0.163 Sum_probs=48.9
Q ss_pred EEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChh
Q 046314 292 FFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEH 368 (1137)
Q Consensus 292 LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~ 368 (1137)
++|+|+++.. .....++..+.....+..+|++|.+.. +.... ......+.+.+++.+++.+.+..... ...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti-~SRc~~~~~~~~~~~~~~~~L~~~~~----~~~- 189 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI-KSRCRKMVLPAPSHEEALAYLRERGV----AEP- 189 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHH-HHHhhhhcCCCCCHHHHHHHHHhcCC----CcH-
Confidence 4456888653 334444444443345677777777755 33221 22233799999999999988866421 111
Q ss_pred HHHHHHHHHHHhCCCchh
Q 046314 369 LTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 369 ~~~l~~~iv~~~~G~PLa 386 (1137)
. ..+..++|-|+.
T Consensus 190 -~----~~l~~~~g~p~~ 202 (325)
T PRK08699 190 -E----ERLAFHSGAPLF 202 (325)
T ss_pred -H----HHHHHhCCChhh
Confidence 1 123568898964
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.027 Score=63.61 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=28.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
+.++|+++|.+|+||||++..++..+..+-..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 468999999999999999999998775443334444
No 229
>PRK08118 topology modulation protein; Reviewed
Probab=96.62 E-value=0.0053 Score=62.20 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=26.2
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhc---cCCceEE
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSN---EFEGNCF 241 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~ 241 (1137)
.|.|+|++|+||||||+.+++++.- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999997643 4665554
No 230
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.066 Score=63.09 Aligned_cols=188 Identities=18% Similarity=0.223 Sum_probs=105.9
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc----CC--ceEEEeeccchhccCcC
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE----FE--GNCFIENVREEIENGVG 254 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~--~~~~~~~~~~~~s~~~~ 254 (1137)
|...+++||-+.-.+.|...+..+. -...-...|+-|+||||+||-++..+--. .+ +.|..+ .+ +.....
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~-I~~g~~ 87 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KE-INEGSL 87 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hh-hhcCCc
Confidence 4456788999999999999886442 23456689999999999999999854211 11 112111 00 000000
Q ss_pred hHHHHHHHHHHHhCccccCCCCCccHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCCh
Q 046314 255 LVHLHKQVVSLLLGERIEMGGPNIPAYTLERL-----RRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDK 327 (1137)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 327 (1137)
+.-+.-+. ....+.+-++.+.+.. +++.=+.|+|.|+.. ..+.+|+..+....+.-..|..|.+.
T Consensus 88 ~DviEiDa--------ASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 88 IDVIEIDA--------ASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred ccchhhhh--------hhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 00000000 0011222233333333 244457889999875 44888888776555666666666655
Q ss_pred h-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCC
Q 046314 328 Q-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGN 383 (1137)
Q Consensus 328 ~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~ 383 (1137)
+ +... -....+.|..+.++.++-...+..-+-......+ ++...-|++..+|.
T Consensus 160 ~Kip~T-IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e--~~aL~~ia~~a~Gs 213 (515)
T COG2812 160 QKIPNT-ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE--EDALSLIARAAEGS 213 (515)
T ss_pred CcCchh-hhhccccccccCCCHHHHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCC
Confidence 4 3221 1223347999999999888888776644332222 33334455555553
No 231
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.61 E-value=0.0044 Score=64.16 Aligned_cols=122 Identities=22% Similarity=0.285 Sum_probs=59.0
Q ss_pred hhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh--hccCCceEEEeeccchhccCcCh--HHHH------
Q 046314 190 LNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV--SNEFEGNCFIENVREEIENGVGL--VHLH------ 259 (1137)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~F~~~~~~~~~~~~~s~~~~~--~~l~------ 259 (1137)
+..+-....++|. +..+|.+.|++|.|||.||.+.+-+. .++|+..++....-+ ..+..+. ..+.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~-~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE-AGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S---TT----SS---------TT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC-CccccccCCCCHHHHHHHH
Confidence 3344444444443 45689999999999999999888643 567887777654322 1111110 0111
Q ss_pred ----HHHHHHHhCccccCCCCCccHHHH----------HhhcCC---ceEEEEeCCCC--HHHHHHHhcccCCCCCCCEE
Q 046314 260 ----KQVVSLLLGERIEMGGPNIPAYTL----------ERLRRT---KVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRI 320 (1137)
Q Consensus 260 ----~~ll~~l~~~~~~~~~~~~~~~l~----------~~L~~k---r~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrI 320 (1137)
.+.+..+. .....+.+. ..++++ ..+||+|++.+ .+++..++. ..+.||||
T Consensus 80 ~~p~~d~l~~~~-------~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~ski 149 (205)
T PF02562_consen 80 LRPIYDALEELF-------GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKI 149 (205)
T ss_dssp THHHHHHHTTTS--------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EE
T ss_pred HHHHHHHHHHHh-------ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEE
Confidence 11111111 111111111 223333 46999999976 456777765 35799999
Q ss_pred EEEeCC
Q 046314 321 VVTTRD 326 (1137)
Q Consensus 321 IiTTR~ 326 (1137)
|++--.
T Consensus 150 i~~GD~ 155 (205)
T PF02562_consen 150 IITGDP 155 (205)
T ss_dssp EEEE--
T ss_pred EEecCc
Confidence 998644
No 232
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.61 E-value=0.00086 Score=82.65 Aligned_cols=131 Identities=19% Similarity=0.212 Sum_probs=71.6
Q ss_pred CCcEEEecCCCcc--ccCcccc-CCCCCcEEecccccccc-cccccccCCCCCcEecccccccccccccccCCCCCccee
Q 046314 730 NITKLNLCDTAIE--EVPSSVE-CLTNLEYLYINRCKRLK-RVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYI 805 (1137)
Q Consensus 730 ~L~~L~L~~~~i~--~lp~~i~-~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 805 (1137)
+|++|+++|...- ..|..++ .||+|+.|.+++-.+.. .+..-..++++|..||+|++..... .+++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 6677777664322 2233333 35677777766643322 1222234566666666666553332 455666666666
Q ss_pred cccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc-------cccCCCCCCCEEEccCCCCCc
Q 046314 806 GAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP-------EEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 806 ~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp-------~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
.+.+-.+..-.... .+-++++|+.||+|.......+ +.-..||.|+.||.|++.+..
T Consensus 201 ~mrnLe~e~~~~l~---------~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLI---------DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHH---------HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 65554433321110 2345778888888876444322 223457888888888876653
No 233
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.041 Score=67.45 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=40.3
Q ss_pred CCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 183 SSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.-+.++||+.|+.++.+.|.....+-+ .++|.+|+|||++|.-++.++..
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~ 217 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVN 217 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhc
Confidence 446799999999999999975443322 36899999999999999998743
No 234
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.57 E-value=0.29 Score=55.90 Aligned_cols=106 Identities=11% Similarity=0.038 Sum_probs=65.7
Q ss_pred CceEEEEeCCCCH--------HHHHHHhcccCCCCCCCEEEEEeCChhhHH----hhCCCCccEEEEccCCHHHHHHHHH
Q 046314 289 TKVFFVLDDVSKF--------EQLKYFVGWLHGFCPGSRIVVTTRDKQVLR----KHGVNDEYVYEVERLNEDEGLELFY 356 (1137)
Q Consensus 289 kr~LlVLDdv~~~--------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~----~~~~~~~~~~~v~~L~~~ea~~Lf~ 356 (1137)
+|=+||+||.... +.+..++..+- ...=.+||++|-+....+ .+.....+.+.+.-.+.+.|.++..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 4678999998331 11222222221 234568999988765433 3322233478899999999999999
Q ss_pred hhcccCCCC-------------C-----hhHHHHHHHHHHHhCCCchhHHHHhhhhc
Q 046314 357 KYAFRQSHC-------------P-----EHLTALSKKAVRYAEGNPLALEVLGSSLH 395 (1137)
Q Consensus 357 ~~a~~~~~~-------------~-----~~~~~l~~~iv~~~~G~PLal~~lg~~L~ 395 (1137)
.+.-..... . ....+-....++..||--.=|..+++.++
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 887443110 0 12233446778888888888888888876
No 235
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.56 E-value=0.00094 Score=69.45 Aligned_cols=188 Identities=17% Similarity=0.167 Sum_probs=99.7
Q ss_pred CCceEEEEecCCCC-----CCCCCC-cccccceeecccCCch----hhhhhh-----hhccccceeEEecCCCCCCCccC
Q 046314 591 EKLKYLHLHKYPLR-----TLPENF-KPKNLIELNLPFSKIV----QIWEEK-----RYVKAFKLKSINLSHSQYLIRIP 655 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~-----~lp~~~-~l~~L~~L~L~~n~i~----~l~~~~-----~~~~l~~L~~L~Ls~n~~~~~~p 655 (1137)
..+..++|+||.+. .+...+ +-++|+..+++.-... .++... ..++||+|+..+||.|-+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 46777888888765 122222 4566776666643211 122211 23566778888888777665555
Q ss_pred C-----CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCc----
Q 046314 656 D-----PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPR---- 726 (1137)
Q Consensus 656 ~-----~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~---- 726 (1137)
. ++..++|++|.|++|..-..-..-++. -|.+ |..|++.. .-+.|++.++..+ .+...|.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~nKKaa------~kp~Le~vicgrN-Rlengs~~~~a 178 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYNKKAA------DKPKLEVVICGRN-RLENGSKELSA 178 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHHhhhc------cCCCceEEEeccc-hhccCcHHHHH
Confidence 3 366777777777776432111111110 0111 11112111 1234555555442 2333321
Q ss_pred ----ccCCCcEEEecCCCcccc------CccccCCCCCcEEeccccccccc----ccccccCCCCCcEecccccccc
Q 046314 727 ----ISGNITKLNLCDTAIEEV------PSSVECLTNLEYLYINRCKRLKR----VSTSICKLKSLIWLCLNECLNL 789 (1137)
Q Consensus 727 ----~~~~L~~L~L~~~~i~~l------p~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~~~~ 789 (1137)
+-.+|+.+.+..|.|..= -..+..+.+|+.|||.+|.++.. +...++..+.|++|.+..|-..
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 224778888888887621 12345678888888888876543 2233445566777777777544
No 236
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.55 E-value=0.032 Score=69.80 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=39.8
Q ss_pred CCCccchhhHHHHHHHhhccC------CCC-eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 184 SKGLVGLNSRIECIKSLLCVG------FPD-VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...++|.+..++.|...+... .+. ...+.++|++|+|||++|+.++..+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999998887621 112 45789999999999999999998774
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.0064 Score=68.36 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=29.0
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.-+.++|.+|+|||+||.++++.+..+--.++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66999999999999999999998766544566654
No 238
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.48 E-value=0.0025 Score=71.32 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=41.4
Q ss_pred CCccchhhHHHHHHHhhccC----CCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 185 KGLVGLNSRIECIKSLLCVG----FPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
++++|+++.++++.+++... ....++++++|++|.||||||+++++.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 37999999999999888642 23468899999999999999999998664
No 239
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.045 Score=66.62 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=104.3
Q ss_pred CCCCCccchhhHHHHHHHhhc---c-------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhcc
Q 046314 182 DSSKGLVGLNSRIECIKSLLC---V-------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIEN 251 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~ 251 (1137)
...+++.|.|+..++|++... . +..-++=|.++|++|.|||-||++++-...=- |+. ++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-----F~s-----vSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFS-----VSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-----eee-----ech
Confidence 345788999887777766543 1 22336779999999999999999998754322 222 110
Q ss_pred CcChHHHHHHHHHHHhCccccCCCCCcc-HHHHHhhcCCceEEEEeCCCC-----------------HHHHHHHhcccCC
Q 046314 252 GVGLVHLHKQVVSLLLGERIEMGGPNIP-AYTLERLRRTKVFFVLDDVSK-----------------FEQLKYFVGWLHG 313 (1137)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~-----------------~~~l~~l~~~~~~ 313 (1137)
. ++.....+. +...+ +.+...-.+.+++|.+|+++. ...+..|+...+.
T Consensus 378 S--------EFvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 378 S--------EFVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred H--------HHHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 0 011110000 00111 111122234566777776632 1126677777776
Q ss_pred CCCCCEEE--EEeCChhhHHh-----hCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 314 FCPGSRIV--VTTRDKQVLRK-----HGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 314 ~~~gsrII--iTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
+..+..|| -+|...+++.. -..+. .+.++..+.....++|.-|+.+.... .+..++++ ++...-|.+=|
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr--~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFDR--QIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCcccc--ceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 66554343 34544444322 12444 78999999999999999998655443 34456666 88888888854
No 240
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.45 E-value=0.044 Score=69.11 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=41.9
Q ss_pred CCccchhhHHHHHHHhhcc----CCCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 185 KGLVGLNSRIECIKSLLCV----GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
.+.+|.+.-.++|.++|.. +.....++.++|++|+||||+|+.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4589999999999888763 122356899999999999999999998776554
No 241
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.43 E-value=0.0012 Score=68.58 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=50.4
Q ss_pred CCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC------cccccCCCCCCCEEEccCCCCCc
Q 046314 798 NLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA------IPEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 798 ~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~------lp~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
+-|.|+......|.+...|...... .+..-.+|+.+.+..|.|.. +-..+..+.+|+.|||..|-|+.
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~------~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAA------LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHH------HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 3456677777777666555422110 12223567777777777763 12244567788888888887764
Q ss_pred CC------CCCCcccccceeccccc
Q 046314 872 LP------SIPELPPSLKWLQASNC 890 (1137)
Q Consensus 872 lp------~~~~l~~~L~~L~l~~c 890 (1137)
.. .++..+ .|+.|.+.+|
T Consensus 229 ~gS~~La~al~~W~-~lrEL~lnDC 252 (388)
T COG5238 229 EGSRYLADALCEWN-LLRELRLNDC 252 (388)
T ss_pred hhHHHHHHHhcccc-hhhhccccch
Confidence 33 233334 5677777776
No 242
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.42 E-value=0.016 Score=61.47 Aligned_cols=35 Identities=34% Similarity=0.431 Sum_probs=29.7
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
-.++|+|..|.|||||++.+.......|+.+..+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 35789999999999999999999999996665553
No 243
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.39 E-value=0.035 Score=67.24 Aligned_cols=50 Identities=28% Similarity=0.496 Sum_probs=39.6
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
|...++++|.+..++.+...+... ....|.|+|.+|+|||++|+.+++..
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344567999999999998876432 34567899999999999999998753
No 244
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.36 E-value=0.02 Score=57.55 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=27.4
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
++.|+|.+|.||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999998766555566654
No 245
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.34 E-value=0.011 Score=66.64 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=57.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCC-ceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCC------ccH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFE-GNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPN------IPA 280 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~------~~~ 280 (1137)
-+.++|+|.+|.|||||++.+++.+..+.+ ..+++.-+.+ ....+.++.+.+...+.....+..... ...
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE---R~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~ 209 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE---RPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVL 209 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC---CCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998866553 3334443433 345666777777665443221111110 111
Q ss_pred HHHHhh--cCCceEEEEeCCCCHHH
Q 046314 281 YTLERL--RRTKVFFVLDDVSKFEQ 303 (1137)
Q Consensus 281 ~l~~~L--~~kr~LlVLDdv~~~~~ 303 (1137)
...+++ ++++++||+|++.....
T Consensus 210 ~~Ae~f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 210 ERAKRLVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHHHHHHcCCCEEEEEeCcHHHHH
Confidence 112222 48999999999965544
No 246
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.015 Score=62.49 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=29.5
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh----hccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV----SNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~~ 243 (1137)
-|+|.++|++|.|||+|.+++++++ .++|..+..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 4899999999999999999999964 45666666554
No 247
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.31 E-value=0.0027 Score=62.35 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEccCCChhhHHHHHHHHHh
Q 046314 211 VGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
|.++|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 248
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.30 E-value=0.0032 Score=60.04 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=21.6
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 249
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.031 Score=66.02 Aligned_cols=74 Identities=30% Similarity=0.303 Sum_probs=48.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLR 287 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 287 (1137)
..-|.|.|..|+|||+||+++++.+... ..+++..+.-...+...++.+|+.+-. .+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~~----------------vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLNN----------------VFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHHH----------------HHHHHHh
Confidence 4678999999999999999999988633 333333222111223335555554422 2255667
Q ss_pred CCceEEEEeCCC
Q 046314 288 RTKVFFVLDDVS 299 (1137)
Q Consensus 288 ~kr~LlVLDdv~ 299 (1137)
..+-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 788999999994
No 250
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0027 Score=66.45 Aligned_cols=83 Identities=24% Similarity=0.299 Sum_probs=55.4
Q ss_pred cCCCCCCCEEeecCC--CCCC-cccccCCCCCCCEEEccCCCCCcCC---CCCCcccccceeccccccccccC------C
Q 046314 830 LSGLSSLNWLNLNNC--ALTA-IPEEIGCLPSLEWLELRGNNFESLP---SIPELPPSLKWLQASNCKRLQFL------P 897 (1137)
Q Consensus 830 l~~l~~L~~L~Ls~n--~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp---~~~~l~~~L~~L~l~~c~~L~~l------p 897 (1137)
+..+++|+.|.++.| .++. ++.-...+|+|++|+|++|++..+. .+..+. +|..|++.+|+-.+.- -
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~-nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE-NLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc-chhhhhcccCCccccccHHHHHH
Confidence 345678888888888 4443 5555556699999999999877543 556666 7888888888755411 1
Q ss_pred CCCCCcceeecccccc
Q 046314 898 EIPSRPEELDASLLQK 913 (1137)
Q Consensus 898 ~lp~~L~~L~~~~c~~ 913 (1137)
.+.++|+.|+-.++..
T Consensus 140 ~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHhhhhccccccccCC
Confidence 2446677766655544
No 251
>PRK14974 cell division protein FtsY; Provisional
Probab=96.25 E-value=0.11 Score=58.43 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
++.+|+++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998877554
No 252
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.25 E-value=0.026 Score=70.05 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=81.3
Q ss_pred CccchhhHHHHHHHhhccC----------CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcCh
Q 046314 186 GLVGLNSRIECIKSLLCVG----------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGL 255 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~ 255 (1137)
++.|.+...+++.+.+... ..-.+-|.++|++|.|||++|+.++.+....|- .+. ..+
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~~~-------- 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-GSD-------- 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-hHH--------
Confidence 4556665555555443211 111345999999999999999999887654431 111 100
Q ss_pred HHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcccCCCC--CC
Q 046314 256 VHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE----------------QLKYFVGWLHGFC--PG 317 (1137)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~g 317 (1137)
+... ..+. ....+...+.......+.+|++|+++... .+..++..+..+. .+
T Consensus 221 --~~~~----~~g~----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 --FVEM----FVGV----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred --hHHh----hhcc----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 0000 0000 00001111122233467899999985531 1334443333332 23
Q ss_pred CEEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhccc
Q 046314 318 SRIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYAFR 361 (1137)
Q Consensus 318 srIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~ 361 (1137)
.-+|.||...+.+... ..+. .+.++..+.++-.+++..+..+
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr--~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDR--QVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccce--EEEcCCCCHHHHHHHHHHHhhc
Confidence 3445577665533221 2333 7889999999999998887644
No 253
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.034 Score=64.71 Aligned_cols=53 Identities=28% Similarity=0.369 Sum_probs=42.3
Q ss_pred CCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
..++=|++..+++|.+++.. +-.-++-|.++|++|.|||.||++++.+..--|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 46788999999999887753 112467799999999999999999998775443
No 254
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.013 Score=63.70 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=28.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
+..-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 456788999999999999999999988433344444
No 255
>PRK10867 signal recognition particle protein; Provisional
Probab=96.22 E-value=0.053 Score=63.14 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
.+.+|.++|.+|+||||+|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 47899999999999999999998877655
No 256
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.21 E-value=0.065 Score=60.80 Aligned_cols=48 Identities=23% Similarity=0.173 Sum_probs=38.6
Q ss_pred CCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHH
Q 046314 184 SKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.+.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 356999999999988877644344456889999999999999999753
No 257
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.20 E-value=0.058 Score=65.89 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 183 SSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+.++|....++++.+.+..-.....-|.|+|..|+|||++|+.+++.-.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 456899999999998887754333445678999999999999999988543
No 258
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.20 E-value=0.0066 Score=59.49 Aligned_cols=47 Identities=28% Similarity=0.240 Sum_probs=32.9
Q ss_pred cchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 188 VGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
||....++++.+.+..-.....-|.|+|..|.||+++|+.++..-..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 56677777777766543334456789999999999999999875443
No 259
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.16 E-value=0.041 Score=56.93 Aligned_cols=118 Identities=25% Similarity=0.290 Sum_probs=70.0
Q ss_pred CCCCccchhhHHHHHHHhhc--cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHH
Q 046314 183 SSKGLVGLNSRIECIKSLLC--VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHK 260 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~ 260 (1137)
.-..++|.|...+.|.+--. ...-...-|.+||.-|.|||.|++++.+.+..+...-+=+. . .+-.++..+..
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~---k--~dl~~Lp~l~~ 132 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD---K--EDLATLPDLVE 132 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc---H--HHHhhHHHHHH
Confidence 34568999988888765321 11123456889999999999999999999988877633221 1 11111111111
Q ss_pred HHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCC---CHHHHHHHhcccCC---CCCCCEEEEEeCCh
Q 046314 261 QVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVS---KFEQLKYFVGWLHG---FCPGSRIVVTTRDK 327 (1137)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~---~~~~l~~l~~~~~~---~~~gsrIIiTTR~~ 327 (1137)
+ -+...+|++|..||.. ..+..+.|...+.. ..|...++..|.++
T Consensus 133 ~----------------------Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 133 L----------------------LRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred H----------------------HhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1 1235789999999983 23345555444432 22445555555544
No 260
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.15 E-value=0.062 Score=60.91 Aligned_cols=46 Identities=26% Similarity=0.192 Sum_probs=35.1
Q ss_pred ccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 187 LVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+||....++++.+.+..-...-.-|.|+|..|+||+++|+.++..-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4777777777777665433344568899999999999999998753
No 261
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.14 Score=58.68 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.4
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 262
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.05 E-value=0.048 Score=54.12 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=60.6
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcccc----CCCC--------
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIE----MGGP-------- 276 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~----~~~~-------- 276 (1137)
.+|-|++..|-||||+|...+-+...+=-.+.++..+.. ....+-....+.+ ..+.-.... ....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg--~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG--GWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC--CCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 467888899999999999998877665445555443322 0112222222222 000000000 0000
Q ss_pred --CccHHHHHhhcCCc-eEEEEeCCCCHH-----HHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 277 --NIPAYTLERLRRTK-VFFVLDDVSKFE-----QLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 277 --~~~~~l~~~L~~kr-~LlVLDdv~~~~-----~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
...+..++.+.... =|+|||++...- ..+.+...+....++..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11222234444433 499999984331 12333333333446789999999865
No 263
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.04 E-value=0.017 Score=61.90 Aligned_cols=48 Identities=27% Similarity=0.379 Sum_probs=37.4
Q ss_pred HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 196 CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555444455689999999999999999999987766667778876
No 264
>PRK06696 uridine kinase; Validated
Probab=96.02 E-value=0.012 Score=62.97 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=34.6
Q ss_pred hhhHHHHHHHhhcc-CCCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 190 LNSRIECIKSLLCV-GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 190 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
|++.+++|.+.+.. ..+.+.+|+|.|.+|+||||+|+.++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45555565555432 34568899999999999999999999987544
No 265
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.00 E-value=0.015 Score=58.83 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=42.8
Q ss_pred EEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcC--
Q 046314 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRR-- 288 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~-- 288 (1137)
+.|.|.+|+|||++|.++... ....+.++. .....+. .+++.+..-...........+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a-----t~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA-----TAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE-----ccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 679999999999999999765 234566665 2233333 23333332211112222222222333444422
Q ss_pred CceEEEEeCC
Q 046314 289 TKVFFVLDDV 298 (1137)
Q Consensus 289 kr~LlVLDdv 298 (1137)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2347899987
No 266
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.99 E-value=0.075 Score=61.92 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=24.1
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+.++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 368999999999999999999988764
No 267
>PRK04296 thymidine kinase; Provisional
Probab=95.98 E-value=0.0095 Score=61.84 Aligned_cols=110 Identities=17% Similarity=0.066 Sum_probs=59.8
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcccc--C-CCCCccHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIE--M-GGPNIPAYTLER 285 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~--~-~~~~~~~~l~~~ 285 (1137)
.++.|+|..|.||||+|..++.+...+-..++++... .....+.. .+++.+...... . ...+..+.+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~---~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA---IDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc---ccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 4788999999999999999999886655444444210 01111111 122222110000 0 11112222222
Q ss_pred hcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 286 LRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
..++.-+||+|.+.. .+++..+...+ ...|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 223456899999965 34455555432 246889999999843
No 268
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.0074 Score=58.41 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=29.5
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhcc-CCce-EEEeecc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGN-CFIENVR 246 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~-~~~~~~~ 246 (1137)
.--|+|.||+|+||||+++.+++.++.. |... ++...++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 3468999999999999999999988766 6533 3333333
No 269
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.97 E-value=0.019 Score=64.01 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=28.8
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.+-+.++|..|+|||.||.++++.+..+-..+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 457889999999999999999998865544455553
No 270
>PRK07667 uridine kinase; Provisional
Probab=95.91 E-value=0.014 Score=60.88 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=31.8
Q ss_pred HHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 195 ECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
+++...+..-.+...+|||.|.+|.||||+|+.+...+...
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 44455554444566899999999999999999999977543
No 271
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.89 E-value=0.048 Score=59.91 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
.+.++|+++|++|+||||++..++..++..-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4578999999999999999999998776553344444
No 272
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.88 E-value=0.018 Score=58.20 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=33.3
Q ss_pred ccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 187 LVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+||.+..++++.+.+..-.....-|.|+|..|.||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788888888877765433333556799999999999999998843
No 273
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.87 E-value=0.016 Score=61.43 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=35.3
Q ss_pred hhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 200 LLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 200 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
+|..+-..-+++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34434455689999999999999999999987766667788886
No 274
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.83 E-value=0.021 Score=60.84 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=37.3
Q ss_pred HHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 195 ECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
..|..+|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455566544456789999999999999999999988766555667765
No 275
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.13 Score=59.14 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..++|.++|..|+||||.+..++.++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999988764
No 276
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.81 E-value=0.4 Score=55.63 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=27.7
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
...+|.++|.+|+||||+|..++..++.+-..+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 468999999999999999999988765543233333
No 277
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.79 E-value=0.035 Score=59.57 Aligned_cols=48 Identities=31% Similarity=0.371 Sum_probs=35.9
Q ss_pred HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC------CceEEEe
Q 046314 196 CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF------EGNCFIE 243 (1137)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 243 (1137)
.|..+|..+-..-.++.|.|.+|+|||+||.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44455544445568999999999999999999987665444 5667776
No 278
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.74 E-value=0.038 Score=63.11 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=64.5
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE-eeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI-ENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL 286 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 286 (1137)
...|.|.|+.|.||||+++.+...+.......++. .+-.+ .........+...+.........+.++..|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E---------~~~~~~~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE---------YVHRNKRSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh---------hhccCccceEEccccCCCCcCHHHHHHHhh
Confidence 46899999999999999999998876655554443 21111 000000000000111112234456678888
Q ss_pred cCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 287 RRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 287 ~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
+..+=.|++|.+.+.+.....+.. ...|..++.|.-...
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNS 231 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCC
Confidence 899999999999988876654332 124555555555433
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.52 Score=53.35 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=29.3
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
...++++++|+.|+||||++..++..+..+-..+.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34689999999999999999999887654434455554
No 280
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.74 E-value=0.028 Score=58.47 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=27.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
+++|.++|+.|+||||.+.+++.+...+-..+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 478999999999999999999987766644445553
No 281
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.73 E-value=0.05 Score=56.15 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.0
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998866
No 282
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.71 E-value=0.13 Score=56.04 Aligned_cols=145 Identities=24% Similarity=0.215 Sum_probs=82.0
Q ss_pred CCCCccchhhHHHHHHHhhccC--CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchh-ccCcChHHHH
Q 046314 183 SSKGLVGLNSRIECIKSLLCVG--FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEI-ENGVGLVHLH 259 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~-s~~~~~~~l~ 259 (1137)
....++|-..+.+++..++... -++..-|.|+|+.|.|||+|......+ .+.|.....+....... .+...+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4567999999999999988632 234567889999999999998877666 44444444444333211 1122233444
Q ss_pred HHHHHHHhCccc-cCCCCCccHHHHHhhc------CCceEEEEeCCCCH----HH--HHHHhc-ccCCCCCCCEEEEEeC
Q 046314 260 KQVVSLLLGERI-EMGGPNIPAYTLERLR------RTKVFFVLDDVSKF----EQ--LKYFVG-WLHGFCPGSRIVVTTR 325 (1137)
Q Consensus 260 ~~ll~~l~~~~~-~~~~~~~~~~l~~~L~------~kr~LlVLDdv~~~----~~--l~~l~~-~~~~~~~gsrIIiTTR 325 (1137)
.++..++..... ..+-.+..+.+...|+ .-++++|+|.++-. .| +-.+.. .-....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 444433332221 1233333444455553 34689999887543 22 222222 1122346677789999
Q ss_pred Chh
Q 046314 326 DKQ 328 (1137)
Q Consensus 326 ~~~ 328 (1137)
-.-
T Consensus 181 ld~ 183 (408)
T KOG2228|consen 181 LDI 183 (408)
T ss_pred ccH
Confidence 643
No 283
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.031 Score=64.96 Aligned_cols=129 Identities=19% Similarity=0.277 Sum_probs=77.9
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHH-Hh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTL-ER 285 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~-~~ 285 (1137)
-+.-|.+||++|.|||-||+++++...-.|-.+ . +. +++....++. +..++.+- +.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV------K-------GP-----ELlNkYVGES-----ErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISV------K-------GP-----ELLNKYVGES-----ERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEee------c-------CH-----HHHHHHhhhH-----HHHHHHHHHHh
Confidence 356688999999999999999999887766321 1 11 1222211111 11121112 22
Q ss_pred hcCCceEEEEeCCCCH-------------HHHHHHhcccCCCC--CCCEEEEEeCChhhH-----HhhCCCCccEEEEcc
Q 046314 286 LRRTKVFFVLDDVSKF-------------EQLKYFVGWLHGFC--PGSRIVVTTRDKQVL-----RKHGVNDEYVYEVER 345 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~~--~gsrIIiTTR~~~v~-----~~~~~~~~~~~~v~~ 345 (1137)
-..-+++|.||.++.. ..+..|+..++... .|--||-.|-.+++. +--..+. ..-|+.
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk--~LyV~l 678 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDK--LLYVGL 678 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCc--eeeecC
Confidence 2357899999998431 12555665555332 455566555444432 2223455 889999
Q ss_pred CCHHHHHHHHHhhcc
Q 046314 346 LNEDEGLELFYKYAF 360 (1137)
Q Consensus 346 L~~~ea~~Lf~~~a~ 360 (1137)
.+.+|-.+++....-
T Consensus 679 Pn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 679 PNAEERVAILKTITK 693 (802)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999988875
No 284
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.056 Score=64.53 Aligned_cols=159 Identities=23% Similarity=0.289 Sum_probs=89.8
Q ss_pred CCCccchhhHHHHHHHhhccC----CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHH
Q 046314 184 SKGLVGLNSRIECIKSLLCVG----FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLH 259 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~ 259 (1137)
..+-+|.+.-.++|.++|.-. .-+-.+++++|++|+|||.|++.+++.+...|-... +-.+++ ..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrD----EA------ 390 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRD----EA------ 390 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCcccc----HH------
Confidence 356799999999999988632 233579999999999999999999999988875432 222222 11
Q ss_pred HHHHHHHhCccccCCC---CCccHHHHHhhcCCceEEEEeCCCCHHH------HHHHhcccC-----CCC--------CC
Q 046314 260 KQVVSLLLGERIEMGG---PNIPAYTLERLRRTKVFFVLDDVSKFEQ------LKYFVGWLH-----GFC--------PG 317 (1137)
Q Consensus 260 ~~ll~~l~~~~~~~~~---~~~~~~l~~~L~~kr~LlVLDdv~~~~~------l~~l~~~~~-----~~~--------~g 317 (1137)
++-+.....-+ ...++. -...+.+.=+++||.++.... ..+|+.-++ .|. .=
T Consensus 391 -----EIRGHRRTYIGamPGrIiQ~-mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 391 -----EIRGHRRTYIGAMPGKIIQG-MKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred -----HhccccccccccCChHHHHH-HHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 11111111100 111111 122345667889999854211 222222221 010 12
Q ss_pred CEE-EEEeCCh-hhHHhhCCCCccEEEEccCCHHHHHHHHHhhc
Q 046314 318 SRI-VVTTRDK-QVLRKHGVNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 318 srI-IiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
|.| .|||-+. +-....-.+.-.++++.+-+.+|-++.-.+|.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444 4555442 10011112233389999999999888877775
No 285
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.069 Score=64.67 Aligned_cols=155 Identities=21% Similarity=0.229 Sum_probs=88.2
Q ss_pred CCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCc
Q 046314 185 KGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGV 253 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~ 253 (1137)
.+..|.+...+.+.+.... +-...+.+.++|++|.|||.||+++++.....|-....- + .
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~-l---- 312 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----E-L---- 312 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----H-H----
Confidence 4566666666666554431 123466899999999999999999999766655432211 0 0
Q ss_pred ChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcccCCCCCCC--
Q 046314 254 GLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLHGFCPGS-- 318 (1137)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~~~gs-- 318 (1137)
+++..++ ....+.+.+....+..+..|.+|.++.. ..+..++..+......+
T Consensus 313 ---------~sk~vGe----sek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 313 ---------LSKWVGE----SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred ---------hccccch----HHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 0000000 0111111223333577899999998331 22444444443233333
Q ss_pred EEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhcccCC
Q 046314 319 RIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYAFRQS 363 (1137)
Q Consensus 319 rIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~ 363 (1137)
.||-||-........ ..+. .+.++..+.++..+.|..+.-...
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~--~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDR--LIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred EEEecCCCccccCHhhcccCccce--EeecCCCCHHHHHHHHHHHhcccC
Confidence 344444443322211 2344 899999999999999999985433
No 286
>PHA00729 NTP-binding motif containing protein
Probab=95.69 E-value=0.021 Score=59.95 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+...|.|.|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999998764
No 287
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.63 E-value=0.034 Score=59.28 Aligned_cols=124 Identities=16% Similarity=0.118 Sum_probs=71.1
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEee-ccchhccCcChHHHHHHHHHHHhCccc-------cCCCC-C
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIEN-VREEIENGVGLVHLHKQVVSLLLGERI-------EMGGP-N 277 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~-~~~~~s~~~~~~~l~~~ll~~l~~~~~-------~~~~~-~ 277 (1137)
+-.++||+|..|.||||+|+.+..-.......+.|-.. +.. .+ .....+...+++..+..... +.++. .
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~-~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK-LS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh-cc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45689999999999999999998755544443333210 111 11 11223344455555443221 12222 2
Q ss_pred ccHHHHHhhcCCceEEEEeCC------CCHHHHHHHhcccCCCCCCCEEEEEeCChhhHHhh
Q 046314 278 IPAYTLERLRRTKVFFVLDDV------SKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKH 333 (1137)
Q Consensus 278 ~~~~l~~~L~~kr~LlVLDdv------~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 333 (1137)
..-.+.+.|.-++-++|.|.- .-..|+-.|+..+. ...|-..+..|-|-.+....
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 233456778889999999975 22344444444332 23466677778887776654
No 288
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.63 E-value=0.041 Score=59.41 Aligned_cols=47 Identities=30% Similarity=0.337 Sum_probs=33.8
Q ss_pred HHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc------CCceEEEe
Q 046314 197 IKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE------FEGNCFIE 243 (1137)
Q Consensus 197 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 243 (1137)
|..+|..+-..-.++.|.|.+|+|||++|.+++...... -..++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 444554444556899999999999999999997643222 35677776
No 289
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.074 Score=63.50 Aligned_cols=173 Identities=23% Similarity=0.255 Sum_probs=95.9
Q ss_pred CCCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC---ceEEEeeccch
Q 046314 182 DSSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE---GNCFIENVREE 248 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~ 248 (1137)
....+.-|.|+..+++.+.++. +..-++-|.++|++|.|||.||++++-...-.|- +.-|+.-.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf--- 223 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF--- 223 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh---
Confidence 3456778988888877776642 1123677999999999999999999876543331 11111100
Q ss_pred hccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC---------------HHH-HHHHhcccC
Q 046314 249 IENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK---------------FEQ-LKYFVGWLH 312 (1137)
Q Consensus 249 ~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~---------------~~~-l~~l~~~~~ 312 (1137)
-.. ....+.+...+..++-+++|++|.++. .+| +..++...+
T Consensus 224 --VGv--------------------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD 281 (596)
T COG0465 224 --VGV--------------------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 281 (596)
T ss_pred --cCC--------------------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc
Confidence 001 111112223445566688999987732 122 666776677
Q ss_pred CCCCCCEEEE--EeCChhhHH-h----hCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc
Q 046314 313 GFCPGSRIVV--TTRDKQVLR-K----HGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 313 ~~~~gsrIIi--TTR~~~v~~-~----~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P 384 (1137)
.++.+.-||| .|-..+|+. . -..+. .+.|+..+-..-.+.+.-|+-+....+. .++ ..|++.+-|.-
T Consensus 282 GF~~~~gviviaaTNRpdVlD~ALlRpgRFDR--qI~V~~PDi~gRe~IlkvH~~~~~l~~~--Vdl-~~iAr~tpGfs 355 (596)
T COG0465 282 GFGGNEGVIVIAATNRPDVLDPALLRPGRFDR--QILVELPDIKGREQILKVHAKNKPLAED--VDL-KKIARGTPGFS 355 (596)
T ss_pred cCCCCCceEEEecCCCcccchHhhcCCCCcce--eeecCCcchhhHHHHHHHHhhcCCCCCc--CCH-HHHhhhCCCcc
Confidence 6764333333 232223321 1 12334 6777777777777778766644332211 122 12555555554
No 290
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.59 E-value=0.032 Score=63.94 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=36.4
Q ss_pred HHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 195 ECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455556444445679999999999999999999988766555666764
No 291
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.58 E-value=0.065 Score=60.17 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.9
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
...+++++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999887654
No 292
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.58 E-value=0.23 Score=55.27 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=37.0
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE 237 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1137)
|...+.++=..+....+...+..+ +.|.|.|.+|+||||+|+.++.++...|-
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 444444444444555566666432 46999999999999999999998876554
No 293
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.52 E-value=0.24 Score=59.38 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=67.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEE------Eeeccchh-------------ccCc-Ch-HHHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCF------IENVREEI-------------ENGV-GL-VHLHKQVVSLL 266 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~------~~~~~~~~-------------s~~~-~~-~~l~~~ll~~l 266 (1137)
-..|+|+|+.|+|||||.+.+....... .+.+- +..+.++. .+.. +. ..-.+..+..+
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 3569999999999999999997755333 11111 11111111 0001 00 22222333332
Q ss_pred hCcccc-------CCCCC-ccHHHHHhhcCCceEEEEeCC------CCHHHHHHHhcccCCCCCCCEEEEEeCChhhHHh
Q 046314 267 LGERIE-------MGGPN-IPAYTLERLRRTKVFFVLDDV------SKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRK 332 (1137)
Q Consensus 267 ~~~~~~-------~~~~~-~~~~l~~~L~~kr~LlVLDdv------~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 332 (1137)
+-.... .++.+ ..-.+...+-.++-+||||.= +..++++..+..+ +| .||+.|.|+.....
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~ 501 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDR 501 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHh
Confidence 211110 12222 222233445678889999964 3344455544433 34 58888999998876
Q ss_pred hCCCCccEEEEcc
Q 046314 333 HGVNDEYVYEVER 345 (1137)
Q Consensus 333 ~~~~~~~~~~v~~ 345 (1137)
.. .. ++.+.+
T Consensus 502 va-~~--i~~~~~ 511 (530)
T COG0488 502 VA-TR--IWLVED 511 (530)
T ss_pred hc-ce--EEEEcC
Confidence 54 33 677765
No 294
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.51 E-value=0.14 Score=61.23 Aligned_cols=58 Identities=31% Similarity=0.374 Sum_probs=40.9
Q ss_pred CCCCccchhhHHHHHHHhhcc---CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 183 SSKGLVGLNSRIECIKSLLCV---GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
..++++-=.+-++++..||.. +....+++.+.|++|+||||.++.+++.+. |+..-|.
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 334455555677778777763 233467999999999999999999998763 4444443
No 295
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.49 E-value=0.0027 Score=76.87 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=44.8
Q ss_pred cccccCCCCCCCEEeecCCCCCCcc--cccCCCCCCCEEEccCCCCCcCCCCCCcccccceeccccccccccCCC--C--
Q 046314 826 HASLLSGLSSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASNCKRLQFLPE--I-- 899 (1137)
Q Consensus 826 ~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~c~~L~~lp~--l-- 899 (1137)
....+..++.|+.+.|..|.+.+.. ..+..++.|. ..+... ..... .|+.|++..|...+.-.- .
T Consensus 354 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~-------~~~~~-~l~~L~l~~~~~~t~~~l~~~~~ 424 (482)
T KOG1947|consen 354 AELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR-------LCRSD-SLRVLNLSDCRLVTDKGLRCLAD 424 (482)
T ss_pred hHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH-------hccCC-ccceEecccCccccccchHHHhh
Confidence 3344667788888888887754432 3445555552 222111 11111 367777777765432221 1
Q ss_pred -CCCcceeeccccccccccc
Q 046314 900 -PSRPEELDASLLQKLSKYS 918 (1137)
Q Consensus 900 -p~~L~~L~~~~c~~L~~~~ 918 (1137)
-.++..+++.+|+.+....
T Consensus 425 ~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 425 SCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred hhhccccCCccCcccccchh
Confidence 3456667777777666544
No 296
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.46 E-value=0.016 Score=68.14 Aligned_cols=51 Identities=25% Similarity=0.230 Sum_probs=41.8
Q ss_pred CCCccchhhHHHHHHHhhc----cCCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 184 SKGLVGLNSRIECIKSLLC----VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.++++|++..++++.+.|. .-...-+++.++|++|+||||||+.+++-+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3478999999999998883 22345689999999999999999999885543
No 297
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.43 E-value=0.017 Score=59.23 Aligned_cols=37 Identities=30% Similarity=0.583 Sum_probs=32.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
...+|.+.|+.|+||||+|+.++.++...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4568999999999999999999999988887777764
No 298
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.1 Score=59.92 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=80.8
Q ss_pred CCCccchhhHHHHHHH---hhccC-------CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhcc--
Q 046314 184 SKGLVGLNSRIECIKS---LLCVG-------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIEN-- 251 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~---~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~-- 251 (1137)
.++.-|.|+..++|++ +|... ..=++-|.++|++|.|||-||++++-+..-.| |...-.+ ..+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF----F~~sGSE-FdEm~ 377 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF----FYASGSE-FDEMF 377 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe----Eeccccc-hhhhh
Confidence 4567788766555554 55421 11267799999999999999999986532222 2210000 000
Q ss_pred -CcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcccCCCCCC
Q 046314 252 -GVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLHGFCPG 317 (1137)
Q Consensus 252 -~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~~~g 317 (1137)
..+..++. +.+...-.+-+++|.+|.++.. ..+..|+..++.|.+.
T Consensus 378 VGvGArRVR--------------------dLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN 437 (752)
T KOG0734|consen 378 VGVGARRVR--------------------DLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN 437 (752)
T ss_pred hcccHHHHH--------------------HHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC
Confidence 01111111 1112222456899999988432 1166677777777654
Q ss_pred CEEEE--EeCChhhHHhh----C-CCCccEEEEccCCHHHHHHHHHhhcc
Q 046314 318 SRIVV--TTRDKQVLRKH----G-VNDEYVYEVERLNEDEGLELFYKYAF 360 (1137)
Q Consensus 318 srIIi--TTR~~~v~~~~----~-~~~~~~~~v~~L~~~ea~~Lf~~~a~ 360 (1137)
.-||| .|--++.+... | .+. .+.|+..+..--.++|..|.-
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD~--~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKALTRPGRFDR--HVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred CceEEEeccCChhhhhHHhcCCCccce--eEecCCCCcccHHHHHHHHHh
Confidence 44443 34333332221 1 233 566777776666666666653
No 299
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.22 Score=51.79 Aligned_cols=167 Identities=18% Similarity=0.304 Sum_probs=91.3
Q ss_pred CCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCc
Q 046314 185 KGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGV 253 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~ 253 (1137)
.++=|.+..++++.+.+-. +-..++-|..+|++|.|||-+|++.+.+....|-.- .
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL-------------A 237 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL-------------A 237 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh-------------c
Confidence 3455666666666655421 223466789999999999999999988765554211 0
Q ss_pred ChHHHHHHHHHHHhCccccCCCCCcc-HHHHHhhcCCceEEEEeCCCCH--------------HH--HHHHhcccCCCCC
Q 046314 254 GLVHLHKQVVSLLLGERIEMGGPNIP-AYTLERLRRTKVFFVLDDVSKF--------------EQ--LKYFVGWLHGFCP 316 (1137)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~--------------~~--l~~l~~~~~~~~~ 316 (1137)
+.. +.....+ ++..+. +.+.-.-...+.+|.+|.++.. -| .-.|+..+..|.+
T Consensus 238 gPQ-----LVQMfIG-----dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss 307 (424)
T KOG0652|consen 238 GPQ-----LVQMFIG-----DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS 307 (424)
T ss_pred chH-----HHhhhhc-----chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC
Confidence 111 1111111 111111 0111111345778888877321 11 3345566666665
Q ss_pred CC--EEEEEeCChh-----hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCC-CCChhHHHHHHHH
Q 046314 317 GS--RIVVTTRDKQ-----VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQS-HCPEHLTALSKKA 376 (1137)
Q Consensus 317 gs--rIIiTTR~~~-----v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~i 376 (1137)
.- +||..|-.-+ +++.-..+. .++.+..+.+.-.+++.-+..+.. .+.-+++++++.-
T Consensus 308 ~~~vKviAATNRvDiLDPALlRSGRLDR--KIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsT 373 (424)
T KOG0652|consen 308 DDRVKVIAATNRVDILDPALLRSGRLDR--KIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARST 373 (424)
T ss_pred ccceEEEeecccccccCHHHhhcccccc--cccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcc
Confidence 44 4565554333 333334454 678877777777777777765543 3445677776543
No 300
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.38 E-value=0.17 Score=61.39 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=42.1
Q ss_pred CCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 183 SSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
....++|....++++.+.+..-.....-|.|+|..|+|||++|+.+.+.-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 456799999999998888765444556788999999999999999988644
No 301
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.37 E-value=0.024 Score=56.02 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=30.4
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
..+|-|.|.+|.||||||+++.+++...-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368899999999999999999999988877777765
No 302
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.14 Score=58.39 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccC--CceEEEe
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEF--EGNCFIE 243 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 243 (1137)
+-++++++|+.|+||||++.+++.+....+ ..+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 357999999999999999999998765443 3444443
No 303
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.32 E-value=0.0089 Score=62.74 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=18.5
Q ss_pred CCCCCCEEeecCCCCCCcc----cccCCCCCCCEEEccC
Q 046314 832 GLSSLNWLNLNNCALTAIP----EEIGCLPSLEWLELRG 866 (1137)
Q Consensus 832 ~l~~L~~L~Ls~n~l~~lp----~~l~~l~~L~~L~Ls~ 866 (1137)
.+.+|..|++.+|..+.+- ..+.-+++|+.|+-..
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 4455666666666554421 1234456666665443
No 304
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.32 E-value=0.013 Score=56.34 Aligned_cols=22 Identities=50% Similarity=0.785 Sum_probs=20.6
Q ss_pred EEEEccCCChhhHHHHHHHHHh
Q 046314 211 VGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
|+|.|.+|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 305
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.32 E-value=0.011 Score=55.75 Aligned_cols=31 Identities=45% Similarity=0.551 Sum_probs=21.9
Q ss_pred EEEEccCCChhhHHHHHHHHHhhccCCceEE
Q 046314 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCF 241 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 241 (1137)
|.|+|.+|+||||+|++++..+...|..+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 6799999999999999999998888875433
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.30 E-value=0.066 Score=57.75 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 196 CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.|.++|..+-..-.++.|.|.+|+|||++|.++......+=..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 344555545556789999999999999999999765444445566665
No 307
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.30 E-value=0.055 Score=59.26 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=61.3
Q ss_pred HHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcccc
Q 046314 193 RIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIE 272 (1137)
Q Consensus 193 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~ 272 (1137)
.++.+..++. ....+|.|.|..|.||||+++++...+...-...+.+++-.+ . .+... .++.. ..
T Consensus 68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E-~----~~~~~-----~q~~v--~~ 132 (264)
T cd01129 68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVE-Y----QIPGI-----NQVQV--NE 132 (264)
T ss_pred HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCce-e----cCCCc-----eEEEe--CC
Confidence 4444555553 234589999999999999999998877543233444443322 1 11000 00000 01
Q ss_pred CCCCCccHHHHHhhcCCceEEEEeCCCCHHHHHHHhc
Q 046314 273 MGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVG 309 (1137)
Q Consensus 273 ~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~ 309 (1137)
..+....+.++..|+..+=.|+++++.+.+....++.
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHH
Confidence 1122345666888888899999999999887665443
No 308
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.27 E-value=0.21 Score=58.95 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=32.5
Q ss_pred chhhHHHHHHHhhccCC----CCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 189 GLNSRIECIKSLLCVGF----PDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 189 Gr~~~~~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
++..-+..|.+.+.... ...++|+|+|.+|+||||++..++.++..+
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 44444555555443211 235799999999999999999998876544
No 309
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.17 Score=52.39 Aligned_cols=151 Identities=23% Similarity=0.378 Sum_probs=84.8
Q ss_pred Cccc-hhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCc
Q 046314 186 GLVG-LNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGV 253 (1137)
Q Consensus 186 ~~vG-r~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~ 253 (1137)
++|| .+..+++|.+.+.. +-.+++-|.++|++|.|||-||+++++.. .+.|+. +..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg------ 214 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG------ 214 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech------
Confidence 4554 57777777766542 22467789999999999999999998743 334443 221
Q ss_pred ChHHHHHHHHHHHhCccccCCCCCccHHHH-HhhcCCceEEEEeCCCCH-------------H-H--HHHHhcccCCCC-
Q 046314 254 GLVHLHKQVVSLLLGERIEMGGPNIPAYTL-ERLRRTKVFFVLDDVSKF-------------E-Q--LKYFVGWLHGFC- 315 (1137)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~~-------------~-~--l~~l~~~~~~~~- 315 (1137)
.+-+|+-+ ++ +..+...+- -.-..-+-+|..|.++.. + | .-.|+..++.|.
T Consensus 215 -selvqk~i-----ge-----gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 215 -SELVQKYI-----GE-----GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred -HHHHHHHh-----hh-----hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 11112111 11 111110000 011245667778877432 1 1 223444555443
Q ss_pred -CCCEEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhccc
Q 046314 316 -PGSRIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYAFR 361 (1137)
Q Consensus 316 -~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~ 361 (1137)
..-+||..|-.-+++... .++. .++.++.+.+.-.+++.-+..+
T Consensus 284 tknikvimatnridild~allrpgridr--kiefp~p~e~ar~~ilkihsrk 333 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDR--KIEFPPPNEEARLDILKIHSRK 333 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccc--cccCCCCCHHHHHHHHHHhhhh
Confidence 566788877655544322 2444 6888888888888888776543
No 310
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.24 E-value=0.19 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.9
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
++.|.|.+|+||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999998764
No 311
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.19 E-value=0.017 Score=60.37 Aligned_cols=26 Identities=50% Similarity=0.663 Sum_probs=23.6
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
+|||.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988643
No 312
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.13 E-value=0.076 Score=55.43 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=56.4
Q ss_pred HHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHH------HHHh
Q 046314 194 IECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVV------SLLL 267 (1137)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll------~~l~ 267 (1137)
.+.+...+.. +-+++.|.|.+|.||||+++.+...+...-..++++. ........+.+..- ..+.
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a------pT~~Aa~~L~~~~~~~a~Ti~~~l 77 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA------PTNKAAKELREKTGIEAQTIHSFL 77 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE------SSHHHHHHHHHHHTS-EEEHHHHT
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC------CcHHHHHHHHHhhCcchhhHHHHH
Confidence 3444555542 3367889999999999999999887766533333332 11111222222210 0000
Q ss_pred CccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCC
Q 046314 268 GERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRD 326 (1137)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 326 (1137)
............ -..++-+||+|++... .++..++.... ..|.|+|+.-=.
T Consensus 78 ~~~~~~~~~~~~------~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~ 130 (196)
T PF13604_consen 78 YRIPNGDDEGRP------ELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDP 130 (196)
T ss_dssp TEECCEECCSSC------C-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-T
T ss_pred hcCCcccccccc------cCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCc
Confidence 000000000000 0233459999999764 45666665443 257788876543
No 313
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.23 Score=54.97 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=28.4
Q ss_pred CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 205 FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
..++.||-++|.-|.||||....+++.++.+=-.++.+
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lv 135 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALV 135 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEE
Confidence 35688999999999999999988877665543333333
No 314
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.13 Score=53.22 Aligned_cols=52 Identities=33% Similarity=0.441 Sum_probs=39.9
Q ss_pred CccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC
Q 046314 186 GLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE 237 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1137)
++=|.+-..+++.+.... +-+.++-|.++|++|.|||.||+++++.....|-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fi 218 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhee
Confidence 455777777777776532 2355788999999999999999999997766554
No 315
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.12 E-value=0.077 Score=52.16 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.2
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 316
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.10 E-value=1.2 Score=47.34 Aligned_cols=228 Identities=15% Similarity=0.211 Sum_probs=124.7
Q ss_pred CCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc------cCCceEEEeeccch-----hc-
Q 046314 183 SSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN------EFEGNCFIENVREE-----IE- 250 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~-----~s- 250 (1137)
.-+.+.+.++.-.++.++.. .++.....++|+.|.||-|.+..+.+++-+ +-+..-|....... ++
T Consensus 11 sl~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 34557888888888887764 345788889999999999999998886532 12223333211110 00
Q ss_pred --------cCcC--hHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCce-EEEEeCCCCH--HHHHHHhcccCCCCCC
Q 046314 251 --------NGVG--LVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKV-FFVLDDVSKF--EQLKYFVGWLHGFCPG 317 (1137)
Q Consensus 251 --------~~~~--~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~--~~l~~l~~~~~~~~~g 317 (1137)
.+.| -.-+.++++.+...... .+.-..+.+ ++|+-.++.. +.-.+|..........
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q-----------ie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------IETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------hhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 0111 12344444444432210 011112233 4555555432 1112222222223467
Q ss_pred CEEEEE----eCChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhh
Q 046314 318 SRIVVT----TRDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSS 393 (1137)
Q Consensus 318 srIIiT----TR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~ 393 (1137)
+|+|+. ||--...+.- ...+.++..+++|....++.-+-+.....+ .+++.+|+++++|+---.-.+-..
T Consensus 158 ~RlIl~cns~SriIepIrSR----Cl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSR----CLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred ceEEEEecCcccchhHHhhh----eeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 788763 4433322221 126899999999999999888766554444 789999999999985322222222
Q ss_pred hc-------c----CCHHHHHHHHHHHhc----cCCcccHHHHHHHhhccC
Q 046314 394 LH-------Q----KSKLDWENVLDNLKQ----ISGVSRIYNVLRISYEEL 429 (1137)
Q Consensus 394 L~-------~----~~~~~w~~~l~~l~~----~~~~~~i~~~l~~sy~~L 429 (1137)
.+ + -+.-+|+-.+.+... ......+..+-..=|+-|
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 11 1 145689988776532 122245555555556554
No 317
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.00084 Score=70.09 Aligned_cols=80 Identities=24% Similarity=0.193 Sum_probs=49.9
Q ss_pred CCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc--c
Q 046314 775 LKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE--E 852 (1137)
Q Consensus 775 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~--~ 852 (1137)
+.+.+.|+..||..... .....|+.|+.|.|+-|+|+++.. +..|+.|++|.|..|.|.++.+ -
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p------------l~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP------------LQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh------------HHHHHHHHHHHHHhcccccHHHHHH
Confidence 44556666666654431 234567777777777777766644 4456667777777776666443 4
Q ss_pred cCCCCCCCEEEccCCC
Q 046314 853 IGCLPSLEWLELRGNN 868 (1137)
Q Consensus 853 l~~l~~L~~L~Ls~n~ 868 (1137)
+.++|+|+.|.|..|.
T Consensus 84 LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcCchhhhHhhccCC
Confidence 5667777777776654
No 318
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.07 E-value=0.09 Score=66.28 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=39.4
Q ss_pred CCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 184 SKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...++|+...+.++.+.+..-.....-|.|+|..|.|||++|+.+++.-.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 45799999999888776653333445788999999999999999987543
No 319
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.075 Score=59.53 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=56.1
Q ss_pred HHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcc--c
Q 046314 194 IECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGER--I 271 (1137)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~--~ 271 (1137)
+.++.+.|-.+--.-.+|.|=|-+|||||||..+++.++..+- .+.++. ......++ +--+..+.... .
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs-------GEES~~Qi-klRA~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS-------GEESLQQI-KLRADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe-------CCcCHHHH-HHHHHHhCCCccce
Confidence 3455566643322346899999999999999999999998777 677765 12222221 11223333211 1
Q ss_pred cCCCCCccHHHHHhh-cCCceEEEEeCC
Q 046314 272 EMGGPNIPAYTLERL-RRTKVFFVLDDV 298 (1137)
Q Consensus 272 ~~~~~~~~~~l~~~L-~~kr~LlVLDdv 298 (1137)
..-.+...+.+.+.+ ..++-++|+|-+
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 111222233334444 467789999988
No 320
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.046 Score=55.76 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=20.9
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.|.|.|.+|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999983
No 321
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.02 E-value=0.044 Score=63.86 Aligned_cols=46 Identities=28% Similarity=0.247 Sum_probs=38.7
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 46899999999988877544 45889999999999999999987643
No 322
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.98 E-value=0.23 Score=54.30 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=64.9
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHh--Cccc---c---CCCCC
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLL--GERI---E---MGGPN 277 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~--~~~~---~---~~~~~ 277 (1137)
.+..-++|.|..|.|||||.+.++..+... .+.+++... . +...... .++..... .+.. . .+...
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~-v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-K-VGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-E-eecchhH----HHHHHHhcccccccccccccccccch
Confidence 345789999999999999999999876543 333333210 0 1100011 12211111 1100 0 01111
Q ss_pred ccHHHHHhhc-CCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhHH
Q 046314 278 IPAYTLERLR-RTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLR 331 (1137)
Q Consensus 278 ~~~~l~~~L~-~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 331 (1137)
....+...+. ..+=++++|.+...+.+..+..... .|..||+||-+..+..
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 1111222222 5778999999988887777766543 5788999998866543
No 323
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.96 E-value=0.12 Score=50.93 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=55.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL 286 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 286 (1137)
.-.+++|.|..|.|||||++.+..... ...+.+++..... +.-...+. .+....-.+.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~-i~~~~~lS-----------------~G~~~rv~laral 85 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVK-IGYFEQLS-----------------GGEKMRLALAKLL 85 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEE-EEEEccCC-----------------HHHHHHHHHHHHH
Confidence 346899999999999999999976543 2344455432111 10000000 0001111224455
Q ss_pred cCCceEEEEeCCC---CHHHHHHHhcccCCCCCCCEEEEEeCChhhHHh
Q 046314 287 RRTKVFFVLDDVS---KFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRK 332 (1137)
Q Consensus 287 ~~kr~LlVLDdv~---~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 332 (1137)
..++=++++|+-. +.+..+.+...+... +..||++|.+......
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 5677788999863 222222222222111 2468888888765543
No 324
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.029 Score=66.38 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=45.1
Q ss_pred CCccchhhHHHHHHHhhcc----CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC
Q 046314 185 KGLVGLNSRIECIKSLLCV----GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE 237 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1137)
++-+|++.-.++|.+++.- ++-+-++++.+|++|+|||.+|+.++..+...|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 4579999999999998863 3345689999999999999999999998877764
No 325
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.92 E-value=0.059 Score=58.91 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=21.3
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
+.|.|+|.+|+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999999999999977653
No 326
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.88 E-value=0.32 Score=58.97 Aligned_cols=50 Identities=18% Similarity=0.036 Sum_probs=37.7
Q ss_pred CCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHH
Q 046314 182 DSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
...++++|....++++.+.+..-...-.-|.|+|..|.||+++|+++...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 34568999999888887766432222344789999999999999997654
No 327
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.88 E-value=0.24 Score=49.46 Aligned_cols=131 Identities=19% Similarity=0.216 Sum_probs=71.1
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHh------------------------------hccCCceEEEeeccchhccCcChH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQV------------------------------SNEFEGNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~------------------------------~~~F~~~~~~~~~~~~~s~~~~~~ 256 (1137)
..++..|+|-.|+||+||..+++... +.+....+|+. ...-+++.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlR-----AEs~yn~a 110 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLR-----AESFYNVA 110 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEe-----hhHHHHHH
Confidence 45788999999999999999887531 11122223332 22223333
Q ss_pred HHHHHHHHHHh--Ccc-cc-CCCCCccHHHHHhhcCCceEEEEeCCCC----HHHHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 257 HLHKQVVSLLL--GER-IE-MGGPNIPAYTLERLRRTKVFFVLDDVSK----FEQLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 257 ~l~~~ll~~l~--~~~-~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~----~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
.-..++..+.. ..+ .. ..+......+.+++.++ =+.|||.=+. ..|++-+.....-...|+.|||.|..+-
T Consensus 111 s~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 111 SYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred HHHHhhhhhcccCCcchhhhccchHHHHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 32332221111 111 01 13344455555555544 4678898543 4566655443333357899999999876
Q ss_pred hHHhhCCCCccEEEEccC
Q 046314 329 VLRKHGVNDEYVYEVERL 346 (1137)
Q Consensus 329 v~~~~~~~~~~~~~v~~L 346 (1137)
++ .++...+|++..-
T Consensus 190 Ll---AiP~A~I~~~~~~ 204 (233)
T COG3910 190 LL---AIPGAEIYEISES 204 (233)
T ss_pred he---eCCCcEEEEEecC
Confidence 54 4444447775543
No 328
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.87 E-value=0.28 Score=59.12 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=38.4
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..++|....+.++.+.+..-...-..|.|+|.+|.|||++|+.+....
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 568999988888877775433444568899999999999999998753
No 329
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.031 Score=57.87 Aligned_cols=31 Identities=48% Similarity=0.546 Sum_probs=27.5
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
..+.+|||.|.+|.||||+|+.++..+....
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~ 36 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEK 36 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCc
Confidence 4578999999999999999999999988663
No 330
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.85 E-value=0.05 Score=60.65 Aligned_cols=48 Identities=31% Similarity=0.414 Sum_probs=36.6
Q ss_pred HHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 196 CIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 196 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3445554 34455689999999999999999999887766666777775
No 331
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.84 E-value=0.023 Score=47.97 Aligned_cols=23 Identities=48% Similarity=0.642 Sum_probs=21.2
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+|+|.|.+|+||||+|+++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 332
>PRK08356 hypothetical protein; Provisional
Probab=94.83 E-value=0.14 Score=53.48 Aligned_cols=21 Identities=48% Similarity=0.496 Sum_probs=19.3
Q ss_pred EEEEEEccCCChhhHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALF 229 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~ 229 (1137)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 333
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.81 E-value=0.43 Score=55.97 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=27.5
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh--ccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS--NEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 243 (1137)
.++++++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988765 3334455554
No 334
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.79 E-value=1.6 Score=49.75 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=25.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.+.+|-.+|.-|.||||.|-.+++.++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 4789999999999999999999988766
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.79 E-value=0.19 Score=50.31 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=65.8
Q ss_pred HHHHhhhcceeEEEeccccccchhhHHHHHHHHHhhhcCCCeEEEEEeecCcccccccccchHHHHHHHHHHhhhhHHHH
Q 046314 56 LMKAIEGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSPSDVRKQTGTFGEGFVKLEQQFKEKAETV 135 (1137)
Q Consensus 56 ~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~~~~~~~~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~v 135 (1137)
+.++++++.+.+.|+......+.. -.++.+.+... ..+..++.|+=++|-.+ .+.+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~----------------------~~~~ 57 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVP----------------------TWVT 57 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCC----------------------HHHH
Confidence 568999999999999865432222 23455555432 22356778877776421 1123
Q ss_pred HHHHHHHHHhcccCCCCcccCchhhHHHHHHHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhccCC-CCeEEEEEE
Q 046314 136 RKWRDAMIKTSYLSGHESTKIRPEAKLVQVIVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGF-PDVRIVGIW 214 (1137)
Q Consensus 136 ~~w~~aL~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~ 214 (1137)
+.|..++.+......+. .....=.|.+.-++.+.+++.... .....|+++
T Consensus 58 ~~~~~~~~~~~~~~~~~-----------------------------iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~ 108 (157)
T cd01858 58 ARWVKILSKEYPTIAFH-----------------------------ASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFI 108 (157)
T ss_pred HHHHHHHhcCCcEEEEE-----------------------------eeccccccHHHHHHHHHHHHhhhccccceEEEEE
Confidence 45555544321100000 000011244444444444432111 234568899
Q ss_pred ccCCChhhHHHHHHHH
Q 046314 215 GMGGIGKTTLAKALFN 230 (1137)
Q Consensus 215 G~gGiGKTtLA~~v~~ 230 (1137)
|++|+|||||...+..
T Consensus 109 G~~nvGKStliN~l~~ 124 (157)
T cd01858 109 GYPNVGKSSIINTLRS 124 (157)
T ss_pred eCCCCChHHHHHHHhc
Confidence 9999999999999865
No 336
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.79 E-value=0.057 Score=60.22 Aligned_cols=48 Identities=31% Similarity=0.417 Sum_probs=36.2
Q ss_pred HHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 196 CIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 196 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.|..+|. .+-+.-+++-|.|++|+||||||.+++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3444554 34456789999999999999999998887766656677775
No 337
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.28 Score=61.37 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=73.2
Q ss_pred CCccchhhHHHHHHHhhccCC---C---CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHH
Q 046314 185 KGLVGLNSRIECIKSLLCVGF---P---DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~---~---~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
+.++|.+..+..|.+.+.... . ......+.|+.|+|||.||++++..+.+..+.-+-++ +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 468999999999988876321 1 3567789999999999999999998876666555443 2222
Q ss_pred HHHHHHHHhCccccCCCCCccHHHHHhhcCCce-EEEEeCCCCHH
Q 046314 259 HKQVVSLLLGERIEMGGPNIPAYTLERLRRTKV-FFVLDDVSKFE 302 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~ 302 (1137)
+. .+++.+.....-+......+.+.++++++ +|.||||+..+
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 22 44444444444555556677888888887 55679997644
No 338
>PTZ00301 uridine kinase; Provisional
Probab=94.77 E-value=0.026 Score=59.28 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
..+|||.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 36899999999999999999998875444
No 339
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.76 E-value=0.034 Score=60.65 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=22.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
.|.++|++|+||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887544
No 340
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.066 Score=57.43 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=27.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCC
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFE 237 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1137)
-+..++|||++|-|||-+|++|+..+.-.|-
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl 195 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFL 195 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceE
Confidence 4678999999999999999999998876663
No 341
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.73 E-value=0.1 Score=50.11 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=51.1
Q ss_pred ccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC--cccccceeeccc
Q 046314 545 LDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF--KPKNLIELNLPF 622 (1137)
Q Consensus 545 l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~ 622 (1137)
++..+|.++++|+.+.+.. ....++...+....+|+.+.+.++ +..++... ++.+|+.+.+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~--------------~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN--------------TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp E-TTTTTT-TT--EEEETS--------------T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred ECHHHHhCCCCCCEEEECC--------------CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 5677899999999888853 345666666555557888888764 77776644 555677777754
Q ss_pred CCchhhhhhhhhccccceeEEecCCCCCCCccCC--CCCCCcccEeeccC
Q 046314 623 SKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD--PSETPSLERINLWN 670 (1137)
Q Consensus 623 n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~~~l~~L~~L~L~~ 670 (1137)
.+..+... .+..+.+|+.+++..+ ...++. +.+. +|+.+.+.+
T Consensus 68 -~~~~i~~~-~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 68 -NLKSIGDN-AFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TT-EE-TT-TTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred -cccccccc-cccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 44444322 2333446666666543 222222 4444 555555543
No 342
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.73 E-value=0.26 Score=54.39 Aligned_cols=25 Identities=40% Similarity=0.410 Sum_probs=21.5
Q ss_pred CCCeEEEEEEccCCChhhHHHHHHH
Q 046314 205 FPDVRIVGIWGMGGIGKTTLAKALF 229 (1137)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~ 229 (1137)
++++..|.+.|.+|.|||.||.+..
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHH
Confidence 3678999999999999999887654
No 343
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.73 E-value=0.38 Score=60.23 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=36.8
Q ss_pred CCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 184 SKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.+.++|....+.++.+....-.....-|.|+|..|+||+++|+++.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4568888888887776665332333447899999999999999998754
No 344
>PRK08233 hypothetical protein; Provisional
Probab=94.72 E-value=0.024 Score=58.42 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=23.4
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 345
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.052 Score=56.45 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=28.5
Q ss_pred CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeec
Q 046314 205 FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENV 245 (1137)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 245 (1137)
-+.++-|.++|++|.|||-+|++++++.. .||+.-+
T Consensus 208 idppkgvllygppgtgktl~aravanrtd-----acfirvi 243 (435)
T KOG0729|consen 208 IDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVI 243 (435)
T ss_pred CCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEeeh
Confidence 34567899999999999999999998764 4565533
No 346
>PRK06762 hypothetical protein; Provisional
Probab=94.70 E-value=0.027 Score=57.16 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=22.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+++|.|.|++|+||||+|+.+.+++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999877
No 347
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.70 E-value=0.052 Score=57.90 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998875
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.66 E-value=0.13 Score=52.49 Aligned_cols=105 Identities=26% Similarity=0.252 Sum_probs=55.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeec--cchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENV--REEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
-.+++|.|..|.|||||++.+..-... ..+.+.+... .- ..+...+. .+....-.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~-~~q~~~LS-----------------gGq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVY-KPQYIDLS-----------------GGELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEE-EcccCCCC-----------------HHHHHHHHHHHH
Confidence 358999999999999999998864432 2344444311 10 11111100 011111223455
Q ss_pred hcCCceEEEEeCCCC---HHH---HHHHhcccCCCCCCCEEEEEeCChhhHHh
Q 046314 286 LRRTKVFFVLDDVSK---FEQ---LKYFVGWLHGFCPGSRIVVTTRDKQVLRK 332 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~---~~~---l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 332 (1137)
+..++-++++|+-.. ... +..++..+.. ..+..||++|.+......
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHH
Confidence 566778899998632 222 2223222211 123578888888776553
No 349
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.65 E-value=0.03 Score=59.26 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=24.6
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999876
No 350
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.63 E-value=0.12 Score=59.68 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=32.6
Q ss_pred hhHHHHHHHhhc-----cCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 191 NSRIECIKSLLC-----VGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 191 ~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.+-++++..||. ...-+.++..|+|++|+||||..+.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345667777776 333456899999999999999999998764
No 351
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.57 E-value=0.085 Score=62.91 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=48.8
Q ss_pred CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHH
Q 046314 205 FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLE 284 (1137)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 284 (1137)
.+.-++..++|++|+||||||.-++++.. |. +--.| .|+......+...+...+....
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG--Ys--VvEIN----ASDeRt~~~v~~kI~~avq~~s-------------- 380 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG--YS--VVEIN----ASDERTAPMVKEKIENAVQNHS-------------- 380 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC--ce--EEEec----ccccccHHHHHHHHHHHHhhcc--------------
Confidence 35678999999999999999999987642 22 11111 4555555556655555443221
Q ss_pred hh--cCCceEEEEeCCCCH
Q 046314 285 RL--RRTKVFFVLDDVSKF 301 (1137)
Q Consensus 285 ~L--~~kr~LlVLDdv~~~ 301 (1137)
.+ ..++.-+|+|.++-.
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 12 256778999999764
No 352
>PRK03839 putative kinase; Provisional
Probab=94.56 E-value=0.028 Score=57.90 Aligned_cols=24 Identities=42% Similarity=0.670 Sum_probs=21.9
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999874
No 353
>PRK05439 pantothenate kinase; Provisional
Probab=94.54 E-value=0.089 Score=58.39 Aligned_cols=30 Identities=33% Similarity=0.320 Sum_probs=25.7
Q ss_pred CCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 205 FPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
...+-+|||.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999886653
No 354
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.54 E-value=0.042 Score=54.73 Aligned_cols=20 Identities=45% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEccCCChhhHHHHHHHHHh
Q 046314 213 IWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 213 I~G~gGiGKTtLA~~v~~~~ 232 (1137)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 355
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.53 E-value=0.1 Score=61.61 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=36.3
Q ss_pred HHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 195 ECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555666544445679999999999999999999987764444566665
No 356
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.50 E-value=0.21 Score=51.22 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=25.9
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
.-.+++|.|..|.|||||++.++-.... ..+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITL 61 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEE
Confidence 3468999999999999999999875432 2344444
No 357
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.50 E-value=0.038 Score=58.32 Aligned_cols=28 Identities=43% Similarity=0.707 Sum_probs=24.7
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+...+|+|.|++|+||||||+.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999988654
No 358
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.47 E-value=0.029 Score=62.05 Aligned_cols=125 Identities=22% Similarity=0.116 Sum_probs=70.4
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHH
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVS 264 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~ 264 (1137)
+++.-.....+++.++|...-..-+.|.|.|..|.||||+++++...+...-...+-+++..+.. + .
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~-----l--------~ 170 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR-----L--------P 170 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S---------------S
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee-----e--------c
Confidence 34443444445555555433234588999999999999999999987766623334444332210 0 0
Q ss_pred HHhCccc-c-CCCCCccHHHHHhhcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEE-EEEeCC
Q 046314 265 LLLGERI-E-MGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRI-VVTTRD 326 (1137)
Q Consensus 265 ~l~~~~~-~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrI-IiTTR~ 326 (1137)
....... . .......+.++..|+..+=.+|++.+.+.+..+.+.. ...|..+ +-|...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a----~~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 171 GPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQA----ANTGHLGSLTTLHA 231 (270)
T ss_dssp CSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHH----HHTT-EEEEEEEE-
T ss_pred ccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHh----hccCCceeeeeeec
Confidence 0000000 0 1334456667888888888999999999888776432 2356677 455443
No 359
>PRK06217 hypothetical protein; Validated
Probab=94.46 E-value=0.14 Score=52.89 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.8
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.|+|.|.+|.||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998763
No 360
>PTZ00494 tuzin-like protein; Provisional
Probab=94.44 E-value=12 Score=43.03 Aligned_cols=211 Identities=16% Similarity=0.154 Sum_probs=116.2
Q ss_pred HHHHHHHHHH-------------hcccCCCCcccCchhhH--HHHHHHHHHHHhcccc-----ccCCCCCCCccchhhHH
Q 046314 135 VRKWRDAMIK-------------TSYLSGHESTKIRPEAK--LVQVIVNDILKKLECK-----SISSDSSKGLVGLNSRI 194 (1137)
Q Consensus 135 v~~w~~aL~~-------------~~~~~g~~~~~~~~e~~--~i~~i~~~v~~~l~~~-----~~~~~~~~~~vGr~~~~ 194 (1137)
-+.||-+|++ ++...||...++..+.. ..+-.++...+.+ ++ +..+.....+|.|+.+-
T Consensus 302 ERd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~-~~~~~~~~~a~a~~~~~V~R~~eE 380 (664)
T PTZ00494 302 DTNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAA-RPRKEEGMLAAAAEAFEVRREDEE 380 (664)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccc-CCCcccccccccccccccchhhHH
Confidence 3468877765 34445675554443322 2333445555554 22 01244567899999998
Q ss_pred HHHHHhhcc-CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccC
Q 046314 195 ECIKSLLCV-GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEM 273 (1137)
Q Consensus 195 ~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~ 273 (1137)
.-+.+.|.. +...+|++++.|.-|.||++|.+....+ .--..+|++ ++. .++-++.+.+.+.....+.
T Consensus 381 ~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VD-VRg-------~EDtLrsVVKALgV~nve~ 449 (664)
T PTZ00494 381 ALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVD-VGG-------TEDTLRSVVRALGVSNVEV 449 (664)
T ss_pred HHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEE-ecC-------CcchHHHHHHHhCCCChhh
Confidence 888888864 3456899999999999999999876543 333455664 332 2344455555555544333
Q ss_pred CCCCccHHHHHh-------hcCCceEEEEe--CCCCHHH-HHHHhcccCCCCCCCEEEEEeCChhhHHh-hCCCCccEEE
Q 046314 274 GGPNIPAYTLER-------LRRTKVFFVLD--DVSKFEQ-LKYFVGWLHGFCPGSRIVVTTRDKQVLRK-HGVNDEYVYE 342 (1137)
Q Consensus 274 ~~~~~~~~l~~~-------L~~kr~LlVLD--dv~~~~~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~-~~~~~~~~~~ 342 (1137)
-++ .++++.+. ..++.-+||+- +-.+... ..+.. .+.....-++|++----+.+... ...+.-..|.
T Consensus 450 CGD-lLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~ 527 (664)
T PTZ00494 450 CGD-LLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYC 527 (664)
T ss_pred hcc-HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhccCccceeEe
Confidence 222 22333322 33455566653 2222221 22211 12122345677764433322111 1222223799
Q ss_pred EccCCHHHHHHHHHhhc
Q 046314 343 VERLNEDEGLELFYKYA 359 (1137)
Q Consensus 343 v~~L~~~ea~~Lf~~~a 359 (1137)
|++++.++|.++-....
T Consensus 528 VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 528 IPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCCcCHHHHHHHHhccc
Confidence 99999999998875543
No 361
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.43 E-value=0.055 Score=58.14 Aligned_cols=32 Identities=38% Similarity=0.353 Sum_probs=27.4
Q ss_pred CCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 205 FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
.+...+|||.|..|.|||||++.+...+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35688999999999999999999998776543
No 362
>PRK00625 shikimate kinase; Provisional
Probab=94.41 E-value=0.031 Score=56.77 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.|.++||+|+||||+|+.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998874
No 363
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.41 E-value=1.3 Score=47.99 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCc
Q 046314 159 EAKLVQVIVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEG 238 (1137)
Q Consensus 159 e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 238 (1137)
+...++.-......+.+.+..+....+.|+|-..-.. +...+......-+.+.++|+.|+|||+-++.+++.. +.
T Consensus 46 ~~~~~~a~ia~~le~~~~q~~~~~~~~~~l~tkt~r~-~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p~ 120 (297)
T COG2842 46 DYATNEAKIAAFLEKKGVQAALEKLAPDFLETKTVRR-IFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----PN 120 (297)
T ss_pred hHHHHHHHHHHHHcCCCcccccccccccccccchhHh-HhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----cc
Confidence 3333443344444444344355667788998765322 222332222233588999999999999998887643 33
Q ss_pred eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCC
Q 046314 239 NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCP 316 (1137)
Q Consensus 239 ~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~ 316 (1137)
.+.+. .+..+....++..+....+.... ....+....+..++++..=+++.|+.+.. +.++.+.......|-
T Consensus 121 ~~l~~-----~~p~~~a~~~i~~i~~~~~~~~~-~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi 194 (297)
T COG2842 121 ALLIE-----ADPSYTALVLILIICAAAFGATD-GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGI 194 (297)
T ss_pred ceeec-----CChhhHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCc
Confidence 33333 44445555555554444433221 11122344446677888889999998763 445555443332232
Q ss_pred CCEEEEEeCChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCC
Q 046314 317 GSRIVVTTRDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQS 363 (1137)
Q Consensus 317 gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~ 363 (1137)
|-..+=+-| ... +-.=+..+..+++.+..++..
T Consensus 195 ~~vLvG~pr---L~~-----------~l~~~~~~~~rl~srv~v~~~ 227 (297)
T COG2842 195 GVVLVGMPR---LFK-----------VLRRPEDELSRLYSRVRVGKL 227 (297)
T ss_pred eEEEecChH---HHh-----------ccccchHHHHHHHHHhhhHhh
Confidence 321111212 111 111134667788888877644
No 364
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.40 E-value=0.11 Score=61.37 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=37.1
Q ss_pred HHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 194 IECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44555666544455679999999999999999999887755544566764
No 365
>PRK04040 adenylate kinase; Provisional
Probab=94.36 E-value=0.04 Score=57.00 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=23.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+|+|+|++|+||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999875
No 366
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.36 E-value=0.12 Score=53.26 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=62.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHH------HHHHHHHHhCccc------cCC
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHL------HKQVVSLLLGERI------EMG 274 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l------~~~ll~~l~~~~~------~~~ 274 (1137)
.-.+++|.|..|.|||||++.++.... ...+.+++.... .. ....... ..+++..+...+. ..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~--~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD--LA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE--CC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 346899999999999999999987543 345555553211 11 0111111 1113333222110 111
Q ss_pred -CCCccHHHHHhhcCCceEEEEeCCCC---HHH---HHHHhcccCCCCCCCEEEEEeCChhhHH
Q 046314 275 -GPNIPAYTLERLRRTKVFFVLDDVSK---FEQ---LKYFVGWLHGFCPGSRIVVTTRDKQVLR 331 (1137)
Q Consensus 275 -~~~~~~~l~~~L~~kr~LlVLDdv~~---~~~---l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 331 (1137)
+....-.+.+.+...+-++++|+-.. .+. +..++..+.. ..|..||++|.+.....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH
Confidence 11122233455667888999998632 222 3333322211 12678899998877553
No 367
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.35 E-value=0.23 Score=54.84 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=36.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEEeeccchhccCcChHHHHHHHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFIENVREEIENGVGLVHLHKQVVSLLL 267 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~ 267 (1137)
.-.++.|.|.+|+||||+|.+++.....+ -..++|+. . .....++...+.+.+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS-----~--E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS-----L--EEPVVRTARRLLGQYA 83 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE-----c--ccCHHHHHHHHHHHHh
Confidence 44688899999999999999998876544 34556654 2 2234455555555443
No 368
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.30 E-value=0.12 Score=56.54 Aligned_cols=59 Identities=27% Similarity=0.254 Sum_probs=45.9
Q ss_pred CCCCCCccchhhHHHH---HHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCce
Q 046314 181 SDSSKGLVGLNSRIEC---IKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGN 239 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 239 (1137)
-...+.+||..+..+. +.++...+.-.-+.|.|+|++|.|||+||..+++.+...-+.+
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred eEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 3456889998876665 4566665554568899999999999999999999987665533
No 369
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.28 E-value=0.14 Score=51.88 Aligned_cols=118 Identities=17% Similarity=0.103 Sum_probs=57.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccc--hhccCcCh--HHHHHHHHHHHhCccccCC-CCCccHH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVRE--EIENGVGL--VHLHKQVVSLLLGERIEMG-GPNIPAY 281 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~--~~s~~~~~--~~l~~~ll~~l~~~~~~~~-~~~~~~~ 281 (1137)
.-.+++|.|..|.|||||++.++..... ..+.+++...+. .+.+...+ ..+.+.+... .....+ +....-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 3468999999999999999999875432 223333321000 01111111 1222222110 111111 1222223
Q ss_pred HHHhhcCCceEEEEeCCCC---HHHHHHHhcccCCCCCCCEEEEEeCChhhH
Q 046314 282 TLERLRRTKVFFVLDDVSK---FEQLKYFVGWLHGFCPGSRIVVTTRDKQVL 330 (1137)
Q Consensus 282 l~~~L~~kr~LlVLDdv~~---~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 330 (1137)
+.+.+..++=++++|+-.. .+..+.+...+... +..||++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 3455667778889998522 22222222222112 45788888887654
No 370
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.28 E-value=0.036 Score=55.85 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=25.9
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceE
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNC 240 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 240 (1137)
+.|-+.|.+|+||||+|++++..+++.-..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 46789999999999999999997766554443
No 371
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.0045 Score=64.81 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=59.1
Q ss_pred CCceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC------CCCCCccc
Q 046314 591 EKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD------PSETPSLE 664 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~------~~~l~~L~ 664 (1137)
+.|++|.|+-|.+++|.+...+++|++|.|..|.|..+-+-.-..++++|+.|.|..|.....-+. +.-+|||+
T Consensus 41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLk 120 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLK 120 (388)
T ss_pred ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccch
Confidence 378999999999999988889999999999999998886655555566888888888765544432 24566776
Q ss_pred Eee
Q 046314 665 RIN 667 (1137)
Q Consensus 665 ~L~ 667 (1137)
.||
T Consensus 121 KLD 123 (388)
T KOG2123|consen 121 KLD 123 (388)
T ss_pred hcc
Confidence 665
No 372
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.24 E-value=0.13 Score=54.71 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 373
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.23 E-value=0.029 Score=52.16 Aligned_cols=26 Identities=42% Similarity=0.630 Sum_probs=22.0
Q ss_pred EEEEccCCChhhHHHHHHHHHhhccC
Q 046314 211 VGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
|-|+|.+|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998776543
No 374
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.21 E-value=0.43 Score=48.67 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
++.+.|++|.||||+++.++..+...-..++.+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 678999999999999999998876653333333
No 375
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=94.21 E-value=0.085 Score=57.95 Aligned_cols=101 Identities=22% Similarity=0.387 Sum_probs=62.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccc--------cCCCC---
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERI--------EMGGP--- 276 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~--------~~~~~--- 276 (1137)
-.-||+.|-+|+|||-|.+++.+.+..+..+...+..+++.. ..-.++..++-..-...+. +.++.
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERt---REGndLy~Em~es~vl~ktalv~gQMNEpPGaR~R 223 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVLDKTALVFGQMNEPPGARMR 223 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccc---cchHHHHHHHHhcCCCCceeEEEeecCCCCcceee
Confidence 356999999999999999999999987777766666666632 2234555555443221111 11111
Q ss_pred ------CccHHHHHhhcCCceEEEEeCCCCHHH----HHHHhcccC
Q 046314 277 ------NIPAYTLERLRRTKVFFVLDDVSKFEQ----LKYFVGWLH 312 (1137)
Q Consensus 277 ------~~~~~l~~~L~~kr~LlVLDdv~~~~~----l~~l~~~~~ 312 (1137)
.+.+++++. .++.+|+.+||+..--| +..|++..|
T Consensus 224 ValtGlT~AEyfRD~-~gqdVLlFIDNIfRftQAGsEVSalLGr~P 268 (468)
T COG0055 224 VALTGLTMAEYFRDE-EGQDVLLFIDNIFRFTQAGSEVSALLGRMP 268 (468)
T ss_pred ehhhhhhHHHHhhcc-cCCeEEEEehhhhHHhhcchHHHHHhccCc
Confidence 222222222 36789999999966444 566666554
No 376
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.19 E-value=0.15 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCChhhHHHHHHHH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
.-.+++|+|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999998853
No 377
>PRK14528 adenylate kinase; Provisional
Probab=94.18 E-value=0.12 Score=53.49 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998765
No 378
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.17 E-value=1 Score=53.29 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=46.6
Q ss_pred ccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh-ccCCceEEEeeccchhccCcChHHHHHHHHHH
Q 046314 187 LVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS-NEFEGNCFIENVREEIENGVGLVHLHKQVVSL 265 (1137)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 265 (1137)
..|...-+..|.+++. +-..-.++.|-|.+|+|||++|..++..+. .+-..++|+. -.....++...+++.
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-------lEm~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-------LEMSAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-------CCCCHHHHHHHHHHH
Confidence 4455555555555553 334456889999999999999999997654 3333345543 234556666666665
Q ss_pred Hh
Q 046314 266 LL 267 (1137)
Q Consensus 266 l~ 267 (1137)
..
T Consensus 246 ~~ 247 (421)
T TIGR03600 246 KS 247 (421)
T ss_pred Hc
Confidence 44
No 379
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.39 Score=54.73 Aligned_cols=149 Identities=16% Similarity=0.160 Sum_probs=78.3
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcC
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRR 288 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 288 (1137)
|--.++|+||.|||++..++++.+. |+ ++.-.+.+ +. +-.+ ++.++.. ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~-v~---~n~d-Lr~LL~~---------------------t~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTE-VK---LDSD-LRHLLLA---------------------TP 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeecc-cc---CcHH-HHHHHHh---------------------CC
Confidence 5567999999999999999998663 33 22222222 11 1112 2222221 13
Q ss_pred CceEEEEeCCCCHHH--------------------HHHHhcccC--CCCC-CCEEE-EEeCChhhHHh-----hCCCCcc
Q 046314 289 TKVFFVLDDVSKFEQ--------------------LKYFVGWLH--GFCP-GSRIV-VTTRDKQVLRK-----HGVNDEY 339 (1137)
Q Consensus 289 kr~LlVLDdv~~~~~--------------------l~~l~~~~~--~~~~-gsrII-iTTR~~~v~~~-----~~~~~~~ 339 (1137)
.|-+||+.|++..-+ +.-|+..++ |... +-||| .||-.++-+.. -.++-
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm-- 363 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM-- 363 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee--
Confidence 445666777643210 222333332 2222 34765 56655442221 12333
Q ss_pred EEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhh
Q 046314 340 VYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSL 394 (1137)
Q Consensus 340 ~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L 394 (1137)
.+.+..=+.+.-..|+..+..... + ..++.+|.+...|.-+.=..++..|
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 678888888888899988874432 2 2344455555555544444444444
No 380
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.13 E-value=0.078 Score=60.52 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=39.3
Q ss_pred CCccchhhHHHHHHHhhccC------------CCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 185 KGLVGLNSRIECIKSLLCVG------------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
..+||.+...+.+.-.+... ....+.|.++|++|+|||++|++++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 35889888888876555421 11246789999999999999999999875544
No 381
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.11 E-value=0.3 Score=52.78 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=35.9
Q ss_pred HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 196 CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.|.++|..+-..-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444556555556789999999999999999998776545556677765
No 382
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.09 E-value=0.083 Score=53.36 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=59.4
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCC-CCccHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGG-PNIPAYTLERL 286 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~-~~~~~~l~~~L 286 (1137)
-.+++|.|..|.|||||.+.++-... ...+.+++.... ... .......+. .+. -....++ ....-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~--~~~-~~~~~~~~~---~i~-~~~qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE--VSF-ASPRDARRA---GIA-MVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE--CCc-CCHHHHHhc---CeE-EEEecCHHHHHHHHHHHHH
Confidence 46899999999999999999976543 344555554211 110 111110000 000 0000111 11122334556
Q ss_pred cCCceEEEEeCCCC---HHH---HHHHhcccCCCCCCCEEEEEeCChhhHHh
Q 046314 287 RRTKVFFVLDDVSK---FEQ---LKYFVGWLHGFCPGSRIVVTTRDKQVLRK 332 (1137)
Q Consensus 287 ~~kr~LlVLDdv~~---~~~---l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 332 (1137)
-.++-++++|+-.. .+. +..++..+. ..|..||++|.+...+..
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFE 147 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence 67778899998632 222 323332221 246788999988765443
No 383
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.07 E-value=0.088 Score=60.14 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=39.9
Q ss_pred CCccchhhHHHHHHHhhcc---------CC---CCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 185 KGLVGLNSRIECIKSLLCV---------GF---PDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~---------~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
..++|.+..++.+..++.. +. ...+.|.++|++|+|||+||+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 3589999998888777642 00 1146789999999999999999999875443
No 384
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.04 E-value=0.042 Score=56.13 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.4
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...|.|+|++|+||||+|++++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999873
No 385
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.04 E-value=0.31 Score=49.06 Aligned_cols=117 Identities=15% Similarity=0.026 Sum_probs=60.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcc--c--cCC--C------
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGER--I--EMG--G------ 275 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~--~--~~~--~------ 275 (1137)
...|-|++..|-||||.|..++-+...+=-.++++..+.. ....+-....+.+ .+.-.. . ... .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg--~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG--AWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC--CcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 4678888889999999999998876555444443332222 1112222222221 110000 0 000 0
Q ss_pred --CCccHHHHHhhcCCce-EEEEeCCCCHHH-----HHHHhcccCCCCCCCEEEEEeCChh
Q 046314 276 --PNIPAYTLERLRRTKV-FFVLDDVSKFEQ-----LKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 276 --~~~~~~l~~~L~~kr~-LlVLDdv~~~~~-----l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
.+..+..++.+...++ |+|||.+...-. .+.+...+....++..||+|-|+..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 0112333444544444 999999842211 2233333333456789999999864
No 386
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.03 E-value=0.05 Score=59.41 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEE
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCF 241 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 241 (1137)
.++.+|+|.|.+|.|||||+..+...+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 468999999999999999999999998776644443
No 387
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.02 E-value=0.043 Score=56.87 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+..+|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 388
>PRK09354 recA recombinase A; Provisional
Probab=94.01 E-value=0.12 Score=58.06 Aligned_cols=48 Identities=33% Similarity=0.424 Sum_probs=37.3
Q ss_pred HHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 196 CIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 196 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4445665 34456789999999999999999999887766667778876
No 389
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.00 E-value=0.13 Score=54.85 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=35.8
Q ss_pred cHHHHHhhcCCceEEEEeC----CCC--HHHHHHHhcccCCCCCCCEEEEEeCChhhHHh
Q 046314 279 PAYTLERLRRTKVFFVLDD----VSK--FEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRK 332 (1137)
Q Consensus 279 ~~~l~~~L~~kr~LlVLDd----v~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 332 (1137)
...+.+.|..++=|+|||. ||- ...+-.++..+.. .|..||++|-|-+....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 3456778889999999996 333 3335555555542 38899999999776544
No 390
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.97 E-value=0.16 Score=55.43 Aligned_cols=56 Identities=30% Similarity=0.367 Sum_probs=42.0
Q ss_pred HhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHH
Q 046314 199 SLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLH 259 (1137)
Q Consensus 199 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~ 259 (1137)
.+|..+-+.-+++=|+|+.|.||||+|.+++-..+..-..++|++ ....+++.++.
T Consensus 51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID-----tE~~l~p~r~~ 106 (279)
T COG0468 51 EALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID-----TEHALDPERAK 106 (279)
T ss_pred HHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe-----CCCCCCHHHHH
Confidence 344444456789999999999999999999887777777889987 44445555443
No 391
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.95 E-value=0.17 Score=51.63 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=59.6
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcccc---------CC-CC
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIE---------MG-GP 276 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~---------~~-~~ 276 (1137)
.-.+++|.|..|.|||||.+.++.... ...+.+++.... ... .........+ ..+.....- .+ +.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~--~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD--LRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE--hhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHH
Confidence 346899999999999999999987543 234555543210 100 0001110000 000000000 00 11
Q ss_pred CccHHHHHhhcCCceEEEEeCCCC------HHHHHHHhcccCCCCCCCEEEEEeCChhhHH
Q 046314 277 NIPAYTLERLRRTKVFFVLDDVSK------FEQLKYFVGWLHGFCPGSRIVVTTRDKQVLR 331 (1137)
Q Consensus 277 ~~~~~l~~~L~~kr~LlVLDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 331 (1137)
...-.+.+.+..++-++++|+-.. .+.+..++..+. .+..||++|.+.....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~ 159 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHH
Confidence 111223445567778999998632 222334443332 3567899998887664
No 392
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.90 E-value=0.074 Score=54.47 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=27.6
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
...+|+|.|++|+||||+|+.++..+...-....++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 346899999999999999999999875432233444
No 393
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.89 E-value=0.15 Score=57.12 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=39.8
Q ss_pred HHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh--h----ccCCceEEEeeccchhccCcChHHHHH
Q 046314 195 ECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV--S----NEFEGNCFIENVREEIENGVGLVHLHK 260 (1137)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~----~~F~~~~~~~~~~~~~s~~~~~~~l~~ 260 (1137)
..|..+|..+-..-+++-|+|.+|+|||+||.+++-.. . ..=..++|++ ....+...++.+
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId-----tE~~f~~eRi~~ 149 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID-----TEGTFRPDRIRA 149 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE-----cCCCCCHHHHHH
Confidence 34555665444556889999999999999998876432 2 1224567776 444455666554
No 394
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.88 E-value=0.079 Score=50.90 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.-.+|.+.|.-|.||||+++.++..+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345899999999999999999998753
No 395
>PRK06547 hypothetical protein; Provisional
Probab=93.85 E-value=0.059 Score=54.76 Aligned_cols=27 Identities=44% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
....+|+|.|.+|+||||+|+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998864
No 396
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.84 E-value=0.11 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEccCCChhhHHHHHHHHHh
Q 046314 211 VGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998765
No 397
>PRK13947 shikimate kinase; Provisional
Probab=93.82 E-value=0.047 Score=55.68 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
-|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987543
No 398
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.80 E-value=0.082 Score=55.37 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
+...+|+|+|++|+||||||+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45679999999999999999999998755433455553
No 399
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.79 E-value=0.12 Score=57.57 Aligned_cols=60 Identities=27% Similarity=0.269 Sum_probs=41.9
Q ss_pred CCCCCccchhhHHHHH---HHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEE
Q 046314 182 DSSKGLVGLNSRIECI---KSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCF 241 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 241 (1137)
....++||.....+.. .+++..+.-.-+.|.+.|++|.|||+||.++++.+..+.+.+..
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 3457899998777664 44554443345889999999999999999999999988775543
No 400
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.76 E-value=0.44 Score=48.69 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=62.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHh----CccccCCCC------
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLL----GERIEMGGP------ 276 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~----~~~~~~~~~------ 276 (1137)
....|-|+|..|-||||.|..++-+...+=-.+.++..+.. . ...+-....+.+ ..+. +........
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg-~-~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKG-A-WSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC-C-CccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHH
Confidence 34689999999999999999998876555444444443322 1 011222222221 0000 000000000
Q ss_pred ----CccHHHHHhhcCCc-eEEEEeCCCCHHH-----HHHHhcccCCCCCCCEEEEEeCChh
Q 046314 277 ----NIPAYTLERLRRTK-VFFVLDDVSKFEQ-----LKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 277 ----~~~~~l~~~L~~kr-~LlVLDdv~~~~~-----l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
+..+..++.+...+ =|+|||.+...-. .+.+...+....++..||+|-|+..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11233344454444 4999999843221 3333333333456789999999864
No 401
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.76 E-value=0.49 Score=46.92 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+|.|+|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998775
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.74 E-value=0.68 Score=54.71 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
..++++++|+.|+||||++..++..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 3579999999999999999999987643
No 403
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.71 E-value=0.19 Score=55.62 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
..++++++|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 46799999999999999999999877543
No 404
>PRK14529 adenylate kinase; Provisional
Probab=93.70 E-value=0.19 Score=53.08 Aligned_cols=91 Identities=22% Similarity=0.213 Sum_probs=49.4
Q ss_pred EEEEccCCChhhHHHHHHHHHhhccC-CceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCC
Q 046314 211 VGIWGMGGIGKTTLAKALFNQVSNEF-EGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRT 289 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 289 (1137)
|.|.|++|+||||+|+.++.++.-.+ ...-. +++.+.....+....++++ ......+..-....+.+++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdl---lr~~i~~~t~lg~~i~~~i----~~G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAI---FREHIGGGTELGKKAKEYI----DRGDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchh---hhhhccCCChHHHHHHHHH----hccCcchHHHHHHHHHHHHhcc
Confidence 77899999999999999998764222 11111 1111211222222222222 2222233333455566776432
Q ss_pred -ceEEEEeCC-CCHHHHHHHh
Q 046314 290 -KVFFVLDDV-SKFEQLKYFV 308 (1137)
Q Consensus 290 -r~LlVLDdv-~~~~~l~~l~ 308 (1137)
.-=+|||+. .+.+|.+.|.
T Consensus 76 ~~~g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 76 GKNGWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred CCCcEEEeCCCCCHHHHHHHH
Confidence 345899999 4566766654
No 405
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.68 E-value=5.8 Score=44.19 Aligned_cols=155 Identities=9% Similarity=0.051 Sum_probs=86.6
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhc--------c-CC-ceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCC
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSN--------E-FE-GNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPN 277 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~-F~-~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~ 277 (1137)
.++..++|..|+||+++|+++.+.+-. . .+ ...+++ .. .......++. ++...+.-.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~---g~~i~vd~Ir-~l~~~~~~~-------- 84 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IF---DKDLSKSEFL-SAINKLYFS-------- 84 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cC---CCcCCHHHHH-HHHHHhccC--------
Confidence 467779999999999999999998611 1 11 122221 00 1112222222 222221100
Q ss_pred ccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCC-hhhHHhhCCCCccEEEEccCCHHHHHHH
Q 046314 278 IPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRD-KQVLRKHGVNDEYVYEVERLNEDEGLEL 354 (1137)
Q Consensus 278 ~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~L 354 (1137)
..-.+++=++|+|+++.. .....|+..+....+++.+|++|.+ ..++.... ....++++.+++.++..+.
T Consensus 85 ------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~-SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 85 ------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV-SRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred ------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH-hCeEEEECCCCCHHHHHHH
Confidence 000135667888998764 3466777777666677777765544 44443321 2234899999999999888
Q ss_pred HHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 355 FYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 355 f~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
+.... .+ .+.+..++..++|.=-|++.+
T Consensus 158 l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 158 LLSKN-----KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHcC-----CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 76541 11 234555666666622444443
No 406
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.68 E-value=0.072 Score=54.69 Aligned_cols=26 Identities=54% Similarity=0.678 Sum_probs=22.9
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
+|+|.|.+|+||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 407
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.68 E-value=0.11 Score=59.54 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=55.3
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCC--ceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFE--GNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL 286 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 286 (1137)
..|.|.|+.|.||||+++++.+.+....+ ..+-+++--+..-. +...+ .. ....+...+.....+.++..|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~--~~~~~----~~-~~q~evg~~~~~~~~~l~~aL 222 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG--SPDDL----LP-PAQSQIGRDVDSFANGIRLAL 222 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC--CCcee----ec-ccccccCCCccCHHHHHHHhh
Confidence 46889999999999999999987754432 23333322221000 00000 00 000001112223456678888
Q ss_pred cCCceEEEEeCCCCHHHHHHHh
Q 046314 287 RRTKVFFVLDDVSKFEQLKYFV 308 (1137)
Q Consensus 287 ~~kr~LlVLDdv~~~~~l~~l~ 308 (1137)
+..+=.|+++.+.+.+.++..+
T Consensus 223 R~~PD~I~vGEiRd~et~~~al 244 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAV 244 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHH
Confidence 9999999999999998877544
No 408
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.67 E-value=0.096 Score=54.22 Aligned_cols=92 Identities=24% Similarity=0.197 Sum_probs=52.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccc---cCCCCCccHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERI---EMGGPNIPAYTLE 284 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~---~~~~~~~~~~l~~ 284 (1137)
-..++|.|..|.||||+++.+...+... ...+.+.+..+ ..... .... ++..... ........+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E-~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAE-LQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccc-cCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 4689999999999999999998876533 23333432222 10000 0000 0000000 0112234455567
Q ss_pred hhcCCceEEEEeCCCCHHHHHHHh
Q 046314 285 RLRRTKVFFVLDDVSKFEQLKYFV 308 (1137)
Q Consensus 285 ~L~~kr~LlVLDdv~~~~~l~~l~ 308 (1137)
.++..+=.++++.+.+.+.++.+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 777788899999999887665443
No 409
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.66 E-value=0.12 Score=58.15 Aligned_cols=110 Identities=21% Similarity=0.198 Sum_probs=61.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCc-ChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGV-GLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
....++|.|..|.||||+++++...+.... ..+.+.+..+ ..-.. ....+ .. .............+.+...
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~E-l~~~~~~~~~l----~~--~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTRE-IFLPHPNYVHL----FY--SKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccc-cCCCCCCEEEE----Ee--cCCCCCcCccCHHHHHHHH
Confidence 346899999999999999999987665433 3444443333 11110 00000 00 0000011123344566777
Q ss_pred hcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCE-EEEEeCChh
Q 046314 286 LRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSR-IVVTTRDKQ 328 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsr-IIiTTR~~~ 328 (1137)
|+..+=.+|+|.+...+.++.+.. .. .|.. ++.|+....
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a-~~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRA-VN---TGHPGSITTLHAGS 254 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHH-Hh---cCCCeEEEEEeCCC
Confidence 888888999999998766654332 22 2332 466665544
No 410
>PRK15115 response regulator GlrR; Provisional
Probab=93.63 E-value=3.9 Score=48.85 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..++|....+.++.+....-......|.|.|.+|.|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888777776655443222333457799999999999999997754
No 411
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.62 E-value=0.071 Score=58.07 Aligned_cols=63 Identities=29% Similarity=0.357 Sum_probs=39.0
Q ss_pred HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh--hcc----CCceEEEeeccchhccCcChHHHHHHHHH
Q 046314 196 CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV--SNE----FEGNCFIENVREEIENGVGLVHLHKQVVS 264 (1137)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~----F~~~~~~~~~~~~~s~~~~~~~l~~~ll~ 264 (1137)
.|.++|..+-..-.+.=|+|.+|+|||+||..++-.. ... =..++|++ ....+...++.+ ++.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid-----Te~~f~~~Rl~~-i~~ 94 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID-----TEGTFSPERLQQ-IAE 94 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE-----SSSSS-HHHHHH-HHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe-----CCCCCCHHHHHH-Hhh
Confidence 4555664333334688899999999999999887543 222 23467776 344455665543 443
No 412
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.60 E-value=0.24 Score=49.68 Aligned_cols=54 Identities=7% Similarity=0.117 Sum_probs=36.7
Q ss_pred cHHHHHhhcCCceEEEEeC----CCCHHHHHHH--hcccCCCCCCCEEEEEeCChhhHHhhC
Q 046314 279 PAYTLERLRRTKVFFVLDD----VSKFEQLKYF--VGWLHGFCPGSRIVVTTRDKQVLRKHG 334 (1137)
Q Consensus 279 ~~~l~~~L~~kr~LlVLDd----v~~~~~l~~l--~~~~~~~~~gsrIIiTTR~~~v~~~~~ 334 (1137)
...+.+.+-+++-+++-|. ++..-.|+-+ +..+ ...|..||++|.|.++...+.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhcc
Confidence 3445666778899999885 4444444432 3333 247999999999999877664
No 413
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.59 E-value=0.056 Score=55.27 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=23.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 414
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.57 E-value=0.06 Score=55.15 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.0
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
++|.+.|++|+||||+|+++......
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 58999999999999999999887643
No 415
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.55 E-value=0.18 Score=51.44 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=25.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
-.+++|.|..|.|||||++.++.... ...+.+++
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~ 61 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRL 61 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEE
Confidence 45899999999999999999987543 23444444
No 416
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.52 E-value=0.15 Score=54.26 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=29.9
Q ss_pred HHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 194 IECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
..++.+.+....++..+|||.|.||.|||||..++...++.+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 334444444444567899999999999999999999877654
No 417
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.26 Score=59.28 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=60.5
Q ss_pred cCCCCC-CCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccc
Q 046314 179 ISSDSS-KGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVRE 247 (1137)
Q Consensus 179 ~~~~~~-~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~ 247 (1137)
..|.+. +++=|.++-..+|.+-+.. +-.+..-|.++|++|.|||-+|++|+.+..=.| +.
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS---- 735 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS---- 735 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee----
Confidence 334444 6677888888888776543 112344688999999999999999998765433 22
Q ss_pred hhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC
Q 046314 248 EIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK 300 (1137)
Q Consensus 248 ~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 300 (1137)
+ .|.+ ++..-.+ .+++++.+.+.+.-.-+++.|.||.++.
T Consensus 736 -V---KGPE-----LLNMYVG----qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 736 -V---KGPE-----LLNMYVG----QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -e---cCHH-----HHHHHhc----chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1 1111 1111111 1223333333334456899999999854
No 418
>PRK14526 adenylate kinase; Provisional
Probab=93.52 E-value=0.16 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEccCCChhhHHHHHHHHHh
Q 046314 211 VGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
|+|+|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998765
No 419
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.47 E-value=0.31 Score=56.95 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=54.1
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcc-c---cCCCCCc----
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGER-I---EMGGPNI---- 278 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~-~---~~~~~~~---- 278 (1137)
.-+.++|.|.+|+|||||+..++.....+...++-+.-+++ +...+.++.++++..-.... . .......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE---R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc---CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34679999999999999999998877655444444444443 22334455555543211111 0 0011101
Q ss_pred -----cHHHHHhh---cCCceEEEEeCCCCHHH
Q 046314 279 -----PAYTLERL---RRTKVFFVLDDVSKFEQ 303 (1137)
Q Consensus 279 -----~~~l~~~L---~~kr~LlVLDdv~~~~~ 303 (1137)
.-.+.+++ +++++|+++|++....+
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~ 252 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQ 252 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHHHHH
Confidence 11123444 67999999999965433
No 420
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.47 E-value=0.18 Score=55.64 Aligned_cols=28 Identities=32% Similarity=0.308 Sum_probs=24.1
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+.+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998876554
No 421
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.46 E-value=2.3 Score=47.83 Aligned_cols=48 Identities=27% Similarity=0.234 Sum_probs=32.8
Q ss_pred EEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCCchhH
Q 046314 340 VYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGNPLAL 387 (1137)
Q Consensus 340 ~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~PLal 387 (1137)
+++|++++.+|+..++..++-..-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 689999999999999988874432222 122344555566669999654
No 422
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.44 E-value=0.62 Score=45.67 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=34.0
Q ss_pred HHHHHHhhhcceeEEEeccccccchhhHHHHHHHHHhhhcCCCeEEEEEeecC
Q 046314 54 PALMKAIEGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVS 106 (1137)
Q Consensus 54 ~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~~~~~~~~~~~v~pvfy~v~ 106 (1137)
.++.++|++++..++|+......+.+. .++.+.+.... .+..++-|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 467899999999999998765555443 25555554331 3446677766666
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.44 E-value=0.45 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 424
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.38 E-value=0.49 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=21.1
Q ss_pred EEEEEEccCCChhhHHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
++++|.|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998753
No 425
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.35 E-value=0.17 Score=48.56 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=4.3
Q ss_pred ccCCCCCcEEecc
Q 046314 748 VECLTNLEYLYIN 760 (1137)
Q Consensus 748 i~~l~~L~~L~L~ 760 (1137)
+..+++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3334444444444
No 426
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.34 E-value=1.1 Score=53.90 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=39.3
Q ss_pred CCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 184 SKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.++++|....++++.+.+..-.....-|.|.|..|.||+++|+.+++.-
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 3569999999998888775433344678899999999999999998743
No 427
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.34 E-value=0.072 Score=60.85 Aligned_cols=96 Identities=20% Similarity=0.140 Sum_probs=56.2
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCc---eEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEG---NCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLE 284 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 284 (1137)
-..|.|+|+.|.||||+++.+...+....+. ++.+.+--+ +........ ...+...............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-----~~~~~~~~~-~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-----FVYDEIETI-SASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-----Eeccccccc-cceeeeeeccccccCHHHHHHH
Confidence 4799999999999999999999887554432 233322211 111111000 0000000011112334566688
Q ss_pred hhcCCceEEEEeCCCCHHHHHHHhc
Q 046314 285 RLRRTKVFFVLDDVSKFEQLKYFVG 309 (1137)
Q Consensus 285 ~L~~kr~LlVLDdv~~~~~l~~l~~ 309 (1137)
.|+..+-.+++..+.+.+..+..+.
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAALE 232 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHHH
Confidence 8899999999999999888765443
No 428
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.32 E-value=0.4 Score=50.38 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=19.5
Q ss_pred EEEEEEccCCChhhHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALF 229 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~ 229 (1137)
.+++|+|..|.|||||..+++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 399999999999999999985
No 429
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.31 E-value=0.055 Score=55.57 Aligned_cols=23 Identities=57% Similarity=0.655 Sum_probs=21.3
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 430
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.28 E-value=0.03 Score=35.30 Aligned_cols=18 Identities=39% Similarity=0.722 Sum_probs=9.3
Q ss_pred CCEEeecCCCCCCccccc
Q 046314 836 LNWLNLNNCALTAIPEEI 853 (1137)
Q Consensus 836 L~~L~Ls~n~l~~lp~~l 853 (1137)
|++|+|++|+++.+|+.+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 431
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.24 E-value=0.38 Score=50.05 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEccCCChhhHHHHHHHHHh
Q 046314 211 VGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998874
No 432
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.42 Score=56.79 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=91.7
Q ss_pred CCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCc
Q 046314 185 KGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGV 253 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~ 253 (1137)
..+-|....+..+..+... +...++-+..+|++|.|||-+|++|+++.. ..+|..+..+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~pe------ 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPE------ 253 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHH------
Confidence 3455666666666655431 123467899999999999999999998765 3334433322
Q ss_pred ChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCC-ceEEEEeCCCCHH------------HHHHHhcccCCCCCCCEE
Q 046314 254 GLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRT-KVFFVLDDVSKFE------------QLKYFVGWLHGFCPGSRI 320 (1137)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~------------~l~~l~~~~~~~~~gsrI 320 (1137)
+++...++ ....+.+.+.+..+.+ +..|.+|+++... ....+.....+.++.+++
T Consensus 254 --------li~k~~gE----te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~v 321 (693)
T KOG0730|consen 254 --------LISKFPGE----TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKV 321 (693)
T ss_pred --------HHHhcccc----hHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcE
Confidence 11111111 1112223334445555 7777777764321 123333333444444444
Q ss_pred --EEEeCChhhH----HhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc
Q 046314 321 --VVTTRDKQVL----RKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 321 --IiTTR~~~v~----~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P 384 (1137)
|-|||.+.-+ +.-..+. -+++.-.+..+-.+++..+.-+..... ......++..+.|.-
T Consensus 322 ivl~atnrp~sld~alRRgRfd~--ev~IgiP~~~~RldIl~~l~k~~~~~~---~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRRGRFDR--EVEIGIPGSDGRLDILRVLTKKMNLLS---DVDLEDIAVSTHGYV 386 (693)
T ss_pred EEEEecCCccccChhhhcCCCcc--eeeecCCCchhHHHHHHHHHHhcCCcc---hhhHHHHHHHccchh
Confidence 3355544322 1112333 677888887877777777664443331 122244455555543
No 433
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.18 E-value=0.06 Score=57.23 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.5
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
+|||.|..|+||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999987753
No 434
>PRK14531 adenylate kinase; Provisional
Probab=93.15 E-value=0.28 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.5
Q ss_pred EEEEEEccCCChhhHHHHHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+.|.|.|++|+||||+|+.++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998875
No 435
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.15 E-value=0.77 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999987654
No 436
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.15 E-value=0.34 Score=56.82 Aligned_cols=93 Identities=22% Similarity=0.309 Sum_probs=52.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccC-CceEEEeeccchhccCcChHHHHHHHHHHHhCcc-cc---C-CCC----
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEF-EGNCFIENVREEIENGVGLVHLHKQVVSLLLGER-IE---M-GGP---- 276 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~-~~---~-~~~---- 276 (1137)
.-+.++|.|.+|+|||||+.+++.....+. +.++| .-+++ +...+.++...+...-...+ .- . +..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~-~liGE---R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R 217 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVF-AGVGE---RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEE-EcCCc---chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHH
Confidence 346799999999999999999998776443 44444 33443 12233444444433211111 00 0 111
Q ss_pred ----CccHHHHHhh---cCCceEEEEeCCCCHHH
Q 046314 277 ----NIPAYTLERL---RRTKVFFVLDDVSKFEQ 303 (1137)
Q Consensus 277 ----~~~~~l~~~L---~~kr~LlVLDdv~~~~~ 303 (1137)
...-.+.+++ +++++|+++|++....+
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~ 251 (461)
T PRK12597 218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQ 251 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeccchHHHH
Confidence 0111223444 37899999999955443
No 437
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.14 E-value=1.2 Score=53.54 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=37.2
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..++|....+.++.+.+..-......+.|.|.+|.||+++|+.+...-.
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~ 182 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP 182 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588988888887776654333345678999999999999999987543
No 438
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.12 E-value=0.24 Score=53.68 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=51.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh----ccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcc-cc----CCCCC
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS----NEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGER-IE----MGGPN 277 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~----~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~-~~----~~~~~ 277 (1137)
.-+.++|.|-.|+|||+|+..+.++.. .+-+.++|. -+++ +.....++.+++...-.... .- .+...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~-~IGe---R~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~ 143 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFA-AMGI---TMEDARFFKDDFEETGALERVVLFLNLANDPT 143 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEE-Eecc---ccHHHHHHHHHhhhcCCcceEEEEEecCCCCH
Confidence 346789999999999999999887653 223444444 3433 12334455554443211111 00 01110
Q ss_pred --------ccHHHHHhh---cCCceEEEEeCCCCHHH
Q 046314 278 --------IPAYTLERL---RRTKVFFVLDDVSKFEQ 303 (1137)
Q Consensus 278 --------~~~~l~~~L---~~kr~LlVLDdv~~~~~ 303 (1137)
..-.+.+++ +++++|+++||+....+
T Consensus 144 ~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 144 IERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 111123343 26899999999966544
No 439
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=93.11 E-value=1.3 Score=49.87 Aligned_cols=54 Identities=26% Similarity=0.120 Sum_probs=35.1
Q ss_pred ccEEEEccCCHHHHHHHHHhhcccC----CCCChhHHHHHHHHHHHhCCCchhHHHHhhhh
Q 046314 338 EYVYEVERLNEDEGLELFYKYAFRQ----SHCPEHLTALSKKAVRYAEGNPLALEVLGSSL 394 (1137)
Q Consensus 338 ~~~~~v~~L~~~ea~~Lf~~~a~~~----~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L 394 (1137)
..+++|+..+.+|+.++..-+.-.. ..+. ++.-+++.-..+|+|--++-++.++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 3478899999999988876664221 1111 3444666777799996666665554
No 440
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.08 E-value=0.56 Score=62.62 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.-++-|.++|++|.|||.||++++...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 346778999999999999999999864
No 441
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.08 E-value=0.44 Score=55.49 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=54.1
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcc-c----cCCCCC----
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGER-I----EMGGPN---- 277 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~-~----~~~~~~---- 277 (1137)
.-+.++|.|.+|+|||||+..+......+...++.+.-+++ +...+.++.+++...-.... . ..+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE---R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC---CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34679999999999999999998876554444444444544 22334455555543211111 0 011111
Q ss_pred ----ccHHHHHhh---cCCceEEEEeCCCCHHH
Q 046314 278 ----IPAYTLERL---RRTKVFFVLDDVSKFEQ 303 (1137)
Q Consensus 278 ----~~~~l~~~L---~~kr~LlVLDdv~~~~~ 303 (1137)
..-.+.+++ +++++|+++||+....+
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~ 251 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQ 251 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhHHHH
Confidence 111223444 46899999999966443
No 442
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.06 E-value=0.15 Score=51.09 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=60.5
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCC-CCCccHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMG-GPNIPAYTLERL 286 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~-~~~~~~~l~~~L 286 (1137)
-.+++|.|..|.|||||++.+...+. ...+.+++.... ... ......... +.-- ...+ +....-.+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~--~~~-~~~~~~~~~----i~~~-~qlS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD--IAK-LPLEELRRR----IGYV-PQLSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE--ccc-CCHHHHHhc----eEEE-eeCCHHHHHHHHHHHHH
Confidence 36899999999999999999987553 345555554211 100 001111110 0000 0011 111122234555
Q ss_pred cCCceEEEEeCCCC---HHH---HHHHhcccCCCCCCCEEEEEeCChhhHHhh
Q 046314 287 RRTKVFFVLDDVSK---FEQ---LKYFVGWLHGFCPGSRIVVTTRDKQVLRKH 333 (1137)
Q Consensus 287 ~~kr~LlVLDdv~~---~~~---l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 333 (1137)
..++-++++|+... ... +..++.... ..+..+|++|.+.......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA 146 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence 56678999998742 222 333332222 2356789999888766543
No 443
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.05 E-value=0.25 Score=55.21 Aligned_cols=151 Identities=18% Similarity=0.171 Sum_probs=76.1
Q ss_pred ccchhhHHHHHHHhhccCC---------------CCeEEEEEEccCCChhhHHHHHHHHHhhccCC----c---eEEE-e
Q 046314 187 LVGLNSRIECIKSLLCVGF---------------PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE----G---NCFI-E 243 (1137)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----~---~~~~-~ 243 (1137)
..|...++..|.+.+-... ..--++.|+|..|.||||+.+.+.-.....-+ . .+=+ .
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 4566667777666553211 12247899999999999999998764322111 0 0000 0
Q ss_pred e-----ccchhccCcChHHHHHHHHHHHhC-------------cccc---------CCCCCccHHHHHhhcCCceEEEEe
Q 046314 244 N-----VREEIENGVGLVHLHKQVVSLLLG-------------ERIE---------MGGPNIPAYTLERLRRTKVFFVLD 296 (1137)
Q Consensus 244 ~-----~~~~~s~~~~~~~l~~~ll~~l~~-------------~~~~---------~~~~~~~~~l~~~L~~kr~LlVLD 296 (1137)
| +-......++-..+++++.+...+ .+.. .+++.--..+...+..+.-+++.|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 0 000011122222344444333322 2110 022222334456667787889999
Q ss_pred CCCCH---HHHHHHhcccCCC--CCCCEEEEEeCChhhHHhhCCCC
Q 046314 297 DVSKF---EQLKYFVGWLHGF--CPGSRIVVTTRDKQVLRKHGVND 337 (1137)
Q Consensus 297 dv~~~---~~l~~l~~~~~~~--~~gsrIIiTTR~~~v~~~~~~~~ 337 (1137)
..... .....++..+... ..|+.+++.|+.+++.+++..+.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 87432 1111222211111 25777888888888877765554
No 444
>PRK13949 shikimate kinase; Provisional
Probab=93.02 E-value=0.075 Score=53.94 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=21.9
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998774
No 445
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.99 E-value=0.13 Score=50.25 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=26.5
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhc-cCCceEEEe
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSN-EFEGNCFIE 243 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~ 243 (1137)
++|+|+|..|+|||||++.+.+.+.+ .+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 47999999999999999999998864 455444444
No 446
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.96 E-value=0.051 Score=59.72 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+-|.++|+.|+|||++++.+.....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CcEEEECCCCCchhHHHHhhhccCC
Confidence 5678999999999999999887543
No 447
>PHA02774 E1; Provisional
Probab=92.96 E-value=0.32 Score=57.67 Aligned_cols=41 Identities=24% Similarity=0.422 Sum_probs=30.9
Q ss_pred hHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 192 SRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.-+..+..++. +.++...+.|+|++|.|||.+|..+.+-+.
T Consensus 419 ~fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455666653 334556899999999999999999998764
No 448
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.93 E-value=0.13 Score=56.35 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=30.3
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
..-.++.|.|.+|.|||++|.+++.....+=+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678999999999999999998776544555677765
No 449
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.91 E-value=0.26 Score=50.34 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=26.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
.-.+++|.|..|.|||||++.++.... ...+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~ 59 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKV 59 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEE
Confidence 346899999999999999999877543 23444444
No 450
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.90 E-value=0.23 Score=54.52 Aligned_cols=44 Identities=30% Similarity=0.353 Sum_probs=36.9
Q ss_pred hhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 200 LLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 200 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.+..+-+.-+++.|.|.+|+|||++|.++..+.......++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34344466789999999999999999999998888888888875
No 451
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.88 E-value=0.068 Score=56.00 Aligned_cols=23 Identities=48% Similarity=0.751 Sum_probs=21.2
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+|||.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998866
No 452
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.87 E-value=6.2 Score=43.62 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=43.7
Q ss_pred CCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHh
Q 046314 288 RTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYK 357 (1137)
Q Consensus 288 ~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~ 357 (1137)
+++=++|+|+++.. .....|+..+....+++.+|.+|.+.. ++.... .....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~-SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIK-SRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHH-HcceeeeCCC-cHHHHHHHHHH
Confidence 45568899999763 457778887776667777777776654 444332 2223677766 66666666653
No 453
>PRK04328 hypothetical protein; Provisional
Probab=92.87 E-value=0.71 Score=50.22 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=35.0
Q ss_pred HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 196 CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.|.++|..+-..-.++.|.|.+|.|||+||.++......+-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344455444455689999999999999999998776544556667765
No 454
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.86 E-value=0.07 Score=52.07 Aligned_cols=27 Identities=33% Similarity=0.640 Sum_probs=22.6
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
.|+|+|+.|+|||||++.+.......|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999988765443
No 455
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.84 E-value=0.15 Score=61.14 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=39.5
Q ss_pred HHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 194 IECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
+.++.++|..+-..-.++.|.|.+|+||||||.+++.....+-+.++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666777655566789999999999999999999988766656667764
No 456
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.83 E-value=0.12 Score=52.14 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
...+++|+|..|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887653
No 457
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.78 E-value=0.18 Score=61.93 Aligned_cols=58 Identities=29% Similarity=0.348 Sum_probs=44.6
Q ss_pred CCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEEee
Q 046314 183 SSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFIEN 244 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~ 244 (1137)
..++++|.++.++.+...+..+ +.+.++|++|+||||+|+++++.+... |...+++.|
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n 74 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN 74 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC
Confidence 3467899999998888877533 366699999999999999999987654 444555553
No 458
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=92.75 E-value=0.25 Score=46.86 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=51.0
Q ss_pred EEEcccccccCCchHHHHHHHHhcCCCcEEE-cCCCCCCCcchHHHHHHhhhcceeEEEeccc
Q 046314 12 VFLSFRGEDTRENFTSHLYAALCGKKIKTFI-DEDLNRGDEISPALMKAIEGSKISVIIFSKD 73 (1137)
Q Consensus 12 vFis~~~~d~r~~~~~~l~~~l~~~g~~~~~-d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~ 73 (1137)
|||.|. +| ..+++.+...|+..|+.+.+ ++....|..+.+.+.+++.++..+||+++|+
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899996 77 57889999999988887644 3356889999999999999999999999984
No 459
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.74 E-value=0.088 Score=53.23 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=20.9
Q ss_pred EEEEccCCChhhHHHHHHHHHhhc
Q 046314 211 VGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998754
No 460
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.73 E-value=0.076 Score=52.76 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.4
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
++.|.|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 461
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.73 E-value=0.36 Score=51.88 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=34.5
Q ss_pred CccHHHHHhhcCCceEEEEeCC----CCHHHHH--HHhcccCCCCCCCEEEEEeCChhhHHhhC
Q 046314 277 NIPAYTLERLRRTKVFFVLDDV----SKFEQLK--YFVGWLHGFCPGSRIVVTTRDKQVLRKHG 334 (1137)
Q Consensus 277 ~~~~~l~~~L~~kr~LlVLDdv----~~~~~l~--~l~~~~~~~~~gsrIIiTTR~~~v~~~~~ 334 (1137)
.....+.+.|.++.=+++||.= +-..|++ .++..+. ...|..||+++-|-..+..+.
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHhC
Confidence 3345556778888888899963 2222322 2222222 135778999999988776553
No 462
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.73 E-value=0.09 Score=52.43 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEccCCChhhHHHHHHHHHh
Q 046314 211 VGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 463
>PLN02674 adenylate kinase
Probab=92.71 E-value=0.41 Score=51.31 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.0
Q ss_pred EEEEEEccCCChhhHHHHHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..|.|.|++|+||||+|+.++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999988765
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.70 E-value=0.09 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
++++|.|++|+||||||+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 465
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.70 E-value=0.084 Score=52.10 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+|.|.|.+|+||||+|+.+..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 466
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.70 E-value=0.21 Score=60.72 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=41.0
Q ss_pred CCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 183 SSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.++..+.|.+-.+.|.++.........+|.|+|++|+||||+|+.++.++..
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3456777877777777776544455668999999999999999999998764
No 467
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.67 E-value=0.38 Score=49.63 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=55.1
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhcc---CC-ceEEEeeccchhccC-cChHHHHHHHHHHHhCccccCCCCCccHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNE---FE-GNCFIENVREEIENG-VGLVHLHKQVVSLLLGERIEMGGPNIPAYTL 283 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~---F~-~~~~~~~~~~~~s~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~ 283 (1137)
.-..|.|++|+|||||.+.+++-++.. |. ..+-+.+-+.++... .+..+. ++...+..-+.-.....+..+++
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~--~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQH--GRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchh--hhhhhhhhcccchHHHHHHHHHH
Confidence 336799999999999999999865443 43 222222222212111 111111 11111110000000111121222
Q ss_pred HhhcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCC
Q 046314 284 ERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRD 326 (1137)
Q Consensus 284 ~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~ 326 (1137)
.-.+=.+|+|.+...++..++...+ ..|-++|.|..-
T Consensus 216 ---sm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 216 ---SMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred ---hcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 2345689999998887766655433 367787777643
No 468
>PRK13946 shikimate kinase; Provisional
Probab=92.67 E-value=0.087 Score=54.43 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=23.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+.|.+.|++|+||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999873
No 469
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.65 E-value=0.18 Score=58.64 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=36.2
Q ss_pred CccchhhHHHHHHHhhc-------cC-----C--CCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 186 GLVGLNSRIECIKSLLC-------VG-----F--PDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~-------~~-----~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
.+||.+..++.+...+. .. + -....|.++|++|+|||++|+.++..+...|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 47888888887754441 00 0 0135689999999999999999998764433
No 470
>PRK13948 shikimate kinase; Provisional
Probab=92.65 E-value=0.094 Score=53.74 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=24.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
..+.|.++|+.|+||||+++.+++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999988743
No 471
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.63 E-value=0.095 Score=55.11 Aligned_cols=86 Identities=21% Similarity=0.420 Sum_probs=48.4
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccc-----cCCCC-------
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERI-----EMGGP------- 276 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~-----~~~~~------- 276 (1137)
+.++|.|.+|.|||+|+..+.+....... +++. +.+ +...+.++.+++...-..+.. ..+..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d~~--V~~~-iGe---r~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDADVV--VYAL-IGE---RGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTTEE--EEEE-ESE---CHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccccce--eeee-ccc---cchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 56899999999999999999987753332 4443 222 123344555554332111110 01111
Q ss_pred -----CccHHHHHhhcCCceEEEEeCCCCHH
Q 046314 277 -----NIPAYTLERLRRTKVFFVLDDVSKFE 302 (1137)
Q Consensus 277 -----~~~~~l~~~L~~kr~LlVLDdv~~~~ 302 (1137)
...+++++ +++.+|+++||+....
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLTRWA 118 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHHHHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhHHHH
Confidence 11222222 6899999999985543
No 472
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.62 E-value=0.2 Score=55.91 Aligned_cols=87 Identities=24% Similarity=0.304 Sum_probs=54.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhcc--CCceEEEeeccchhcc-CcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNE--FEGNCFIENVREEIEN-GVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~s~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
+.+.|.|..|.||||+++++.+.+... -...+-+++..+ ..- ..+... +. .........+.++..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E-l~~~~~~~v~--------~~---~~~~~~~~~~~l~~a 200 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE-LQCAAPNVVQ--------LR---TSDDAISMTRLLKAT 200 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh-hcCCCCCEEE--------EE---ecCCCCCHHHHHHHH
Confidence 467799999999999999999888653 233444443333 110 000000 00 000111445667888
Q ss_pred hcCCceEEEEeCCCCHHHHHHH
Q 046314 286 LRRTKVFFVLDDVSKFEQLKYF 307 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~~~l~~l 307 (1137)
|+..+=.||+..+.+.+.++.+
T Consensus 201 LR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 201 LRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred hcCCCCEEEEeccCCHHHHHHH
Confidence 8888889999999998776654
No 473
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.56 E-value=0.14 Score=53.97 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=28.2
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCc
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEG 238 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 238 (1137)
+.+.+|.++||+|.||||..+.++..+..++..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 456789999999999999999999888777654
No 474
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.53 E-value=1.1 Score=55.70 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.2
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.++|+++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 57999999999999999999988663
No 475
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.53 E-value=0.17 Score=52.22 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=33.0
Q ss_pred CCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHH
Q 046314 184 SKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
..+++|.+.....++-... +..-+.+.|.+|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHH
Confidence 3578999988888776654 236889999999999999999976
No 476
>PRK15453 phosphoribulokinase; Provisional
Probab=92.52 E-value=0.17 Score=54.87 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=28.3
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.+..+|+|.|.+|.||||+|+++.+.+...-...++++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~ 40 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVE 40 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence 35679999999999999999999976654322344443
No 477
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.50 E-value=0.2 Score=61.47 Aligned_cols=77 Identities=22% Similarity=0.168 Sum_probs=55.8
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc-cCCceEEEeeccchhccCcChHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN-EFEGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
++...++++|.+..++.|...+..+ +.+.++|.+|+||||+|+.+++.+.. .++...|..| .......+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n------p~~~~~~~ 95 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN------PEDPNNPK 95 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC------CCcchHHH
Confidence 4445578999999999888877533 47899999999999999999987643 3577777764 23344555
Q ss_pred HHHHHHHH
Q 046314 259 HKQVVSLL 266 (1137)
Q Consensus 259 ~~~ll~~l 266 (1137)
.+.++...
T Consensus 96 ~~~v~~~~ 103 (637)
T PRK13765 96 IRTVPAGK 103 (637)
T ss_pred HHHHHHhc
Confidence 55555443
No 478
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.49 E-value=0.19 Score=56.22 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=29.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.+++...|.||+||||+|.+.+-........+.-+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 578999999999999999998887776665544443
No 479
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.48 E-value=0.3 Score=55.78 Aligned_cols=104 Identities=19% Similarity=0.358 Sum_probs=58.6
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
..++=+-|||..|.|||.|+-.+|+.+...-...+... .-+..+.+.+-. +. ...+.+..+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~~-~~------~~~~~l~~va~~ 123 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLHQ-LR------GQDDPLPQVADE 123 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHHH-Hh------CCCccHHHHHHH
Confidence 34778999999999999999999997643211111111 011122222211 11 223334555677
Q ss_pred hcCCceEEEEeCC--CCHHH---HHHHhcccCCCCCCCEEEEEeCChh
Q 046314 286 LRRTKVFFVLDDV--SKFEQ---LKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 286 L~~kr~LlVLDdv--~~~~~---l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
+.++..||.||.+ .+..+ +..|...+ +..|. |||+|-+..
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNRP 168 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCCC
Confidence 7788889999985 34333 45555443 23454 566665544
No 480
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.47 E-value=0.89 Score=49.70 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=27.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
....++++|.+|+||||+++.+...+..+=..+.++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i 109 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 109 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 347999999999999999999988765433334444
No 481
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.46 E-value=0.21 Score=53.80 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=32.3
Q ss_pred HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC
Q 046314 196 CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE 237 (1137)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1137)
++...+....++..+|||.|.||+|||||.-++..++..+=.
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 344444444567889999999999999999999887755544
No 482
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.43 E-value=0.11 Score=52.00 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.3
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
+-|.++||.|.||||+.+++++++.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999999876665
No 483
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.41 E-value=0.15 Score=58.08 Aligned_cols=53 Identities=34% Similarity=0.276 Sum_probs=42.2
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEE
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCF 241 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 241 (1137)
..++|.+..+..+...+..+ +.+.+.|.+|+|||+||+.++..+...|-.+.+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~ 76 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRIQC 76 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence 34899988888877766544 468899999999999999999988866654444
No 484
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.39 E-value=0.34 Score=50.92 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=35.6
Q ss_pred cHHHHHhhcCCceEEEEeCC----C--CHHHHHHHhcccCCCCCCCEEEEEeCChhhHHhh
Q 046314 279 PAYTLERLRRTKVFFVLDDV----S--KFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKH 333 (1137)
Q Consensus 279 ~~~l~~~L~~kr~LlVLDdv----~--~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 333 (1137)
.-++.+.|-..+-+|+-|+= + +.+.+-.++..+. ...|..||+.|.|..++..+
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC
Confidence 44557778889999999963 2 2333434433332 13578899999999998754
No 485
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.39 E-value=0.47 Score=59.02 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=36.9
Q ss_pred HHHHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 194 IECIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 194 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
+..|..+|. .+-..-+++-|.|.+|+||||||..++......=..++|+.
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 345556665 34455788999999999999999887776555556677875
No 486
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.39 E-value=2.6 Score=46.39 Aligned_cols=133 Identities=8% Similarity=0.033 Sum_probs=69.4
Q ss_pred HHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-------------CCceEEEeeccchhccCcChHHHHH
Q 046314 194 IECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-------------FEGNCFIENVREEIENGVGLVHLHK 260 (1137)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------F~~~~~~~~~~~~~s~~~~~~~l~~ 260 (1137)
.+++...+..+ .-.....++|+.|+||+++|.+++..+--. .+...++..... ....+++++ +
T Consensus 6 ~~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~--~~~I~idqi-R 81 (290)
T PRK05917 6 WEALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK--GRLHSIETP-R 81 (290)
T ss_pred HHHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC--CCcCcHHHH-H
Confidence 34555555432 225677899999999999999999865221 222222210000 000111111 1
Q ss_pred HHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCCCC
Q 046314 261 QVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGVND 337 (1137)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~ 337 (1137)
++...+. ..-..+++=++|+|+++. .+....|+..+....++..+|++|.+.+ ++.... ..
T Consensus 82 ~l~~~~~---------------~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~-SR 145 (290)
T PRK05917 82 AIKKQIW---------------IHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIR-SR 145 (290)
T ss_pred HHHHHHh---------------hCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHH-hc
Confidence 1111110 001124445788999976 4557777777766667777776666643 433321 11
Q ss_pred ccEEEEccC
Q 046314 338 EYVYEVERL 346 (1137)
Q Consensus 338 ~~~~~v~~L 346 (1137)
...+.+.++
T Consensus 146 cq~~~~~~~ 154 (290)
T PRK05917 146 SLSIHIPME 154 (290)
T ss_pred ceEEEccch
Confidence 226677665
No 487
>PRK13975 thymidylate kinase; Provisional
Probab=92.35 E-value=0.12 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=23.7
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998864
No 488
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.34 E-value=0.11 Score=50.56 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.9
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+|.|-|.+|.||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 688999999999999999998764
No 489
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.28 E-value=0.55 Score=59.38 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=58.5
Q ss_pred CCceEEEEeCCCC---HHHHH----HHhcccCCCCCCCEEEEEeCChhhHHhhCCC-CccEEEEccCCHHHHHHHHHhhc
Q 046314 288 RTKVFFVLDDVSK---FEQLK----YFVGWLHGFCPGSRIVVTTRDKQVLRKHGVN-DEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 288 ~kr~LlVLDdv~~---~~~l~----~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~-~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
..+-|+++|.... +.... .++..+. ..|+.+|+||.+..+....... ....+.+. ++. +.+. -.|-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~--p~Yk 474 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS--PTYK 474 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc--eEEE
Confidence 4788999999843 33322 2333322 3578999999998764432111 10012221 111 1111 1121
Q ss_pred ccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhhccCCHHHHHHHHHHHh
Q 046314 360 FRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSLHQKSKLDWENVLDNLK 410 (1137)
Q Consensus 360 ~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~~~~~~~w~~~l~~l~ 410 (1137)
+....+. ...|-+|++++ |+|-.+..-|..+.+....+...++++|.
T Consensus 475 l~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 475 LLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred ECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2222222 22345556555 88888887777776655556666666554
No 490
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.24 E-value=0.53 Score=53.42 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=24.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh--ccCCceEEE
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS--NEFEGNCFI 242 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~ 242 (1137)
.++|.++|+.|+||||-...++.+.. ..-..+.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiI 239 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAII 239 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEE
Confidence 78999999999999976665655543 344445554
No 491
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.21 E-value=0.13 Score=53.58 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 492
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.19 E-value=0.084 Score=30.87 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=5.6
Q ss_pred CCCEEEccCCCCCcC
Q 046314 858 SLEWLELRGNNFESL 872 (1137)
Q Consensus 858 ~L~~L~Ls~n~l~~l 872 (1137)
+|+.|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 493
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.18 E-value=0.81 Score=58.87 Aligned_cols=226 Identities=16% Similarity=0.172 Sum_probs=106.6
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccC----CceEEEe--eccchhccCcChH-HHHHHHHHHHhCccccCCCCCccHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEF----EGNCFIE--NVREEIENGVGLV-HLHKQVVSLLLGERIEMGGPNIPAY 281 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~--~~~~~~s~~~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~ 281 (1137)
.-+.|+|.+|.||||+...++-....+. +..+++. .... ...+.-. .+..-+...+.... ........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~--~~~~~~q~~~~~~l~~~~~~~~---~~~~~~~~ 297 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFAL--ARKFEKQLSLIDYLAEELFSQG---IAKQLIEA 297 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHH--hhhhHhhccHHHHHHHHHhccC---CcchhhHH
Confidence 4788999999999999998887543222 2223322 1111 0000000 22222222221111 11122222
Q ss_pred HHHhhcCCceEEEEeCCCCHHH------HHHHhcccCCCCCCCEEEEEeCChhhHHhhCCCCccEEEEccCCHHHHHH--
Q 046314 282 TLERLRRTKVFFVLDDVSKFEQ------LKYFVGWLHGFCPGSRIVVTTRDKQVLRKHGVNDEYVYEVERLNEDEGLE-- 353 (1137)
Q Consensus 282 l~~~L~~kr~LlVLDdv~~~~~------l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~-- 353 (1137)
..+.+...++++.+|.++.... +..+-...+ .-+.+++|+|+|....-.....-. .+++..+.++.-.+
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~~~~~~~~f~--~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDTYKEEFKGFA--VFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccchhhhhhhhhh--hccchhhhHHHHHHHH
Confidence 2478899999999999876432 222222222 236889999998765322211111 45555555544332
Q ss_pred ------HHHhhcccCCCCC-hhH-HHH---HHHHHHHhCCCchhHHHHhhhhc------cCCHHHHHHHHHHHhccCCcc
Q 046314 354 ------LFYKYAFRQSHCP-EHL-TAL---SKKAVRYAEGNPLALEVLGSSLH------QKSKLDWENVLDNLKQISGVS 416 (1137)
Q Consensus 354 ------Lf~~~a~~~~~~~-~~~-~~l---~~~iv~~~~G~PLal~~lg~~L~------~~~~~~w~~~l~~l~~~~~~~ 416 (1137)
.+....++..... ..+ ..+ ..+.++.....|++|.+.+..-. ....+-++.+++.+-...+ .
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d-~ 453 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGRED-E 453 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccc-h
Confidence 2222222221111 011 111 12334445788999888874433 1234556666665544332 1
Q ss_pred cHHHHHHHhhccC-ChhhHh-Hhhhcccc
Q 046314 417 RIYNVLRISYEEL-SFEEKS-TFLDIACF 443 (1137)
Q Consensus 417 ~i~~~l~~sy~~L-~~~~k~-~fl~~a~f 443 (1137)
.-.-.....|+.+ .+...+ .+..+|.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~ 482 (824)
T COG5635 454 TRGIKWSKTYAKLTTDQQDKWLLQLLAAL 482 (824)
T ss_pred hhhhcchhhhcccchHHHHHHHHHHHHHH
Confidence 1122233445555 233333 44444444
No 494
>PRK14530 adenylate kinase; Provisional
Probab=92.18 E-value=0.11 Score=55.18 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.2
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.|.|+|++|+||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 495
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.18 E-value=0.3 Score=54.97 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=26.7
Q ss_pred CCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 205 FPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
.....+|+|.|.+|+|||||+..+...+...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3467899999999999999999998877654
No 496
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.15 E-value=0.21 Score=58.09 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.-..++|+|..|.|||||++.+...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999887654
No 497
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.14 E-value=0.11 Score=52.89 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+.|.|+|+.|.||||+|+.++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998763
No 498
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.03 E-value=0.12 Score=53.32 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=29.6
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
.++|.|+|+.|+|||||++.+.......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 46899999999999999999999988888644443
No 499
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=91.98 E-value=0.31 Score=56.37 Aligned_cols=90 Identities=14% Similarity=0.228 Sum_probs=48.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccc-c---CCCCCc-----
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERI-E---MGGPNI----- 278 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~-~---~~~~~~----- 278 (1137)
-..++|.|..|.|||||++.++..... +..++ .-+++ +...+.++.+.++..-..... - ......
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi-~lIGE---R~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVV-GLVGE---RGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEE-EEEcC---ChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 467999999999999999988864332 34444 33433 122233444443322111110 0 011100
Q ss_pred ----cHHHHHhh--cCCceEEEEeCCCCHHH
Q 046314 279 ----PAYTLERL--RRTKVFFVLDDVSKFEQ 303 (1137)
Q Consensus 279 ----~~~l~~~L--~~kr~LlVLDdv~~~~~ 303 (1137)
.-.+.+++ +++++|+++||+....+
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~ 266 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYAQ 266 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHHHH
Confidence 11122333 58999999999966444
No 500
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.97 E-value=0.22 Score=49.29 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=30.5
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
++..+|-+.|.+|.||||||.+++.++..+--.+..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 3467899999999999999999999987776555444
Done!