Query 046314
Match_columns 1137
No_of_seqs 1010 out of 5880
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 18:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 4.2E-50 1.4E-54 397.2 11.8 170 3-177 2-172 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.5E-48 5.1E-53 391.1 12.0 167 6-174 32-200 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 2.3E-39 7.9E-44 393.5 25.6 298 188-502 131-473 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-34 4E-39 390.5 23.1 307 179-500 118-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 9.3E-34 3.2E-38 345.2 20.5 278 185-493 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 1.5E-33 5.1E-38 347.9 22.5 339 179-538 118-508 (591)
7 3rgz_A Protein brassinosteroid 100.0 4.1E-30 1.4E-34 326.4 20.8 336 581-918 284-721 (768)
8 4ecn_A Leucine-rich repeat pro 100.0 2.1E-28 7.1E-33 308.3 31.0 325 582-918 440-822 (876)
9 3t6q_A CD180 antigen; protein- 100.0 2.5E-28 8.4E-33 302.8 30.0 356 534-912 37-460 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-28 4.7E-33 305.1 26.6 208 707-919 306-538 (606)
11 3rgz_A Protein brassinosteroid 100.0 3E-29 1E-33 318.5 20.9 345 545-914 309-740 (768)
12 4eco_A Uncharacterized protein 100.0 1.9E-28 6.6E-33 303.9 27.5 349 547-913 199-599 (636)
13 4ecn_A Leucine-rich repeat pro 100.0 2.8E-28 9.5E-33 307.2 25.8 348 547-913 441-839 (876)
14 4eco_A Uncharacterized protein 100.0 1.4E-28 4.9E-33 305.1 21.5 313 548-893 241-600 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-28 4.7E-33 301.3 19.6 353 534-917 30-488 (549)
16 3t6q_A CD180 antigen; protein- 100.0 3.1E-27 1.1E-31 293.0 29.6 322 585-911 124-533 (606)
17 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-27 6.5E-32 294.8 26.7 228 680-912 302-556 (606)
18 2z7x_B TOLL-like receptor 1, v 100.0 8.2E-28 2.8E-32 292.3 21.6 344 535-911 26-478 (520)
19 3v47_A TOLL-like receptor 5B a 100.0 3.9E-27 1.3E-31 281.3 26.3 336 534-893 34-408 (455)
20 3h16_A TIR protein; bacteria T 99.9 1.2E-29 4E-34 252.0 1.7 118 7-125 18-136 (154)
21 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-26 3.7E-31 298.1 29.3 364 534-911 28-490 (844)
22 2z63_A TOLL-like receptor 4, v 99.9 3.8E-27 1.3E-31 290.0 23.1 363 534-918 32-510 (570)
23 3j0a_A TOLL-like receptor 5; m 99.9 3.4E-27 1.1E-31 302.8 23.5 332 544-890 63-490 (844)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.7E-27 3.3E-31 285.3 26.6 334 534-898 56-490 (562)
25 3v47_A TOLL-like receptor 5B a 99.9 1.7E-26 5.7E-31 275.8 23.8 330 554-910 30-404 (455)
26 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-25 4.9E-30 281.9 33.0 277 639-918 249-576 (680)
27 1o6v_A Internalin A; bacterial 99.9 3.9E-26 1.3E-30 273.1 25.8 322 549-912 63-386 (466)
28 4fmz_A Internalin; leucine ric 99.9 1.1E-25 3.7E-30 258.5 25.3 303 549-891 39-344 (347)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.5E-26 2.9E-30 276.9 26.0 349 534-919 35-490 (562)
30 1ziw_A TOLL-like receptor 3; i 99.9 1E-25 3.6E-30 283.1 27.2 363 534-911 29-464 (680)
31 4fmz_A Internalin; leucine ric 99.9 7.1E-26 2.4E-30 260.0 23.0 296 591-912 44-344 (347)
32 2z81_A CD282 antigen, TOLL-lik 99.9 6.9E-26 2.4E-30 277.3 23.6 338 554-918 26-467 (549)
33 2id5_A Lingo-1, leucine rich r 99.9 2.1E-25 7.3E-30 267.8 26.6 298 579-892 23-332 (477)
34 2z63_A TOLL-like receptor 4, v 99.9 2.5E-25 8.7E-30 273.6 27.8 231 677-912 274-529 (570)
35 3o6n_A APL1; leucine-rich repe 99.9 1.1E-25 3.8E-30 262.8 23.0 305 552-891 43-350 (390)
36 2z7x_B TOLL-like receptor 1, v 99.9 5.2E-26 1.8E-30 276.3 20.6 347 534-919 4-461 (520)
37 1o6v_A Internalin A; bacterial 99.9 3.4E-25 1.2E-29 264.9 24.8 317 552-912 44-364 (466)
38 3oja_B Anopheles plasmodium-re 99.9 1.6E-25 5.6E-30 276.0 22.7 305 552-891 49-356 (597)
39 1jl5_A Outer protein YOPM; leu 99.9 1.3E-24 4.6E-29 257.5 28.3 304 556-906 73-382 (454)
40 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-24 7.1E-29 256.1 29.5 288 549-873 59-355 (457)
41 1jl5_A Outer protein YOPM; leu 99.9 2.4E-24 8.1E-29 255.4 29.5 263 553-873 110-373 (454)
42 2id5_A Lingo-1, leucine rich r 99.9 1.4E-24 5E-29 260.5 25.7 304 593-910 13-329 (477)
43 3o6n_A APL1; leucine-rich repe 99.9 9.4E-25 3.2E-29 254.9 23.4 297 591-910 45-348 (390)
44 3oja_B Anopheles plasmodium-re 99.9 1.3E-24 4.3E-29 268.1 23.0 301 591-912 51-356 (597)
45 3bz5_A Internalin-J, INLJ; leu 99.9 3.7E-23 1.3E-27 245.4 28.6 305 548-891 36-350 (457)
46 4g8a_A TOLL-like receptor 4; l 99.9 2.8E-23 9.5E-28 258.9 25.6 360 534-910 56-576 (635)
47 2ft3_A Biglycan; proteoglycan, 99.9 5.8E-23 2E-27 234.0 23.5 283 555-891 34-331 (332)
48 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-22 3.9E-27 231.6 23.8 237 639-892 55-306 (332)
49 1xku_A Decorin; proteoglycan, 99.9 1.3E-22 4.6E-27 230.9 24.2 201 591-817 52-257 (330)
50 1xku_A Decorin; proteoglycan, 99.9 1.7E-22 5.6E-27 230.1 24.7 285 535-868 36-330 (330)
51 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-23 6.3E-28 235.7 16.4 250 613-897 50-308 (313)
52 3ub2_A TOLL/interleukin-1 rece 99.9 6.1E-25 2.1E-29 214.1 1.7 133 5-142 6-145 (146)
53 3g06_A SSPH2 (leucine-rich rep 99.9 3.7E-22 1.3E-26 243.6 25.8 259 554-871 40-298 (622)
54 4g8a_A TOLL-like receptor 4; l 99.9 7.5E-22 2.6E-26 245.9 25.3 334 534-891 80-578 (635)
55 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-21 7.8E-26 236.6 27.3 254 592-891 41-295 (622)
56 4fcg_A Uncharacterized protein 99.9 5.8E-22 2E-26 224.8 17.3 132 730-873 184-317 (328)
57 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-21 3.6E-26 221.3 15.0 245 639-916 51-306 (313)
58 3o53_A Protein LRIM1, AGAP0063 99.9 4.6E-22 1.6E-26 224.8 11.9 259 614-893 11-275 (317)
59 2z66_A Variable lymphocyte rec 99.9 3.5E-21 1.2E-25 216.6 16.8 130 732-871 129-262 (306)
60 4fcg_A Uncharacterized protein 99.9 6.1E-21 2.1E-25 216.4 17.6 222 553-813 80-314 (328)
61 2z66_A Variable lymphocyte rec 99.8 6.5E-21 2.2E-25 214.4 16.1 135 747-891 121-259 (306)
62 2z80_A TOLL-like receptor 2, v 99.8 3.3E-21 1.1E-25 221.5 13.9 267 593-891 33-312 (353)
63 3zyi_A Leucine-rich repeat-con 99.8 3.2E-20 1.1E-24 220.8 22.8 244 593-871 56-304 (452)
64 3zyj_A Leucine-rich repeat-con 99.8 3E-20 1E-24 220.2 22.1 112 748-871 181-293 (440)
65 3zyi_A Leucine-rich repeat-con 99.8 1.3E-19 4.5E-24 215.5 23.8 241 614-891 55-301 (452)
66 1ozn_A Reticulon 4 receptor; N 99.8 4.5E-20 1.5E-24 205.2 18.2 222 594-871 14-239 (285)
67 3oja_A Leucine-rich immune mol 99.8 9.4E-21 3.2E-25 226.7 12.4 233 639-891 35-273 (487)
68 3zyj_A Leucine-rich repeat-con 99.8 1.9E-19 6.5E-24 213.3 23.3 220 639-891 65-290 (440)
69 3o53_A Protein LRIM1, AGAP0063 99.8 9.1E-21 3.1E-25 214.2 11.2 261 639-917 11-278 (317)
70 1ozn_A Reticulon 4 receptor; N 99.8 3.7E-20 1.3E-24 205.9 15.9 210 579-812 23-237 (285)
71 2z80_A TOLL-like receptor 2, v 99.8 3.5E-20 1.2E-24 213.0 15.7 257 579-871 43-315 (353)
72 1z7x_W Ribonuclease inhibitor; 99.8 9.8E-23 3.4E-27 243.5 -5.9 315 592-912 29-409 (461)
73 1wwl_A Monocyte differentiatio 99.8 2.5E-21 8.4E-26 218.3 5.6 150 730-891 150-307 (312)
74 2js7_A Myeloid differentiation 99.8 4E-21 1.4E-25 190.5 3.9 100 6-107 13-117 (160)
75 3oja_A Leucine-rich immune mol 99.8 5.5E-20 1.9E-24 220.0 14.3 218 658-893 31-250 (487)
76 1fyx_A TOLL-like receptor 2; b 99.8 2.6E-21 8.8E-26 190.0 2.0 103 6-110 2-110 (149)
77 2j67_A TOLL like receptor 10; 99.8 9E-21 3.1E-25 190.8 4.6 98 6-105 32-134 (178)
78 1t3g_A X-linked interleukin-1 99.8 1.6E-20 5.5E-25 185.9 6.1 101 8-108 1-115 (159)
79 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-21 3.7E-26 234.5 -7.2 343 550-911 24-437 (461)
80 1wwl_A Monocyte differentiatio 99.8 5.4E-20 1.9E-24 207.3 6.8 169 731-910 123-305 (312)
81 1p9a_G Platelet glycoprotein I 99.8 4.7E-18 1.6E-22 188.9 20.5 199 639-871 11-209 (290)
82 2z62_A TOLL-like receptor 4, v 99.8 3.9E-18 1.3E-22 188.6 17.7 217 597-870 13-237 (276)
83 2o6q_A Variable lymphocyte rec 99.8 2E-17 6.9E-22 182.1 21.2 199 639-870 17-218 (270)
84 2o6q_A Variable lymphocyte rec 99.8 2.1E-17 7.3E-22 181.9 20.0 202 592-848 17-219 (270)
85 2z62_A TOLL-like receptor 4, v 99.8 9.5E-18 3.2E-22 185.4 17.3 153 730-891 77-235 (276)
86 1h6u_A Internalin H; cell adhe 99.7 9.5E-18 3.3E-22 188.3 14.9 216 612-873 18-233 (308)
87 2xwt_C Thyrotropin receptor; s 99.7 1E-17 3.6E-22 180.8 14.4 130 748-892 101-238 (239)
88 3rfs_A Internalin B, repeat mo 99.7 2.5E-17 8.4E-22 181.6 16.3 222 612-899 18-241 (272)
89 1p9a_G Platelet glycoprotein I 99.7 7.5E-17 2.6E-21 179.2 19.1 149 730-891 56-206 (290)
90 4glp_A Monocyte differentiatio 99.7 2.5E-17 8.7E-22 185.3 15.2 222 614-891 65-305 (310)
91 4ay9_X Follicle-stimulating ho 99.7 5.2E-17 1.8E-21 186.0 16.2 236 594-867 12-256 (350)
92 4glp_A Monocyte differentiatio 99.7 1.3E-17 4.4E-22 187.7 10.8 153 748-911 141-304 (310)
93 3ogk_B Coronatine-insensitive 99.7 1.7E-19 5.7E-24 222.8 -5.5 345 552-912 110-524 (592)
94 2xwt_C Thyrotropin receptor; s 99.7 6.6E-17 2.2E-21 174.5 14.8 167 734-914 60-239 (239)
95 3rfs_A Internalin B, repeat mo 99.7 5E-17 1.7E-21 179.1 14.1 101 592-695 42-143 (272)
96 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.9E-21 179.5 16.2 194 592-852 42-235 (308)
97 3ogk_B Coronatine-insensitive 99.7 1.7E-18 5.8E-23 213.7 -1.0 342 548-912 67-474 (592)
98 2qen_A Walker-type ATPase; unk 99.7 7.3E-16 2.5E-20 176.6 21.1 293 179-494 6-349 (350)
99 2ast_B S-phase kinase-associat 99.7 1.9E-17 6.3E-22 188.8 5.6 226 639-897 71-310 (336)
100 2ca6_A RAN GTPase-activating p 99.7 1.4E-17 4.8E-22 193.7 2.7 263 592-872 10-318 (386)
101 2ast_B S-phase kinase-associat 99.7 6.7E-18 2.3E-22 192.5 -0.3 226 592-872 71-308 (336)
102 3m19_A Variable lymphocyte rec 99.7 1.4E-15 4.7E-20 165.4 17.7 152 729-891 35-190 (251)
103 2fna_A Conserved hypothetical 99.6 2.4E-15 8.3E-20 172.7 19.9 294 179-493 7-356 (357)
104 2p1m_B Transport inhibitor res 99.6 5.2E-18 1.8E-22 209.4 -2.6 369 548-941 60-518 (594)
105 3m19_A Variable lymphocyte rec 99.6 2.8E-15 9.5E-20 163.0 18.9 115 748-872 79-194 (251)
106 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 170.7 18.9 161 736-909 87-254 (350)
107 3goz_A Leucine-rich repeat-con 99.6 4.6E-17 1.6E-21 187.4 3.0 254 595-871 2-298 (362)
108 2p1m_B Transport inhibitor res 99.6 6.1E-18 2.1E-22 208.9 -6.2 198 707-913 288-518 (594)
109 2ca6_A RAN GTPase-activating p 99.6 2.8E-17 9.7E-22 191.1 -0.3 243 580-850 22-319 (386)
110 1h6t_A Internalin B; cell adhe 99.6 1.4E-15 4.8E-20 169.1 13.2 78 611-694 22-99 (291)
111 1m9s_A Internalin B; cell inva 99.6 1.3E-15 4.5E-20 185.6 11.3 195 611-873 19-213 (605)
112 3cvr_A Invasion plasmid antige 99.6 1.1E-14 3.8E-19 175.4 18.1 185 638-871 59-244 (571)
113 3cvr_A Invasion plasmid antige 99.6 5.2E-15 1.8E-19 178.2 15.2 187 555-775 60-253 (571)
114 1h6t_A Internalin B; cell adhe 99.6 1.1E-14 3.6E-19 162.0 14.2 141 732-891 71-211 (291)
115 3e6j_A Variable lymphocyte rec 99.6 1.8E-14 6E-19 154.1 14.8 148 731-891 21-170 (229)
116 1m9s_A Internalin B; cell inva 99.6 7.5E-15 2.6E-19 178.9 13.3 145 730-893 66-210 (605)
117 2v9t_B SLIT homolog 2 protein 99.6 2.5E-14 8.7E-19 151.8 15.1 147 732-891 14-163 (220)
118 3goz_A Leucine-rich repeat-con 99.6 4.2E-16 1.4E-20 179.4 1.4 248 617-891 2-295 (362)
119 2o6s_A Variable lymphocyte rec 99.6 4.5E-14 1.5E-18 148.6 16.6 155 728-898 27-183 (208)
120 4ezg_A Putative uncharacterize 99.5 1.3E-14 4.6E-19 151.2 11.9 111 748-871 84-195 (197)
121 1w5s_A Origin recognition comp 99.5 3E-14 1E-18 167.2 15.9 281 182-479 19-371 (412)
122 1dce_A Protein (RAB geranylger 99.5 5.2E-17 1.8E-21 196.9 -8.2 200 611-873 347-549 (567)
123 4ezg_A Putative uncharacterize 99.5 3.3E-14 1.1E-18 148.2 12.8 147 729-891 44-192 (197)
124 2xot_A Amphoterin-induced prot 99.5 3.3E-14 1.1E-18 163.3 13.8 160 721-891 30-200 (361)
125 2v9t_B SLIT homolog 2 protein 99.5 1.4E-13 4.8E-18 146.1 15.3 141 721-871 23-166 (220)
126 2v70_A SLIT-2, SLIT homolog 2 99.5 1.4E-13 4.8E-18 146.0 15.1 148 712-870 15-166 (220)
127 2v70_A SLIT-2, SLIT homolog 2 99.5 2.4E-13 8.4E-18 144.2 15.5 149 731-892 13-165 (220)
128 2o6s_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 142.0 16.3 163 732-911 10-175 (208)
129 3e6j_A Variable lymphocyte rec 99.5 6.8E-13 2.3E-17 141.8 16.2 149 711-871 22-173 (229)
130 2qby_B CDC6 homolog 3, cell di 99.5 7E-12 2.4E-16 145.4 26.1 274 184-479 19-339 (384)
131 1xeu_A Internalin C; cellular 99.4 3.9E-13 1.3E-17 146.8 14.0 142 730-891 42-183 (263)
132 2xot_A Amphoterin-induced prot 99.4 2.8E-13 9.4E-18 155.6 13.3 131 734-871 69-203 (361)
133 1xeu_A Internalin C; cellular 99.4 1.5E-13 5.1E-18 150.2 9.8 125 730-873 64-188 (263)
134 1dce_A Protein (RAB geranylger 99.4 2.7E-15 9.2E-20 181.9 -6.3 209 591-864 349-567 (567)
135 2ell_A Acidic leucine-rich nuc 99.4 3.3E-13 1.1E-17 136.7 9.0 134 729-873 24-163 (168)
136 2v1u_A Cell division control p 99.4 5.7E-12 2E-16 146.2 20.5 280 183-479 17-351 (387)
137 2qby_A CDC6 homolog 1, cell di 99.4 5.5E-12 1.9E-16 146.3 16.6 281 182-479 17-348 (386)
138 1w8a_A SLIT protein; signaling 99.3 4.3E-12 1.5E-16 131.4 12.7 128 732-871 11-140 (192)
139 4b8c_D Glucose-repressible alc 99.3 4.3E-13 1.5E-17 167.7 5.3 162 734-911 206-369 (727)
140 4b8c_D Glucose-repressible alc 99.3 3.6E-13 1.2E-17 168.4 4.4 133 639-793 225-358 (727)
141 2ell_A Acidic leucine-rich nuc 99.3 4.5E-12 1.5E-16 128.2 11.2 129 749-891 21-158 (168)
142 1fnn_A CDC6P, cell division co 99.3 4.9E-11 1.7E-15 138.4 21.5 302 183-500 15-387 (389)
143 2wfh_A SLIT homolog 2 protein 99.3 9.6E-12 3.3E-16 128.8 12.8 127 732-871 13-140 (193)
144 2je0_A Acidic leucine-rich nuc 99.3 3.5E-12 1.2E-16 126.1 8.4 123 752-888 17-148 (149)
145 2je0_A Acidic leucine-rich nuc 99.3 2.7E-12 9.1E-17 127.0 7.2 128 728-866 16-149 (149)
146 2o6r_A Variable lymphocyte rec 99.3 2.4E-11 8.3E-16 124.0 13.6 129 731-871 9-138 (177)
147 1njg_A DNA polymerase III subu 99.3 3.9E-11 1.3E-15 129.3 15.1 201 181-394 19-231 (250)
148 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 4E-16 126.2 8.1 129 748-891 15-151 (176)
149 3sb4_A Hypothetical leucine ri 99.2 2.6E-11 8.9E-16 137.2 10.5 259 591-886 49-327 (329)
150 2wfh_A SLIT homolog 2 protein 99.2 6.9E-11 2.4E-15 122.3 12.7 117 721-847 22-139 (193)
151 1w8a_A SLIT protein; signaling 99.2 7.9E-11 2.7E-15 121.9 12.6 117 722-848 21-140 (192)
152 1a9n_A U2A', U2A'; complex (nu 99.2 1.9E-11 6.4E-16 124.7 7.7 130 730-871 20-154 (176)
153 3sb4_A Hypothetical leucine ri 99.2 4.6E-11 1.6E-15 135.2 10.0 260 553-864 48-328 (329)
154 2chg_A Replication factor C sm 99.1 4.9E-10 1.7E-14 118.7 15.2 189 180-391 12-204 (226)
155 4fdw_A Leucine rich hypothetic 99.1 2.4E-09 8.1E-14 123.9 20.4 250 579-888 124-378 (401)
156 4fdw_A Leucine rich hypothetic 99.1 4E-09 1.4E-13 122.0 21.8 237 592-891 114-356 (401)
157 2o6r_A Variable lymphocyte rec 99.1 6.4E-10 2.2E-14 113.4 13.2 111 729-849 28-139 (177)
158 1ds9_A Outer arm dynein; leuci 99.1 1.9E-12 6.5E-17 134.9 -7.0 118 740-872 36-155 (198)
159 1sxj_B Activator 1 37 kDa subu 99.0 2.3E-09 7.8E-14 120.8 15.8 189 181-392 17-211 (323)
160 4fs7_A Uncharacterized protein 99.0 2.1E-08 7.1E-13 116.3 23.2 132 542-694 59-194 (394)
161 2r9u_A Variable lymphocyte rec 99.0 1.3E-09 4.5E-14 110.5 11.0 106 732-873 15-121 (174)
162 3g39_A Variable lymphocyte rec 99.0 1.5E-09 5.1E-14 109.7 11.1 106 731-872 11-117 (170)
163 2r9u_A Variable lymphocyte rec 99.0 2.1E-09 7.2E-14 109.0 11.2 99 779-891 15-116 (174)
164 1ds9_A Outer arm dynein; leuci 98.9 1.4E-11 4.9E-16 128.2 -7.0 133 748-895 14-155 (198)
165 3g39_A Variable lymphocyte rec 98.9 3.8E-09 1.3E-13 106.7 11.0 100 778-891 11-113 (170)
166 1hqc_A RUVB; extended AAA-ATPa 98.9 5.3E-08 1.8E-12 109.6 19.1 268 180-491 7-310 (324)
167 1iqp_A RFCS; clamp loader, ext 98.9 9E-09 3.1E-13 116.1 12.4 189 180-391 20-212 (327)
168 2ifg_A High affinity nerve gro 98.7 4.2E-08 1.4E-12 111.7 10.2 84 733-817 12-97 (347)
169 2ifg_A High affinity nerve gro 98.7 4.4E-08 1.5E-12 111.5 10.0 106 756-872 12-118 (347)
170 1jr3_A DNA polymerase III subu 98.6 1.6E-07 5.4E-12 108.0 14.5 197 181-391 12-221 (373)
171 2chq_A Replication factor C sm 98.6 1.6E-07 5.6E-12 105.3 13.6 187 180-390 12-203 (319)
172 4fs7_A Uncharacterized protein 98.6 1.5E-06 5.1E-11 100.6 21.1 301 544-917 84-393 (394)
173 3pfi_A Holliday junction ATP-d 98.6 1.5E-06 5.3E-11 98.2 20.5 265 180-492 24-327 (338)
174 3un9_A NLR family member X1; l 98.5 8.9E-09 3E-13 117.9 0.0 40 832-871 209-253 (372)
175 3un9_A NLR family member X1; l 98.5 5.8E-09 2E-13 119.4 -1.9 155 729-891 72-250 (372)
176 1jbk_A CLPB protein; beta barr 98.5 6.1E-07 2.1E-11 92.1 11.6 51 182-234 19-69 (195)
177 3bos_A Putative DNA replicatio 98.4 3.6E-07 1.2E-11 97.8 9.6 175 182-391 25-217 (242)
178 3d8b_A Fidgetin-like protein 1 98.4 2.8E-06 9.4E-11 96.6 17.2 202 159-392 63-296 (357)
179 1sxj_D Activator 1 41 kDa subu 98.4 1E-06 3.6E-11 100.2 13.6 198 180-390 32-234 (353)
180 3h4m_A Proteasome-activating n 98.4 8.2E-07 2.8E-11 97.8 12.0 182 180-389 12-229 (285)
181 1sxj_A Activator 1 95 kDa subu 98.4 2.4E-06 8.2E-11 102.2 16.9 194 180-390 34-252 (516)
182 3te6_A Regulatory protein SIR3 98.4 2.3E-06 7.7E-11 94.2 14.4 162 186-359 21-211 (318)
183 2ra8_A Uncharacterized protein 98.4 1.6E-07 5.5E-12 106.5 4.5 34 751-784 192-227 (362)
184 4gt6_A Cell surface protein; l 98.4 2.5E-05 8.4E-10 90.3 22.9 288 543-868 52-368 (394)
185 1d2n_A N-ethylmaleimide-sensit 98.4 7.9E-06 2.7E-10 89.1 17.7 201 184-412 32-264 (272)
186 4h09_A Hypothetical leucine ri 98.3 3.2E-05 1.1E-09 88.9 23.4 125 748-887 213-340 (379)
187 3b9p_A CG5977-PA, isoform A; A 98.3 1.4E-05 4.9E-10 88.4 18.0 196 166-391 3-233 (297)
188 2z4s_A Chromosomal replication 98.3 4.4E-06 1.5E-10 97.5 13.8 182 183-388 103-303 (440)
189 1sxj_E Activator 1 40 kDa subu 98.3 4.7E-06 1.6E-10 94.8 13.5 201 180-389 9-235 (354)
190 3uk6_A RUVB-like 2; hexameric 98.3 1.3E-05 4.6E-10 91.6 17.3 201 184-390 43-302 (368)
191 2qz4_A Paraplegin; AAA+, SPG7, 98.3 9E-06 3.1E-10 88.1 15.0 183 183-390 4-221 (262)
192 3eie_A Vacuolar protein sortin 98.2 3.5E-05 1.2E-09 86.2 19.7 184 180-390 13-227 (322)
193 2qp9_X Vacuolar protein sortin 98.2 1.7E-05 5.8E-10 89.9 17.0 182 181-391 47-261 (355)
194 3syl_A Protein CBBX; photosynt 98.2 1.8E-05 6.1E-10 88.1 16.4 150 186-361 32-219 (309)
195 4h09_A Hypothetical leucine ri 98.2 0.00011 3.6E-09 84.4 23.1 283 544-872 59-347 (379)
196 3pvs_A Replication-associated 98.2 1.6E-05 5.6E-10 92.5 16.0 180 180-389 21-213 (447)
197 1l8q_A Chromosomal replication 98.2 2.3E-05 7.8E-10 87.9 16.4 178 183-386 9-203 (324)
198 2ra8_A Uncharacterized protein 98.2 8.3E-07 2.8E-11 100.6 4.1 140 744-890 164-317 (362)
199 2zan_A Vacuolar protein sortin 98.1 3.2E-05 1.1E-09 90.4 16.9 185 180-390 129-344 (444)
200 1xwi_A SKD1 protein; VPS4B, AA 98.1 3.1E-05 1.1E-09 86.4 15.7 182 181-391 8-223 (322)
201 4gt6_A Cell surface protein; l 98.1 0.00012 4.1E-09 84.4 21.3 117 592-715 65-189 (394)
202 3u61_B DNA polymerase accessor 98.1 6.6E-06 2.2E-10 92.3 10.3 176 180-386 21-211 (324)
203 2p65_A Hypothetical protein PF 98.1 1.3E-05 4.3E-10 81.6 11.5 50 183-234 20-69 (187)
204 3vfd_A Spastin; ATPase, microt 98.0 5.5E-05 1.9E-09 87.0 16.4 185 180-391 110-326 (389)
205 3cf0_A Transitional endoplasmi 98.0 4.5E-05 1.5E-09 84.3 13.4 155 182-360 12-200 (301)
206 1in4_A RUVB, holliday junction 97.9 0.00041 1.4E-08 77.8 21.0 267 181-492 21-324 (334)
207 1a5t_A Delta prime, HOLB; zinc 97.9 5.8E-05 2E-09 84.8 14.0 174 191-391 8-205 (334)
208 1sxj_C Activator 1 40 kDa subu 97.9 9.4E-05 3.2E-09 83.4 14.1 183 181-386 21-207 (340)
209 3n70_A Transport activator; si 97.8 2.8E-05 9.6E-10 75.7 7.3 47 186-232 2-48 (145)
210 4b4t_J 26S protease regulatory 97.7 0.00045 1.5E-08 77.9 16.8 172 184-384 147-354 (405)
211 1qvr_A CLPB protein; coiled co 97.7 6.2E-05 2.1E-09 95.7 10.7 52 181-234 166-217 (854)
212 4fcw_A Chaperone protein CLPB; 97.7 0.0002 6.7E-09 79.6 12.9 51 185-235 17-74 (311)
213 3pxg_A Negative regulator of g 97.7 0.00041 1.4E-08 81.6 15.9 153 181-359 176-338 (468)
214 1lv7_A FTSH; alpha/beta domain 97.6 0.00025 8.5E-09 76.4 12.4 153 181-359 8-195 (257)
215 1io0_A Tropomodulin; LRR prote 97.6 1.7E-05 5.9E-10 80.8 2.7 117 747-870 31-164 (185)
216 3ec2_A DNA replication protein 97.6 0.00012 4.1E-09 74.1 8.9 50 184-233 9-63 (180)
217 4b4t_H 26S protease regulatory 97.6 0.00098 3.4E-08 76.1 16.9 171 184-383 208-414 (467)
218 3hu3_A Transitional endoplasmi 97.6 0.00038 1.3E-08 81.8 13.7 154 184-361 203-387 (489)
219 4b4t_L 26S protease subunit RP 97.6 0.00077 2.6E-08 77.2 15.8 171 184-383 180-386 (437)
220 1ofh_A ATP-dependent HSL prote 97.5 0.00038 1.3E-08 77.1 12.4 50 185-234 15-76 (310)
221 2bjv_A PSP operon transcriptio 97.5 0.00022 7.5E-09 77.2 9.8 50 184-233 5-54 (265)
222 2w58_A DNAI, primosome compone 97.5 9.3E-05 3.2E-09 76.5 6.2 61 183-243 23-89 (202)
223 2ce7_A Cell division protein F 97.5 0.001 3.4E-08 77.5 15.6 175 183-384 14-221 (476)
224 4b4t_M 26S protease regulatory 97.5 0.00076 2.6E-08 77.2 14.1 172 183-383 179-386 (434)
225 2r62_A Cell division protease 97.5 6.8E-05 2.3E-09 81.4 4.6 155 181-359 7-196 (268)
226 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00084 2.9E-08 84.4 14.6 156 182-359 183-362 (758)
227 4b4t_K 26S protease regulatory 97.4 0.0016 5.6E-08 74.4 15.6 171 184-383 171-378 (428)
228 1ojl_A Transcriptional regulat 97.4 0.00041 1.4E-08 76.6 10.2 48 185-232 2-49 (304)
229 2gno_A DNA polymerase III, gam 97.4 0.00054 1.9E-08 75.4 10.8 145 189-359 1-152 (305)
230 4b4t_I 26S protease regulatory 97.3 0.0014 4.8E-08 74.1 13.4 171 184-383 181-387 (437)
231 3co5_A Putative two-component 97.3 7E-05 2.4E-09 72.7 2.5 49 185-233 4-52 (143)
232 3e4g_A ATP synthase subunit S, 97.3 0.00012 3.9E-09 72.9 4.0 38 661-698 61-98 (176)
233 3pxi_A Negative regulator of g 97.3 0.0016 5.3E-08 81.8 15.2 151 182-359 177-338 (758)
234 1io0_A Tropomodulin; LRR prote 97.3 0.0001 3.5E-09 75.0 3.5 111 730-847 37-164 (185)
235 2c9o_A RUVB-like 1; hexameric 97.3 0.0013 4.5E-08 77.0 13.1 51 183-233 35-88 (456)
236 3rw6_A Nuclear RNA export fact 97.2 3.2E-05 1.1E-09 83.0 -1.2 37 833-870 195-233 (267)
237 3e4g_A ATP synthase subunit S, 97.2 0.00016 5.4E-09 71.9 3.7 33 835-867 115-149 (176)
238 3t15_A Ribulose bisphosphate c 97.2 0.002 6.9E-08 70.6 12.3 29 207-235 35-63 (293)
239 2kjq_A DNAA-related protein; s 97.1 0.00085 2.9E-08 65.3 8.1 36 208-243 36-71 (149)
240 2r44_A Uncharacterized protein 97.0 0.002 7E-08 72.1 11.1 47 185-235 27-73 (331)
241 1iy2_A ATP-dependent metallopr 97.0 0.0019 6.5E-08 70.3 10.1 154 182-359 37-223 (278)
242 3cf2_A TER ATPase, transitiona 97.0 0.0011 3.7E-08 81.8 8.7 171 185-384 204-407 (806)
243 3m6a_A ATP-dependent protease 97.0 0.0042 1.4E-07 74.3 13.7 51 186-236 82-136 (543)
244 1ixz_A ATP-dependent metallopr 97.0 0.002 6.9E-08 69.0 10.0 52 182-233 13-74 (254)
245 3pxi_A Negative regulator of g 96.9 0.0016 5.5E-08 81.7 9.7 150 185-359 491-675 (758)
246 2x8a_A Nuclear valosin-contain 96.9 0.013 4.5E-07 63.3 15.3 151 185-359 10-191 (274)
247 3rw6_A Nuclear RNA export fact 96.8 0.00065 2.2E-08 72.8 4.4 58 730-789 171-233 (267)
248 1eiw_A Hypothetical protein MT 96.8 0.0015 5.1E-08 59.1 5.7 71 8-101 3-73 (111)
249 2dhr_A FTSH; AAA+ protein, hex 96.7 0.014 4.9E-07 68.2 14.5 155 182-360 28-215 (499)
250 1ypw_A Transitional endoplasmi 96.4 0.0031 1.1E-07 79.0 7.3 52 184-235 203-265 (806)
251 1qvr_A CLPB protein; coiled co 96.4 0.007 2.4E-07 76.8 10.5 50 185-234 558-614 (854)
252 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0065 2.2E-07 76.2 10.0 49 185-233 458-513 (758)
253 1um8_A ATP-dependent CLP prote 96.4 0.019 6.6E-07 65.3 13.1 26 208-233 72-97 (376)
254 2qgz_A Helicase loader, putati 96.3 0.014 4.8E-07 64.2 10.5 60 184-243 123-188 (308)
255 1ye8_A Protein THEP1, hypothet 96.1 0.067 2.3E-06 53.4 13.7 24 210-233 2-25 (178)
256 2cvh_A DNA repair and recombin 96.0 0.0085 2.9E-07 62.3 7.0 34 207-243 19-52 (220)
257 3dm5_A SRP54, signal recogniti 95.8 0.19 6.4E-06 57.5 17.2 35 207-241 99-133 (443)
258 1zu4_A FTSY; GTPase, signal re 95.7 0.036 1.2E-06 61.1 10.4 37 206-242 103-139 (320)
259 3jvv_A Twitching mobility prot 95.6 0.006 2.1E-07 68.4 3.9 110 209-330 124-234 (356)
260 2eyu_A Twitching motility prot 95.6 0.005 1.7E-07 66.0 3.0 111 207-329 24-135 (261)
261 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.0045 1.5E-07 67.3 2.5 24 208-231 123-146 (331)
262 1j8m_F SRP54, signal recogniti 95.5 0.044 1.5E-06 59.8 10.0 35 208-242 98-132 (297)
263 1g5t_A COB(I)alamin adenosyltr 95.4 0.0082 2.8E-07 60.4 3.7 119 208-328 28-164 (196)
264 3cf2_A TER ATPase, transitiona 95.3 0.023 7.7E-07 70.1 7.8 153 184-361 476-663 (806)
265 1jr3_D DNA polymerase III, del 95.3 0.21 7.3E-06 55.7 15.3 156 207-389 17-183 (343)
266 1vma_A Cell division protein F 95.3 0.15 5.3E-06 55.5 13.6 45 191-235 81-131 (306)
267 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.016 5.4E-07 60.8 5.2 36 208-243 23-58 (235)
268 3kl4_A SRP54, signal recogniti 94.9 0.34 1.2E-05 55.3 15.7 36 207-242 96-131 (433)
269 3e70_C DPA, signal recognition 94.8 0.15 5.1E-06 56.3 12.0 29 207-235 128-156 (328)
270 3c8u_A Fructokinase; YP_612366 94.7 0.031 1.1E-06 57.6 5.9 28 206-233 20-47 (208)
271 2b8t_A Thymidine kinase; deoxy 94.7 0.012 4.3E-07 60.9 2.8 109 208-327 12-126 (223)
272 1rz3_A Hypothetical protein rb 94.7 0.046 1.6E-06 55.9 7.1 44 190-233 3-47 (201)
273 3hr8_A Protein RECA; alpha and 94.7 0.093 3.2E-06 58.4 9.9 50 194-243 46-96 (356)
274 3hws_A ATP-dependent CLP prote 94.7 0.022 7.4E-07 64.5 4.9 47 187-233 17-76 (363)
275 1qhx_A CPT, protein (chloramph 94.6 0.014 4.9E-07 58.3 3.0 25 209-233 4-28 (178)
276 3hyn_A Putative signal transdu 94.5 0.15 5.1E-06 49.5 9.3 112 9-125 5-140 (189)
277 3rfe_A Platelet glycoprotein I 94.4 0.047 1.6E-06 51.4 5.6 54 804-870 12-68 (130)
278 2xxa_A Signal recognition part 94.4 0.12 4.2E-06 59.3 10.2 29 207-235 99-127 (433)
279 2ewv_A Twitching motility prot 94.3 0.024 8.2E-07 64.1 4.2 110 207-328 135-245 (372)
280 3kb2_A SPBC2 prophage-derived 94.2 0.024 8.3E-07 56.2 3.5 25 209-233 2-26 (173)
281 2orw_A Thymidine kinase; TMTK, 94.2 0.015 5.3E-07 58.5 2.0 25 209-233 4-28 (184)
282 1odf_A YGR205W, hypothetical 3 94.2 0.05 1.7E-06 59.1 6.2 30 205-234 28-57 (290)
283 2ga8_A Hypothetical 39.9 kDa p 94.2 0.04 1.4E-06 60.9 5.3 49 188-236 2-52 (359)
284 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.036 1.2E-06 64.9 5.3 45 185-233 22-66 (500)
285 3sr0_A Adenylate kinase; phosp 94.1 0.039 1.3E-06 56.6 4.8 89 210-308 2-94 (206)
286 3rfe_A Platelet glycoprotein I 94.0 0.053 1.8E-06 51.1 5.3 52 837-891 11-66 (130)
287 3vaa_A Shikimate kinase, SK; s 94.0 0.026 8.8E-07 57.7 3.3 26 208-233 25-50 (199)
288 3trf_A Shikimate kinase, SK; a 94.0 0.025 8.7E-07 56.9 3.3 26 208-233 5-30 (185)
289 1v5w_A DMC1, meiotic recombina 94.0 0.17 5.9E-06 56.4 10.2 47 197-243 111-163 (343)
290 1pgv_A TMD-1, tropomodulin TMD 93.9 0.027 9.2E-07 56.9 3.0 65 749-813 38-111 (197)
291 2yhs_A FTSY, cell division pro 93.9 0.13 4.3E-06 59.5 8.9 36 207-243 292-327 (503)
292 3tqc_A Pantothenate kinase; bi 93.8 0.069 2.4E-06 58.6 6.4 47 187-233 69-117 (321)
293 3tlx_A Adenylate kinase 2; str 93.8 0.053 1.8E-06 57.4 5.3 41 192-232 13-53 (243)
294 3lw7_A Adenylate kinase relate 93.8 0.029 1E-06 55.7 3.1 22 209-231 2-23 (179)
295 3io5_A Recombination and repai 93.7 0.13 4.4E-06 55.7 8.1 34 210-243 30-65 (333)
296 3bh0_A DNAB-like replicative h 93.7 0.11 3.7E-06 57.3 7.8 65 194-266 55-119 (315)
297 1zuh_A Shikimate kinase; alpha 93.7 0.034 1.2E-06 55.0 3.3 26 208-233 7-32 (168)
298 1ly1_A Polynucleotide kinase; 93.6 0.037 1.3E-06 55.3 3.6 22 209-230 3-24 (181)
299 1nks_A Adenylate kinase; therm 93.6 0.057 1.9E-06 54.5 5.0 26 209-234 2-27 (194)
300 3b9q_A Chloroplast SRP recepto 93.5 0.15 5E-06 55.7 8.4 35 207-242 99-133 (302)
301 3uie_A Adenylyl-sulfate kinase 93.5 0.066 2.2E-06 54.7 5.3 27 207-233 24-50 (200)
302 1g8p_A Magnesium-chelatase 38 93.5 0.037 1.3E-06 62.1 3.7 51 181-233 20-70 (350)
303 2rhm_A Putative kinase; P-loop 93.4 0.051 1.8E-06 54.9 4.3 26 207-232 4-29 (193)
304 1sky_E F1-ATPase, F1-ATP synth 93.3 0.068 2.3E-06 61.3 5.4 37 210-246 153-189 (473)
305 2yvu_A Probable adenylyl-sulfa 93.3 0.07 2.4E-06 53.7 5.1 28 207-234 12-39 (186)
306 2zr9_A Protein RECA, recombina 93.3 0.27 9.1E-06 54.9 10.2 50 194-243 46-96 (349)
307 2og2_A Putative signal recogni 93.3 0.45 1.5E-05 53.0 11.9 35 207-242 156-190 (359)
308 1u94_A RECA protein, recombina 93.3 0.12 4.3E-06 57.6 7.5 50 194-243 48-98 (356)
309 1kag_A SKI, shikimate kinase I 93.2 0.036 1.2E-06 55.1 2.7 25 209-233 5-29 (173)
310 1kgd_A CASK, peripheral plasma 93.2 0.036 1.2E-06 55.6 2.7 26 208-233 5-30 (180)
311 2ze6_A Isopentenyl transferase 93.2 0.049 1.7E-06 58.0 3.8 25 209-233 2-26 (253)
312 1zp6_A Hypothetical protein AT 93.2 0.044 1.5E-06 55.4 3.3 24 208-231 9-32 (191)
313 1ex7_A Guanylate kinase; subst 93.1 0.031 1.1E-06 56.1 2.1 29 209-237 2-30 (186)
314 3iij_A Coilin-interacting nucl 93.1 0.035 1.2E-06 55.6 2.4 25 208-232 11-35 (180)
315 1xjc_A MOBB protein homolog; s 93.1 0.071 2.4E-06 52.5 4.5 34 207-240 3-37 (169)
316 2jaq_A Deoxyguanosine kinase; 93.1 0.047 1.6E-06 55.8 3.3 25 210-234 2-26 (205)
317 3ice_A Transcription terminati 93.0 0.13 4.5E-06 57.0 7.0 41 194-236 162-202 (422)
318 1tev_A UMP-CMP kinase; ploop, 93.0 0.056 1.9E-06 54.7 3.8 25 208-232 3-27 (196)
319 4eun_A Thermoresistant glucoki 93.0 0.071 2.4E-06 54.4 4.6 26 207-232 28-53 (200)
320 1kht_A Adenylate kinase; phosp 93.0 0.053 1.8E-06 54.7 3.6 26 209-234 4-29 (192)
321 1via_A Shikimate kinase; struc 93.0 0.049 1.7E-06 54.3 3.2 24 210-233 6-29 (175)
322 1knq_A Gluconate kinase; ALFA/ 92.9 0.06 2E-06 53.5 3.8 25 208-232 8-32 (175)
323 3t61_A Gluconokinase; PSI-biol 92.9 0.046 1.6E-06 55.9 3.0 25 208-232 18-42 (202)
324 1xp8_A RECA protein, recombina 92.9 0.4 1.4E-05 53.7 10.9 51 193-243 58-109 (366)
325 1ukz_A Uridylate kinase; trans 92.8 0.062 2.1E-06 54.9 3.9 27 206-232 13-39 (203)
326 3dzd_A Transcriptional regulat 92.7 1.6 5.6E-05 48.9 15.8 50 184-233 128-177 (368)
327 2plr_A DTMP kinase, probable t 92.7 0.099 3.4E-06 53.7 5.3 28 209-236 5-32 (213)
328 2c95_A Adenylate kinase 1; tra 92.7 0.053 1.8E-06 55.0 3.1 25 208-232 9-33 (196)
329 2pt7_A CAG-ALFA; ATPase, prote 92.7 0.12 4.3E-06 57.1 6.3 102 209-328 172-276 (330)
330 3cm0_A Adenylate kinase; ATP-b 92.6 0.069 2.3E-06 53.7 3.8 25 208-232 4-28 (186)
331 2vli_A Antibiotic resistance p 92.6 0.05 1.7E-06 54.5 2.8 26 208-233 5-30 (183)
332 2pt5_A Shikimate kinase, SK; a 92.6 0.068 2.3E-06 52.7 3.7 24 210-233 2-25 (168)
333 1tue_A Replication protein E1; 92.6 0.089 3E-06 53.1 4.4 46 188-234 39-84 (212)
334 1y63_A LMAJ004144AAA protein; 92.6 0.066 2.3E-06 53.8 3.6 25 207-231 9-33 (184)
335 2iyv_A Shikimate kinase, SK; t 92.5 0.064 2.2E-06 53.8 3.4 24 210-233 4-27 (184)
336 3tau_A Guanylate kinase, GMP k 92.5 0.053 1.8E-06 55.8 2.9 28 207-234 7-34 (208)
337 2r2a_A Uncharacterized protein 92.5 0.21 7.3E-06 50.7 7.3 22 210-231 7-28 (199)
338 1e6c_A Shikimate kinase; phosp 92.5 0.05 1.7E-06 53.9 2.5 25 209-233 3-27 (173)
339 3a00_A Guanylate kinase, GMP k 92.5 0.047 1.6E-06 55.1 2.3 29 209-237 2-30 (186)
340 1g41_A Heat shock protein HSLU 92.4 0.098 3.4E-06 59.9 5.1 51 186-236 16-78 (444)
341 1nn5_A Similar to deoxythymidy 92.4 0.089 3E-06 54.2 4.4 29 208-236 9-37 (215)
342 1uf9_A TT1252 protein; P-loop, 92.4 0.073 2.5E-06 54.3 3.7 26 206-231 6-31 (203)
343 1uj2_A Uridine-cytidine kinase 92.4 0.072 2.5E-06 56.6 3.8 28 206-233 20-47 (252)
344 2bwj_A Adenylate kinase 5; pho 92.4 0.069 2.4E-06 54.3 3.5 25 209-233 13-37 (199)
345 1qf9_A UMP/CMP kinase, protein 92.3 0.076 2.6E-06 53.6 3.8 26 208-233 6-31 (194)
346 2bdt_A BH3686; alpha-beta prot 92.3 0.074 2.5E-06 53.7 3.6 22 209-230 3-24 (189)
347 2cdn_A Adenylate kinase; phosp 92.2 0.077 2.6E-06 54.1 3.7 26 208-233 20-45 (201)
348 4a1f_A DNAB helicase, replicat 92.2 0.15 5.1E-06 56.3 6.2 71 189-267 28-98 (338)
349 2r6a_A DNAB helicase, replicat 92.2 0.62 2.1E-05 54.1 11.7 51 207-264 202-253 (454)
350 2qor_A Guanylate kinase; phosp 92.2 0.055 1.9E-06 55.4 2.5 27 207-233 11-37 (204)
351 1cke_A CK, MSSA, protein (cyti 92.2 0.077 2.6E-06 55.3 3.6 25 209-233 6-30 (227)
352 2pbr_A DTMP kinase, thymidylat 92.1 0.08 2.7E-06 53.5 3.6 25 210-234 2-26 (195)
353 3umf_A Adenylate kinase; rossm 92.1 0.094 3.2E-06 54.1 4.1 27 206-232 27-53 (217)
354 3a4m_A L-seryl-tRNA(SEC) kinas 92.1 0.084 2.9E-06 56.4 3.8 26 208-233 4-29 (260)
355 2grj_A Dephospho-COA kinase; T 92.0 0.09 3.1E-06 53.2 3.7 26 207-232 11-36 (192)
356 3p32_A Probable GTPase RV1496/ 92.0 0.22 7.6E-06 55.8 7.4 41 195-235 66-106 (355)
357 1aky_A Adenylate kinase; ATP:A 92.0 0.073 2.5E-06 55.2 3.1 26 208-233 4-29 (220)
358 2if2_A Dephospho-COA kinase; a 91.9 0.077 2.6E-06 54.3 3.2 21 210-230 3-23 (204)
359 1pgv_A TMD-1, tropomodulin TMD 91.9 0.14 4.9E-06 51.6 5.0 88 772-866 37-135 (197)
360 3asz_A Uridine kinase; cytidin 91.8 0.1 3.4E-06 53.7 4.0 27 207-233 5-31 (211)
361 3ney_A 55 kDa erythrocyte memb 91.8 0.071 2.4E-06 54.0 2.7 28 207-234 18-45 (197)
362 2qt1_A Nicotinamide riboside k 91.8 0.09 3.1E-06 53.9 3.6 27 206-232 19-45 (207)
363 3tr0_A Guanylate kinase, GMP k 91.8 0.085 2.9E-06 53.9 3.3 24 209-232 8-31 (205)
364 2q6t_A DNAB replication FORK h 91.8 0.29 9.8E-06 56.8 8.2 64 195-266 188-252 (444)
365 2wwf_A Thymidilate kinase, put 91.7 0.092 3.1E-06 54.0 3.5 28 208-235 10-37 (212)
366 3fwy_A Light-independent proto 91.7 0.14 4.8E-06 56.2 5.2 38 206-243 46-83 (314)
367 3gmt_A Adenylate kinase; ssgci 91.7 0.26 8.8E-06 51.0 6.8 23 210-232 10-32 (230)
368 2px0_A Flagellar biosynthesis 91.6 0.22 7.6E-06 54.1 6.6 28 207-234 104-131 (296)
369 2bbw_A Adenylate kinase 4, AK4 91.6 0.095 3.3E-06 55.5 3.6 26 208-233 27-52 (246)
370 2z0h_A DTMP kinase, thymidylat 91.6 0.21 7.3E-06 50.4 6.2 25 210-234 2-26 (197)
371 2ffh_A Protein (FFH); SRP54, s 91.6 0.44 1.5E-05 54.3 9.3 29 207-235 97-125 (425)
372 1gvn_B Zeta; postsegregational 91.6 0.17 5.8E-06 54.8 5.6 26 207-232 32-57 (287)
373 2j41_A Guanylate kinase; GMP, 91.6 0.091 3.1E-06 53.7 3.3 25 208-232 6-30 (207)
374 2pez_A Bifunctional 3'-phospho 91.5 0.12 3.9E-06 51.7 4.0 27 208-234 5-31 (179)
375 4a74_A DNA repair and recombin 91.5 0.15 5.2E-06 53.0 5.1 28 206-233 23-50 (231)
376 1jjv_A Dephospho-COA kinase; P 91.5 0.095 3.2E-06 53.7 3.4 22 209-230 3-24 (206)
377 3fb4_A Adenylate kinase; psych 91.5 0.1 3.5E-06 53.9 3.6 23 210-232 2-24 (216)
378 1n0w_A DNA repair protein RAD5 91.5 0.22 7.5E-06 52.3 6.3 47 197-243 13-65 (243)
379 4gp7_A Metallophosphoesterase; 91.5 0.081 2.8E-06 52.5 2.7 22 207-228 8-29 (171)
380 3upu_A ATP-dependent DNA helic 91.5 0.68 2.3E-05 53.9 11.0 28 210-237 47-74 (459)
381 2v3c_C SRP54, signal recogniti 91.4 0.16 5.5E-06 58.3 5.5 36 207-242 98-133 (432)
382 2j37_W Signal recognition part 91.4 0.61 2.1E-05 54.4 10.4 30 206-235 99-128 (504)
383 1ny5_A Transcriptional regulat 91.2 1.7 5.7E-05 49.2 13.7 48 185-232 137-184 (387)
384 2p5t_B PEZT; postsegregational 91.2 0.15 5.3E-06 54.1 4.7 27 207-233 31-57 (253)
385 3k1j_A LON protease, ATP-depen 91.2 0.11 3.9E-06 62.8 4.1 52 181-236 37-88 (604)
386 1zd8_A GTP:AMP phosphotransfer 91.1 0.1 3.5E-06 54.4 3.2 25 208-232 7-31 (227)
387 3dl0_A Adenylate kinase; phosp 91.1 0.11 3.7E-06 53.7 3.3 23 210-232 2-24 (216)
388 1zak_A Adenylate kinase; ATP:A 91.1 0.086 2.9E-06 54.8 2.5 26 208-233 5-30 (222)
389 1fx0_B ATP synthase beta chain 91.0 0.21 7.3E-06 57.3 5.9 53 208-264 165-218 (498)
390 3nwj_A ATSK2; P loop, shikimat 91.0 0.088 3E-06 55.7 2.5 25 209-233 49-73 (250)
391 1m7g_A Adenylylsulfate kinase; 91.0 0.14 4.9E-06 52.6 4.1 27 207-233 24-50 (211)
392 2ck3_D ATP synthase subunit be 90.9 0.52 1.8E-05 53.9 8.9 53 208-264 153-206 (482)
393 2dr3_A UPF0273 protein PH0284; 90.9 0.16 5.3E-06 53.6 4.4 36 208-243 23-58 (247)
394 4e22_A Cytidylate kinase; P-lo 90.9 0.11 3.9E-06 55.1 3.3 26 208-233 27-52 (252)
395 1puj_A YLQF, conserved hypothe 90.9 1.5 5E-05 47.2 12.2 50 52-107 13-62 (282)
396 2wsm_A Hydrogenase expression/ 90.8 0.24 8.2E-06 51.2 5.7 46 189-236 13-58 (221)
397 3d3q_A TRNA delta(2)-isopenten 90.8 0.13 4.4E-06 56.7 3.7 25 209-233 8-32 (340)
398 3l0o_A Transcription terminati 90.7 0.42 1.4E-05 53.0 7.5 40 194-235 163-202 (427)
399 1gtv_A TMK, thymidylate kinase 90.7 0.072 2.5E-06 54.9 1.5 25 210-234 2-26 (214)
400 2jeo_A Uridine-cytidine kinase 90.7 0.15 5.2E-06 53.9 4.0 27 206-232 23-49 (245)
401 3be4_A Adenylate kinase; malar 90.7 0.11 3.7E-06 53.8 2.8 24 209-232 6-29 (217)
402 2f6r_A COA synthase, bifunctio 90.7 0.14 4.6E-06 55.5 3.7 25 206-230 73-97 (281)
403 3bgw_A DNAB-like replicative h 90.7 0.3 1E-05 56.5 6.8 53 206-265 195-247 (444)
404 3ake_A Cytidylate kinase; CMP 90.6 0.14 5E-06 52.2 3.7 24 210-233 4-27 (208)
405 2j9r_A Thymidine kinase; TK1, 90.5 0.67 2.3E-05 47.2 8.4 111 207-328 27-139 (214)
406 3aez_A Pantothenate kinase; tr 90.5 0.16 5.4E-06 55.7 4.1 28 206-233 88-115 (312)
407 1lvg_A Guanylate kinase, GMP k 90.5 0.1 3.5E-06 53.2 2.4 25 209-233 5-29 (198)
408 2v54_A DTMP kinase, thymidylat 90.5 0.12 4.1E-06 52.7 3.0 24 209-232 5-28 (204)
409 1rj9_A FTSY, signal recognitio 90.4 0.2 7E-06 54.6 4.8 35 207-242 101-135 (304)
410 2hf9_A Probable hydrogenase ni 90.3 0.42 1.5E-05 49.4 7.1 40 194-235 26-65 (226)
411 1vht_A Dephospho-COA kinase; s 90.3 0.16 5.6E-06 52.4 3.8 23 208-230 4-26 (218)
412 2xb4_A Adenylate kinase; ATP-b 90.2 0.16 5.4E-06 52.8 3.6 23 210-232 2-24 (223)
413 1e4v_A Adenylate kinase; trans 90.2 0.16 5.3E-06 52.4 3.5 23 210-232 2-24 (214)
414 1svm_A Large T antigen; AAA+ f 90.0 0.24 8.3E-06 55.6 5.1 32 201-232 162-193 (377)
415 3r20_A Cytidylate kinase; stru 90.0 0.16 5.6E-06 52.8 3.5 26 208-233 9-34 (233)
416 3a8t_A Adenylate isopentenyltr 90.0 0.12 3.9E-06 56.8 2.3 27 207-233 39-65 (339)
417 3crm_A TRNA delta(2)-isopenten 90.0 0.15 5E-06 55.8 3.1 25 209-233 6-30 (323)
418 2z43_A DNA repair and recombin 89.9 0.36 1.2E-05 53.3 6.4 47 197-243 96-148 (324)
419 1htw_A HI0065; nucleotide-bind 89.9 0.26 9E-06 48.0 4.7 27 206-232 31-57 (158)
420 1ak2_A Adenylate kinase isoenz 89.9 0.16 5.6E-06 53.1 3.5 26 208-233 16-41 (233)
421 1znw_A Guanylate kinase, GMP k 89.9 0.15 5.3E-06 52.2 3.2 26 208-233 20-45 (207)
422 1a7j_A Phosphoribulokinase; tr 89.8 0.12 4E-06 56.2 2.2 27 207-233 4-30 (290)
423 2ehv_A Hypothetical protein PH 89.7 0.23 7.8E-06 52.4 4.5 37 207-243 29-66 (251)
424 1g8f_A Sulfate adenylyltransfe 89.6 0.31 1E-05 57.0 5.7 49 186-234 373-421 (511)
425 3e1s_A Exodeoxyribonuclease V, 89.6 0.73 2.5E-05 55.1 9.1 33 209-241 205-237 (574)
426 3exa_A TRNA delta(2)-isopenten 89.5 0.19 6.4E-06 54.5 3.5 25 208-232 3-27 (322)
427 1np6_A Molybdopterin-guanine d 89.4 0.28 9.5E-06 48.6 4.5 27 208-234 6-32 (174)
428 2i3b_A HCR-ntpase, human cance 89.3 0.18 6.1E-06 50.8 3.0 24 210-233 3-26 (189)
429 1z6g_A Guanylate kinase; struc 89.3 0.16 5.5E-06 52.6 2.8 25 208-232 23-47 (218)
430 3zvl_A Bifunctional polynucleo 89.3 0.76 2.6E-05 52.6 8.7 27 206-232 256-282 (416)
431 2f1r_A Molybdopterin-guanine d 89.2 0.13 4.5E-06 50.9 1.9 27 209-235 3-29 (171)
432 3cr8_A Sulfate adenylyltranfer 89.2 0.4 1.4E-05 56.8 6.3 29 207-235 368-396 (552)
433 1cr0_A DNA primase/helicase; R 89.1 0.52 1.8E-05 51.3 6.9 37 207-243 34-71 (296)
434 1t9h_A YLOQ, probable GTPase E 89.0 0.64 2.2E-05 50.5 7.4 47 59-107 83-129 (307)
435 1q3t_A Cytidylate kinase; nucl 89.0 0.22 7.4E-06 52.3 3.5 27 206-232 14-40 (236)
436 1yrb_A ATP(GTP)binding protein 88.9 0.37 1.3E-05 51.2 5.4 27 207-233 13-39 (262)
437 3foz_A TRNA delta(2)-isopenten 88.9 0.22 7.5E-06 53.8 3.5 26 207-232 9-34 (316)
438 3end_A Light-independent proto 88.9 0.33 1.1E-05 53.1 5.2 38 206-243 39-76 (307)
439 1sq5_A Pantothenate kinase; P- 88.9 0.25 8.5E-06 54.2 4.1 28 206-233 78-105 (308)
440 4eaq_A DTMP kinase, thymidylat 88.9 0.44 1.5E-05 49.6 5.8 28 207-234 25-52 (229)
441 1u0j_A DNA replication protein 88.6 0.34 1.2E-05 51.2 4.7 40 193-232 89-128 (267)
442 1ltq_A Polynucleotide kinase; 88.6 0.24 8.2E-06 54.1 3.7 23 209-231 3-25 (301)
443 2zts_A Putative uncharacterize 88.6 0.26 8.9E-06 51.9 3.9 37 207-243 29-66 (251)
444 4edh_A DTMP kinase, thymidylat 88.5 0.65 2.2E-05 47.7 6.7 28 208-235 6-33 (213)
445 1s96_A Guanylate kinase, GMP k 88.5 0.23 7.9E-06 51.3 3.3 26 208-233 16-41 (219)
446 1cp2_A CP2, nitrogenase iron p 88.4 0.39 1.3E-05 51.3 5.2 35 209-243 2-36 (269)
447 2qmh_A HPR kinase/phosphorylas 88.4 0.22 7.4E-06 50.0 2.8 24 209-232 35-58 (205)
448 4akg_A Glutathione S-transfera 88.4 0.68 2.3E-05 64.6 8.6 138 209-359 1268-1431(2695)
449 3lnc_A Guanylate kinase, GMP k 88.3 0.17 5.7E-06 52.9 2.1 25 208-232 27-52 (231)
450 1ls1_A Signal recognition part 88.3 0.4 1.4E-05 52.1 5.2 29 207-235 97-125 (295)
451 1q57_A DNA primase/helicase; d 88.2 1.6 5.4E-05 51.4 10.8 55 206-267 240-295 (503)
452 1pzn_A RAD51, DNA repair and r 88.2 0.42 1.4E-05 53.3 5.4 34 199-232 122-155 (349)
453 2r8r_A Sensor protein; KDPD, P 88.2 0.39 1.3E-05 49.4 4.6 27 209-235 7-33 (228)
454 3b85_A Phosphate starvation-in 88.0 0.23 7.9E-06 50.8 2.9 23 209-231 23-45 (208)
455 2p67_A LAO/AO transport system 87.9 0.7 2.4E-05 51.3 7.0 31 205-235 53-83 (341)
456 2ocp_A DGK, deoxyguanosine kin 87.8 0.29 9.8E-06 51.5 3.5 26 208-233 2-27 (241)
457 2i1q_A DNA repair and recombin 87.6 0.7 2.4E-05 50.9 6.8 37 196-232 86-122 (322)
458 4hlc_A DTMP kinase, thymidylat 87.6 0.47 1.6E-05 48.4 4.9 30 209-238 3-32 (205)
459 2axn_A 6-phosphofructo-2-kinas 87.6 0.44 1.5E-05 56.2 5.3 30 207-236 34-63 (520)
460 3cmu_A Protein RECA, recombina 87.5 0.65 2.2E-05 62.5 7.4 48 196-243 1414-1462(2050)
461 2rcn_A Probable GTPase ENGC; Y 87.5 2 6.9E-05 47.6 10.2 23 209-231 216-238 (358)
462 2onk_A Molybdate/tungstate ABC 87.4 0.28 9.7E-06 51.4 3.2 25 206-231 23-47 (240)
463 2afh_E Nitrogenase iron protei 87.3 0.48 1.7E-05 51.3 5.1 35 208-242 2-36 (289)
464 3eph_A TRNA isopentenyltransfe 87.2 0.33 1.1E-05 54.5 3.7 25 209-233 3-27 (409)
465 1nlf_A Regulatory protein REPA 87.1 0.5 1.7E-05 50.9 5.0 27 208-234 30-56 (279)
466 2qm8_A GTPase/ATPase; G protei 87.1 0.74 2.5E-05 51.0 6.5 30 205-234 52-81 (337)
467 3tif_A Uncharacterized ABC tra 87.0 0.26 8.9E-06 51.6 2.6 23 208-230 31-53 (235)
468 2pcj_A ABC transporter, lipopr 87.0 0.26 8.8E-06 51.2 2.5 23 209-231 31-53 (224)
469 1ypw_A Transitional endoplasmi 86.8 0.29 9.9E-06 61.2 3.3 54 183-236 475-539 (806)
470 1oix_A RAS-related protein RAB 86.8 0.34 1.2E-05 48.8 3.2 25 207-231 28-52 (191)
471 3hjn_A DTMP kinase, thymidylat 86.7 0.9 3.1E-05 46.0 6.3 33 210-242 2-34 (197)
472 3cmw_A Protein RECA, recombina 86.6 0.83 2.8E-05 60.7 7.5 93 196-298 1418-1518(1706)
473 2dyk_A GTP-binding protein; GT 86.5 0.4 1.4E-05 46.2 3.6 23 209-231 2-24 (161)
474 2cbz_A Multidrug resistance-as 86.5 0.29 1E-05 51.3 2.6 25 208-232 31-55 (237)
475 3v9p_A DTMP kinase, thymidylat 86.4 0.69 2.4E-05 47.9 5.4 28 208-235 25-52 (227)
476 3ld9_A DTMP kinase, thymidylat 86.4 0.86 3E-05 47.0 6.1 28 207-234 20-47 (223)
477 3fdi_A Uncharacterized protein 86.3 0.39 1.3E-05 48.9 3.4 25 209-233 7-31 (201)
478 2d2e_A SUFC protein; ABC-ATPas 86.2 0.35 1.2E-05 51.1 3.2 23 209-231 30-52 (250)
479 3gfo_A Cobalt import ATP-bindi 86.2 0.3 1E-05 52.3 2.6 22 209-230 35-56 (275)
480 2wji_A Ferrous iron transport 86.2 0.44 1.5E-05 46.5 3.7 22 209-230 4-25 (165)
481 3cnl_A YLQF, putative uncharac 86.1 1.1 3.6E-05 47.7 6.8 48 52-107 11-58 (262)
482 1b0u_A Histidine permease; ABC 86.0 0.32 1.1E-05 51.9 2.6 25 207-231 31-55 (262)
483 3vkw_A Replicase large subunit 86.0 3.2 0.00011 47.2 11.0 39 192-230 142-183 (446)
484 2zu0_C Probable ATP-dependent 85.9 0.37 1.3E-05 51.5 3.2 24 208-231 46-69 (267)
485 4g1u_C Hemin import ATP-bindin 85.9 0.32 1.1E-05 51.9 2.6 24 208-231 37-60 (266)
486 2qi9_C Vitamin B12 import ATP- 85.9 0.32 1.1E-05 51.4 2.6 32 209-242 27-58 (249)
487 1tq4_A IIGP1, interferon-induc 85.8 0.36 1.2E-05 54.9 3.1 36 196-231 57-92 (413)
488 1ji0_A ABC transporter; ATP bi 85.8 0.33 1.1E-05 51.0 2.6 22 209-230 33-54 (240)
489 1mv5_A LMRA, multidrug resista 85.7 0.36 1.2E-05 50.8 2.9 24 207-230 27-50 (243)
490 3lv8_A DTMP kinase, thymidylat 85.7 0.9 3.1E-05 47.3 5.9 35 208-242 27-62 (236)
491 2f9l_A RAB11B, member RAS onco 85.7 0.42 1.4E-05 48.4 3.3 24 208-231 5-28 (199)
492 1sgw_A Putative ABC transporte 85.7 0.29 9.8E-06 50.4 2.1 23 209-231 36-58 (214)
493 3lda_A DNA repair protein RAD5 85.7 0.84 2.9E-05 51.7 6.1 48 196-243 166-219 (400)
494 4dzz_A Plasmid partitioning pr 85.7 0.62 2.1E-05 47.3 4.6 35 209-243 2-37 (206)
495 1g6h_A High-affinity branched- 85.7 0.34 1.1E-05 51.5 2.6 24 208-231 33-56 (257)
496 2olj_A Amino acid ABC transpor 85.7 0.34 1.2E-05 51.6 2.6 24 208-231 50-73 (263)
497 2pze_A Cystic fibrosis transme 85.6 0.35 1.2E-05 50.4 2.6 24 209-232 35-58 (229)
498 3cmw_A Protein RECA, recombina 85.5 1.3 4.4E-05 59.0 8.5 53 191-243 714-767 (1706)
499 2v9p_A Replication protein E1; 85.5 0.41 1.4E-05 52.0 3.3 27 206-232 124-150 (305)
500 4tmk_A Protein (thymidylate ki 85.5 1 3.5E-05 46.2 6.1 34 209-242 4-38 (213)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.2e-50 Score=397.22 Aligned_cols=170 Identities=45% Similarity=0.734 Sum_probs=145.3
Q ss_pred CCCCCCcccEEEcccccccCCchHHHHHHHHhcCCCcEEEcC-CCCCCCcchHHHHHHhhhcceeEEEeccccccchhhH
Q 046314 3 SSSPSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWCL 81 (1137)
Q Consensus 3 ~~~~~~~~dvFis~~~~d~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~ 81 (1137)
|||..++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++||++|||||+||++|+||+
T Consensus 2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl 81 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL 81 (176)
T ss_dssp -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence 456789999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeecCcccccccccchHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccCCCCcccCchhhH
Q 046314 82 NELVKILKCKNLKGQTVIPIYYHVSPSDVRKQTGTFGEGFVKLEQQFKEKAETVRKWRDAMIKTSYLSGHESTKIRPEAK 161 (1137)
Q Consensus 82 ~el~~~~~~~~~~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~~~~~g~~~~~~~~e~~ 161 (1137)
+||++|++|.+.++++|+||||+|||+|||+|+|+||+||++|+++ .+.+++++||+||++||+++||+. .++|++
T Consensus 82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~--~~~e~~ 157 (176)
T 3jrn_A 82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS--GDDDSK 157 (176)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC--CSCHHH
T ss_pred HHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec--CCCHHH
Confidence 9999999999999999999999999999999999999999999987 578999999999999999999987 467999
Q ss_pred HHHHHHHHHHHhcccc
Q 046314 162 LVQVIVNDILKKLECK 177 (1137)
Q Consensus 162 ~i~~i~~~v~~~l~~~ 177 (1137)
+|++||++|.++| ++
T Consensus 158 ~i~~Iv~~v~~~l-~~ 172 (176)
T 3jrn_A 158 LVDKIANEISNKK-TI 172 (176)
T ss_dssp HHHHHHHHHHTTC-C-
T ss_pred HHHHHHHHHHHHh-cC
Confidence 9999999999999 65
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.5e-48 Score=391.15 Aligned_cols=167 Identities=44% Similarity=0.767 Sum_probs=159.2
Q ss_pred CCCcccEEEcccccccCCchHHHHHHHHhcCCCcEEEcC-CCCCCCcchHHHHHHhhhcceeEEEeccccccchhhHHHH
Q 046314 6 PSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWCLNEL 84 (1137)
Q Consensus 6 ~~~~~dvFis~~~~d~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el 84 (1137)
+.++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++||++|||||++|++|.||++||
T Consensus 32 ~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL 111 (204)
T 3ozi_A 32 PSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMEL 111 (204)
T ss_dssp --CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHH
T ss_pred CCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHH
Confidence 468999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc-CCCeEEEEEeecCcccccccccchHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccCCCCcccCchhhHHH
Q 046314 85 VKILKCKNL-KGQTVIPIYYHVSPSDVRKQTGTFGEGFVKLEQQFKEKAETVRKWRDAMIKTSYLSGHESTKIRPEAKLV 163 (1137)
Q Consensus 85 ~~~~~~~~~-~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~~~~~g~~~~~~~~e~~~i 163 (1137)
++|++|.+. ++++||||||+|||++||+|+|+||+||++|++++ +.+++++||+||++||+++||+...+..|+++|
T Consensus 112 ~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i 189 (204)
T 3ozi_A 112 AEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIA 189 (204)
T ss_dssp HHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHH
T ss_pred HHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCCCHHHHH
Confidence 999999865 68999999999999999999999999999999875 458999999999999999999998889999999
Q ss_pred HHHHHHHHHhc
Q 046314 164 QVIVNDILKKL 174 (1137)
Q Consensus 164 ~~i~~~v~~~l 174 (1137)
++||++|+++|
T Consensus 190 ~~Iv~di~~kl 200 (204)
T 3ozi_A 190 DKVSADIWSHI 200 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999998
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.3e-39 Score=393.52 Aligned_cols=298 Identities=16% Similarity=0.169 Sum_probs=237.8
Q ss_pred cchhhHHHHHHHhhccC-CCCeEEEEEEccCCChhhHHHHHHHH----HhhccCCceEEEeeccchhccC--cChHHHHH
Q 046314 188 VGLNSRIECIKSLLCVG-FPDVRIVGIWGMGGIGKTTLAKALFN----QVSNEFEGNCFIENVREEIENG--VGLVHLHK 260 (1137)
Q Consensus 188 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~~s~~--~~~~~l~~ 260 (1137)
|||+.++++|.++|..+ .+++++|+|+|||||||||||+++|+ +++.+|+.++|+. ++.. +++..+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-----vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-----DSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-----CCCCSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-----ECCCCCCCHHHHHH
Confidence 59999999999999754 34689999999999999999999997 6889999999995 4434 47889999
Q ss_pred HHHHHHhCccc--cC-CCCC-----ccHHHHHhhcCC-ceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhHH
Q 046314 261 QVVSLLLGERI--EM-GGPN-----IPAYTLERLRRT-KVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLR 331 (1137)
Q Consensus 261 ~ll~~l~~~~~--~~-~~~~-----~~~~l~~~L~~k-r~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 331 (1137)
.++.++..... .. .... +...+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++.
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHH
Confidence 99999876532 11 1111 357788899996 999999999999876 3332 27999999999999987
Q ss_pred hhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhhccCCHHHHHHHHH-HHh
Q 046314 332 KHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSLHQKSKLDWENVLD-NLK 410 (1137)
Q Consensus 332 ~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~~~~~~~w~~~l~-~l~ 410 (1137)
.++.. ..+|+|++|+.+||++||.++||+... .+.+.+++++|+++|+|+||||+++|+.|+.+. .+|...+. .+.
T Consensus 280 ~~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~ 356 (549)
T 2a5y_B 280 AASQT-CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLE 356 (549)
T ss_dssp GCCSC-EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHH
T ss_pred HcCCC-CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhh
Confidence 66522 137999999999999999999987643 367788999999999999999999999998774 23333332 233
Q ss_pred ccCCcccHHHHHHHhhccCChhhHhHhh-----------hcccccCCcCHHHHHHHHhhc--CCc-----------hhHH
Q 046314 411 QISGVSRIYNVLRISYEELSFEEKSTFL-----------DIACFFKGECKDRVLMLLHDR--QYN-----------VTHV 466 (1137)
Q Consensus 411 ~~~~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~~~~~--~~~-----------~~~~ 466 (1137)
..+. ..+..++++||+.|+++.|.||+ +||+||+++.++ +.+|.+. |+. +..+
T Consensus 357 ~~~~-~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~ 433 (549)
T 2a5y_B 357 SRGL-VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADR 433 (549)
T ss_dssp HHCS-STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHH
T ss_pred cccH-HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHH
Confidence 3233 67888999999999999999999 999999998877 5677776 432 2347
Q ss_pred HHHHHhccCceee----CCeEEehHHHHHHHHHhhhccCc
Q 046314 467 LSILIDKSLITEH----NNRLHMHELLQEMGQEIVRQEDI 502 (1137)
Q Consensus 467 l~~L~~~sLi~~~----~~~~~mHdll~~~~~~i~~~e~~ 502 (1137)
+++|+++||++.. ..+|.|||++|+||++++.+++.
T Consensus 434 l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 434 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 9999999999876 24799999999999999987763
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-34 Score=390.54 Aligned_cols=307 Identities=23% Similarity=0.268 Sum_probs=241.8
Q ss_pred cCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHH---hhccCCceEEEeeccchhccCcCh
Q 046314 179 ISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQ---VSNEFEGNCFIENVREEIENGVGL 255 (1137)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~s~~~~~ 255 (1137)
..|..++.||||+.++++|.++|..+.+++++|+|+||||+||||||+++|++ ....|...+|+.++++ . .....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK-Q-DKSGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS-C-CHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC-c-CchHH
Confidence 45667788999999999999999766678999999999999999999999986 4666877775555443 1 11223
Q ss_pred HHHHHHHHHHHhCccccC-CC----CCccHHHHHhhcCC--ceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 256 VHLHKQVVSLLLGERIEM-GG----PNIPAYTLERLRRT--KVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~-~~----~~~~~~l~~~L~~k--r~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
......++..+....... .. ....+.++..+.++ |+||||||||+.++++.+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 344555666665443211 11 12334455555555 999999999999876653 68999999999998
Q ss_pred hHHh-hCCCCccEEEEcc-CCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhhccCCHHHHHHHH
Q 046314 329 VLRK-HGVNDEYVYEVER-LNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSLHQKSKLDWENVL 406 (1137)
Q Consensus 329 v~~~-~~~~~~~~~~v~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~~~~~~~w~~~l 406 (1137)
++.. .+... .+++++ |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.++ ..|+..+
T Consensus 269 ~~~~~~~~~~--~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l 342 (1249)
T 3sfz_A 269 VTDSVMGPKH--VVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYL 342 (1249)
T ss_dssp TTTTCCSCBC--CEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHH
T ss_pred HHHhhcCCce--EEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHH
Confidence 8744 23333 899996 99999999999988543 233456789999999999999999999998776 5799999
Q ss_pred HHHhccCC----------cccHHHHHHHhhccCChhhHhHhhhcccccCCcC--HHHHHHHHhhcCCchhHHHHHHHhcc
Q 046314 407 DNLKQISG----------VSRIYNVLRISYEELSFEEKSTFLDIACFFKGEC--KDRVLMLLHDRQYNVTHVLSILIDKS 474 (1137)
Q Consensus 407 ~~l~~~~~----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~~~~~l~~L~~~s 474 (1137)
+++..... ...+..++++||+.|++++|.||+++|+||+++. .+.+..+|...+..++.++++|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKS 422 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 98865431 1358999999999999999999999999999864 47889999888888899999999999
Q ss_pred Cceee-CC---eEEehHHHHHHHHHhhhcc
Q 046314 475 LITEH-NN---RLHMHELLQEMGQEIVRQE 500 (1137)
Q Consensus 475 Li~~~-~~---~~~mHdll~~~~~~i~~~e 500 (1137)
|++.. ++ +|.||+++|+++++...++
T Consensus 423 l~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 423 LLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99987 33 4999999999999987665
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.3e-34 Score=345.21 Aligned_cols=278 Identities=21% Similarity=0.205 Sum_probs=213.3
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHH--HhhccCCceEEEeeccchhccCcChHHHHHHH
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFN--QVSNEFEGNCFIENVREEIENGVGLVHLHKQV 262 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~l 262 (1137)
+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+..++|.++ +...+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsV----s~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL----KNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEEC----CCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEe----CCCCCHHHHHHHH
Confidence 34599999999999998743 3489999999999999999999997 578899984444444 4455666666666
Q ss_pred HHHHhCcc---c-cCCC--------CCccHHHHHhh---cCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCCh
Q 046314 263 VSLLLGER---I-EMGG--------PNIPAYTLERL---RRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDK 327 (1137)
Q Consensus 263 l~~l~~~~---~-~~~~--------~~~~~~l~~~L---~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~ 327 (1137)
+..+.... . .... ....+.+++.| .++|+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 55432211 0 0000 11233455544 6899999999999999988752 799999999999
Q ss_pred hhHHhhCCCCccEEEEc------cCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhhccC--CH
Q 046314 328 QVLRKHGVNDEYVYEVE------RLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSLHQK--SK 399 (1137)
Q Consensus 328 ~v~~~~~~~~~~~~~v~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~~~--~~ 399 (1137)
.++..+.... .|+|+ +|+.+||++||+++. +.. . .++..++ |+|+||||+++|+.|+++ +.
T Consensus 276 ~Va~~l~g~~--vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHS--SCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCe--EEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 9876443222 56777 999999999999984 322 1 2333333 999999999999999987 67
Q ss_pred HHHHHHHHHHhccCCcccHHHHHHHhhccCChhh-HhHhhhcccccCCcCH--HHHHHHHhhcCC-chhHHHHHHHhccC
Q 046314 400 LDWENVLDNLKQISGVSRIYNVLRISYEELSFEE-KSTFLDIACFFKGECK--DRVLMLLHDRQY-NVTHVLSILIDKSL 475 (1137)
Q Consensus 400 ~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~~--~~l~~~~~~~~~-~~~~~l~~L~~~sL 475 (1137)
.+|+.. .. ..+..+|+.||+.|++++ |.||+++|+||++..+ +.+..+|.+.+. ++..++++|+++||
T Consensus 345 eeW~~~-------~~-~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSL 416 (1221)
T 1vt4_I 345 DNWKHV-------NC-DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416 (1221)
T ss_dssp HHHHHC-------SC-HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSS
T ss_pred HHHhcC-------Ch-hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Confidence 788653 23 789999999999999999 9999999999987655 668889988753 57889999999999
Q ss_pred ceee--CCeEEehHHHHHHH
Q 046314 476 ITEH--NNRLHMHELLQEMG 493 (1137)
Q Consensus 476 i~~~--~~~~~mHdll~~~~ 493 (1137)
++.. .++|+|||++++++
T Consensus 417 Lq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 417 VEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SSBCSSSSEEBCCCHHHHHH
T ss_pred EEEeCCCCEEEehHHHHHHh
Confidence 9986 46899999998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=347.94 Aligned_cols=339 Identities=20% Similarity=0.241 Sum_probs=248.1
Q ss_pred cCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh---hccCCc-eEEEeeccchhccCcC
Q 046314 179 ISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV---SNEFEG-NCFIENVREEIENGVG 254 (1137)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~F~~-~~~~~~~~~~~s~~~~ 254 (1137)
..|..+..||||+.++++|.++|....++.++|+|+||||+||||||++++++. +..|+. ++|+. +.. . +
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~----~-~ 191 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGK----Q-D 191 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EES----C-C
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCC----C-c
Confidence 346677889999999999999997655678999999999999999999999854 778964 55554 332 1 2
Q ss_pred hHHHHHH---HHHHHhCccc--cCCC---CCccHHHHHhhcC--CceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEe
Q 046314 255 LVHLHKQ---VVSLLLGERI--EMGG---PNIPAYTLERLRR--TKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTT 324 (1137)
Q Consensus 255 ~~~l~~~---ll~~l~~~~~--~~~~---~~~~~~l~~~L~~--kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTT 324 (1137)
...+... ++..+..... .... ......++..+.+ +++||||||||+..+++. +++|++|||||
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTs 264 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEE
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEEC
Confidence 2222322 2333332111 1111 1223445555554 799999999999877654 36799999999
Q ss_pred CChhhHHhhCCCCccEEEEc---cCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhhccCCHHH
Q 046314 325 RDKQVLRKHGVNDEYVYEVE---RLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSLHQKSKLD 401 (1137)
Q Consensus 325 R~~~v~~~~~~~~~~~~~v~---~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~~~~~~~ 401 (1137)
|++.++..++ .. .|++. +|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++++. .+
T Consensus 265 R~~~~~~~~~-~~--~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~ 337 (591)
T 1z6t_A 265 RDKSVTDSVM-GP--KYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NR 337 (591)
T ss_dssp SCGGGGTTCC-SC--EEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TC
T ss_pred CCcHHHHhcC-CC--ceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hh
Confidence 9998765543 22 67774 899999999999998642 223346788999999999999999999998764 47
Q ss_pred HHHHHHHHhccCC----------cccHHHHHHHhhccCChhhHhHhhhcccccCCcC--HHHHHHHHhhcCCchhHHHHH
Q 046314 402 WENVLDNLKQISG----------VSRIYNVLRISYEELSFEEKSTFLDIACFFKGEC--KDRVLMLLHDRQYNVTHVLSI 469 (1137)
Q Consensus 402 w~~~l~~l~~~~~----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~~~~~l~~ 469 (1137)
|...++.+..... ...+..++..||+.|++++|.||+++||||.+.. .+.+..+|......+...++.
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~ 417 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQE 417 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHH
Confidence 9999888875431 1468999999999999999999999999998754 467888887766678889999
Q ss_pred HHhccCceee--C--CeEEehHHHHHHHHHhhhcc-------------------CccCCCCccccccccchhhhhhcccc
Q 046314 470 LIDKSLITEH--N--NRLHMHELLQEMGQEIVRQE-------------------DIKEPGKRSRLWHHKDVRHVLKHNEG 526 (1137)
Q Consensus 470 L~~~sLi~~~--~--~~~~mHdll~~~~~~i~~~e-------------------~~~~~~~~~~l~~~~di~~vl~~~~~ 526 (1137)
|+++|||... + .+|.||+++|+++++....+ ....++.+.++|..+.++|++..+..
T Consensus 418 L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~ 497 (591)
T 1z6t_A 418 FVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497 (591)
T ss_dssp HHHTTSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHhCcCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCH
Confidence 9999999865 2 37999999999998873211 01233455667777788888776654
Q ss_pred cceeeceecccc
Q 046314 527 TNAIEGIFLNLA 538 (1137)
Q Consensus 527 ~~~i~~i~ldl~ 538 (1137)
. .+..++.++.
T Consensus 498 ~-~~~~l~~~~~ 508 (591)
T 1z6t_A 498 K-ELCALMFSLD 508 (591)
T ss_dssp H-HHHHHHSCHH
T ss_pred H-HHHHHHhCHH
Confidence 3 3444554443
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=4.1e-30 Score=326.43 Aligned_cols=336 Identities=21% Similarity=0.244 Sum_probs=251.8
Q ss_pred ecCCCCCCCCCCceEEEEecCCCC-CCCCCC-cccccceeecccCCch-hhhhhhhhccccceeEEecCCCC--------
Q 046314 581 QFPDGLDYLPEKLKYLHLHKYPLR-TLPENF-KPKNLIELNLPFSKIV-QIWEEKRYVKAFKLKSINLSHSQ-------- 649 (1137)
Q Consensus 581 ~lp~~l~~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~i~-~l~~~~~~~~l~~L~~L~Ls~n~-------- 649 (1137)
.+|..+....++|++|++++|.+. .+|..+ .+++|++|+|++|.+. .++.. .+..+++|++|+|++|.
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-TLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-HHTTCTTCCEEECCSSEEEECCCTT
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-HHhcCCCCCEEeCcCCccCccccHH
Confidence 455555554346666666666655 444444 5566666666666654 33222 11222345555555544
Q ss_pred -----------------CCCccCC-CCC--CCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCC-CC
Q 046314 650 -----------------YLIRIPD-PSE--TPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLH-FV 708 (1137)
Q Consensus 650 -----------------~~~~~p~-~~~--l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~-l~ 708 (1137)
+...+|. +.. +++|++|++++|...+.+|..++++++|+.|++++|.....+|..+. ++
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC
Confidence 4333332 222 66788888888877778888888899999999998877777777764 88
Q ss_pred CCceEeccCCccCCCCCccc---CCCcEEEecCCCcc-ccCccccCCCCCcEEecccccccccccccccCCCCCcEeccc
Q 046314 709 SPVNIDCSFCVNLTEFPRIS---GNITKLNLCDTAIE-EVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLN 784 (1137)
Q Consensus 709 ~L~~L~ls~c~~l~~~~~~~---~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 784 (1137)
+|+.|++++|.....+|..+ .+|+.|++++|.+. .+|..+..+++|+.|+|++|++.+.+|..++++++|++|+++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 89999999987766777644 47899999999998 678889999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCcceecccCcccc-ccCchhhcccccc-------------------------------------
Q 046314 785 ECLNLEKSWSELGNLKSFQYIGAHGSTIS-QLPHLLSHLVSLH------------------------------------- 826 (1137)
Q Consensus 785 ~~~~~~~~~~~l~~l~~L~~L~l~~n~i~-~lp~~l~~l~~L~------------------------------------- 826 (1137)
+|...+.+|..+..+++|+.|++++|.+. .+|..+..+..+.
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 99998899999999999999999999887 6777654322111
Q ss_pred ----------------------ccccCCCCCCCEEeecCCCCCC-cccccCCCCCCCEEEccCCCCC-cCC-CCCCcccc
Q 046314 827 ----------------------ASLLSGLSSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRGNNFE-SLP-SIPELPPS 881 (1137)
Q Consensus 827 ----------------------~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp-~~~~l~~~ 881 (1137)
...+..+++|+.|+|++|++++ +|..++.+++|+.|+|++|+++ .+| .+..++ +
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~ 681 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-G 681 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-T
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC-C
Confidence 1134567899999999999995 9999999999999999999998 677 788888 9
Q ss_pred cceeccccccccccCCCC---CCCcceeeccccccccccc
Q 046314 882 LKWLQASNCKRLQFLPEI---PSRPEELDASLLQKLSKYS 918 (1137)
Q Consensus 882 L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~~L~~~~ 918 (1137)
|+.|+|++|+....+|.. .++|+.|+++++.--..++
T Consensus 682 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 999999999877777764 3578888888875433443
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.1e-28 Score=308.31 Aligned_cols=325 Identities=15% Similarity=0.108 Sum_probs=196.6
Q ss_pred cCCCCCCCCCCceEEEEecCCCCC------------------CCCCC---cccccceeecccCCch-hhhhhhhhccccc
Q 046314 582 FPDGLDYLPEKLKYLHLHKYPLRT------------------LPENF---KPKNLIELNLPFSKIV-QIWEEKRYVKAFK 639 (1137)
Q Consensus 582 lp~~l~~l~~~L~~L~l~~~~l~~------------------lp~~~---~l~~L~~L~L~~n~i~-~l~~~~~~~~l~~ 639 (1137)
+|..+..++ +|++|++++|.++. +|..+ .+++|++|+|++|++. .++.... .+++
T Consensus 440 IP~~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLPE 516 (876)
T ss_dssp ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCSS
T ss_pred hhHHHhcCC-CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--CCCC
Confidence 666666664 67777777777776 77665 4677777777777644 3333333 3347
Q ss_pred eeEEecCCCC-CCC-ccCC--------CCCCCcccEeeccCCCCccccCc--cccCCCcCceEeccCCcCcccCCCCCCC
Q 046314 640 LKSINLSHSQ-YLI-RIPD--------PSETPSLERINLWNCTNLAWVPS--SIQNFNHLSLLCFQGCKNLRSFPSNLHF 707 (1137)
Q Consensus 640 L~~L~Ls~n~-~~~-~~p~--------~~~l~~L~~L~L~~~~~l~~~p~--~i~~L~~L~~L~L~~c~~l~~lp~~~~l 707 (1137)
|+.|+|++|+ +.. .+|. +..+++|++|+|++|... .+|. .++++++|+.|+|++|... .+|....+
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L 594 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTN 594 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCC
Confidence 7777777776 443 3442 334457777777777555 6676 6777777777777776543 66632246
Q ss_pred CCCceEeccCCccCCCCCcccC---C-CcEEEecCCCccccCccccCCCC--CcEEeccccccccccccc---cc--CCC
Q 046314 708 VSPVNIDCSFCVNLTEFPRISG---N-ITKLNLCDTAIEEVPSSVECLTN--LEYLYINRCKRLKRVSTS---IC--KLK 776 (1137)
Q Consensus 708 ~~L~~L~ls~c~~l~~~~~~~~---~-L~~L~L~~~~i~~lp~~i~~l~~--L~~L~L~~~~~l~~lp~~---l~--~l~ 776 (1137)
++|+.|++++|.. ..+|..+. + |+.|+|++|.+..+|..+..++. |+.|+|++|.+.+.+|.. +. .++
T Consensus 595 ~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCC-SCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCcc-ccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 6777777777553 35554332 4 77777777777777766665543 777777777766654422 22 334
Q ss_pred CCcEecccccccccccccc-cCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccC-
Q 046314 777 SLIWLCLNECLNLEKSWSE-LGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIG- 854 (1137)
Q Consensus 777 ~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~- 854 (1137)
+|+.|+|++|... .+|.. +..+++|+.|++++|.+..+|..+..... ..+.++++|+.|+|++|+++.+|..+.
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~---~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKD---GNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT---SCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcccc---ccccccCCccEEECCCCCCccchHHhhh
Confidence 6777777777655 34443 34677777777777777766664322100 012233466666776666666666665
Q ss_pred -CCCCCCEEEccCCCCCcCC-CCCCcccccceeccccc------cccccCCCC---CCCcceeeccccccccccc
Q 046314 855 -CLPSLEWLELRGNNFESLP-SIPELPPSLKWLQASNC------KRLQFLPEI---PSRPEELDASLLQKLSKYS 918 (1137)
Q Consensus 855 -~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c------~~L~~lp~l---p~~L~~L~~~~c~~L~~~~ 918 (1137)
.+++|+.|+|++|+++.+| .+..++ +|+.|+|++| .....+|.. .++|+.|++++|.- ..++
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 6666777777666666666 555555 6666666553 223334421 24566666666643 4443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.5e-28 Score=302.83 Aligned_cols=356 Identities=18% Similarity=0.135 Sum_probs=242.4
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCC-CC-c
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPE-NF-K 611 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~ 611 (1137)
.+|++......+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++.+++ .+ .
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------------i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ------------IYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCC------------CCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSS
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCc------------cceeChhhccCcc-ccCeeeCCCCcccccChhhhcc
Confidence 56667666667778899999999999998875 2344466677775 89999999999987744 55 8
Q ss_pred ccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCC-ccCCCCCCCcccEeeccCCCCccccCccccCCCcCc--
Q 046314 612 PKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLI-RIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLS-- 688 (1137)
Q Consensus 612 l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~-~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~-- 688 (1137)
+++|++|+|++|.+..+... .+..+++|++|+|++|.+.. ..|.+..+++|++|++++|......|..++.+++|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred cccccEeeccccCcccCCcc-hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 99999999999999987322 23455599999999999876 446777799999999999987777778889999999
Q ss_pred eEeccCCcCcccCCCCCCCCCCceEeccCCc-------------------------------------------------
Q 046314 689 LLCFQGCKNLRSFPSNLHFVSPVNIDCSFCV------------------------------------------------- 719 (1137)
Q Consensus 689 ~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~------------------------------------------------- 719 (1137)
.|++++|......|..+...+|+.|++++|.
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 8899998766666655555555555555543
Q ss_pred --cCCCCCc----ccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccc
Q 046314 720 --NLTEFPR----ISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSW 793 (1137)
Q Consensus 720 --~l~~~~~----~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 793 (1137)
.+..++. ...+|++|++++|.+..+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.....++
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred cCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 1122221 1235677777777777777767777777777777776666666666677777777777766554444
Q ss_pred c-ccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC-cccccCCCCCCCEEEccCCCCCc
Q 046314 794 S-ELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 794 ~-~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
. .+..+++|+.|++++|.+..++.. ...+.++++|++|++++|.+.. .|..+..+++|+.|+|++|.++.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCC--------NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEES--------TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred hhhhhccCcCCEEECCCCccccccCc--------chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 3 366677777777777766654210 0124456666666666666665 34556666666666666666654
Q ss_pred CC---CCCCcccccceeccccccccccCCCC---CCCcceeeccccc
Q 046314 872 LP---SIPELPPSLKWLQASNCKRLQFLPEI---PSRPEELDASLLQ 912 (1137)
Q Consensus 872 lp---~~~~l~~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~ 912 (1137)
.+ .+..++ +|+.|++++|..-...|.. .++|+.|++++|.
T Consensus 415 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 415 KDAQSPFQNLH-LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CTTCCTTTTCT-TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred cccchhhhCcc-cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 42 245555 6666666666543333332 3466666666653
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.4e-28 Score=305.07 Aligned_cols=208 Identities=19% Similarity=0.160 Sum_probs=125.7
Q ss_pred CCCCceEeccCCccCCCCCcc-cCCCcEEEecCCCccccCccccCCCCCcEEeccccccccc--ccccccCCCCCcEecc
Q 046314 707 FVSPVNIDCSFCVNLTEFPRI-SGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKR--VSTSICKLKSLIWLCL 783 (1137)
Q Consensus 707 l~~L~~L~ls~c~~l~~~~~~-~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~L 783 (1137)
+.+|+.|++++|.. +.+|.. ..+|+.|++++|....- ..+..+++|++|++++|.+.+. .|..+..+++|++|++
T Consensus 306 ~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 306 HFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp TCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred cccCCEEEcccccC-cccccCCCCccceeeccCCcCccc-hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence 45566666666544 444432 23455555555522211 1344555555555555554433 2444555555555555
Q ss_pred cccccccccccccCCCCCcceecccCccccccCc--hhhcccccccc-------------ccCCCCCCCEEeecCCCCCC
Q 046314 784 NECLNLEKSWSELGNLKSFQYIGAHGSTISQLPH--LLSHLVSLHAS-------------LLSGLSSLNWLNLNNCALTA 848 (1137)
Q Consensus 784 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~--~l~~l~~L~~~-------------~l~~l~~L~~L~Ls~n~l~~ 848 (1137)
++|... .+|..+..+++|+.|++++|.+..++. .+..+++|+.+ .+.++++|++|++++|.+++
T Consensus 384 ~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 555422 234445555555555555555544332 33333333222 25567899999999998886
Q ss_pred --cccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceeccccccccccCCCC---CCCcceeecccccccccccc
Q 046314 849 --IPEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCKRLQFLPEI---PSRPEELDASLLQKLSKYSY 919 (1137)
Q Consensus 849 --lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~~L~~~~~ 919 (1137)
+|..+..+++|+.|+|++|+++.++ .+..++ +|+.|++++|+.....|.. .++|+.|++++|. ++.++.
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccc-cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence 6888889999999999999988775 577777 9999999988655544542 3578899998885 666554
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3e-29 Score=318.47 Aligned_cols=345 Identities=21% Similarity=0.232 Sum_probs=262.9
Q ss_pred ccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCC-CCCCCCCceEEEEecCCCC-CCCCCC-ccc-ccceeec
Q 046314 545 LDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDG-LDYLPEKLKYLHLHKYPLR-TLPENF-KPK-NLIELNL 620 (1137)
Q Consensus 545 l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~-l~~l~~~L~~L~l~~~~l~-~lp~~~-~l~-~L~~L~L 620 (1137)
..+..|.++++|+.|++++|. ....+|.. +..++ +|++|++++|.+. .+|..+ .+. +|++|+|
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~------------l~~~ip~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNN------------FSGELPMDTLLKMR-GLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSE------------EEEECCHHHHTTCT-TCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred ccchHHhcCCCccEEECCCCc------------ccCcCCHHHHhcCC-CCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 344567778888888887653 22356654 45553 7888888888877 777776 555 8888888
Q ss_pred ccCCchhh-hhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCc
Q 046314 621 PFSKIVQI-WEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNL 698 (1137)
Q Consensus 621 ~~n~i~~l-~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l 698 (1137)
++|++... +.......+++|+.|+|++|.+...+|. +..+++|++|+|++|...+.+|..++.+++|+.|++++|...
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 88887642 2333332244788888888887766665 678888888888888777788888888888888888888777
Q ss_pred ccCCCCCC-CCCCceEeccCCccCCCCCccc---CCCcEEEecCCCcc-ccCccccCCCCCcEEeccccccccccccccc
Q 046314 699 RSFPSNLH-FVSPVNIDCSFCVNLTEFPRIS---GNITKLNLCDTAIE-EVPSSVECLTNLEYLYINRCKRLKRVSTSIC 773 (1137)
Q Consensus 699 ~~lp~~~~-l~~L~~L~ls~c~~l~~~~~~~---~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~ 773 (1137)
..+|..+. +++|+.|++++|.....+|..+ .+|+.|++++|.+. .+|..++.+++|++|+|++|.+.+.+|..++
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 77777664 7888888888887666666543 46788888888887 6777888888888888888888888888888
Q ss_pred CCCCCcEeccccccccccccc-----------------------------------------------------------
Q 046314 774 KLKSLIWLCLNECLNLEKSWS----------------------------------------------------------- 794 (1137)
Q Consensus 774 ~l~~L~~L~L~~~~~~~~~~~----------------------------------------------------------- 794 (1137)
++++|+.|++++|...+.+|.
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 888888888888876654443
Q ss_pred -----------ccCCCCCcceecccCcccc-ccCchhhccccccccccCCCCCCCEEeecCCCCCC-cccccCCCCCCCE
Q 046314 795 -----------ELGNLKSFQYIGAHGSTIS-QLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-IPEEIGCLPSLEW 861 (1137)
Q Consensus 795 -----------~l~~l~~L~~L~l~~n~i~-~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~ 861 (1137)
.+..+++|+.|++++|.++ .+|..+ +++++|+.|+|++|.+++ +|..++.+++|+.
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l-----------~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-----------GSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG-----------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHHH-----------hccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 3445677888888888887 566654 457899999999999995 9999999999999
Q ss_pred EEccCCCCC-cCC-CCCCcccccceeccccccccccCCCC--CCCcceeeccccccc
Q 046314 862 LELRGNNFE-SLP-SIPELPPSLKWLQASNCKRLQFLPEI--PSRPEELDASLLQKL 914 (1137)
Q Consensus 862 L~Ls~n~l~-~lp-~~~~l~~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c~~L 914 (1137)
|+|++|+++ .+| .+..++ +|+.|++++|+....+|+. +.++..+...+++.|
T Consensus 685 LdLs~N~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALT-MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EECCSSCCEECCCGGGGGCC-CCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred EECCCCcccCcCChHHhCCC-CCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 999999999 667 778888 9999999999887788864 334444445555544
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.9e-28 Score=303.88 Aligned_cols=349 Identities=15% Similarity=0.129 Sum_probs=276.2
Q ss_pred ccccCCCCCCcEEEEecCCCCCc--c--ccccC-CCCceecCCCCC--CCCCCceEEEEecCCCC-CCCCCC-cccccce
Q 046314 547 SRAFTNMSSLRVLKFYIPEGLDM--S--FEEQH-SDSKVQFPDGLD--YLPEKLKYLHLHKYPLR-TLPENF-KPKNLIE 617 (1137)
Q Consensus 547 ~~~f~~l~~Lr~L~l~~~~~~~l--~--~~~~~-~~~~~~lp~~l~--~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L~~ 617 (1137)
+..|.++++|++|++++|..... + |.... ......+|..+. .++ +|++|++++|.+. .+|..+ ++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC-CCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 35689999999999998862110 0 00000 000001888888 885 8999999999865 788877 8999999
Q ss_pred eecccCC-chh--hhhhhhhc----cccceeEEecCCCCCCCccCC---CCCCCcccEeeccCCCCccccCccccCCCcC
Q 046314 618 LNLPFSK-IVQ--IWEEKRYV----KAFKLKSINLSHSQYLIRIPD---PSETPSLERINLWNCTNLAWVPSSIQNFNHL 687 (1137)
Q Consensus 618 L~L~~n~-i~~--l~~~~~~~----~l~~L~~L~Ls~n~~~~~~p~---~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L 687 (1137)
|+|++|+ ++. ++.....+ .+++|+.|+|++|.+. .+|. ++.+++|++|++++|...+.+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999998 875 66665543 2349999999999987 7776 7999999999999998887899 99999999
Q ss_pred ceEeccCCcCcccCCCCCC-CCC-CceEeccCCccCCCCCcccC-----CCcEEEecCCCccc-cCcccc-------CCC
Q 046314 688 SLLCFQGCKNLRSFPSNLH-FVS-PVNIDCSFCVNLTEFPRISG-----NITKLNLCDTAIEE-VPSSVE-------CLT 752 (1137)
Q Consensus 688 ~~L~L~~c~~l~~lp~~~~-l~~-L~~L~ls~c~~l~~~~~~~~-----~L~~L~L~~~~i~~-lp~~i~-------~l~ 752 (1137)
+.|++++|.. ..+|..+. +.+ |+.|++++|. ++.+|..+. +|+.|++++|.+.. +|..+. .++
T Consensus 356 ~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSEE-EECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCcc-ccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 9999999864 48888775 778 9999999976 457887543 68999999999975 466677 788
Q ss_pred CCcEEeccccccccccccc-ccCCCCCcEecccccccccccccccC--------CCCCcceecccCccccccCchhhccc
Q 046314 753 NLEYLYINRCKRLKRVSTS-ICKLKSLIWLCLNECLNLEKSWSELG--------NLKSFQYIGAHGSTISQLPHLLSHLV 823 (1137)
Q Consensus 753 ~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~~l~--------~l~~L~~L~l~~n~i~~lp~~l~~l~ 823 (1137)
+|++|+|++|.+. .+|.. +..+++|++|+|++|... .+|.... ++++|+.|++++|.++.+|..+.
T Consensus 434 ~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~--- 508 (636)
T 4eco_A 434 NVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR--- 508 (636)
T ss_dssp CEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS---
T ss_pred CCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhh---
Confidence 9999999999887 45544 566999999999999877 5554432 23399999999999998887542
Q ss_pred cccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccC------CCCC-cCC-CCCCcccccceecccccccccc
Q 046314 824 SLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRG------NNFE-SLP-SIPELPPSLKWLQASNCKRLQF 895 (1137)
Q Consensus 824 ~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~------n~l~-~lp-~~~~l~~~L~~L~l~~c~~L~~ 895 (1137)
...+++|+.|+|++|.++.+|..+..+++|+.|+|++ |++. .+| .+..++ +|+.|+|++|.. ..
T Consensus 509 ------~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l-~~ 580 (636)
T 4eco_A 509 ------ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP-SLTQLQIGSNDI-RK 580 (636)
T ss_dssp ------TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC-CB
T ss_pred ------hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC-CCCEEECCCCcC-Cc
Confidence 1368999999999999999999999999999999954 5544 567 777777 999999999876 77
Q ss_pred CCC-CCCCcceeecccccc
Q 046314 896 LPE-IPSRPEELDASLLQK 913 (1137)
Q Consensus 896 lp~-lp~~L~~L~~~~c~~ 913 (1137)
+|. ++++|+.|++++++-
T Consensus 581 ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 581 VNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp CCSCCCTTCCEEECCSCTT
T ss_pred cCHhHhCcCCEEECcCCCC
Confidence 776 678999999999853
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.8e-28 Score=307.16 Aligned_cols=348 Identities=15% Similarity=0.119 Sum_probs=275.8
Q ss_pred ccccCCCCCCcEEEEecCCCCCc--ccccc---CCCCceecCCCCC--CCCCCceEEEEecCCCC-CCCCCC-cccccce
Q 046314 547 SRAFTNMSSLRVLKFYIPEGLDM--SFEEQ---HSDSKVQFPDGLD--YLPEKLKYLHLHKYPLR-TLPENF-KPKNLIE 617 (1137)
Q Consensus 547 ~~~f~~l~~Lr~L~l~~~~~~~l--~~~~~---~~~~~~~lp~~l~--~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L~~ 617 (1137)
+..|.++++|++|++++|..... +.... .+.....+|..+. .++ +|++|++++|.+. .+|..+ ++++|++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 35699999999999998863110 00000 0000013888887 775 8999999999854 788777 8999999
Q ss_pred eecccCC-chh--hhhhhhh-----ccccceeEEecCCCCCCCccCC---CCCCCcccEeeccCCCCccccCccccCCCc
Q 046314 618 LNLPFSK-IVQ--IWEEKRY-----VKAFKLKSINLSHSQYLIRIPD---PSETPSLERINLWNCTNLAWVPSSIQNFNH 686 (1137)
Q Consensus 618 L~L~~n~-i~~--l~~~~~~-----~~l~~L~~L~Ls~n~~~~~~p~---~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~ 686 (1137)
|+|++|+ ++. +|..... ..+++|+.|+|++|.+. .+|. +..+++|++|+|++|... .+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 775 6554432 23459999999999987 7776 799999999999999766 888 8999999
Q ss_pred CceEeccCCcCcccCCCCCC-CCC-CceEeccCCccCCCCCcccC-----CCcEEEecCCCccccCc----ccc--CCCC
Q 046314 687 LSLLCFQGCKNLRSFPSNLH-FVS-PVNIDCSFCVNLTEFPRISG-----NITKLNLCDTAIEEVPS----SVE--CLTN 753 (1137)
Q Consensus 687 L~~L~L~~c~~l~~lp~~~~-l~~-L~~L~ls~c~~l~~~~~~~~-----~L~~L~L~~~~i~~lp~----~i~--~l~~ 753 (1137)
|+.|+|++|... .+|..+. +.+ |+.|++++|. +..+|..+. +|+.|+|++|.+...++ .+. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999998755 8888775 778 9999999986 558887544 38999999999975433 333 4469
Q ss_pred CcEEecccccccccccccc-cCCCCCcEecccccccccccccccCC--------CCCcceecccCccccccCchhhcccc
Q 046314 754 LEYLYINRCKRLKRVSTSI-CKLKSLIWLCLNECLNLEKSWSELGN--------LKSFQYIGAHGSTISQLPHLLSHLVS 824 (1137)
Q Consensus 754 L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~~~~~~~~~~~l~~--------l~~L~~L~l~~n~i~~lp~~l~~l~~ 824 (1137)
|+.|+|++|.+. .+|..+ ..+++|+.|+|++|... .+|..+.. +++|+.|++++|.+..+|..+.
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~---- 748 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR---- 748 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS----
T ss_pred cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhh----
Confidence 999999999987 556554 58999999999999766 56654333 3499999999999999987542
Q ss_pred ccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccC------CCCC-cCC-CCCCcccccceeccccccccccC
Q 046314 825 LHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRG------NNFE-SLP-SIPELPPSLKWLQASNCKRLQFL 896 (1137)
Q Consensus 825 L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~------n~l~-~lp-~~~~l~~~L~~L~l~~c~~L~~l 896 (1137)
...+++|+.|+|++|.++.+|..+..+++|+.|+|++ |++. .+| .+..++ +|+.|+|++|.. ..+
T Consensus 749 -----~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~-~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 749 -----ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP-SLIQLQIGSNDI-RKV 821 (876)
T ss_dssp -----TTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC-CBC
T ss_pred -----hccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC-CCCEEECCCCCC-Ccc
Confidence 1368999999999999999999999999999999987 5544 566 777888 999999999976 888
Q ss_pred CC-CCCCcceeecccccc
Q 046314 897 PE-IPSRPEELDASLLQK 913 (1137)
Q Consensus 897 p~-lp~~L~~L~~~~c~~ 913 (1137)
|. ++++|+.|++++|+-
T Consensus 822 p~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 822 DEKLTPQLYILDIADNPN 839 (876)
T ss_dssp CSCCCSSSCEEECCSCTT
T ss_pred CHhhcCCCCEEECCCCCC
Confidence 86 678999999999974
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.4e-28 Score=305.07 Aligned_cols=313 Identities=16% Similarity=0.179 Sum_probs=264.1
Q ss_pred cccC--CCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCC-CC--CCCCCC-cc------ccc
Q 046314 548 RAFT--NMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYP-LR--TLPENF-KP------KNL 615 (1137)
Q Consensus 548 ~~f~--~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~-l~--~lp~~~-~l------~~L 615 (1137)
..+. ++++|++|++++|. ....+|..+..++ +|++|++++|. ++ .+|..+ .+ ++|
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~------------l~~~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCP------------NLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCT------------TCSSCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred hhhhhcccCCCCEEEecCCc------------CCccChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence 4455 89999999999875 4567888888886 89999999998 88 488776 44 999
Q ss_pred ceeecccCCchhhhh--hhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCc-CceEec
Q 046314 616 IELNLPFSKIVQIWE--EKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNH-LSLLCF 692 (1137)
Q Consensus 616 ~~L~L~~n~i~~l~~--~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~-L~~L~L 692 (1137)
++|+|++|+++.++. .... +++|+.|+|++|.+...+|.+..+++|++|+|++|... .+|..+..+++ |+.|++
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF 384 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred CEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence 999999999998876 4444 44999999999998868888899999999999999655 88999999999 999999
Q ss_pred cCCcCcccCCCCCC---CCCCceEeccCCccCCCCCcccC----------CCcEEEecCCCccccCccc-cCCCCCcEEe
Q 046314 693 QGCKNLRSFPSNLH---FVSPVNIDCSFCVNLTEFPRISG----------NITKLNLCDTAIEEVPSSV-ECLTNLEYLY 758 (1137)
Q Consensus 693 ~~c~~l~~lp~~~~---l~~L~~L~ls~c~~l~~~~~~~~----------~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~ 758 (1137)
++|.. ..+|..+. +.+|+.|++++|......|..+. +|+.|++++|.+..+|..+ ..+++|++|+
T Consensus 385 s~N~l-~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 385 AHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463 (636)
T ss_dssp CSSCC-SSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEE
T ss_pred cCCcC-cccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEE
Confidence 99874 48998765 34799999999887766665444 7899999999999999875 4699999999
Q ss_pred ccccccccccccccc-C-------CCCCcEecccccccccccccccC--CCCCcceecccCccccccCchhhcccccccc
Q 046314 759 INRCKRLKRVSTSIC-K-------LKSLIWLCLNECLNLEKSWSELG--NLKSFQYIGAHGSTISQLPHLLSHLVSLHAS 828 (1137)
Q Consensus 759 L~~~~~l~~lp~~l~-~-------l~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~ 828 (1137)
|++|.+. .+|..+. . +++|+.|+|++|... .+|..+. .+++|+.|++++|.++.+|..+.
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-------- 533 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-------- 533 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG--------
T ss_pred CCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhh--------
Confidence 9999987 5665433 2 339999999999877 7888887 99999999999999999987653
Q ss_pred ccCCCCCCCEEeec------CCCCCC-cccccCCCCCCCEEEccCCCCCcCC-CCCCcccccceecccccccc
Q 046314 829 LLSGLSSLNWLNLN------NCALTA-IPEEIGCLPSLEWLELRGNNFESLP-SIPELPPSLKWLQASNCKRL 893 (1137)
Q Consensus 829 ~l~~l~~L~~L~Ls------~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c~~L 893 (1137)
.+++|+.|+|+ +|.+.. +|..+..+++|++|+|++|++..+| .+. ++|+.|++++|+..
T Consensus 534 ---~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 534 ---NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNI 600 (636)
T ss_dssp ---GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTC
T ss_pred ---cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCc
Confidence 47889999995 465554 8999999999999999999999999 443 49999999999744
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.4e-28 Score=301.28 Aligned_cols=353 Identities=18% Similarity=0.186 Sum_probs=238.7
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCC-C-c
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPEN-F-K 611 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~ 611 (1137)
.+|++.+....+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++.+|+. + .
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------------i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSR------------INTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSC------------CCEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTT
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCC------------cCccChhhccccc-cCCEEECCCCccCccCHHHhcc
Confidence 44555555555667789999999999998775 2233345566664 899999999999988875 4 7
Q ss_pred ccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccC--CCCCCCcccEeeccCCCCccccCccccCCCcCce
Q 046314 612 PKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIP--DPSETPSLERINLWNCTNLAWVPSSIQNFNHLSL 689 (1137)
Q Consensus 612 l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p--~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~ 689 (1137)
+++|++|+|++|.+..+.....+..+++|++|++++|.....+| .+..+++|++|++++|......|..++.+++|+.
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 88999999999998865332234445589999999998666665 3788999999999998877777777776665555
Q ss_pred EeccCCc------------------------CcccC--CCCC--CCCCCceE----------------------------
Q 046314 690 LCFQGCK------------------------NLRSF--PSNL--HFVSPVNI---------------------------- 713 (1137)
Q Consensus 690 L~L~~c~------------------------~l~~l--p~~~--~l~~L~~L---------------------------- 713 (1137)
|++++|. ..... |..+ .+.+|+.|
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 5554432 21100 0000 12223333
Q ss_pred eccCCccCC--CC------------------------------------CcccCCCcEEEecCCCccccCccc-cCCCCC
Q 046314 714 DCSFCVNLT--EF------------------------------------PRISGNITKLNLCDTAIEEVPSSV-ECLTNL 754 (1137)
Q Consensus 714 ~ls~c~~l~--~~------------------------------------~~~~~~L~~L~L~~~~i~~lp~~i-~~l~~L 754 (1137)
++++|.... .+ ....++++.|++++|.+..+|..+ ..+++|
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L 336 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTC
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccc
Confidence 332222100 00 011246777788888888888776 468888
Q ss_pred cEEeccccccccccc---ccccCCCCCcEecccccccccccc--cccCCCCCcceecccCccccccCchhhccccccccc
Q 046314 755 EYLYINRCKRLKRVS---TSICKLKSLIWLCLNECLNLEKSW--SELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASL 829 (1137)
Q Consensus 755 ~~L~L~~~~~l~~lp---~~l~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~ 829 (1137)
++|++++|.+.+..| ..++.+++|++|++++|......+ ..+..+++|+.|++++|.++.+|..+
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~---------- 406 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC---------- 406 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCC----------
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhh----------
Confidence 888888888777654 336778888888888887654322 45778888888888888888877643
Q ss_pred cCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCCCCCCcccccceeccccccccccCCCC--CCCcceee
Q 046314 830 LSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASNCKRLQFLPEI--PSRPEELD 907 (1137)
Q Consensus 830 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~c~~L~~lp~l--p~~L~~L~ 907 (1137)
..+++|++|++++|.++.+|..+ .++|+.|+|++|+++.++ ..++ +|+.|++++| .++.+|.. .++|+.|+
T Consensus 407 -~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~--~~l~-~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~ 479 (549)
T 2z81_A 407 -QWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS--LFLP-RLQELYISRN-KLKTLPDASLFPVLLVMK 479 (549)
T ss_dssp -CCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC--CCCT-TCCEEECCSS-CCSSCCCGGGCTTCCEEE
T ss_pred -cccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc--ccCC-hhcEEECCCC-ccCcCCCcccCccCCEEe
Confidence 44677788888888777776544 357788888888777654 3455 8888888887 45566653 46788888
Q ss_pred cccccccccc
Q 046314 908 ASLLQKLSKY 917 (1137)
Q Consensus 908 ~~~c~~L~~~ 917 (1137)
++++ .++.+
T Consensus 480 Ls~N-~l~~~ 488 (549)
T 2z81_A 480 ISRN-QLKSV 488 (549)
T ss_dssp CCSS-CCCCC
T ss_pred cCCC-ccCCc
Confidence 8876 44443
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.1e-27 Score=292.96 Aligned_cols=322 Identities=19% Similarity=0.157 Sum_probs=181.7
Q ss_pred CCCCCCCCceEEEEecCCCCCC--CCCCcccccceeecccCCchhhhhhhhhcccccee--EEecCCCCCCCccCCCCCC
Q 046314 585 GLDYLPEKLKYLHLHKYPLRTL--PENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLK--SINLSHSQYLIRIPDPSET 660 (1137)
Q Consensus 585 ~l~~l~~~L~~L~l~~~~l~~l--p~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~--~L~Ls~n~~~~~~p~~~~l 660 (1137)
.+..+ ++|++|++++|.+..+ |..+.+++|++|++++|.+..+.... +..+++|+ .|++++|.+....|.....
T Consensus 124 ~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~ 201 (606)
T 3t6q_A 124 PLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS 201 (606)
T ss_dssp CCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTTT
T ss_pred hhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHhhh
Confidence 34444 3677777777777765 44446777777777777776553221 12222555 5555555544433332111
Q ss_pred C----------------------------------------------------cccEeeccCCCCccccCccccCCCcCc
Q 046314 661 P----------------------------------------------------SLERINLWNCTNLAWVPSSIQNFNHLS 688 (1137)
Q Consensus 661 ~----------------------------------------------------~L~~L~L~~~~~l~~~p~~i~~L~~L~ 688 (1137)
. +|+.|++++|......+..++.+++|+
T Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 281 (606)
T 3t6q_A 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281 (606)
T ss_dssp CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence 1 334444444433333333455555666
Q ss_pred eEeccCCcCcccCCCCCC-CCCCceEeccCCccCCCCCc---ccCCCcEEEecCCCcc-ccCcc-ccCCCCCcEEecccc
Q 046314 689 LLCFQGCKNLRSFPSNLH-FVSPVNIDCSFCVNLTEFPR---ISGNITKLNLCDTAIE-EVPSS-VECLTNLEYLYINRC 762 (1137)
Q Consensus 689 ~L~L~~c~~l~~lp~~~~-l~~L~~L~ls~c~~l~~~~~---~~~~L~~L~L~~~~i~-~lp~~-i~~l~~L~~L~L~~~ 762 (1137)
.|++++|. +..+|..+. +++|+.|++++|......|. ...+|++|++++|.+. .+|.. +..+++|++|++++|
T Consensus 282 ~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 282 ELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp EEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred EEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 66665543 345555442 55556666555432222221 2234555555555544 34333 555555555555555
Q ss_pred cccccc--cccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccC--chhhcccccccc----------
Q 046314 763 KRLKRV--STSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLP--HLLSHLVSLHAS---------- 828 (1137)
Q Consensus 763 ~~l~~l--p~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp--~~l~~l~~L~~~---------- 828 (1137)
.+.+.. +..+.++++|++|++++|......|..+..+++|+.|++++|.+...+ ..+..+++|+.+
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 440 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence 544433 444555555555555555544444555555555555555555554321 113333333222
Q ss_pred ---ccCCCCCCCEEeecCCCCCC--c--ccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceeccccccccccCCCC
Q 046314 829 ---LLSGLSSLNWLNLNNCALTA--I--PEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCKRLQFLPEI 899 (1137)
Q Consensus 829 ---~l~~l~~L~~L~Ls~n~l~~--l--p~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~~L~~lp~l 899 (1137)
.+.++++|++|+|++|.+++ + +..+..+++|+.|+|++|+++.++ .+..++ +|+.|++++|+.....|+.
T Consensus 441 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK-MMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCGGGGGG
T ss_pred CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc-CCCEEECCCCccCcCChhH
Confidence 25568899999999998876 2 356888999999999999998875 677777 9999999998755555543
Q ss_pred C---CCcceeecccc
Q 046314 900 P---SRPEELDASLL 911 (1137)
Q Consensus 900 p---~~L~~L~~~~c 911 (1137)
. ++| .|+++++
T Consensus 520 l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 520 LSHLKGI-YLNLASN 533 (606)
T ss_dssp GTTCCSC-EEECCSS
T ss_pred hCccccc-EEECcCC
Confidence 3 355 7777776
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.9e-27 Score=294.84 Aligned_cols=228 Identities=17% Similarity=0.192 Sum_probs=148.4
Q ss_pred cccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCc-ccCCCcEEEecCCCcccc---CccccCCCCCc
Q 046314 680 SIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPR-ISGNITKLNLCDTAIEEV---PSSVECLTNLE 755 (1137)
Q Consensus 680 ~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~-~~~~L~~L~L~~~~i~~l---p~~i~~l~~L~ 755 (1137)
.+..+++|+.|++++|.. +.+|.. .+++|+.|++++|..+..++. ...+|++|++++|.+..+ |..+..+++|+
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence 466667788888888766 777754 777777777777754443321 233556666666655544 44455555555
Q ss_pred EEecccccccccccccccCCCCCcEecccccccccccc-cccCCCCCcceecccCccccc-cCchhhcccccccc-----
Q 046314 756 YLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSW-SELGNLKSFQYIGAHGSTISQ-LPHLLSHLVSLHAS----- 828 (1137)
Q Consensus 756 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l~~n~i~~-lp~~l~~l~~L~~~----- 828 (1137)
+|++++|.+.+ +|..+..+++|+.|++++|......+ ..+..+++|+.|++++|.+.. .|..+..+++|+.+
T Consensus 380 ~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 55555555332 34455555555555555555444444 345555555555555555543 23333333333221
Q ss_pred ---------ccCCCCCCCEEeecCCCCCCc-ccccCCCCCCCEEEccCCCCCcC-C-CCCCcccccceeccccccccccC
Q 046314 829 ---------LLSGLSSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRGNNFESL-P-SIPELPPSLKWLQASNCKRLQFL 896 (1137)
Q Consensus 829 ---------~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p-~~~~l~~~L~~L~l~~c~~L~~l 896 (1137)
.+.++++|+.|+|++|.++++ |..+..+++|++|+|++|+++.+ | .+..++ +|+.|++++|+ ++.+
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~-l~~~ 536 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTLDCSFNR-IETS 536 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT-TCCEEECTTSC-CCCE
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC-cCCEEECCCCc-Cccc
Confidence 356789999999999999984 67799999999999999999987 4 788888 99999999986 6666
Q ss_pred CC----CCCCcceeeccccc
Q 046314 897 PE----IPSRPEELDASLLQ 912 (1137)
Q Consensus 897 p~----lp~~L~~L~~~~c~ 912 (1137)
|. +|.+|+.|++++++
T Consensus 537 p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 537 KGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ESCGGGSCTTCCEEECCSCC
T ss_pred CHhHhhhcccCcEEEccCCC
Confidence 64 34578888887754
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=8.2e-28 Score=292.26 Aligned_cols=344 Identities=19% Similarity=0.134 Sum_probs=217.7
Q ss_pred ccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccc
Q 046314 535 LNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKN 614 (1137)
Q Consensus 535 ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~ 614 (1137)
+|++.+....+.+.+|.++++|++|++++|.. ....|..+..++ +|++|++++|.++.+|.. .+.+
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~ 91 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRI------------QYLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVN 91 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCC------------CEEEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCC
T ss_pred EECCCCcccccChhhccccccccEEecCCCcc------------CCcChHHhhccc-CCCEEecCCCceeecCcc-ccCC
Confidence 34444444445556667777777777766541 222244444443 666666666666666666 6666
Q ss_pred cceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcc--cEeeccCCCC--ccccCccccC-------
Q 046314 615 LIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSL--ERINLWNCTN--LAWVPSSIQN------- 683 (1137)
Q Consensus 615 L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L--~~L~L~~~~~--l~~~p~~i~~------- 683 (1137)
|++|+|++|.+..+.....+..+++|++|+|++|.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~ 169 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEE
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEE
Confidence 66666666666653221222233366666666665433 223444444 5555555544 3333333322
Q ss_pred -------------------CCcC---------------------------------------------------------
Q 046314 684 -------------------FNHL--------------------------------------------------------- 687 (1137)
Q Consensus 684 -------------------L~~L--------------------------------------------------------- 687 (1137)
+++|
T Consensus 170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L 249 (520)
T 2z7x_B 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249 (520)
T ss_dssp EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence 2333
Q ss_pred ceEeccCCcCcccCCCCC------CCCCCceEeccCCccCCCCCc-cc------CCCcEEEecCCCccccCccccCCCCC
Q 046314 688 SLLCFQGCKNLRSFPSNL------HFVSPVNIDCSFCVNLTEFPR-IS------GNITKLNLCDTAIEEVPSSVECLTNL 754 (1137)
Q Consensus 688 ~~L~L~~c~~l~~lp~~~------~l~~L~~L~ls~c~~l~~~~~-~~------~~L~~L~L~~~~i~~lp~~i~~l~~L 754 (1137)
+.|++++|...+.+|..+ .+..|+.++++++.. .+|. .. .+++.|++++|.+..++. ...+++|
T Consensus 250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L 326 (520)
T 2z7x_B 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPF 326 (520)
T ss_dssp SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCC
T ss_pred cEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcc
Confidence 333333333222344332 134444444444332 3331 00 346777777777665542 2678999
Q ss_pred cEEecccccccccccccccCCCCCcEeccccccccc--ccccccCCCCCcceecccCccccc-cCchhhccccccccccC
Q 046314 755 EYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLE--KSWSELGNLKSFQYIGAHGSTISQ-LPHLLSHLVSLHASLLS 831 (1137)
Q Consensus 755 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~~n~i~~-lp~~l~~l~~L~~~~l~ 831 (1137)
++|++++|.+.+..|..+.++++|++|++++|.... .+|..+..+++|+.|++++|.+.. +|... +.
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~----------~~ 396 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD----------CS 396 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS----------CC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch----------hc
Confidence 999999999988889999999999999999998775 567789999999999999999987 77532 56
Q ss_pred CCCCCCEEeecCCCCCC-cccccCCCCCCCEEEccCCCCCcCC-CCCCcccccceeccccccccccCCCC----CCCcce
Q 046314 832 GLSSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRGNNFESLP-SIPELPPSLKWLQASNCKRLQFLPEI----PSRPEE 905 (1137)
Q Consensus 832 ~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c~~L~~lp~l----p~~L~~ 905 (1137)
.+++|++|++++|.+++ +|..+. ++|+.|+|++|+++.+| .+..++ +|+.|++++|+ ++.+|.. .++|+.
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~-~L~~L~L~~N~-l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLE-ALQELNVASNQ-LKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCT-TCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCC-CCCEEECCCCc-CCccCHHHhccCCcccE
Confidence 78999999999999976 665553 79999999999999999 567777 99999999984 5566642 134555
Q ss_pred eecccc
Q 046314 906 LDASLL 911 (1137)
Q Consensus 906 L~~~~c 911 (1137)
|+++++
T Consensus 473 L~l~~N 478 (520)
T 2z7x_B 473 IWLHTN 478 (520)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 555443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=3.9e-27 Score=281.27 Aligned_cols=336 Identities=15% Similarity=0.126 Sum_probs=231.1
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecC-CCCCCCCCCceEEEEecCCCCCC-CCCC-
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFP-DGLDYLPEKLKYLHLHKYPLRTL-PENF- 610 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp-~~l~~l~~~L~~L~l~~~~l~~l-p~~~- 610 (1137)
.+|++......+.+..|.++++|++|++++|. ....++ ..+..+ ++|++|++++|.++.+ |..+
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~------------~~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQT------------PGLVIRNNTFRGL-SSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCS------------TTCEECTTTTTTC-TTCCEEECTTCTTCEECTTTTT
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCc------------ccceECccccccc-ccCCEEeCCCCccCccChhhcc
Confidence 34555555555666778888888888887664 222343 344555 4788888888888766 4445
Q ss_pred cccccceeecccCCchhh-hhhhhhccccceeEEecCCCCCCCccCC--CCCCCcccEeeccCCCCccccCccccCC--C
Q 046314 611 KPKNLIELNLPFSKIVQI-WEEKRYVKAFKLKSINLSHSQYLIRIPD--PSETPSLERINLWNCTNLAWVPSSIQNF--N 685 (1137)
Q Consensus 611 ~l~~L~~L~L~~n~i~~l-~~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~~~l~~L~~L~L~~~~~l~~~p~~i~~L--~ 685 (1137)
.+++|++|+|++|++... +....+..+++|++|+|++|.+....|. +..+++|++|++++|......+..+..+ .
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 678888888888887753 3332233455888888888887766665 6778888888888887777667777666 6
Q ss_pred cCceEeccCCcCcccCCCC---------CCCCCCceEeccCCccCCCCCccc------CCCcEEEecCCCccccCc----
Q 046314 686 HLSLLCFQGCKNLRSFPSN---------LHFVSPVNIDCSFCVNLTEFPRIS------GNITKLNLCDTAIEEVPS---- 746 (1137)
Q Consensus 686 ~L~~L~L~~c~~l~~lp~~---------~~l~~L~~L~ls~c~~l~~~~~~~------~~L~~L~L~~~~i~~lp~---- 746 (1137)
+|+.|++++|.....-+.. ..+++|+.|++++|......|..+ .+++.|++++|.+.....
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 7888888776543322111 134667788887775443333221 467777777764332110
Q ss_pred -------ccc--CCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCc
Q 046314 747 -------SVE--CLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPH 817 (1137)
Q Consensus 747 -------~i~--~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~ 817 (1137)
.+. ..++|+.|++++|.+.+..|..+..+++|++|++++|......|..+.++++|+.|++++|.+..++.
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 111 23578888888888887778888888888888888888777777778888888888888888876644
Q ss_pred hhhccccccccccCCCCCCCEEeecCCCCCCc-ccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceecccccccc
Q 046314 818 LLSHLVSLHASLLSGLSSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCKRL 893 (1137)
Q Consensus 818 ~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~~L 893 (1137)
. .+.++++|++|+|++|.++.+ |..+..+++|++|+|++|+++.+| .+..++ +|+.|++++|+.-
T Consensus 341 ~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~ 408 (455)
T 3v47_A 341 R----------MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWD 408 (455)
T ss_dssp G----------GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBC
T ss_pred h----------HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC-cccEEEccCCCcc
Confidence 2 255678888888888888874 667888888888888888888877 356666 8888888877644
No 20
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.95 E-value=1.2e-29 Score=252.04 Aligned_cols=118 Identities=20% Similarity=0.392 Sum_probs=112.0
Q ss_pred CCcccEEEcccccccCCchHHHHHHHHhcCCCcEEEcC-CCCCCCcchHHHHHHhhhcceeEEEeccccccchhhHHHHH
Q 046314 7 SCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWCLNELV 85 (1137)
Q Consensus 7 ~~~~dvFis~~~~d~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~ 85 (1137)
.++|||||||+|+| |+.|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.||++|+.
T Consensus 18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~ 96 (154)
T 3h16_A 18 APPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD 96 (154)
T ss_dssp CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred CCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence 58999999999999 67899999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCeEEEEEeecCcccccccccchHHHHHHHH
Q 046314 86 KILKCKNLKGQTVIPIYYHVSPSDVRKQTGTFGEGFVKLE 125 (1137)
Q Consensus 86 ~~~~~~~~~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~ 125 (1137)
+|++|...++++|+||||+|+|++||+|.|.|+++|+...
T Consensus 97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred HHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 9999988888899999999999999999999998876543
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=298.12 Aligned_cols=364 Identities=19% Similarity=0.159 Sum_probs=254.6
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceec-CCCCCCCCCCceEEEEecCCCCCC-CCCC-
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQF-PDGLDYLPEKLKYLHLHKYPLRTL-PENF- 610 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~l-p~~l~~l~~~L~~L~l~~~~l~~l-p~~~- 610 (1137)
.+|++.+....+.+..|.++++|++|++++|. ....+ |..+..++ +|++|++++|.+..+ |..+
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~------------~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQY------------TPLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTC------------CCCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSC
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCC------------CccccCHHHhcCCC-CCCEEECCCCcCcccCHhHcc
Confidence 45666666566778889999999999998764 24455 55666674 899999999999977 5566
Q ss_pred cccccceeecccCCchh-hhhhhhhccccceeEEecCCCCCCCccCC--CCCCCcccEeeccCCCCccccCccccCC--C
Q 046314 611 KPKNLIELNLPFSKIVQ-IWEEKRYVKAFKLKSINLSHSQYLIRIPD--PSETPSLERINLWNCTNLAWVPSSIQNF--N 685 (1137)
Q Consensus 611 ~l~~L~~L~L~~n~i~~-l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~~~l~~L~~L~L~~~~~l~~~p~~i~~L--~ 685 (1137)
++.+|++|+|++|.+.. .+....+..+++|++|+|++|.+....+. ++.+++|++|+|++|......+..+..+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 89999999999999886 34443345566999999999998766543 7899999999999998877778888777 7
Q ss_pred cCceEeccCCcCcccCCCCCC-C------CCCceEeccCCccCCCCCc--------------------------------
Q 046314 686 HLSLLCFQGCKNLRSFPSNLH-F------VSPVNIDCSFCVNLTEFPR-------------------------------- 726 (1137)
Q Consensus 686 ~L~~L~L~~c~~l~~lp~~~~-l------~~L~~L~ls~c~~l~~~~~-------------------------------- 726 (1137)
+|+.|++++|......|..+. + .+|+.|++++|..-...+.
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 888888888876665554432 2 2478888887632111110
Q ss_pred ---------ccCCCcEEEecCCCccccC-ccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccccccccc
Q 046314 727 ---------ISGNITKLNLCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSEL 796 (1137)
Q Consensus 727 ---------~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l 796 (1137)
...+|+.|++++|.+..++ ..+..+++|+.|+|++|.+.+..|..+.++++|++|+|++|......+..+
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 0146788888888887764 457888888888888888887778888888888888888888777777788
Q ss_pred CCCCCcceecccCccccccCc-hhhcccccccccc--------CCCCCCCEEeecCCCCCCcccc---------------
Q 046314 797 GNLKSFQYIGAHGSTISQLPH-LLSHLVSLHASLL--------SGLSSLNWLNLNNCALTAIPEE--------------- 852 (1137)
Q Consensus 797 ~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~~~l--------~~l~~L~~L~Ls~n~l~~lp~~--------------- 852 (1137)
..+++|+.|++++|.+..++. .+..+++|+.+.+ ..+++|+.|++++|.++.+|..
T Consensus 335 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414 (844)
T ss_dssp SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCC
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccc
Confidence 888888888888888877765 3444554443322 2245666666666666555432
Q ss_pred -------cCCCCCCCEEEccCCCCCcCC---CCCCcccccceeccccccccccC-----CC---CCCCcceeecccc
Q 046314 853 -------IGCLPSLEWLELRGNNFESLP---SIPELPPSLKWLQASNCKRLQFL-----PE---IPSRPEELDASLL 911 (1137)
Q Consensus 853 -------l~~l~~L~~L~Ls~n~l~~lp---~~~~l~~~L~~L~l~~c~~L~~l-----p~---lp~~L~~L~~~~c 911 (1137)
+..+++|+.|+|++|+++.++ ....++ +|+.|++++|..-... +. -.++|+.|+++++
T Consensus 415 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT-TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred cCchhhhhhcCCccceeeCCCCcccccccccccccCC-ccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 335667777777777766554 123333 6777777766432111 11 1146666666665
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=289.96 Aligned_cols=363 Identities=20% Similarity=0.192 Sum_probs=242.2
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecC-CCCCCCCCCceEEEEecCCCCCCCC-CC-
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFP-DGLDYLPEKLKYLHLHKYPLRTLPE-NF- 610 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp-~~l~~l~~~L~~L~l~~~~l~~lp~-~~- 610 (1137)
.+|++......+...+|.++++|++|++++|. ...++ ..+..+ ++|++|++++|.++.+|+ .+
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-------------IQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCC-------------CCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTT
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCc-------------CCccCcccccCc-hhCCEEeCcCCcCCccCHhhhc
Confidence 35666665556677788999999999998764 33344 345555 488888888888887774 34
Q ss_pred cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCC-ccCC-CCCCCcccEeeccCCCCccccCccccCCCcC-
Q 046314 611 KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLI-RIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHL- 687 (1137)
Q Consensus 611 ~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~-~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L- 687 (1137)
.+.+|++|++++|++..++... +..+++|++|+|++|.+.. .+|. ++++++|++|++++|......+..++.+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred CccccccccccccccccCCCcc-ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 7888888888888888775421 3345588888888887765 3454 7788888888888887666666667777776
Q ss_pred ---ceEeccCCcCcccCCCCCCCCCCceE---------------------------------------------------
Q 046314 688 ---SLLCFQGCKNLRSFPSNLHFVSPVNI--------------------------------------------------- 713 (1137)
Q Consensus 688 ---~~L~L~~c~~l~~lp~~~~l~~L~~L--------------------------------------------------- 713 (1137)
+.|++++|......|..+...+|+.|
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 67777766543333333332234444
Q ss_pred -------------------------------eccCCccCCCCCcccC--CCcEEEecCCCccccCccccCCCCCcEEecc
Q 046314 714 -------------------------------DCSFCVNLTEFPRISG--NITKLNLCDTAIEEVPSSVECLTNLEYLYIN 760 (1137)
Q Consensus 714 -------------------------------~ls~c~~l~~~~~~~~--~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 760 (1137)
++++|. +..+|.... +|++|++++|.+..+|. ..+++|+.|+++
T Consensus 257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~ 333 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFT 333 (570)
T ss_dssp SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEEE
T ss_pred cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhccCCccEEeeccCcccccCc--ccccccCEEeCc
Confidence 443332 122332111 34444444444444443 234444444444
Q ss_pred cccccccccccccCCCCCcEeccccccccccc--ccccCCCCCcceecccCccccccCchhhcccccccc----------
Q 046314 761 RCKRLKRVSTSICKLKSLIWLCLNECLNLEKS--WSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHAS---------- 828 (1137)
Q Consensus 761 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~--~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~---------- 828 (1137)
+|......+. ..+++|++|++++|...... +..+..+++|+.|++++|.+..+|..+..+++|+.+
T Consensus 334 ~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 334 SNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp SCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred CCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc
Confidence 4443333332 56778888888887765433 566777888888888888887776655555555332
Q ss_pred ----ccCCCCCCCEEeecCCCCCC-cccccCCCCCCCEEEccCCCCC--cCC-CCCCcccccceeccccccccccCCCC-
Q 046314 829 ----LLSGLSSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRGNNFE--SLP-SIPELPPSLKWLQASNCKRLQFLPEI- 899 (1137)
Q Consensus 829 ----~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~--~lp-~~~~l~~~L~~L~l~~c~~L~~lp~l- 899 (1137)
.+.++++|++|++++|.+.. .|..+..+++|+.|+|++|.++ .+| .+..++ +|+.|++++|......|..
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-CCCEEECCCCccccCChhhh
Confidence 35668899999999999887 6778899999999999999987 477 777787 9999999998755554543
Q ss_pred --CCCcceeeccccccccccc
Q 046314 900 --PSRPEELDASLLQKLSKYS 918 (1137)
Q Consensus 900 --p~~L~~L~~~~c~~L~~~~ 918 (1137)
.++|+.|++++| .++.++
T Consensus 491 ~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 491 NSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp TTCTTCCEEECCSS-CCSCCC
T ss_pred hcccCCCEEeCCCC-cCCCCC
Confidence 368999999988 455543
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=302.83 Aligned_cols=332 Identities=20% Similarity=0.190 Sum_probs=224.3
Q ss_pred cccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCC-CCCC--C-cccccceee
Q 046314 544 NLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRT-LPEN--F-KPKNLIELN 619 (1137)
Q Consensus 544 ~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~-lp~~--~-~l~~L~~L~ 619 (1137)
.+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.+.. +|.. + .+++|++|+
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N~------------l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSSK------------IYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTCC------------CCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred ccCHHHhcCCCCCCEEECCCCc------------CcccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 4556789999999999998875 2334466777774 89999999998875 4443 3 788999999
Q ss_pred cccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCC--CcccEeeccCCCCccccCccccCCCc------CceE
Q 046314 620 LPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSET--PSLERINLWNCTNLAWVPSSIQNFNH------LSLL 690 (1137)
Q Consensus 620 L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l--~~L~~L~L~~~~~l~~~p~~i~~L~~------L~~L 690 (1137)
|++|.+..+.....+..+++|++|+|++|.+....+. +..+ ++|+.|++++|......|..++.+.+ |+.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 9999888775443445566899999999887665554 4444 78888888888777777776666655 8888
Q ss_pred eccCCcCcccCCCCC---------------------------------------CCCCCceEeccCCccCCCCCc---cc
Q 046314 691 CFQGCKNLRSFPSNL---------------------------------------HFVSPVNIDCSFCVNLTEFPR---IS 728 (1137)
Q Consensus 691 ~L~~c~~l~~lp~~~---------------------------------------~l~~L~~L~ls~c~~l~~~~~---~~ 728 (1137)
++++|......|..+ ...+|+.|++++|......|. ..
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 888774332222111 125688888887654333333 23
Q ss_pred CCCcEEEecCCCccccC-ccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecc
Q 046314 729 GNITKLNLCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGA 807 (1137)
Q Consensus 729 ~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 807 (1137)
.+|+.|+|++|.+..++ ..+..+++|++|+|++|.+.+..|..+.++++|+.|++++|......+..+..+++|+.|++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 47788888888888774 45788888888888888887777888888888888888888766666666788888888888
Q ss_pred cCccccccCchhhccccc-----------------ccc--------------ccCCCCCCCEEeecCCCCCCccc--ccC
Q 046314 808 HGSTISQLPHLLSHLVSL-----------------HAS--------------LLSGLSSLNWLNLNNCALTAIPE--EIG 854 (1137)
Q Consensus 808 ~~n~i~~lp~~l~~l~~L-----------------~~~--------------~l~~l~~L~~L~Ls~n~l~~lp~--~l~ 854 (1137)
++|.++.++. +..+..| ..+ .+.++++|+.|+|++|.++.++. .+.
T Consensus 370 s~N~l~~i~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 370 RDNALTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp ETCCSCCCSS-CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred CCCCCCcccC-CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence 8887776543 1111110 000 12356777777777777775433 234
Q ss_pred CCCCCCEEEccCCCCCcCC-------CCCCcccccceeccccc
Q 046314 855 CLPSLEWLELRGNNFESLP-------SIPELPPSLKWLQASNC 890 (1137)
Q Consensus 855 ~l~~L~~L~Ls~n~l~~lp-------~~~~l~~~L~~L~l~~c 890 (1137)
.+++|+.|+|++|.++.++ .+..++ +|+.|+|++|
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~-~L~~L~Ls~N 490 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLS-HLQVLYLNHN 490 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC-CEECCCCCHH
T ss_pred cCCccccccCCCCccccccccccchhhhcCcc-cccEEECCCC
Confidence 4556666666666554322 233444 5555555555
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=9.7e-27 Score=285.33 Aligned_cols=334 Identities=19% Similarity=0.152 Sum_probs=248.6
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCccc
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPK 613 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~ 613 (1137)
.+|++.+....+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++.+|.. .++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~------------l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~ 121 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNR------------IRSLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-PMA 121 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCC------------CCEECTTTTTTCT-TCCEEECTTSCCCEECSC-CCT
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCC------------CCcCCHHHhCCCC-CCCEEECCCCcCCccCcc-ccc
Confidence 45666666666777899999999999998875 2233355666664 899999999999999988 899
Q ss_pred ccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcc--cEeeccCCCC--ccccCccccC------
Q 046314 614 NLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSL--ERINLWNCTN--LAWVPSSIQN------ 683 (1137)
Q Consensus 614 ~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L--~~L~L~~~~~--l~~~p~~i~~------ 683 (1137)
+|++|+|++|++..++....+..+++|++|+|++|.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 999999999999987643344555699999999998754 345555555 9999999877 5555554443
Q ss_pred --------------------CCcCceEeccCCcC-----------cc---------------------cCCCCCCCCCCc
Q 046314 684 --------------------FNHLSLLCFQGCKN-----------LR---------------------SFPSNLHFVSPV 711 (1137)
Q Consensus 684 --------------------L~~L~~L~L~~c~~-----------l~---------------------~lp~~~~l~~L~ 711 (1137)
+++|+.|++++|.. +. .++......+|+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 34555555555420 00 001111122555
Q ss_pred eEeccCCccCCCCCccc----------------------------------CCCcEEEecCCCccccCccccCCCCCcEE
Q 046314 712 NIDCSFCVNLTEFPRIS----------------------------------GNITKLNLCDTAIEEVPSSVECLTNLEYL 757 (1137)
Q Consensus 712 ~L~ls~c~~l~~~~~~~----------------------------------~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 757 (1137)
.|++++|.....+|... .+++.|++++|.+..++. ...+++|++|
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L 358 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEE
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEE
Confidence 66665554333444322 357888888888765542 2688999999
Q ss_pred ecccccccccccccccCCCCCcEeccccccccc--ccccccCCCCCcceecccCccccc-cCchhhccccccccccCCCC
Q 046314 758 YINRCKRLKRVSTSICKLKSLIWLCLNECLNLE--KSWSELGNLKSFQYIGAHGSTISQ-LPHLLSHLVSLHASLLSGLS 834 (1137)
Q Consensus 758 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~~n~i~~-lp~~l~~l~~L~~~~l~~l~ 834 (1137)
++++|.+.+..|..+.++++|++|++++|.... ..|..+.++++|+.|++++|.+.. +|... +.+++
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----------~~~l~ 428 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT----------CAWAE 428 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC----------CCCCT
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh----------hcCcc
Confidence 999999999899999999999999999998765 456778999999999999999987 77642 56789
Q ss_pred CCCEEeecCCCCCC-cccccCCCCCCCEEEccCCCCCcCC-CCCCcccccceeccccccccccCCC
Q 046314 835 SLNWLNLNNCALTA-IPEEIGCLPSLEWLELRGNNFESLP-SIPELPPSLKWLQASNCKRLQFLPE 898 (1137)
Q Consensus 835 ~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c~~L~~lp~ 898 (1137)
+|++|+|++|.+++ +|..+. ++|+.|+|++|+++.+| .+..++ +|+.|++++|. ++.+|.
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~-~L~~L~L~~N~-l~~l~~ 490 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQ-ALQELNVASNQ-LKSVPD 490 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSC-CCSEEECCSSC-CCCCCT
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCC-CCCEEECCCCC-CCCCCH
Confidence 99999999999976 555443 79999999999999999 677777 99999999875 555554
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.7e-26 Score=275.77 Aligned_cols=330 Identities=17% Similarity=0.139 Sum_probs=240.4
Q ss_pred CCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCC-CCCC-CC-cccccceeecccCCchhhh-
Q 046314 554 SSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLR-TLPE-NF-KPKNLIELNLPFSKIVQIW- 629 (1137)
Q Consensus 554 ~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~-~lp~-~~-~l~~L~~L~L~~n~i~~l~- 629 (1137)
++|++|++++|. .....|..+..++ +|++|++++|.+. .+|. .+ .+++|++|+|++|++..+.
T Consensus 30 ~~l~~L~Ls~n~------------i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 30 AHVNYVDLSLNS------------IAELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp TTCCEEECCSSC------------CCEECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CccCEEEecCCc------------cCcCChhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence 678999988765 2333466666664 8999999988876 5544 34 7888999999999887763
Q ss_pred hhhhhccccceeEEecCCCCCCCccC-C--CCCCCcccEeeccCCCCccccCcc-ccCCCcCceEeccCCcCcccCCCCC
Q 046314 630 EEKRYVKAFKLKSINLSHSQYLIRIP-D--PSETPSLERINLWNCTNLAWVPSS-IQNFNHLSLLCFQGCKNLRSFPSNL 705 (1137)
Q Consensus 630 ~~~~~~~l~~L~~L~Ls~n~~~~~~p-~--~~~l~~L~~L~L~~~~~l~~~p~~-i~~L~~L~~L~L~~c~~l~~lp~~~ 705 (1137)
.... .+++|++|+|++|.+....| . +..+++|++|+|++|......|.. +.++++|++|++++|......|..+
T Consensus 97 ~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 97 GAFN--GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp TTTT--TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred hhcc--CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 3333 34489999999988765433 2 788889999999988777666665 7888999999998887655555554
Q ss_pred C---CCCCceEeccCCccCCCCCc-----------ccCCCcEEEecCCCccc-cCccccC---CCCCcEEeccccccccc
Q 046314 706 H---FVSPVNIDCSFCVNLTEFPR-----------ISGNITKLNLCDTAIEE-VPSSVEC---LTNLEYLYINRCKRLKR 767 (1137)
Q Consensus 706 ~---l~~L~~L~ls~c~~l~~~~~-----------~~~~L~~L~L~~~~i~~-lp~~i~~---l~~L~~L~L~~~~~l~~ 767 (1137)
. ..+|+.|+++++.....-+. ...+|+.|++++|.+.. +|..+.. .++|+.|++++|...+.
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 3 36788888887653332211 12468888888888764 3444433 37888888888765432
Q ss_pred cc----------cccc--CCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCC
Q 046314 768 VS----------TSIC--KLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSS 835 (1137)
Q Consensus 768 lp----------~~l~--~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~ 835 (1137)
.. ..+. ..++|++|++++|......|..+..+++|+.|++++|.+..++.. .+.++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~ 324 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN----------AFWGLTH 324 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT----------TTTTCTT
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh----------HhcCccc
Confidence 11 1122 236899999999998888888999999999999999999877542 2567899
Q ss_pred CCEEeecCCCCCCc-ccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceeccccccccccCCC-C---CCCcceeec
Q 046314 836 LNWLNLNNCALTAI-PEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCKRLQFLPE-I---PSRPEELDA 908 (1137)
Q Consensus 836 L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~~L~~lp~-l---p~~L~~L~~ 908 (1137)
|++|+|++|.++++ |..+..+++|++|+|++|+++.++ .+..++ +|+.|++++|+ ++.+|. . .++|+.|++
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc-cccEEECCCCc-cccCCHhHhccCCcccEEEc
Confidence 99999999999985 678899999999999999999884 678887 99999999975 444443 2 234555554
Q ss_pred cc
Q 046314 909 SL 910 (1137)
Q Consensus 909 ~~ 910 (1137)
++
T Consensus 403 ~~ 404 (455)
T 3v47_A 403 HT 404 (455)
T ss_dssp CS
T ss_pred cC
Confidence 44
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.4e-25 Score=281.88 Aligned_cols=277 Identities=19% Similarity=0.130 Sum_probs=151.1
Q ss_pred ceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcc-----cCCC----CC-CC
Q 046314 639 KLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLR-----SFPS----NL-HF 707 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~-----~lp~----~~-~l 707 (1137)
+|+.|+|++|.+....|. +..+++|++|++++|......|..+..+++|+.|++++|.... .+|. .+ .+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 377777777776555544 6777777777777776666666666677777777666543221 2221 12 25
Q ss_pred CCCceEeccCCccCCCCCc---ccCCCcEEEecCCC--ccccCcc-ccC--CCCCcEEecccccccccccccccCCCCCc
Q 046314 708 VSPVNIDCSFCVNLTEFPR---ISGNITKLNLCDTA--IEEVPSS-VEC--LTNLEYLYINRCKRLKRVSTSICKLKSLI 779 (1137)
Q Consensus 708 ~~L~~L~ls~c~~l~~~~~---~~~~L~~L~L~~~~--i~~lp~~-i~~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 779 (1137)
++|+.|++++|......+. ...+|++|++++|. +..++.. +.. .++|+.|++++|.+.+..|..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 5666666666543222222 12345555555543 2222221 111 13444555555544444444444445555
Q ss_pred Eecccccccccccc-cccCCCCCcceecccCccccccCc-hhhccccccc---------------cccCCCCCCCEEeec
Q 046314 780 WLCLNECLNLEKSW-SELGNLKSFQYIGAHGSTISQLPH-LLSHLVSLHA---------------SLLSGLSSLNWLNLN 842 (1137)
Q Consensus 780 ~L~L~~~~~~~~~~-~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~---------------~~l~~l~~L~~L~Ls 842 (1137)
.|++++|.....+| ..+.++++|+.|++++|.+..++. .+..+++|+. ..+.++++|+.|+|+
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 55555444443332 334444444445444444443321 2222222211 124567788888888
Q ss_pred CCCCCCccc-ccCCCCCCCEEEccCCCCCcCC----------CCCCcccccceeccccccccccCCC-C---CCCcceee
Q 046314 843 NCALTAIPE-EIGCLPSLEWLELRGNNFESLP----------SIPELPPSLKWLQASNCKRLQFLPE-I---PSRPEELD 907 (1137)
Q Consensus 843 ~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp----------~~~~l~~~L~~L~l~~c~~L~~lp~-l---p~~L~~L~ 907 (1137)
+|.++.+|. .+..+++|+.|+|++|+++.++ .+..++ +|+.|++++|. +..+|. . .++|+.|+
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNG-FDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT-TCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC-CCCEEECCCCC-CCCCCHHHcccccCcceeE
Confidence 888887654 4778888888888888887653 245666 88888888764 445553 1 24677777
Q ss_pred ccccccccccc
Q 046314 908 ASLLQKLSKYS 918 (1137)
Q Consensus 908 ~~~c~~L~~~~ 918 (1137)
++++ .|+.++
T Consensus 567 Ls~N-~l~~l~ 576 (680)
T 1ziw_A 567 LGLN-NLNTLP 576 (680)
T ss_dssp CCSS-CCCCCC
T ss_pred CCCC-CCCcCC
Confidence 7654 444443
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=3.9e-26 Score=273.08 Aligned_cols=322 Identities=18% Similarity=0.212 Sum_probs=241.8
Q ss_pred ccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCchhh
Q 046314 549 AFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQI 628 (1137)
Q Consensus 549 ~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l 628 (1137)
.|..+++|++|++++|. ...++. +..+ ++|++|++++|.+..+++...+++|++|++++|.+..+
T Consensus 63 ~~~~l~~L~~L~Ls~n~-------------l~~~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ 127 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQ-------------LTDITP-LKNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 127 (466)
T ss_dssp TGGGCTTCCEEECCSSC-------------CCCCGG-GTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred chhhhcCCCEEECCCCc-------------cCCchh-hhcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC
Confidence 37788899999998764 223333 5555 48999999999988888744888999999999988887
Q ss_pred hhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCC
Q 046314 629 WEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFV 708 (1137)
Q Consensus 629 ~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~ 708 (1137)
+. ...+++|++|++++|.+. .++.+..+++|++|+++++ . ..++ .+.++++|+.|++++|. +..++....++
T Consensus 128 ~~---~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~~-~-~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~l~ 199 (466)
T 1o6v_A 128 DP---LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ-V-TDLK-PLANLTTLERLDISSNK-VSDISVLAKLT 199 (466)
T ss_dssp GG---GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEES-C-CCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCT
T ss_pred hH---HcCCCCCCEEECCCCccC-CChhhccCCcccEeecCCc-c-cCch-hhccCCCCCEEECcCCc-CCCChhhccCC
Confidence 54 344558999999988754 4566888899999998642 2 2333 38888999999998875 45555544578
Q ss_pred CCceEeccCCccCCCCC-cccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccc
Q 046314 709 SPVNIDCSFCVNLTEFP-RISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECL 787 (1137)
Q Consensus 709 ~L~~L~ls~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 787 (1137)
+|+.|++++|......| ....+|+.|++++|.+..++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.
T Consensus 200 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 200 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276 (466)
T ss_dssp TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred CCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCc
Confidence 89999998875433222 23457889999999888875 47888899999999988776554 7888899999999887
Q ss_pred cccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCC
Q 046314 788 NLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGN 867 (1137)
Q Consensus 788 ~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 867 (1137)
.....+ +..+++|+.|++++|.+..++. +..+++|+.|+|++|.+++++. +..+++|+.|++++|
T Consensus 277 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~------------~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 277 ISNISP--LAGLTALTNLELNENQLEDISP------------ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSSCCSCCGG------------GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred cCcccc--ccCCCccCeEEcCCCcccCchh------------hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence 665433 7888899999999988887664 4567889999999999888665 778899999999999
Q ss_pred CCCcCCCCCCcccccceeccccccccccCC-CCCCCcceeeccccc
Q 046314 868 NFESLPSIPELPPSLKWLQASNCKRLQFLP-EIPSRPEELDASLLQ 912 (1137)
Q Consensus 868 ~l~~lp~~~~l~~~L~~L~l~~c~~L~~lp-~lp~~L~~L~~~~c~ 912 (1137)
.++.++.+..++ +|+.|++++|+.....| .-.++|+.|++.+|+
T Consensus 342 ~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 342 KVSDVSSLANLT-NINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCCCGGGTTCT-TCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred ccCCchhhccCC-CCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 998888788887 89999999886443333 112456666666653
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.1e-25 Score=258.46 Aligned_cols=303 Identities=19% Similarity=0.251 Sum_probs=205.2
Q ss_pred ccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCchhh
Q 046314 549 AFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQI 628 (1137)
Q Consensus 549 ~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l 628 (1137)
.+..+++|+.|+++++. ...++ ++..+ ++|++|++++|.++.+|....+++|++|++++|.+..+
T Consensus 39 ~~~~l~~L~~L~l~~~~-------------i~~~~-~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~ 103 (347)
T 4fmz_A 39 TQEELESITKLVVAGEK-------------VASIQ-GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI 103 (347)
T ss_dssp CHHHHTTCSEEECCSSC-------------CCCCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred cchhcccccEEEEeCCc-------------cccch-hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc
Confidence 35578899999997764 23343 35555 48999999999999888844888999999999988876
Q ss_pred hhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCC
Q 046314 629 WEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFV 708 (1137)
Q Consensus 629 ~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~ 708 (1137)
+ . +..+++|++|++++|.+.. ++.+..+++|++|++++|.....++. +..+++|++|++++|. +..++....++
T Consensus 104 ~-~--~~~l~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~l~ 177 (347)
T 4fmz_A 104 S-A--LQNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTPIANLT 177 (347)
T ss_dssp G-G--GTTCTTCSEEECTTSCCCC-CGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCT
T ss_pred h-H--HcCCCcCCEEECcCCcccC-chhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchhhccCC
Confidence 4 2 3445589999999888654 44488888999999998876665544 8888899999998875 33444333467
Q ss_pred CCceEeccCCccCCCCCc--ccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEeccccc
Q 046314 709 SPVNIDCSFCVNLTEFPR--ISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNEC 786 (1137)
Q Consensus 709 ~L~~L~ls~c~~l~~~~~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~ 786 (1137)
+|+.|++++|. +..++. ...+|+.|++++|.+..++. +..+++|+.|++++|.+....+ +..+++|++|++++|
T Consensus 178 ~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 178 DLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp TCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCCEEEccCCc-ccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence 77777777753 333332 23466777777777766655 6666777777777776554333 666777777777776
Q ss_pred ccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC-cccccCCCCCCCEEEcc
Q 046314 787 LNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-IPEEIGCLPSLEWLELR 865 (1137)
Q Consensus 787 ~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls 865 (1137)
.... + ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.+++ .|..+..+++|+.|+|+
T Consensus 254 ~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 254 QISD-I-NAVKDLTKLKMLNVGSNQISDISV------------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp CCCC-C-GGGTTCTTCCEEECCSSCCCCCGG------------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred ccCC-C-hhHhcCCCcCEEEccCCccCCChh------------hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 5443 2 346666777777777776666542 3456667777777777665 34556667777777777
Q ss_pred CCCCCcCCCCCCcccccceecccccc
Q 046314 866 GNNFESLPSIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 866 ~n~l~~lp~~~~l~~~L~~L~l~~c~ 891 (1137)
+|+++.++.+..++ +|+.|++++|+
T Consensus 320 ~n~l~~~~~~~~l~-~L~~L~l~~N~ 344 (347)
T 4fmz_A 320 QNHITDIRPLASLS-KMDSADFANQV 344 (347)
T ss_dssp SSSCCCCGGGGGCT-TCSEESSSCC-
T ss_pred CCccccccChhhhh-ccceeehhhhc
Confidence 77776665555555 66666666654
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=8.5e-26 Score=276.95 Aligned_cols=349 Identities=16% Similarity=0.165 Sum_probs=252.5
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecC-CCCCCCCCCceEEEEecCCCCCCCC-CC-
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFP-DGLDYLPEKLKYLHLHKYPLRTLPE-NF- 610 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp-~~l~~l~~~L~~L~l~~~~l~~lp~-~~- 610 (1137)
.+|++......++...+ ++|+.|++++|. ...++ ..+..++ +|++|++++|.++.+++ .+
T Consensus 35 ~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~-------------i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLP---PRTKALSLSQNS-------------ISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp EEECTTSCCCSCCTTSC---TTCCEEECCSSC-------------CCCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTT
T ss_pred EEEcCCCCCccCCCCCC---CCcCEEECCCCC-------------ccccChhhhccCC-CccEEECCCCCCCcCCHHHhC
Confidence 45555554444555443 789999998875 33344 4566664 89999999999998854 45
Q ss_pred cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCc-cC-CCCCCCcccEeeccCCCCccccCccccCCCcC-
Q 046314 611 KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIR-IP-DPSETPSLERINLWNCTNLAWVPSSIQNFNHL- 687 (1137)
Q Consensus 611 ~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~-~p-~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L- 687 (1137)
.+++|++|+|++|+++.++.. .+++|++|+|++|.+... .| .+..+++|++|++++|.... ..+..+++|
T Consensus 98 ~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~ 170 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLH 170 (562)
T ss_dssp TCTTCCEEECTTSCCCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSC
T ss_pred CCCCCCEEECCCCcCCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhce
Confidence 789999999999999988765 455999999999997653 33 47899999999999987654 345566666
Q ss_pred -ceEeccCCcC--cccCCCCC---------------------------CCCCCceEeccCCcc-----------CCCC--
Q 046314 688 -SLLCFQGCKN--LRSFPSNL---------------------------HFVSPVNIDCSFCVN-----------LTEF-- 724 (1137)
Q Consensus 688 -~~L~L~~c~~--l~~lp~~~---------------------------~l~~L~~L~ls~c~~-----------l~~~-- 724 (1137)
+.|++++|.. ....|..+ .+.+|+.++++++.. +...
T Consensus 171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250 (562)
T ss_dssp EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence 9999998866 33333322 133455566555310 0000
Q ss_pred -------------------Cc--ccCCCcEEEecCCCcc-ccCccc-----cCCC-------------------------
Q 046314 725 -------------------PR--ISGNITKLNLCDTAIE-EVPSSV-----ECLT------------------------- 752 (1137)
Q Consensus 725 -------------------~~--~~~~L~~L~L~~~~i~-~lp~~i-----~~l~------------------------- 752 (1137)
+. ...+|++|++++|.+. .+|..+ ..++
T Consensus 251 L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred ceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc
Confidence 00 1127899999999887 788765 3333
Q ss_pred -CCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccC
Q 046314 753 -NLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLS 831 (1137)
Q Consensus 753 -~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~ 831 (1137)
+|+.|++++|.+.... ....+++|++|++++|......|..+.++++|+.|++++|.++.++.... .+.
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~~ 400 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL--------MTK 400 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH--------TTT
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh--------hhc
Confidence 4666777776653221 12688999999999999988889999999999999999999997764211 256
Q ss_pred CCCCCCEEeecCCCCCC-cccc-cCCCCCCCEEEccCCCCCcCCCCCCcccccceeccccccccccCCCC---CCCccee
Q 046314 832 GLSSLNWLNLNNCALTA-IPEE-IGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASNCKRLQFLPEI---PSRPEEL 906 (1137)
Q Consensus 832 ~l~~L~~L~Ls~n~l~~-lp~~-l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~c~~L~~lp~l---p~~L~~L 906 (1137)
++++|++|+|++|.++. +|.. +..+++|+.|+|++|+++... ...++++|+.|++++| .++.+|.. .++|+.|
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQEL 478 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEE
T ss_pred CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEE
Confidence 78999999999999998 8864 788999999999999996422 1123249999999998 56677652 3689999
Q ss_pred ecccccccccccc
Q 046314 907 DASLLQKLSKYSY 919 (1137)
Q Consensus 907 ~~~~c~~L~~~~~ 919 (1137)
+++++ .|+.++.
T Consensus 479 ~L~~N-~l~~l~~ 490 (562)
T 3a79_B 479 NVASN-QLKSVPD 490 (562)
T ss_dssp ECCSS-CCCCCCT
T ss_pred ECCCC-CCCCCCH
Confidence 99987 4555554
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1e-25 Score=283.14 Aligned_cols=363 Identities=23% Similarity=0.214 Sum_probs=250.2
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCC-C-c
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPEN-F-K 611 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~ 611 (1137)
.+|++......+.+.+|.++++|++|++++|.. ....|..+..+ ++|++|++++|.++.+|.. + .
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI------------SKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC------------CCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc------------CccCHHHHhcc-cCcCEEECCCCccCccChhhhcc
Confidence 345555555556777889999999999987642 22223444455 4889999999988888874 4 7
Q ss_pred ccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCcccc--CCCcCc
Q 046314 612 PKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQ--NFNHLS 688 (1137)
Q Consensus 612 l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~--~L~~L~ 688 (1137)
+.+|++|+|++|++..++.. .+..+++|++|+|++|.+....|. +..+++|++|++++|......+..+. .+++|+
T Consensus 96 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred CCCCCEEECCCCccCccChh-HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 88899999999888877532 233455899999998887766665 67888899999988866555444443 457888
Q ss_pred eEeccCCcCcccCCCCCC----------------------------CCCCceEeccCCccCCCCCccc-----CCCcEEE
Q 046314 689 LLCFQGCKNLRSFPSNLH----------------------------FVSPVNIDCSFCVNLTEFPRIS-----GNITKLN 735 (1137)
Q Consensus 689 ~L~L~~c~~l~~lp~~~~----------------------------l~~L~~L~ls~c~~l~~~~~~~-----~~L~~L~ 735 (1137)
.|++++|......|..+. ..+|+.|++++|......|..+ .+|+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 888888754333333221 2567777777765443334333 2489999
Q ss_pred ecCCCccccC-ccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccc-----cccc----ccCCCCCccee
Q 046314 736 LCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLE-----KSWS----ELGNLKSFQYI 805 (1137)
Q Consensus 736 L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~-----~~~~----~l~~l~~L~~L 805 (1137)
+++|.+..++ ..++.+++|++|++++|.+.+..|..+.++++|+.|++++|.... .+|. .+..+++|+.|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 9999988775 458889999999999998888888888888889998888764332 2332 57788888888
Q ss_pred cccCccccccCc-hhhccccccccccCC-----------------CCCCCEEeecCCCCCCc-ccccCCCCCCCEEEccC
Q 046314 806 GAHGSTISQLPH-LLSHLVSLHASLLSG-----------------LSSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRG 866 (1137)
Q Consensus 806 ~l~~n~i~~lp~-~l~~l~~L~~~~l~~-----------------l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~ 866 (1137)
++++|.+..++. .+..+++|+.+.+++ .++|+.|++++|.++.+ |..+..+++|+.|+|++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 888888886654 455566665554432 14677888888877774 56677788888888888
Q ss_pred CCCCc-CC--CCCCcccccceeccccccccccCCC---CCCCcceeecccc
Q 046314 867 NNFES-LP--SIPELPPSLKWLQASNCKRLQFLPE---IPSRPEELDASLL 911 (1137)
Q Consensus 867 n~l~~-lp--~~~~l~~~L~~L~l~~c~~L~~lp~---lp~~L~~L~~~~c 911 (1137)
|.+.. +| .+..++ +|+.|++++|+.....+. ..++|+.|++.+|
T Consensus 415 N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464 (680)
T ss_dssp SCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS
T ss_pred CcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccc
Confidence 87763 44 456666 777777777763332222 1245666665544
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=7.1e-26 Score=260.00 Aligned_cols=296 Identities=18% Similarity=0.169 Sum_probs=207.8
Q ss_pred CCceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccC
Q 046314 591 EKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWN 670 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~ 670 (1137)
++|+.|+++++.+..+|....+++|++|++++|.+..++. +..+++|++|++++|.+. .++.+..+++|++|++++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNE 119 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEECTT
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCccc-CchHHcCCCcCCEEECcC
Confidence 3688888888888887765577888888888888777654 334458888888887644 356677888888888887
Q ss_pred CCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCc--ccCCCcEEEecCCCccccCccc
Q 046314 671 CTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPR--ISGNITKLNLCDTAIEEVPSSV 748 (1137)
Q Consensus 671 ~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~--~~~~L~~L~L~~~~i~~lp~~i 748 (1137)
|.... ++. +..+++|+.|++++|.....++....+++|+.|++++|.. ..++. ...+|+.|++++|.+..++. +
T Consensus 120 n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~ 195 (347)
T 4fmz_A 120 DNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTPIANLTDLYSLSLNYNQIEDISP-L 195 (347)
T ss_dssp SCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECTTSCCCCCGG-G
T ss_pred CcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchhhccCCCCCEEEccCCccccccc-c
Confidence 75443 333 7778888888888877777666655577888888887653 33322 34477888888888877766 7
Q ss_pred cCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhcccccccc
Q 046314 749 ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHAS 828 (1137)
Q Consensus 749 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~ 828 (1137)
..+++|+.|++++|.+....+ +..+++|++|++++|......+ +..+++|+.|++++|.+..++.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----------- 260 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA----------- 260 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-----------
T ss_pred cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChh-----------
Confidence 778888888888877665444 6777888888888876554333 7778888888888887776643
Q ss_pred ccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceeccccccccccCC-CCCCCcce
Q 046314 829 LLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCKRLQFLP-EIPSRPEE 905 (1137)
Q Consensus 829 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~~L~~lp-~lp~~L~~ 905 (1137)
+..+++|++|++++|.+++++ .+..+++|+.|+|++|.++..+ .+..++ +|+.|++++|+.....| .-.++|+.
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~ 337 (347)
T 4fmz_A 261 -VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLFLSQNHITDIRPLASLSKMDS 337 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCT-TCSEEECCSSSCCCCGGGGGCTTCSE
T ss_pred -HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccc-cCCEEEccCCccccccChhhhhccce
Confidence 456778888888888887774 4677788888888888877655 456666 78888888876332222 12356666
Q ss_pred eeccccc
Q 046314 906 LDASLLQ 912 (1137)
Q Consensus 906 L~~~~c~ 912 (1137)
|++++|+
T Consensus 338 L~l~~N~ 344 (347)
T 4fmz_A 338 ADFANQV 344 (347)
T ss_dssp ESSSCC-
T ss_pred eehhhhc
Confidence 6666653
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=6.9e-26 Score=277.30 Aligned_cols=338 Identities=18% Similarity=0.201 Sum_probs=212.7
Q ss_pred CCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCC-CC-cccccceeecccCCchhhhhh
Q 046314 554 SSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPE-NF-KPKNLIELNLPFSKIVQIWEE 631 (1137)
Q Consensus 554 ~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~~ 631 (1137)
++|++|++++|. .....|..+..++ +|++|++++|.++.+++ .+ .+.+|++|+|++|.+..++..
T Consensus 26 ~~L~~L~Ls~n~------------l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNK------------ITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSC------------CCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCccEEECcCCc------------cCccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 689999998875 2333456677774 89999999999998875 34 899999999999999988665
Q ss_pred hhhccccceeEEecCCCCCCC-ccC-CCCCCCcccEeeccCCCCccccC-ccccCCCcCceEeccCCcCcccCCCCCC-C
Q 046314 632 KRYVKAFKLKSINLSHSQYLI-RIP-DPSETPSLERINLWNCTNLAWVP-SSIQNFNHLSLLCFQGCKNLRSFPSNLH-F 707 (1137)
Q Consensus 632 ~~~~~l~~L~~L~Ls~n~~~~-~~p-~~~~l~~L~~L~L~~~~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~~-l 707 (1137)
. +..+++|++|+|++|.+.. ..| .+..+++|++|++++|.....+| ..+.++++|+.|++++|......|..+. +
T Consensus 93 ~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 W-FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp H-HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred H-hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 2 3345599999999999765 334 48999999999999998677776 5799999999999999887766776664 5
Q ss_pred CCCceEeccCCccCCCCCc----ccCCCcEEEecCCCccccC--------------------------------ccccCC
Q 046314 708 VSPVNIDCSFCVNLTEFPR----ISGNITKLNLCDTAIEEVP--------------------------------SSVECL 751 (1137)
Q Consensus 708 ~~L~~L~ls~c~~l~~~~~----~~~~L~~L~L~~~~i~~lp--------------------------------~~i~~l 751 (1137)
.+|+.|+++++.. ..+|. ...+|++|++++|.+..++ ..+..+
T Consensus 172 ~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 172 RDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp SEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred ccCceEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 5666666655432 22221 1234555555555444321 111222
Q ss_pred CCCcEEeccccccc----------------------------------------------------------ccccccc-
Q 046314 752 TNLEYLYINRCKRL----------------------------------------------------------KRVSTSI- 772 (1137)
Q Consensus 752 ~~L~~L~L~~~~~l----------------------------------------------------------~~lp~~l- 772 (1137)
++|+.|++++|... ..+|..+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 23333333333221 1233332
Q ss_pred cCCCCCcEecccccccccccc---cccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCc
Q 046314 773 CKLKSLIWLCLNECLNLEKSW---SELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAI 849 (1137)
Q Consensus 773 ~~l~~L~~L~L~~~~~~~~~~---~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l 849 (1137)
.++++|++|++++|......| ..++.+++|+.|++++|.++.++..- ..+..+++|++|+|++|.++.+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~~~l~~L~~L~Ls~N~l~~l 402 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG--------EILLTLKNLTSLDISRNTFHPM 402 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH--------HHGGGCTTCCEEECTTCCCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch--------hhhhcCCCCCEEECCCCCCccC
Confidence 245555555555555444332 22445555555555555555443210 0134566777777777777777
Q ss_pred ccccCCCCCCCEEEccCCCCCcCCCCCCcccccceeccccccccccCCCCCCCcceeeccccccccccc
Q 046314 850 PEEIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASNCKRLQFLPEIPSRPEELDASLLQKLSKYS 918 (1137)
Q Consensus 850 p~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~~L~~~~ 918 (1137)
|..+..+++|++|+|++|.++.+|.. ++++|+.|++++|. ++.++.-.++|+.|+++++ .++.++
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~~l~~~--~~~~L~~L~Ls~N~-l~~~~~~l~~L~~L~Ls~N-~l~~ip 467 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIRVVKTC--IPQTLEVLDVSNNN-LDSFSLFLPRLQELYISRN-KLKTLP 467 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCSCCCTT--SCTTCSEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCC
T ss_pred ChhhcccccccEEECCCCCcccccch--hcCCceEEECCCCC-hhhhcccCChhcEEECCCC-ccCcCC
Confidence 77777777777777777777666621 12367777777663 4444444456777777766 444443
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.1e-25 Score=267.77 Aligned_cols=298 Identities=18% Similarity=0.226 Sum_probs=222.8
Q ss_pred ceecCCCCCCCCCCceEEEEecCCCCCCCC-CC-cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC
Q 046314 579 KVQFPDGLDYLPEKLKYLHLHKYPLRTLPE-NF-KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD 656 (1137)
Q Consensus 579 ~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~ 656 (1137)
...+|.++ |++|++|++++|.++.++. .+ .+++|++|+|++|.+..+... .+..+++|++|+|++|.+....+.
T Consensus 23 l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 23 FVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTT
T ss_pred cCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcc
Confidence 34455543 4578888888888887754 34 788888888888888776332 233445888888888876554444
Q ss_pred -CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCC-CCCCCceEeccCCccCCCCCc----ccCC
Q 046314 657 -PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNL-HFVSPVNIDCSFCVNLTEFPR----ISGN 730 (1137)
Q Consensus 657 -~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ls~c~~l~~~~~----~~~~ 730 (1137)
+..+++|++|+|++|......+..+..+++|+.|+|++|......|..+ .+.+|+.|++++|. ++.++. ...+
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTT
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCC
Confidence 6788888888888887777777788888888888888876544444444 36778888887763 444442 3457
Q ss_pred CcEEEecCCCccccCc-cccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccC
Q 046314 731 ITKLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG 809 (1137)
Q Consensus 731 L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 809 (1137)
|+.|++++|.+..++. .+..+++|+.|++++|...+.+|..+....+|++|++++|......+..+..+++|+.|++++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 8888888888887765 478888888888888888888887777777888888888876654446688888888888888
Q ss_pred ccccccCchhhccccccccccCCCCCCCEEeecCCCCCCc-ccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceec
Q 046314 810 STISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQ 886 (1137)
Q Consensus 810 n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~ 886 (1137)
|.+..++.. .+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+| .+..++ +|+.|+
T Consensus 258 n~l~~~~~~----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~ 326 (477)
T 2id5_A 258 NPISTIEGS----------MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG-NLETLI 326 (477)
T ss_dssp SCCCEECTT----------SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG-GCCEEE
T ss_pred CcCCccChh----------hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc-ccCEEE
Confidence 888876653 256788888888888888874 667888888888999888888888 456676 888888
Q ss_pred cccccc
Q 046314 887 ASNCKR 892 (1137)
Q Consensus 887 l~~c~~ 892 (1137)
+++|+.
T Consensus 327 l~~N~l 332 (477)
T 2id5_A 327 LDSNPL 332 (477)
T ss_dssp CCSSCE
T ss_pred ccCCCc
Confidence 887753
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.5e-25 Score=273.65 Aligned_cols=231 Identities=18% Similarity=0.181 Sum_probs=138.7
Q ss_pred cCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCc-ccCCCcEEEecCCCccccCccccCCCCCc
Q 046314 677 VPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPR-ISGNITKLNLCDTAIEEVPSSVECLTNLE 755 (1137)
Q Consensus 677 ~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~ 755 (1137)
.|..+..+++|+.|++++|. +..+|..+...+|+.|++++|... .+|. ...+|+.|++++|.+...... ..+++|+
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~ 350 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLE 350 (570)
T ss_dssp STTTTGGGTTCSEEEEESCE-ECSCCBCCSCCCCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCC
T ss_pred chhhhcCcCcccEEEecCcc-chhhhhhhccCCccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc-ccCCCCC
Confidence 34456667778888887764 445666554227777777766432 3432 233455555555544433222 4445555
Q ss_pred EEecccccccccc--cccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCc--hhhcccccccc---
Q 046314 756 YLYINRCKRLKRV--STSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPH--LLSHLVSLHAS--- 828 (1137)
Q Consensus 756 ~L~L~~~~~l~~l--p~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~--~l~~l~~L~~~--- 828 (1137)
.|++++|.+.... |..+.++++|++|++++|......+ .+..+++|+.|++++|.+...+. .+..+++|+.+
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 5555555443322 3444445555555555544333222 24445555555555554443321 22333333222
Q ss_pred ----------ccCCCCCCCEEeecCCCCC--CcccccCCCCCCCEEEccCCCCCcC-C-CCCCcccccceeccccccccc
Q 046314 829 ----------LLSGLSSLNWLNLNNCALT--AIPEEIGCLPSLEWLELRGNNFESL-P-SIPELPPSLKWLQASNCKRLQ 894 (1137)
Q Consensus 829 ----------~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~l-p-~~~~l~~~L~~L~l~~c~~L~ 894 (1137)
.+.++++|++|+|++|.++ .+|..+..+++|+.|+|++|+++.+ | .+..++ +|+.|++++|+.-.
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKS 508 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc-CCCEEeCCCCcCCC
Confidence 3567899999999999997 3899999999999999999999988 4 778887 99999999985433
Q ss_pred cCCCC---CCCcceeeccccc
Q 046314 895 FLPEI---PSRPEELDASLLQ 912 (1137)
Q Consensus 895 ~lp~l---p~~L~~L~~~~c~ 912 (1137)
..|.. .++|+.|++++++
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHHHhhcccCCcEEEecCCc
Confidence 33332 2578888888764
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.1e-25 Score=262.79 Aligned_cols=305 Identities=15% Similarity=0.148 Sum_probs=238.7
Q ss_pred CCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCC-CC-cccccceeecccCCchhhh
Q 046314 552 NMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPE-NF-KPKNLIELNLPFSKIVQIW 629 (1137)
Q Consensus 552 ~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~ 629 (1137)
.+++|+.|+++++ ....+|..+..-.++|++|++++|.++.+|. .+ .+++|++|+|++|.+..++
T Consensus 43 ~l~~l~~l~l~~~-------------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-------------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESC-------------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCC-------------chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC
Confidence 4578888888765 3456666543322478999999988888776 34 7888999999998888775
Q ss_pred hhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCC
Q 046314 630 EEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFV 708 (1137)
Q Consensus 630 ~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~ 708 (1137)
... +..+++|++|+|++|.+....+. +..+++|++|++++|......|..+..+++|+.|++++|.. ..++ ...++
T Consensus 110 ~~~-~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~l~ 186 (390)
T 3o6n_A 110 PHV-FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD-LSLIP 186 (390)
T ss_dssp TTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCC-GGGCT
T ss_pred HHH-hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cccc-ccccc
Confidence 432 23445899999999887644444 57888999999998877766677788889999999988753 3332 12377
Q ss_pred CCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEeccccccc
Q 046314 709 SPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLN 788 (1137)
Q Consensus 709 ~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 788 (1137)
+|+.|+++++. +..++ ...+++.|++++|.+..+|..+ +++|+.|++++|.+.+. ..+..+++|++|++++|..
T Consensus 187 ~L~~L~l~~n~-l~~~~-~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 187 SLFHANVSYNL-LSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp TCSEEECCSSC-CSEEE-CCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ccceeeccccc-ccccC-CCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcC
Confidence 88888888753 33332 2347899999999999887644 57999999999987764 5688999999999999988
Q ss_pred ccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCC
Q 046314 789 LEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNN 868 (1137)
Q Consensus 789 ~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 868 (1137)
....|..+..+++|+.|++++|.++.+|.. +..+++|++|+|++|.++.+|..+..+++|+.|+|++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLVALNLY-----------GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCCEEECS-----------SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCcChhHccccccCCEEECCCCcCcccCcc-----------cCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 888888999999999999999999887653 346789999999999999999888889999999999999
Q ss_pred CCcCCCCCCcccccceecccccc
Q 046314 869 FESLPSIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 869 l~~lp~~~~l~~~L~~L~l~~c~ 891 (1137)
++.+| +..++ +|+.|++++|+
T Consensus 330 i~~~~-~~~~~-~L~~L~l~~N~ 350 (390)
T 3o6n_A 330 IVTLK-LSTHH-TLKNLTLSHND 350 (390)
T ss_dssp CCCCC-CCTTC-CCSEEECCSSC
T ss_pred cceeC-chhhc-cCCEEEcCCCC
Confidence 99886 55666 88999998875
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.2e-26 Score=276.35 Aligned_cols=347 Identities=16% Similarity=0.180 Sum_probs=253.6
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecC-CCCCCCCCCceEEEEecCCCCCC-CCCC-
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFP-DGLDYLPEKLKYLHLHKYPLRTL-PENF- 610 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp-~~l~~l~~~L~~L~l~~~~l~~l-p~~~- 610 (1137)
.+|++......++...+ ++|+.|++++|. ...++ ..+..++ +|++|++++|.++.+ |..+
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~-------------i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~ 66 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTTILNISQNY-------------ISELWTSDILSLS-KLRILIISHNRIQYLDISVFK 66 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCSEEECCSSC-------------CCCCCHHHHTTCT-TCCEEECCSSCCCEEEGGGGT
T ss_pred eEecCCCCccccccccc---ccccEEECCCCc-------------ccccChhhccccc-cccEEecCCCccCCcChHHhh
Confidence 35566554445555444 799999998875 22333 3455564 899999999999988 4455
Q ss_pred cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCC-ccCC-CCCCCcccEeeccCCCCccccCccccCCCcC-
Q 046314 611 KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLI-RIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHL- 687 (1137)
Q Consensus 611 ~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~-~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L- 687 (1137)
.+++|++|+|++|+++.++.. .+++|++|+|++|.+.. .+|. ++.+++|++|++++|.... ..+..+++|
T Consensus 67 ~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~ 139 (520)
T 2z7x_B 67 FNQELEYLDLSHNKLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLN 139 (520)
T ss_dssp TCTTCCEEECCSSCCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSC
T ss_pred cccCCCEEecCCCceeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccce
Confidence 899999999999999988765 45599999999999876 4554 8999999999999987654 457778888
Q ss_pred -ceEeccCCcC--cccCCCCCC---------------------------CCCCceEeccCCc-------------cCCCC
Q 046314 688 -SLLCFQGCKN--LRSFPSNLH---------------------------FVSPVNIDCSFCV-------------NLTEF 724 (1137)
Q Consensus 688 -~~L~L~~c~~--l~~lp~~~~---------------------------l~~L~~L~ls~c~-------------~l~~~ 724 (1137)
+.|++++|.. ....|..+. +.+|+.|++++|. .+..+
T Consensus 140 L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l 219 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219 (520)
T ss_dssp EEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGC
T ss_pred eeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccc
Confidence 9999999876 344443321 3445555555542 00000
Q ss_pred Cc-----------------------ccCCCcEEEecCCCcc-ccCccc-----cCCCCCcEEeccccccccccc-cc---
Q 046314 725 PR-----------------------ISGNITKLNLCDTAIE-EVPSSV-----ECLTNLEYLYINRCKRLKRVS-TS--- 771 (1137)
Q Consensus 725 ~~-----------------------~~~~L~~L~L~~~~i~-~lp~~i-----~~l~~L~~L~L~~~~~l~~lp-~~--- 771 (1137)
+. ...+|++|++++|.+. .+|..+ +.+++|+.+++++|.+ .+| ..
T Consensus 220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~ 297 (520)
T 2z7x_B 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYE 297 (520)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHH
T ss_pred cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhc
Confidence 00 0126788888888877 778777 7777777777776665 333 11
Q ss_pred ----------------------ccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccc
Q 046314 772 ----------------------ICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASL 829 (1137)
Q Consensus 772 ----------------------l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~ 829 (1137)
...+++|++|++++|......|..+..+++|+.|++++|.+..++.... .
T Consensus 298 ~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--------~ 369 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE--------M 369 (520)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH--------H
T ss_pred ccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH--------H
Confidence 1578889999999988888788888899999999999998886543111 2
Q ss_pred cCCCCCCCEEeecCCCCCC-cccc-cCCCCCCCEEEccCCCCCc-CC-CCCCcccccceeccccccccccCCCC---CCC
Q 046314 830 LSGLSSLNWLNLNNCALTA-IPEE-IGCLPSLEWLELRGNNFES-LP-SIPELPPSLKWLQASNCKRLQFLPEI---PSR 902 (1137)
Q Consensus 830 l~~l~~L~~L~Ls~n~l~~-lp~~-l~~l~~L~~L~Ls~n~l~~-lp-~~~~l~~~L~~L~l~~c~~L~~lp~l---p~~ 902 (1137)
+.++++|++|+|++|.++. +|.. +..+++|++|+|++|.++. +| .+. ++|+.|++++|. +..+|.. .++
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~L~~L~Ls~N~-l~~ip~~~~~l~~ 445 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNK-IKSIPKQVVKLEA 445 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---TTCCEEECCSSC-CCCCCGGGGGCTT
T ss_pred HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc---ccCCEEECCCCc-ccccchhhhcCCC
Confidence 5678999999999999998 8875 7889999999999999964 33 332 499999999985 5567652 468
Q ss_pred cceeecccccccccccc
Q 046314 903 PEELDASLLQKLSKYSY 919 (1137)
Q Consensus 903 L~~L~~~~c~~L~~~~~ 919 (1137)
|+.|++++| .++.++.
T Consensus 446 L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 446 LQELNVASN-QLKSVPD 461 (520)
T ss_dssp CCEEECCSS-CCCCCCT
T ss_pred CCEEECCCC-cCCccCH
Confidence 999999998 5666654
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3.4e-25 Score=264.85 Aligned_cols=317 Identities=20% Similarity=0.226 Sum_probs=252.6
Q ss_pred CCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhh
Q 046314 552 NMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEE 631 (1137)
Q Consensus 552 ~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~ 631 (1137)
.+++|+.|++.++. ...+| ++..+ ++|++|++++|.++.+|+...+++|++|++++|.+..++.
T Consensus 44 ~l~~l~~L~l~~~~-------------i~~l~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~- 107 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-------------IKSID-GVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP- 107 (466)
T ss_dssp HHHTCCEEECCSSC-------------CCCCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred HhccccEEecCCCC-------------CccCc-chhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-
Confidence 35678899987654 33444 35555 4899999999999999884489999999999999998865
Q ss_pred hhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCc
Q 046314 632 KRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPV 711 (1137)
Q Consensus 632 ~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~ 711 (1137)
...+++|++|+|++|.+... +.+..+++|++|++++|... .++ .+..+++|+.|++++ .+..++....+++|+
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~ 180 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLE 180 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCC
T ss_pred --hcCCCCCCEEECCCCCCCCC-hHHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCC--cccCchhhccCCCCC
Confidence 44555999999999986554 45899999999999998644 344 589999999999964 344555544688999
Q ss_pred eEeccCCccCCCCCc--ccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccc
Q 046314 712 NIDCSFCVNLTEFPR--ISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNL 789 (1137)
Q Consensus 712 ~L~ls~c~~l~~~~~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~ 789 (1137)
.|++++|. +..++. ...+|+.|++++|.+..++. ++.+++|+.|++++|.+... ..+..+++|+.|++++|...
T Consensus 181 ~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 181 RLDISSNK-VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp EEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EEECcCCc-CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 99999875 444443 34588999999999988866 78899999999999986653 35788999999999999876
Q ss_pred cccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCC
Q 046314 790 EKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNF 869 (1137)
Q Consensus 790 ~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l 869 (1137)
...+ +..+++|+.|++++|.+..++. +.++++|+.|++++|.+++++. +..+++|+.|+|++|++
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~------------~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP------------LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG------------GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCC
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc------------ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcC
Confidence 5444 8889999999999999887764 4568899999999999998776 78899999999999999
Q ss_pred CcCCCCCCcccccceeccccccccccCCCC--CCCcceeeccccc
Q 046314 870 ESLPSIPELPPSLKWLQASNCKRLQFLPEI--PSRPEELDASLLQ 912 (1137)
Q Consensus 870 ~~lp~~~~l~~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c~ 912 (1137)
+.++.+..++ +|+.|++++|+ +..++.+ .++|+.|++.+|.
T Consensus 322 ~~~~~~~~l~-~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 322 SDISPVSSLT-KLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SCCGGGGGCT-TCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC
T ss_pred CCchhhccCc-cCCEeECCCCc-cCCchhhccCCCCCEEeCCCCc
Confidence 9887777777 99999999884 4444443 3577777777764
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.6e-25 Score=275.98 Aligned_cols=305 Identities=15% Similarity=0.153 Sum_probs=231.5
Q ss_pred CCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCC-CC-cccccceeecccCCchhhh
Q 046314 552 NMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPE-NF-KPKNLIELNLPFSKIVQIW 629 (1137)
Q Consensus 552 ~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~ 629 (1137)
.+++++.|+++++ ....+|..+..-.++|++|++++|.++.+|+ .+ .+.+|++|+|++|.+..++
T Consensus 49 ~l~~l~~l~l~~~-------------~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNS-------------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSC-------------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCC-------------CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC
Confidence 3567788888665 3455666543322478888888888887765 34 7888888888888888775
Q ss_pred hhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCC
Q 046314 630 EEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFV 708 (1137)
Q Consensus 630 ~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~ 708 (1137)
+.. +..+++|++|+|++|.+....+. ++.+++|++|+|++|......|..++++++|+.|+|++|. +..++ ...++
T Consensus 116 ~~~-~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~l~ 192 (597)
T 3oja_B 116 PHV-FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIP 192 (597)
T ss_dssp TTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC-GGGCT
T ss_pred HHH-HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC-hhhhh
Confidence 543 23445888888888877655555 5788888888888887777667778888888888888865 33333 12367
Q ss_pred CCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEeccccccc
Q 046314 709 SPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLN 788 (1137)
Q Consensus 709 ~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 788 (1137)
+|+.|+++++ .+..++ ...+|+.|++++|.+..+|..+ .++|+.|+|++|.+.+ +..+..+++|+.|+|++|..
T Consensus 193 ~L~~L~l~~n-~l~~l~-~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 193 SLFHANVSYN-LLSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 266 (597)
T ss_dssp TCSEEECCSS-CCSEEE-CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCC
T ss_pred hhhhhhcccC-cccccc-CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCcc
Confidence 7888888875 333332 3347889999999988887654 3689999999988776 36688889999999999988
Q ss_pred ccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCC
Q 046314 789 LEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNN 868 (1137)
Q Consensus 789 ~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 868 (1137)
....|..+..+++|+.|++++|.+..+|.. +..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.
T Consensus 267 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----------~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 267 EKIMYHPFVKMQRLERLYISNNRLVALNLY-----------GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CEEESGGGTTCSSCCEEECTTSCCCEEECS-----------SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCCHHHhcCccCCCEEECCCCCCCCCCcc-----------cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 888888899999999999999988887653 345788999999999999998888888999999999999
Q ss_pred CCcCCCCCCcccccceecccccc
Q 046314 869 FESLPSIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 869 l~~lp~~~~l~~~L~~L~l~~c~ 891 (1137)
++.+| +..++ +|+.|++++|+
T Consensus 336 l~~~~-~~~~~-~L~~L~l~~N~ 356 (597)
T 3oja_B 336 IVTLK-LSTHH-TLKNLTLSHND 356 (597)
T ss_dssp CCCCC-CCTTC-CCSEEECCSSC
T ss_pred CCCcC-hhhcC-CCCEEEeeCCC
Confidence 88876 55566 88899998876
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.3e-24 Score=257.49 Aligned_cols=304 Identities=22% Similarity=0.257 Sum_probs=216.4
Q ss_pred CcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhc
Q 046314 556 LRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYV 635 (1137)
Q Consensus 556 Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~ 635 (1137)
|+.|+++++. ...+|. .|++|++|++++|.++.+|.. +.+|++|++++|++..++...
T Consensus 73 l~~L~l~~~~-------------l~~lp~----~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~--- 130 (454)
T 1jl5_A 73 AHELELNNLG-------------LSSLPE----LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--- 130 (454)
T ss_dssp CSEEECTTSC-------------CSCCCS----CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC---
T ss_pred CCEEEecCCc-------------cccCCC----CcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCC---
Confidence 4777776653 233443 356899999999999998864 488999999999988765321
Q ss_pred cccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEec
Q 046314 636 KAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDC 715 (1137)
Q Consensus 636 ~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~l 715 (1137)
++|++|++++|.+.. +|.+..+++|++|++++|... .+|..+ .+|++|++++|. +..+|....+++|+.|++
T Consensus 131 --~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 --PLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQ-LEELPELQNLPFLTAIYA 202 (454)
T ss_dssp --TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSC-CSSCCCCTTCTTCCEEEC
T ss_pred --CCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCc-CCcCccccCCCCCCEEEC
Confidence 389999999998765 778999999999999998654 466543 589999999874 556886446899999999
Q ss_pred cCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccc
Q 046314 716 SFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSE 795 (1137)
Q Consensus 716 s~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~ 795 (1137)
++|. +..+|....+|++|++++|.+..+|. ++.+++|++|++++|.+.+ +|.. +++|+.|++++|.... +|..
T Consensus 203 ~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 203 DNNS-LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp CSSC-CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC
T ss_pred CCCc-CCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc
Confidence 9874 56688877899999999999999985 8999999999999998765 4542 4789999999987554 5543
Q ss_pred cCCCCCcceecccCccccccCchhhccccccc--c---ccCCC-CCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCC
Q 046314 796 LGNLKSFQYIGAHGSTISQLPHLLSHLVSLHA--S---LLSGL-SSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNF 869 (1137)
Q Consensus 796 l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~--~---~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l 869 (1137)
+++|+.|++++|.++.+|.....++.|.. . .+..+ ++|++|++++|.++++|.. +++|+.|++++|++
T Consensus 276 ---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHL 349 (454)
T ss_dssp ---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred ---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCcc
Confidence 47899999999998876642222222110 0 11122 3666666666666666543 45666666666666
Q ss_pred CcCCCCCCcccccceeccccccccccCCCCCCCccee
Q 046314 870 ESLPSIPELPPSLKWLQASNCKRLQFLPEIPSRPEEL 906 (1137)
Q Consensus 870 ~~lp~~~~l~~~L~~L~l~~c~~L~~lp~lp~~L~~L 906 (1137)
+.+|. .+ ++|+.|++++|+ +..+|.+|.++..|
T Consensus 350 ~~lp~--~l-~~L~~L~L~~N~-l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 350 AEVPE--LP-QNLKQLHVEYNP-LREFPDIPESVEDL 382 (454)
T ss_dssp SCCCC--CC-TTCCEEECCSSC-CSSCCCCCTTCCEE
T ss_pred ccccc--hh-hhccEEECCCCC-CCcCCCChHHHHhh
Confidence 66665 22 366666666553 44445555544444
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.1e-24 Score=256.11 Aligned_cols=288 Identities=17% Similarity=0.136 Sum_probs=210.2
Q ss_pred ccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCchhh
Q 046314 549 AFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQI 628 (1137)
Q Consensus 549 ~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l 628 (1137)
.|..+++|++|++++|.. ..+| +..+ ++|++|++++|.++.+| ...+++|++|++++|+++.+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l-------------~~~~--~~~l-~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNI-------------TTLD--LSQN-TNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL 121 (457)
T ss_dssp TGGGCTTCSEEECCSSCC-------------SCCC--CTTC-TTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC
T ss_pred hhcccCCCCEEEccCCcC-------------CeEc--cccC-CCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee
Confidence 577888888888877642 2233 4445 47888888888888876 33788888888888888876
Q ss_pred hhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCC
Q 046314 629 WEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFV 708 (1137)
Q Consensus 629 ~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~ 708 (1137)
+ ...+++|++|++++|.+.. + +++.+++|++|++++|...+.+ .++.+++|+.|++++|. +..+| ...++
T Consensus 122 ~----~~~l~~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~-l~~l~ 191 (457)
T 3bz5_A 122 D----VSQNPLLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD-VSQNK 191 (457)
T ss_dssp C----CTTCTTCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC-CTTCT
T ss_pred c----CCCCCcCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec-cccCC
Confidence 3 3344588888888887655 3 3778888888888888666665 47788888888888864 45566 33477
Q ss_pred CCceEeccCCccCCCCC-cccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCC-------CCcE
Q 046314 709 SPVNIDCSFCVNLTEFP-RISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLK-------SLIW 780 (1137)
Q Consensus 709 ~L~~L~ls~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~-------~L~~ 780 (1137)
+|+.|++++|. ++.++ ....+|+.|++++|.+..+| ++.+++|+.|++++|.+.+..+..+.+++ +|+.
T Consensus 192 ~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~ 268 (457)
T 3bz5_A 192 LLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE 268 (457)
T ss_dssp TCCEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCCEEECcCCc-CCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE
Confidence 88888888764 33332 23457888888888888887 77888888888888887776555555554 5667
Q ss_pred ecccccccccccccccCCCCCcceecccCccc-cccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCC
Q 046314 781 LCLNECLNLEKSWSELGNLKSFQYIGAHGSTI-SQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSL 859 (1137)
Q Consensus 781 L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i-~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 859 (1137)
|++++|...+.+| ++.+++|+.|++++|.. ..+|.. ...|+.+.++++++|++|++++|+++.++ +..+++|
T Consensus 269 L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L 341 (457)
T 3bz5_A 269 IDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKL 341 (457)
T ss_dssp CCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTC
T ss_pred EECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CCcceEechhhcccCCEEECCCCcccccc--cccCCcC
Confidence 7777777666665 46778888888888863 455543 34455556788888888888888888874 8888888
Q ss_pred CEEEccCCCCCcCC
Q 046314 860 EWLELRGNNFESLP 873 (1137)
Q Consensus 860 ~~L~Ls~n~l~~lp 873 (1137)
+.|++++|+++.+|
T Consensus 342 ~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 342 KSLSCVNAHIQDFS 355 (457)
T ss_dssp SEEECCSSCCCBCT
T ss_pred cEEECCCCCCCCcc
Confidence 88888888888754
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.4e-24 Score=255.36 Aligned_cols=263 Identities=19% Similarity=0.204 Sum_probs=212.4
Q ss_pred CCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhh
Q 046314 553 MSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEK 632 (1137)
Q Consensus 553 l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~ 632 (1137)
+++|+.|++++|. ...+| ..+++|++|++++|.++.+|....+++|++|++++|+++.++...
T Consensus 110 ~~~L~~L~l~~n~-------------l~~l~----~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~ 172 (454)
T 1jl5_A 110 PQSLKSLLVDNNN-------------LKALS----DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 172 (454)
T ss_dssp CTTCCEEECCSSC-------------CSCCC----SCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC
T ss_pred cCCCcEEECCCCc-------------cCccc----CCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc
Confidence 3688888887764 22233 234689999999999999996448999999999999998875432
Q ss_pred hhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCce
Q 046314 633 RYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVN 712 (1137)
Q Consensus 633 ~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~ 712 (1137)
. +|++|++++|.+.. +|.+..+++|++|++++|.... +|... ++|+.|++++|. +..+|....+++|+.
T Consensus 173 ---~--~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~-l~~lp~~~~l~~L~~ 241 (454)
T 1jl5_A 173 ---P--SLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNI-LEELPELQNLPFLTT 241 (454)
T ss_dssp ---T--TCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSC-CSSCCCCTTCTTCCE
T ss_pred ---c--cccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCc-CCcccccCCCCCCCE
Confidence 3 89999999998655 7789999999999999986543 55432 589999999984 558886556899999
Q ss_pred EeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccccc
Q 046314 713 IDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKS 792 (1137)
Q Consensus 713 L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~ 792 (1137)
|++++| .+..+|....+|+.|++++|.+..+|.. +++|+.|++++|.+.+ +|.. .++|+.|++++|.... +
T Consensus 242 L~l~~N-~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i 312 (454)
T 1jl5_A 242 IYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-L 312 (454)
T ss_dssp EECCSS-CCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-E
T ss_pred EECCCC-cCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-c
Confidence 999996 5667888888999999999999998874 4889999999998765 2221 2689999999997654 2
Q ss_pred ccccCCC-CCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCc
Q 046314 793 WSELGNL-KSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 793 ~~~l~~l-~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
..+ ++|+.|++++|.+..+|.. +++|+.|++++|.++.+|. .+++|++|+|++|+++.
T Consensus 313 ----~~~~~~L~~L~Ls~N~l~~lp~~--------------~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 313 ----CDLPPSLEELNVSNNKLIELPAL--------------PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ----CCCCTTCCEEECCSSCCSCCCCC--------------CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS
T ss_pred ----cCCcCcCCEEECCCCcccccccc--------------CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCc
Confidence 233 5899999999999988752 5889999999999999998 57999999999999998
Q ss_pred CC
Q 046314 872 LP 873 (1137)
Q Consensus 872 lp 873 (1137)
+|
T Consensus 372 l~ 373 (454)
T 1jl5_A 372 FP 373 (454)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=260.54 Aligned_cols=304 Identities=16% Similarity=0.140 Sum_probs=249.8
Q ss_pred ceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCC
Q 046314 593 LKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNC 671 (1137)
Q Consensus 593 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~ 671 (1137)
-+.++.+++.++.+|..+ +.+|+.|+|++|++..+... .+..+++|++|+|++|.+....|. +..+++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 357888899999999866 46899999999999988542 244556999999999998777665 899999999999999
Q ss_pred CCccccCccccCCCcCceEeccCCcCcccCCCCCC-CCCCceEeccCCccCCCCCc---ccCCCcEEEecCCCccccCcc
Q 046314 672 TNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLH-FVSPVNIDCSFCVNLTEFPR---ISGNITKLNLCDTAIEEVPSS 747 (1137)
Q Consensus 672 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~ls~c~~l~~~~~---~~~~L~~L~L~~~~i~~lp~~ 747 (1137)
......+..+.++++|++|+|++|......|..+. +.+|+.|+++++......+. ...+|+.|++++|.+..+|..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 76555455689999999999999877666666664 89999999998754332232 345889999999999999865
Q ss_pred -ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhcccccc
Q 046314 748 -VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLH 826 (1137)
Q Consensus 748 -i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~ 826 (1137)
+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.....++.......+|+.|++++|.++.+|...
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~------- 243 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA------- 243 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH-------
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH-------
Confidence 889999999999999998888888999999999999999999888888777789999999999999888532
Q ss_pred ccccCCCCCCCEEeecCCCCCCcc-cccCCCCCCCEEEccCCCCCcCC--CCCCcccccceeccccccccccCCC-C---
Q 046314 827 ASLLSGLSSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCKRLQFLPE-I--- 899 (1137)
Q Consensus 827 ~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~~L~~lp~-l--- 899 (1137)
+.++++|+.|+|++|.++.++ ..+..+++|+.|+|++|+++.++ .+..++ +|+.|+|++|. ++.+|. .
T Consensus 244 ---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~-l~~~~~~~~~~ 318 (477)
T 2id5_A 244 ---VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN-YLRVLNVSGNQ-LTTLEESVFHS 318 (477)
T ss_dssp ---HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT-TCCEEECCSSC-CSCCCGGGBSC
T ss_pred ---hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc-cCCEEECCCCc-CceeCHhHcCC
Confidence 567899999999999999865 46889999999999999999875 677888 99999999984 444443 1
Q ss_pred CCCcceeeccc
Q 046314 900 PSRPEELDASL 910 (1137)
Q Consensus 900 p~~L~~L~~~~ 910 (1137)
.++|+.|++.+
T Consensus 319 l~~L~~L~l~~ 329 (477)
T 2id5_A 319 VGNLETLILDS 329 (477)
T ss_dssp GGGCCEEECCS
T ss_pred CcccCEEEccC
Confidence 13455555543
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=9.4e-25 Score=254.87 Aligned_cols=297 Identities=15% Similarity=0.084 Sum_probs=229.9
Q ss_pred CCceEEEEecCCCCCCCCCC--cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEee
Q 046314 591 EKLKYLHLHKYPLRTLPENF--KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERIN 667 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~ 667 (1137)
++|++|+++++.++.+|..+ .+++|++|+|++|.+..++.. .+..+++|++|+|++|.+....|. +..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 48999999999999999875 789999999999999887652 234455999999999998777776 78999999999
Q ss_pred ccCCCCccccCcc-ccCCCcCceEeccCCcCcccCCCCC-CCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccC
Q 046314 668 LWNCTNLAWVPSS-IQNFNHLSLLCFQGCKNLRSFPSNL-HFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVP 745 (1137)
Q Consensus 668 L~~~~~l~~~p~~-i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp 745 (1137)
|++|... .+|.. +.++++|++|++++|......|..+ .+++|+.|+++++..-..-...+.+|+.|++++|.+..++
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 9999655 55554 6899999999999986554445445 4889999999987543332345668899999999887654
Q ss_pred ccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccc
Q 046314 746 SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSL 825 (1137)
Q Consensus 746 ~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L 825 (1137)
..++|+.|++++|.+... |.. ..++|+.|++++|..... ..+..+++|+.|++++|.+..++..
T Consensus 203 ----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~------- 266 (390)
T 3o6n_A 203 ----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH------- 266 (390)
T ss_dssp ----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG-------
T ss_pred ----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh-------
Confidence 346899999999886554 332 357899999999876653 5688889999999999988866321
Q ss_pred cccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC-CCCCcccccceeccccccccccCC-CCCCCc
Q 046314 826 HASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP-SIPELPPSLKWLQASNCKRLQFLP-EIPSRP 903 (1137)
Q Consensus 826 ~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c~~L~~lp-~lp~~L 903 (1137)
.+.++++|++|+|++|.++.+|..+..+++|+.|+|++|+++.+| .+..++ +|+.|++++|+. ..++ ...++|
T Consensus 267 ---~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~-~L~~L~L~~N~i-~~~~~~~~~~L 341 (390)
T 3o6n_A 267 ---PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD-RLENLYLDHNSI-VTLKLSTHHTL 341 (390)
T ss_dssp ---GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHT-TCSEEECCSSCC-CCCCCCTTCCC
T ss_pred ---HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccC-cCCEEECCCCcc-ceeCchhhccC
Confidence 256688999999999999998888888999999999999998888 666666 899999998863 3332 223445
Q ss_pred ceeeccc
Q 046314 904 EELDASL 910 (1137)
Q Consensus 904 ~~L~~~~ 910 (1137)
+.|++++
T Consensus 342 ~~L~l~~ 348 (390)
T 3o6n_A 342 KNLTLSH 348 (390)
T ss_dssp SEEECCS
T ss_pred CEEEcCC
Confidence 5554443
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-24 Score=268.05 Aligned_cols=301 Identities=15% Similarity=0.070 Sum_probs=247.0
Q ss_pred CCceEEEEecCCCCCCCCCC--cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEee
Q 046314 591 EKLKYLHLHKYPLRTLPENF--KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERIN 667 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~ 667 (1137)
.+++.|++++|.+..+|..+ .+++|++|+|++|.+..++.. .+..+++|++|+|++|.+....|. ++.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 48999999999999999875 789999999999999988653 234455999999999998877776 69999999999
Q ss_pred ccCCCCccccCccccCCCcCceEeccCCcCcccCCCCC-CCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCc
Q 046314 668 LWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNL-HFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPS 746 (1137)
Q Consensus 668 L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~ 746 (1137)
|++|......+..++++++|++|+|++|......|..+ .+++|+.|++++|..-..-+..+.+|+.|++++|.+..++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~- 208 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA- 208 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE-
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc-
Confidence 99997664444456999999999999987655555555 4899999999997544333356679999999999887654
Q ss_pred cccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhcccccc
Q 046314 747 SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLH 826 (1137)
Q Consensus 747 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~ 826 (1137)
..++|+.|++++|.+....+ .+ .++|+.|+|++|.... +..+..+++|+.|++++|.+..++..
T Consensus 209 ---~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~-------- 272 (597)
T 3oja_B 209 ---IPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH-------- 272 (597)
T ss_dssp ---CCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG--------
T ss_pred ---CCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH--------
Confidence 45689999999998754433 22 3689999999998765 46789999999999999999876331
Q ss_pred ccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC-CCCCcccccceeccccccccccCCCCCCCcce
Q 046314 827 ASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP-SIPELPPSLKWLQASNCKRLQFLPEIPSRPEE 905 (1137)
Q Consensus 827 ~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c~~L~~lp~lp~~L~~ 905 (1137)
.+.++++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+| .+..++ +|+.|+|++|+....-....++|+.
T Consensus 273 --~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~L~~ 349 (597)
T 3oja_B 273 --PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD-RLENLYLDHNSIVTLKLSTHHTLKN 349 (597)
T ss_dssp --GGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHT-TCSEEECCSSCCCCCCCCTTCCCSE
T ss_pred --HhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCC-CCCEEECCCCCCCCcChhhcCCCCE
Confidence 256789999999999999999999999999999999999999999 677777 9999999998754333345678999
Q ss_pred eeccccc
Q 046314 906 LDASLLQ 912 (1137)
Q Consensus 906 L~~~~c~ 912 (1137)
|++++++
T Consensus 350 L~l~~N~ 356 (597)
T 3oja_B 350 LTLSHND 356 (597)
T ss_dssp EECCSSC
T ss_pred EEeeCCC
Confidence 9998764
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3.7e-23 Score=245.37 Aligned_cols=305 Identities=17% Similarity=0.166 Sum_probs=235.5
Q ss_pred cccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCchh
Q 046314 548 RAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQ 627 (1137)
Q Consensus 548 ~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~ 627 (1137)
..+.++++|++|+++++. ...+| ++..++ +|++|++++|.++.+| ...+++|++|++++|.++.
T Consensus 36 ~~~~~l~~L~~L~Ls~n~-------------l~~~~-~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSS-------------ITDMT-GIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp EEHHHHTTCCEEECCSSC-------------CCCCT-TGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC
T ss_pred cChhHcCCCCEEEccCCC-------------cccCh-hhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce
Confidence 357788999999998874 23344 566664 8999999999999997 4488999999999999998
Q ss_pred hhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCC
Q 046314 628 IWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHF 707 (1137)
Q Consensus 628 l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l 707 (1137)
++ ...+++|++|++++|.+.. +| ++.+++|++|++++|.... ++ ++.+++|+.|++++|..+..++ ...+
T Consensus 100 ~~----~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l 169 (457)
T 3bz5_A 100 LD----VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQ 169 (457)
T ss_dssp CC----CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTC
T ss_pred ee----cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccC
Confidence 73 3345699999999998765 44 8999999999999997655 43 8899999999999998877773 3358
Q ss_pred CCCceEeccCCccCCCCC-cccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEeccccc
Q 046314 708 VSPVNIDCSFCVNLTEFP-RISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNEC 786 (1137)
Q Consensus 708 ~~L~~L~ls~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~ 786 (1137)
++|+.|++++|. ++.+| ....+|+.|++++|.+..++ ++.+++|+.|++++|.+.+ +| +..+++|+.|++++|
T Consensus 170 ~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 170 TQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp TTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred CcCCEEECCCCc-cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence 899999999874 45555 23447899999999999884 8889999999999998877 56 888999999999999
Q ss_pred ccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC-ccc--------ccCCCC
Q 046314 787 LNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-IPE--------EIGCLP 857 (1137)
Q Consensus 787 ~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-lp~--------~l~~l~ 857 (1137)
...... ++.+++|+.|++++|.++.+.-+- ...+....+.++++|+.|+|++|...+ +|. .+..++
T Consensus 244 ~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~--n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~ 318 (457)
T 3bz5_A 244 PLTELD---VSTLSKLTTLHCIQTDLLEIDLTH--NTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP 318 (457)
T ss_dssp CCSCCC---CTTCTTCCEEECTTCCCSCCCCTT--CTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred cCCCcC---HHHCCCCCEEeccCCCCCEEECCC--CccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcc
Confidence 766543 456677777777777776554321 111222234567788888888875433 332 256778
Q ss_pred CCCEEEccCCCCCcCCCCCCcccccceecccccc
Q 046314 858 SLEWLELRGNNFESLPSIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 858 ~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~c~ 891 (1137)
+|+.|+|++|+++.++ +..++ +|+.|++++++
T Consensus 319 ~L~~L~L~~N~l~~l~-l~~l~-~L~~L~l~~N~ 350 (457)
T 3bz5_A 319 KLVYLYLNNTELTELD-VSHNT-KLKSLSCVNAH 350 (457)
T ss_dssp TCCEEECTTCCCSCCC-CTTCT-TCSEEECCSSC
T ss_pred cCCEEECCCCcccccc-cccCC-cCcEEECCCCC
Confidence 9999999999999885 77777 89999998864
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=2.8e-23 Score=258.86 Aligned_cols=360 Identities=20% Similarity=0.185 Sum_probs=213.5
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCC-CCCCCCCceEEEEecCCCCCCCCC-C-
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDG-LDYLPEKLKYLHLHKYPLRTLPEN-F- 610 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~-l~~l~~~L~~L~l~~~~l~~lp~~-~- 610 (1137)
.+|++.+....+++.+|.++++|++|++++|. ...+|++ +..+ ++|++|++++|+++.+|.. |
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-------------i~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-------------IQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCC-------------CCEECTTTTTTC-TTCCEEECTTCCCCEECGGGGT
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-------------CCCcChhHhcCC-CCCCEEEccCCcCCCCCHHHhc
Confidence 56777777667888899999999999998774 4456554 4555 4899999999999988865 4
Q ss_pred cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCc-cCC-CCCCCcccEeeccCCCCccccCccccCCCcCc
Q 046314 611 KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIR-IPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLS 688 (1137)
Q Consensus 611 ~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~-~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~ 688 (1137)
++.+|++|+|++|+++.++... +..+++|++|+|++|.+... .|. ++.+++|++|+|++|......+..+..+.+++
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCCEEECCCCcCCCCChhh-hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 7899999999999998876532 34455899999999987543 444 57889999999998866554444433322221
Q ss_pred ---------------------------eEeccCCcCc------------------------------cc-----------
Q 046314 689 ---------------------------LLCFQGCKNL------------------------------RS----------- 700 (1137)
Q Consensus 689 ---------------------------~L~L~~c~~l------------------------------~~----------- 700 (1137)
.|++.++... ..
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence 1222111000 00
Q ss_pred ----------------------------------------CCCCCCCCCCceEeccCCccCC------------------
Q 046314 701 ----------------------------------------FPSNLHFVSPVNIDCSFCVNLT------------------ 722 (1137)
Q Consensus 701 ----------------------------------------lp~~~~l~~L~~L~ls~c~~l~------------------ 722 (1137)
++......+|+.|++.+|..-.
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~ 360 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 360 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence 0000001234445444432110
Q ss_pred --CCC--cccCCCcEEEecCCCcccc---CccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccc-c
Q 046314 723 --EFP--RISGNITKLNLCDTAIEEV---PSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSW-S 794 (1137)
Q Consensus 723 --~~~--~~~~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~ 794 (1137)
..+ ....+|+.|++++|.+... +..+..+.+|+.|++..|.... .+..+..+++|+.+++.+|......+ .
T Consensus 361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccc
Confidence 000 1234677778877776532 3334455556666655554322 23334445555555554444333222 2
Q ss_pred ccCCCCCcceecccCccccccCch-hhccccc--------------cccccCCCCCCCEEeecCCCCCCc-ccccCCCCC
Q 046314 795 ELGNLKSFQYIGAHGSTISQLPHL-LSHLVSL--------------HASLLSGLSSLNWLNLNNCALTAI-PEEIGCLPS 858 (1137)
Q Consensus 795 ~l~~l~~L~~L~l~~n~i~~lp~~-l~~l~~L--------------~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~ 858 (1137)
.+..+++|+.++++.|.+..++.. +..++.+ ....+..+++|++|+|++|.++++ |..+.++++
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 344444555555555444433221 1111111 011356678888888888888874 567788888
Q ss_pred CCEEEccCCCCCcCC--CCCCcccccceeccccccccccCCC----CCCCcceeeccc
Q 046314 859 LEWLELRGNNFESLP--SIPELPPSLKWLQASNCKRLQFLPE----IPSRPEELDASL 910 (1137)
Q Consensus 859 L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~ 910 (1137)
|++|+|++|+|+.+| .+..++ +|+.|+|++|+.....|+ +|++|+.|++++
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCT-TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCEEECCCCcCCCCChhHHhCCC-CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 888888888888877 566777 888888888764444343 345666666654
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=5.8e-23 Score=234.04 Aligned_cols=283 Identities=16% Similarity=0.172 Sum_probs=151.2
Q ss_pred CCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCC-CC-cccccceeecccCCchhhhhhh
Q 046314 555 SLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPE-NF-KPKNLIELNLPFSKIVQIWEEK 632 (1137)
Q Consensus 555 ~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~~~ 632 (1137)
+|+.++++++. ...+|..+ +++|++|++++|.++.+++ .+ .+.+|++|+|++|++..+...
T Consensus 34 ~l~~l~~~~~~-------------l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 96 (332)
T 2ft3_A 34 HLRVVQCSDLG-------------LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK- 96 (332)
T ss_dssp ETTEEECCSSC-------------CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-
T ss_pred cCCEEECCCCC-------------ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-
Confidence 56666665542 33455443 2467777777777776654 33 667777777777777665221
Q ss_pred hhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcc--cCCCCCCCCCC
Q 046314 633 RYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLR--SFPSNLHFVSP 710 (1137)
Q Consensus 633 ~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~--~lp~~~~l~~L 710 (1137)
.+..+++|++|+|++|.+....+.+. ++|++|++++|......+..+.++++|+.|++++|..-. ..|..+...
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-- 172 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-- 172 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--
T ss_pred HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--
Confidence 12333477777777776543222222 677777777765554444456677777777777654321 222222111
Q ss_pred ceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccc
Q 046314 711 VNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLE 790 (1137)
Q Consensus 711 ~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~ 790 (1137)
+|+.|++++|.+..+|..+. ++|+.|++++|.+.+..+..+.++++|+.|++++|....
T Consensus 173 -------------------~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 173 -------------------KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp -------------------CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred -------------------ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 34445555555555555433 456666666665555555555566666666666655554
Q ss_pred ccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc-ccCC------CCCCCEEE
Q 046314 791 KSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE-EIGC------LPSLEWLE 863 (1137)
Q Consensus 791 ~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~------l~~L~~L~ 863 (1137)
..+..+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.++.+|. .+.. .++|+.|+
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~~lp~~l-----------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLSRVPAGL-----------PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCCBCCTTG-----------GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred CChhHhhCCCCCCEEECCCCcCeecChhh-----------hcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 44445555555555555555555555432 234555555555555555432 1211 24455566
Q ss_pred ccCCCCC--cCC--CCCCcccccceecccccc
Q 046314 864 LRGNNFE--SLP--SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 864 Ls~n~l~--~lp--~~~~l~~~L~~L~l~~c~ 891 (1137)
+++|.+. .++ .+..++ +|+.|++++|+
T Consensus 301 l~~N~~~~~~~~~~~~~~l~-~L~~l~l~~n~ 331 (332)
T 2ft3_A 301 LFNNPVPYWEVQPATFRCVT-DRLAIQFGNYK 331 (332)
T ss_dssp CCSSSSCGGGSCGGGGTTBC-CSTTEEC----
T ss_pred eecCcccccccCcccccccc-hhhhhhccccc
Confidence 6555554 222 334444 55555555543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=1.1e-22 Score=231.60 Aligned_cols=237 Identities=19% Similarity=0.172 Sum_probs=162.8
Q ss_pred ceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccC
Q 046314 639 KLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSF 717 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~ 717 (1137)
+|+.|+|++|.+....|. +..+++|++|+|++|......|..++++++|++|++++|. +..+|..+. .+|+.|++++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~-~~L~~L~l~~ 132 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP-SSLVELRIHD 132 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC-TTCCEEECCS
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc-ccCCEEECCC
Confidence 455555555554433332 4555555555555554444445555555555555555543 334444433 4555555555
Q ss_pred CccCCCCCc----ccCCCcEEEecCCCccc---cCccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccc
Q 046314 718 CVNLTEFPR----ISGNITKLNLCDTAIEE---VPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLE 790 (1137)
Q Consensus 718 c~~l~~~~~----~~~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~ 790 (1137)
+. +..++. ...+|+.|++++|.+.. .|..+..+ +|+.|++++|.+.+ +|..+. ++|++|++++|....
T Consensus 133 n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 133 NR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp SC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC
T ss_pred Cc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc
Confidence 43 222322 23467888888888863 35557777 89999999998655 565543 789999999998887
Q ss_pred ccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCC
Q 046314 791 KSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFE 870 (1137)
Q Consensus 791 ~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 870 (1137)
..+..+..+++|+.|++++|.+..++.. .+..+++|++|+|++|.++.+|..+..+++|+.|+|++|+++
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENG----------SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTT----------GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChh----------HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence 7778899999999999999999887652 245678999999999999999999999999999999999999
Q ss_pred cCC--CCCCc-----ccccceeccccccc
Q 046314 871 SLP--SIPEL-----PPSLKWLQASNCKR 892 (1137)
Q Consensus 871 ~lp--~~~~l-----~~~L~~L~l~~c~~ 892 (1137)
.+| .+... .+.|+.|++.+++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ccChhHccccccccccccccceEeecCcc
Confidence 887 33332 23788888888864
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.3e-22 Score=230.86 Aligned_cols=201 Identities=18% Similarity=0.182 Sum_probs=92.4
Q ss_pred CCceEEEEecCCCCCCCCC-C-cccccceeecccCCchhh-hhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEee
Q 046314 591 EKLKYLHLHKYPLRTLPEN-F-KPKNLIELNLPFSKIVQI-WEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERIN 667 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l-~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ 667 (1137)
+.|++|++++|.++.+|.. + .+++|++|+|++|.+..+ +.... .+++|++|+|++|.+. .+|.- ..++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~-~l~~~-~~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA--PLVKLERLYLSKNQLK-ELPEK-MPKTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCS-BCCSS-CCTTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc--CCCCCCEEECCCCcCC-ccChh-hcccccEEE
Confidence 3555556655555555542 2 455555555555555544 22222 2235555555555533 22221 114555555
Q ss_pred ccCCCCccccCccccCCCcCceEeccCCcCcc--cCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccC
Q 046314 668 LWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLR--SFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVP 745 (1137)
Q Consensus 668 L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~--~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp 745 (1137)
+++|......+..+.++++|+.|++++|.... ..+..+. ...+|+.|++++|.+..+|
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------------~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ--------------------GMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG--------------------GCTTCCEEECCSSCCCSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc--------------------CCCCcCEEECCCCccccCC
Confidence 55554443333445555555555555543211 1111110 1123444444444444444
Q ss_pred ccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCc
Q 046314 746 SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPH 817 (1137)
Q Consensus 746 ~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~ 817 (1137)
..+. ++|+.|++++|.+.+..|..+.++++|++|++++|......+..+..+++|+.|++++|.+..+|.
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence 4332 455555555555444444445555555555555554444333344444445555555444444443
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.7e-22 Score=230.10 Aligned_cols=285 Identities=16% Similarity=0.137 Sum_probs=218.5
Q ss_pred ccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCC-CCCCCCCCceEEEEecCCCCCC-CCCC-c
Q 046314 535 LNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPD-GLDYLPEKLKYLHLHKYPLRTL-PENF-K 611 (1137)
Q Consensus 535 ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~-~l~~l~~~L~~L~l~~~~l~~l-p~~~-~ 611 (1137)
++++......++... .++|+.|++++|. ...++. .+..+ ++|++|++++|.++.+ |..+ .
T Consensus 36 l~~~~~~l~~lp~~~---~~~l~~L~L~~n~-------------i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~ 98 (330)
T 1xku_A 36 VQCSDLGLEKVPKDL---PPDTALLDLQNNK-------------ITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAP 98 (330)
T ss_dssp EECTTSCCCSCCCSC---CTTCCEEECCSSC-------------CCCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTT
T ss_pred EEecCCCccccCccC---CCCCeEEECCCCc-------------CCEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcC
Confidence 445544444444332 3689999998774 334444 45566 4899999999999988 5556 8
Q ss_pred ccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCcc--ccCccccCCCcCc
Q 046314 612 PKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLA--WVPSSIQNFNHLS 688 (1137)
Q Consensus 612 l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~--~~p~~i~~L~~L~ 688 (1137)
+++|++|+|++|.++.++.... ++|++|++++|.+....+. +..+++|++|++++|.... ..+..+..+++|+
T Consensus 99 l~~L~~L~Ls~n~l~~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 99 LVKLERLYLSKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp CTTCCEEECCSSCCSBCCSSCC----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCCEEECCCCcCCccChhhc----ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 8999999999999998866543 3999999999997765554 7899999999999997743 5677899999999
Q ss_pred eEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCcccc-CccccCCCCCcEEeccccccccc
Q 046314 689 LLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEV-PSSVECLTNLEYLYINRCKRLKR 767 (1137)
Q Consensus 689 ~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~ 767 (1137)
.|++++|. +..+|..+ ..+|++|++++|.+..+ |..+..+++|+.|+|++|.+.+.
T Consensus 175 ~L~l~~n~-l~~l~~~~----------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 175 YIRIADTN-ITTIPQGL----------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp EEECCSSC-CCSCCSSC----------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred EEECCCCc-cccCCccc----------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 99999875 44454422 14778888888998877 56799999999999999998888
Q ss_pred ccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCC
Q 046314 768 VSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALT 847 (1137)
Q Consensus 768 lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~ 847 (1137)
.+..+..+++|++|++++|... .+|..+..+++|+.|++++|.++.+|...-. .. ......++|+.|++++|.+.
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~--~~--~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC--PP--GYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS--CS--SCCTTSCCCSEEECCSSSSC
T ss_pred ChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC--Cc--ccccccccccceEeecCccc
Confidence 7888999999999999999755 7888899999999999999999988763210 00 00123577888999998876
Q ss_pred C---cccccCCCCCCCEEEccCCC
Q 046314 848 A---IPEEIGCLPSLEWLELRGNN 868 (1137)
Q Consensus 848 ~---lp~~l~~l~~L~~L~Ls~n~ 868 (1137)
. .|..+..+++|+.++|++|+
T Consensus 307 ~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 307 YWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccCccccccccceeEEEecccC
Confidence 4 45678888888888888874
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.8e-23 Score=235.70 Aligned_cols=250 Identities=17% Similarity=0.155 Sum_probs=180.6
Q ss_pred cccceeecccCCchh---hhhhhhhccccceeEEecCC-CCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcC
Q 046314 613 KNLIELNLPFSKIVQ---IWEEKRYVKAFKLKSINLSH-SQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHL 687 (1137)
Q Consensus 613 ~~L~~L~L~~n~i~~---l~~~~~~~~l~~L~~L~Ls~-n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L 687 (1137)
.+++.|+|++|.+.. ++..... +++|++|+|++ |.+...+|. +..+++|++|+|++|...+.+|..+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~--l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN--LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG--CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhC--CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 355566666665552 3333322 22556666653 544444443 4555555555555555554555555555555
Q ss_pred ceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCcc-ccCccccCCC-CCcEEeccccccc
Q 046314 688 SLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIE-EVPSSVECLT-NLEYLYINRCKRL 765 (1137)
Q Consensus 688 ~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~L~~~~~l 765 (1137)
++|+|++|.....+|..+. ...+|++|++++|.+. .+|..+..++ +|++|++++|.+.
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~--------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSIS--------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CEEECCSSEEESCCCGGGG--------------------GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CEEeCCCCccCCcCChHHh--------------------cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 5555555543333333221 2236777788888888 7888899988 9999999999998
Q ss_pred ccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCC
Q 046314 766 KRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCA 845 (1137)
Q Consensus 766 ~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~ 845 (1137)
+.+|..+..++ |++|++++|......|..+..+++|+.|++++|.+...+.. +..+++|++|+|++|.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-----------VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----------CCCCTTCCEEECCSSC
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-----------ccccCCCCEEECcCCc
Confidence 89999999887 99999999988888888999999999999999998754432 4567899999999999
Q ss_pred CC-CcccccCCCCCCCEEEccCCCCC-cCCCCCCcccccceeccccccccccCC
Q 046314 846 LT-AIPEEIGCLPSLEWLELRGNNFE-SLPSIPELPPSLKWLQASNCKRLQFLP 897 (1137)
Q Consensus 846 l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~~l~~~L~~L~l~~c~~L~~lp 897 (1137)
++ .+|..+..+++|+.|+|++|+++ .+|....++ +|+.|++++++.+...|
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~-~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ-RFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGG-GSCGGGTCSSSEEESTT
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCCcccc-ccChHHhcCCCCccCCC
Confidence 98 58999999999999999999998 677667777 99999999988765543
No 52
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.89 E-value=6.1e-25 Score=214.07 Aligned_cols=133 Identities=21% Similarity=0.323 Sum_probs=95.2
Q ss_pred CCCCcccEEEcccccccCCchHHHHHHHHhc--CCCcEEEcC-CCCCCCcchHHHHHHhhhcceeEEEeccccccchhhH
Q 046314 5 SPSCNYDVFLSFRGEDTRENFTSHLYAALCG--KKIKTFIDE-DLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWCL 81 (1137)
Q Consensus 5 ~~~~~~dvFis~~~~d~r~~~~~~l~~~l~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~ 81 (1137)
...++|||||||+++| ..||+||+++|++ .|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|++|++|.||.
T Consensus 6 r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~ 83 (146)
T 3ub2_A 6 RWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCK 83 (146)
T ss_dssp TTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHH
T ss_pred CCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHH
Confidence 3467999999999999 5689999999998 599999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeecCcccc----cccccchHHHHHHHHHHhhhhHHHHHHHHHHH
Q 046314 82 NELVKILKCKNLKGQTVIPIYYHVSPSDV----RKQTGTFGEGFVKLEQQFKEKAETVRKWRDAM 142 (1137)
Q Consensus 82 ~el~~~~~~~~~~~~~v~pvfy~v~p~~v----r~~~g~~~~~~~~~~~~~~~~~~~v~~w~~aL 142 (1137)
.|+..|+.+......+||||||+|+++++ |....... ..++..+....+.|.+|++||
T Consensus 84 ~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 84 YQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 99999999874344478899999985554 54432211 122344445567889998775
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=3.7e-22 Score=243.60 Aligned_cols=259 Identities=18% Similarity=0.188 Sum_probs=195.7
Q ss_pred CCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhh
Q 046314 554 SSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKR 633 (1137)
Q Consensus 554 ~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~ 633 (1137)
.+++.|+++++. ...+|..+. ++|++|++++|.++.+|. .+++|++|+|++|+++.++.
T Consensus 40 ~~l~~L~ls~n~-------------L~~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESG-------------LTTLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSC-------------CSCCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---
T ss_pred CCCcEEEecCCC-------------cCccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---
Confidence 478999997764 446676554 589999999999999988 67899999999999988765
Q ss_pred hccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceE
Q 046314 634 YVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNI 713 (1137)
Q Consensus 634 ~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L 713 (1137)
.+++|++|+|++|.+.. +|. .+++|+.|++++|. +..+|.. +++|++|+|++| .+..+|. ...+|+.|
T Consensus 99 --~l~~L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L 166 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA--LPSELCKL 166 (622)
T ss_dssp --CCTTCCEEEECSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEE
T ss_pred --CCCCCCEEECcCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCC--ccCCCCEE
Confidence 34589999999997654 444 67889999999885 4446653 488899999887 4556664 34678888
Q ss_pred eccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccc
Q 046314 714 DCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSW 793 (1137)
Q Consensus 714 ~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 793 (1137)
++++| .++.+|..+.+|+.|++++|.+..+|.. +++|+.|++++|.+. .+|. .+++|++|++++|.... +|
T Consensus 167 ~L~~N-~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp 237 (622)
T 3g06_A 167 WAYNN-QLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP 237 (622)
T ss_dssp ECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC
T ss_pred ECCCC-CCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC
Confidence 88874 4566777777888888888888887764 467888888887655 3443 24778888888875443 45
Q ss_pred cccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCc
Q 046314 794 SELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 794 ~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
..+++|+.|++++|.|+.+|. .+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~lp~--------------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTSLPM--------------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC--------------CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred ---CCCCcCcEEECCCCCCCcCCc--------------ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 456778888888888887775 2467888888888888888888888888888888888764
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=7.5e-22 Score=245.89 Aligned_cols=334 Identities=19% Similarity=0.160 Sum_probs=217.5
Q ss_pred eccccccccccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCC-CCCCCCceEEEEecCCCCCCCCC-C-
Q 046314 534 FLNLAKIKGINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGL-DYLPEKLKYLHLHKYPLRTLPEN-F- 610 (1137)
Q Consensus 534 ~ldl~~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l-~~l~~~L~~L~l~~~~l~~lp~~-~- 610 (1137)
.+|++.++...+++.+|.++++|++|++++|. ...+|.+. ..+ .+|++|++++|.++.+|.. +
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-------------l~~l~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~~~ 145 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-------------IQSLALGAFSGL-SSLQKLVAVETNLASLENFPIG 145 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCC-------------CCEECGGGGTTC-TTCCEEECTTSCCCCSTTCCCT
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCc-------------CCCCCHHHhcCC-CCCCEEECCCCcCCCCChhhhh
Confidence 44555555556677889999999999998874 44556543 444 4788888888888888765 3
Q ss_pred cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CC---------------------------CCCc
Q 046314 611 KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PS---------------------------ETPS 662 (1137)
Q Consensus 611 ~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~---------------------------~l~~ 662 (1137)
++++|++|+|++|.+..+.....+..+++|++|+|++|++....+. +. ....
T Consensus 146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~ 225 (635)
T 4g8a_A 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 225 (635)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchh
Confidence 7888888888888887654333344455888888888875433221 11 1112
Q ss_pred ccEeeccCCCCcc----------------------------------------------------------cc-------
Q 046314 663 LERINLWNCTNLA----------------------------------------------------------WV------- 677 (1137)
Q Consensus 663 L~~L~L~~~~~l~----------------------------------------------------------~~------- 677 (1137)
++.|++.+|.... ..
T Consensus 226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 305 (635)
T 4g8a_A 226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL 305 (635)
T ss_dssp EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence 2233332221000 00
Q ss_pred ---------------CccccCCCcCceEeccCCcCcc--------------------cCCCCCCCCCCceEeccCCccCC
Q 046314 678 ---------------PSSIQNFNHLSLLCFQGCKNLR--------------------SFPSNLHFVSPVNIDCSFCVNLT 722 (1137)
Q Consensus 678 ---------------p~~i~~L~~L~~L~L~~c~~l~--------------------~lp~~~~l~~L~~L~ls~c~~l~ 722 (1137)
...+.....|+.|++.+|.... ..+....+++|+.|+++.+....
T Consensus 306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred cccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence 0012223455666665553211 11222346677777777653211
Q ss_pred --CCC--------------------------cccCCCcEEEecCCCccccC--ccccCCCCCcEEecccccccccccccc
Q 046314 723 --EFP--------------------------RISGNITKLNLCDTAIEEVP--SSVECLTNLEYLYINRCKRLKRVSTSI 772 (1137)
Q Consensus 723 --~~~--------------------------~~~~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~l 772 (1137)
..+ ....+++.+++.++.....+ ..+..+++|+.++++.|.+....+..+
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 011 01224445555544443332 225566677777777777766677777
Q ss_pred cCCCCCcEeccccccccc-ccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc-
Q 046314 773 CKLKSLIWLCLNECLNLE-KSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP- 850 (1137)
Q Consensus 773 ~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp- 850 (1137)
..+++|+.|++++|.... ..|..+..+++|+.|++++|.++.++.. .|.++++|++|+|++|+++.++
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~----------~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT----------AFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT----------TTTTCTTCCEEECTTSCCCBCCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH----------HHcCCCCCCEEECCCCcCCCCCh
Confidence 788888888888887554 4567788888888888888888877542 3678899999999999999965
Q ss_pred cccCCCCCCCEEEccCCCCCcCC--CCCCcccccceecccccc
Q 046314 851 EEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 851 ~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~ 891 (1137)
..+..+++|+.|+|++|+++.++ .+..++++|+.|+|++|+
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 56899999999999999999887 677886699999999876
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=2.3e-21 Score=236.64 Aligned_cols=254 Identities=19% Similarity=0.205 Sum_probs=138.5
Q ss_pred CceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCC
Q 046314 592 KLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNC 671 (1137)
Q Consensus 592 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~ 671 (1137)
+++.|++++|.++.+|..+. ++|++|+|++|+++.++. .+++|++|+|++|.+. .+|. .+++|++|+|++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCC
Confidence 35566666666666665443 566666666666665543 1235666666666533 3333 5566666666665
Q ss_pred CCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCC
Q 046314 672 TNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECL 751 (1137)
Q Consensus 672 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l 751 (1137)
.. ..+|. .+++|+.|++++|. +..+|.. +++|+.|++++| .++.+|..+.+|+.|++++|.+..+| ..+
T Consensus 112 ~l-~~l~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~ 180 (622)
T 3g06_A 112 PL-THLPA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLP 180 (622)
T ss_dssp CC-CCCCC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCC
T ss_pred cC-CCCCC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccC
Confidence 32 23333 44556666665543 4445543 355666666654 44455555556666666666666665 334
Q ss_pred CCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccC
Q 046314 752 TNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLS 831 (1137)
Q Consensus 752 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~ 831 (1137)
++|+.|++++|.+.+ +|.. +++|+.|++++|... .+|. .+++|+.|++++|.++.+|.
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp~-------------- 238 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLPV-------------- 238 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCCC--------------
T ss_pred CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCCC--------------
Confidence 556666666655433 3322 355666666665433 2332 23556666666666655542
Q ss_pred CCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC-CCCCcccccceecccccc
Q 046314 832 GLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP-SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 832 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c~ 891 (1137)
.+++|+.|+|++|.++.+|. .+++|+.|+|++|+|+.+| .+..++ +|+.|+|++|+
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~-~L~~L~L~~N~ 295 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLS-SETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSC-TTCEEECCSCC
T ss_pred CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhcc-ccCEEEecCCC
Confidence 23556666666666666555 4455666666666666665 455555 66666666554
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=5.8e-22 Score=224.79 Aligned_cols=132 Identities=24% Similarity=0.275 Sum_probs=96.3
Q ss_pred CCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccC
Q 046314 730 NITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG 809 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 809 (1137)
+|+.|++++|.+..+|..++.+++|++|+|++|.+.+ +|..+..+++|++|++++|.....+|..+..+++|+.|++++
T Consensus 184 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp TCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 5666666667777777777777777777777777654 555677777777777777777777777777777777777777
Q ss_pred cccc-ccCchhhccccccccccCCCCCCCEEeecCCCCCC-cccccCCCCCCCEEEccCCCCCcCC
Q 046314 810 STIS-QLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 810 n~i~-~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
|.+. .+|.. +.++++|++|+|++|++.+ +|..+..+++|+.+++..+.+..++
T Consensus 263 n~~~~~~p~~-----------~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 263 CSNLLTLPLD-----------IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CTTCCBCCTT-----------GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred CCchhhcchh-----------hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 6543 45543 3457888888999887665 8889999999999999887666544
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.1e-21 Score=221.30 Aligned_cols=245 Identities=17% Similarity=0.199 Sum_probs=205.7
Q ss_pred ceeEEecCCCCCCC--ccCC-CCCCCcccEeeccC-CCCccccCccccCCCcCceEeccCCcCcccCCCCCC-CCCCceE
Q 046314 639 KLKSINLSHSQYLI--RIPD-PSETPSLERINLWN-CTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLH-FVSPVNI 713 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~--~~p~-~~~l~~L~~L~L~~-~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L 713 (1137)
+++.|+|++|.+.. .+|. +..+++|++|+|++ |.....+|..++++++|++|+|++|.....+|..+. ++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~----- 125 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK----- 125 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-----
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-----
Confidence 89999999999876 5665 78999999999995 777778899999999999999999876556665432 33
Q ss_pred eccCCccCCCCCcccCCCcEEEecCCCcc-ccCccccCCCCCcEEecccccccccccccccCCC-CCcEecccccccccc
Q 046314 714 DCSFCVNLTEFPRISGNITKLNLCDTAIE-EVPSSVECLTNLEYLYINRCKRLKRVSTSICKLK-SLIWLCLNECLNLEK 791 (1137)
Q Consensus 714 ~ls~c~~l~~~~~~~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~L~~~~~~~~ 791 (1137)
+|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.....
T Consensus 126 ----------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 126 ----------------TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp ----------------TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred ----------------CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 5566666778887 6788899999999999999999989999999998 999999999998888
Q ss_pred cccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCC-
Q 046314 792 SWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFE- 870 (1137)
Q Consensus 792 ~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~- 870 (1137)
.|..+..++ |+.|++++|.+...+.. .+..+++|+.|+|++|.++..+..+..+++|++|+|++|+++
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASV----------LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGG----------GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCH----------HHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC
Confidence 999999997 99999999999865432 266789999999999999986666899999999999999998
Q ss_pred cCC-CCCCcccccceeccccccccccCCCC--CCCcceeeccccccccc
Q 046314 871 SLP-SIPELPPSLKWLQASNCKRLQFLPEI--PSRPEELDASLLQKLSK 916 (1137)
Q Consensus 871 ~lp-~~~~l~~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c~~L~~ 916 (1137)
.+| .+..++ +|+.|++++|+....+|.. .++|+.|++.+.+.+..
T Consensus 259 ~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 259 TLPQGLTQLK-FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCGGGGGCT-TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred cCChHHhcCc-CCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 677 777887 9999999999876677765 24667777777665543
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=4.6e-22 Score=224.83 Aligned_cols=259 Identities=14% Similarity=0.131 Sum_probs=136.7
Q ss_pred ccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEec
Q 046314 614 NLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCF 692 (1137)
Q Consensus 614 ~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L 692 (1137)
.+..++++.+.+...+... +..+++|+.|+|++|.+....|. +..+++|++|+|++|......+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASL-RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHH-HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHH-hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3455566666666554433 22344788888888876665543 6778888888888876554433 777888888888
Q ss_pred cCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCc-cccCCCCCcEEeccccccccccccc
Q 046314 693 QGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTS 771 (1137)
Q Consensus 693 ~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~ 771 (1137)
++|. +..+|. .++|+.|++++|..-...+..+.+|++|++++|.+..++. .+..+++|++|++++|.+.+..+..
T Consensus 88 s~n~-l~~l~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 88 NNNY-VQELLV---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp CSSE-EEEEEE---CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cCCc-cccccC---CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 7764 333332 2444455544433222222233445555555555555433 3455555555555555555444444
Q ss_pred c-cCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc
Q 046314 772 I-CKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP 850 (1137)
Q Consensus 772 l-~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp 850 (1137)
+ ..+++|++|++++|..... + ....+++|+.|++++|.++.+|..+ ..+++|+.|+|++|.++.+|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~-----------~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEF-----------QSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGG-----------GGGTTCSEEECTTSCCCEEC
T ss_pred HhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhh-----------cccCcccEEECcCCcccchh
Confidence 3 2455555555555543322 1 1223555555555555555544422 22345555555555555555
Q ss_pred cccCCCCCCCEEEccCCCCC--cCC-CCCCcccccceecccccccc
Q 046314 851 EEIGCLPSLEWLELRGNNFE--SLP-SIPELPPSLKWLQASNCKRL 893 (1137)
Q Consensus 851 ~~l~~l~~L~~L~Ls~n~l~--~lp-~~~~l~~~L~~L~l~~c~~L 893 (1137)
..+..+++|+.|+|++|.+. .+| .+..++ +|+.|++.+|+.+
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~-~L~~l~l~~~~~l 275 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQTVKKL 275 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred hHhhcCCCCCEEEccCCCccCcCHHHHHhccc-cceEEECCCchhc
Confidence 55555555555555555554 222 333333 4445544444433
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=3.5e-21 Score=216.62 Aligned_cols=130 Identities=22% Similarity=0.280 Sum_probs=71.5
Q ss_pred cEEEecCCCcccc-CccccCCCCCcEEecccccccc-cccccccCCCCCcEecccccccccccccccCCCCCcceecccC
Q 046314 732 TKLNLCDTAIEEV-PSSVECLTNLEYLYINRCKRLK-RVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG 809 (1137)
Q Consensus 732 ~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 809 (1137)
++|++++|.+..+ |..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|......|..+..+++|+.|++++
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 3333333444433 2335556666666666666554 4555666666666666666655555555566666666666666
Q ss_pred ccccccCchhhccccccccccCCCCCCCEEeecCCCCCC-cccccCCCC-CCCEEEccCCCCCc
Q 046314 810 STISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-IPEEIGCLP-SLEWLELRGNNFES 871 (1137)
Q Consensus 810 n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~-~L~~L~Ls~n~l~~ 871 (1137)
|.+..++.. .+.++++|++|+|++|.+++ .|..+..++ +|+.|+|++|.++.
T Consensus 209 N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 209 NNFFSLDTF----------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCSBCCSG----------GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CccCccChh----------hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 665554431 13445566666666666555 344455553 56666666665543
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=6.1e-21 Score=216.39 Aligned_cols=222 Identities=19% Similarity=0.225 Sum_probs=134.2
Q ss_pred CCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC-cccccceeecccCCchhhhhh
Q 046314 553 MSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF-KPKNLIELNLPFSKIVQIWEE 631 (1137)
Q Consensus 553 l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~ 631 (1137)
..+++.|+++++. ...+|..+..++ +|++|++++|.++.+|..+ .+.+|++|+|++|.+..++..
T Consensus 80 ~~~l~~L~L~~n~-------------l~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVP-------------LPQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS 145 (328)
T ss_dssp STTCCEEEEESSC-------------CSSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG
T ss_pred ccceeEEEccCCC-------------chhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH
Confidence 4667888887764 346777777764 7888888888888888766 777888888888887777655
Q ss_pred hhhccccceeEEecCCCCCCCccCC-CC---------CCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccC
Q 046314 632 KRYVKAFKLKSINLSHSQYLIRIPD-PS---------ETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSF 701 (1137)
Q Consensus 632 ~~~~~l~~L~~L~Ls~n~~~~~~p~-~~---------~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~l 701 (1137)
...+. +|++|+|++|.....+|. +. .+++|++|+|++|... .+|..++++++|+.|+|++|.. ..+
T Consensus 146 l~~l~--~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l-~~l 221 (328)
T 4fcg_A 146 IASLN--RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL-SAL 221 (328)
T ss_dssp GGGCT--TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC-CCC
T ss_pred HhcCc--CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC-CcC
Confidence 44444 788888877777666665 22 2666666666666433 5666666666666666666532 233
Q ss_pred CCCCC-CCCCceEeccCCccCCCCCcccCCCcEEEecCCCc-cccCccccCCCCCcEEecccccccccccccccCCCCCc
Q 046314 702 PSNLH-FVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAI-EEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLI 779 (1137)
Q Consensus 702 p~~~~-l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 779 (1137)
|..+. +++|+. |++++|.+ ..+|..++.+++|++|+|++|...+.+|..+.++++|+
T Consensus 222 ~~~l~~l~~L~~---------------------L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 222 GPAIHHLPKLEE---------------------LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp CGGGGGCTTCCE---------------------EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred chhhccCCCCCE---------------------EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence 33221 223333 33333222 23344455555566666666555555555555666666
Q ss_pred EecccccccccccccccCCCCCcceecccCcccc
Q 046314 780 WLCLNECLNLEKSWSELGNLKSFQYIGAHGSTIS 813 (1137)
Q Consensus 780 ~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~ 813 (1137)
+|+|++|...+.+|..++++++|+.+.+..+.+.
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 6666666555555555555555555555544433
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=6.5e-21 Score=214.41 Aligned_cols=135 Identities=22% Similarity=0.254 Sum_probs=94.2
Q ss_pred cccCCCCCcEEecccccccccccccccCCCCCcEeccccccccc-ccccccCCCCCcceecccCccccccCchhhccccc
Q 046314 747 SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLE-KSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSL 825 (1137)
Q Consensus 747 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L 825 (1137)
.+..+++|++|++++|.+.+..+..+.++++|++|++++|.... ..|..+..+++|+.|++++|.++.++..
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------- 193 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT------- 193 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-------
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH-------
Confidence 35566777777777777776677777777777777777776654 4666777777777777777777765331
Q ss_pred cccccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCCCCCcCC--CCCCcccccceecccccc
Q 046314 826 HASLLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 826 ~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~ 891 (1137)
.+.++++|++|+|++|.+++++. .+..+++|+.|+|++|+++..+ .+..++++|+.|++++|+
T Consensus 194 ---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 194 ---AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ---TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ---HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 24556777777777777777543 5677777777777777777654 555664577777777765
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=221.49 Aligned_cols=267 Identities=16% Similarity=0.153 Sum_probs=199.2
Q ss_pred ceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCC
Q 046314 593 LKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNC 671 (1137)
Q Consensus 593 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~ 671 (1137)
....+.+++.++.+|..+. ++|++|+|++|+++.++.. .+..+++|++|+|++|.+....|. +..+++|++|+|++|
T Consensus 33 ~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3457778888888887653 4788888888888877542 233445888888888887666555 788888888888888
Q ss_pred CCccccCccccCCCcCceEeccCCcCcccCCC--CC-CCCCCceEeccCCccCCCCCcccCCCcEEEecCC-CccccC-c
Q 046314 672 TNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPS--NL-HFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDT-AIEEVP-S 746 (1137)
Q Consensus 672 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~-~i~~lp-~ 746 (1137)
......+..++++++|++|++++|. +..+|. .+ .++ +|++|++++| .+..++ .
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~---------------------~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLT---------------------KLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCT---------------------TCCEEEEEESSSCCEECTT
T ss_pred cCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCC---------------------CCcEEECCCCccccccCHH
Confidence 6554333347888888888888864 344544 11 133 4555666666 466664 4
Q ss_pred cccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhcccccc
Q 046314 747 SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLH 826 (1137)
Q Consensus 747 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~ 826 (1137)
.+..+++|++|++++|.+.+..|..+.++++|++|++++|.........+..+++|+.|++++|.++.++..- +.
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--l~--- 243 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE--LS--- 243 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc--cc---
Confidence 6889999999999999998888999999999999999999864433334556899999999999998765321 10
Q ss_pred ccccCCCCCCCEEeecCCCCCC-----cccccCCCCCCCEEEccCCCCCcCC-C-CCCcccccceecccccc
Q 046314 827 ASLLSGLSSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRGNNFESLP-S-IPELPPSLKWLQASNCK 891 (1137)
Q Consensus 827 ~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~lp-~-~~~l~~~L~~L~l~~c~ 891 (1137)
.......++.++|+++.+++ +|..+..+++|++|+|++|+++.+| . +..++ +|+.|++++|+
T Consensus 244 --~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~~N~ 312 (353)
T 2z80_A 244 --TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT-SLQKIWLHTNP 312 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSC
T ss_pred --cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCC-CCCEEEeeCCC
Confidence 12346778899999988875 7888999999999999999999999 4 46777 99999998885
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=3.2e-20 Score=220.76 Aligned_cols=244 Identities=21% Similarity=0.222 Sum_probs=136.7
Q ss_pred ceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCC
Q 046314 593 LKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNC 671 (1137)
Q Consensus 593 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~ 671 (1137)
.+.++.++..++.+|..+ +.+|++|+|++|++..+... .+..+++|+.|+|++|.+....+. +.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 344555555555555443 24555555555555554322 122333566666666655444433 455666666666665
Q ss_pred CCccccCccccCCCcCceEeccCCcCcccCCCC-C-CCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCc-cc
Q 046314 672 TNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSN-L-HFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPS-SV 748 (1137)
Q Consensus 672 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i 748 (1137)
......+..+..+++|++|+|++|. +..+|.. + .+++|+.|++++|..++. +|. .+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~--------------------i~~~~~ 192 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEY--------------------ISEGAF 192 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCE--------------------ECTTTT
T ss_pred cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccc--------------------cChhhc
Confidence 4443333445556666666666543 2333331 2 244444444444433332 222 24
Q ss_pred cCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhcccccccc
Q 046314 749 ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHAS 828 (1137)
Q Consensus 749 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~ 828 (1137)
..+++|++|+|++|.+.+. | .+..+++|++|+|++|......|..+.++++|+.|++++|.+..++..
T Consensus 193 ~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------- 260 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN---------- 260 (452)
T ss_dssp TTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT----------
T ss_pred cCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH----------
Confidence 4555555555555554332 2 355556666666666665555566666666666666666666655432
Q ss_pred ccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCCCCCc
Q 046314 829 LLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 829 ~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
.+.++++|+.|+|++|.++.+|. .+..+++|+.|+|++|.+..
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 25567888888888888888664 46788999999999997764
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=220.21 Aligned_cols=112 Identities=25% Similarity=0.246 Sum_probs=68.8
Q ss_pred ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccc
Q 046314 748 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHA 827 (1137)
Q Consensus 748 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~ 827 (1137)
+..+++|++|+|++|.+. .+| .+..+++|++|+|++|......|..+.++++|+.|++++|.++.++..
T Consensus 181 ~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------- 249 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN--------- 249 (440)
T ss_dssp TTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---------
T ss_pred hhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh---------
Confidence 344445555555554433 222 244555555555555555544455566666666666666666655432
Q ss_pred cccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCCCCCc
Q 046314 828 SLLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 828 ~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
.|.++++|+.|+|++|+++.+|. .+..+++|+.|+|++|.+..
T Consensus 250 -~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 250 -AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp -SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred -hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 25567788888888888887664 46778889999999887753
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.3e-19 Score=215.50 Aligned_cols=241 Identities=21% Similarity=0.205 Sum_probs=193.3
Q ss_pred ccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEec
Q 046314 614 NLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCF 692 (1137)
Q Consensus 614 ~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L 692 (1137)
....++.++..+..+|.+.. . +|+.|+|++|.+....|+ |..+++|++|+|++|......+..+.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~--~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--S--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--T--TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCCCCC--C--CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 46778888888888876542 3 899999999988776665 789999999999999877777788999999999999
Q ss_pred cCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCc-cccCCCCCcEEecccccccccccc-
Q 046314 693 QGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVST- 770 (1137)
Q Consensus 693 ~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~- 770 (1137)
++|. +..+|... .....+|++|+|++|.+..+|. .+..+++|+.|++++|+.++.++.
T Consensus 131 ~~n~-l~~~~~~~-------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 131 FDNW-LTVIPSGA-------------------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp CSSC-CSBCCTTT-------------------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred CCCc-CCccChhh-------------------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 9875 44444321 0112366777777788888876 488999999999999877777765
Q ss_pred cccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCc-
Q 046314 771 SICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAI- 849 (1137)
Q Consensus 771 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l- 849 (1137)
.+.++++|++|+|++|.... +| .+..+++|+.|++++|.+..++.. .+.++++|+.|+|++|.++.+
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPG----------SFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGG----------GGTTCTTCCEEECTTSCCCEEC
T ss_pred hccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcc----------cccCccCCCEEEeCCCcCceEC
Confidence 58899999999999997654 34 578899999999999999877542 266788999999999999985
Q ss_pred ccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceecccccc
Q 046314 850 PEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 850 p~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~ 891 (1137)
|..+..+++|+.|+|++|+++.+| .+..++ +|+.|+|++|+
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~Np 301 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLR-YLVELHLHHNP 301 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT-TCCEEECCSSC
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhcccc-CCCEEEccCCC
Confidence 667889999999999999999988 456676 89999998875
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=4.5e-20 Score=205.24 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=130.8
Q ss_pred eEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCC
Q 046314 594 KYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCT 672 (1137)
Q Consensus 594 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~ 672 (1137)
+.++++++.++.+|..+ +++|++|+|++|.+..++... +..+++|++|+|++|.+....|. +..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHH-cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56677777777776543 345666666666555543221 12233555555555544333232 3444444444444443
Q ss_pred Ccccc-CccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCcccc-CccccC
Q 046314 673 NLAWV-PSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEV-PSSVEC 750 (1137)
Q Consensus 673 ~l~~~-p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~i~~ 750 (1137)
.+..+ |..+..+++|++|+++ +|.+..+ |..+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~--------------------------------------------~n~l~~~~~~~~~~ 127 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLD--------------------------------------------RCGLQELGPGLFRG 127 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECT--------------------------------------------TSCCCCCCTTTTTT
T ss_pred CccccCHHHhcCCcCCCEEECC--------------------------------------------CCcCCEECHhHhhC
Confidence 22222 3334444444444444 3444444 334566
Q ss_pred CCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhcccccccccc
Q 046314 751 LTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLL 830 (1137)
Q Consensus 751 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l 830 (1137)
+++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|+.|++++|.+..++.. .+
T Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~ 197 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH----------AF 197 (285)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------TT
T ss_pred CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh----------Hc
Confidence 66777777777766655555566777777777777765544444577777777777777777655321 24
Q ss_pred CCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCCCCCc
Q 046314 831 SGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 831 ~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
.++++|+.|+|++|.++++|. .+..+++|+.|+|++|.+..
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 567788888888888888664 57888888888888888764
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=9.4e-21 Score=226.70 Aligned_cols=233 Identities=14% Similarity=0.138 Sum_probs=143.6
Q ss_pred ceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccC
Q 046314 639 KLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSF 717 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~ 717 (1137)
+|+.|+|++|.+....|. +..+++|++|+|++|......| ++.+++|++|+|++|. +..+|. .++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~---~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV---GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE---CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC---CCCcCEEECcC
Confidence 455555555554443332 4555555555555554333332 5555555555555542 222222 13444444444
Q ss_pred CccCCCCCcccCCCcEEEecCCCcccc-CccccCCCCCcEEeccccccccccccccc-CCCCCcEecccccccccccccc
Q 046314 718 CVNLTEFPRISGNITKLNLCDTAIEEV-PSSVECLTNLEYLYINRCKRLKRVSTSIC-KLKSLIWLCLNECLNLEKSWSE 795 (1137)
Q Consensus 718 c~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~~~~~~~~~~~ 795 (1137)
|..-...+..+.+|+.|+|++|.+..+ |..++.+++|+.|+|++|.+.+..|..+. .+++|++|+|++|..... + .
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~ 186 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-G 186 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-C
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-c
Confidence 433222233345677777777777766 44577778888888888877777777665 678888888888775543 2 2
Q ss_pred cCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCC--cCC
Q 046314 796 LGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFE--SLP 873 (1137)
Q Consensus 796 l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp 873 (1137)
...+++|+.|++++|.++.+|..+ ..+++|+.|+|++|.++.+|..+..+++|+.|++++|.+. .+|
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~~-----------~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPEF-----------QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGG-----------GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cccCCCCCEEECCCCCCCCCCHhH-----------cCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 335777888888888877776643 3457778888888888877777777788888888888776 444
Q ss_pred -CCCCcccccceecccccc
Q 046314 874 -SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 874 -~~~~l~~~L~~L~l~~c~ 891 (1137)
.+..++ .|+.|++..+.
T Consensus 256 ~~~~~l~-~L~~l~~~~~~ 273 (487)
T 3oja_A 256 DFFSKNQ-RVQTVAKQTVK 273 (487)
T ss_dssp HHHTTCH-HHHHHHHHHHH
T ss_pred HHHHhCC-CCcEEeccccc
Confidence 455555 67766665443
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=213.32 Aligned_cols=220 Identities=21% Similarity=0.235 Sum_probs=158.2
Q ss_pred ceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccC
Q 046314 639 KLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSF 717 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~ 717 (1137)
+|+.|+|++|.+....+. +..+++|++|+|++|......+..+.++++|+.|+|++|. +..+|...
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------ 131 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGA------------ 131 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTT------------
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhH------------
Confidence 455555555554333332 4556666666666665444444556666666666666653 33333210
Q ss_pred CccCCCCCcccCCCcEEEecCCCccccCc-cccCCCCCcEEecccccccccccc-cccCCCCCcEecccccccccccccc
Q 046314 718 CVNLTEFPRISGNITKLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVST-SICKLKSLIWLCLNECLNLEKSWSE 795 (1137)
Q Consensus 718 c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~ 795 (1137)
.....+|++|+|++|.+..+|. .+..+++|+.|+|++|+.++.++. .|.++++|++|++++|... .+| .
T Consensus 132 -------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~ 202 (440)
T 3zyj_A 132 -------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202 (440)
T ss_dssp -------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-C
T ss_pred -------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-c
Confidence 0011245556666677777765 488899999999999877776665 6889999999999999755 445 4
Q ss_pred cCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCc-ccccCCCCCCCEEEccCCCCCcCC-
Q 046314 796 LGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRGNNFESLP- 873 (1137)
Q Consensus 796 l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp- 873 (1137)
+..+++|+.|++++|.++.++.. .|.++++|+.|+|++|.++.+ +..+..+++|+.|+|++|+++.+|
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPG----------SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTT----------TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCcccCEEECCCCccCccChh----------hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 88999999999999999877542 366789999999999999985 567899999999999999999998
Q ss_pred -CCCCcccccceecccccc
Q 046314 874 -SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 874 -~~~~l~~~L~~L~l~~c~ 891 (1137)
.+..++ +|+.|+|++|+
T Consensus 273 ~~~~~l~-~L~~L~L~~Np 290 (440)
T 3zyj_A 273 DLFTPLH-HLERIHLHHNP 290 (440)
T ss_dssp TTTSSCT-TCCEEECCSSC
T ss_pred hHhcccc-CCCEEEcCCCC
Confidence 466777 99999999876
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=9.1e-21 Score=214.18 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=214.8
Q ss_pred ceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccC
Q 046314 639 KLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSF 717 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~ 717 (1137)
+++.++++.+.+...++. +..+++|++|+|++|......|..+..+++|+.|+|++|..... +....+++|+.|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EEETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hhhhhcCCCCEEECcC
Confidence 677888888876544444 36778999999999987777678899999999999999865443 3344589999999999
Q ss_pred CccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccccccccc-
Q 046314 718 CVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSEL- 796 (1137)
Q Consensus 718 c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l- 796 (1137)
|. ++.++.. .+|+.|++++|.+..++.. .+++|+.|++++|.+.+..+..+..+++|++|++++|......+..+
T Consensus 90 n~-l~~l~~~-~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 90 NY-VQELLVG-PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp SE-EEEEEEC-TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred Cc-cccccCC-CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 74 5555533 6999999999999988754 47899999999999988888889999999999999998887767666
Q ss_pred CCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC-CC
Q 046314 797 GNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP-SI 875 (1137)
Q Consensus 797 ~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~ 875 (1137)
..+++|+.|++++|.++.+|. ...+++|++|+|++|.++.+|..+..+++|+.|+|++|+++.+| .+
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~------------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKG------------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEEC------------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred hccCcCCEEECCCCcCccccc------------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh
Confidence 479999999999999998765 33589999999999999999988999999999999999999999 67
Q ss_pred CCcccccceecccccccc-ccCCCC---CCCcceeecccccccccc
Q 046314 876 PELPPSLKWLQASNCKRL-QFLPEI---PSRPEELDASLLQKLSKY 917 (1137)
Q Consensus 876 ~~l~~~L~~L~l~~c~~L-~~lp~l---p~~L~~L~~~~c~~L~~~ 917 (1137)
..++ +|+.|++++|+.. ..+|.. .+.|+.|++.+|..++..
T Consensus 234 ~~l~-~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 234 RFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCCT-TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hcCC-CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 7777 9999999998755 344432 246777777777766654
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=3.7e-20 Score=205.89 Aligned_cols=210 Identities=21% Similarity=0.280 Sum_probs=134.1
Q ss_pred ceecCCCCCCCCCCceEEEEecCCCCCCCCC-C-cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCcc-C
Q 046314 579 KVQFPDGLDYLPEKLKYLHLHKYPLRTLPEN-F-KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRI-P 655 (1137)
Q Consensus 579 ~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~-p 655 (1137)
...+|.+ ++++|++|++++|.++.+|.. + .+++|++|+|++|.+..+... .+..+++|++|+|++|.....+ |
T Consensus 23 l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 23 LQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCH
Confidence 4455654 356899999999999998864 4 889999999999999887332 2334559999999999844444 4
Q ss_pred C-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEE
Q 046314 656 D-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKL 734 (1137)
Q Consensus 656 ~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L 734 (1137)
. +..+++|++|++++|......|..+.++++|++|++++|.. ..+|... + ....+|+.|
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~---------------~----~~l~~L~~L 158 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDT---------------F----RDLGNLTHL 158 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT---------------T----TTCTTCCEE
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhH---------------h----ccCCCccEE
Confidence 4 78999999999999987777778888899999999888642 2222210 0 011234444
Q ss_pred EecCCCccccCcc-ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccc
Q 046314 735 NLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTI 812 (1137)
Q Consensus 735 ~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i 812 (1137)
++++|.+..+|.. +..+++|+.|++++|.+.+..|..+.++++|+.|++++|......+..+..+++|+.|++++|.+
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 4444555555443 55555555555555555544455555555555555555544433333344444444444444433
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=212.96 Aligned_cols=257 Identities=19% Similarity=0.203 Sum_probs=176.5
Q ss_pred ceecCCCCCCCCCCceEEEEecCCCCCCCC-CC-cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC
Q 046314 579 KVQFPDGLDYLPEKLKYLHLHKYPLRTLPE-NF-KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD 656 (1137)
Q Consensus 579 ~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~ 656 (1137)
...+|.++. ++|++|++++|.++.+|. .+ .+++|++|+|++|++..+... .+..+++|++|+|++|.+....+.
T Consensus 43 l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 43 LNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp CSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHH
T ss_pred ccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHh
Confidence 445565443 478888888888887776 33 778888888888888776432 133344888888888876654444
Q ss_pred -CCCCCcccEeeccCCCCccccCc--cccCCCcCceEeccCCcCcccCCCC-CCCCCCceEeccCCccCCCCCcccCCCc
Q 046314 657 -PSETPSLERINLWNCTNLAWVPS--SIQNFNHLSLLCFQGCKNLRSFPSN-LHFVSPVNIDCSFCVNLTEFPRISGNIT 732 (1137)
Q Consensus 657 -~~~l~~L~~L~L~~~~~l~~~p~--~i~~L~~L~~L~L~~c~~l~~lp~~-~~l~~L~~L~ls~c~~l~~~~~~~~~L~ 732 (1137)
+..+++|++|++++|... .+|. .+.++++|+.|++++|..+..++.. +. ...+|+
T Consensus 119 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--------------------~l~~L~ 177 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA--------------------GLTFLE 177 (353)
T ss_dssp HHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT--------------------TCCEEE
T ss_pred HhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHcc--------------------CCCCCC
Confidence 678888888888887544 4444 6788888888888887655554321 11 112456
Q ss_pred EEEecCCCcccc-CccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccccccccc---CCCCCcceeccc
Q 046314 733 KLNLCDTAIEEV-PSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSEL---GNLKSFQYIGAH 808 (1137)
Q Consensus 733 ~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l---~~l~~L~~L~l~ 808 (1137)
+|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|++|++++|......+..+ .....++.+++.
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 666666777665 5667778888888888877543333334457788888888877655433332 234556666666
Q ss_pred Ccccc-----ccCchhhccccccccccCCCCCCCEEeecCCCCCCccccc-CCCCCCCEEEccCCCCCc
Q 046314 809 GSTIS-----QLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEI-GCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 809 ~n~i~-----~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~Ls~n~l~~ 871 (1137)
++.+. .+|.. +..+++|+.|+|++|.++.+|..+ ..+++|++|+|++|.+..
T Consensus 258 ~~~l~~~~l~~l~~~-----------l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 258 NVKITDESLFQVMKL-----------LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp SCBCCHHHHHHHHHH-----------HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccCcchhhhHHH-----------HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 66554 34443 456889999999999999999875 899999999999998875
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=9.8e-23 Score=243.51 Aligned_cols=315 Identities=17% Similarity=0.108 Sum_probs=175.1
Q ss_pred CceEEEEecCCCC-----CCCCCC-cccccceeecccCCchhhhhhhhhcccc----ceeEEecCCCCCCC----ccCC-
Q 046314 592 KLKYLHLHKYPLR-----TLPENF-KPKNLIELNLPFSKIVQIWEEKRYVKAF----KLKSINLSHSQYLI----RIPD- 656 (1137)
Q Consensus 592 ~L~~L~l~~~~l~-----~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~~~l~----~L~~L~Ls~n~~~~----~~p~- 656 (1137)
+|++|++++|.+. .+|..+ .+++|++|+|++|.+...........+. +|++|+|++|.+.. .++.
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 5666666666655 233333 4566666666666665432111111122 46666666666542 2232
Q ss_pred CCCCCcccEeeccCCCCccccCccc-----cCCCcCceEeccCCcCccc----CCCCC-CCCCCceEeccCCccCCC---
Q 046314 657 PSETPSLERINLWNCTNLAWVPSSI-----QNFNHLSLLCFQGCKNLRS----FPSNL-HFVSPVNIDCSFCVNLTE--- 723 (1137)
Q Consensus 657 ~~~l~~L~~L~L~~~~~l~~~p~~i-----~~L~~L~~L~L~~c~~l~~----lp~~~-~l~~L~~L~ls~c~~l~~--- 723 (1137)
+..+++|++|+|++|......+..+ ...++|++|++++|..-.. ++..+ .+++|+.|++++|..-..
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 5666666666666665433222221 1244566666666643221 12222 145666666666542111
Q ss_pred -CCc----ccCCCcEEEecCCCccc-----cCccccCCCCCcEEecccccccccc-----cccccCCCCCcEeccccccc
Q 046314 724 -FPR----ISGNITKLNLCDTAIEE-----VPSSVECLTNLEYLYINRCKRLKRV-----STSICKLKSLIWLCLNECLN 788 (1137)
Q Consensus 724 -~~~----~~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~l-----p~~l~~l~~L~~L~L~~~~~ 788 (1137)
+.. ...+|++|++++|.+.. ++..+..+++|++|++++|.+.... +..+..+++|++|++++|..
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 111 12367777777777765 5666677778888888887654432 22233577788888888765
Q ss_pred ccc----cccccCCCCCcceecccCccccccCc-hhhccccccccccCCCCCCCEEeecCCCCCC-----cccccCCCCC
Q 046314 789 LEK----SWSELGNLKSFQYIGAHGSTISQLPH-LLSHLVSLHASLLSGLSSLNWLNLNNCALTA-----IPEEIGCLPS 858 (1137)
Q Consensus 789 ~~~----~~~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~ 858 (1137)
... ++..+..+++|+.|++++|.+..... .+.. ......++|++|+|++|.+++ ++..+..+++
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE------TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH------HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 543 45666667788888888877653211 1110 011234578888888887774 4566667778
Q ss_pred CCEEEccCCCCCcCC--C----CCCcccccceeccccccccc----cCCCC---CCCcceeeccccc
Q 046314 859 LEWLELRGNNFESLP--S----IPELPPSLKWLQASNCKRLQ----FLPEI---PSRPEELDASLLQ 912 (1137)
Q Consensus 859 L~~L~Ls~n~l~~lp--~----~~~l~~~L~~L~l~~c~~L~----~lp~l---p~~L~~L~~~~c~ 912 (1137)
|++|+|++|.++..+ . +....++|+.|++++|..-. .+|.. .++|+.|++++|.
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 888888888776432 1 11212277888887774321 33321 3577777777763
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=2.5e-21 Score=218.32 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=99.1
Q ss_pred CCcEEEecCCCccccC-ccccCCCCCcEEeccccccccc--ccccc--cCCCCCcEeccccccccc--ccc-cccCCCCC
Q 046314 730 NITKLNLCDTAIEEVP-SSVECLTNLEYLYINRCKRLKR--VSTSI--CKLKSLIWLCLNECLNLE--KSW-SELGNLKS 801 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~--lp~~l--~~l~~L~~L~L~~~~~~~--~~~-~~l~~l~~ 801 (1137)
+|++|++++|.+..++ ..++.+++|++|++++|++.+. +|..+ .++++|++|++++|.... .++ ..+..+++
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence 4555555556666665 4577777777777777776554 23333 677777777777776542 222 23456677
Q ss_pred cceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCCCCCCcccc
Q 046314 802 FQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLPSIPELPPS 881 (1137)
Q Consensus 802 L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~ 881 (1137)
|+.|++++|.+...+.. ..+..+++|++|+|++|.++.+|..+. ++|+.|+|++|+++.+|.+..++ +
T Consensus 230 L~~L~Ls~N~l~~~~~~---------~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~-~ 297 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGA---------PSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELP-Q 297 (312)
T ss_dssp CSEEECTTSCCCSSCCC---------SCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSC-E
T ss_pred CCEEECCCCcCCcccch---------hhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChhHhhCC-C
Confidence 77777777777764410 013446778888888888777777665 77888888888887777766666 7
Q ss_pred cceecccccc
Q 046314 882 LKWLQASNCK 891 (1137)
Q Consensus 882 L~~L~l~~c~ 891 (1137)
|+.|++++++
T Consensus 298 L~~L~L~~N~ 307 (312)
T 1wwl_A 298 VGNLSLKGNP 307 (312)
T ss_dssp EEEEECTTCT
T ss_pred CCEEeccCCC
Confidence 7777777764
No 74
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.81 E-value=4e-21 Score=190.49 Aligned_cols=100 Identities=22% Similarity=0.329 Sum_probs=91.7
Q ss_pred CCCcccEEEcccccccCCchHHHHHHHHhcC--CCcEEEcC-CCCCCCcchHHHHHHhh-hcceeEEEeccccccchhhH
Q 046314 6 PSCNYDVFLSFRGEDTRENFTSHLYAALCGK--KIKTFIDE-DLNRGDEISPALMKAIE-GSKISVIIFSKDYASSKWCL 81 (1137)
Q Consensus 6 ~~~~~dvFis~~~~d~r~~~~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~-~s~~~i~v~S~~y~~s~~c~ 81 (1137)
..+.|||||||+++| ++||++|+++|+++ |+++|+|+ |+.+|+.|.++|.+||+ +||++|+|+|++|++|.||.
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 468999999999999 79999999999985 69999999 99999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhh-hcCCCeEEEEEeecCc
Q 046314 82 NELVKILKCK-NLKGQTVIPIYYHVSP 107 (1137)
Q Consensus 82 ~el~~~~~~~-~~~~~~v~pvfy~v~p 107 (1137)
.|+..|+.+. +..+++||||||++-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999876 4456789999998743
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=5.5e-20 Score=220.05 Aligned_cols=218 Identities=13% Similarity=0.111 Sum_probs=190.8
Q ss_pred CCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEec
Q 046314 658 SETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLC 737 (1137)
Q Consensus 658 ~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~ 737 (1137)
..+++|++|+|++|......|..++.+++|++|+|++|......| ...+++|+.|++++| .++.+|.. .+|+.|+++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~~-~~L~~L~L~ 107 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLVG-PSIETLHAA 107 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEEC-TTCCEEECC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCCC-CCcCEEECc
Confidence 356799999999998877777899999999999999987544444 445899999999997 45555544 799999999
Q ss_pred CCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccC-CCCCcceecccCccccccC
Q 046314 738 DTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELG-NLKSFQYIGAHGSTISQLP 816 (1137)
Q Consensus 738 ~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~l~~n~i~~lp 816 (1137)
+|.+..+|.. .+++|+.|+|++|.+.+..|..++++++|+.|+|++|......|..+. .+++|+.|++++|.++.+|
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 9999998764 578999999999999998899999999999999999998887888776 7999999999999999876
Q ss_pred chhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC-CCCCcccccceecccccccc
Q 046314 817 HLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP-SIPELPPSLKWLQASNCKRL 893 (1137)
Q Consensus 817 ~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c~~L 893 (1137)
. ...+++|+.|+|++|.++.+|+.+..+++|+.|+|++|.++.+| .+..++ +|+.|++++|+..
T Consensus 186 ~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~-~L~~L~l~~N~l~ 250 (487)
T 3oja_A 186 G------------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ-NLEHFDLRGNGFH 250 (487)
T ss_dssp C------------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCT-TCCEEECTTCCBC
T ss_pred c------------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCC-CCCEEEcCCCCCc
Confidence 5 34589999999999999999988999999999999999999999 677777 9999999998755
No 76
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.81 E-value=2.6e-21 Score=190.03 Aligned_cols=103 Identities=20% Similarity=0.334 Sum_probs=92.1
Q ss_pred CCCcccEEEcccccccCCchHHH-HHHHHhcC--CCcEEEcC-CCCCCCcchHHHHHHhhhcceeEEEeccccccchhhH
Q 046314 6 PSCNYDVFLSFRGEDTRENFTSH-LYAALCGK--KIKTFIDE-DLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWCL 81 (1137)
Q Consensus 6 ~~~~~dvFis~~~~d~r~~~~~~-l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~ 81 (1137)
..+.|||||||+|+| ..||.+ |+++|+++ |+++|+|+ |+.+|+.+.++|.+||++||++|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 357899999999999 589997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhcCCCeEEEEEee-cCcccc
Q 046314 82 NELVKILKC-KNLKGQTVIPIYYH-VSPSDV 110 (1137)
Q Consensus 82 ~el~~~~~~-~~~~~~~v~pvfy~-v~p~~v 110 (1137)
.|+..|+.+ .+..+++||||||+ +++.++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 999998854 35667889999996 454433
No 77
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.80 E-value=9e-21 Score=190.80 Aligned_cols=98 Identities=20% Similarity=0.353 Sum_probs=86.1
Q ss_pred CCCcccEEEcccccccCCchHHH-HHHHHhc--CCCcEEEcC-CCCCCCcchHHHHHHhhhcceeEEEeccccccchhhH
Q 046314 6 PSCNYDVFLSFRGEDTRENFTSH-LYAALCG--KKIKTFIDE-DLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWCL 81 (1137)
Q Consensus 6 ~~~~~dvFis~~~~d~r~~~~~~-l~~~l~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~ 81 (1137)
..+.|||||||+++| .+||.+ |+++|++ +|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|++|++|.||+
T Consensus 32 ~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 467999999999999 589985 9999998 899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCCeEEEEEeec
Q 046314 82 NELVKILKCK-NLKGQTVIPIYYHV 105 (1137)
Q Consensus 82 ~el~~~~~~~-~~~~~~v~pvfy~v 105 (1137)
.|++.|+.+. ++.+++||||||+-
T Consensus 110 ~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp THHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999999754 55678899999974
No 78
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.80 E-value=1.6e-20 Score=185.91 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=90.7
Q ss_pred CcccEEEccccccc---------CCchHHHHHH-HHh-cCCCcEEEcC-CCCCCCcchHHHHHHhhhcceeEEEeccccc
Q 046314 8 CNYDVFLSFRGEDT---------RENFTSHLYA-ALC-GKKIKTFIDE-DLNRGDEISPALMKAIEGSKISVIIFSKDYA 75 (1137)
Q Consensus 8 ~~~dvFis~~~~d~---------r~~~~~~l~~-~l~-~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~ 75 (1137)
+.|||||||+++|+ |+.||.|+.. .|+ +.|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4678988665 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhh-hcCCCeEEEEEeecCcc
Q 046314 76 -SSKWCLNELVKILKCK-NLKGQTVIPIYYHVSPS 108 (1137)
Q Consensus 76 -~s~~c~~el~~~~~~~-~~~~~~v~pvfy~v~p~ 108 (1137)
.|.||..|+..|+.+. +.+++.||||+|.-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999987 66778999999886554
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.1e-21 Score=234.46 Aligned_cols=343 Identities=16% Similarity=0.067 Sum_probs=194.1
Q ss_pred cCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCC--CCC-ccc----ccceeeccc
Q 046314 550 FTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLP--ENF-KPK----NLIELNLPF 622 (1137)
Q Consensus 550 f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp--~~~-~l~----~L~~L~L~~ 622 (1137)
|..+++|+.|++++|...+. ....++..+..++ +|++|++++|.+.... ..+ .+. +|++|+|++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~--------~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~ 94 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEA--------RCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 94 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHH--------HHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred HhhcCCccEEEccCCCCCHH--------HHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccC
Confidence 66777778887776642100 0112333344443 6777777777765321 111 222 577777777
Q ss_pred CCchh-----hhhhhhhccccceeEEecCCCCCCCccCC------CCCCCcccEeeccCCCCccc----cCccccCCCcC
Q 046314 623 SKIVQ-----IWEEKRYVKAFKLKSINLSHSQYLIRIPD------PSETPSLERINLWNCTNLAW----VPSSIQNFNHL 687 (1137)
Q Consensus 623 n~i~~-----l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~------~~~l~~L~~L~L~~~~~l~~----~p~~i~~L~~L 687 (1137)
|++.. ++.... .+++|++|+|++|.+....+. ....++|++|+|++|..... ++..+..+++|
T Consensus 95 n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 95 CCLTGAGCGVLSSTLR--TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp SCCBGGGHHHHHHHTT--SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHc--cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCC
Confidence 77763 222222 344777777777775432221 23355677777777765442 34555667777
Q ss_pred ceEeccCCcCcccCCCCC------CCCCCceEeccCCccCCC----CCc---ccCCCcEEEecCCCcccc-----Ccc-c
Q 046314 688 SLLCFQGCKNLRSFPSNL------HFVSPVNIDCSFCVNLTE----FPR---ISGNITKLNLCDTAIEEV-----PSS-V 748 (1137)
Q Consensus 688 ~~L~L~~c~~l~~lp~~~------~l~~L~~L~ls~c~~l~~----~~~---~~~~L~~L~L~~~~i~~l-----p~~-i 748 (1137)
+.|++++|.....-+..+ ..++|+.|++++|..-.. ++. ...+|++|++++|.+... +.. .
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 777777765322111111 134777777777643221 232 235777788887776643 122 3
Q ss_pred cCCCCCcEEeccccccccc----ccccccCCCCCcEecccccccccccccccC-----CCCCcceecccCccccccCc-h
Q 046314 749 ECLTNLEYLYINRCKRLKR----VSTSICKLKSLIWLCLNECLNLEKSWSELG-----NLKSFQYIGAHGSTISQLPH-L 818 (1137)
Q Consensus 749 ~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~-----~l~~L~~L~l~~n~i~~lp~-~ 818 (1137)
..+++|++|++++|.+... ++..+.++++|++|++++|......+..+. ..++|+.|++++|.++.... .
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence 3577788888888766543 566666777888888887765443332222 23577888888777664311 0
Q ss_pred hhccccccccccCCCCCCCEEeecCCCCCCc-c----cccCC-CCCCCEEEccCCCCC-----cCC-CCCCcccccceec
Q 046314 819 LSHLVSLHASLLSGLSSLNWLNLNNCALTAI-P----EEIGC-LPSLEWLELRGNNFE-----SLP-SIPELPPSLKWLQ 886 (1137)
Q Consensus 819 l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l-p----~~l~~-l~~L~~L~Ls~n~l~-----~lp-~~~~l~~~L~~L~ 886 (1137)
+. ..+..+++|++|+|++|.+++. + ..+.. .++|++|+|++|.++ .+| .+..++ +|+.|+
T Consensus 333 l~-------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~ 404 (461)
T 1z7x_W 333 FS-------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH-SLRELD 404 (461)
T ss_dssp HH-------HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC-CCCEEE
T ss_pred HH-------HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC-CccEEE
Confidence 00 0123456777777777777652 2 22322 567777777777776 344 444555 777777
Q ss_pred cccccccc--------cCCCCCCCcceeecccc
Q 046314 887 ASNCKRLQ--------FLPEIPSRPEELDASLL 911 (1137)
Q Consensus 887 l~~c~~L~--------~lp~lp~~L~~L~~~~c 911 (1137)
+++|+.-. .+|.-...|+.|.+.++
T Consensus 405 l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp CCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred CCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 77764221 13333346666666554
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=5.4e-20 Score=207.30 Aligned_cols=169 Identities=19% Similarity=0.186 Sum_probs=128.6
Q ss_pred CcEEEecCCCccccCccccCC-----CCCcEEecccccccccccccccCCCCCcEecccccccccc--ccccc--CCCCC
Q 046314 731 ITKLNLCDTAIEEVPSSVECL-----TNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEK--SWSEL--GNLKS 801 (1137)
Q Consensus 731 L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~--~~~~l--~~l~~ 801 (1137)
|++|+|++|.+..+|..++.+ ++|++|+|++|.+.+..|..++++++|++|++++|...+. .+..+ ..+++
T Consensus 123 L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 202 (312)
T 1wwl_A 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202 (312)
T ss_dssp CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTT
T ss_pred ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCC
Confidence 344444445555555555555 8999999999999888889999999999999999987654 34444 89999
Q ss_pred cceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc--cccCCCCCCCEEEccCCCCCcCC-CCCCc
Q 046314 802 FQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRGNNFESLP-SIPEL 878 (1137)
Q Consensus 802 L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp-~~~~l 878 (1137)
|+.|++++|.++.++..... .+.++++|++|+|++|.+++.+ ..+..+++|+.|+|++|+++.+| .+.
T Consensus 203 L~~L~L~~N~l~~~~~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-- 273 (312)
T 1wwl_A 203 LQVLALRNAGMETPSGVCSA-------LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-- 273 (312)
T ss_dssp CCEEECTTSCCCCHHHHHHH-------HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--
T ss_pred CCEEECCCCcCcchHHHHHH-------HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--
Confidence 99999999999865432211 1346789999999999999854 45677899999999999999999 444
Q ss_pred ccccceeccccccccccCCCC--CCCcceeeccc
Q 046314 879 PPSLKWLQASNCKRLQFLPEI--PSRPEELDASL 910 (1137)
Q Consensus 879 ~~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~ 910 (1137)
+ +|+.|++++|+ ++.+|.+ .++|+.|++.+
T Consensus 274 ~-~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 274 A-KLSVLDLSYNR-LDRNPSPDELPQVGNLSLKG 305 (312)
T ss_dssp S-EEEEEECCSSC-CCSCCCTTTSCEEEEEECTT
T ss_pred C-CceEEECCCCC-CCCChhHhhCCCCCEEeccC
Confidence 4 99999999984 5555542 13455555544
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=4.7e-18 Score=188.92 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=147.8
Q ss_pred ceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCC
Q 046314 639 KLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFC 718 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c 718 (1137)
+|+.++++++.+....+.+. ++|+.|+|++|......+..+..+++|+.|+|++|. +..+|..
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------------- 73 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-------------- 73 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC--------------
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC--------------
Confidence 56666666655433222232 566666776666555556667777777777777653 2222221
Q ss_pred ccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCC
Q 046314 719 VNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGN 798 (1137)
Q Consensus 719 ~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~ 798 (1137)
....+|+.|++++|.+..+|..+..+++|++|++++|.+.+..+..|.++++|++|+|++|......+..+..
T Consensus 74 -------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 74 -------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp -------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred -------CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence 1223566777777888888888888999999999999888777788889999999999998877666667888
Q ss_pred CCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCc
Q 046314 799 LKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 799 l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
+++|+.|++++|.++.+|... +.++++|+.|+|++|.++.+|..+..+++|+.|+|++|.+..
T Consensus 147 l~~L~~L~L~~N~l~~l~~~~----------~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPAGL----------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTCCEEECTTSCCSCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCCCEEECCCCcCCccCHHH----------hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 899999999999988887643 567889999999999999999988888899999999987753
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=3.9e-18 Score=188.59 Aligned_cols=217 Identities=15% Similarity=0.159 Sum_probs=109.2
Q ss_pred EEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCcc
Q 046314 597 HLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLA 675 (1137)
Q Consensus 597 ~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~ 675 (1137)
+..+..+..+|..+ +.+|++|+|++|++..++.. .+..+++|++|+|++|.+....+. +..+++|++|+|++|....
T Consensus 13 ~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 13 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp ECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EecCCCccccCCCC-CCCccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 33344455555433 23455555555555444321 122233555555555554333332 4555555555555554444
Q ss_pred ccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCc-cccCCCCC
Q 046314 676 WVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPS-SVECLTNL 754 (1137)
Q Consensus 676 ~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L 754 (1137)
..+..+.++++|++|++++| .+..++. .++.+++|
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n--------------------------------------------~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVET--------------------------------------------NLASLENFPIGHLKTL 126 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTS--------------------------------------------CCCCSTTCCCTTCTTC
T ss_pred cChhhhcCCccccEEECCCC--------------------------------------------CccccCchhcccCCCC
Confidence 44444555555555555443 2222222 24445555
Q ss_pred cEEecccccccc-cccccccCCCCCcEecccccccccccccccCCCCCcc----eecccCccccccCchhhccccccccc
Q 046314 755 EYLYINRCKRLK-RVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQ----YIGAHGSTISQLPHLLSHLVSLHASL 829 (1137)
Q Consensus 755 ~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~----~L~l~~n~i~~lp~~l~~l~~L~~~~ 829 (1137)
++|++++|.+.. .+|..+.++++|++|++++|......+..+..+++|+ .|++++|.+..++...
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~---------- 196 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---------- 196 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS----------
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc----------
Confidence 555555555443 2355555555555555555554443333444333333 5566666666555422
Q ss_pred cCCCCCCCEEeecCCCCCCcccc-cCCCCCCCEEEccCCCCC
Q 046314 830 LSGLSSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRGNNFE 870 (1137)
Q Consensus 830 l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~ 870 (1137)
....+|+.|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 197 -~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 197 -FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp -SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred -cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 1123566677777766665543 466677777777777665
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2e-17 Score=182.10 Aligned_cols=199 Identities=20% Similarity=0.308 Sum_probs=101.5
Q ss_pred ceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccC
Q 046314 639 KLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSF 717 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~ 717 (1137)
+++.++++++.+.. +|. +. ++|++|+|++|......+..+.++++|++|+|++|. +..+|....
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~----------- 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIF----------- 81 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTT-----------
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhh-----------
Confidence 34555665555432 332 21 456666666654443333456666666666665542 222222110
Q ss_pred CccCCCCCcccCCCcEEEecCCCccccCcc-ccCCCCCcEEecccccccccccccccCCCCCcEeccccccccccccccc
Q 046314 718 CVNLTEFPRISGNITKLNLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSEL 796 (1137)
Q Consensus 718 c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l 796 (1137)
....+|++|++++|.+..+|.. +..+++|++|++++|.+....+..+.++++|++|++++|......+..+
T Consensus 82 --------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 153 (270)
T 2o6q_A 82 --------KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153 (270)
T ss_dssp --------SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred --------cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc
Confidence 0011333344444455555433 4566666666666666655555556666666666666665444333445
Q ss_pred CCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCCCCC
Q 046314 797 GNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGNNFE 870 (1137)
Q Consensus 797 ~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 870 (1137)
..+++|+.|++++|.++.+|... +.++++|++|+|++|.++.+|. .+..+++|+.|+|++|.+.
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~----------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGA----------FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTT----------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcccceeEecCCcCcEeChhH----------hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 55556666666555555554321 3345555555555555555443 2445555555555555543
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=2.1e-17 Score=181.91 Aligned_cols=202 Identities=17% Similarity=0.195 Sum_probs=132.9
Q ss_pred CceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCC
Q 046314 592 KLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNC 671 (1137)
Q Consensus 592 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~ 671 (1137)
.++.++++++.++.+|..+. .+|++|+|++|++..++.. .+..+++|++|+|++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSK------------------------AFHRLTKLRLLYLNDN 71 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTT------------------------SSSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHH------------------------HhcCCCCCCEEECCCC
Confidence 46677777777777776442 4555555555555544321 1344444444444444
Q ss_pred CCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCcc-ccC
Q 046314 672 TNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSS-VEC 750 (1137)
Q Consensus 672 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~ 750 (1137)
......+..+..+++|++|+|++|. +..+|... .....+|++|++++|.+..+|.. +..
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~ 131 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGV-------------------FDQLVNLAELRLDRNQLKSLPPRVFDS 131 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTT-------------------TTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhH-------------------cccccCCCEEECCCCccCeeCHHHhCc
Confidence 3332222233445555555555442 22222110 00112445555555666666544 788
Q ss_pred CCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhcccccccccc
Q 046314 751 LTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLL 830 (1137)
Q Consensus 751 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l 830 (1137)
+++|++|+|++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.++.+|... +
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~ 201 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA----------F 201 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT----------T
T ss_pred CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH----------h
Confidence 999999999999988776677899999999999999877766777999999999999999999888642 5
Q ss_pred CCCCCCCEEeecCCCCCC
Q 046314 831 SGLSSLNWLNLNNCALTA 848 (1137)
Q Consensus 831 ~~l~~L~~L~Ls~n~l~~ 848 (1137)
..+++|+.|+|++|.+..
T Consensus 202 ~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred ccccCCCEEEecCCCeeC
Confidence 678999999999998753
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=9.5e-18 Score=185.44 Aligned_cols=153 Identities=21% Similarity=0.166 Sum_probs=123.7
Q ss_pred CCcEEEecCCCccccC-ccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccc-ccccccCCCCCcceecc
Q 046314 730 NITKLNLCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLE-KSWSELGNLKSFQYIGA 807 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l 807 (1137)
+|++|++++|.+..++ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.... .+|..+..+++|+.|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 3444444556666665 458889999999999999888777789999999999999998766 36889999999999999
Q ss_pred cCccccccCc-hhhccccccccccCCCCCCC-EEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC--CCCCcccccc
Q 046314 808 HGSTISQLPH-LLSHLVSLHASLLSGLSSLN-WLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLK 883 (1137)
Q Consensus 808 ~~n~i~~lp~-~l~~l~~L~~~~l~~l~~L~-~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~ 883 (1137)
++|.++.++. .+..+. .++.|. .|++++|.++.++.......+|+.|+|++|+++.+| .+..++ +|+
T Consensus 157 s~N~l~~~~~~~~~~l~--------~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~ 227 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLH--------QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT-SLQ 227 (276)
T ss_dssp CSSCCCEECGGGGHHHH--------TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCC-SCC
T ss_pred CCCCCCcCCHHHhhhhh--------hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccc-ccc
Confidence 9999998764 333322 234444 899999999998887777779999999999999998 356777 999
Q ss_pred eecccccc
Q 046314 884 WLQASNCK 891 (1137)
Q Consensus 884 ~L~l~~c~ 891 (1137)
.|++++++
T Consensus 228 ~L~l~~N~ 235 (276)
T 2z62_A 228 KIWLHTNP 235 (276)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 99999876
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=9.5e-18 Score=188.34 Aligned_cols=216 Identities=18% Similarity=0.232 Sum_probs=125.0
Q ss_pred ccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEe
Q 046314 612 PKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLC 691 (1137)
Q Consensus 612 l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~ 691 (1137)
+.++..+.+..+.+..... ...+++|+.|++++|.+. .+|.+..+++|++|+|++|... .++. +..+++|++|+
T Consensus 18 l~~~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~-~l~~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~ 91 (308)
T 1h6u_A 18 LANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELE 91 (308)
T ss_dssp HHHHHHHHTTCSSTTSEEC---HHHHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEE
T ss_pred HHHHHHHHhCCCCcCceec---HHHcCCcCEEEeeCCCcc-CchhhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEE
Confidence 3444555555555554321 112337888888887643 4566777788888888877543 3444 77777777777
Q ss_pred ccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEeccccccccccccc
Q 046314 692 FQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTS 771 (1137)
Q Consensus 692 L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 771 (1137)
|++|. +..+|....+ .+|+.|++++|.+..+|. +..+++|+.|++++|.+.+..+
T Consensus 92 L~~n~-l~~~~~~~~l---------------------~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-- 146 (308)
T 1h6u_A 92 LSGNP-LKNVSAIAGL---------------------QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-- 146 (308)
T ss_dssp CCSCC-CSCCGGGTTC---------------------TTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--
T ss_pred ccCCc-CCCchhhcCC---------------------CCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--
Confidence 77764 3322211111 244555555566666554 6666777777777766544332
Q ss_pred ccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc
Q 046314 772 ICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE 851 (1137)
Q Consensus 772 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~ 851 (1137)
+..+++|+.|++++|.... ++. +..+++|+.|++++|.++.++. +..+++|++|+|++|.+++++.
T Consensus 147 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~------------l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP------------LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG------------GGGCTTCCEEECTTSCCCBCGG
T ss_pred ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh------------hcCCCCCCEEEccCCccCcccc
Confidence 5566666666666665433 222 5566666666666666655543 3345566666666666665553
Q ss_pred ccCCCCCCCEEEccCCCCCcCC
Q 046314 852 EIGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 852 ~l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
+..+++|+.|+|++|.++..|
T Consensus 213 -l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 213 -LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp -GTTCTTCCEEEEEEEEEECCC
T ss_pred -ccCCCCCCEEEccCCeeecCC
Confidence 555666666666666555544
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1e-17 Score=180.79 Aligned_cols=130 Identities=20% Similarity=0.182 Sum_probs=78.4
Q ss_pred ccCCCCCcEEecccccccccccccccCCCCCc---Eeccccc-ccccccccccCCCCCcc-eecccCccccccCchhhcc
Q 046314 748 VECLTNLEYLYINRCKRLKRVSTSICKLKSLI---WLCLNEC-LNLEKSWSELGNLKSFQ-YIGAHGSTISQLPHLLSHL 822 (1137)
Q Consensus 748 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~---~L~L~~~-~~~~~~~~~l~~l~~L~-~L~l~~n~i~~lp~~l~~l 822 (1137)
+..+++|++|++++|.+.+ +|. +..+++|+ +|++++| ......+..+.++++|+ .|++++|.++.+|...
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~--- 175 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA--- 175 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT---
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh---
Confidence 4455555555555555433 343 45555555 6666666 33333333466666777 7777777666666532
Q ss_pred ccccccccCCCCCCCEEeecCC-CCCCcc-cccCCC-CCCCEEEccCCCCCcCCCCCCcccccceeccccccc
Q 046314 823 VSLHASLLSGLSSLNWLNLNNC-ALTAIP-EEIGCL-PSLEWLELRGNNFESLPSIPELPPSLKWLQASNCKR 892 (1137)
Q Consensus 823 ~~L~~~~l~~l~~L~~L~Ls~n-~l~~lp-~~l~~l-~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~c~~ 892 (1137)
+.. ++|+.|+|++| .++.+| ..+..+ ++|+.|+|++|+++.+|.. .++ +|+.|++.++..
T Consensus 176 -------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~-~L~~L~l~~~~~ 238 (239)
T 2xwt_C 176 -------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLE-HLKELIARNTWT 238 (239)
T ss_dssp -------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCT-TCSEEECTTC--
T ss_pred -------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-Hhc-cCceeeccCccC
Confidence 233 56777888887 477764 456777 7888888888888877733 444 777777776643
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=2.5e-17 Score=181.57 Aligned_cols=222 Identities=18% Similarity=0.239 Sum_probs=142.4
Q ss_pred ccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEe
Q 046314 612 PKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLC 691 (1137)
Q Consensus 612 l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~ 691 (1137)
+.++..+++..+.+..... .. .+++|+.|++++|.+ ..++.+..+++|++|++++|.... + +.+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~~~-~~--~l~~L~~L~l~~~~i-~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVT-QN--ELNSIDQIIANNSDI-KSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSEEC-HH--HHTTCCEEECTTSCC-CCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCcccccccc-cc--cccceeeeeeCCCCc-ccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEE
Confidence 3445555555555544321 12 233677777776653 344455566666666666654332 2 2444555555555
Q ss_pred ccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCcc-ccCCCCCcEEecccccccccccc
Q 046314 692 FQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVST 770 (1137)
Q Consensus 692 L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~ 770 (1137)
+++ |.+..+|.. +..+++|++|++++|.+.+..+.
T Consensus 92 L~~--------------------------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 127 (272)
T 3rfs_A 92 LTG--------------------------------------------NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127 (272)
T ss_dssp CTT--------------------------------------------SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCC--------------------------------------------CccCccChhHhcCCcCCCEEECCCCcCCccCHH
Confidence 544 444444433 56677777777777776666666
Q ss_pred cccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc
Q 046314 771 SICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP 850 (1137)
Q Consensus 771 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp 850 (1137)
.+.++++|++|++++|......+..+..+++|+.|++++|.++.+|... +.++++|++|+|++|.++++|
T Consensus 128 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV----------FDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------TTTCTTCCEEECCSSCCSCCC
T ss_pred HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH----------hcCCccCCEEECCCCcCCccC
Confidence 6777777777777777665555555677888888888888777766532 556788999999999888865
Q ss_pred c-ccCCCCCCCEEEccCCCCCcCCCCCCcccccceeccccccccccCCCC
Q 046314 851 E-EIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASNCKRLQFLPEI 899 (1137)
Q Consensus 851 ~-~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~c~~L~~lp~l 899 (1137)
. .+..+++|+.|+|++|.+.. .++ +|+.|+++.+.....+|..
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~-----~~~-~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDC-----TCP-GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC-----CTT-TTHHHHHHHHHTGGGBBCT
T ss_pred HHHHhCCcCCCEEEccCCCccc-----cCc-HHHHHHHHHHhCCCcccCc
Confidence 4 46889999999999997764 334 7888888877655555543
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=7.5e-17 Score=179.19 Aligned_cols=149 Identities=21% Similarity=0.205 Sum_probs=102.3
Q ss_pred CCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccC
Q 046314 730 NITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG 809 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 809 (1137)
+|+.|+|++|.+..+|.. +.+++|++|+|++|.+. .+|..+.++++|++|++++|......+..|.++++|+.|++++
T Consensus 56 ~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 56 RLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp TCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred CCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence 556666666777776654 66777777777777654 5666677777777777777766655556677777777777777
Q ss_pred ccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccc-cCCCCCCCEEEccCCCCCcCC-CCCCcccccceecc
Q 046314 810 STISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRGNNFESLP-SIPELPPSLKWLQA 887 (1137)
Q Consensus 810 n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l 887 (1137)
|.++.+|... +..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+++.+| .+...+ +|+.|++
T Consensus 134 N~l~~~~~~~----------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~-~L~~l~L 202 (290)
T 1p9a_G 134 NELKTLPPGL----------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFL 202 (290)
T ss_dssp SCCCCCCTTT----------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-CCSEEEC
T ss_pred CCCCccChhh----------cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccc-cCCeEEe
Confidence 7777666532 45667777777777777776654 466777777777777777777 555555 6667766
Q ss_pred cccc
Q 046314 888 SNCK 891 (1137)
Q Consensus 888 ~~c~ 891 (1137)
.+++
T Consensus 203 ~~Np 206 (290)
T 1p9a_G 203 HGNP 206 (290)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=185.28 Aligned_cols=222 Identities=16% Similarity=0.132 Sum_probs=114.0
Q ss_pred ccceeecccCCchh--hhhhhhhccccceeEEecCCCCCCCccCC-C--CCCCcccEeeccCCCCccccC----ccccCC
Q 046314 614 NLIELNLPFSKIVQ--IWEEKRYVKAFKLKSINLSHSQYLIRIPD-P--SETPSLERINLWNCTNLAWVP----SSIQNF 684 (1137)
Q Consensus 614 ~L~~L~L~~n~i~~--l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~--~~l~~L~~L~L~~~~~l~~~p----~~i~~L 684 (1137)
.++.|.+.++.+.. +........+++|++|+|++|.+....|. + ..+++|++|+|++|......+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 34455555554431 11122233344788888888887766665 3 778888888888876655433 233456
Q ss_pred CcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccC-ccccCCCCCcEEeccccc
Q 046314 685 NHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVP-SSVECLTNLEYLYINRCK 763 (1137)
Q Consensus 685 ~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~ 763 (1137)
++|++|+|++|. +..+| ..+..+++|++|+|++|+
T Consensus 145 ~~L~~L~Ls~n~--------------------------------------------l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 145 PGLKVLSIAQAH--------------------------------------------SPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp SCCCEEEEECCS--------------------------------------------SCCCCTTSCCCCTTCCEEECCSCT
T ss_pred cCCCEEEeeCCC--------------------------------------------cchhhHHHhccCCCCCEEECCCCC
Confidence 666666666544 33222 224444555555555554
Q ss_pred cccc--cc--ccccCCCCCcEeccccccccccccc----ccCCCCCcceecccCcccccc-CchhhccccccccccCCCC
Q 046314 764 RLKR--VS--TSICKLKSLIWLCLNECLNLEKSWS----ELGNLKSFQYIGAHGSTISQL-PHLLSHLVSLHASLLSGLS 834 (1137)
Q Consensus 764 ~l~~--lp--~~l~~l~~L~~L~L~~~~~~~~~~~----~l~~l~~L~~L~l~~n~i~~l-p~~l~~l~~L~~~~l~~l~ 834 (1137)
+.+. ++ ..+..+++|++|++++|... .++. .+..+++|+.|++++|.+..+ |..+.. +..++
T Consensus 181 l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~--------~~~~~ 251 (310)
T 4glp_A 181 GLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR--------CMWSS 251 (310)
T ss_dssp TCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS--------CCCCT
T ss_pred CccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh--------ccCcC
Confidence 3321 11 11234555555555555432 1111 134445555555555555543 332221 12234
Q ss_pred CCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCCCCCCcccccceecccccc
Q 046314 835 SLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 835 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~c~ 891 (1137)
+|++|+|++|.++.+|..+. ++|+.|+|++|+++.+|.+..++ +|+.|++++++
T Consensus 252 ~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~-~L~~L~L~~N~ 305 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELP-EVDNLTLDGNP 305 (310)
T ss_dssp TCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCC-CCSCEECSSTT
T ss_pred cCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCC-CccEEECcCCC
Confidence 55666666666655555443 55666666666666555444444 56666665543
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=5.2e-17 Score=185.98 Aligned_cols=236 Identities=21% Similarity=0.254 Sum_probs=145.5
Q ss_pred eEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC--CCCCCcccEeec-cC
Q 046314 594 KYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD--PSETPSLERINL-WN 670 (1137)
Q Consensus 594 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~~~l~~L~~L~L-~~ 670 (1137)
+.++.+++.++++|..+ +.++++|+|++|+|+.++.+. +..+++|++|+|++|++...+|. |.++++|+++.+ .+
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTS-STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHH-HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45677778888888766 467888888888888776542 33444888888888887776664 577877776444 44
Q ss_pred CCCccccCccccCCCcCceEeccCCcCcccCCCCC--CCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCcc-
Q 046314 671 CTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNL--HFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSS- 747 (1137)
Q Consensus 671 ~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~- 747 (1137)
|......|..+..+++|++|++++|. +..+|... ....+..|++.++..+. .+|..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~--------------------~l~~~~ 148 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIH--------------------TIERNS 148 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCC--------------------EECTTS
T ss_pred CcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccc--------------------cccccc
Confidence 44444445677888888888888764 44444432 23344445554444443 33322
Q ss_pred ccCC-CCCcEEecccccccccccccccCCCCCcEeccccccccccccc-ccCCCCCcceecccCccccccCchhhccccc
Q 046314 748 VECL-TNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWS-ELGNLKSFQYIGAHGSTISQLPHLLSHLVSL 825 (1137)
Q Consensus 748 i~~l-~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L 825 (1137)
+..+ ..|+.|+|++|.+.. +|.......+|++|++++|..++.+|. .|..+++|+.|++++|+|+.+|..
T Consensus 149 f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~------- 220 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY------- 220 (350)
T ss_dssp STTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS-------
T ss_pred hhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh-------
Confidence 2222 234555555554332 333333344555566555444555543 456777777777777777777652
Q ss_pred cccccCCCCCCCEEeecCC-CCCCcccccCCCCCCCEEEccCC
Q 046314 826 HASLLSGLSSLNWLNLNNC-ALTAIPEEIGCLPSLEWLELRGN 867 (1137)
Q Consensus 826 ~~~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~Ls~n 867 (1137)
.+.+|+.|.+.++ ++..+|. +..+++|+.+++.++
T Consensus 221 ------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 221 ------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp ------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred ------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 3566677766655 5666774 788899999998763
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=187.65 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=121.4
Q ss_pred ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccc--c--ccccCCCCCcceecccCccccccCchhhccc
Q 046314 748 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEK--S--WSELGNLKSFQYIGAHGSTISQLPHLLSHLV 823 (1137)
Q Consensus 748 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~--~--~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~ 823 (1137)
+..+++|++|+|++|.+.+..|..++++++|++|+|++|..... + +..+..+++|+.|++++|.++.++.....
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 218 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA-- 218 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH--
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH--
Confidence 45789999999999999888889999999999999999986542 2 23347899999999999999876653211
Q ss_pred cccccccCCCCCCCEEeecCCCCCCc-ccccCCC---CCCCEEEccCCCCCcCC-CCCCcccccceeccccccccccCCC
Q 046314 824 SLHASLLSGLSSLNWLNLNNCALTAI-PEEIGCL---PSLEWLELRGNNFESLP-SIPELPPSLKWLQASNCKRLQFLPE 898 (1137)
Q Consensus 824 ~L~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l---~~L~~L~Ls~n~l~~lp-~~~~l~~~L~~L~l~~c~~L~~lp~ 898 (1137)
.+.++++|++|+|++|.++++ |..+..+ ++|++|+|++|+++.+| .+. ++|+.|++++|+ ++.+|.
T Consensus 219 -----l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~-l~~~~~ 289 (310)
T 4glp_A 219 -----LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNR-LNRAPQ 289 (310)
T ss_dssp -----HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCC-CCSCCC
T ss_pred -----HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCc-CCCCch
Confidence 134578999999999999985 8777766 79999999999999999 443 499999999985 444443
Q ss_pred --CCCCcceeecccc
Q 046314 899 --IPSRPEELDASLL 911 (1137)
Q Consensus 899 --lp~~L~~L~~~~c 911 (1137)
-.++|+.|++++.
T Consensus 290 ~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 290 PDELPEVDNLTLDGN 304 (310)
T ss_dssp TTSCCCCSCEECSST
T ss_pred hhhCCCccEEECcCC
Confidence 3356677766654
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.7e-19 Score=222.76 Aligned_cols=345 Identities=16% Similarity=0.079 Sum_probs=180.4
Q ss_pred CCCCCcEEEEecCCCCCccccccCCCCceecCCCCCC-CCCCceEEEEecCCC-C--CCCCCC-cccccceeecccCCch
Q 046314 552 NMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDY-LPEKLKYLHLHKYPL-R--TLPENF-KPKNLIELNLPFSKIV 626 (1137)
Q Consensus 552 ~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~-l~~~L~~L~l~~~~l-~--~lp~~~-~l~~L~~L~L~~n~i~ 626 (1137)
.+++|+.|+++++... ...+..+.. .+.+|++|++++|.- . .++... .+++|++|+|++|.+.
T Consensus 110 ~~~~L~~L~L~~~~i~------------~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 177 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVS------------DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177 (592)
T ss_dssp HCTTCCEEEEESCBCC------------HHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE
T ss_pred hCCCCCeEEeeccEec------------HHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc
Confidence 6777888888765310 011111111 223477787777651 1 111112 5677788888877654
Q ss_pred hhh---hhhhhccccceeEEecCCCCCCC----ccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCc
Q 046314 627 QIW---EEKRYVKAFKLKSINLSHSQYLI----RIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNL 698 (1137)
Q Consensus 627 ~l~---~~~~~~~l~~L~~L~Ls~n~~~~----~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l 698 (1137)
... -......+++|+.|+|++|.+.. .++. +..+++|++|++++|... .+|..+..+++|+.|+++++...
T Consensus 178 ~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNED 256 (592)
T ss_dssp CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCC
T ss_pred CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccc
Confidence 321 11112234478888887777541 2222 346677888888776543 35666777777777777653322
Q ss_pred c---cCCCCC-CCCCCceEeccCCccCCCCCc---ccCCCcEEEecCCCccc--cCccccCCCCCcEEeccccccccccc
Q 046314 699 R---SFPSNL-HFVSPVNIDCSFCVNLTEFPR---ISGNITKLNLCDTAIEE--VPSSVECLTNLEYLYINRCKRLKRVS 769 (1137)
Q Consensus 699 ~---~lp~~~-~l~~L~~L~ls~c~~l~~~~~---~~~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp 769 (1137)
. ..+..+ .+.+|+.|.++++ ....+|. ...+|++|+|++|.+.. ++..+..+++|+.|+++++-....++
T Consensus 257 ~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~ 335 (592)
T 3ogk_B 257 IGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE 335 (592)
T ss_dssp TTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH
T ss_pred cchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHH
Confidence 1 111222 2566777776653 2223333 23467777777776542 22335667777777777443333344
Q ss_pred ccccCCCCCcEecccc----------cccccc--cccccCCCCCcceecccCccccc-cCchhhc-cccccccc------
Q 046314 770 TSICKLKSLIWLCLNE----------CLNLEK--SWSELGNLKSFQYIGAHGSTISQ-LPHLLSH-LVSLHASL------ 829 (1137)
Q Consensus 770 ~~l~~l~~L~~L~L~~----------~~~~~~--~~~~l~~l~~L~~L~l~~n~i~~-lp~~l~~-l~~L~~~~------ 829 (1137)
..+..+++|++|++++ |..... ++.....+++|+.|+++.+.++. .+..+.. +++|+.+.
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 4445567777777773 433321 22223446667777665555542 1111111 11111111
Q ss_pred ----------------cCCCCCCCEEeecCCC--CCC-cccc-cCCCCCCCEEEccCCCCCc--CC-CCCCcccccceec
Q 046314 830 ----------------LSGLSSLNWLNLNNCA--LTA-IPEE-IGCLPSLEWLELRGNNFES--LP-SIPELPPSLKWLQ 886 (1137)
Q Consensus 830 ----------------l~~l~~L~~L~Ls~n~--l~~-lp~~-l~~l~~L~~L~Ls~n~l~~--lp-~~~~l~~~L~~L~ 886 (1137)
+.++++|++|+|++|. +++ .+.. ...+++|+.|+|++|+++. ++ .+..++ +|+.|+
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~ 494 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP-NLQKLE 494 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT-TCCEEE
T ss_pred CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc-ccCeee
Confidence 2236677777776543 443 2222 2346677777777777653 22 234444 777777
Q ss_pred ccccccccc--CCC---CCCCcceeeccccc
Q 046314 887 ASNCKRLQF--LPE---IPSRPEELDASLLQ 912 (1137)
Q Consensus 887 l~~c~~L~~--lp~---lp~~L~~L~~~~c~ 912 (1137)
|++|+ +.. ++. -.++|+.|++++|.
T Consensus 495 l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 495 MRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 77776 221 121 13567777777776
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=6.6e-17 Score=174.51 Aligned_cols=167 Identities=16% Similarity=0.098 Sum_probs=131.1
Q ss_pred EEecCCC-ccccCc-cccCCCCCcEEeccc-ccccccccccccCCCCCcEecccccccccccccccCCCCCcc---eecc
Q 046314 734 LNLCDTA-IEEVPS-SVECLTNLEYLYINR-CKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQ---YIGA 807 (1137)
Q Consensus 734 L~L~~~~-i~~lp~-~i~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~---~L~l 807 (1137)
|++++|. ++.+|. .+..+++|++|++++ |.+....+..|.++++|++|++++|.... +|. +..+++|+ .|++
T Consensus 60 L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l 137 (239)
T 2xwt_C 60 IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEI 137 (239)
T ss_dssp EEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEE
T ss_pred EeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEEC
Confidence 3333343 555554 477889999999998 66666556789999999999999998655 665 88888888 9999
Q ss_pred cCc-cccccCchhhccccccccccCCCCCCC-EEeecCCCCCCcccccCCCCCCCEEEccCCC-CCcCC--CCCCc-ccc
Q 046314 808 HGS-TISQLPHLLSHLVSLHASLLSGLSSLN-WLNLNNCALTAIPEEIGCLPSLEWLELRGNN-FESLP--SIPEL-PPS 881 (1137)
Q Consensus 808 ~~n-~i~~lp~~l~~l~~L~~~~l~~l~~L~-~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~-l~~lp--~~~~l-~~~ 881 (1137)
++| .++.+|.. .+.++++|+ +|++++|.++.+|......++|+.|+|++|. ++.+| .+..+ + +
T Consensus 138 ~~N~~l~~i~~~----------~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~-~ 206 (239)
T 2xwt_C 138 TDNPYMTSIPVN----------AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS-G 206 (239)
T ss_dssp ESCTTCCEECTT----------TTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSB-C
T ss_pred CCCcchhhcCcc----------cccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcccc-C
Confidence 999 89888763 266789999 9999999999988766555899999999994 99987 56777 6 9
Q ss_pred cceeccccccccccCCC-CCCCcceeeccccccc
Q 046314 882 LKWLQASNCKRLQFLPE-IPSRPEELDASLLQKL 914 (1137)
Q Consensus 882 L~~L~l~~c~~L~~lp~-lp~~L~~L~~~~c~~L 914 (1137)
|+.|++++++ ++.+|. .+++|+.|++.++..|
T Consensus 207 L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 207 PSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp CSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred CcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence 9999999865 556654 4678999998887654
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=5e-17 Score=179.10 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=53.1
Q ss_pred CceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccC
Q 046314 592 KLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWN 670 (1137)
Q Consensus 592 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~ 670 (1137)
+|+.|++++|.++.++....+++|++|+|++|.+..+. . ...+++|++|+|++|.+....+. +..+++|++|+|++
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G--GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h--hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 55666666666665554445556666666666555442 1 22233566666666654443333 45555566666655
Q ss_pred CCCccccCccccCCCcCceEeccCC
Q 046314 671 CTNLAWVPSSIQNFNHLSLLCFQGC 695 (1137)
Q Consensus 671 ~~~l~~~p~~i~~L~~L~~L~L~~c 695 (1137)
|......+..++.+++|++|++++|
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCHHHhccCCCCCEEECCCC
Confidence 5444333334455555555555554
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.1e-16 Score=179.52 Aligned_cols=194 Identities=20% Similarity=0.216 Sum_probs=108.4
Q ss_pred CceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCC
Q 046314 592 KLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNC 671 (1137)
Q Consensus 592 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~ 671 (1137)
+|++|++++|.++.+|....+++|++|+|++|.+..++. ...+++|++|+|++|.+. .++.+..+++|++|++++|
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTST 117 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECTTS
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCC-CchhhcCCCCCCEEECCCC
Confidence 556666666666666543355666666666666655543 223336666666666532 3344555566666666655
Q ss_pred CCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCC
Q 046314 672 TNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECL 751 (1137)
Q Consensus 672 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l 751 (1137)
.... ++. +..+++|+.|++++| .+..++. +..+
T Consensus 118 ~l~~-~~~-l~~l~~L~~L~l~~n--------------------------------------------~l~~~~~-l~~l 150 (308)
T 1h6u_A 118 QITD-VTP-LAGLSNLQVLYLDLN--------------------------------------------QITNISP-LAGL 150 (308)
T ss_dssp CCCC-CGG-GTTCTTCCEEECCSS--------------------------------------------CCCCCGG-GGGC
T ss_pred CCCC-chh-hcCCCCCCEEECCCC--------------------------------------------ccCcCcc-ccCC
Confidence 4322 222 455555555555443 3333333 4455
Q ss_pred CCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccC
Q 046314 752 TNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLS 831 (1137)
Q Consensus 752 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~ 831 (1137)
++|+.|++++|.+....+ +.++++|+.|++++|......+ +..+++|+.|++++|.+..++. +.
T Consensus 151 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~------------l~ 214 (308)
T 1h6u_A 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP------------LA 214 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG------------GT
T ss_pred CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc------------cc
Confidence 555555655555443222 5556666666666655433222 5666777777777777766553 45
Q ss_pred CCCCCCEEeecCCCCCCcccc
Q 046314 832 GLSSLNWLNLNNCALTAIPEE 852 (1137)
Q Consensus 832 ~l~~L~~L~Ls~n~l~~lp~~ 852 (1137)
.+++|+.|+|++|.++..|..
T Consensus 215 ~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp TCTTCCEEEEEEEEEECCCEE
T ss_pred CCCCCCEEEccCCeeecCCee
Confidence 677788888888877766643
No 97
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=1.7e-18 Score=213.71 Aligned_cols=342 Identities=15% Similarity=0.097 Sum_probs=225.6
Q ss_pred cccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCC------------CCCCCceEEEEecCCCCCC-CCCC-c-c
Q 046314 548 RAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLD------------YLPEKLKYLHLHKYPLRTL-PENF-K-P 612 (1137)
Q Consensus 548 ~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~------------~l~~~L~~L~l~~~~l~~l-p~~~-~-l 612 (1137)
..+..+++|+.|+++++.... ....+|.... .+ ++|++|++++|.+... +..+ . +
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~---------~~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~ 136 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAA---------MFNLIPENWGGYVTPWVTEISNNL-RQLKSVHFRRMIVSDLDLDRLAKAR 136 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGG---------GGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEecCCcchh---------hcccccccccccchHHHHHHHhhC-CCCCeEEeeccEecHHHHHHHHHhc
Confidence 456778899999998764210 0112222222 33 4899999999976522 1112 2 2
Q ss_pred -cccceeecccCC-chhhhhhhhhccccceeEEecCCCCCCCc----cCC-CCCCCcccEeeccCCCCc----cccCccc
Q 046314 613 -KNLIELNLPFSK-IVQIWEEKRYVKAFKLKSINLSHSQYLIR----IPD-PSETPSLERINLWNCTNL----AWVPSSI 681 (1137)
Q Consensus 613 -~~L~~L~L~~n~-i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~----~p~-~~~l~~L~~L~L~~~~~l----~~~p~~i 681 (1137)
.+|++|+|++|. +....-......+++|++|+|++|.+... ++. ...+++|++|++++|... ..++..+
T Consensus 137 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 459999999986 22111111122456999999999976443 222 256899999999998765 3455566
Q ss_pred cCCCcCceEeccCCcCcccCCCCC-CCCCCceEeccCCccCCC---CC---cccCCCcEEEecCCCccccCccccCCCCC
Q 046314 682 QNFNHLSLLCFQGCKNLRSFPSNL-HFVSPVNIDCSFCVNLTE---FP---RISGNITKLNLCDTAIEEVPSSVECLTNL 754 (1137)
Q Consensus 682 ~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ls~c~~l~~---~~---~~~~~L~~L~L~~~~i~~lp~~i~~l~~L 754 (1137)
.++++|+.|++++|.. ..+|..+ .+++|+.|+++.+..... .+ ....+|+.|++.++....+|..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 7899999999999754 3455444 378999999986443311 11 23348899999998888899889999999
Q ss_pred cEEecccccccccc-cccccCCCCCcEecccccccccccccccCCCCCcceecccC-----------ccccc--cCchhh
Q 046314 755 EYLYINRCKRLKRV-STSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG-----------STISQ--LPHLLS 820 (1137)
Q Consensus 755 ~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~-----------n~i~~--lp~~l~ 820 (1137)
++|+|++|.+.... +..+..+++|++|+++++.....++.....+++|+.|++++ +.++. ++..
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-- 373 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-- 373 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH--
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH--
Confidence 99999999854433 34468899999999995544444555557789999999993 44442 1111
Q ss_pred ccccccccccCCCCCCCEEeecCCCCCC-cccccCC-CCCCCEEEcc----CCCCCcCC-------CCCCcccccceecc
Q 046314 821 HLVSLHASLLSGLSSLNWLNLNNCALTA-IPEEIGC-LPSLEWLELR----GNNFESLP-------SIPELPPSLKWLQA 887 (1137)
Q Consensus 821 ~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~-l~~L~~L~Ls----~n~l~~lp-------~~~~l~~~L~~L~l 887 (1137)
..++++|++|+++.|.+++ .+..+.. +++|+.|+|+ .|.++..| .+..++ +|+.|++
T Consensus 374 ---------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~-~L~~L~L 443 (592)
T 3ogk_B 374 ---------AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK-KLRRFAF 443 (592)
T ss_dssp ---------HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT-TCCEEEE
T ss_pred ---------HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC-CCCEEEE
Confidence 2246788888887777775 3344443 7788888886 45666544 123344 7888888
Q ss_pred ccccc-c-----ccCCCCCCCcceeeccccc
Q 046314 888 SNCKR-L-----QFLPEIPSRPEELDASLLQ 912 (1137)
Q Consensus 888 ~~c~~-L-----~~lp~lp~~L~~L~~~~c~ 912 (1137)
++|.. + ..++...++|+.|++.+|.
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 76653 1 1222334678888877664
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.68 E-value=7.3e-16 Score=176.57 Aligned_cols=293 Identities=14% Similarity=0.103 Sum_probs=176.3
Q ss_pred cCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchh--ccCcChH
Q 046314 179 ISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEI--ENGVGLV 256 (1137)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~--s~~~~~~ 256 (1137)
.++..++.||||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+. ..... .......
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHH
Confidence 45556788999999999999998643 6899999999999999999998752 45554 22200 0011344
Q ss_pred HHHHHHHHHHhCc--------------cccC--CCCC---ccHHHHHhhcC-CceEEEEeCCCCHH--------H-HHHH
Q 046314 257 HLHKQVVSLLLGE--------------RIEM--GGPN---IPAYTLERLRR-TKVFFVLDDVSKFE--------Q-LKYF 307 (1137)
Q Consensus 257 ~l~~~ll~~l~~~--------------~~~~--~~~~---~~~~l~~~L~~-kr~LlVLDdv~~~~--------~-l~~l 307 (1137)
.+...+...+... .... .... ..+.+.+.... ++++|||||++... + +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 4444444433210 0000 0111 12223333322 48999999997632 2 3333
Q ss_pred hcccCCCCCCCEEEEEeCChhhHHhh----C----C--CCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 046314 308 VGWLHGFCPGSRIVVTTRDKQVLRKH----G----V--NDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAV 377 (1137)
Q Consensus 308 ~~~~~~~~~gsrIIiTTR~~~v~~~~----~----~--~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv 377 (1137)
..... ..++.++|+|++...+.... . . .....+++.+|+.+|+.+++...........+ .+.+.+++
T Consensus 156 ~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAV 232 (350)
T ss_dssp HHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHH
T ss_pred HHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Confidence 22111 12578899999886543221 1 1 11137999999999999999875322111111 45678899
Q ss_pred HHhCCCchhHHHHhhhhcc-CCHHHHHHHHHHHhccCCcccHHHHHHHhhccC---ChhhHhHhhhcccccCCcCHHHHH
Q 046314 378 RYAEGNPLALEVLGSSLHQ-KSKLDWENVLDNLKQISGVSRIYNVLRISYEEL---SFEEKSTFLDIACFFKGECKDRVL 453 (1137)
Q Consensus 378 ~~~~G~PLal~~lg~~L~~-~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~l~ 453 (1137)
+.++|+|+++..++..+.. .+...+. ..+. +.+...+.-.+..+ ++.++.++..+|+ .......+.
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~ 302 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL-----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIR 302 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH-----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHH---HHHH-----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHH
Confidence 9999999999999876532 2322221 1111 11111122222233 7889999999998 334555565
Q ss_pred HHHhhc--CC---chhHHHHHHHhccCceeeCCeEEe-hHHHHHHHH
Q 046314 454 MLLHDR--QY---NVTHVLSILIDKSLITEHNNRLHM-HELLQEMGQ 494 (1137)
Q Consensus 454 ~~~~~~--~~---~~~~~l~~L~~~sLi~~~~~~~~m-Hdll~~~~~ 494 (1137)
..+... +. ....+++.|.+.+||...++.|.+ |++++++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 554221 22 346789999999999887777765 788887654
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=1.9e-17 Score=188.79 Aligned_cols=226 Identities=14% Similarity=0.170 Sum_probs=126.8
Q ss_pred ceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccc-cCccccCCCcCceEeccCCcCcccCCCCC-CCCCCceEecc
Q 046314 639 KLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAW-VPSSIQNFNHLSLLCFQGCKNLRSFPSNL-HFVSPVNIDCS 716 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~-~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ls 716 (1137)
+|+.|++++|.+....+.+..+++|++|+|++|..... ++..+..+++|+.|+|++|......|..+ .+++|+.|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 67777777777666666666677777777777764433 56666777777777777765332333222 13444444444
Q ss_pred CCccCCCCCcccCCCcEEEecCCCcc--ccCccccCCCCCcEEecccc-ccccc-ccccccCCC-CCcEecccccc--cc
Q 046314 717 FCVNLTEFPRISGNITKLNLCDTAIE--EVPSSVECLTNLEYLYINRC-KRLKR-VSTSICKLK-SLIWLCLNECL--NL 789 (1137)
Q Consensus 717 ~c~~l~~~~~~~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~-~~l~~-lp~~l~~l~-~L~~L~L~~~~--~~ 789 (1137)
+|. .+. .+|..+..+++|++|++++| .+... ++..+..++ +|++|++++|. ..
T Consensus 151 ~~~--------------------~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 151 GCS--------------------GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp TCB--------------------SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred CCC--------------------CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 432 233 24444555666666666666 44332 455555666 66666666663 22
Q ss_pred -cccccccCCCCCcceecccCcc-cc-ccCchhhccccccccccCCCCCCCEEeecCCC-CCC-cccccCCCCCCCEEEc
Q 046314 790 -EKSWSELGNLKSFQYIGAHGST-IS-QLPHLLSHLVSLHASLLSGLSSLNWLNLNNCA-LTA-IPEEIGCLPSLEWLEL 864 (1137)
Q Consensus 790 -~~~~~~l~~l~~L~~L~l~~n~-i~-~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~-l~~-lp~~l~~l~~L~~L~L 864 (1137)
..++..+..+++|+.|++++|. ++ ..+.. +..+++|++|+|++|. +.. ....+..+++|+.|+|
T Consensus 211 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----------l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-----------FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-----------GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-----------HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 3344555566666666666665 33 22221 3345677777777774 222 1224666777777777
Q ss_pred cCCCCCcCCCCCCcccccceeccccccccccCC
Q 046314 865 RGNNFESLPSIPELPPSLKWLQASNCKRLQFLP 897 (1137)
Q Consensus 865 s~n~l~~lp~~~~l~~~L~~L~l~~c~~L~~lp 897 (1137)
++| ++. ..+..+..+|..|++++|..-...|
T Consensus 280 ~~~-i~~-~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 280 FGI-VPD-GTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp TTS-SCT-TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred cCc-cCH-HHHHHHHhhCcceEEecccCccccC
Confidence 777 221 1333443346677776554333333
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=1.4e-17 Score=193.66 Aligned_cols=263 Identities=13% Similarity=0.054 Sum_probs=159.2
Q ss_pred CceEEEEecCCCCCCCCCC-cccccceeecccCCchhhhhhh---hhccccceeEEecCCCCCC---CccCC--------
Q 046314 592 KLKYLHLHKYPLRTLPENF-KPKNLIELNLPFSKIVQIWEEK---RYVKAFKLKSINLSHSQYL---IRIPD-------- 656 (1137)
Q Consensus 592 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~---~~~~l~~L~~L~Ls~n~~~---~~~p~-------- 656 (1137)
.|++..+....+..++..+ .+++|++|+|++|.+....... ....+++|++|+|++|.+. ..+|.
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444444444444555555 5677888888888776542211 1223447888888776432 22231
Q ss_pred CCCCCcccEeeccCCCCcc----ccCccccCCCcCceEeccCCcCcccCCCCCC--CCCCceEeccCCccCCCCCcccCC
Q 046314 657 PSETPSLERINLWNCTNLA----WVPSSIQNFNHLSLLCFQGCKNLRSFPSNLH--FVSPVNIDCSFCVNLTEFPRISGN 730 (1137)
Q Consensus 657 ~~~l~~L~~L~L~~~~~l~----~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~ls~c~~l~~~~~~~~~ 730 (1137)
+..+++|++|+|++|.... .+|..+..+++|++|+|++|..-...+..+. +..+....+. ....+
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~---------~~~~~ 160 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA---------KNAPP 160 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHH---------HTCCC
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhc---------ccCCC
Confidence 2566777777777776555 3566667777777777777653211110000 0000000000 00046
Q ss_pred CcEEEecCCCcc--ccC---ccccCCCCCcEEecccccccc-----cccccccCCCCCcEecccccccc----ccccccc
Q 046314 731 ITKLNLCDTAIE--EVP---SSVECLTNLEYLYINRCKRLK-----RVSTSICKLKSLIWLCLNECLNL----EKSWSEL 796 (1137)
Q Consensus 731 L~~L~L~~~~i~--~lp---~~i~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~L~~~~~~----~~~~~~l 796 (1137)
|++|++++|.+. .+| ..+..+++|++|+|++|.+.. ..|..+..+++|+.|+|++|... ..+|..+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 677777777765 344 356677888888888887652 34446777888888888888764 5567777
Q ss_pred CCCCCcceecccCcccccc-----CchhhccccccccccCCCCCCCEEeecCCCCCC-----ccccc-CCCCCCCEEEcc
Q 046314 797 GNLKSFQYIGAHGSTISQL-----PHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA-----IPEEI-GCLPSLEWLELR 865 (1137)
Q Consensus 797 ~~l~~L~~L~l~~n~i~~l-----p~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~Ls 865 (1137)
..+++|+.|++++|.++.. |..+ ....+++|++|+|++|.++. +|..+ .++++|+.|+|+
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l---------~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAF---------SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHH---------HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHH---------hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 7888888888888877643 2221 11336788888888888886 77776 567888888888
Q ss_pred CCCCCcC
Q 046314 866 GNNFESL 872 (1137)
Q Consensus 866 ~n~l~~l 872 (1137)
+|.++..
T Consensus 312 ~N~l~~~ 318 (386)
T 2ca6_A 312 GNRFSEE 318 (386)
T ss_dssp TSBSCTT
T ss_pred CCcCCcc
Confidence 8877753
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=6.7e-18 Score=192.47 Aligned_cols=226 Identities=16% Similarity=0.210 Sum_probs=110.9
Q ss_pred CceEEEEecCCCCCCCCCC-cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeecc
Q 046314 592 KLKYLHLHKYPLRTLPENF-KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLW 669 (1137)
Q Consensus 592 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~ 669 (1137)
+++.|++++|.+...+..+ .+.+|++|+|++|.+...........+++|++|+|++|.+....+. ++.+++|++|+|+
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 5666666666655443333 5566666666666554321111122233566666665554333332 3445555555555
Q ss_pred CCCCcc--ccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccc--cC
Q 046314 670 NCTNLA--WVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEE--VP 745 (1137)
Q Consensus 670 ~~~~l~--~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~--lp 745 (1137)
+|.... .++..+.++++|++|++++|. .+.. ++
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-------------------------------------------~l~~~~~~ 187 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCF-------------------------------------------DFTEKHVQ 187 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCT-------------------------------------------TCCHHHHH
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCC-------------------------------------------CcChHHHH
Confidence 553222 133334445555555554442 2221 33
Q ss_pred ccccCCC-CCcEEeccccc--cc-ccccccccCCCCCcEecccccc-cccccccccCCCCCcceecccCccccccCchhh
Q 046314 746 SSVECLT-NLEYLYINRCK--RL-KRVSTSICKLKSLIWLCLNECL-NLEKSWSELGNLKSFQYIGAHGSTISQLPHLLS 820 (1137)
Q Consensus 746 ~~i~~l~-~L~~L~L~~~~--~l-~~lp~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~ 820 (1137)
..+..++ +|++|++++|. +. ..+|..+.++++|++|++++|. .....+..+..+++|+.|++++|. ...+..+.
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~ 266 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLL 266 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHH
Confidence 3344555 56666666552 22 3344445555666666666665 333444555566666666666654 11111111
Q ss_pred ccccccccccCCCCCCCEEeecCCCCCCcccccCCC-CCCCEEEccCCCCCcC
Q 046314 821 HLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCL-PSLEWLELRGNNFESL 872 (1137)
Q Consensus 821 ~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l-~~L~~L~Ls~n~l~~l 872 (1137)
.+..+++|+.|+|++| +++- .+..+ .+|..|++++|+++..
T Consensus 267 --------~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 267 --------ELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp --------GGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCT
T ss_pred --------HHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecccCccc
Confidence 1344677777777777 3320 11112 2355555777777754
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.4e-15 Score=165.40 Aligned_cols=152 Identities=22% Similarity=0.276 Sum_probs=121.1
Q ss_pred CCCcEEEecCCCccccCc-cccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecc
Q 046314 729 GNITKLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGA 807 (1137)
Q Consensus 729 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 807 (1137)
.+++.|+|++|.+..++. .+..+++|++|+|++|.+.+..+..+.++++|++|+|++|......+..+..+++|+.|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 467778888888887765 4788888888888888887777777888888888888888877666677788888888888
Q ss_pred cCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCCCCCcCC--CCCCcccccce
Q 046314 808 HGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGNNFESLP--SIPELPPSLKW 884 (1137)
Q Consensus 808 ~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~ 884 (1137)
++|.++.+|... +.++++|++|+|++|.++.+|. .+..+++|+.|+|++|+++.+| .+..++ +|+.
T Consensus 115 ~~N~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~ 183 (251)
T 3m19_A 115 GGNQLKSLPSGV----------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG-KLQT 183 (251)
T ss_dssp CSSCCCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCE
T ss_pred CCCcCCCcChhH----------hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC-CCCE
Confidence 888888777632 5567888888888888888766 5788888888888888888877 466666 8888
Q ss_pred ecccccc
Q 046314 885 LQASNCK 891 (1137)
Q Consensus 885 L~l~~c~ 891 (1137)
|++++|+
T Consensus 184 L~l~~N~ 190 (251)
T 3m19_A 184 ITLFGNQ 190 (251)
T ss_dssp EECCSCC
T ss_pred EEeeCCc
Confidence 8888765
No 103
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=2.4e-15 Score=172.68 Aligned_cols=294 Identities=15% Similarity=0.114 Sum_probs=173.4
Q ss_pred cCCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchh-ccCcChHH
Q 046314 179 ISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEI-ENGVGLVH 257 (1137)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~-s~~~~~~~ 257 (1137)
.+...++.||||+.++++|.+ +.. +++.|+|++|+|||||+++++++.... .+|+. ..... ........
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHH
Confidence 345567889999999999999 753 599999999999999999999887532 45554 22200 00112233
Q ss_pred HHHHHHHHHh-------------Cc--cc-------cCC----CCCccHHHHHhhcC---CceEEEEeCCCCHH-----H
Q 046314 258 LHKQVVSLLL-------------GE--RI-------EMG----GPNIPAYTLERLRR---TKVFFVLDDVSKFE-----Q 303 (1137)
Q Consensus 258 l~~~ll~~l~-------------~~--~~-------~~~----~~~~~~~l~~~L~~---kr~LlVLDdv~~~~-----~ 303 (1137)
....+...+. .. .. ... .......+.+.+.. ++++|||||++... +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 3333322221 00 00 000 11223333333332 48999999997632 1
Q ss_pred HHHHhcccCCCCCCCEEEEEeCChhhHHhh----C----CC-C-ccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHH
Q 046314 304 LKYFVGWLHGFCPGSRIVVTTRDKQVLRKH----G----VN-D-EYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALS 373 (1137)
Q Consensus 304 l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~----~----~~-~-~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~ 373 (1137)
+..++..+....++.++|+|+|........ . .. . ...+++.+|+.+|+.+++...+.......+..
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~---- 232 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY---- 232 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----
Confidence 211211111112477899999987643221 1 11 1 13799999999999999987542111112211
Q ss_pred HHHHHHhCCCchhHHHHhhhhcc-CCHHHHHHHHHHHhccCCcccHHHHHH-Hhh--ccCChhhHhHhhhcccccCCcCH
Q 046314 374 KKAVRYAEGNPLALEVLGSSLHQ-KSKLDWENVLDNLKQISGVSRIYNVLR-ISY--EELSFEEKSTFLDIACFFKGECK 449 (1137)
Q Consensus 374 ~~iv~~~~G~PLal~~lg~~L~~-~~~~~w~~~l~~l~~~~~~~~i~~~l~-~sy--~~L~~~~k~~fl~~a~f~~~~~~ 449 (1137)
.++++.++|+|+++..++..+.. .+...|.. .+..... ..+...+. ..+ ..|++.++.++..+|+ . . ..
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAK-KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHHH-HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CH
Confidence 78899999999999999887642 23333321 1110000 11111222 111 1688999999999998 3 3 55
Q ss_pred HHHHHHHh-hcC-----CchhHHHHHHHhccCceeeCCeEE-ehHHHHHHH
Q 046314 450 DRVLMLLH-DRQ-----YNVTHVLSILIDKSLITEHNNRLH-MHELLQEMG 493 (1137)
Q Consensus 450 ~~l~~~~~-~~~-----~~~~~~l~~L~~~sLi~~~~~~~~-mHdll~~~~ 493 (1137)
..+...+. ..| .....+++.|.+.+||...++.|. .|++++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 55554332 123 235678999999999988777777 488888764
No 104
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=5.2e-18 Score=209.43 Aligned_cols=369 Identities=13% Similarity=0.084 Sum_probs=200.6
Q ss_pred cccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCC------------CCCCCCceEEEEecCCCCCC-CCCC--cc
Q 046314 548 RAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGL------------DYLPEKLKYLHLHKYPLRTL-PENF--KP 612 (1137)
Q Consensus 548 ~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l------------~~l~~~L~~L~l~~~~l~~l-p~~~--~l 612 (1137)
..+.++++|+.|+++++.... .....|..+ ... ++|++|++++|.+... +..+ .+
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~---------~~~l~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~ 129 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFA---------DFNLVPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDCLELIAKSF 129 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGG---------GGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHC
T ss_pred HHHhhCCCceEEeccCCCchh---------hcccccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHHHHHHHHhC
Confidence 346677889999998764210 000011111 123 4799999999876522 1222 57
Q ss_pred cccceeecccC-CchhhhhhhhhccccceeEEecCCCCCCCc----cCCC-CCCCcccEeeccCCCC-c--cccCccccC
Q 046314 613 KNLIELNLPFS-KIVQIWEEKRYVKAFKLKSINLSHSQYLIR----IPDP-SETPSLERINLWNCTN-L--AWVPSSIQN 683 (1137)
Q Consensus 613 ~~L~~L~L~~n-~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~----~p~~-~~l~~L~~L~L~~~~~-l--~~~p~~i~~ 683 (1137)
++|++|+|++| .+...........+++|++|+|++|.+... ++.+ ..+++|++|++++|.. . ..++..+.+
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 89999999988 554421111122455999999999875432 2232 4778999999998851 1 112222345
Q ss_pred CCcCceEeccCCcCcccCCCCCC-CCCCceEeccCCc-------------------cCCC-----------CCc---ccC
Q 046314 684 FNHLSLLCFQGCKNLRSFPSNLH-FVSPVNIDCSFCV-------------------NLTE-----------FPR---ISG 729 (1137)
Q Consensus 684 L~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~ls~c~-------------------~l~~-----------~~~---~~~ 729 (1137)
+++|+.|++++|..+..+|..+. +++|+.|+++.|. +++. ++. ...
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 78999999999866666555443 6778888765543 1111 111 123
Q ss_pred CCcEEEecCCCccc--cCccccCCCCCcEEecccccccccccccccCCCCCcEeccccc--------ccc-ccccccc-C
Q 046314 730 NITKLNLCDTAIEE--VPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNEC--------LNL-EKSWSEL-G 797 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~--------~~~-~~~~~~l-~ 797 (1137)
+|++|++++|.+.. ++..+..+++|+.|++++|.....++.....+++|++|++++| ... ......+ .
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 55555655555432 2222345555666665555111112222223555555555321 111 1111111 1
Q ss_pred CCCCcceecccCccccccCchhhcccccccccc-CCCCCCCEEeec--C----CCCCCcc------cccCCCCCCCEEEc
Q 046314 798 NLKSFQYIGAHGSTISQLPHLLSHLVSLHASLL-SGLSSLNWLNLN--N----CALTAIP------EEIGCLPSLEWLEL 864 (1137)
Q Consensus 798 ~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l-~~l~~L~~L~Ls--~----n~l~~lp------~~l~~l~~L~~L~L 864 (1137)
.+++|+.|.+..+.++.... . .+ ..+++|+.|+|+ + +.+++.| ..+..+++|+.|+|
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~--~--------~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAAL--I--------TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHH--H--------HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred hchhHHHHHHhcCCcCHHHH--H--------HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 24555555554444432110 0 01 247899999999 3 4666433 23667889999999
Q ss_pred cCCCCCcCC--CCCCcccccceecccccccccc-CC---CCCCCcceeeccccccccccccCCccccccccccceEE-ee
Q 046314 865 RGNNFESLP--SIPELPPSLKWLQASNCKRLQF-LP---EIPSRPEELDASLLQKLSKYSYDDEVEDVNVSSSIKFL-FV 937 (1137)
Q Consensus 865 s~n~l~~lp--~~~~l~~~L~~L~l~~c~~L~~-lp---~lp~~L~~L~~~~c~~L~~~~~~~~~~~~~~~~~l~~~-~~ 937 (1137)
++ +++... .+....++|+.|++++|..-.. ++ .-.++|+.|++++|+- .......... ....++.+ +.
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~---~l~~L~~L~l~ 514 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANAS---KLETMRSLWMS 514 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGG---GGGGSSEEEEE
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHH---hCCCCCEEeee
Confidence 87 554322 3333223899999998863111 11 2257899999999975 2221110000 11234555 88
Q ss_pred cCcc
Q 046314 938 DCIK 941 (1137)
Q Consensus 938 ~C~~ 941 (1137)
+|+.
T Consensus 515 ~~~~ 518 (594)
T 2p1m_B 515 SCSV 518 (594)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8876
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=2.8e-15 Score=162.97 Aligned_cols=115 Identities=19% Similarity=0.195 Sum_probs=79.9
Q ss_pred ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccc
Q 046314 748 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHA 827 (1137)
Q Consensus 748 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~ 827 (1137)
+..+++|++|+|++|.+.+..+..+..+++|++|+|++|......+..+..+++|+.|++++|.++.+|..
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------- 149 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG--------- 149 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH---------
Confidence 44555555555555555544445556666666666666655544444566777777777777777776652
Q ss_pred cccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCCCCCcC
Q 046314 828 SLLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGNNFESL 872 (1137)
Q Consensus 828 ~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l 872 (1137)
.+.++++|++|+|++|.++.+|. .+..+++|+.|+|++|.+...
T Consensus 150 -~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 150 -AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 25567889999999999988665 688899999999999988764
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=3.6e-15 Score=170.67 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=112.8
Q ss_pred ecCCCccccC-ccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccccccc-ccCCCC-CcceecccCccc
Q 046314 736 LCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWS-ELGNLK-SFQYIGAHGSTI 812 (1137)
Q Consensus 736 L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-~l~~l~-~L~~L~l~~n~i 812 (1137)
+.+|.+..+| ..+..+++|++|++++|.+....+..+....++..|++.++..+..++. .+..+. .|+.|++++|.|
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 3345566664 3467788888888888877666666666677777888877655555543 455554 588889999988
Q ss_pred cccCchhhccccccccccCCCCCCCEEeecC-CCCCCccc-ccCCCCCCCEEEccCCCCCcCCCCCCcccccceeccccc
Q 046314 813 SQLPHLLSHLVSLHASLLSGLSSLNWLNLNN-CALTAIPE-EIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASNC 890 (1137)
Q Consensus 813 ~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~c 890 (1137)
+.+|.... ...+|+.|++++ |.++.+|. .+..+++|+.|+|++|+|+.+|. ..+. +|+.|.+.+|
T Consensus 167 ~~i~~~~f-----------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~-~L~~L~~l~~ 233 (350)
T 4ay9_X 167 QEIHNSAF-----------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLE-NLKKLRARST 233 (350)
T ss_dssp CEECTTSS-----------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCT-TCCEEECTTC
T ss_pred cCCChhhc-----------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhc-cchHhhhccC
Confidence 88876432 235688888875 57777876 46889999999999999998883 1233 6777777778
Q ss_pred cccccCCCCC--CCcceeecc
Q 046314 891 KRLQFLPEIP--SRPEELDAS 909 (1137)
Q Consensus 891 ~~L~~lp~lp--~~L~~L~~~ 909 (1137)
..++.+|.+. ++|+.+++.
T Consensus 234 ~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 234 YNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TTCCCCCCTTTCCSCCEEECS
T ss_pred CCcCcCCCchhCcChhhCcCC
Confidence 8888888643 466666654
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=4.6e-17 Score=187.41 Aligned_cols=254 Identities=15% Similarity=0.142 Sum_probs=148.0
Q ss_pred EEEEecCCCCCCCCCC--cccccceeecccCCchhhhhh---hhhcccc-ceeEEecCCCCCCCccCC-CCCC-----Cc
Q 046314 595 YLHLHKYPLRTLPENF--KPKNLIELNLPFSKIVQIWEE---KRYVKAF-KLKSINLSHSQYLIRIPD-PSET-----PS 662 (1137)
Q Consensus 595 ~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~~---~~~~~l~-~L~~L~Ls~n~~~~~~p~-~~~l-----~~ 662 (1137)
+++++.|.+....+.+ .+.+|++|+|++|.+...... ..+..++ +|++|+|++|.+....+. +..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3556666666443333 344577777777777665421 1122344 677777777765544332 2222 67
Q ss_pred ccEeeccCCCCccccCccc----cCC-CcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCC-CCcccCCCcEEEe
Q 046314 663 LERINLWNCTNLAWVPSSI----QNF-NHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTE-FPRISGNITKLNL 736 (1137)
Q Consensus 663 L~~L~L~~~~~l~~~p~~i----~~L-~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~-~~~~~~~L~~L~L 736 (1137)
|++|+|++|......+..+ ..+ ++|+.|+|++|.. ...+... +.. +.....+|++|+|
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~---------------l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSE---------------FKQAFSNLPASITSLNL 145 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHH---------------HHHHHTTSCTTCCEEEC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHH---------------HHHHHHhCCCceeEEEc
Confidence 7777777776544433332 233 5666666666542 2211100 000 0000236667777
Q ss_pred cCCCcc-----ccCccccCCC-CCcEEecccccccccccccc----cCC-CCCcEecccccccccc----cccccCC-CC
Q 046314 737 CDTAIE-----EVPSSVECLT-NLEYLYINRCKRLKRVSTSI----CKL-KSLIWLCLNECLNLEK----SWSELGN-LK 800 (1137)
Q Consensus 737 ~~~~i~-----~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~l----~~l-~~L~~L~L~~~~~~~~----~~~~l~~-l~ 800 (1137)
++|.+. .++..+..++ +|++|+|++|.+....+..+ ..+ ++|++|+|++|..... ++..+.. .+
T Consensus 146 s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~ 225 (362)
T 3goz_A 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT
T ss_pred cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC
Confidence 777766 4455555555 78888888887766555433 334 5888888888875542 4444544 35
Q ss_pred CcceecccCccccccCc-hhhccccccccccCCCCCCCEEeecCCCCCC--------cccccCCCCCCCEEEccCCCCCc
Q 046314 801 SFQYIGAHGSTISQLPH-LLSHLVSLHASLLSGLSSLNWLNLNNCALTA--------IPEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 801 ~L~~L~l~~n~i~~lp~-~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~--------lp~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
+|+.|++++|.+...+. .+.. .+..+++|+.|+|++|.+.. ++..+..+++|+.|+|++|.+..
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~-------~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKL-------LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHH-------TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CceEEECcCCCCCcHHHHHHHH-------HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 78888888888776543 1111 24567778888888887433 34456777888888888887764
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=6.1e-18 Score=208.85 Aligned_cols=198 Identities=14% Similarity=0.065 Sum_probs=122.6
Q ss_pred CCCCceEeccCCccCCC--C---CcccCCCcEEEecCCCcc--ccCccccCCCCCcEEecccc---------cccccccc
Q 046314 707 FVSPVNIDCSFCVNLTE--F---PRISGNITKLNLCDTAIE--EVPSSVECLTNLEYLYINRC---------KRLKRVST 770 (1137)
Q Consensus 707 l~~L~~L~ls~c~~l~~--~---~~~~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~---------~~l~~lp~ 770 (1137)
+++|+.|++++|. +.. + .....+|++|++++| +. .++.....+++|+.|++.+| .+......
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 6789999999987 442 1 124568999999988 43 22322345889999999442 22222112
Q ss_pred cc-cCCCCCcEecccccccccccccccC-CCCCcceeccc--C----ccccccCchhhccccccccccCCCCCCCEEeec
Q 046314 771 SI-CKLKSLIWLCLNECLNLEKSWSELG-NLKSFQYIGAH--G----STISQLPHLLSHLVSLHASLLSGLSSLNWLNLN 842 (1137)
Q Consensus 771 ~l-~~l~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~l~--~----n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls 842 (1137)
.+ .++++|++|.+.+|......+..+. .+++|+.|+++ + +.++..|..- .+.. .+.++++|+.|+|+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~~~----l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI-GFGA----IVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH-HHHH----HHHHCTTCCEEECC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh-HHHH----HHhhCCCccEEeec
Confidence 22 3478999997776666554444444 58899999998 4 4555443210 0000 13456788888887
Q ss_pred CCCCCC-cccccCC-CCCCCEEEccCCCCCcCC--CC-CCcccccceecccccccccc----CCCCCCCcceeecccccc
Q 046314 843 NCALTA-IPEEIGC-LPSLEWLELRGNNFESLP--SI-PELPPSLKWLQASNCKRLQF----LPEIPSRPEELDASLLQK 913 (1137)
Q Consensus 843 ~n~l~~-lp~~l~~-l~~L~~L~Ls~n~l~~lp--~~-~~l~~~L~~L~l~~c~~L~~----lp~lp~~L~~L~~~~c~~ 913 (1137)
+ .+++ .+..+.. +++|+.|+|++|.++... .+ ..++ +|+.|+|++|+.-.. +..-.++|+.|++++|+.
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD-SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT-TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC-CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 7 5554 3333433 788888888888875322 22 3345 888888888875111 112236888888888865
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=2.8e-17 Score=191.12 Aligned_cols=243 Identities=17% Similarity=0.113 Sum_probs=174.2
Q ss_pred eecCCCCCCCCCCceEEEEecCCCCC-----CCCCC-cccccceeecccCCchhh----hhhhh-----hccccceeEEe
Q 046314 580 VQFPDGLDYLPEKLKYLHLHKYPLRT-----LPENF-KPKNLIELNLPFSKIVQI----WEEKR-----YVKAFKLKSIN 644 (1137)
Q Consensus 580 ~~lp~~l~~l~~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~i~~l----~~~~~-----~~~l~~L~~L~ 644 (1137)
..++..+...+ +|++|++++|.+.. ++..+ .+++|++|+|++|.+..+ +.+.. ...+++|++|+
T Consensus 22 ~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 22 KSVFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HTTSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34445555554 79999999998874 33334 688999999999866533 22221 13456999999
Q ss_pred cCCCCCCC----ccCC-CCCCCcccEeeccCCCCcccc----CccccCC---------CcCceEeccCCcCc-ccCCCCC
Q 046314 645 LSHSQYLI----RIPD-PSETPSLERINLWNCTNLAWV----PSSIQNF---------NHLSLLCFQGCKNL-RSFPSNL 705 (1137)
Q Consensus 645 Ls~n~~~~----~~p~-~~~l~~L~~L~L~~~~~l~~~----p~~i~~L---------~~L~~L~L~~c~~l-~~lp~~~ 705 (1137)
|++|.+.. .+|. +..+++|++|+|++|...... +..+..+ ++|++|+|++|..- ..+|...
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99999876 2443 678999999999999765333 3334444 88999999887532 1222100
Q ss_pred CCCCCceEeccCCccCCCCCcccCCCcEEEecCCCcc------ccCccccCCCCCcEEeccccccc----ccccccccCC
Q 046314 706 HFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIE------EVPSSVECLTNLEYLYINRCKRL----KRVSTSICKL 775 (1137)
Q Consensus 706 ~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~------~lp~~i~~l~~L~~L~L~~~~~l----~~lp~~l~~l 775 (1137)
..-....+|++|++++|.+. -+|..+..+++|+.|+|++|.+. ..+|..+..+
T Consensus 181 -----------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 181 -----------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp -----------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred -----------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 00001236777777778777 24447889999999999999875 6778888999
Q ss_pred CCCcEecccccccccc----ccccc--CCCCCcceecccCccccc-----cCchhhccccccccccCCCCCCCEEeecCC
Q 046314 776 KSLIWLCLNECLNLEK----SWSEL--GNLKSFQYIGAHGSTISQ-----LPHLLSHLVSLHASLLSGLSSLNWLNLNNC 844 (1137)
Q Consensus 776 ~~L~~L~L~~~~~~~~----~~~~l--~~l~~L~~L~l~~n~i~~-----lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n 844 (1137)
++|++|+|++|..... ++..+ +.+++|+.|++++|.++. +|..+ ..++++|++|+|++|
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l----------~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI----------DEKMPDLLFLELNGN 313 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH----------HHHCTTCCEEECTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH----------HhcCCCceEEEccCC
Confidence 9999999999987654 45666 448999999999999986 66544 134789999999999
Q ss_pred CCCCcc
Q 046314 845 ALTAIP 850 (1137)
Q Consensus 845 ~l~~lp 850 (1137)
.++...
T Consensus 314 ~l~~~~ 319 (386)
T 2ca6_A 314 RFSEED 319 (386)
T ss_dssp BSCTTS
T ss_pred cCCcch
Confidence 998744
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=1.4e-15 Score=169.07 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=40.9
Q ss_pred cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceE
Q 046314 611 KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLL 690 (1137)
Q Consensus 611 ~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L 690 (1137)
.+.++..+.+..+.+...... .. +++|+.|++++|.+. .++.+..+++|++|+|++|.... ++. +..+++|+.|
T Consensus 22 ~l~~~~~~~l~~~~~~~~~~~-~~--l~~L~~L~l~~~~i~-~~~~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L 95 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAVTQ-NE--LNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWL 95 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEECH-HH--HHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCcccccch-hh--cCcccEEEccCCCcc-cChhHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEE
Confidence 344555556666655544221 12 336777777777543 33555566666666666664333 222 5555555555
Q ss_pred eccC
Q 046314 691 CFQG 694 (1137)
Q Consensus 691 ~L~~ 694 (1137)
++++
T Consensus 96 ~l~~ 99 (291)
T 1h6t_A 96 FLDE 99 (291)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 5544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=1.3e-15 Score=185.62 Aligned_cols=195 Identities=18% Similarity=0.217 Sum_probs=113.9
Q ss_pred cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceE
Q 046314 611 KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLL 690 (1137)
Q Consensus 611 ~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L 690 (1137)
.+.++..+++..+.+..+... . .+++|+.|++++|.+ ..+|.+..+++|+.|+|++|..... ++ +..+++|+.|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~~-~--~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L 92 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVTQ-N--ELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEECH-H--HHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEE
T ss_pred HHHHHHHHhccCCCcccccch-h--cCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEE
Confidence 455566666666666654321 2 233777777777764 3445666777777777777654333 32 6666666666
Q ss_pred eccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccc
Q 046314 691 CFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVST 770 (1137)
Q Consensus 691 ~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 770 (1137)
+|++|. +..+| .+..+++|+.|+|++|.+... .
T Consensus 93 ~Ls~N~--------------------------------------------l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~ 125 (605)
T 1m9s_A 93 FLDENK--------------------------------------------IKDLS-SLKDLKKLKSLSLEHNGISDI--N 125 (605)
T ss_dssp ECCSSC--------------------------------------------CCCCT-TSTTCTTCCEEECTTSCCCCC--G
T ss_pred ECcCCC--------------------------------------------CCCCh-hhccCCCCCEEEecCCCCCCC--c
Confidence 666643 22222 244444555555555544331 2
Q ss_pred cccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc
Q 046314 771 SICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP 850 (1137)
Q Consensus 771 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp 850 (1137)
.+..+++|+.|+|++|..... ..+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.++++|
T Consensus 126 ~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~------------l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 126 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP------------LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG------------GTTCTTCCEEECCSSCCCBCG
T ss_pred cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh------------hccCCCCCEEECcCCCCCCCh
Confidence 344555555555555543332 345566666666666666665543 345677777777777777764
Q ss_pred cccCCCCCCCEEEccCCCCCcCC
Q 046314 851 EEIGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 851 ~~l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
.+..+++|+.|+|++|.+...|
T Consensus 192 -~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GGTTCTTCSEEECCSEEEECCC
T ss_pred -HHccCCCCCEEEccCCcCcCCc
Confidence 4777777888888877777665
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.1e-14 Score=175.43 Aligned_cols=185 Identities=16% Similarity=0.196 Sum_probs=132.7
Q ss_pred cceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEecc
Q 046314 638 FKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCS 716 (1137)
Q Consensus 638 ~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls 716 (1137)
.+|+.|+|++|.+.. +|. + +++|++|+|++|... .+| ..+++|+.|+|++|. +..+|.
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~-l~~ip~------------- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNR-LSTLPE------------- 117 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCC-------------
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCC-CCCcch-------------
Confidence 389999999988655 554 4 378888888888544 666 456778888887763 333443
Q ss_pred CCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEeccccccccccccccc
Q 046314 717 FCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSEL 796 (1137)
Q Consensus 717 ~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l 796 (1137)
...+|+.|+|++|.+..+|. .+++|+.|+|++|.+.+ +|. .+++|++|+|++|.... +|. +
T Consensus 118 ----------l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 118 ----------LPASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp ----------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C
T ss_pred ----------hhcCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h
Confidence 12267777777788877777 57888888888887665 555 56788888888887554 666 5
Q ss_pred CCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCc
Q 046314 797 GNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 797 ~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
. ++|+.|++++|.|+.+|. +.. +| ....+.|+.|+|++|.++.+|..+..+++|+.|+|++|.++.
T Consensus 179 ~--~~L~~L~Ls~N~L~~lp~-~~~--~L----~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLESLPA-VPV--RN----HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C--TTCCEEECCSSCCSSCCC-CC--------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred h--CCCCEEECcCCCCCchhh-HHH--hh----hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 5 788888888888888876 321 11 122344589999999999999888889999999999998874
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=5.2e-15 Score=178.23 Aligned_cols=187 Identities=20% Similarity=0.248 Sum_probs=128.3
Q ss_pred CCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCCcccccceeecccCCchhhhhhhhh
Q 046314 555 SLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENFKPKNLIELNLPFSKIVQIWEEKRY 634 (1137)
Q Consensus 555 ~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~ 634 (1137)
+|+.|++++|. ...+|..+. ++|++|++++|.++.+| ..+++|++|+|++|+++.++. +
T Consensus 60 ~L~~L~Ls~n~-------------L~~lp~~l~---~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~---l 118 (571)
T 3cvr_A 60 QFSELQLNRLN-------------LSSLPDNLP---PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE---L 118 (571)
T ss_dssp TCSEEECCSSC-------------CSCCCSCCC---TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC---C
T ss_pred CccEEEeCCCC-------------CCccCHhHc---CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch---h
Confidence 78888887764 234666553 57999999999998888 456888899999988888765 2
Q ss_pred ccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEe
Q 046314 635 VKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNID 714 (1137)
Q Consensus 635 ~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ 714 (1137)
.. +|++|+|++|.+.. +|. .+++|+.|+|++|.... +|. .+++|+.|+|++|. +..+|. +. .+|+.|+
T Consensus 119 ~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-L~~lp~-l~-~~L~~L~ 186 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ-LTFLPE-LP-ESLEALD 186 (571)
T ss_dssp CT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CSCCCC-CC-TTCCEEE
T ss_pred hc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC-CCCcch-hh-CCCCEEE
Confidence 33 88888998888655 565 67888888888886543 665 57788888888865 445666 44 6666666
Q ss_pred ccCCccCCCCCcccCCC-------cEEEecCCCccccCccccCCCCCcEEecccccccccccccccCC
Q 046314 715 CSFCVNLTEFPRISGNI-------TKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKL 775 (1137)
Q Consensus 715 ls~c~~l~~~~~~~~~L-------~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l 775 (1137)
+++| .++.+|.+..+| +.|+|++|.|+.+|..+..+++|+.|+|++|++.+..|..+..+
T Consensus 187 Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 187 VSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCSS-CCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CcCC-CCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 6664 344555533355 66666666666666666666666666666666666665555443
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.1e-14 Score=161.96 Aligned_cols=141 Identities=25% Similarity=0.310 Sum_probs=92.7
Q ss_pred cEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCcc
Q 046314 732 TKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGST 811 (1137)
Q Consensus 732 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 811 (1137)
+.|++++|.+..++. +..+++|++|++++|.+.. +| .+..+++|++|++++|.... + ..+..+++|+.|++++|.
T Consensus 71 ~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 71 TKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNK 145 (291)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSC
T ss_pred CEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCc
Confidence 333344444444444 5566666666666665443 22 26666666666666665443 2 346667777777777777
Q ss_pred ccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCCCCCCcccccceecccccc
Q 046314 812 ISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 812 i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~c~ 891 (1137)
++.++. +..+++|+.|+|++|.+++++. +..+++|+.|+|++|.++.+|.+..++ +|+.|++++|+
T Consensus 146 l~~~~~------------l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~-~L~~L~l~~n~ 211 (291)
T 1h6t_A 146 ITDITV------------LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLK-NLDVLELFSQE 211 (291)
T ss_dssp CCCCGG------------GGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCT-TCSEEEEEEEE
T ss_pred CCcchh------------hccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhccCC-CCCEEECcCCc
Confidence 766532 4556778888888888887765 777888888888888888777777776 78888887765
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=1.8e-14 Score=154.13 Aligned_cols=148 Identities=22% Similarity=0.219 Sum_probs=114.4
Q ss_pred CcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCc
Q 046314 731 ITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGS 810 (1137)
Q Consensus 731 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n 810 (1137)
.+.++.+++.+..+|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|......+..+..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567777777888877654 77888888888877777777888888888888888765544456778888888888888
Q ss_pred cccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceeccc
Q 046314 811 TISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQAS 888 (1137)
Q Consensus 811 ~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~ 888 (1137)
.|+.+|... +.++++|++|+|++|.++.+|..+..+++|+.|+|++|+++.+| .+..++ +|+.|++.
T Consensus 99 ~l~~l~~~~----------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~ 167 (229)
T 3e6j_A 99 QLTVLPSAV----------FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS-SLTHAYLF 167 (229)
T ss_dssp CCCCCCTTT----------TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECT
T ss_pred cCCccChhH----------hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCC-CCCEEEee
Confidence 888776532 55678888888888888888888888888888888888888877 466666 88888887
Q ss_pred ccc
Q 046314 889 NCK 891 (1137)
Q Consensus 889 ~c~ 891 (1137)
+++
T Consensus 168 ~N~ 170 (229)
T 3e6j_A 168 GNP 170 (229)
T ss_dssp TSC
T ss_pred CCC
Confidence 765
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=7.5e-15 Score=178.95 Aligned_cols=145 Identities=26% Similarity=0.320 Sum_probs=123.3
Q ss_pred CCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccC
Q 046314 730 NITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG 809 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 809 (1137)
+|+.|+|++|.+..+|. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.... + ..+..+++|+.|+|++
T Consensus 66 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGN 140 (605)
T ss_dssp TCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCS
T ss_pred CCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCC
Confidence 44445555566666665 8899999999999998765 33 68999999999999998665 3 4688999999999999
Q ss_pred ccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCCCCCCcccccceecccc
Q 046314 810 STISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASN 889 (1137)
Q Consensus 810 n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~ 889 (1137)
|.+..++. +..+++|+.|+|++|.++.++. +..+++|+.|+|++|+|+.+|.+..++ +|+.|+|++
T Consensus 141 N~l~~l~~------------l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~-~L~~L~L~~ 206 (605)
T 1m9s_A 141 NKITDITV------------LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLK-NLDVLELFS 206 (605)
T ss_dssp SCCCCCGG------------GGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCT-TCSEEECCS
T ss_pred CccCCchh------------hcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCC-CCCEEEccC
Confidence 99988742 6678999999999999999776 999999999999999999999888888 999999999
Q ss_pred cccc
Q 046314 890 CKRL 893 (1137)
Q Consensus 890 c~~L 893 (1137)
|+..
T Consensus 207 N~l~ 210 (605)
T 1m9s_A 207 QECL 210 (605)
T ss_dssp EEEE
T ss_pred CcCc
Confidence 8644
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=2.5e-14 Score=151.82 Aligned_cols=147 Identities=18% Similarity=0.260 Sum_probs=93.5
Q ss_pred cEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCcc
Q 046314 732 TKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGST 811 (1137)
Q Consensus 732 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 811 (1137)
+.++++++++..+|..+. ++|+.|+|++|.+.+..+..|.++++|+.|+|++|......|..|.++++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345556666666665543 566666666666655555566666666666666666655556666666667777777766
Q ss_pred ccccCchhhccccccccccCCCCCCCEEeecCCCCCCc-ccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceeccc
Q 046314 812 ISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQAS 888 (1137)
Q Consensus 812 i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~ 888 (1137)
|+.+|... |.++++|++|+|++|.++.+ |..+..+++|+.|+|++|+++.+| .+..++ +|+.|+++
T Consensus 92 l~~l~~~~----------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~ 160 (220)
T 2v9t_B 92 ITELPKSL----------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLA 160 (220)
T ss_dssp CCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECC
T ss_pred CCccCHhH----------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC-CCCEEEeC
Confidence 66666532 45566777777777777664 445666777777777777777666 355555 66666666
Q ss_pred ccc
Q 046314 889 NCK 891 (1137)
Q Consensus 889 ~c~ 891 (1137)
+++
T Consensus 161 ~N~ 163 (220)
T 2v9t_B 161 QNP 163 (220)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=4.2e-16 Score=179.41 Aligned_cols=248 Identities=15% Similarity=0.093 Sum_probs=131.6
Q ss_pred eeecccCCchhhhhhhhhccccceeEEecCCCCCCCccC----C-CCCCC-cccEeeccCCCCccccCccccCC-----C
Q 046314 617 ELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIP----D-PSETP-SLERINLWNCTNLAWVPSSIQNF-----N 685 (1137)
Q Consensus 617 ~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p----~-~~~l~-~L~~L~L~~~~~l~~~p~~i~~L-----~ 685 (1137)
.++|++|.+....+...... .+|++|+|++|.+....+ . +..++ +|++|+|++|......+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 45677777775544432222 248888888887654443 2 45566 77778877776555545555543 6
Q ss_pred cCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCcc-----ccC-CCCCcEEec
Q 046314 686 HLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSS-----VEC-LTNLEYLYI 759 (1137)
Q Consensus 686 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-----i~~-l~~L~~L~L 759 (1137)
+|+.|+|++|..-...+..+. ..+.....+|++|+|++|.+...+.. +.. .++|++|+|
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~---------------~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELV---------------KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHH---------------HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred CccEEECcCCcCChHHHHHHH---------------HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEc
Confidence 677777776642211111000 00000113566666666666655432 233 247777777
Q ss_pred ccccccc----cccccccCCC-CCcEecccccccccccccc----cCCC-CCcceecccCccccc-----cCchhhcccc
Q 046314 760 NRCKRLK----RVSTSICKLK-SLIWLCLNECLNLEKSWSE----LGNL-KSFQYIGAHGSTISQ-----LPHLLSHLVS 824 (1137)
Q Consensus 760 ~~~~~l~----~lp~~l~~l~-~L~~L~L~~~~~~~~~~~~----l~~l-~~L~~L~l~~n~i~~-----lp~~l~~l~~ 824 (1137)
++|.+.. .++..+..++ +|++|+|++|......+.. +..+ ++|+.|++++|.+.. ++..+..
T Consensus 146 s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~--- 222 (362)
T 3goz_A 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS--- 222 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH---
T ss_pred cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc---
Confidence 7776653 2333344444 6777777777655444432 3333 466666776666664 2222211
Q ss_pred ccccccCCCCCCCEEeecCCCCCCcc-----cccCCCCCCCEEEccCCCCCcCC---------CCCCcccccceeccccc
Q 046314 825 LHASLLSGLSSLNWLNLNNCALTAIP-----EEIGCLPSLEWLELRGNNFESLP---------SIPELPPSLKWLQASNC 890 (1137)
Q Consensus 825 L~~~~l~~l~~L~~L~Ls~n~l~~lp-----~~l~~l~~L~~L~Ls~n~l~~lp---------~~~~l~~~L~~L~l~~c 890 (1137)
..++|++|+|++|.+++.+ ..+..+++|+.|+|++|.+..++ .+..++ +|+.|+++++
T Consensus 223 -------~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~-~L~~LdL~~N 294 (362)
T 3goz_A 223 -------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ-KIILVDKNGK 294 (362)
T ss_dssp -------SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC-EEEEECTTSC
T ss_pred -------CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC-ceEEEecCCC
Confidence 1246666666666666532 23455666666666666533322 233344 5555555554
Q ss_pred c
Q 046314 891 K 891 (1137)
Q Consensus 891 ~ 891 (1137)
+
T Consensus 295 ~ 295 (362)
T 3goz_A 295 E 295 (362)
T ss_dssp B
T ss_pred c
Confidence 3
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=4.5e-14 Score=148.60 Aligned_cols=155 Identities=21% Similarity=0.315 Sum_probs=120.7
Q ss_pred cCCCcEEEecCCCccccCcc-ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceec
Q 046314 728 SGNITKLNLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIG 806 (1137)
Q Consensus 728 ~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 806 (1137)
..++++|++++|.+..+|.. +..+++|++|++++|.+....+..+.++++|++|++++|......+..+.++++|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34778888888888888765 67888999999998887766666678888999999998877665556678888999999
Q ss_pred ccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccc-cCCCCCCCEEEccCCCCCcCCCCCCccccccee
Q 046314 807 AHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRGNNFESLPSIPELPPSLKWL 885 (1137)
Q Consensus 807 l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L 885 (1137)
+++|.++.+|... +..+++|++|+|++|.++++|.. +..+++|+.|+|++|.+.. .++ +|+.|
T Consensus 107 L~~N~l~~~~~~~----------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~-~l~~L 170 (208)
T 2o6s_A 107 LNTNQLQSLPDGV----------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----TCP-GIRYL 170 (208)
T ss_dssp CCSSCCCCCCTTT----------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----CTT-TTHHH
T ss_pred cCCCcCcccCHhH----------hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----CCC-CHHHH
Confidence 9988888777532 56678889999999988887664 6788899999999887653 334 78888
Q ss_pred ccccccccccCCC
Q 046314 886 QASNCKRLQFLPE 898 (1137)
Q Consensus 886 ~l~~c~~L~~lp~ 898 (1137)
+++.+..-..+|.
T Consensus 171 ~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 171 SEWINKHSGVVRN 183 (208)
T ss_dssp HHHHHHCTTTBBC
T ss_pred HHHHHhCCceeec
Confidence 8887765555554
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.3e-14 Score=151.21 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=71.4
Q ss_pred ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCcc-ccccCchhhcccccc
Q 046314 748 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGST-ISQLPHLLSHLVSLH 826 (1137)
Q Consensus 748 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~-i~~lp~~l~~l~~L~ 826 (1137)
+..+++|++|++++|.+....+..++++++|++|++++|......+..+..+++|+.|++++|. +..+|.
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--------- 154 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--------- 154 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG---------
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh---------
Confidence 4555566666666666555555556666666666666666555556666666666666666665 555542
Q ss_pred ccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCc
Q 046314 827 ASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 827 ~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
+.++++|++|++++|.+++++ .+..+++|+.|++++|++..
T Consensus 155 ---l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 155 ---LKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---GGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred ---hcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 445677888888888887776 67778888888888887653
No 121
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.54 E-value=3e-14 Score=167.16 Aligned_cols=281 Identities=14% Similarity=0.021 Sum_probs=169.3
Q ss_pred CCCCCccchhhHHHHHHHhh-cc--CC--CCeEEEEE--EccCCChhhHHHHHHHHHhhcc-----CCc-eEEEeeccch
Q 046314 182 DSSKGLVGLNSRIECIKSLL-CV--GF--PDVRIVGI--WGMGGIGKTTLAKALFNQVSNE-----FEG-NCFIENVREE 248 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~ 248 (1137)
..++.++||+.++++|.+++ .. .. ...+.+.| +|++|+||||||++++++.... +.. .+|+.
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----- 93 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----- 93 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-----
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-----
Confidence 34578999999999999988 42 11 23456666 9999999999999999987653 232 34443
Q ss_pred hccCcChHHHHHHHHHHHhCcccc--CCCCCccHHHHHhhc--CCceEEEEeCCCCH--------HHHHHHhcccCCC--
Q 046314 249 IENGVGLVHLHKQVVSLLLGERIE--MGGPNIPAYTLERLR--RTKVFFVLDDVSKF--------EQLKYFVGWLHGF-- 314 (1137)
Q Consensus 249 ~s~~~~~~~l~~~ll~~l~~~~~~--~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~--------~~l~~l~~~~~~~-- 314 (1137)
.........+..+++..+...... .+.......+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 333456677888888777432111 011122344455554 67999999999763 3344443322211
Q ss_pred -C--CCCEEEEEeCChhhHHhh---------CCCCccEEEEccCCHHHHHHHHHhhc---ccCCCCChhHHHHHHHHHHH
Q 046314 315 -C--PGSRIVVTTRDKQVLRKH---------GVNDEYVYEVERLNEDEGLELFYKYA---FRQSHCPEHLTALSKKAVRY 379 (1137)
Q Consensus 315 -~--~gsrIIiTTR~~~v~~~~---------~~~~~~~~~v~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~l~~~iv~~ 379 (1137)
+ ....||+||+...+.... .... .+++++|+.+++.++|..++ +...... .+....+++.
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~--~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~ 248 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGF--KLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDV 248 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSE--EEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHH
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCC--eeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHH
Confidence 2 334478888766533211 1222 49999999999999997654 2221122 4567788999
Q ss_pred hC------CCchhHHHHhhhhc------cC---CHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhccccc
Q 046314 380 AE------GNPLALEVLGSSLH------QK---SKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFF 444 (1137)
Q Consensus 380 ~~------G~PLal~~lg~~L~------~~---~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~ 444 (1137)
++ |+|..+..+..... +. +.+.+..++..... ...+...++.|++.++.++..+|.++
T Consensus 249 ~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~~l~~l~~~~~~~l~aia~l~ 321 (412)
T 1w5s_A 249 YGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------ASIQTHELEALSIHELIILRLIAEAT 321 (412)
T ss_dssp HCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------CCSSSSSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------cchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99 99976555543221 11 22333333322110 23455677899999999999999764
Q ss_pred C----CcCHHHHH----HHH-hhcCC------chhHHHHHHHhccCceee
Q 046314 445 K----GECKDRVL----MLL-HDRQY------NVTHVLSILIDKSLITEH 479 (1137)
Q Consensus 445 ~----~~~~~~l~----~~~-~~~~~------~~~~~l~~L~~~sLi~~~ 479 (1137)
. ......+. .+. ...|. ....+++.|.+.+||...
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 322 LGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 2 22233222 222 23332 235678999999999765
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=5.2e-17 Score=196.90 Aligned_cols=200 Identities=17% Similarity=0.181 Sum_probs=127.7
Q ss_pred cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceE
Q 046314 611 KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLL 690 (1137)
Q Consensus 611 ~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L 690 (1137)
.+++|+.|+|++|+++.+|..+..+. +|+.|++++|..+...|. .+..+...+..|..++++++|+.|
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~--~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCK--ELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHH--HHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHH--HHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccC
Confidence 56788999999999999998887777 999999977642221110 111223345567778888888888
Q ss_pred e-ccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEeccccccccccc
Q 046314 691 C-FQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVS 769 (1137)
Q Consensus 691 ~-L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp 769 (1137)
+ ++.+ .+. +|..+.+.+|.+..+|. ..|+.|+|++|.+.+ +|
T Consensus 415 ~~l~~n-~~~------------------------------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp 457 (567)
T 1dce_A 415 DPMRAA-YLD------------------------------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LC 457 (567)
T ss_dssp CGGGHH-HHH------------------------------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CC
T ss_pred cchhhc-ccc------------------------------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-Cc
Confidence 7 4432 111 12222233334444332 135555555554433 34
Q ss_pred ccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCc
Q 046314 770 TSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAI 849 (1137)
Q Consensus 770 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l 849 (1137)
. ++++++|+.|+|++|... .+|..++++++|+.|++++|.|+.+|. +.++++|+.|+|++|.++.+
T Consensus 458 ~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~------------l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 458 H-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG------------VANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp C-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGG------------GTTCSSCCEEECCSSCCCSS
T ss_pred C-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCcc------------cCCCCCCcEEECCCCCCCCC
Confidence 3 555556666666655544 556666666666666777776666652 45677888888888888886
Q ss_pred --ccccCCCCCCCEEEccCCCCCcCC
Q 046314 850 --PEEIGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 850 --p~~l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
|..+..+++|+.|+|++|+++.+|
T Consensus 524 ~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp STTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 788888888888888888888776
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=3.3e-14 Score=148.19 Aligned_cols=147 Identities=20% Similarity=0.265 Sum_probs=127.8
Q ss_pred CCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceeccc
Q 046314 729 GNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAH 808 (1137)
Q Consensus 729 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 808 (1137)
.+|+.|++++|.+..+| .+..+++|++|++++|.. .. +..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 47889999999999998 799999999999999954 33 3478899999999999999888788899999999999999
Q ss_pred Cccccc-cCchhhccccccccccCCCCCCCEEeecCCC-CCCcccccCCCCCCCEEEccCCCCCcCCCCCCcccccceec
Q 046314 809 GSTISQ-LPHLLSHLVSLHASLLSGLSSLNWLNLNNCA-LTAIPEEIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQ 886 (1137)
Q Consensus 809 ~n~i~~-lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~ 886 (1137)
+|.+.. .|.. +..+++|++|+|++|. ++++| .+..+++|+.|++++|.++.++.+..++ +|+.|+
T Consensus 121 ~n~i~~~~~~~-----------l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~-~L~~L~ 187 (197)
T 4ezg_A 121 HSAHDDSILTK-----------INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFP-KLNQLY 187 (197)
T ss_dssp SSBCBGGGHHH-----------HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCS-SCCEEE
T ss_pred CCccCcHhHHH-----------HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCC-CCCEEE
Confidence 999986 3332 4578999999999998 88887 6899999999999999999988888887 999999
Q ss_pred ccccc
Q 046314 887 ASNCK 891 (1137)
Q Consensus 887 l~~c~ 891 (1137)
+++++
T Consensus 188 l~~N~ 192 (197)
T 4ezg_A 188 AFSQT 192 (197)
T ss_dssp ECBC-
T ss_pred eeCcc
Confidence 98875
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=3.3e-14 Score=163.32 Aligned_cols=160 Identities=20% Similarity=0.267 Sum_probs=125.1
Q ss_pred CCCCCc-ccCCCcEEEecCCCccccCcc-cc-CCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccC
Q 046314 721 LTEFPR-ISGNITKLNLCDTAIEEVPSS-VE-CLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELG 797 (1137)
Q Consensus 721 l~~~~~-~~~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~ 797 (1137)
++.+|. ...+++.|+|++|.+..++.. +. .+++|+.|+|++|.+....+..|.++++|++|+|++|......+..|.
T Consensus 30 l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 109 (361)
T 2xot_A 30 LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS 109 (361)
T ss_dssp CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC
Confidence 444453 233578888888999888766 44 889999999999988877778889999999999999887766666788
Q ss_pred CCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccccc----CCCCCCCEEEccCCCCCcCC
Q 046314 798 NLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEI----GCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 798 ~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~Ls~n~l~~lp 873 (1137)
++++|+.|++++|.|..++.. .|.++++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+|+.+|
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~----------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRN----------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTT----------TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCCEEECCCCcccEECHH----------HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 999999999999988877542 2667889999999999999988765 57899999999999999888
Q ss_pred --CCCCcccc--cceecccccc
Q 046314 874 --SIPELPPS--LKWLQASNCK 891 (1137)
Q Consensus 874 --~~~~l~~~--L~~L~l~~c~ 891 (1137)
.+..++ . |+.|+|.+++
T Consensus 180 ~~~~~~l~-~~~l~~l~l~~N~ 200 (361)
T 2xot_A 180 LTDLQKLP-AWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHHHSC-HHHHTTEECCSSC
T ss_pred HHHhhhcc-HhhcceEEecCCC
Confidence 444555 4 4677777754
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=1.4e-13 Score=146.05 Aligned_cols=141 Identities=23% Similarity=0.254 Sum_probs=122.2
Q ss_pred CCCCCc-ccCCCcEEEecCCCccccCc-cccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCC
Q 046314 721 LTEFPR-ISGNITKLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGN 798 (1137)
Q Consensus 721 l~~~~~-~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~ 798 (1137)
++.+|. ...+++.|++++|.+..+|. .+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|......+..|..
T Consensus 23 l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 23 LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC
Confidence 444444 23478999999999999987 5899999999999999999888999999999999999999877665666899
Q ss_pred CCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCCCCCc
Q 046314 799 LKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 799 l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
+++|+.|++++|.++.++.. .+.++++|++|+|++|.++.++. .+..+++|+.|+|++|.+..
T Consensus 103 l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVD----------AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTT----------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCEeCHH----------HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999999999999988652 36778999999999999999775 58899999999999998864
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.4e-13 Score=146.02 Aligned_cols=148 Identities=20% Similarity=0.217 Sum_probs=73.0
Q ss_pred eEeccCCccCCCCCccc-CCCcEEEecCCCccccCc--cccCCCCCcEEecccccccccccccccCCCCCcEeccccccc
Q 046314 712 NIDCSFCVNLTEFPRIS-GNITKLNLCDTAIEEVPS--SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLN 788 (1137)
Q Consensus 712 ~L~ls~c~~l~~~~~~~-~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 788 (1137)
.++++++ .++.+|... ..++.|+|++|.+..++. .+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|..
T Consensus 15 ~l~~s~n-~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQ-KLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSS-CCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCC-CcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 4444442 334444322 234555555555555532 245555555555555555444444555555555555555554
Q ss_pred ccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCc-ccccCCCCCCCEEEccCC
Q 046314 789 LEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRGN 867 (1137)
Q Consensus 789 ~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n 867 (1137)
....+..+..+++|+.|++++|.++.++.. .+.++++|++|+|++|.++.+ |..+..+++|+.|+|++|
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGND----------SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTT----------SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHh----------HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 444444455555555555555555544321 133445555555555555553 444555555555555555
Q ss_pred CCC
Q 046314 868 NFE 870 (1137)
Q Consensus 868 ~l~ 870 (1137)
.+.
T Consensus 164 ~l~ 166 (220)
T 2v70_A 164 PFN 166 (220)
T ss_dssp CEE
T ss_pred CCc
Confidence 443
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=2.4e-13 Score=144.18 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=130.9
Q ss_pred CcEEEecCCCccccCccccCCCCCcEEeccccccccccc-ccccCCCCCcEecccccccccccccccCCCCCcceecccC
Q 046314 731 ITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVS-TSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG 809 (1137)
Q Consensus 731 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 809 (1137)
-+.++++++.++.+|..+. +.++.|+|++|.+.+..+ ..+.++++|++|+|++|......+..+.++++|+.|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3689999999999998764 467899999999887755 4588999999999999998877777899999999999999
Q ss_pred ccccccCchhhccccccccccCCCCCCCEEeecCCCCCCc-ccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceec
Q 046314 810 STISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQ 886 (1137)
Q Consensus 810 n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~ 886 (1137)
|.++.++... +.++++|++|+|++|.++.+ |..+..+++|+.|+|++|+++.++ .+..++ +|+.|+
T Consensus 91 N~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~ 159 (220)
T 2v70_A 91 NRLENVQHKM----------FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH-SLSTLN 159 (220)
T ss_dssp SCCCCCCGGG----------GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT-TCCEEE
T ss_pred CccCccCHhH----------hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC-CCCEEE
Confidence 9999887642 67789999999999999996 678999999999999999999984 677887 999999
Q ss_pred cccccc
Q 046314 887 ASNCKR 892 (1137)
Q Consensus 887 l~~c~~ 892 (1137)
+++++.
T Consensus 160 L~~N~l 165 (220)
T 2v70_A 160 LLANPF 165 (220)
T ss_dssp CCSCCE
T ss_pred ecCcCC
Confidence 998863
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=3.2e-13 Score=142.04 Aligned_cols=163 Identities=20% Similarity=0.226 Sum_probs=135.5
Q ss_pred cEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCcc
Q 046314 732 TKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGST 811 (1137)
Q Consensus 732 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 811 (1137)
+.++.+++++..+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|+.|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56778888999998765 4699999999999887777778999999999999998776656668999999999999999
Q ss_pred ccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccc-cCCCCCCCEEEccCCCCCcCC--CCCCcccccceeccc
Q 046314 812 ISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQAS 888 (1137)
Q Consensus 812 i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~ 888 (1137)
++.+|... +.++++|++|+|++|.++.+|.. +..+++|+.|+|++|+++.+| .+..++ +|+.|+++
T Consensus 88 l~~~~~~~----------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~ 156 (208)
T 2o6s_A 88 LQSLPNGV----------FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLH 156 (208)
T ss_dssp CCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECC
T ss_pred CCccCHhH----------hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC-CccEEEec
Confidence 99887643 56789999999999999997764 789999999999999999988 367777 99999999
Q ss_pred cccccccCCCCCCCcceeecccc
Q 046314 889 NCKRLQFLPEIPSRPEELDASLL 911 (1137)
Q Consensus 889 ~c~~L~~lp~lp~~L~~L~~~~c 911 (1137)
+|+... -+++|+.|+++..
T Consensus 157 ~N~~~~----~~~~l~~L~~~~n 175 (208)
T 2o6s_A 157 DNPWDC----TCPGIRYLSEWIN 175 (208)
T ss_dssp SCCBCC----CTTTTHHHHHHHH
T ss_pred CCCeec----CCCCHHHHHHHHH
Confidence 985432 2345666655543
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=6.8e-13 Score=141.76 Aligned_cols=149 Identities=23% Similarity=0.287 Sum_probs=123.9
Q ss_pred ceEeccCCccCCCCCc-ccCCCcEEEecCCCcccc-CccccCCCCCcEEecccccccccccccccCCCCCcEeccccccc
Q 046314 711 VNIDCSFCVNLTEFPR-ISGNITKLNLCDTAIEEV-PSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLN 788 (1137)
Q Consensus 711 ~~L~ls~c~~l~~~~~-~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 788 (1137)
+.+++++ ..++.+|. ...+|+.|+|++|.+..+ |..+..+++|++|+|++|.+....+..+.++++|+.|+|++|..
T Consensus 22 ~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 3444443 33445554 345889999999999988 55689999999999999998666667789999999999999987
Q ss_pred ccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCC
Q 046314 789 LEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGN 867 (1137)
Q Consensus 789 ~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n 867 (1137)
....+..+..+++|+.|++++|.++.+|..+ ..+++|++|+|++|.++.+|. .+..+++|+.|+|++|
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-----------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGI-----------ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTG-----------GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CccChhHhCcchhhCeEeccCCcccccCccc-----------ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 7666677899999999999999999998754 457899999999999999875 5889999999999999
Q ss_pred CCCc
Q 046314 868 NFES 871 (1137)
Q Consensus 868 ~l~~ 871 (1137)
.+..
T Consensus 170 ~~~c 173 (229)
T 3e6j_A 170 PWDC 173 (229)
T ss_dssp CBCT
T ss_pred CccC
Confidence 8874
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=7e-12 Score=145.36 Aligned_cols=274 Identities=12% Similarity=0.084 Sum_probs=174.0
Q ss_pred CCCccchhhHHHHHHHhhcc--CCCCeEEEEEEccCCChhhHHHHHHHHHhhcc------C-C-ceEEEeeccchhccCc
Q 046314 184 SKGLVGLNSRIECIKSLLCV--GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE------F-E-GNCFIENVREEIENGV 253 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F-~-~~~~~~~~~~~~s~~~ 253 (1137)
++.++||+.+++++..++.. .....+.|.|+|++|+||||||+++++.+... + . ..+++. .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-----CREVG 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-----HHHHC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-----CccCC
Confidence 37899999999999988753 23446789999999999999999999987443 2 2 233443 22333
Q ss_pred -ChHHHHHHHHHHHhCccccCCC---CCccHHHHHhhcCCceEEEEeCCCCHHH-------HHHHhcccCCCCCCCEEEE
Q 046314 254 -GLVHLHKQVVSLLLGERIEMGG---PNIPAYTLERLRRTKVFFVLDDVSKFEQ-------LKYFVGWLHGFCPGSRIVV 322 (1137)
Q Consensus 254 -~~~~l~~~ll~~l~~~~~~~~~---~~~~~~l~~~L~~kr~LlVLDdv~~~~~-------l~~l~~~~~~~~~gsrIIi 322 (1137)
....+..+++..+.+......+ ......+.+.+..++.+|||||++.... +..+.. +. .+.+||+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~---~~-~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLR---SD-ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHT---SS-SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhc---CC-cceEEEE
Confidence 5667777777777543322211 2334555666777666999999976432 333332 22 6788999
Q ss_pred EeCChhh----HHh--hCCCCccEEEEccCCHHHHHHHHHhhcc---cCCCCChhHHHHHHHHHHHhC---CCch-hHHH
Q 046314 323 TTRDKQV----LRK--HGVNDEYVYEVERLNEDEGLELFYKYAF---RQSHCPEHLTALSKKAVRYAE---GNPL-ALEV 389 (1137)
Q Consensus 323 TTR~~~v----~~~--~~~~~~~~~~v~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~l~~~iv~~~~---G~PL-al~~ 389 (1137)
||+.... ... ..... .+++++++.++..+++..++. ...... .+..+.++++++ |.|. |+..
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~~--~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~ 244 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLGP--SVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNL 244 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCCC--EEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCC--eEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHH
Confidence 9987532 111 11222 899999999999999998753 222222 244566777777 8886 4443
Q ss_pred Hhhhh--c-c---CCHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhcccccCCcCH-HHHHHHHhhcCC-
Q 046314 390 LGSSL--H-Q---KSKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFFKGECK-DRVLMLLHDRQY- 461 (1137)
Q Consensus 390 lg~~L--~-~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~-~~l~~~~~~~~~- 461 (1137)
+-... . + -+.+.+..+++... ...+..+++.|++.++..+..++....+.+. +....+....|.
T Consensus 245 l~~a~~~a~~~~~i~~~~v~~~~~~~~--------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~ 316 (384)
T 2qby_B 245 LFRAAQLASGGGIIRKEHVDKAIVDYE--------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQK 316 (384)
T ss_dssp HHHHHHHTTSSSCCCHHHHHHHHHHHH--------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCccCHHHHHHHHHHHh--------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCC
Confidence 33322 1 1 25666776666542 2346677889999999998888872121122 233344443332
Q ss_pred -----chhHHHHHHHhccCceee
Q 046314 462 -----NVTHVLSILIDKSLITEH 479 (1137)
Q Consensus 462 -----~~~~~l~~L~~~sLi~~~ 479 (1137)
.....+..|.++++|...
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 245678899999999764
No 131
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=3.9e-13 Score=146.84 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=109.1
Q ss_pred CCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccC
Q 046314 730 NITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG 809 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 809 (1137)
+|+.|++++|.+..+| .+..+++|+.|+|++|.+.+..+ +.++++|++|++++|.... ++. +.. ++|+.|++++
T Consensus 42 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~ 115 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDN 115 (263)
T ss_dssp TCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCS
T ss_pred cCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccC
Confidence 5667777777777777 57788888888888887665444 7788888888888886544 333 223 7888888888
Q ss_pred ccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCCCCCCcccccceecccc
Q 046314 810 STISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLPSIPELPPSLKWLQASN 889 (1137)
Q Consensus 810 n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~l~~~L~~L~l~~ 889 (1137)
|.++.++. +..+++|+.|+|++|.+++++ .+..+++|+.|+|++|.++.++.+..++ +|+.|++++
T Consensus 116 N~l~~~~~------------l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~l~~ 181 (263)
T 1xeu_A 116 NELRDTDS------------LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLK-KVNWIDLTG 181 (263)
T ss_dssp SCCSBSGG------------GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTSTTCC-CCCEEEEEE
T ss_pred CccCCChh------------hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhccCC-CCCEEeCCC
Confidence 88887653 566788888888888888876 6788888888888888888877777777 888888887
Q ss_pred cc
Q 046314 890 CK 891 (1137)
Q Consensus 890 c~ 891 (1137)
|+
T Consensus 182 N~ 183 (263)
T 1xeu_A 182 QK 183 (263)
T ss_dssp EE
T ss_pred Cc
Confidence 75
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=2.8e-13 Score=155.62 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=88.7
Q ss_pred EEecCCCccccCc-cccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccc
Q 046314 734 LNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTI 812 (1137)
Q Consensus 734 L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i 812 (1137)
|+|++|.|..++. .+..+++|++|+|++|.+....+..|.++++|+.|+|++|......+..|.++++|+.|++++|.|
T Consensus 69 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 3333344444443 356666666666666666555555666777777777777776666667777788888888888888
Q ss_pred cccCchhhccccccccccCCCCCCCEEeecCCCCCCccc-ccCCCCC--CCEEEccCCCCCc
Q 046314 813 SQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE-EIGCLPS--LEWLELRGNNFES 871 (1137)
Q Consensus 813 ~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~--L~~L~Ls~n~l~~ 871 (1137)
+.+|..+.. .+..+++|+.|+|++|.++.+|. .+..++. |+.|+|++|.+..
T Consensus 149 ~~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 149 SRFPVELIK-------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CSCCGGGTC-----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CeeCHHHhc-------CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 877764310 01457899999999999998774 5666776 4889999998763
No 133
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=1.5e-13 Score=150.17 Aligned_cols=125 Identities=23% Similarity=0.356 Sum_probs=91.3
Q ss_pred CCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccC
Q 046314 730 NITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHG 809 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 809 (1137)
+|+.|++++|.+..+|. +..+++|++|+|++|.+.+ +|.. .. ++|++|++++|.... + ..+..+++|+.|++++
T Consensus 64 ~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 64 NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRN 137 (263)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTT
T ss_pred CCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEECCC
Confidence 34444444455555655 6677777777777776554 3322 22 777888887776554 2 3578888888888888
Q ss_pred ccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC
Q 046314 810 STISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 810 n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
|.++.++. +..+++|+.|+|++|.++++ ..+..+++|+.|++++|.+...|
T Consensus 138 N~i~~~~~------------l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 138 NKLKSIVM------------LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SCCCBCGG------------GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CcCCCChH------------HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 88887753 45678999999999999988 67889999999999999988765
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=2.7e-15 Score=181.85 Aligned_cols=209 Identities=16% Similarity=0.114 Sum_probs=130.6
Q ss_pred CCceEEEEecCCCCCCCCCC-cccccceeecccCCc-hhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEee
Q 046314 591 EKLKYLHLHKYPLRTLPENF-KPKNLIELNLPFSKI-VQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERIN 667 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i-~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~ 667 (1137)
++|+.|++++|.++.||..+ .+++|++|++++|.. ..++. .++.++ .....|. ++.+++|+.|+
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~--------ll~~~~-----~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL--------LMRALD-----PLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH--------HHHHHC-----TGGGHHHHHHHHHHHHHHC
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH--------HHHhcc-----cccCCHHHHHHHHhcccCc
Confidence 48999999999999999988 899999999977642 11111 111111 1222333 45566666666
Q ss_pred -ccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCc
Q 046314 668 -LWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPS 746 (1137)
Q Consensus 668 -L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~ 746 (1137)
++.| .+.+|..+.+.+|. +..+|. ..|+.|+|++|.++.+|.
T Consensus 416 ~l~~n-----------~~~~L~~l~l~~n~-i~~l~~-------------------------~~L~~L~Ls~n~l~~lp~ 458 (567)
T 1dce_A 416 PMRAA-----------YLDDLRSKFLLENS-VLKMEY-------------------------ADVRVLHLAHKDLTVLCH 458 (567)
T ss_dssp GGGHH-----------HHHHHHHHHHHHHH-HHHHHH-------------------------TTCSEEECTTSCCSSCCC
T ss_pred chhhc-----------ccchhhhhhhhccc-ccccCc-------------------------cCceEEEecCCCCCCCcC
Confidence 4433 12334444444322 111111 134556666666667765
Q ss_pred cccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCcccccc--Cchhhcccc
Q 046314 747 SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQL--PHLLSHLVS 824 (1137)
Q Consensus 747 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l--p~~l~~l~~ 824 (1137)
++.+++|+.|+|++|.+. .+|..++++++|+.|+|++|.... +| .++.+++|+.|++++|.|+.+ |..
T Consensus 459 -~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~------ 528 (567)
T 1dce_A 459 -LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP------ 528 (567)
T ss_dssp -GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG------
T ss_pred -ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH------
Confidence 777777777777777655 667777777777777777776554 55 677777777777777777766 443
Q ss_pred ccccccCCCCCCCEEeecCCCCCCccccc----CCCCCCCEEEc
Q 046314 825 LHASLLSGLSSLNWLNLNNCALTAIPEEI----GCLPSLEWLEL 864 (1137)
Q Consensus 825 L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L 864 (1137)
+.++++|+.|+|++|.++++|+.+ ..+++|+.|++
T Consensus 529 -----l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 529 -----LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -----HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 344677777888888777765543 23677777764
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=3.3e-13 Score=136.66 Aligned_cols=134 Identities=21% Similarity=0.265 Sum_probs=86.2
Q ss_pred CCCcEEEecCCCcc--ccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceec
Q 046314 729 GNITKLNLCDTAIE--EVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIG 806 (1137)
Q Consensus 729 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 806 (1137)
.+++.|++++|.+. .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46677777777776 6777677777777777777765544 5566677777777777766555555555666666666
Q ss_pred ccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc----ccCCCCCCCEEEccCCCCCcCC
Q 046314 807 AHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE----EIGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 807 l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
+++|.++.+|.. ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.+..+|
T Consensus 102 Ls~N~l~~~~~~---------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTL---------EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGG---------GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhH---------HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 666666655420 013455666666666666666554 5666666666666666666555
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=5.7e-12 Score=146.20 Aligned_cols=280 Identities=13% Similarity=0.102 Sum_probs=169.2
Q ss_pred CCCCccchhhHHHHHHHhhccC--CCCeEEEEEEccCCChhhHHHHHHHHHhhccC-----C-ceEEEeeccchhccCcC
Q 046314 183 SSKGLVGLNSRIECIKSLLCVG--FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF-----E-GNCFIENVREEIENGVG 254 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~-~~~~~~~~~~~~s~~~~ 254 (1137)
.++.++||+.+++++..++... ....+.+.|+|++|+||||+|+++++.....+ . ..+++. .....+
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~ 91 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-----ARHRET 91 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-----TTTSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-----CCcCCC
Confidence 4588999999999999988532 34567899999999999999999999775432 2 233343 333455
Q ss_pred hHHHHHHHHHHHhCccccCCCC---CccHHHHHhh--cCCceEEEEeCCCCHHH-------HHHHhcccCCC--CCCCEE
Q 046314 255 LVHLHKQVVSLLLGERIEMGGP---NIPAYTLERL--RRTKVFFVLDDVSKFEQ-------LKYFVGWLHGF--CPGSRI 320 (1137)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~---~~~~~l~~~L--~~kr~LlVLDdv~~~~~-------l~~l~~~~~~~--~~gsrI 320 (1137)
...+...++..+.... ...+. .....+.+.+ .+++.+||||+++.... +..+....... ..+..+
T Consensus 92 ~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRV-PFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp HHHHHHHHHHHHSCCC-CSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred HHHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 6677777777774321 11111 2233444455 35688999999977532 23333322111 446678
Q ss_pred EEEeCChhhH----Hh-hCCCCccEEEEccCCHHHHHHHHHhhcc---cCCCCChhHHHHHHHHHHHhC---CCch-hHH
Q 046314 321 VVTTRDKQVL----RK-HGVNDEYVYEVERLNEDEGLELFYKYAF---RQSHCPEHLTALSKKAVRYAE---GNPL-ALE 388 (1137)
Q Consensus 321 IiTTR~~~v~----~~-~~~~~~~~~~v~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~l~~~iv~~~~---G~PL-al~ 388 (1137)
|+||+..... .. ...-....+.+++++.++..+++...+. ...... .+..+.++++++ |.|- ++.
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ 247 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALD 247 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHH
Confidence 8888765321 01 1111113789999999999999988753 222222 234566777777 9993 333
Q ss_pred HHhhhhc-----c---CCHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhcccccCCcC---HH----HHH
Q 046314 389 VLGSSLH-----Q---KSKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFFKGEC---KD----RVL 453 (1137)
Q Consensus 389 ~lg~~L~-----~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~---~~----~l~ 453 (1137)
++..... + -+.+.++.++.... ...+..++..|++.++..++.++....+.. .. ...
T Consensus 248 ~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~--------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 248 LLRVAGEIAERRREERVRREHVYSARAEIE--------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHHHTTCSCBCHHHHHHHHHHHH--------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHh--------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 3322221 1 14556666655432 234566788999999999998886544322 22 222
Q ss_pred HHHhhcCC------chhHHHHHHHhccCceee
Q 046314 454 MLLHDRQY------NVTHVLSILIDKSLITEH 479 (1137)
Q Consensus 454 ~~~~~~~~------~~~~~l~~L~~~sLi~~~ 479 (1137)
.+....|. .+...++.|...|++...
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 33333222 245678889999999764
No 137
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=5.5e-12 Score=146.25 Aligned_cols=281 Identities=16% Similarity=0.130 Sum_probs=166.3
Q ss_pred CCCCCccchhhHHHHHHHhhccC--CCCeEEEEEEccCCChhhHHHHHHHHHhhccCC---ceEEEeeccchhccCcChH
Q 046314 182 DSSKGLVGLNSRIECIKSLLCVG--FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE---GNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~s~~~~~~ 256 (1137)
..++.|+||+.+++++.+++... ....+.+.|+|++|+||||||+++++.+...+. ..+++. ........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-----~~~~~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-----TRQIDTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-----HHHHCSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-----CCCCCCHH
Confidence 44578999999999999988642 345678999999999999999999998866542 234443 22233444
Q ss_pred HHHHHHHHHHhCccccCCCC---CccHHHHHhhc--CCceEEEEeCCCCHH------HHHHHhcccCC-CCCCCEEEEEe
Q 046314 257 HLHKQVVSLLLGERIEMGGP---NIPAYTLERLR--RTKVFFVLDDVSKFE------QLKYFVGWLHG-FCPGSRIVVTT 324 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~---~~~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~-~~~gsrIIiTT 324 (1137)
.+...++..+.... ...+. ...+.+.+.+. +++.+||||+++... .+..+...... ...+..+|+||
T Consensus 92 ~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 92 RVLADLLESLDVKV-PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHHHTTTTSCCC-CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 55555555442211 11111 11333344443 458999999996532 34444333211 13455678888
Q ss_pred CChhhHHhhC-----CCCccEEEEccCCHHHHHHHHHhhcc---cCCCCChhHHHHHHHHHHHhC---CCchhHHHH-hh
Q 046314 325 RDKQVLRKHG-----VNDEYVYEVERLNEDEGLELFYKYAF---RQSHCPEHLTALSKKAVRYAE---GNPLALEVL-GS 392 (1137)
Q Consensus 325 R~~~v~~~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~l~~~iv~~~~---G~PLal~~l-g~ 392 (1137)
++........ .-....+++++++.++..+++...+. ...... .+..+.++++++ |.|..+..+ ..
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~ 247 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRV 247 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8664322111 01113799999999999999988643 112222 445566777777 999844333 22
Q ss_pred hhc-----c---CCHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhcccccC-C---cCHHHH----HHHH
Q 046314 393 SLH-----Q---KSKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFFK-G---ECKDRV----LMLL 456 (1137)
Q Consensus 393 ~L~-----~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~---~~~~~l----~~~~ 456 (1137)
... + -+.+.++.++.... ...+.-.+.+|++.++.++..+|.+.+ + .....+ ..+.
T Consensus 248 a~~~a~~~~~~~i~~~~v~~a~~~~~--------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~ 319 (386)
T 2qby_A 248 SGEIAERMKDTKVKEEYVYMAKEEIE--------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNIC 319 (386)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHH--------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccCHHHHHHHHHHHh--------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHH
Confidence 211 1 13445555554332 235667788899999999998886533 2 122222 3333
Q ss_pred hhcCC------chhHHHHHHHhccCceee
Q 046314 457 HDRQY------NVTHVLSILIDKSLITEH 479 (1137)
Q Consensus 457 ~~~~~------~~~~~l~~L~~~sLi~~~ 479 (1137)
...|. ....+++.|.+.++|...
T Consensus 320 ~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 320 KKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 33222 245678899999999764
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=4.3e-12 Score=131.41 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=107.3
Q ss_pred cEEEecCCCccccCccccCCCCCcEEecccccccccccc-cccCCCCCcEecccccccccccccccCCCCCcceecccCc
Q 046314 732 TKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVST-SICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGS 810 (1137)
Q Consensus 732 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n 810 (1137)
+.|++++++++++|..+.. +|+.|++++|.+.+..+. .+.++++|++|+|++|......|..+.++++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888888886644 889999999887666554 4888999999999999888777888999999999999999
Q ss_pred cccccCchhhccccccccccCCCCCCCEEeecCCCCCCc-ccccCCCCCCCEEEccCCCCCc
Q 046314 811 TISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 811 ~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
.|+.++.. .+.++++|++|+|++|.++.+ |..+..+++|+.|+|++|.++.
T Consensus 89 ~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNK----------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSS----------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHH----------HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 98877653 256789999999999999984 7788999999999999998874
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=4.3e-13 Score=167.73 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=84.1
Q ss_pred EEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCcccc
Q 046314 734 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTIS 813 (1137)
Q Consensus 734 L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~ 813 (1137)
+++..|.+...|..+..+++|+.|+|++|.+. .+|..+.++++|++|+|++|... .+|..+.++++|+.|+|++|.|+
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34444555545555666677777777776654 55555666777777777776555 56666777777777777777777
Q ss_pred ccCchhhccccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceecccccc
Q 046314 814 QLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 814 ~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~ 891 (1137)
.+|..+ .++++|++|+|++|.++.+|..++.+++|+.|+|++|.|+..+ .+..+...+..|+++++.
T Consensus 284 ~lp~~~-----------~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 284 SLPAEL-----------GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp SCCSSG-----------GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccChhh-----------cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCc
Confidence 666543 3356677777777777777777777777777777777776433 221111112234444433
Q ss_pred ccccCCCCCCCcceeecccc
Q 046314 892 RLQFLPEIPSRPEELDASLL 911 (1137)
Q Consensus 892 ~L~~lp~lp~~L~~L~~~~c 911 (1137)
. ...+|..|+.|++.+.
T Consensus 353 l---~~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 353 P---EIPLPHERRFIEINTD 369 (727)
T ss_dssp C---CCCCCCC---------
T ss_pred c---cCcCccccceeEeecc
Confidence 2 2344556666665544
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=3.6e-13 Score=168.40 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=63.2
Q ss_pred ceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCC
Q 046314 639 KLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFC 718 (1137)
Q Consensus 639 ~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c 718 (1137)
+|+.|+|++|.+....+.+..+++|++|+|++|... .+|..+++|++|+.|+|++|. +..+|..+.
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~------------ 290 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELG------------ 290 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGG------------
T ss_pred CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhc------------
Confidence 555555555554322223344555555555555333 455555555555555555543 223333221
Q ss_pred ccCCCCCcccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCC-CcEecccccccccccc
Q 046314 719 VNLTEFPRISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKS-LIWLCLNECLNLEKSW 793 (1137)
Q Consensus 719 ~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~-L~~L~L~~~~~~~~~~ 793 (1137)
.+.+|++|+|++|.+..+|..|+.+++|+.|+|++|.+.+.+|..+..+.. +..|+|++|.....+|
T Consensus 291 --------~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 291 --------SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp --------GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred --------CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 011334444444555555555666666666666666655555555443321 1224455554444333
No 141
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=4.5e-12 Score=128.25 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=111.5
Q ss_pred cCCCCCcEEeccccccc-ccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccc-cCchhhcccccc
Q 046314 749 ECLTNLEYLYINRCKRL-KRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQ-LPHLLSHLVSLH 826 (1137)
Q Consensus 749 ~~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~-lp~~l~~l~~L~ 826 (1137)
...++|+.|++++|.+. +.+|..+..+++|+.|++++|..... ..+..+++|+.|++++|.+.. +|..+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~------- 91 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA------- 91 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH-------
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH-------
Confidence 34588999999999987 68888899999999999999986554 778999999999999999998 55533
Q ss_pred ccccCCCCCCCEEeecCCCCCCcc--cccCCCCCCCEEEccCCCCCcCCC-----CCCcccccceecccccc
Q 046314 827 ASLLSGLSSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRGNNFESLPS-----IPELPPSLKWLQASNCK 891 (1137)
Q Consensus 827 ~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~-----~~~l~~~L~~L~l~~c~ 891 (1137)
..+++|++|+|++|.++++| ..+..+++|+.|++++|.++.+|. +..++ +|+.|++++|.
T Consensus 92 ----~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~~n~ 158 (168)
T 2ell_A 92 ----EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-QLTYLDGYDRE 158 (168)
T ss_dssp ----HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-SCCEETTEETT
T ss_pred ----hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-cCcEecCCCCC
Confidence 34789999999999999976 789999999999999999998885 56677 99999999885
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.32 E-value=4.9e-11 Score=138.42 Aligned_cols=302 Identities=14% Similarity=0.102 Sum_probs=177.1
Q ss_pred CCCCccchhhHHHHHHHhhcc----CCCCeEEEEEEccCCChhhHHHHHHHHHhhccC-CceEEEeeccchhccCcChHH
Q 046314 183 SSKGLVGLNSRIECIKSLLCV----GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF-EGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
.++.++||+.+++++..++.. +.+..+.+.|+|++|+||||||+++++...... ...+++. .........
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-----~~~~~~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-----GFIYRNFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-----TTTCCSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-----CccCCCHHH
Confidence 447899999999999998864 222334899999999999999999999876653 2334443 333445567
Q ss_pred HHHHHHHHHhCccccC--CCCCccHHHHHhhc--CCceEEEEeCCCCH--HHHHHHhcccCCCC----CCCEEEEEeCCh
Q 046314 258 LHKQVVSLLLGERIEM--GGPNIPAYTLERLR--RTKVFFVLDDVSKF--EQLKYFVGWLHGFC----PGSRIVVTTRDK 327 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~--~~~~~~~~l~~~L~--~kr~LlVLDdv~~~--~~l~~l~~~~~~~~----~gsrIIiTTR~~ 327 (1137)
+...++..+....... ......+.+.+.+. +++.+||||+++.. +.+..|...+.... .+..||+||++.
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 7777776664321110 11112223333332 56889999999763 44555544433221 366788888876
Q ss_pred hhHHhhCC-----CCccEEEEccCCHHHHHHHHHhhccc---CCCCChhHHHHHHHHHHHh---------CCCchhHHHH
Q 046314 328 QVLRKHGV-----NDEYVYEVERLNEDEGLELFYKYAFR---QSHCPEHLTALSKKAVRYA---------EGNPLALEVL 390 (1137)
Q Consensus 328 ~v~~~~~~-----~~~~~~~v~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~l~~~iv~~~---------~G~PLal~~l 390 (1137)
........ -....+.+++++.++..+++...+.. ..... .+....+++++ +|.|..+..+
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 43222110 01126999999999999999887532 22122 45667888888 7887544443
Q ss_pred hhhhc------cC---CHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhccccc---CC--cCHHHHHH--
Q 046314 391 GSSLH------QK---SKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFF---KG--ECKDRVLM-- 454 (1137)
Q Consensus 391 g~~L~------~~---~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~l~~-- 454 (1137)
..... +. +.+....+.... .. ..+ .-.+..|++.++.++..++.+. .+ .....+..
T Consensus 247 l~~a~~~a~~~~~~~i~~~~v~~~~~~~---~~-~~~----~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~ 318 (389)
T 1fnn_A 247 LYRSAYAAQQNGRKHIAPEDVRKSSKEV---LF-GIS----EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESY 318 (389)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHH---SC-CCC----HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHH---hh-hhH----HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHH
Confidence 32211 21 222233333222 11 222 3335678889998888888765 22 23333322
Q ss_pred --HHhhcCC------chhHHHHHHHhccCceeeC--------CeEE-------ehHHHHHHHHHhhhcc
Q 046314 455 --LLHDRQY------NVTHVLSILIDKSLITEHN--------NRLH-------MHELLQEMGQEIVRQE 500 (1137)
Q Consensus 455 --~~~~~~~------~~~~~l~~L~~~sLi~~~~--------~~~~-------mHdll~~~~~~i~~~e 500 (1137)
+....+. .....+..|.++++|.... +++. .|++++.+...+..+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 319 KIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 2222221 2446789999999998741 2211 4566666666655543
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=9.6e-12 Score=128.80 Aligned_cols=127 Identities=18% Similarity=0.276 Sum_probs=95.7
Q ss_pred cEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCcc
Q 046314 732 TKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGST 811 (1137)
Q Consensus 732 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 811 (1137)
+.++++++.+.++|..+. ++|+.|+|++|.+. .+|..+.++++|+.|+|++|......+..|.++++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 467777788888887653 57888888887764 566777788888888888877766666677788888888888888
Q ss_pred ccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCCCCCc
Q 046314 812 ISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 812 i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
|+.++.. .|.++++|++|+|++|.++.+|. .+..+++|+.|+|++|.+..
T Consensus 90 l~~i~~~----------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPR----------TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTT----------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHH----------HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7777642 25667888888888888888766 47778888888888887753
No 144
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=3.5e-12 Score=126.15 Aligned_cols=123 Identities=18% Similarity=0.245 Sum_probs=62.9
Q ss_pred CCCcEEeccccccc-ccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccc-cCchhhccccccccc
Q 046314 752 TNLEYLYINRCKRL-KRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQ-LPHLLSHLVSLHASL 829 (1137)
Q Consensus 752 ~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~-lp~~l~~l~~L~~~~ 829 (1137)
++|+.|++++|.+. +.+|..+..+++|+.|++++|..... ..+..+++|+.|++++|.+.. +|..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~---------- 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA---------- 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH----------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh----------
Confidence 34444444444443 33444444444444444444433222 344455555555555555554 33322
Q ss_pred cCCCCCCCEEeecCCCCCCcc--cccCCCCCCCEEEccCCCCCcCCC-----CCCcccccceeccc
Q 046314 830 LSGLSSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRGNNFESLPS-----IPELPPSLKWLQAS 888 (1137)
Q Consensus 830 l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~-----~~~l~~~L~~L~l~ 888 (1137)
.++++|++|++++|.++++| ..+..+++|++|++++|.++.+|. +..++ +|+.|+++
T Consensus 85 -~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~ 148 (149)
T 2je0_A 85 -EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY 148 (149)
T ss_dssp -HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred -hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence 22456666666666666643 556666666666666666666553 33344 55555554
No 145
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=2.7e-12 Score=127.05 Aligned_cols=128 Identities=20% Similarity=0.237 Sum_probs=109.6
Q ss_pred cCCCcEEEecCCCcc--ccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCccee
Q 046314 728 SGNITKLNLCDTAIE--EVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYI 805 (1137)
Q Consensus 728 ~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 805 (1137)
..+++.|++++|.+. .+|..+..+++|+.|++++|.+.+. ..+.++++|++|++++|.....+|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 357889999999998 8898889999999999999987665 778899999999999998887788888889999999
Q ss_pred cccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc----ccCCCCCCCEEEccC
Q 046314 806 GAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE----EIGCLPSLEWLELRG 866 (1137)
Q Consensus 806 ~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~ 866 (1137)
++++|.++.+|.. ..+..+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~---------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTI---------EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHH---------GGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHH---------HHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999876520 125568999999999999998776 688899999999874
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.4e-11 Score=123.99 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=97.1
Q ss_pred CcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCc
Q 046314 731 ITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGS 810 (1137)
Q Consensus 731 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n 810 (1137)
.+.++++++++..+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4677888888888886543 68889999988877666666788888888888888766555555777888888888888
Q ss_pred cccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccc-cCCCCCCCEEEccCCCCCc
Q 046314 811 TISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 811 ~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~ 871 (1137)
.++.+|... +.++++|++|+|++|.++.+|.. +..+++|+.|+|++|.+..
T Consensus 87 ~l~~~~~~~----------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGV----------FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTT----------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHH----------hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 877776532 45677888888888888877665 4677888888888887664
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.26 E-value=3.9e-11 Score=129.27 Aligned_cols=201 Identities=15% Similarity=0.099 Sum_probs=120.9
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHH
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHK 260 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~ 260 (1137)
+...++++||+..++.+..++..+. ..+.+.|+|++|+||||+|+++++.+...+.....- ....... .
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~---------~~~~~~~-~ 87 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP---------CGVCDNC-R 87 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC---------CSCSHHH-H
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC---------CcccHHH-H
Confidence 4455679999999999999986542 235789999999999999999998775443211000 0000000 0
Q ss_pred HHHHHHhCccccC--CCCCc---cHHHHHh-----hcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 261 QVVSLLLGERIEM--GGPNI---PAYTLER-----LRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 261 ~ll~~l~~~~~~~--~~~~~---~~~l~~~-----L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
.+.......-... ..... ...+.+. ..+++.+||+||++. .+.++.+...+.....+.++|+||+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 0000000000000 00000 0011111 235678999999965 4556666665554556788999887654
Q ss_pred hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhh
Q 046314 329 VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSL 394 (1137)
Q Consensus 329 v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L 394 (1137)
.....-......+++++++.+|..+++...+.......+ .+....++++++|+|..+..+...+
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 211100111238999999999999999988754332222 4557789999999999888766543
No 148
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.2e-11 Score=126.20 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=79.9
Q ss_pred ccCCCCCcEEecccccccccccccccCCC-CCcEecccccccccccccccCCCCCcceecccCccccccCchhhcccccc
Q 046314 748 VECLTNLEYLYINRCKRLKRVSTSICKLK-SLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLH 826 (1137)
Q Consensus 748 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~ 826 (1137)
+..+++|+.|++++|.+.. +|. +..+. +|+.|++++|..... ..+..+++|+.|++++|.++.+|..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~------- 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL------- 83 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH-------
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch-------
Confidence 3445556666666655442 232 33333 666666666654432 45666677777777777777666432
Q ss_pred ccccCCCCCCCEEeecCCCCCCccc--ccCCCCCCCEEEccCCCCCcCCC-----CCCcccccceecccccc
Q 046314 827 ASLLSGLSSLNWLNLNNCALTAIPE--EIGCLPSLEWLELRGNNFESLPS-----IPELPPSLKWLQASNCK 891 (1137)
Q Consensus 827 ~~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~-----~~~l~~~L~~L~l~~c~ 891 (1137)
+.++++|++|+|++|.++++|. .+..+++|+.|++++|.++.+|. +..++ +|+.|++++++
T Consensus 84 ---~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~-~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 ---DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-QVRVLDFQKVK 151 (176)
T ss_dssp ---HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-TCSEETTEECC
T ss_pred ---hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC-ccceeCCCcCC
Confidence 2346777777777777777776 67777788888888887777663 44455 66666666553
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=2.6e-11 Score=137.23 Aligned_cols=259 Identities=12% Similarity=0.052 Sum_probs=130.8
Q ss_pred CCceEEEEecCCCC--CCCCCCcccccceeecccCCchhhhhhhhhcc--------ccceeEEecCCCCCCCccCC--CC
Q 046314 591 EKLKYLHLHKYPLR--TLPENFKPKNLIELNLPFSKIVQIWEEKRYVK--------AFKLKSINLSHSQYLIRIPD--PS 658 (1137)
Q Consensus 591 ~~L~~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~~~--------l~~L~~L~Ls~n~~~~~~p~--~~ 658 (1137)
++|+.|+|++|.+. ..+... ...+..+.+..+.|. . ..+.. |++|+.|+|.+ . +..+++ |.
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~~I~---~-~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~ 121 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMANFVP---A-YAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFK 121 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSS-SGGGCCEEECTTEEC---T-TTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTT
T ss_pred ccCeEEecCcceeEEecCcccc-ccccccccccccccC---H-HHhcccccccccccCCCcEEECCc-c-ccchhHHHhh
Confidence 47999999999887 333222 222455555555332 2 23444 66889998888 4 344444 78
Q ss_pred CCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecC
Q 046314 659 ETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCD 738 (1137)
Q Consensus 659 ~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~ 738 (1137)
++++|+.|++.+|......+..|..+.++..+.+........ ...+....+.+|..++. .+.+..
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~------~~~i~~~~f~~~~~L~~---------~i~~~~ 186 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF------KNRWEHFAFIEGEPLET---------TIQVGA 186 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT------STTTTTSCEEESCCCEE---------EEEECT
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc------cccccccccccccccce---------eEEecC
Confidence 888899999988866655566677666666665543111000 00111111111211110 111111
Q ss_pred CCccccCccc----cCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccc
Q 046314 739 TAIEEVPSSV----ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQ 814 (1137)
Q Consensus 739 ~~i~~lp~~i----~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~ 814 (1137)
...++..+ ....++..+.+.++-...........+++|+.|+|++|.........|.++++|+.+++.+| ++.
T Consensus 187 --~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~ 263 (329)
T 3sb4_A 187 --MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT 263 (329)
T ss_dssp --TCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred --CCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce
Confidence 11111110 12233444444432111111111112455666666655544434445666666666666554 444
Q ss_pred cCchhhccccccccccCCCCCCC-EEeecCCCCCCcc-cccCCCCCCCEEEccCCCCCcCC--CCCCcccccceec
Q 046314 815 LPHLLSHLVSLHASLLSGLSSLN-WLNLNNCALTAIP-EEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQ 886 (1137)
Q Consensus 815 lp~~l~~l~~L~~~~l~~l~~L~-~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~ 886 (1137)
++.. .|.++++|+ .|++.+ .++.++ ..|.++++|+.|++++|+++.++ .+..++ +|+.++
T Consensus 264 I~~~----------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~-~L~~ly 327 (329)
T 3sb4_A 264 IGQR----------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV-PSKLIY 327 (329)
T ss_dssp ECTT----------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC-CCCEEE
T ss_pred ehHH----------HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc-chhhhc
Confidence 4432 356666666 666666 555554 45666777777777777776666 455555 666553
No 150
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=6.9e-11 Score=122.33 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=102.9
Q ss_pred CCCCCc-ccCCCcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCC
Q 046314 721 LTEFPR-ISGNITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNL 799 (1137)
Q Consensus 721 l~~~~~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l 799 (1137)
++.+|. ...+++.|++++|.+..+|..+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|......+..|..+
T Consensus 22 l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 22 LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence 334443 3347899999999999999999999999999999999988888889999999999999999888778889999
Q ss_pred CCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCC
Q 046314 800 KSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALT 847 (1137)
Q Consensus 800 ~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~ 847 (1137)
++|+.|++++|.|+.+|... +..+++|+.|+|++|.+.
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~----------~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVVPEGA----------FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTT----------TTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCCCCeeChhh----------hhcCccccEEEeCCCCee
Confidence 99999999999999888742 567899999999999875
No 151
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=7.9e-11 Score=121.87 Aligned_cols=117 Identities=23% Similarity=0.167 Sum_probs=100.2
Q ss_pred CCCCc-ccCCCcEEEecCCCccccCcc--ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCC
Q 046314 722 TEFPR-ISGNITKLNLCDTAIEEVPSS--VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGN 798 (1137)
Q Consensus 722 ~~~~~-~~~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~ 798 (1137)
+.+|. ...+++.|++++|.+..++.. +..+++|++|+|++|.+.+..|..|.++++|++|+|++|......+..+.+
T Consensus 21 ~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 100 (192)
T 1w8a_A 21 KEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG 100 (192)
T ss_dssp SSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTT
T ss_pred CcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcC
Confidence 44443 233788899999999999864 899999999999999999888999999999999999999988888888999
Q ss_pred CCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCC
Q 046314 799 LKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTA 848 (1137)
Q Consensus 799 l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~ 848 (1137)
+++|+.|++++|.++.++.. .+..+++|++|+|++|.+..
T Consensus 101 l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPG----------SFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CTTCCEEECCSSCCCEECTT----------SSTTCTTCCEEECTTCCBCC
T ss_pred CCCCCEEECCCCcCCeeCHH----------HhhcCCCCCEEEeCCCCccC
Confidence 99999999999999876432 25678999999999998874
No 152
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=1.9e-11 Score=124.72 Aligned_cols=130 Identities=15% Similarity=0.122 Sum_probs=101.0
Q ss_pred CCcEEEecCCCccccCccccCC-CCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceeccc
Q 046314 730 NITKLNLCDTAIEEVPSSVECL-TNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAH 808 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp~~i~~l-~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 808 (1137)
+|+.|++++|.+..+|. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 20 ~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp SCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 67778888888887765 4444 4889999988887654 578888889999999887665433445888899999999
Q ss_pred CccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccc----cCCCCCCCEEEccCCCCCc
Q 046314 809 GSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEE----IGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 809 ~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~Ls~n~l~~ 871 (1137)
+|.+..+|.. . .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 97 ~N~i~~~~~~-~--------~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 97 NNSLVELGDL-D--------PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp SCCCCCGGGG-G--------GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCcCCcchhh-H--------hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9988877751 0 145678899999999999888875 8889999999999987653
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=4.6e-11 Score=135.17 Aligned_cols=260 Identities=14% Similarity=0.097 Sum_probs=145.2
Q ss_pred CCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC--c--------ccccceeeccc
Q 046314 553 MSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF--K--------PKNLIELNLPF 622 (1137)
Q Consensus 553 l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~--~--------l~~L~~L~L~~ 622 (1137)
+++|+.|++++|.+. ....+.+ .++ .++.+.+..+ .+|... + +.+|+.|+|++
T Consensus 48 l~~L~~LdLs~n~i~-----------~~~~~~~--~~~-~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~ 110 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK-----------MYSGKAG--TYP-NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE 110 (329)
T ss_dssp CTTCCEEEEEEEEEC-----------CEEESSS--SSG-GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT
T ss_pred hccCeEEecCcceeE-----------EecCccc--ccc-cccccccccc---ccCHHHhcccccccccccCCCcEEECCc
Confidence 889999999887521 0122221 222 2455555555 455544 6 89999999998
Q ss_pred CCchhhhhhhhhccccceeEEecCCCCCCCccCC-CCCCCcccEeeccCCCC----ccccCccccCCCcCc-eEeccCCc
Q 046314 623 SKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD-PSETPSLERINLWNCTN----LAWVPSSIQNFNHLS-LLCFQGCK 696 (1137)
Q Consensus 623 n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~~~l~~L~~L~L~~~~~----l~~~p~~i~~L~~L~-~L~L~~c~ 696 (1137)
.++.+... .+..|++|+.|++++|.+....+. |..+.++..+.+..... ...-+..+.++..|+ .+.+....
T Consensus 111 -~i~~I~~~-aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~ 188 (329)
T 3sb4_A 111 -KIKNIEDA-AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG 188 (329)
T ss_dssp -TCCEECTT-TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC
T ss_pred -cccchhHH-HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC
Confidence 88877544 466677999999999886654444 67777777777654211 111122344444454 33333222
Q ss_pred CcccCC--CCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccc-cCCCCCcEEeccccccccccccccc
Q 046314 697 NLRSFP--SNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSV-ECLTNLEYLYINRCKRLKRVSTSIC 773 (1137)
Q Consensus 697 ~l~~lp--~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~l~~lp~~l~ 773 (1137)
.+.... ..+... ++..+.+.++-...-...+ ..+++|+.|+|++|.+...-+..|.
T Consensus 189 ~l~~~~~~~~~~~~---------------------~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 189 KLEDEIMKAGLQPR---------------------DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp CHHHHHHHTTCCGG---------------------GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred cHHHHHhhcccCcc---------------------ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 111100 001112 3333333332111100111 1256666666666655544445566
Q ss_pred CCCCCcEecccccccccccccccCCCCCcc-eecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc-
Q 046314 774 KLKSLIWLCLNECLNLEKSWSELGNLKSFQ-YIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE- 851 (1137)
Q Consensus 774 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~-~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~- 851 (1137)
++++|++|++.+| ........|.++++|+ .+.+.+ .++.++. ..|.++++|+.|++++|.++.++.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~----------~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF----------GAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT----------TTTTTCTTEEEEEECSSCCCEECTT
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch----------hhhhCCccCCEEEeCCCccCccchh
Confidence 6666666666665 2333344566777777 776665 4555443 236777888888888888887654
Q ss_pred ccCCCCCCCEEEc
Q 046314 852 EIGCLPSLEWLEL 864 (1137)
Q Consensus 852 ~l~~l~~L~~L~L 864 (1137)
.|.++++|+.|..
T Consensus 316 aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 316 LFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCCCEEEC
T ss_pred hhcCCcchhhhcc
Confidence 6778888887753
No 154
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.12 E-value=4.9e-10 Score=118.66 Aligned_cols=189 Identities=11% Similarity=0.072 Sum_probs=118.1
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEEeeccchhccCcChHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
.+....+++|++..++++..++.... .+.+.|+|++|+|||++|+++++.+... +...+...+ .+...+...+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 85 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN----ASDERGIDVV 85 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE----TTCTTCHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec----cccccChHHH
Confidence 34455789999999999999987542 2348999999999999999999987443 332222221 1222232222
Q ss_pred HHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChhhH-HhhCC
Q 046314 259 HKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQVL-RKHGV 335 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~~~~ 335 (1137)
... +....... .....++.+||+||++.. +..+.+...+.....+.++|+||+..... ....
T Consensus 86 ~~~-~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~- 150 (226)
T 2chg_A 86 RHK-IKEFARTA-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ- 150 (226)
T ss_dssp HHH-HHHHHTSC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred HHH-HHHHhccc-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH-
Confidence 222 11111100 011356889999999763 44555554444445678899998865421 1111
Q ss_pred CCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHh
Q 046314 336 NDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLG 391 (1137)
Q Consensus 336 ~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg 391 (1137)
.....+++++++.++..+++...+.......+ .+....+++.++|+|..+..+.
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 11227999999999999999887643222211 4556778899999998655443
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.09 E-value=2.4e-09 Score=123.90 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=131.0
Q ss_pred ceecCCCCCCCCCCceEEEEecCCCCCCCCCC-cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCCC
Q 046314 579 KVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF-KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDP 657 (1137)
Q Consensus 579 ~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~ 657 (1137)
...++...+.-. +|+.+.+..+ ++.++... .-.+|+.+.|+. .++.+... .+..|.+|+.++|++|.+.......
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~-aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKED-IFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSS-TTTTCTTCCEEECTTSCCSEECTTT
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHH-HhhCcccCCeeecCCCcceEechhh
Confidence 344555444443 5777776654 66666543 334677777775 55555433 3555667888888777654433332
Q ss_pred CCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEec
Q 046314 658 SETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLC 737 (1137)
Q Consensus 658 ~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~ 737 (1137)
-...+|+.+.|..+ ....-...|.++++|+.+.+..+ +..++.... .. .+|+.+.+
T Consensus 200 F~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF------------------~~--~~L~~i~l- 255 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAF------------------RE--SGITTVKL- 255 (401)
T ss_dssp TTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTT------------------TT--CCCSEEEE-
T ss_pred EeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccc------------------cc--CCccEEEe-
Confidence 23578888888643 22233456777778888877642 333332210 00 13444444
Q ss_pred CCCccccCc-cccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccC
Q 046314 738 DTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLP 816 (1137)
Q Consensus 738 ~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp 816 (1137)
.+.+..++. .|..+++|+.+++.++.... +.........|.++++|+.+.+. +.++.++
T Consensus 256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~ 315 (401)
T 4fdw_A 256 PNGVTNIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIP-ESIRILG 315 (401)
T ss_dssp ETTCCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCC-TTCCEEC
T ss_pred CCCccEEChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeC-CceEEEh
Confidence 233455533 35666666666666554320 00001122334444555555444 2233333
Q ss_pred chhhccccccccccCCCCCCCEEeecCCCCCCcc-cccCCCCCCCEEEccCCCCCcCC--CCCCcccccceeccc
Q 046314 817 HLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQAS 888 (1137)
Q Consensus 817 ~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~ 888 (1137)
. ..|.++++|+.|.|..+ ++.++ ..|.++ +|+.|++++|.+..++ .+..++.+++.|.+-
T Consensus 316 ~----------~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 316 Q----------GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp T----------TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred h----------hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 2 23556666666666433 55443 345566 6777777776666555 444554455555554
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.09 E-value=4e-09 Score=121.98 Aligned_cols=237 Identities=11% Similarity=0.119 Sum_probs=141.8
Q ss_pred CceEEEEecCCCCCCCCCC-cccccceeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC--CCCCCcccEeec
Q 046314 592 KLKYLHLHKYPLRTLPENF-KPKNLIELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD--PSETPSLERINL 668 (1137)
Q Consensus 592 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~~~l~~L~~L~L 668 (1137)
.++.+.+.+ .++.++... .-.+|+.+.|+.+ ++.+....... + +|+.+.|..+ +..++. |.++++|+.++|
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-S-TVQEIVFPST--LEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-C-CCCEEECCTT--CCEECSSTTTTCTTCCEEEC
T ss_pred CccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-C-CceEEEeCCC--ccEehHHHhhCcccCCeeec
Confidence 455555543 355555543 3347999999876 77775554333 3 8999999863 444543 899999999999
Q ss_pred cCCCCccccCccccCCCcCceEeccCCcCcccCCCCCCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCccc
Q 046314 669 WNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSV 748 (1137)
Q Consensus 669 ~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i 748 (1137)
.+|. +..++...-...+|+.+.|..+ +..++... |
T Consensus 188 ~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~a------------------------------------------F 222 (401)
T 4fdw_A 188 SKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQA------------------------------------------F 222 (401)
T ss_dssp TTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTT------------------------------------------T
T ss_pred CCCc-ceEechhhEeecccCEEEeCCc--hheehhhH------------------------------------------h
Confidence 9874 4444443333577777777532 33333221 3
Q ss_pred cCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhcccccccc
Q 046314 749 ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHAS 828 (1137)
Q Consensus 749 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~ 828 (1137)
..+++|+.++|..+ +...-...|.+ .+|+.+.+.+ .........|.++++|+.+.+.++.+..- ....+...
T Consensus 223 ~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~-----~~~~I~~~ 294 (401)
T 4fdw_A 223 LKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDD-----PEAMIHPY 294 (401)
T ss_dssp TTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCC-----TTCEECTT
T ss_pred hCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCC-----cccEECHH
Confidence 33444444444432 11111222333 4555555522 12222234566666666666666544310 01122234
Q ss_pred ccCCCCCCCEEeecCCCCCCcc-cccCCCCCCCEEEccCCCCCcCC--CCCCcccccceecccccc
Q 046314 829 LLSGLSSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 829 ~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~ 891 (1137)
.|.++++|+.++|. ++++.++ ..+.++++|+.|.|..| ++.++ .+..+ +|+.|.+.++.
T Consensus 295 aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~--~L~~l~l~~n~ 356 (401)
T 4fdw_A 295 CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT--GIKEVKVEGTT 356 (401)
T ss_dssp TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS--CCCEEEECCSS
T ss_pred HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC--CCCEEEEcCCC
Confidence 58899999999999 4577765 46888999999999654 77777 45554 89999998763
No 157
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.08 E-value=6.4e-10 Score=113.36 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=95.7
Q ss_pred CCCcEEEecCCCccccCcc-ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecc
Q 046314 729 GNITKLNLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGA 807 (1137)
Q Consensus 729 ~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 807 (1137)
.+++.|++++|.+..+|.. +..+++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4788889999999988775 688999999999999887776677899999999999999877766667899999999999
Q ss_pred cCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCc
Q 046314 808 HGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAI 849 (1137)
Q Consensus 808 ~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~l 849 (1137)
++|.++.+|... +..+++|++|+|++|.+...
T Consensus 108 ~~N~l~~~~~~~----------~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGI----------FDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTT----------TTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHH----------hcCCcccCEEEecCCCeecc
Confidence 999999888643 56789999999999988763
No 158
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=1.9e-12 Score=134.93 Aligned_cols=118 Identities=23% Similarity=0.211 Sum_probs=86.7
Q ss_pred CccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchh
Q 046314 740 AIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLL 819 (1137)
Q Consensus 740 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l 819 (1137)
.++.+|..+..+++|++|++++|.+.+ +| .+.++++|++|++++|... .+|..+..+++|+.|++++|.++.+|.
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~-- 110 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-- 110 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHH--
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCc--
Confidence 566667677888888888888887655 56 7777888888888887654 566666667788888888887777652
Q ss_pred hccccccccccCCCCCCCEEeecCCCCCCccc--ccCCCCCCCEEEccCCCCCcC
Q 046314 820 SHLVSLHASLLSGLSSLNWLNLNNCALTAIPE--EIGCLPSLEWLELRGNNFESL 872 (1137)
Q Consensus 820 ~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~l 872 (1137)
+..+++|++|++++|.++.++. .+..+++|++|++++|.+...
T Consensus 111 ----------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 111 ----------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp ----------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ----------cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 2345677888888888887654 677788888888888877543
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=2.3e-09 Score=120.79 Aligned_cols=189 Identities=15% Similarity=0.185 Sum_probs=116.3
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEEeeccchhccCcChHHHH
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFIENVREEIENGVGLVHLH 259 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~s~~~~~~~l~ 259 (1137)
|...++++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+... +...+...+ .+...+...+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~i- 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGIDVV- 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHHHH-
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChHHH-
Confidence 4455779999999999999986543 3338999999999999999999986432 222222111 1222222222
Q ss_pred HHHHHHHhCccccCCCCCccHHHHHhh-cCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCChhh-HHhhCC
Q 046314 260 KQVVSLLLGERIEMGGPNIPAYTLERL-RRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDKQV-LRKHGV 335 (1137)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~v-~~~~~~ 335 (1137)
++++..+.... ..+ .+++.++|+||++. .+..+.|...+....++.++|+||+...- .....
T Consensus 90 ~~~~~~~~~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~- 155 (323)
T 1sxj_B 90 RNQIKHFAQKK-------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ- 155 (323)
T ss_dssp HTHHHHHHHBC-------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred HHHHHHHHhcc-------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH-
Confidence 22222221000 011 34588999999976 34445554444434567888888876532 11111
Q ss_pred CCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch-hHHHHhh
Q 046314 336 NDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL-ALEVLGS 392 (1137)
Q Consensus 336 ~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL-al~~lg~ 392 (1137)
.....+++++++.++..+++...+.......+ .+....+++.++|.|. |+..+..
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT--NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11237999999999999999887643222211 3556788999999995 4454443
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.00 E-value=2.1e-08 Score=116.31 Aligned_cols=132 Identities=12% Similarity=0.016 Sum_probs=80.4
Q ss_pred cccccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC--cccccceee
Q 046314 542 GINLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF--KPKNLIELN 619 (1137)
Q Consensus 542 ~~~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~ 619 (1137)
...+...||.++++|+.+.+.. ....+++..+.-..+|+.+++..+ ++.++... ++.+|+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~--------------~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~ 123 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS--------------TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSIL 123 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT--------------TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCC--------------CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhc
Confidence 3457889999999999998843 345666665555468999988654 77776654 678888887
Q ss_pred cccCCchhhhhhhhhccccceeEEecCCCCCCCccC--CCCCCCcccEeeccCCCCccccCccccCCCcCceEeccC
Q 046314 620 LPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIP--DPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQG 694 (1137)
Q Consensus 620 L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p--~~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~ 694 (1137)
++.+ +..+... .+..+..+........ ..+. .|.++.+|+.+.+.++ ....-...|.++.+|+.+.+..
T Consensus 124 ~p~~-l~~i~~~-aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 124 LPLM-LKSIGVE-AFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CCTT-CCEECTT-TTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccCc-eeeecce-eeecccccccccCccc---cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence 7654 3333222 2222222222222221 2222 2677888888888653 2222334567777788777754
No 161
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=1.3e-09 Score=110.52 Aligned_cols=106 Identities=23% Similarity=0.317 Sum_probs=73.1
Q ss_pred cEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCcc
Q 046314 732 TKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGST 811 (1137)
Q Consensus 732 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 811 (1137)
+.++++++.+..+|..+. ++|+.|+|++|.+.+..|..|.++ ++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l------------------------~~L~~L~Ls~N~ 68 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHL------------------------VNLQQLYFNSNK 68 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC------------------------TTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCC------------------------cCCCEEECCCCC
Confidence 567777788877777653 667777777766555545444444 455555555555
Q ss_pred ccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccc-cCCCCCCCEEEccCCCCCcCC
Q 046314 812 ISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRGNNFESLP 873 (1137)
Q Consensus 812 i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp 873 (1137)
|+.+|... |.++++|++|+|++|.++.+|.. +..+++|+.|+|++|.+...+
T Consensus 69 l~~i~~~~----------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 69 LTAIPTGV----------FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccChhH----------hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 55555432 45678888888888888887765 888999999999999887654
No 162
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=1.5e-09 Score=109.75 Aligned_cols=106 Identities=25% Similarity=0.350 Sum_probs=72.2
Q ss_pred CcEEEecCCCccccCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCc
Q 046314 731 ITKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGS 810 (1137)
Q Consensus 731 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n 810 (1137)
.+.|+++++.+..+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|+ +|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls------------------------~N 64 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD------------------------NN 64 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC------------------------SS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECC------------------------CC
Confidence 4677788888888887653 667777777776655555555555555555554 44
Q ss_pred cccccCchhhccccccccccCCCCCCCEEeecCCCCCCccc-ccCCCCCCCEEEccCCCCCcC
Q 046314 811 TISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRGNNFESL 872 (1137)
Q Consensus 811 ~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l 872 (1137)
.|+.+|... |.++++|++|+|++|.++.+|. .+..+++|+.|+|++|.+...
T Consensus 65 ~l~~l~~~~----------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 65 QLTVLPAGV----------FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CcCccChhh----------ccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 455444422 4567778888888888888765 478889999999999988754
No 163
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=2.1e-09 Score=109.02 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=79.2
Q ss_pred cEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccc-cCCCC
Q 046314 779 IWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEE-IGCLP 857 (1137)
Q Consensus 779 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~ 857 (1137)
+.+++++|.. ..+|..+. ++|+.|++++|.|+.++.. .+.++++|++|+|++|.++.+|.. +..++
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPG----------VFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTT----------TTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHH----------HhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 4555555543 44555443 6788888888888877542 266789999999999999998876 58999
Q ss_pred CCCEEEccCCCCCcCC--CCCCcccccceecccccc
Q 046314 858 SLEWLELRGNNFESLP--SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 858 ~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~ 891 (1137)
+|+.|+|++|+|+.+| .+..++ +|+.|++++++
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~L~~N~ 116 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLK-SLTHIYLYNNP 116 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSC
T ss_pred hhhEEECCCCccceeCHHHhcccc-CCCEEEeCCCC
Confidence 9999999999999999 377888 99999999885
No 164
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=1.4e-11 Score=128.23 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=109.8
Q ss_pred ccCCCCCcEEecccccccccccc------cccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhc
Q 046314 748 VECLTNLEYLYINRCKRLKRVST------SICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSH 821 (1137)
Q Consensus 748 i~~l~~L~~L~L~~~~~l~~lp~------~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~ 821 (1137)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.... +| .+..+++|+.|++++|.++.+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 44556777777777777766665 89999999999999997655 66 888999999999999999998875433
Q ss_pred cccccccccCCCCCCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcCC---CCCCcccccceecccccccccc
Q 046314 822 LVSLHASLLSGLSSLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESLP---SIPELPPSLKWLQASNCKRLQF 895 (1137)
Q Consensus 822 l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp---~~~~l~~~L~~L~l~~c~~L~~ 895 (1137)
+++|++|+|++|.++.+| .+..+++|+.|+|++|+++.+| .+..++ +|+.|++++|+....
T Consensus 92 -----------~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~-~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 92 -----------ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALD-KLEDLLLAGNPLYND 155 (198)
T ss_dssp -----------HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTT-TCSEEEECSCHHHHH
T ss_pred -----------CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCC-CCCEEEecCCccccc
Confidence 478999999999999987 6888999999999999999876 467777 999999999865433
No 165
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=3.8e-09 Score=106.68 Aligned_cols=100 Identities=22% Similarity=0.214 Sum_probs=79.4
Q ss_pred CcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcccc-cCCC
Q 046314 778 LIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEE-IGCL 856 (1137)
Q Consensus 778 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l 856 (1137)
.+.+++++|.. ..+|..+. ++|+.|++++|.|+.++.. .|.++++|++|+|++|.++.+|.. +..+
T Consensus 11 ~~~l~~s~n~l-~~ip~~~~--~~l~~L~L~~N~i~~~~~~----------~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 77 (170)
T 3g39_A 11 GTTVDCSGKSL-ASVPTGIP--TTTQVLYLYDNQITKLEPG----------VFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77 (170)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTT----------TTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCEEEeCCCCc-CccCccCC--CCCcEEEcCCCcCCccChh----------hhcCcccCCEEECCCCCcCccChhhccCC
Confidence 35566666543 33555442 6788888888888877542 266789999999999999998765 6899
Q ss_pred CCCCEEEccCCCCCcCC--CCCCcccccceecccccc
Q 046314 857 PSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 857 ~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~ 891 (1137)
++|+.|+|++|+|+.+| .+..++ +|+.|+|++++
T Consensus 78 ~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~ 113 (170)
T 3g39_A 78 TQLTQLSLNDNQLKSIPRGAFDNLK-SLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSC
T ss_pred CCCCEEECCCCccCEeCHHHhcCCC-CCCEEEeCCCC
Confidence 99999999999999998 477888 99999999886
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.86 E-value=5.3e-08 Score=109.64 Aligned_cols=268 Identities=13% Similarity=0.099 Sum_probs=152.7
Q ss_pred CCCCCCCccchhhHHHHHHHhhccC---CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVG---FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~ 256 (1137)
.|...++++|++..++++..++... ....+.|.|+|++|+|||++|+++++.....| .++. . +......
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~----~~~~~~~ 78 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-G----PAIEKPG 78 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-T----TTCCSHH
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-c----cccCChH
Confidence 3445678999999999998887531 12346788999999999999999998775332 2221 1 1111111
Q ss_pred HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCC------------------CC
Q 046314 257 HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGF------------------CP 316 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~------------------~~ 316 (1137)
.+. ..+.. . ..++.+|+||+++.. ...+.+...+... .+
T Consensus 79 ~l~----~~l~~----------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 79 DLA----AILAN----------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp HHH----HHHTT----------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred HHH----HHHHH----------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 111 11100 0 135678999999763 2333332221111 12
Q ss_pred CCEEEEEeCChhhHHhhCCCC-ccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhhc
Q 046314 317 GSRIVVTTRDKQVLRKHGVND-EYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSLH 395 (1137)
Q Consensus 317 gsrIIiTTR~~~v~~~~~~~~-~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L~ 395 (1137)
+.++|.||.........-... ...+.+++++.+|..+++...+.......+ .+....++++++|+|-.+..+...+.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 456777766433211100111 138999999999999999887644322222 45678889999999987766654432
Q ss_pred c------C---CHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhcccccCC--cCHHHHHHHHhhcCCchh
Q 046314 396 Q------K---SKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFFKG--ECKDRVLMLLHDRQYNVT 464 (1137)
Q Consensus 396 ~------~---~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~~~~~~ 464 (1137)
. . +.+....++.. +...+..+++.++..+..++....+ .....+...+........
T Consensus 216 ~~a~~~~~~~i~~~~~~~~~~~-------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~ 282 (324)
T 1hqc_A 216 DFAQVAGEEVITRERALEALAA-------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE 282 (324)
T ss_dssp TTSTTTSCSCCCHHHHHHHHHH-------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 1 1 22222222222 2233456788888888777655433 345555555433222333
Q ss_pred HHHHH-HHhccCceeeCCeEEehHHHHH
Q 046314 465 HVLSI-LIDKSLITEHNNRLHMHELLQE 491 (1137)
Q Consensus 465 ~~l~~-L~~~sLi~~~~~~~~mHdll~~ 491 (1137)
..++. +++.++|........+-+...+
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~~~~~~~~ 310 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRVPTELAYR 310 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred HHHhHHHHHhcchhcCCccceecHHHHH
Confidence 44444 7889999876544444444333
No 167
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=9e-09 Score=116.09 Aligned_cols=189 Identities=15% Similarity=0.132 Sum_probs=114.9
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe-eccchhccCcChHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE-NVREEIENGVGLVHL 258 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~s~~~~~~~l 258 (1137)
.|...++++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++.+........++. +. +...+...+
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~----~~~~~~~~~ 93 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA----SDERGINVI 93 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET----TCHHHHHTT
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec----cccCchHHH
Confidence 3445678999999999999998754 3334899999999999999999998643321111221 11 111111111
Q ss_pred HHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChhh-HHhhCC
Q 046314 259 HKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQV-LRKHGV 335 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v-~~~~~~ 335 (1137)
.. .+...... .....+++.++|+||++.. +..+.|...+.....+.++|+||....- .....
T Consensus 94 ~~-~~~~~~~~-------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~- 158 (327)
T 1iqp_A 94 RE-KVKEFART-------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ- 158 (327)
T ss_dssp HH-HHHHHHHS-------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred HH-HHHHHHhh-------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH-
Confidence 11 11111000 0001256789999999763 4455565555444567889988876532 11110
Q ss_pred CCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHh
Q 046314 336 NDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLG 391 (1137)
Q Consensus 336 ~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg 391 (1137)
.....+++++++.++..+++...+.......+ .+....+++.++|.|..+..+.
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--EEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCEEC--HHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHCCCCHHHHHHHH
Confidence 01127899999999999999887643322111 4556788899999998655443
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=4.2e-08 Score=111.66 Aligned_cols=84 Identities=13% Similarity=0.029 Sum_probs=54.9
Q ss_pred EEEecCC-CccccCccccCCCCCcEEeccc-ccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCc
Q 046314 733 KLNLCDT-AIEEVPSSVECLTNLEYLYINR-CKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGS 810 (1137)
Q Consensus 733 ~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n 810 (1137)
.++++++ ++..+|. +..+++|+.|+|++ |.+.+..+..|.+|++|+.|+|++|......|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 7788888 88888888888875 6665555566777777777777777655555555555555555555555
Q ss_pred cccccCc
Q 046314 811 TISQLPH 817 (1137)
Q Consensus 811 ~i~~lp~ 817 (1137)
.|+.+|.
T Consensus 91 ~l~~~~~ 97 (347)
T 2ifg_A 91 ALESLSW 97 (347)
T ss_dssp CCSCCCS
T ss_pred ccceeCH
Confidence 5555443
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=4.4e-08 Score=111.50 Aligned_cols=106 Identities=19% Similarity=0.081 Sum_probs=86.5
Q ss_pred EEecccccccccccccccCCCCCcEecccc-cccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCC
Q 046314 756 YLYINRCKRLKRVSTSICKLKSLIWLCLNE-CLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLS 834 (1137)
Q Consensus 756 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~ 834 (1137)
.+++++++.+..+|. +..+++|+.|+|++ |......+..|.++++|+.|+|++|.|+.++... |.+++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----------~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA----------FHFTP 80 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG----------GGSCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH----------hcCCc
Confidence 467777734566888 99999999999997 7766666678999999999999999999887632 56789
Q ss_pred CCCEEeecCCCCCCcccccCCCCCCCEEEccCCCCCcC
Q 046314 835 SLNWLNLNNCALTAIPEEIGCLPSLEWLELRGNNFESL 872 (1137)
Q Consensus 835 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 872 (1137)
+|++|+|++|.|+.+|..+....+|+.|+|.+|.+...
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCC
Confidence 99999999999999887654444499999999988754
No 170
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.65 E-value=1.6e-07 Score=107.99 Aligned_cols=197 Identities=15% Similarity=0.112 Sum_probs=115.5
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHH
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHK 260 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~ 260 (1137)
|...++++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+........ ...+......
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~----------~~~~~~~~~~ 80 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA----------TPCGVCDNCR 80 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS----------SCCSSSHHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC----------CCCcccHHHH
Confidence 4455679999999999999886542 2357889999999999999999987753321100 0000000000
Q ss_pred HHHHHHhCccc-----cCCCCCccHHHHHhh-----cCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 261 QVVSLLLGERI-----EMGGPNIPAYTLERL-----RRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 261 ~ll~~l~~~~~-----~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
.+.......-. .......+..+.+.+ .+++.++|+||++. .+..+.|...+.....+..+|++|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp HHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred HHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 11000000000 001112222233332 34678999999975 3446666555544455677777776543
Q ss_pred -hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHh
Q 046314 329 -VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLG 391 (1137)
Q Consensus 329 -v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg 391 (1137)
+..... .....+++++++.++..+++...+.......+ .+....+++.++|.|..+..+.
T Consensus 161 ~l~~~l~-sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~--~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 161 KLPVTIL-SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHSSSCHHHHHHHH
T ss_pred hCcHHHH-hheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHCCCCHHHHHHHH
Confidence 211111 11238999999999999999876633222211 3556788999999998776554
No 171
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.63 E-value=1.6e-07 Score=105.26 Aligned_cols=187 Identities=11% Similarity=0.089 Sum_probs=114.0
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc-cCCceEEEeeccchhccCcChHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN-EFEGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
.|...++++|++..++.+..++..+ ..+.+.++|++|+|||++|+.+++.+.. .+...+...+... ......+...
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 88 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-ERGIDVVRHK 88 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS-TTCTTTSSHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc-ccChHHHHHH
Confidence 3445577999999999999988654 3334899999999999999999998632 2221111111111 0000011111
Q ss_pred HHHHHHHHhCccccCCCCCccHHHHHhh-cCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhC
Q 046314 259 HKQVVSLLLGERIEMGGPNIPAYTLERL-RRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHG 334 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~ 334 (1137)
...+... ..+ .+++.++|+|+++.. +..+.|...+....++.++|+||.... +.....
T Consensus 89 ~~~~~~~------------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 89 IKEFART------------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp HHHHHHS------------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred HHHHHhc------------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 1111100 001 256789999999753 445667666665566788888886654 211111
Q ss_pred CCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 335 VNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 335 ~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
.....+++.+++.++..+++...+.......+ .+....+++.++|.+..+..+
T Consensus 151 -sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 151 -SRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp -TTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC--HHHHHHHHHTTTTCHHHHHHH
T ss_pred -hhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 11227999999999999999877644332211 455677888899998755433
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=1.5e-06 Score=100.59 Aligned_cols=301 Identities=15% Similarity=0.080 Sum_probs=162.2
Q ss_pred cccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC--cccccceeecc
Q 046314 544 NLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF--KPKNLIELNLP 621 (1137)
Q Consensus 544 ~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~ 621 (1137)
.+...+|.++++|+.+.+.++ ...++...+.-..+|+.+.+..+ ++.++... ++. +..+.+.
T Consensus 84 ~I~~~aF~~c~~L~~i~lp~~--------------l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~-~~~~~~~ 147 (394)
T 4fs7_A 84 EIGEFAFENCSKLEIINIPDS--------------VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD-FKEITIP 147 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT--------------CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC-CSEEECC
T ss_pred CcchhHhhCCCCCcEEEeCCC--------------ceEccchhhcccccchhhcccCc-eeeecceeeeccc-ccccccC
Confidence 456789999999999988542 34455554444445665554432 33333322 222 2222222
Q ss_pred cCCchhhhhhhhhccccceeEEecCCCCCCCccCC--CCCCCcccEeeccCCCCccccCccccCCCcCceEeccCCcCcc
Q 046314 622 FSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD--PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLR 699 (1137)
Q Consensus 622 ~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~ 699 (1137)
. .+..+ ....+..|.+|+.+.+.++. ..++. |.++.+|+.+.+..+ ....-...+.++..|+.+.+..+. .
T Consensus 148 ~-~~~~i-~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~ 220 (394)
T 4fs7_A 148 E-GVTVI-GDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--Y 220 (394)
T ss_dssp T-TCCEE-CTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--C
T ss_pred c-ccccc-chhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--e
Confidence 1 12222 22345666789999997653 33443 788899999998764 222233456777777777665421 1
Q ss_pred cCCCC-CCCCCCceEeccCCccCCCCCcccCCCcEEEecCCCccccCc-cccCCCCCcEEecccccccccccccccCCCC
Q 046314 700 SFPSN-LHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKS 777 (1137)
Q Consensus 700 ~lp~~-~~l~~L~~L~ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 777 (1137)
.+... +...+|+.+. +.. .+..+.. .+..+..|+.+.+..+. .......+.++..
T Consensus 221 ~i~~~~~~~~~l~~i~---------------------ip~-~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~ 277 (394)
T 4fs7_A 221 YLGDFALSKTGVKNII---------------------IPD-SFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSG 277 (394)
T ss_dssp EECTTTTTTCCCCEEE---------------------ECT-TCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTT
T ss_pred EeehhhcccCCCceEE---------------------ECC-CceecccccccccccceeEEcCCCc-ceeeccccccccc
Confidence 11111 1123333333 322 1222322 24556666666665542 2233344556666
Q ss_pred CcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc-cccCCC
Q 046314 778 LIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP-EEIGCL 856 (1137)
Q Consensus 778 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l 856 (1137)
|+.+...... .....+..+.+|+.+.+..+ ++.++ ...|.++.+|+.++|.+ .++.+. ..+.++
T Consensus 278 l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~----------~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c 342 (394)
T 4fs7_A 278 LKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIG----------EEAFESCTSLVSIDLPY-LVEEIGKRSFRGC 342 (394)
T ss_dssp CCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEEC----------TTTTTTCTTCCEECCCT-TCCEECTTTTTTC
T ss_pred cceeccCcee---eccccccccccccccccccc-cceec----------hhhhcCCCCCCEEEeCC-cccEEhHHhccCC
Confidence 6666554432 11234556666766665432 33333 23466777788777754 355554 467778
Q ss_pred CCCCEEEccCCCCCcCC--CCCCcccccceeccccccccccCCCCCCCcceeecccccccccc
Q 046314 857 PSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCKRLQFLPEIPSRPEELDASLLQKLSKY 917 (1137)
Q Consensus 857 ~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~~L~~~ 917 (1137)
++|+.++|..+ ++.++ .+..+. +|+.+.+... ++.+. -...+|++|+.+
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~lp~~--~~~~~--------~~F~~c~~L~~I 393 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCI-NLKKVELPKR--LEQYR--------YDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCT-TCCEEEEEGG--GGGGG--------GGBCTTCEEEEE
T ss_pred CCCCEEEECcc-ccEehHHHhhCCC-CCCEEEECCC--CEEhh--------heecCCCCCcEE
Confidence 88888888665 66666 566666 7777766432 22221 134677777764
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.59 E-value=1.5e-06 Score=98.21 Aligned_cols=265 Identities=12% Similarity=0.142 Sum_probs=148.8
Q ss_pred CCCCCCCccchhhHHHHHHHhhccC---CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVG---FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~ 256 (1137)
.|...++++|++..++++..++... ......|.|+|++|+|||++|++++++....|- .+. . .......
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~---~~~-~----~~~~~~~ 95 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK---TTA-A----PMIEKSG 95 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---EEE-G----GGCCSHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---Eec-c----hhccchh
Confidence 3445678999999999999888642 234556899999999999999999887654431 121 1 1111111
Q ss_pred HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCC------------------CC
Q 046314 257 HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGF------------------CP 316 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~------------------~~ 316 (1137)
.+. ..+. . ..+..+|+||+++.. +..+.|...+... .+
T Consensus 96 ~~~-~~~~--------------------~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 96 DLA-AILT--------------------N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp HHH-HHHH--------------------T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred HHH-HHHH--------------------h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 111 1110 0 235678999999753 3333333222111 12
Q ss_pred CCEEEEEeCChhhH-Hh--hCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhh
Q 046314 317 GSRIVVTTRDKQVL-RK--HGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSS 393 (1137)
Q Consensus 317 gsrIIiTTR~~~v~-~~--~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~ 393 (1137)
+.++|.||...... .. -..+ ..+++++++.++..+++...+....... ..+....+++.+.|+|-.+..+...
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~--~~i~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFG--MQFRLEFYKDSELALILQKAALKLNKTC--EEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCS--EEEECCCCCHHHHHHHHHHHHHHTTCEE--CHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcC--EEeeCCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 34666666543321 11 1222 3899999999999999988764332111 1455677888899998555443332
Q ss_pred h------ccC---CHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhcccccCC--cCHHHHHHHHhhcCCc
Q 046314 394 L------HQK---SKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFFKG--ECKDRVLMLLHDRQYN 462 (1137)
Q Consensus 394 L------~~~---~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~~~~ 462 (1137)
+ .+. +.+....++. .+..+...++..++..+..++-. .+ .....+...+....-.
T Consensus 230 ~~~~a~~~~~~~i~~~~~~~~~~-------------~~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~t 295 (338)
T 3pfi_A 230 VRDFADVNDEEIITEKRANEALN-------------SLGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENT 295 (338)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHH-------------HHTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHH
T ss_pred HHHHHHhhcCCccCHHHHHHHHH-------------HhCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHH
Confidence 1 111 1222222222 22334445666666666666655 32 2355666655443333
Q ss_pred hhHHHH-HHHhccCceee-CCeEEehHHHHHH
Q 046314 463 VTHVLS-ILIDKSLITEH-NNRLHMHELLQEM 492 (1137)
Q Consensus 463 ~~~~l~-~L~~~sLi~~~-~~~~~mHdll~~~ 492 (1137)
....++ .|++.++|... .+++....-+..+
T Consensus 296 l~~~l~~~l~~~gli~~~~~g~~~t~~~~~~~ 327 (338)
T 3pfi_A 296 IEDVIEPYLLANGYIERTAKGRIASAKSYSAL 327 (338)
T ss_dssp HHHTTHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred HHHHHhHHHHHcCceecCCCcccccHHHHHHh
Confidence 445566 78899999877 4555444433333
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=8.9e-09 Score=117.87 Aligned_cols=40 Identities=28% Similarity=0.205 Sum_probs=29.1
Q ss_pred CCCCCCEEeecCCCCCC-----cccccCCCCCCCEEEccCCCCCc
Q 046314 832 GLSSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRGNNFES 871 (1137)
Q Consensus 832 ~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~ 871 (1137)
..++|+.|+|++|.+++ ++..+...++|++|+|++|.|+.
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 45678888888888774 44556667788888888887764
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.53 E-value=5.8e-09 Score=119.41 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=103.4
Q ss_pred CCCcEEEecCCCccccC-----cccc-CCCCCcEEecccccccccccccc-cCCCCCcEeccccccccccccccc-----
Q 046314 729 GNITKLNLCDTAIEEVP-----SSVE-CLTNLEYLYINRCKRLKRVSTSI-CKLKSLIWLCLNECLNLEKSWSEL----- 796 (1137)
Q Consensus 729 ~~L~~L~L~~~~i~~lp-----~~i~-~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~~~~~~~~~~~l----- 796 (1137)
.+++.|+|++|.+.... ..+. ..++|+.|+|++|.+.......+ ..+++|++|+|++|.........+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 35677777777776432 2223 23688899999887654332222 346788999999987665433333
Q ss_pred CCCCCcceecccCccccccCc-hhhccccccccccCCCCCCCEEeecCCCCCC-----cccccCCCCCCCEEEccCCCCC
Q 046314 797 GNLKSFQYIGAHGSTISQLPH-LLSHLVSLHASLLSGLSSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRGNNFE 870 (1137)
Q Consensus 797 ~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 870 (1137)
...++|+.|++++|.|+.... .+.. .+..+++|++|+|++|.+++ ++..+..+++|++|+|++|.|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~-------~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLME-------GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHH-------HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHH-------HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 356789999999998764221 0100 13456889999999999885 4667778889999999999987
Q ss_pred cCC------CCCCcccccceecccccc
Q 046314 871 SLP------SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 871 ~lp------~~~~l~~~L~~L~l~~c~ 891 (1137)
..+ .+...+ +|+.|+|++|+
T Consensus 225 ~~g~~~l~~~L~~~~-~L~~L~Ls~N~ 250 (372)
T 3un9_A 225 DTAALALARAAREHP-SLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHHCS-SCCEEECTTSS
T ss_pred HHHHHHHHHHHHhCC-CCCEEeccCCC
Confidence 533 122334 78888888774
No 176
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.47 E-value=6.1e-07 Score=92.05 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=42.6
Q ss_pred CCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 182 DSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
...+.++||+.+++++.+.+..+ ..+.+.|+|++|+|||++|+++++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34577999999999999988643 3456889999999999999999997643
No 177
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.45 E-value=3.6e-07 Score=97.75 Aligned_cols=175 Identities=13% Similarity=0.131 Sum_probs=100.8
Q ss_pred CCCCCccchh---hHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHH
Q 046314 182 DSSKGLVGLN---SRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHL 258 (1137)
Q Consensus 182 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l 258 (1137)
...++++|.+ ..++.+..+...+ ..+.+.|+|++|+||||||+.+++........+.++. ..+ .....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~-~~~~~----- 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGI-HASIS----- 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGG-GGGSC-----
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHH-HHHHH-----
Confidence 3456788743 5566666665432 4567899999999999999999998765544445543 211 10000
Q ss_pred HHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH--H--HHHHhcccCCC-CCC-CEEEEEeCChh----
Q 046314 259 HKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE--Q--LKYFVGWLHGF-CPG-SRIVVTTRDKQ---- 328 (1137)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~--l~~l~~~~~~~-~~g-srIIiTTR~~~---- 328 (1137)
.... +.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+...
T Consensus 96 -----------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 96 -----------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -----------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -----------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 0000 111 345689999996431 1 22222211111 122 25888776422
Q ss_pred -----hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHh
Q 046314 329 -----VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLG 391 (1137)
Q Consensus 329 -----v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg 391 (1137)
+...+... ..+++++++.++..+++...+.......+ .+....++++++|++-.+..+.
T Consensus 154 ~~~~~l~~r~~~~--~~i~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 154 FVLPDLVSRMHWG--LTYQLQPMMDDEKLAALQRRAAMRGLQLP--EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCCHHHHHHHHHS--EEEECCCCCGGGHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhhhhhhhHhhcC--ceEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHccCCHHHHHHHH
Confidence 11111111 38999999999999999887643222111 4566788889999886655443
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.44 E-value=2.8e-06 Score=96.62 Aligned_cols=202 Identities=14% Similarity=0.176 Sum_probs=113.8
Q ss_pred hhHHHHHHHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHH
Q 046314 159 EAKLVQVIVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKAL 228 (1137)
Q Consensus 159 e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v 228 (1137)
+...++.+.+++..+ .++...++++|++..+++|.+.+.. .....+.|.|+|++|+|||+||+++
T Consensus 63 ~~~~~~~i~~~i~~~-----~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 63 EPKMIELIMNEIMDH-----GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CHHHHHHHHHHTBCC-----SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred ChHHHHHHHhhcccC-----CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 455666666665433 2344557899999999999887742 1123567899999999999999999
Q ss_pred HHHhhccCCceEEEeeccchhccCcCh-HHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH------
Q 046314 229 FNQVSNEFEGNCFIENVREEIENGVGL-VHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF------ 301 (1137)
Q Consensus 229 ~~~~~~~F~~~~~~~~~~~~~s~~~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------ 301 (1137)
++.....| +..+..+......+. ....+.++ ...-..++.+|+||+++..
T Consensus 138 a~~~~~~~----~~i~~~~l~~~~~g~~~~~~~~~~-------------------~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 138 ASQSGATF----FSISASSLTSKWVGEGEKMVRALF-------------------AVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp HHHTTCEE----EEEEGGGGCCSSTTHHHHHHHHHH-------------------HHHHHTCSEEEEEETHHHHTBC---
T ss_pred HHHcCCeE----EEEehHHhhccccchHHHHHHHHH-------------------HHHHhcCCeEEEEeCchhhhccCCC
Confidence 98764322 222222211111111 11111111 1122356789999999432
Q ss_pred -------HHHHHHhcccCC----CCCCCEEEEEeCChhhH-Hhh--CCCCccEEEEccCCHHHHHHHHHhhcccCCCCCh
Q 046314 302 -------EQLKYFVGWLHG----FCPGSRIVVTTRDKQVL-RKH--GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPE 367 (1137)
Q Consensus 302 -------~~l~~l~~~~~~----~~~gsrIIiTTR~~~v~-~~~--~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~ 367 (1137)
.....++..+.. ...+..||.||.....+ ... .... .+.++..+.++..+++...+........
T Consensus 195 ~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~--~i~i~~p~~~~r~~il~~~~~~~~~~l~ 272 (357)
T 3d8b_A 195 GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVK--RLYIPLPEASARKQIVINLMSKEQCCLS 272 (357)
T ss_dssp ---CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCE--EEECCCCCHHHHHHHHHHHHHTSCBCCC
T ss_pred CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCce--EEEeCCcCHHHHHHHHHHHHhhcCCCcc
Confidence 112333322221 12344556567543311 111 2233 7889999999999998877643221111
Q ss_pred hHHHHHHHHHHHhCC-CchhHHHHhh
Q 046314 368 HLTALSKKAVRYAEG-NPLALEVLGS 392 (1137)
Q Consensus 368 ~~~~l~~~iv~~~~G-~PLal~~lg~ 392 (1137)
.+....+++.+.| .+-.+..+..
T Consensus 273 --~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 273 --EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp --HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455677888888 4555555543
No 179
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=1e-06 Score=100.24 Aligned_cols=198 Identities=9% Similarity=0.091 Sum_probs=112.4
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc--cCCceEEEeeccchhccCcChHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN--EFEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
.|...++++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.+.. .+...+.-.+ .+...+...
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~~~ 105 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGISI 105 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccchHH
Confidence 34456789999999999999986543 233899999999999999999987642 1222222111 111123322
Q ss_pred HHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhC
Q 046314 258 LHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHG 334 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~ 334 (1137)
+.. .+........ . ..........-..++-+|++|+++.. +..+.|...+.......++|++|.... +.....
T Consensus 106 ~~~-~~~~~~~~~~--~-~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 106 VRE-KVKNFARLTV--S-KPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp HTT-HHHHHHHSCC--C-CCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHH-HHHHHhhhcc--c-ccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 222 1111111100 0 00000001111245679999998653 334444443333345667777775443 111110
Q ss_pred CCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHH
Q 046314 335 VNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVL 390 (1137)
Q Consensus 335 ~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~l 390 (1137)
.....+++++++.++..+.+...+......-+ .+..+.++++++|.|-.+..+
T Consensus 182 -sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 182 -SQCSKFRFKALDASNAIDRLRFISEQENVKCD--DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp -HHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHTSSCHHHHHHH
T ss_pred -ccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 01127899999999999999887643322211 456788899999998764443
No 180
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.43 E-value=8.2e-07 Score=97.78 Aligned_cols=182 Identities=17% Similarity=0.225 Sum_probs=104.2
Q ss_pred CCCCCCCccchhhHHHHHHHhhccC-----------CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccch
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVG-----------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREE 248 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~ 248 (1137)
+....++++|++..+++|.+.+... ....+.+.|+|++|+|||+||+++++.....|- ..+..+.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~----~v~~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI----RVVGSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE----EEEGGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEehHHH
Confidence 3445578999999999998877431 134556899999999999999999988644332 1111110
Q ss_pred hccCcCh-HHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhccc
Q 046314 249 IENGVGL-VHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWL 311 (1137)
Q Consensus 249 ~s~~~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~ 311 (1137)
.....+. ......+ +......++.+|+||+++.. ..+..++..+
T Consensus 88 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 88 VKKFIGEGASLVKDI-------------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp CCCSTTHHHHHHHHH-------------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHH-------------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 1111111 1111111 12222345689999999653 1233333332
Q ss_pred CC--CCCCCEEEEEeCChhhHHh-----hCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCC-C
Q 046314 312 HG--FCPGSRIVVTTRDKQVLRK-----HGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEG-N 383 (1137)
Q Consensus 312 ~~--~~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G-~ 383 (1137)
.. ...+..||.||.....+.. ...+. .+.++.++.++..+++..++.+.....+ .....++..+.| .
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~--~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~ 223 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDR--IIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCV 223 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEE--EEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCC
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCe--EEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCC
Confidence 21 2345677888875542211 12222 7999999999999999888654332221 112455666666 3
Q ss_pred chhHHH
Q 046314 384 PLALEV 389 (1137)
Q Consensus 384 PLal~~ 389 (1137)
|-.++.
T Consensus 224 ~~~i~~ 229 (285)
T 3h4m_A 224 GAELKA 229 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 434443
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=2.4e-06 Score=102.18 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=106.1
Q ss_pred CCCCCCCccchhhHHHHHHHhhccC---------------CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEee
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVG---------------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIEN 244 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 244 (1137)
.|...++++|++..++++..++... .+..+.+.|+|++|+||||+|+++++.+. +. .+.+ +
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n 109 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-N 109 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-C
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-e
Confidence 3445678999999999999998641 01347899999999999999999999872 21 1122 1
Q ss_pred ccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHH--hhcCCceEEEEeCCCCH-----HHHHHHhcccCCCCCC
Q 046314 245 VREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLE--RLRRTKVFFVLDDVSKF-----EQLKYFVGWLHGFCPG 317 (1137)
Q Consensus 245 ~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~--~L~~kr~LlVLDdv~~~-----~~l~~l~~~~~~~~~g 317 (1137)
.+.... .......+....... ..........+ ....++.+||+|+|+.. ..+..+...+. ..+
T Consensus 110 ----~s~~~~-~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~ 179 (516)
T 1sxj_A 110 ----ASDVRS-KTLLNAGVKNALDNM---SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTS 179 (516)
T ss_dssp ----TTSCCC-HHHHHHTGGGGTTBC---CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCS
T ss_pred ----CCCcch-HHHHHHHHHHHhccc---cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcC
Confidence 222222 122222222111110 00011100000 12367789999999542 11233322221 123
Q ss_pred CEEEEEeCChh--hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch-hHHHH
Q 046314 318 SRIVVTTRDKQ--VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL-ALEVL 390 (1137)
Q Consensus 318 srIIiTTR~~~--v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL-al~~l 390 (1137)
..||+++.+.. ...... .....+++++++.++..+.+...+.......+ .+....+++.++|.+- ++..+
T Consensus 180 ~~iIli~~~~~~~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFD-RVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCEEEEESCTTSSTTGGGT-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred CCEEEEEcCCCCccchhhH-hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 44666554432 111111 11237999999999999998876644222111 2345678889999654 44444
No 182
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.3e-06 Score=94.25 Aligned_cols=162 Identities=12% Similarity=0.118 Sum_probs=99.3
Q ss_pred CccchhhHHHHHHHhhcc--CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC-------ceEEEeeccchhccCcChH
Q 046314 186 GLVGLNSRIECIKSLLCV--GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE-------GNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~~~~~s~~~~~~ 256 (1137)
.+.|||.++++|...|.. ..+....+.|+|++|.|||++|+.+++++..... ..+.+. .....+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-----c~~~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-----ALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-----TTCCC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-----ccccCCHH
Confidence 389999999999988763 2356778899999999999999999998754321 123333 23344556
Q ss_pred HHHHHHHHHHhCccccCCCCCccHHHHHh---h---cCCceEEEEeCCCCH---HHHHHHhcccCCCCCCCE--EEEEeC
Q 046314 257 HLHKQVVSLLLGERIEMGGPNIPAYTLER---L---RRTKVFFVLDDVSKF---EQLKYFVGWLHGFCPGSR--IVVTTR 325 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~---L---~~kr~LlVLDdv~~~---~~l~~l~~~~~~~~~gsr--IIiTTR 325 (1137)
.+...++.++.+.... .....+.+.+. + .++++++|||+++.. +.+-.+..... ...++ ||.++-
T Consensus 96 ~~~~~I~~~L~g~~~~--~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~n 171 (318)
T 3te6_A 96 ALYEKIWFAISKENLC--GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVGG 171 (318)
T ss_dssp HHHHHHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEECC
T ss_pred HHHHHHHHHhcCCCCC--chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEec
Confidence 7788888888654321 12222223322 2 456799999999764 33333332111 12333 333343
Q ss_pred Chhh---------HHhhCCCCccEEEEccCCHHHHHHHHHhhc
Q 046314 326 DKQV---------LRKHGVNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 326 ~~~v---------~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
..+. ...++. ..+..++++.+|-.+++..++
T Consensus 172 ~~d~~~~~L~~~v~SR~~~---~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 172 HNVTIREQINIMPSLKAHF---TEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp SSCCCHHHHHTCHHHHTTE---EEEECCCCCHHHHHHHHHHHH
T ss_pred CcccchhhcchhhhccCCc---eEEEeCCCCHHHHHHHHHHHH
Confidence 3221 112221 268999999999999988775
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=1.6e-07 Score=106.47 Aligned_cols=34 Identities=29% Similarity=0.144 Sum_probs=15.7
Q ss_pred CCCCcEEeccccccccccccccc--CCCCCcEeccc
Q 046314 751 LTNLEYLYINRCKRLKRVSTSIC--KLKSLIWLCLN 784 (1137)
Q Consensus 751 l~~L~~L~L~~~~~l~~lp~~l~--~l~~L~~L~L~ 784 (1137)
+++|+.|+|..|.+.......+. .+++|++|+|+
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 45555555555543322222222 45555555553
No 184
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.36 E-value=2.5e-05 Score=90.27 Aligned_cols=288 Identities=12% Similarity=0.142 Sum_probs=172.6
Q ss_pred ccccccccCCCC-CCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCC---CCCCCCCC--cccccc
Q 046314 543 INLDSRAFTNMS-SLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYP---LRTLPENF--KPKNLI 616 (1137)
Q Consensus 543 ~~l~~~~f~~l~-~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~---l~~lp~~~--~l~~L~ 616 (1137)
..+...+|.+++ .|+.+.+.. ....+.+..+.-..+|+.+.+..+. ++.++... .+.+|+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~--------------svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~ 117 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPD--------------TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELT 117 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECT--------------TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCC
T ss_pred eEcCHhhccCCCCcCEEEEECC--------------CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccce
Confidence 356778898885 588888843 3456666555555689999888763 66666544 678888
Q ss_pred eeecccCCchhhhhhhhhccccceeEEecCCCCCCCccCC--CCCCCcccEeeccCCCCccccCccccCCCcCceEeccC
Q 046314 617 ELNLPFSKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD--PSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQG 694 (1137)
Q Consensus 617 ~L~L~~n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~ 694 (1137)
.+.+..+ ++.+.. ..+..+.+|+.+.+..+ ...+++ +..+.+|+.+.+.++ +..+....-...+|+.+.+..
T Consensus 118 ~i~~~~~-~~~I~~-~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 118 DIPILDS-VTEIDS-EAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp BCGGGTT-CSEECT-TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred eeccCCc-cceehh-hhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECC
Confidence 8887754 444432 33555668999888754 234443 678888888888653 333333222335677776643
Q ss_pred CcCcccCCCC-C-CCCCCceEeccCCccCCCCCc-----------------ccCCCcEEEecCCCccccCc-cccCCCCC
Q 046314 695 CKNLRSFPSN-L-HFVSPVNIDCSFCVNLTEFPR-----------------ISGNITKLNLCDTAIEEVPS-SVECLTNL 754 (1137)
Q Consensus 695 c~~l~~lp~~-~-~l~~L~~L~ls~c~~l~~~~~-----------------~~~~L~~L~L~~~~i~~lp~-~i~~l~~L 754 (1137)
. +..+... + ...++......... ...... ....+..+.+. +.+..+.. .+..+..|
T Consensus 192 ~--~~~i~~~af~~c~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L 267 (394)
T 4gt6_A 192 K--VTRIGTNAFSECFALSTITSDSES-YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYL 267 (394)
T ss_dssp T--CCEECTTTTTTCTTCCEEEECCSS-SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSC
T ss_pred c--ccccccchhhhccccceecccccc-cccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccc
Confidence 2 1111111 1 12233333221100 000000 00011122221 22333322 36778899
Q ss_pred cEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCC
Q 046314 755 EYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLS 834 (1137)
Q Consensus 755 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~ 834 (1137)
+.+.+.++. ...-...|.++++|+.+.+... ........|.++.+|+.+.+..+ ++.+ ....|.++.
T Consensus 268 ~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I----------~~~aF~~C~ 334 (394)
T 4gt6_A 268 ASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQI----------LDDAFAGCE 334 (394)
T ss_dssp CEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEE----------CTTTTTTCT
T ss_pred cEEeccccc-ceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEe----------hHhHhhCCC
Confidence 999887643 3334456888999999998642 23333456889999999987543 3333 334588999
Q ss_pred CCCEEeecCCCCCCcc-cccCCCCCCCEEEccCCC
Q 046314 835 SLNWLNLNNCALTAIP-EEIGCLPSLEWLELRGNN 868 (1137)
Q Consensus 835 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~ 868 (1137)
+|+.+.|..+ ++.+. ..|.++++|+.+++.++.
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 9999999654 77765 478999999999999864
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.36 E-value=7.9e-06 Score=89.13 Aligned_cols=201 Identities=15% Similarity=0.126 Sum_probs=104.0
Q ss_pred CCCccchhhHHHHHHH-------hhcc-CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcCh
Q 046314 184 SKGLVGLNSRIECIKS-------LLCV-GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGL 255 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~ 255 (1137)
...++|.+..++++.. .+.. +....+.+.|+|++|+|||++|+++++.....|- .+. ..+... ....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~---~i~-~~~~~~-g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI---KIC-SPDKMI-GFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE---EEE-CGGGCT-TCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-CHHHhc-CCch
Confidence 3567887777666555 2221 2345788999999999999999999997543321 121 111000 0000
Q ss_pred HHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH------------HHHHHHhcccCC---CCCCCEE
Q 046314 256 VHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF------------EQLKYFVGWLHG---FCPGSRI 320 (1137)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------------~~l~~l~~~~~~---~~~gsrI 320 (1137)
...... +. ..+......+..+|+||+++.. ..++.|...+.. .+....|
T Consensus 107 ~~~~~~-~~---------------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 107 TAKCQA-MK---------------KIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp HHHHHH-HH---------------HHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred HHHHHH-HH---------------HHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 110010 01 1112223356789999998543 223334332222 2234456
Q ss_pred EEEeCChhhHHhhCCCC--ccEEEEccCCH-HHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc------hhHHHHh
Q 046314 321 VVTTRDKQVLRKHGVND--EYVYEVERLNE-DEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP------LALEVLG 391 (1137)
Q Consensus 321 IiTTR~~~v~~~~~~~~--~~~~~v~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P------Lal~~lg 391 (1137)
|.||.....+....... ...+++++++. ++..+++.... . .. .+....+++.+.|.+ -++.++-
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-FK---DKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-SC---HHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-CC---HHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 77888776554422211 23789999988 55555554421 1 11 344677788888842 2222222
Q ss_pred hhhccCCHHHHHHHHHHHhcc
Q 046314 392 SSLHQKSKLDWENVLDNLKQI 412 (1137)
Q Consensus 392 ~~L~~~~~~~w~~~l~~l~~~ 412 (1137)
..-.......+..++..+.+.
T Consensus 244 ~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 244 MSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHTTSCGGGHHHHHHHHHHHT
T ss_pred HHhhhchHHHHHHHHHHHHHc
Confidence 222222334556666555443
No 186
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.35 E-value=3.2e-05 Score=88.85 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=75.3
Q ss_pred ccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccCCCCCcceecccCccccccCchhhccccccc
Q 046314 748 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHA 827 (1137)
Q Consensus 748 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~ 827 (1137)
+....+|+.+.+..+ ........+.++.+|+.+.+..+ ........+.++.+|+.+.+.. .+..++.
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~---------- 279 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPY---------- 279 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECT----------
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccc----------
Confidence 445566666666543 22223344566777777776543 2222234566677777776643 2333332
Q ss_pred cccCCCCCCCEEeecCCCCCCcc-cccCCCCCCCEEEccCCCCCcCC--CCCCcccccceecc
Q 046314 828 SLLSGLSSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQA 887 (1137)
Q Consensus 828 ~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l 887 (1137)
..|.++.+|+.+.+.++.++.++ ..+.++++|+.+.|..+ ++.++ .+..+. +|+.+.+
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~i 340 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK-ALSTISY 340 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCCCCC
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC-CCCEEEE
Confidence 34778888999999888888765 46788899999988643 66555 444444 5554443
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.29 E-value=1.4e-05 Score=88.36 Aligned_cols=196 Identities=17% Similarity=0.169 Sum_probs=109.1
Q ss_pred HHHHHHHhccccccCCCCCCCccchhhHHHHHHHhhccC----------CCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 166 IVNDILKKLECKSISSDSSKGLVGLNSRIECIKSLLCVG----------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 166 i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
+++.+...+ ....++...++++|.+..++.+.+.+... ....+.|.|+|++|+||||+|++++......
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 3 LVQLILDEI-VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp HHHHHHTTT-BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHh-ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 444555444 22134455678999999999998877421 1234678999999999999999999876433
Q ss_pred CCceEEEeeccchhccCc-ChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------
Q 046314 236 FEGNCFIENVREEIENGV-GLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF------------- 301 (1137)
Q Consensus 236 F~~~~~~~~~~~~~s~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------------- 301 (1137)
| +..+......... ......+.++ ......++.+|+||+++..
T Consensus 82 ~----~~i~~~~l~~~~~~~~~~~~~~~~-------------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 138 (297)
T 3b9p_A 82 F----LNISAASLTSKYVGDGEKLVRALF-------------------AVARHMQPSIIFIDEVDSLLSERSSSEHEASR 138 (297)
T ss_dssp E----EEEESTTTSSSSCSCHHHHHHHHH-------------------HHHHHTCSEEEEEETGGGTSBCC-----CCSH
T ss_pred e----EEeeHHHHhhcccchHHHHHHHHH-------------------HHHHHcCCcEEEeccHHHhccccccCcchHHH
Confidence 2 1112111011111 1111111111 1122356789999999542
Q ss_pred HHHHHHhcc---cCCC--CCCCEEEEEeCChh-----hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHH
Q 046314 302 EQLKYFVGW---LHGF--CPGSRIVVTTRDKQ-----VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTA 371 (1137)
Q Consensus 302 ~~l~~l~~~---~~~~--~~gsrIIiTTR~~~-----v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 371 (1137)
.....++.. .... +.+..||.||.... +.. ..+. .+.++..+.++..+++...+........ .+
T Consensus 139 ~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~--~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~ 212 (297)
T 3b9p_A 139 RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTK--RVYVSLPDEQTRELLLNRLLQKQGSPLD--TE 212 (297)
T ss_dssp HHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCE--EEECCCCCHHHHHHHHHHHHGGGSCCSC--HH
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCe--EEEeCCcCHHHHHHHHHHHHHhcCCCCC--HH
Confidence 112222221 1111 13455666776543 222 2333 7888888998888888776643322211 34
Q ss_pred HHHHHHHHhCCCch-hHHHHh
Q 046314 372 LSKKAVRYAEGNPL-ALEVLG 391 (1137)
Q Consensus 372 l~~~iv~~~~G~PL-al~~lg 391 (1137)
....+++.+.|.+- ++..+.
T Consensus 213 ~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 213 ALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHH
Confidence 45678888888875 554443
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=4.4e-06 Score=97.54 Aligned_cols=182 Identities=15% Similarity=0.128 Sum_probs=103.8
Q ss_pred CCCCcc-chhhHH--HHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCce--EEEeeccchhccCcChHH
Q 046314 183 SSKGLV-GLNSRI--ECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGN--CFIENVREEIENGVGLVH 257 (1137)
Q Consensus 183 ~~~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~--~~~~~~~~~~s~~~~~~~ 257 (1137)
..+.|| |....+ ..+....... .....+.|+|++|+||||||+++++.+...++.. +++. . ..
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~-~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-----~------~~ 170 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHP-GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----S------EK 170 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHST-TSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-----H------HH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----H------HH
Confidence 345666 654433 3333333222 2266799999999999999999999886665332 3332 1 12
Q ss_pred HHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----HHHHHHhcccCC-CCCCCEEEEEeCCh-----
Q 046314 258 LHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----EQLKYFVGWLHG-FCPGSRIVVTTRDK----- 327 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----~~l~~l~~~~~~-~~~gsrIIiTTR~~----- 327 (1137)
+..++...+... ....+.+.+..+.-+|+|||++.. ..-+.+...+.. ...|..||+||...
T Consensus 171 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 171 FLNDLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 233333333221 122234444446779999999542 222333222211 13577899988763
Q ss_pred ----hhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHH
Q 046314 328 ----QVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALE 388 (1137)
Q Consensus 328 ----~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~ 388 (1137)
.+...+.... ++++++++.++..+++...+.......+ .+....+++.+.|++-.+.
T Consensus 243 ~l~~~L~sR~~~g~--~i~l~~p~~e~r~~iL~~~~~~~~~~i~--~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 243 EFQDRLVSRFQMGL--VAKLEPPDEETRKSIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp SCCHHHHHHHHSSB--CCBCCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHhhccCCe--EEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHH
Confidence 2222232222 7899999999999999887643221111 2345667788888885443
No 189
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=4.7e-06 Score=94.82 Aligned_cols=201 Identities=10% Similarity=0.053 Sum_probs=106.5
Q ss_pred CCCCCCCccchhhHHHHHHHhh-ccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeec-------------
Q 046314 180 SSDSSKGLVGLNSRIECIKSLL-CVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENV------------- 245 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~------------- 245 (1137)
.|...++++|.+..++.+..++ ..+. ... +.|+|+.|+||||+|+.++..+...-.+.+++...
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 3455678999999999999988 5432 233 89999999999999999998653322221111100
Q ss_pred -------cc-hhccC-cChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCC
Q 046314 246 -------RE-EIENG-VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGF 314 (1137)
Q Consensus 246 -------~~-~~s~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~ 314 (1137)
-. ..+.. .......++++..+.... ... ... . ...+..++-++|||+++.. +..+.+...+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--~~~-~-ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME-QVD--FQD-S-KDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTT-C----------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhc-ccc--ccc-c-ccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 00 00000 000001122222221100 000 000 0 0002346779999999763 2234444433333
Q ss_pred CCCCEEEEEeCChh-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 046314 315 CPGSRIVVTTRDKQ-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEV 389 (1137)
Q Consensus 315 ~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~ 389 (1137)
.++.++|++|.+.. +..... .....+++++++.++..+.+...+......-+. .+....+++.++|.+-.+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~-sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIK-SQCLLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHH-hhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCCCHHHHHH
Confidence 45678888776543 222111 112389999999999999998876432211000 23456788899999864443
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.25 E-value=1.3e-05 Score=91.60 Aligned_cols=201 Identities=15% Similarity=0.115 Sum_probs=106.5
Q ss_pred CCCccchhhHHHHHHH---hhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHH
Q 046314 184 SKGLVGLNSRIECIKS---LLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHK 260 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~---~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~ 260 (1137)
.+++||++..++.+.. .+..+....+.+.|+|++|+|||++|+++++.+....+.. .+. .....+...+......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIA-GSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEE-GGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-ccc-chhhhhcccchhHHHH
Confidence 5789999998777544 4433333346899999999999999999999886443321 111 1111122223333333
Q ss_pred HHHHHHhCcc---------------------c---c-CCC--CCccHHHHHhh---------cCC----ceEEEEeCCCC
Q 046314 261 QVVSLLLGER---------------------I---E-MGG--PNIPAYTLERL---------RRT----KVFFVLDDVSK 300 (1137)
Q Consensus 261 ~ll~~l~~~~---------------------~---~-~~~--~~~~~~l~~~L---------~~k----r~LlVLDdv~~ 300 (1137)
+.+....... . . ..+ ......+++.+ .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 3333211100 0 0 000 01111122111 123 35999999976
Q ss_pred H--HHHHHHhcccCCCCCCCEEEEEeCC------------h-hhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCC
Q 046314 301 F--EQLKYFVGWLHGFCPGSRIVVTTRD------------K-QVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHC 365 (1137)
Q Consensus 301 ~--~~l~~l~~~~~~~~~gsrIIiTTR~------------~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 365 (1137)
. +....|...+..... ..++++|.. . .+.... ......+.+++++.++..+++...+......
T Consensus 201 l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l-~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDL-LDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHH-HTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHH-HhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3 335555544443322 244444431 0 111111 0112268999999999999998876543322
Q ss_pred ChhHHHHHHHHHHHhC-CCchhHHHH
Q 046314 366 PEHLTALSKKAVRYAE-GNPLALEVL 390 (1137)
Q Consensus 366 ~~~~~~l~~~iv~~~~-G~PLal~~l 390 (1137)
-+ .+....+++++. |.|-.+..+
T Consensus 279 ~~--~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 MS--EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp BC--HHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC--HHHHHHHHHHhcCCCHHHHHHH
Confidence 22 455677888887 887655443
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.25 E-value=9e-06 Score=88.07 Aligned_cols=183 Identities=16% Similarity=0.157 Sum_probs=100.3
Q ss_pred CCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 183 SSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
..++++|.+..++++.+++.. +....+.|.|+|++|+|||++|+++++.....| +..+... ....
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~~~~-~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMAGAE-FVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEETTT-TSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEechHH-HHhh
Confidence 346789999888888776531 112345688999999999999999999775432 1112211 1111
Q ss_pred cChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-----------------HHHHHHhcccCCC-
Q 046314 253 VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-----------------EQLKYFVGWLHGF- 314 (1137)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------------~~l~~l~~~~~~~- 314 (1137)
..-. ....+. ..+.......+.+|+||+++.. ..+..++..+...
T Consensus 79 ~~~~--~~~~~~---------------~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 79 IGGL--GAARVR---------------SLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp STTH--HHHHHH---------------HHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred ccCh--hHHHHH---------------HHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 1100 000011 1112222345789999999764 1133443333222
Q ss_pred -CCCCEEEEEeCChhhHHh-h----CCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch-hH
Q 046314 315 -CPGSRIVVTTRDKQVLRK-H----GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL-AL 387 (1137)
Q Consensus 315 -~~gsrIIiTTR~~~v~~~-~----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL-al 387 (1137)
..+..||.||.....+.. . ..+. .+.++.++.++..+++..++........ .......+++.+.|.+- .+
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~--~i~i~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~l 218 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDR--HVFIDLPTLQERREIFEQHLKSLKLTQS-STFYSQRLAELTPGFSGADI 218 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCE--EEECCSCCHHHHHHHHHHHHHHTTCCBT-HHHHHHHHHHTCTTCCHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCe--EEEeCCcCHHHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHCCCCCHHHH
Confidence 234566777765442211 1 2223 7889999999999999887644332222 12234667777777654 34
Q ss_pred HHH
Q 046314 388 EVL 390 (1137)
Q Consensus 388 ~~l 390 (1137)
..+
T Consensus 219 ~~l 221 (262)
T 2qz4_A 219 ANI 221 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 192
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.24 E-value=3.5e-05 Score=86.23 Aligned_cols=184 Identities=15% Similarity=0.116 Sum_probs=104.5
Q ss_pred CCCCCCCccchhhHHHHHHHhhc----------cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchh
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLC----------VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEI 249 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 249 (1137)
+...-++++|.+..+++|.+++. ......+-|.++|++|+|||+||+++++.....| +..+..+..
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~ 88 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLV 88 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHh
Confidence 34445789999999999988772 1112246789999999999999999999865433 211211101
Q ss_pred ccCcC-hHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcccC---
Q 046314 250 ENGVG-LVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLH--- 312 (1137)
Q Consensus 250 s~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~--- 312 (1137)
+...+ .....+.++ ...-..++.+|+||+++.. .....++..+.
T Consensus 89 ~~~~g~~~~~~~~~f-------------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 89 SKWMGESEKLVKQLF-------------------AMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp TTTGGGHHHHHHHHH-------------------HHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred hcccchHHHHHHHHH-------------------HHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence 11110 111111111 1222346789999999642 11233332222
Q ss_pred CCCCCCEEEEEeCChhhHHh---hCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCC-chhHH
Q 046314 313 GFCPGSRIVVTTRDKQVLRK---HGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGN-PLALE 388 (1137)
Q Consensus 313 ~~~~gsrIIiTTR~~~v~~~---~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~-PLal~ 388 (1137)
....+..||.||.....+.. -..+. .+.++..+.++..+++..++.+...... ......+++.+.|. +-.|.
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~Rf~~--~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRRFER--RIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHHCCE--EEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHH
T ss_pred ccCCceEEEEecCChhhCCHHHHcccCe--EEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHH
Confidence 22345566667765432110 12333 7889999999999999988754332211 23446677777763 43444
Q ss_pred HH
Q 046314 389 VL 390 (1137)
Q Consensus 389 ~l 390 (1137)
.+
T Consensus 226 ~l 227 (322)
T 3eie_A 226 VV 227 (322)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.23 E-value=1.7e-05 Score=89.92 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=102.4
Q ss_pred CCCCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhc
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIE 250 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s 250 (1137)
...-++++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +..+..+..+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l~~ 122 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVS 122 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHHHS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHHhh
Confidence 34457799999999999887631 112235688999999999999999999874332 1111111000
Q ss_pred cCcC-hHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH-------------HHHHHhcccC---C
Q 046314 251 NGVG-LVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE-------------QLKYFVGWLH---G 313 (1137)
Q Consensus 251 ~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~---~ 313 (1137)
...+ .....+.+ +......++.+|+||+++... ....++..+. .
T Consensus 123 ~~~g~~~~~~~~~-------------------f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 123 KWMGESEKLVKQL-------------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp CC---CHHHHHHH-------------------HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred hhcchHHHHHHHH-------------------HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence 0000 01111111 111223567899999996531 1233332222 1
Q ss_pred CCCCCEEEEEeCChh-----hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCC-chhH
Q 046314 314 FCPGSRIVVTTRDKQ-----VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGN-PLAL 387 (1137)
Q Consensus 314 ~~~gsrIIiTTR~~~-----v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~-PLal 387 (1137)
...+..||.||.... +.. ..+. .+.++..+.++..+++..++.+...... ......+++.+.|. +-.|
T Consensus 184 ~~~~v~vI~atn~~~~ld~al~r--Rf~~--~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl 257 (355)
T 2qp9_X 184 DSQGVLVLGATNIPWQLDSAIRR--RFER--RIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDI 257 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHH--TCCE--EEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHH
T ss_pred cCCCeEEEeecCCcccCCHHHHc--ccCE--EEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHH
Confidence 234555666776442 222 3434 7899999999999999887644322111 23446677888874 4344
Q ss_pred HHHh
Q 046314 388 EVLG 391 (1137)
Q Consensus 388 ~~lg 391 (1137)
..+.
T Consensus 258 ~~l~ 261 (355)
T 2qp9_X 258 AVVV 261 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 194
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.20 E-value=1.8e-05 Score=88.12 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=89.7
Q ss_pred CccchhhHHHHHHHhhccC-------------CCCeEEEEEEccCCChhhHHHHHHHHHhhccCC--c-eEEEeeccchh
Q 046314 186 GLVGLNSRIECIKSLLCVG-------------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE--G-NCFIENVREEI 249 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~-~~~~~~~~~~~ 249 (1137)
.++|.+..++.|.+++..- ......+.|+|++|+|||++|+++++.+..... . .+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4899999998888765421 233457899999999999999999987644221 1 12222221101
Q ss_pred ccCcChH-HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCC-----------CHHHHHHHhcccCCCCCC
Q 046314 250 ENGVGLV-HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVS-----------KFEQLKYFVGWLHGFCPG 317 (1137)
Q Consensus 250 s~~~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~-----------~~~~l~~l~~~~~~~~~g 317 (1137)
....+.. .....+ +.. .+..+|+||+++ ..+....|...+.....+
T Consensus 112 ~~~~g~~~~~~~~~-------------------~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 112 GQYIGHTAPKTKEV-------------------LKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CSSTTCHHHHHHHH-------------------HHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hhcccccHHHHHHH-------------------HHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 1111100 000111 111 134589999997 444456665555444566
Q ss_pred CEEEEEeCChh----------hHHhhCCCCccEEEEccCCHHHHHHHHHhhccc
Q 046314 318 SRIVVTTRDKQ----------VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFR 361 (1137)
Q Consensus 318 srIIiTTR~~~----------v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~ 361 (1137)
..||.||.... +... .+ ..+++++++.++..+++..++..
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~--~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IA--HHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EE--EEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CC--eEEEcCCcCHHHHHHHHHHHHHH
Confidence 78888886432 2222 11 38999999999999999887643
No 195
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.19 E-value=0.00011 Score=84.43 Aligned_cols=283 Identities=12% Similarity=0.080 Sum_probs=149.6
Q ss_pred cccccccCCCCCCcEEEEecCCCCCccccccCCCCceecCCCCCCCCCCceEEEEecCCCCCCCCCC-cccccceeeccc
Q 046314 544 NLDSRAFTNMSSLRVLKFYIPEGLDMSFEEQHSDSKVQFPDGLDYLPEKLKYLHLHKYPLRTLPENF-KPKNLIELNLPF 622 (1137)
Q Consensus 544 ~l~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~lp~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~ 622 (1137)
.+...+|.++.+|+.+.+.. ....+++..+.-. +|..+.+.. .++.++... ...+|+.+.++.
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~--------------~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAS--------------TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp EECTTTTTTCTTCCEEEECT--------------TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred ChHHHHhhCCCCCCEEEeCC--------------cceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 45678888888888888843 2345555555443 566666643 355555443 444677777765
Q ss_pred CCchhhhhhhhhccccceeEEecCCCCCCCccCCCCCCCcccEeeccCCCCccccCcccc-CCCcCceEeccCCcCcccC
Q 046314 623 SKIVQIWEEKRYVKAFKLKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQ-NFNHLSLLCFQGCKNLRSF 701 (1137)
Q Consensus 623 n~i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~L~~~~~l~~~p~~i~-~L~~L~~L~L~~c~~l~~l 701 (1137)
+ +..+.... +..+ +|+.+.+..+-.......+..+.+|+.+.+..+.........+. +...........|
T Consensus 123 ~-~~~i~~~~-F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 193 (379)
T 4h09_A 123 A-TTEIGNYI-FYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA------ 193 (379)
T ss_dssp T-CCEECTTT-TTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT------
T ss_pred c-cccccccc-cccc-eeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccc------
Confidence 4 23332222 1121 45555554432111111245566666666554322111100000 0000000001111
Q ss_pred CCCCCCCCCceEeccCC-ccCC-CCCcccCCCcEEEecCCCccccCc-cccCCCCCcEEecccccccccccccccCCCCC
Q 046314 702 PSNLHFVSPVNIDCSFC-VNLT-EFPRISGNITKLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSL 778 (1137)
Q Consensus 702 p~~~~l~~L~~L~ls~c-~~l~-~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 778 (1137)
..+..+.+... ..+. .......+++.+.+..+ +..++. .+..+..|+.+.+..+ ....-...+.++.+|
T Consensus 194 ------~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 194 ------KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ------CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ------ccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 11111111110 0000 00011224455554432 444433 3677888888888764 333334567788889
Q ss_pred cEecccccccccccccccCCCCCcceecccCccccccCchhhccccccccccCCCCCCCEEeecCCCCCCcc-cccCCCC
Q 046314 779 IWLCLNECLNLEKSWSELGNLKSFQYIGAHGSTISQLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIP-EEIGCLP 857 (1137)
Q Consensus 779 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~ 857 (1137)
+.+.+..+ ........|.++.+|+.+.+.++.++.++.. .|.++.+|+.+.|..+ ++.+. .++.+++
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----------aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----------VFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTT----------TTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhh----------hhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 98888653 2222345688899999999988877777653 4788999999999754 66665 4688899
Q ss_pred CCCEEEccCCCCCcC
Q 046314 858 SLEWLELRGNNFESL 872 (1137)
Q Consensus 858 ~L~~L~Ls~n~l~~l 872 (1137)
+|+++.+..+ ++.+
T Consensus 334 ~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 334 ALSTISYPKS-ITLI 347 (379)
T ss_dssp TCCCCCCCTT-CCEE
T ss_pred CCCEEEECCc-cCEE
Confidence 9998887543 4443
No 196
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.18 E-value=1.6e-05 Score=92.52 Aligned_cols=180 Identities=14% Similarity=0.222 Sum_probs=105.1
Q ss_pred CCCCCCCccchhhHH---HHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChH
Q 046314 180 SSDSSKGLVGLNSRI---ECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLV 256 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~ 256 (1137)
.|...+++||.+..+ ..+...+..+ ....+.|+|++|+||||+|+.+++.....|.. +. ....+..
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~------a~~~~~~ 89 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS------AVTSGVK 89 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE------TTTCCHH
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE------eccCCHH
Confidence 345567899999888 6777777644 34678999999999999999999987554421 11 1112333
Q ss_pred HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcccCCCCCCCEEEE-EeCChh--hHH
Q 046314 257 HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE--QLKYFVGWLHGFCPGSRIVV-TTRDKQ--VLR 331 (1137)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIi-TTR~~~--v~~ 331 (1137)
.+.. ++.... ......++.+|+||+++... +.+.|+..+.. ....+|. ||.+.. +..
T Consensus 90 ~ir~-~~~~a~---------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 90 EIRE-AIERAR---------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNS 151 (447)
T ss_dssp HHHH-HHHHHH---------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCH
T ss_pred HHHH-HHHHHH---------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCH
Confidence 2222 221111 11224678899999997643 33444433332 2233443 555542 111
Q ss_pred hhCCCCccEEEEccCCHHHHHHHHHhhcccCC-----CCChhHHHHHHHHHHHhCCCchhHHH
Q 046314 332 KHGVNDEYVYEVERLNEDEGLELFYKYAFRQS-----HCPEHLTALSKKAVRYAEGNPLALEV 389 (1137)
Q Consensus 332 ~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~l~~~iv~~~~G~PLal~~ 389 (1137)
.. .....++.+++++.++..+++...+.... ....-..+....++++++|.+-.+.-
T Consensus 152 aL-~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 152 AL-LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HH-HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred HH-hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 11 11123789999999999999887754311 11111245667788889998854443
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.17 E-value=2.3e-05 Score=87.87 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=97.8
Q ss_pred CCCCcc-chhh--HHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHH
Q 046314 183 SSKGLV-GLNS--RIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLH 259 (1137)
Q Consensus 183 ~~~~~v-Gr~~--~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~ 259 (1137)
..++|| |... ....+..+..........+.|+|++|+||||||+.+++.+...-...+++. . ..+.
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~~ 77 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDFA 77 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHHH
Confidence 445676 5433 233445544433224567899999999999999999998754422233332 1 1122
Q ss_pred HHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH----HHHHHhcccCC-CCCCCEEEEEeCCh-------
Q 046314 260 KQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE----QLKYFVGWLHG-FCPGSRIVVTTRDK------- 327 (1137)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~------- 327 (1137)
..+...+... ....+...+. +..+|+|||++... ..+.+...+.. ...|.+||+||...
T Consensus 78 ~~~~~~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 78 QAMVEHLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 2222222110 1112233333 36789999996532 22222222111 12466788887532
Q ss_pred --hhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 328 --QVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 328 --~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
.+...+.... ++++++ +.++..+++...+......-+ .+....+++++ |..-.
T Consensus 149 ~~~L~sR~~~~~--~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 149 SDRLVSRFEGGI--LVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CHHHHHHHHTSE--EEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHHH
T ss_pred hhHhhhcccCce--EEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHHH
Confidence 1222222222 799999 999999999888753322222 45566778888 77643
No 198
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=8.3e-07 Score=100.62 Aligned_cols=140 Identities=13% Similarity=0.147 Sum_probs=82.6
Q ss_pred cCccccCCCCCcEEecccccccccccccccCCCCCcEecccccccccccccccC--CCCCcceecccCc--cccccCchh
Q 046314 744 VPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLEKSWSELG--NLKSFQYIGAHGS--TISQLPHLL 819 (1137)
Q Consensus 744 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~l~~n--~i~~lp~~l 819 (1137)
++..+..+|+|+.|+|++|... .++. + .+++|++|+|..|.........+. .+++|+.|+|+.+ ....- ..+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~-~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD-GDM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC-SCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc-hhH
Confidence 4444677889999999887432 2333 3 378899999988776554444443 6888888887532 11100 001
Q ss_pred hccccccccccCCCCCCCEEeecCCCCCC-ccccc---CCCCCCCEEEccCCCCCcC-----C-CCCCcccccceecccc
Q 046314 820 SHLVSLHASLLSGLSSLNWLNLNNCALTA-IPEEI---GCLPSLEWLELRGNNFESL-----P-SIPELPPSLKWLQASN 889 (1137)
Q Consensus 820 ~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l---~~l~~L~~L~Ls~n~l~~l-----p-~~~~l~~~L~~L~l~~ 889 (1137)
..+..+ .....+++|++|+|++|.+.+ .+..+ ..+++|++|+|+.|.+... + .+..++ +|+.|+|++
T Consensus 240 ~~l~~~--l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-~L~~L~L~~ 316 (362)
T 2ra8_A 240 NVFRPL--FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-HLKFINMKY 316 (362)
T ss_dssp GGTGGG--SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-TCSEEECCS
T ss_pred HHHHHH--HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-cceEEECCC
Confidence 111111 111357889999998888774 22222 3577888888888877652 2 223344 566666655
Q ss_pred c
Q 046314 890 C 890 (1137)
Q Consensus 890 c 890 (1137)
|
T Consensus 317 n 317 (362)
T 2ra8_A 317 N 317 (362)
T ss_dssp B
T ss_pred C
Confidence 5
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.12 E-value=3.2e-05 Score=90.45 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=104.9
Q ss_pred CCCCCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchh
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEI 249 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 249 (1137)
+....++++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.... ..++..+..+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~-- 203 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD-- 203 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH--
Confidence 444557899999999999887631 1123467899999999999999999998621 1111111111
Q ss_pred ccCcChHHHHHHHHHHHhCccccCCCCCccHHH-HHhhcCCceEEEEeCCCCH-------------HHHHHHhcccCCC-
Q 046314 250 ENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYT-LERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLHGF- 314 (1137)
Q Consensus 250 s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~- 314 (1137)
+.....+ .....+..+ ...-..++.+|+||+++.. .....++..+...
T Consensus 204 ------------l~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 204 ------------LVSKWLG-----ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp -------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred ------------HHhhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 0000000 011112222 2222356789999999754 2244455444332
Q ss_pred --CCCCEEEEEeCChhhHHh---hCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCC-chhHH
Q 046314 315 --CPGSRIVVTTRDKQVLRK---HGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGN-PLALE 388 (1137)
Q Consensus 315 --~~gsrIIiTTR~~~v~~~---~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~-PLal~ 388 (1137)
..+..||.||.....+.. -..+. .+.++..+.++..+++..++.+...... ......+++.+.|. +-.|.
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~--~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~ 342 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEK--RIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYSGADIS 342 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCE--EEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCCHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcce--EEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHH
Confidence 345666767765432111 12333 7889999999999999887643321111 23346677888874 33444
Q ss_pred HH
Q 046314 389 VL 390 (1137)
Q Consensus 389 ~l 390 (1137)
.+
T Consensus 343 ~l 344 (444)
T 2zan_A 343 II 344 (444)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 200
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.11 E-value=3.1e-05 Score=86.42 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=102.3
Q ss_pred CCCCCCccchhhHHHHHHHhhcc---------C-CCCeEEEEEEccCCChhhHHHHHHHHHh-hccCCceEEEeeccchh
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCV---------G-FPDVRIVGIWGMGGIGKTTLAKALFNQV-SNEFEGNCFIENVREEI 249 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~~~~~~~ 249 (1137)
...-++++|.+..+++|.+.+.. + ....+.|.++|++|+|||+||+++++.. ...| +..+..+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~----~~i~~~~l~ 83 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF----FSISSSDLV 83 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE----EEEECCSSC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE----EEEEhHHHH
Confidence 33457789999988888876531 1 1234678999999999999999999986 2222 211111101
Q ss_pred ccCcC-hHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcccCC--
Q 046314 250 ENGVG-LVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLHG-- 313 (1137)
Q Consensus 250 s~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~-- 313 (1137)
+...+ .....+.++ ...-..++.+|+||+++.. .....++..+..
T Consensus 84 ~~~~g~~~~~~~~lf-------------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 84 SKWLGESEKLVKNLF-------------------QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp CSSCCSCHHHHHHHH-------------------HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred hhhhhHHHHHHHHHH-------------------HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence 11001 111111111 1112356789999999654 112333332222
Q ss_pred -CCCCCEEEEEeCChh-----hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc-hh
Q 046314 314 -FCPGSRIVVTTRDKQ-----VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP-LA 386 (1137)
Q Consensus 314 -~~~gsrIIiTTR~~~-----v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P-La 386 (1137)
...+..||.||.... +.. ..+. .+.++..+.++..+++..++.+...... ......+++.+.|.. -.
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~r--Rf~~--~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgad 218 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRR--RFEK--RIYIPLPEPHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGAD 218 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHH--TCCE--EEECCCCCHHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHH
T ss_pred ccCCCEEEEEecCCcccCCHHHHh--hcCe--EEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHH
Confidence 224445565665432 222 3333 7899999999999999887643322111 234567778888763 33
Q ss_pred HHHHh
Q 046314 387 LEVLG 391 (1137)
Q Consensus 387 l~~lg 391 (1137)
|..+.
T Consensus 219 l~~l~ 223 (322)
T 1xwi_A 219 ISIIV 223 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 201
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.11 E-value=0.00012 Score=84.43 Aligned_cols=117 Identities=10% Similarity=0.109 Sum_probs=64.8
Q ss_pred CceEEEEecCCCCCCCCCC--cccccceeecccCC---chhhhhhhhhccccceeEEecCCCCCCCccCC--CCCCCccc
Q 046314 592 KLKYLHLHKYPLRTLPENF--KPKNLIELNLPFSK---IVQIWEEKRYVKAFKLKSINLSHSQYLIRIPD--PSETPSLE 664 (1137)
Q Consensus 592 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~---i~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~~~l~~L~ 664 (1137)
.|+.+.+.. .++.+.... ++.+|+.+.+..+. ++.+.. ..+..|.+|+.+.+..+ ...++. |..+.+|+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~-~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGR-QAFMFCSELTDIPILDS--VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECT-TTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCC
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEech-hhchhcccceeeccCCc--cceehhhhhhhhcccc
Confidence 477777754 366665543 67788888776653 444432 23445557777666554 233333 56777777
Q ss_pred EeeccCCCCccccCccccCCCcCceEeccCCcCcccCCCCC-CCCCCceEec
Q 046314 665 RINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLRSFPSNL-HFVSPVNIDC 715 (1137)
Q Consensus 665 ~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~l 715 (1137)
.+.+... ....-...+..+.+|+.+.+.++ +..+.... ....|+.+.+
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~i 189 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHI 189 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEE
T ss_pred cccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEE
Confidence 7777542 22222345666777777776542 33333322 2334555544
No 202
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.11 E-value=6.6e-06 Score=92.35 Aligned_cols=176 Identities=13% Similarity=0.159 Sum_probs=103.0
Q ss_pred CCCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHH
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLH 259 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~ 259 (1137)
.|...++++|.+..++.+..++..+. ...++.+.|++|+|||++|+++++.+... .+.+. .+ ..+...+.
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-----~~-~~~~~~i~ 90 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-----GS-DCKIDFVR 90 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-----TT-TCCHHHHH
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-----cc-ccCHHHHH
Confidence 34556889999999999999987442 34567888889999999999999887422 12222 11 12222222
Q ss_pred HHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH---HHHHHhcccCCCCCCCEEEEEeCChh-----hHH
Q 046314 260 KQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE---QLKYFVGWLHGFCPGSRIVVTTRDKQ-----VLR 331 (1137)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~l~~l~~~~~~~~~gsrIIiTTR~~~-----v~~ 331 (1137)
. .+...... ....+++.++|+|+++... +.+.|...+.....+.++|+||.... +..
T Consensus 91 ~-~~~~~~~~--------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 91 G-PLTNFASA--------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp T-HHHHHHHB--------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred H-HHHHHHhh--------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 2 22211100 0012367899999998753 34444443333335678888887644 222
Q ss_pred hhCCCCccEEEEccCCHHHHHHHH-------HhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 332 KHGVNDEYVYEVERLNEDEGLELF-------YKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 332 ~~~~~~~~~~~v~~L~~~ea~~Lf-------~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
.+ ..+++++++.++-.+++ ...+.......+. .+....++++++|.+-.
T Consensus 156 R~-----~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 156 RC-----RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HS-----EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTH
T ss_pred hC-----cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHH
Confidence 21 27999999988843332 2222211111110 25566778888887753
No 203
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.10 E-value=1.3e-05 Score=81.64 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 183 SSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
..++++||+.+++++.+.+.. ...+.+.|+|++|+|||++|+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999998864 23456789999999999999999998754
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.03 E-value=5.5e-05 Score=87.05 Aligned_cols=185 Identities=17% Similarity=0.114 Sum_probs=101.4
Q ss_pred CCCCCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchh
Q 046314 180 SSDSSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEI 249 (1137)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 249 (1137)
.+...++++|.+..++.|.+++.. .....+.|.|+|.+|+|||+||++++++....| +..+.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhh
Confidence 344557899999999999987731 012246789999999999999999988754322 222221100
Q ss_pred ccCc-ChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcccC---
Q 046314 250 ENGV-GLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLH--- 312 (1137)
Q Consensus 250 s~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~--- 312 (1137)
.... ........++ ...-..++.+|+||+++.. .....++..+.
T Consensus 186 ~~~~g~~~~~~~~~~-------------------~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 186 SKYVGEGEKLVRALF-------------------AVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp ------CHHHHHHHH-------------------HHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHH-------------------HHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 0000 0011111111 1112345679999999643 11222222111
Q ss_pred C-CCCCCEEEEEeCChhhHH-h--hCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCch-hH
Q 046314 313 G-FCPGSRIVVTTRDKQVLR-K--HGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPL-AL 387 (1137)
Q Consensus 313 ~-~~~gsrIIiTTR~~~v~~-~--~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PL-al 387 (1137)
. ......||.||.....+. . -.... .+.++..+.++..+++...+........ .+....+++.+.|..- ++
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~--~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l 322 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIK--RVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDL 322 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCE--EEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcce--EEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHH
Confidence 1 123345565665433211 1 12222 6889999999999999877644322222 3455678888888544 55
Q ss_pred HHHh
Q 046314 388 EVLG 391 (1137)
Q Consensus 388 ~~lg 391 (1137)
..+.
T Consensus 323 ~~L~ 326 (389)
T 3vfd_A 323 TALA 326 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.97 E-value=4.5e-05 Score=84.34 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=91.0
Q ss_pred CCCCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhc
Q 046314 182 DSSKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIE 250 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s 250 (1137)
..-++++|.+..+++|.+++.. +-...+.|.|+|++|+|||+||+++++.....| +.+. .
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-~----- 82 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-G----- 82 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-H-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-h-----
Confidence 3446799999998888877642 223456789999999999999999998764322 1111 1
Q ss_pred cCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcccCCC
Q 046314 251 NGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE----------------QLKYFVGWLHGF 314 (1137)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~ 314 (1137)
..+ .....+.. .......+.......+.+|++|+++... ....++..+...
T Consensus 83 -----~~l----~~~~~g~~----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 83 -----PEL----LTMWFGES----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp -----HHH----HHHHHTTC----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred -----HHH----HhhhcCch----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 111 11221111 1111122233334567899999997421 123333322211
Q ss_pred --CCCCEEEEEeCChhhHHh--h---CCCCccEEEEccCCHHHHHHHHHhhcc
Q 046314 315 --CPGSRIVVTTRDKQVLRK--H---GVNDEYVYEVERLNEDEGLELFYKYAF 360 (1137)
Q Consensus 315 --~~gsrIIiTTR~~~v~~~--~---~~~~~~~~~v~~L~~~ea~~Lf~~~a~ 360 (1137)
..+..||.||.....+.. . ..+. .+.++.++.++-.+++..+..
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~--~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQ--LIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccce--EEecCCcCHHHHHHHHHHHHc
Confidence 235567777765532211 1 2333 789999999999998877663
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.94 E-value=0.00041 Score=77.79 Aligned_cols=267 Identities=15% Similarity=0.146 Sum_probs=136.5
Q ss_pred CCCCCCccchhhHHHHHHHhhccC---CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHH
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVG---FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
+..-+.++|.+..++.+...+..+ ......++++|++|+||||||+.++..+...|.. .. .. + ......
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~---~s--g~-~--~~~~~~ 92 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV---TS--GP-V--LVKQGD 92 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE---EE--TT-T--CCSHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE---Ee--ch-H--hcCHHH
Confidence 334567899988888887776532 2234679999999999999999999987543321 11 00 0 001111
Q ss_pred HHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCCC--------C----------CC
Q 046314 258 LHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHGF--------C----------PG 317 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~--------~----------~g 317 (1137)
+. .+ ...+ .++-++++|+++.. ...+.+....... + +.
T Consensus 93 l~-~~--------------------~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 93 MA-AI--------------------LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp HH-HH--------------------HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred HH-HH--------------------HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 11 00 1111 23446778887542 2233332211111 0 11
Q ss_pred CEEE-EEeCChhhHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHhhhh--
Q 046314 318 SRIV-VTTRDKQVLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLGSSL-- 394 (1137)
Q Consensus 318 srII-iTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg~~L-- 394 (1137)
..++ .|++...+.....-.-...+.+++.+.++-.+++.+.+-......+ .+.+..|++.+.|.|-.+.-+...+
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~--~~~~~~ia~~~~G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE--DAAAEMIAKRSRGTPRIAIRLTKRVRD 228 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC--HHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 1222 3444333211111111126899999999999999887633222211 4567888999999996443332221
Q ss_pred ----ccC---CHHHHHHHHHHHhccCCcccHHHHHHHhhccCChhhHhHhhhcccccCC--cCHHHHHHHHhhcCCchhH
Q 046314 395 ----HQK---SKLDWENVLDNLKQISGVSRIYNVLRISYEELSFEEKSTFLDIACFFKG--ECKDRVLMLLHDRQYNVTH 465 (1137)
Q Consensus 395 ----~~~---~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~~~~~~~ 465 (1137)
.+. +.+.-+.+++.+. ....+|+...+..+..++-.+++ ...+.+...........+.
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~-------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~ 295 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLN-------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSE 295 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHT-------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC-------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHH
Confidence 111 2222233333221 11235566665555544433333 2334455444332212233
Q ss_pred HHH-HHHhccCceee-CCeEEehHHHHHH
Q 046314 466 VLS-ILIDKSLITEH-NNRLHMHELLQEM 492 (1137)
Q Consensus 466 ~l~-~L~~~sLi~~~-~~~~~mHdll~~~ 492 (1137)
.++ .|...++|+.. .+++....-.+.+
T Consensus 296 ~~~~~l~~~g~i~~~~~gr~~~~~~~~~~ 324 (334)
T 1in4_A 296 VYEPYLLQAGFLARTPRGRIVTEKAYKHL 324 (334)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHT
T ss_pred HHHHHHHHcCCeecccccHHhhHHHHHHh
Confidence 333 78889999887 5665554433333
No 207
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.94 E-value=5.8e-05 Score=84.81 Aligned_cols=174 Identities=14% Similarity=0.074 Sum_probs=102.1
Q ss_pred hhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCC---------------------ceEEEeeccchh
Q 046314 191 NSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE---------------------GNCFIENVREEI 249 (1137)
Q Consensus 191 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~~~~~~~~~~~ 249 (1137)
+...+.+...+..+ .-.+.+.++|++|+|||++|+.+++.+..... ...++. ..+ .
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~-~ 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEK-G 84 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCT-T
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-ccc-c
Confidence 34455666666433 22457889999999999999999997643321 111111 000 0
Q ss_pred ccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCCh
Q 046314 250 ENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDK 327 (1137)
Q Consensus 250 s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~ 327 (1137)
+...+...+ +++...+... -..+++-++|+|+++. .+..+.|+..+....++..+|++|.+.
T Consensus 85 ~~~~~i~~i-r~l~~~~~~~---------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 85 KNTLGVDAV-REVTEKLNEH---------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp CSSBCHHHH-HHHHHHTTSC---------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCCHHHH-HHHHHHHhhc---------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 011122211 1111111100 0124567899999976 344666766666555677777777665
Q ss_pred h-hHHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchhHHHHh
Q 046314 328 Q-VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEVLG 391 (1137)
Q Consensus 328 ~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~lg 391 (1137)
+ +..... .....+++++++.++..+++...+ ... .+.+..+++.++|.|..+..+.
T Consensus 149 ~~l~~ti~-SRc~~~~~~~~~~~~~~~~L~~~~----~~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 149 ERLLATLR-SRCRLHYLAPPPEQYAVTWLSREV----TMS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHC----CCC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred HhCcHHHh-hcceeeeCCCCCHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 3 332221 122389999999999999998875 111 3445778999999997665443
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=9.4e-05 Score=83.42 Aligned_cols=183 Identities=11% Similarity=0.148 Sum_probs=105.0
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEEeeccchhccCcChHHHH
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFIENVREEIENGVGLVHLH 259 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~s~~~~~~~l~ 259 (1137)
|...++++|.+..++.|...+..+ +...+.++|++|+||||+|+.++..+... +...+.-.+ .+...+...+.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~~ir 94 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGIDVVR 94 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHHHHH
Confidence 344567899999999998888644 33338999999999999999999976432 221111111 12222332222
Q ss_pred HHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCChh-hHHhhCCC
Q 046314 260 KQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDKQ-VLRKHGVN 336 (1137)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~ 336 (1137)
. .+..+..... .+.+.+-++|+|+++. .+..+.|...+.......++|++|.... +..... .
T Consensus 95 ~-~i~~~~~~~~-------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~-s 159 (340)
T 1sxj_C 95 N-QIKDFASTRQ-------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL-S 159 (340)
T ss_dssp T-HHHHHHHBCC-------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-T
T ss_pred H-HHHHHHhhcc-------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH-h
Confidence 2 1211110000 0123467889999864 3334444443333345667777775443 211111 1
Q ss_pred CccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCchh
Q 046314 337 DEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNPLA 386 (1137)
Q Consensus 337 ~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLa 386 (1137)
....+.+.+++.++..+.+...+-.....-+ .+..+.+++.++|.+--
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~--~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKLS--PNAEKALIELSNGDMRR 207 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCCBC--HHHHHHHHHHHTTCHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 1227899999999988888766532221111 34567788899998863
No 209
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.81 E-value=2.8e-05 Score=75.72 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=36.2
Q ss_pred CccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 186 GLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988775322233457899999999999999998864
No 210
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00045 Score=77.87 Aligned_cols=172 Identities=18% Similarity=0.260 Sum_probs=102.4
Q ss_pred CCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
-+++.|.+..+++|.+.+.. +-.-++-|.++|++|.|||.||+++++.....|- ..+..+..+..
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~----~v~~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI----RVSGAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE----EEEGGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce----EEEhHHhhccc
Confidence 36788999999999886642 2334677999999999999999999998765542 22222212222
Q ss_pred cCh-HHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcccCCCC
Q 046314 253 VGL-VHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWLHGFC 315 (1137)
Q Consensus 253 ~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 315 (1137)
.+- ....++++. ..-...+++|++|+++.. ..+..++..+..+.
T Consensus 223 vGese~~vr~lF~-------------------~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 223 IGEGSRMVRELFV-------------------MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp TTHHHHHHHHHHH-------------------HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHH-------------------HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 221 122222221 222456889999998532 11344444444333
Q ss_pred --CCCEEEEEeCChhh-----HHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCCc
Q 046314 316 --PGSRIVVTTRDKQV-----LRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 316 --~gsrIIiTTR~~~v-----~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~P 384 (1137)
.+-.||.||-..+. .+.-..+. .++++..+.++-.++|..+.-+..... -++ .++++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~--~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDR--KIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCC--EEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCce--EEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 33345666654432 22123455 899999999999999988764432221 233 44566676653
No 211
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.73 E-value=6.2e-05 Score=95.72 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=42.8
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
+...+.+|||+.++.++...+... ..+.+.++|.+|+||||+|+.+++++..
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345578999999999999988643 2345789999999999999999998744
No 212
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.70 E-value=0.0002 Score=79.62 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=39.9
Q ss_pred CCccchhhHHHHHHHhhccCC------C-CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 185 KGLVGLNSRIECIKSLLCVGF------P-DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~------~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
..++|.+..++.+...+.... . ....+.++|++|+|||++|+.++......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 358899999888888775321 1 13589999999999999999999977543
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.68 E-value=0.00041 Score=81.60 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=83.1
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC-----CceEEEeeccchhccCcCh
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF-----EGNCFIENVREEIENGVGL 255 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~~~~~s~~~~~ 255 (1137)
+...+.+|||+.+++.+...+... ...-+.|+|.+|+|||++|+.++..+...+ ...-++. +.. +
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~-----l~~--~- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT-----LDM--G- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC-----C------
T ss_pred cCCCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-----eeC--C-
Confidence 344567999999999999998643 233567999999999999999999875432 1111221 100 0
Q ss_pred HHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhHHhhCC
Q 046314 256 VHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKHGV 335 (1137)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 335 (1137)
.... ..........+...-..++.+|++| ...+....|...+. ...-++|.||...........
T Consensus 246 --------~~~~----g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 --------TKYR----GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred --------cccc----chHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 0000 0000111111222223567889999 22222333443332 223556665554431111111
Q ss_pred C-----CccEEEEccCCHHHHHHHHHhhc
Q 046314 336 N-----DEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 336 ~-----~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
+ ...++.++.++.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1 12379999999999999998765
No 214
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.64 E-value=0.00025 Score=76.41 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=83.5
Q ss_pred CCCCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhc
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIE 250 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s 250 (1137)
....++++|.+..++++.+++.. +..-.+-|.|+|++|+||||||+++++.....| +.+. ... ..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~-~~ 82 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD-FV 82 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCS-ST
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHH-HH
Confidence 34557799999888887765431 011234588999999999999999998764332 2221 111 10
Q ss_pred cC-cC-hHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcccC
Q 046314 251 NG-VG-LVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWLH 312 (1137)
Q Consensus 251 ~~-~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~ 312 (1137)
.. .+ ...... ..+.......+.++++|+++.. ..+..++..+.
T Consensus 83 ~~~~~~~~~~~~-------------------~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (257)
T 1lv7_A 83 EMFVGVGASRVR-------------------DMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 143 (257)
T ss_dssp TSCCCCCHHHHH-------------------HHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHH-------------------HHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh
Confidence 00 00 000001 1112222345678999998321 12333433222
Q ss_pred CC--CCCCEEEEEeCChhhH-Hhh----CCCCccEEEEccCCHHHHHHHHHhhc
Q 046314 313 GF--CPGSRIVVTTRDKQVL-RKH----GVNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 313 ~~--~~gsrIIiTTR~~~v~-~~~----~~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
.. ..+..||.||...... ... ..+. .+.++..+.++-.+++..+.
T Consensus 144 ~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~--~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 144 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDR--QVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp TCCSSSCEEEEEEESCTTTSCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHH
T ss_pred CcccCCCEEEEEeeCCchhCCHHHcCCCcCCe--EEEeCCCCHHHHHHHHHHHH
Confidence 11 2345567777654322 111 1233 78888888888888887665
No 215
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=1.7e-05 Score=80.82 Aligned_cols=117 Identities=12% Similarity=-0.016 Sum_probs=70.0
Q ss_pred cccCCCCCcEEecccc-cccc----cccccccCCCCCcEecccccccccc----cccccCCCCCcceecccCccccccCc
Q 046314 747 SVECLTNLEYLYINRC-KRLK----RVSTSICKLKSLIWLCLNECLNLEK----SWSELGNLKSFQYIGAHGSTISQLPH 817 (1137)
Q Consensus 747 ~i~~l~~L~~L~L~~~-~~l~----~lp~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~n~i~~lp~ 817 (1137)
.+...++|++|+|++| .+.. .+...+...++|++|+|++|..... +...+...++|+.|+|++|.|..-..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3556677777777777 5432 2334455667777777777765432 23344455667777777776653110
Q ss_pred -hhhccccccccccCCCCCCCEEee--cCCCCCC-----cccccCCCCCCCEEEccCCCCC
Q 046314 818 -LLSHLVSLHASLLSGLSSLNWLNL--NNCALTA-----IPEEIGCLPSLEWLELRGNNFE 870 (1137)
Q Consensus 818 -~l~~l~~L~~~~l~~l~~L~~L~L--s~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 870 (1137)
.+. ..+...++|++|+| ++|.+.+ +...+...++|++|+|++|.+.
T Consensus 111 ~~l~-------~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALV-------EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHH-------HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHH-------HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 000 01334567777888 6677764 4455566677888888777654
No 216
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.62 E-value=0.00012 Score=74.14 Aligned_cols=50 Identities=20% Similarity=0.158 Sum_probs=34.0
Q ss_pred CCCccc----hhhHHHHHHHhhccCC-CCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 184 SKGLVG----LNSRIECIKSLLCVGF-PDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 184 ~~~~vG----r~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+++++ ....++.+.+++..-. ...+.++|+|++|+||||||+.++..+.
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345554 3444444554443211 2356899999999999999999999875
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00098 Score=76.11 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=100.2
Q ss_pred CCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
-+++.|.+..+++|.+.+.. +-.-++-|.++|++|.|||+||++++++....|- ..+..+..+..
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi----~vs~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI----RVIGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE----EEEGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE----EEEhHHhhccc
Confidence 36789999999999876532 3345678999999999999999999998765442 22222212222
Q ss_pred cChH-HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcccCCCC
Q 046314 253 VGLV-HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWLHGFC 315 (1137)
Q Consensus 253 ~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 315 (1137)
.+-. ...+.++ ...-...+++|++|+++.. ..+..++..+..+.
T Consensus 284 vGesek~ir~lF-------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 284 VGEGARMVRELF-------------------EMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp SSHHHHHHHHHH-------------------HHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHH-------------------HHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 2221 2222222 2222456899999998532 11223333333332
Q ss_pred --CCCEEEEEeCChhh-----HHhhCCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCC
Q 046314 316 --PGSRIVVTTRDKQV-----LRKHGVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGN 383 (1137)
Q Consensus 316 --~gsrIIiTTR~~~v-----~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~ 383 (1137)
.+-.||.||-.... .+.-..+. .++++..+.++-.++|..+..+..... -++ ..+++.+.|.
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~--~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDR--KVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCE--EECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccE--EEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 23344556644332 21113455 899999999999999987764432221 123 3456667664
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.59 E-value=0.00038 Score=81.83 Aligned_cols=154 Identities=15% Similarity=0.197 Sum_probs=89.2
Q ss_pred CCCccchhhHHHHHHHhhccC-----------CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCVG-----------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
.++++|.+..+++|.+++... ....+-|.|+|.+|+|||++|++++++....| +..+..+..+..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchHhhhhh
Confidence 357999999999998887532 33456789999999999999999988763222 222222211111
Q ss_pred cChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcccCC--CCCC
Q 046314 253 VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLHG--FCPG 317 (1137)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~--~~~g 317 (1137)
.+-. ... ....+.....+++.+|+||+++.. .....|+..+.. ...+
T Consensus 279 ~g~~--~~~----------------~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 279 AGES--ESN----------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp TTHH--HHH----------------HHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred cchh--HHH----------------HHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1110 000 011123333456789999998311 112233322221 1234
Q ss_pred CEEEEEeCChhhH-Hh----hCCCCccEEEEccCCHHHHHHHHHhhccc
Q 046314 318 SRIVVTTRDKQVL-RK----HGVNDEYVYEVERLNEDEGLELFYKYAFR 361 (1137)
Q Consensus 318 srIIiTTR~~~v~-~~----~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~ 361 (1137)
.+||.||.....+ .. ..... .+.++..+.++-.+++..++..
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~--~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDR--EVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHTTT
T ss_pred eEEEEecCCccccCHHHhCCCcCce--EEEeCCCCHHHHHHHHHHHHhc
Confidence 4566677654321 11 12333 7899999999999999887643
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00077 Score=77.23 Aligned_cols=171 Identities=20% Similarity=0.320 Sum_probs=100.9
Q ss_pred CCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
-+++.|.+..+++|.+.+.. +-.-++-|.++|++|.|||+||+++++.....| +..+..+..+..
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcccc
Confidence 46788999999998876642 223467899999999999999999999876543 222222212222
Q ss_pred cChH-HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcccCCCC
Q 046314 253 VGLV-HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWLHGFC 315 (1137)
Q Consensus 253 ~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 315 (1137)
.+-. ...+.++ ...-...+++|++|+++.. ..+..|+..+..+.
T Consensus 256 ~Gese~~ir~~F-------------------~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 256 IGESARIIREMF-------------------AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SSHHHHHHHHHH-------------------HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred chHHHHHHHHHH-------------------HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 2211 2222221 2222457899999998531 11334444443222
Q ss_pred --CCCEEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhcccCCCC-ChhHHHHHHHHHHHhCCC
Q 046314 316 --PGSRIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYAFRQSHC-PEHLTALSKKAVRYAEGN 383 (1137)
Q Consensus 316 --~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~G~ 383 (1137)
.+..||.||-....+... ..+. .++++..+.++-.++|..+..+.... ..++ ..+++.+.|.
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~--~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~ 386 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDR--KVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGF 386 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEE--EECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccce--eeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCC
Confidence 345677777655433221 1233 78899999999999998776443221 2223 3455666664
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.54 E-value=0.00038 Score=77.13 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=38.7
Q ss_pred CCccchhhHHHHHHHhhcc------------CCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 185 KGLVGLNSRIECIKSLLCV------------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
+.++|.+..++.+...+.. .......+.++|.+|+|||++|+.+++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3589999988888877643 0122456889999999999999999988743
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.52 E-value=0.00022 Score=77.23 Aligned_cols=50 Identities=24% Similarity=0.174 Sum_probs=35.2
Q ss_pred CCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 184 SKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.++++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35689999999888776643222235678999999999999999998654
No 222
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.50 E-value=9.3e-05 Score=76.52 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=40.8
Q ss_pred CCCCccchhh----HHHHHHHhhccCCC--CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 183 SSKGLVGLNS----RIECIKSLLCVGFP--DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 183 ~~~~~vGr~~----~~~~l~~~L~~~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
..++|++.+. .++.+.+++..... ..+.+.|+|++|+|||+||+++++....+...++++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4466776543 34445555543322 1267899999999999999999998866555555554
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.50 E-value=0.001 Score=77.53 Aligned_cols=175 Identities=16% Similarity=0.163 Sum_probs=97.4
Q ss_pred CCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 183 SSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
..++++|.+..++++.+.... +..-.+-|.|+|++|.|||+||++++.+....| +..+..+.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHH
Confidence 346789999888887776531 111234588999999999999999999764333 222222211111
Q ss_pred cChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcccCCC--
Q 046314 253 VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWLHGF-- 314 (1137)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~-- 314 (1137)
.+... +- ....+.......+.+|+||+++.. ..+..++..+..+
T Consensus 90 ~g~~~---~~---------------~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 90 VGVGA---AR---------------VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp TTHHH---HH---------------HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred hcccH---HH---------------HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 11100 00 011123333467889999998441 1234444333222
Q ss_pred CCCCEEEEEeCChhhHHh--h---CCCCccEEEEccCCHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHhCCCc
Q 046314 315 CPGSRIVVTTRDKQVLRK--H---GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 315 ~~gsrIIiTTR~~~v~~~--~---~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G~P 384 (1137)
..+..||.||...+.+.. . ..+. .+.++..+.++-.+++..++.+.....+. + ...+++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~--~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~-l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDK--KIVVDPPDMLGRKKILEIHTRNKPLAEDV--N-LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHHTTSCBCTTC--C-HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCccee--EeecCCCCHHHHHHHHHHHHHhCCCcchh--h-HHHHHHhcCCCc
Confidence 235567777766543321 1 2333 78899999888888887766433221111 1 234667777776
No 224
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00076 Score=77.24 Aligned_cols=172 Identities=17% Similarity=0.236 Sum_probs=100.4
Q ss_pred CCCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhcc
Q 046314 183 SSKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIEN 251 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~ 251 (1137)
.-+++.|.+..+++|.+.+.. +-.-++-|.++|++|.|||.||+++++.....| +..+..+-.+.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhc
Confidence 347789999999998876431 223467899999999999999999999876543 22222221222
Q ss_pred CcChH-HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------H---HHHHHhcccCCC
Q 046314 252 GVGLV-HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------E---QLKYFVGWLHGF 314 (1137)
Q Consensus 252 ~~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~---~l~~l~~~~~~~ 314 (1137)
..+-. ...+.++. ..-...+++|++|+++.. . .+..++..+..+
T Consensus 255 ~vGese~~ir~lF~-------------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 255 YIGEGAKLVRDAFA-------------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CSSHHHHHHHHHHH-------------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHH-------------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 22221 22222221 112345789999998321 1 133455555444
Q ss_pred C--CCCEEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCC
Q 046314 315 C--PGSRIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGN 383 (1137)
Q Consensus 315 ~--~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~ 383 (1137)
. .+-.||.||-..+.+... ..+. .++++..+.++..++|..+..+..... -++ .++++.+.|.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~--~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDR--KIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEE--EEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeE--EEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 3 233455577655432221 2333 789999999999999987764332211 123 3456666664
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.45 E-value=6.8e-05 Score=81.43 Aligned_cols=155 Identities=16% Similarity=0.211 Sum_probs=85.5
Q ss_pred CCCCCCccchhhHHHHHHHhhcc----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhc
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCV----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIE 250 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s 250 (1137)
....++++|.+..++++.+.+.. +....+-|.|+|++|+|||+||++++++....|-. + +... ..
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~-~~ 81 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSS-FI 81 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCT-TT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHH-HH
Confidence 34457899999888888876641 11123347899999999999999999987544321 1 1111 00
Q ss_pred cCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHH-----------------HHHHHhcccCC
Q 046314 251 NGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFE-----------------QLKYFVGWLHG 313 (1137)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----------------~l~~l~~~~~~ 313 (1137)
.. ..+ .........+......++.+|+||+++... .+..++..+..
T Consensus 82 ~~-------------~~~----~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 82 EM-------------FVG----LGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp TS-------------CSS----SCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred Hh-------------hcc----hHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 00 000 011111122233334567899999995431 12233333322
Q ss_pred CC---CCCEEEEEeCChhhHH-h----hCCCCccEEEEccCCHHHHHHHHHhhc
Q 046314 314 FC---PGSRIVVTTRDKQVLR-K----HGVNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 314 ~~---~gsrIIiTTR~~~v~~-~----~~~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
.. ....||.||.....+. . ...+. .+.++.++.++..+++..++
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~--~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDR--QVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCC--CCBCCCCCTTTHHHHHHHHT
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCe--EEEecCcCHHHHHHHHHHHH
Confidence 21 2245666776543211 1 11222 67888888888888887665
No 226
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.42 E-value=0.00084 Score=84.36 Aligned_cols=156 Identities=12% Similarity=0.155 Sum_probs=88.8
Q ss_pred CCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc------CCceEEEeeccchhc---cC
Q 046314 182 DSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE------FEGNCFIENVREEIE---NG 252 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~~s---~~ 252 (1137)
...+.++||+.+++++.+.|... ...-+.|+|.+|+|||++|+.+++++... ....++..+...... ..
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 260 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcccccc
Confidence 34567999999999999988643 33456899999999999999999977432 122333322221000 00
Q ss_pred cChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------HHHHHHhcccCCCCCCCEEEE
Q 046314 253 VGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------EQLKYFVGWLHGFCPGSRIVV 322 (1137)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------~~l~~l~~~~~~~~~gsrIIi 322 (1137)
.......+.++ ......++.+|++|+++.. .+...++..... ..+.++|.
T Consensus 261 g~~e~~l~~~~-------------------~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~ 320 (758)
T 1r6b_X 261 GDFEKRFKALL-------------------KQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIG 320 (758)
T ss_dssp SCHHHHHHHHH-------------------HHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEE
T ss_pred chHHHHHHHHH-------------------HHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEE
Confidence 11111111111 1111235689999999754 223333332221 23456676
Q ss_pred EeCChhhHHhhCC-----CCccEEEEccCCHHHHHHHHHhhc
Q 046314 323 TTRDKQVLRKHGV-----NDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 323 TTR~~~v~~~~~~-----~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
+|........... .....+.++.++.++..+++...+
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6654432111111 112268899999999888887544
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0016 Score=74.42 Aligned_cols=171 Identities=20% Similarity=0.258 Sum_probs=93.6
Q ss_pred CCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
-+++.|.+..+++|.+.+.. +-.-++-|.++|++|.|||+||+++++.....| +..+..+..+..
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhccc
Confidence 36789999999998876642 334467799999999999999999999876443 222222212222
Q ss_pred cChH-HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcccCCC-
Q 046314 253 VGLV-HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWLHGF- 314 (1137)
Q Consensus 253 ~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~- 314 (1137)
.+-. ...++++ ...-...+++|++|+++.. ..+..|+..+..+
T Consensus 247 ~Ge~e~~ir~lF-------------------~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 247 LGEGPRMVRDVF-------------------RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp CSHHHHHHHHHH-------------------HHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred cchhHHHHHHHH-------------------HHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 2211 2222222 1222356889999998311 1133344333322
Q ss_pred -CCCCEEEEEeCChhh-----HHhhCCCCccEEEEccC-CHHHHHHHHHhhcccCCCC-ChhHHHHHHHHHHHhCCC
Q 046314 315 -CPGSRIVVTTRDKQV-----LRKHGVNDEYVYEVERL-NEDEGLELFYKYAFRQSHC-PEHLTALSKKAVRYAEGN 383 (1137)
Q Consensus 315 -~~gsrIIiTTR~~~v-----~~~~~~~~~~~~~v~~L-~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~G~ 383 (1137)
..+-.||.||-..+. .+....+. .++++.+ +.++-.++|..+.-+.... ..++ ..+++.+.|.
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~--~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDR--KIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEE--EEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceE--EEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 234456667754432 11112233 5777655 5566666776665433221 2223 3455666664
No 228
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.40 E-value=0.00041 Score=76.59 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=38.1
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
++++|++..+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999888775433333457899999999999999999865
No 229
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.38 E-value=0.00054 Score=75.36 Aligned_cols=145 Identities=17% Similarity=0.095 Sum_probs=89.0
Q ss_pred chhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh---ccCCceEEEeeccchhcc-CcChHHHHHHHHH
Q 046314 189 GLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS---NEFEGNCFIENVREEIEN-GVGLVHLHKQVVS 264 (1137)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~~~s~-~~~~~~l~~~ll~ 264 (1137)
|-++.++.|...+..+. .+...++|++|+||||+|+.+++... ........+. .+. ..+...+. ++..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-----~~~~~~~id~ir-~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-----PEGENIGIDDIR-TIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-----CSSSCBCHHHHH-HHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-----CCcCCCCHHHHH-HHHH
Confidence 44556677777776543 67889999999999999999987531 1223333332 111 23333332 2333
Q ss_pred HHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCCh-hhHHhhCCCCccEE
Q 046314 265 LLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDK-QVLRKHGVNDEYVY 341 (1137)
Q Consensus 265 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~ 341 (1137)
..... -..+++-++|+|+++. .+..+.|+..+....+.+.+|++|.++ .+....... ++
T Consensus 73 ~~~~~---------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~ 134 (305)
T 2gno_A 73 FLNYS---------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VF 134 (305)
T ss_dssp HHTSC---------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SE
T ss_pred HHhhc---------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eE
Confidence 32110 0123566889999976 445666766665555677887777554 333332222 79
Q ss_pred EEccCCHHHHHHHHHhhc
Q 046314 342 EVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 342 ~v~~L~~~ea~~Lf~~~a 359 (1137)
++++++.++..+.+...+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999987775
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0014 Score=74.05 Aligned_cols=171 Identities=20% Similarity=0.226 Sum_probs=98.8
Q ss_pred CCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
-+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||.||+++++.....|- ..+..+..+..
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi----~v~~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL----RIVGSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE----EEESGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE----EEEHHHhhhcc
Confidence 36688999999999876532 2234678999999999999999999998765442 22222212222
Q ss_pred cChH-HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcccCCCC
Q 046314 253 VGLV-HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWLHGFC 315 (1137)
Q Consensus 253 ~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 315 (1137)
.+-. ...+.++. ..-...+++|++|+++.. ..+..++..+..+.
T Consensus 257 vGesek~ir~lF~-------------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 257 LGDGPRLCRQIFK-------------------VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp SSHHHHHHHHHHH-------------------HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred CchHHHHHHHHHH-------------------HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 2221 22222222 122356789999988421 11333443333222
Q ss_pred --CCCEEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCC
Q 046314 316 --PGSRIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGN 383 (1137)
Q Consensus 316 --~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~ 383 (1137)
.+-.||.||-..+.+... ..+. .++++..+.++-.++|..+.-+..... -++ ..+++.+.|.
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~--~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDR--KILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEE--EECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeE--EEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 334556677555433221 1222 688999999999999988764432221 223 3445666664
No 231
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.32 E-value=7e-05 Score=72.65 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=34.5
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
-+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999988887653212223478999999999999999977543
No 232
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.32 E-value=0.00012 Score=72.89 Aligned_cols=38 Identities=5% Similarity=0.128 Sum_probs=20.8
Q ss_pred CcccEeeccCCCCccccCccccCCCcCceEeccCCcCc
Q 046314 661 PSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNL 698 (1137)
Q Consensus 661 ~~L~~L~L~~~~~l~~~p~~i~~L~~L~~L~L~~c~~l 698 (1137)
.+|+.||+++|.....--..+..+++|+.|+|++|..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~I 98 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI 98 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCcc
Confidence 35666666666533332334455666666666666543
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.31 E-value=0.0016 Score=81.80 Aligned_cols=151 Identities=14% Similarity=0.116 Sum_probs=83.6
Q ss_pred CCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC------CceEEEeeccchhccCcCh
Q 046314 182 DSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF------EGNCFIENVREEIENGVGL 255 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~s~~~~~ 255 (1137)
...+.+|||+.+++++...+... ...-+.++|.+|+|||++|+.+++.+.... ...++..+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 44568999999999999998643 233478999999999999999999874321 112221110
Q ss_pred HHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhHHhhCC
Q 046314 256 VHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVLRKHGV 335 (1137)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 335 (1137)
...........+...+......++.+|++| ...+....|...+. ....++|.||...........
T Consensus 245 -----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 -----------GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----------cccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000011111122233334677899999 22232333443332 234566666654432111111
Q ss_pred C-----CccEEEEccCCHHHHHHHHHhhc
Q 046314 336 N-----DEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 336 ~-----~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
+ ....+.++.++.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 12379999999999999998654
No 234
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.30 E-value=0.0001 Score=75.04 Aligned_cols=111 Identities=10% Similarity=0.062 Sum_probs=73.1
Q ss_pred CCcEEEecCC-Ccc-----ccCccccCCCCCcEEeccccccccc----ccccccCCCCCcEecccccccccc----cccc
Q 046314 730 NITKLNLCDT-AIE-----EVPSSVECLTNLEYLYINRCKRLKR----VSTSICKLKSLIWLCLNECLNLEK----SWSE 795 (1137)
Q Consensus 730 ~L~~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~~~~~~----~~~~ 795 (1137)
+|++|+|++| .+. .+...+...++|++|+|++|.+... +...+...++|++|+|++|..... +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 5666777766 654 3444566678888888888876532 344455667888888888876543 4556
Q ss_pred cCCCCCcceecc--cCccccccCc-hhhccccccccccCCCCCCCEEeecCCCCC
Q 046314 796 LGNLKSFQYIGA--HGSTISQLPH-LLSHLVSLHASLLSGLSSLNWLNLNNCALT 847 (1137)
Q Consensus 796 l~~l~~L~~L~l--~~n~i~~lp~-~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~ 847 (1137)
+...++|+.|++ ++|.|..--. .+.. .+...++|++|+|++|.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-------~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIAN-------MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHH-------HHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHH-------HHHhCCCcCEEeccCCCCC
Confidence 777788888888 7787763110 1110 1234578899999888765
No 235
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.27 E-value=0.0013 Score=77.05 Aligned_cols=51 Identities=29% Similarity=0.306 Sum_probs=39.4
Q ss_pred CCCCccchhhHHHHHHHhhc---cCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 183 SSKGLVGLNSRIECIKSLLC---VGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..++++|.+..++.+..++. .+....+-+.++|++|+|||++|+++++.+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 34789999998887665443 3333345688999999999999999999765
No 236
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=3.2e-05 Score=82.96 Aligned_cols=37 Identities=35% Similarity=0.379 Sum_probs=16.4
Q ss_pred CCCCCEEeecCCCCCCcc--cccCCCCCCCEEEccCCCCC
Q 046314 833 LSSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRGNNFE 870 (1137)
Q Consensus 833 l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 870 (1137)
+++|+.|+|++|.++++. ..+..+ +|++|+|++|.+.
T Consensus 195 l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 195 APNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp STTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred CCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 444455555555444431 112222 5555555555544
No 237
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.22 E-value=0.00016 Score=71.88 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=18.4
Q ss_pred CCCEEeecCC-CCCC-cccccCCCCCCCEEEccCC
Q 046314 835 SLNWLNLNNC-ALTA-IPEEIGCLPSLEWLELRGN 867 (1137)
Q Consensus 835 ~L~~L~Ls~n-~l~~-lp~~l~~l~~L~~L~Ls~n 867 (1137)
+|++|+|++| ++++ --..+..+++|++|+|++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 4666666666 3554 1123445666666666665
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.17 E-value=0.002 Score=70.62 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
.++.+.++|++|+|||+||+++++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45678899999999999999999988443
No 239
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.15 E-value=0.00085 Score=65.32 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=27.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
-..++|+|..|.|||||++.++......-...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 457899999999999999999997754311145543
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.04 E-value=0.002 Score=72.05 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=39.3
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
+.++|++..++.+...+..+ .-+.++|.+|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 57899999999888877543 358899999999999999999877544
No 241
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.01 E-value=0.0019 Score=70.32 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=80.6
Q ss_pred CCCCCccchhhHHHHHHHhhcc--C--------CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhcc
Q 046314 182 DSSKGLVGLNSRIECIKSLLCV--G--------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIEN 251 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~ 251 (1137)
...++++|.+..++++..+... . -.-.+-|.|+|++|+||||||+.++..... ..+.+. ... ...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~-~~~ 111 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSD-FVE 111 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHH-HHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHH-HHH
Confidence 3446788888777777654421 0 011123899999999999999999987652 222222 111 100
Q ss_pred CcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcccCCCC
Q 046314 252 GVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWLHGFC 315 (1137)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 315 (1137)
... ...... +.. .+...-...+.++|+|+++.. ..+..++..+....
T Consensus 112 ~~~-~~~~~~-i~~---------------~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 112 MFV-GVGAAR-VRD---------------LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp STT-THHHHH-HHH---------------HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred HHh-hHHHHH-HHH---------------HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 000 000000 000 011111235678999998421 11333443333221
Q ss_pred C--CCEEEEEeCChhhHHh-----hCCCCccEEEEccCCHHHHHHHHHhhc
Q 046314 316 P--GSRIVVTTRDKQVLRK-----HGVNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 316 ~--gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
. ...++.||....++.. ...+. .++++..+.++-.+++..++
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~--~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDR--QIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCC--EEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCe--EEEeCCcCHHHHHHHHHHHH
Confidence 1 2234456665543221 12334 78999999998888887665
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.99 E-value=0.0011 Score=81.79 Aligned_cols=171 Identities=15% Similarity=0.206 Sum_probs=97.4
Q ss_pred CCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCc
Q 046314 185 KGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGV 253 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~ 253 (1137)
+++.|.+..+++|.+++.. +..-++-|.++|++|.|||+||++++++.... ++..+..+..+...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 5688999999888876532 12346789999999999999999999876433 23333222122222
Q ss_pred ChH-HHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcccCCCC--CC
Q 046314 254 GLV-HLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLHGFC--PG 317 (1137)
Q Consensus 254 ~~~-~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~~--~g 317 (1137)
+-. ...+.++ .......+.+|+||+++.. ..+..|+..+.... .+
T Consensus 280 gese~~lr~lF-------------------~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 280 GESESNLRKAF-------------------EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp THHHHHHHHHH-------------------HHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred hHHHHHHHHHH-------------------HHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 211 1112211 2333467899999998431 11333333222221 23
Q ss_pred CEEEEEeCChhhHHh-h----CCCCccEEEEccCCHHHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHhCCCc
Q 046314 318 SRIVVTTRDKQVLRK-H----GVNDEYVYEVERLNEDEGLELFYKYAFRQSHCP-EHLTALSKKAVRYAEGNP 384 (1137)
Q Consensus 318 srIIiTTR~~~v~~~-~----~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~G~P 384 (1137)
-.||.||...+.+.. . ..+. .++++..+.++-.+++..+..+..... .++ ..+++.+.|.-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~--~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDR--EVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCE--EEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccce--EEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 344556654432211 1 2333 789999999999999988764332211 122 34566676653
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.98 E-value=0.0042 Score=74.27 Aligned_cols=51 Identities=31% Similarity=0.369 Sum_probs=37.5
Q ss_pred CccchhhHHHHHHHhhcc----CCCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 186 GLVGLNSRIECIKSLLCV----GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
+++|.+.-.+.+.+.+.. .......+.++|++|+||||||+.++......|
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 378888877777554431 112356899999999999999999999875443
No 244
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.98 E-value=0.002 Score=69.00 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=35.9
Q ss_pred CCCCCccchhhHHHHHHHhhcc--C--------CCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 182 DSSKGLVGLNSRIECIKSLLCV--G--------FPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...++++|.+....++..+... . -.-.+-+.|+|++|+||||||+.++....
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3446788888776666554321 0 01112389999999999999999998765
No 245
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.91 E-value=0.0016 Score=81.66 Aligned_cols=150 Identities=16% Similarity=0.218 Sum_probs=83.0
Q ss_pred CCccchhhHHHHHHHhhccCC-------CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHH
Q 046314 185 KGLVGLNSRIECIKSLLCVGF-------PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVH 257 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~ 257 (1137)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-...+.+ +..+ ........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~-~~~~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSE-YMEKHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGG-GCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echh-cccccccc-
Confidence 568999999988887775321 1134799999999999999999999874433333333 2222 11111111
Q ss_pred HHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcccCC-----------CCCCCEEEEEe
Q 046314 258 LHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF--EQLKYFVGWLHG-----------FCPGSRIVVTT 324 (1137)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~-----------~~~gsrIIiTT 324 (1137)
.......++ +...-+|+||+++.. +....|...+.. .....+||+||
T Consensus 568 -----------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 111111111 123348899999653 333333322211 11356888888
Q ss_pred CCh-----hh----HHh------hCCCCccEEEEccCCHHHHHHHHHhhc
Q 046314 325 RDK-----QV----LRK------HGVNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 325 R~~-----~v----~~~------~~~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
... .+ ... ...+. ++.+++|+.++..+++....
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~--~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDE--IIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSE--EEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCe--EEecCCCCHHHHHHHHHHHH
Confidence 731 11 000 12333 78999999988887776654
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.87 E-value=0.013 Score=63.27 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=79.0
Q ss_pred CCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCc
Q 046314 185 KGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGV 253 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~ 253 (1137)
+++.|.+...++|.+.+.. +-.-.+-++|+|++|.||||||+.++...... .+.+. ..+ +....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~-l~~~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPE-LLNMY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTT-TCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHH-HHhhh
Confidence 5567777777766654310 10111229999999999999999999876432 23332 111 11111
Q ss_pred ChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcccCCC--CCCC
Q 046314 254 GLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF-------------EQLKYFVGWLHGF--CPGS 318 (1137)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~--~~gs 318 (1137)
.....+. +..+. ...-...+.++++|+++.. .....+...+... ....
T Consensus 85 -~~~~~~~-i~~vf---------------~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 85 -VGESERA-VRQVF---------------QRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp -THHHHHH-HHHHH---------------HHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred -hhHHHHH-HHHHH---------------HHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 1111111 11111 1111235678888888541 1122233222211 1233
Q ss_pred EEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhc
Q 046314 319 RIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYA 359 (1137)
Q Consensus 319 rIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a 359 (1137)
-++.+|....++... ..+. .+.++..+.++-.+++..+.
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~--~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDK--TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCE--EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCe--EEEeCCcCHHHHHHHHHHHH
Confidence 456677766543221 3444 78899999999999988765
No 247
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.83 E-value=0.00065 Score=72.76 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=27.2
Q ss_pred CCcEEEecCCCccccC---ccccCCCCCcEEecccccccccccccccCCC--CCcEecccccccc
Q 046314 730 NITKLNLCDTAIEEVP---SSVECLTNLEYLYINRCKRLKRVSTSICKLK--SLIWLCLNECLNL 789 (1137)
Q Consensus 730 ~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~L~~~~~~ 789 (1137)
+|+.|+|++|.+..++ ..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|+..
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 4455555555555432 3344556666666666554432 1122222 4555555555443
No 248
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.79 E-value=0.0015 Score=59.14 Aligned_cols=71 Identities=6% Similarity=0.004 Sum_probs=52.1
Q ss_pred CcccEEEcccccccCCchHHHHHHHHhcCCCcEEEcCCCCCCCcchHHHHHHhhhcceeEEEeccccccchhhHHHHHHH
Q 046314 8 CNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDEDLNRGDEISPALMKAIEGSKISVIIFSKDYASSKWCLNELVKI 87 (1137)
Q Consensus 8 ~~~dvFis~~~~d~r~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~ 87 (1137)
.+|.|||||+.+|. .+.|...|.+.|+... | +.|+.|...||+.++..+.|.||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 58999999999982 3444445545566332 3 568899999999999999999999998654
Q ss_pred HHhhhcCCCeEEEE
Q 046314 88 LKCKNLKGQTVIPI 101 (1137)
Q Consensus 88 ~~~~~~~~~~v~pv 101 (1137)
. +.+..++-|
T Consensus 64 ~----~~gkpIigV 73 (111)
T 1eiw_A 64 R----KSSKPIITV 73 (111)
T ss_dssp T----TTTCCEEEE
T ss_pred H----HcCCCEEEE
Confidence 3 455556655
No 249
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.67 E-value=0.014 Score=68.25 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=84.3
Q ss_pred CCCCCccchhhHHHHHHHhhcc--C--------CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhcc
Q 046314 182 DSSKGLVGLNSRIECIKSLLCV--G--------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIEN 251 (1137)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~ 251 (1137)
...++++|.+..+.++.++... . ..-.+-|.|+|++|.||||||++++...... .+.+. ..+ +..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~-~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSD-FVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGG-GTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhH-HHH
Confidence 3457789999888777765431 0 0112348999999999999999999876422 22222 211 111
Q ss_pred CcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcccCCCC
Q 046314 252 GVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWLHGFC 315 (1137)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 315 (1137)
.+ ..... .-+..+.. ..-...+.++++|+++.. ..+..++..+..+.
T Consensus 103 ~~-~g~~~-~~v~~lfq---------------~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 MF-VGVGA-ARVRDLFE---------------TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp SC-TTHHH-HHHHHHTT---------------TSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred hh-hhhHH-HHHHHHHH---------------HHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 11 00000 00111110 000123578999998421 12344444333222
Q ss_pred --CCCEEEEEeCChhhHHhh-----CCCCccEEEEccCCHHHHHHHHHhhcc
Q 046314 316 --PGSRIVVTTRDKQVLRKH-----GVNDEYVYEVERLNEDEGLELFYKYAF 360 (1137)
Q Consensus 316 --~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~a~ 360 (1137)
.+..|+.||.....+... ..+. .+.++..+.++-.+++..++-
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr--~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDR--QIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCC--EEECCCCCHHHHHHHHHHTTS
T ss_pred cCccEEEEEecCChhhcCcccccccccce--EEecCCCCHHHHHHHHHHHHh
Confidence 234455566665543211 2233 789999999998998887763
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.43 E-value=0.0031 Score=79.04 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=41.4
Q ss_pred CCCccchhhHHHHHHHhhcc-----------CCCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 184 SKGLVGLNSRIECIKSLLCV-----------GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
-++++|.+..+++|.+++.. +-.....|.|+|.+|+||||||++++......
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 36799999999998887753 22345679999999999999999998876443
No 251
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.41 E-value=0.007 Score=76.78 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=39.1
Q ss_pred CCccchhhHHHHHHHhhccC------C-CCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 185 KGLVGLNSRIECIKSLLCVG------F-PDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
..++|.+..++.+...+... . .....+.|+|++|+|||++|+++++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35799999998887776532 1 12368999999999999999999997744
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.39 E-value=0.0065 Score=76.24 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=38.6
Q ss_pred CCccchhhHHHHHHHhhccCC-------CCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 185 KGLVGLNSRIECIKSLLCVGF-------PDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 468999999988877665211 1235789999999999999999999873
No 253
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.38 E-value=0.019 Score=65.26 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...+.++|++|+|||++|+++++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998774
No 254
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.26 E-value=0.014 Score=64.22 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=38.3
Q ss_pred CCCccc----hhhHHHHHHHhhccCCC-CeEEEEEEccCCChhhHHHHHHHHHhh-ccCCceEEEe
Q 046314 184 SKGLVG----LNSRIECIKSLLCVGFP-DVRIVGIWGMGGIGKTTLAKALFNQVS-NEFEGNCFIE 243 (1137)
Q Consensus 184 ~~~~vG----r~~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 243 (1137)
.++|++ +...++.+.+++..... ..+.+.|+|.+|+|||+||+++++... ..-..+.++.
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345554 33334445555543222 246788999999999999999999876 5444445543
No 255
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.10 E-value=0.067 Score=53.45 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.5
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 256
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.02 E-value=0.0085 Score=62.32 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=26.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
.-.+++|.|.+|+||||||+.++. ..-..++|+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 346899999999999999999987 2224556664
No 257
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.80 E-value=0.19 Score=57.50 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=27.8
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCF 241 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 241 (1137)
.+++|.++|.+|+||||++..++..++.+-..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 47899999999999999999999877654333333
No 258
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.68 E-value=0.036 Score=61.14 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=28.6
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
...++|+|+|.+|+||||++..++..+...-..+.++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3468999999999999999999998776543333333
No 259
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.61 E-value=0.006 Score=68.38 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=66.7
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceE-EEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNC-FIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLR 287 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~-~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 287 (1137)
.+|+|+|+.|.||||+.+.+...+.......+ .+.+..+ ....... ..+.............+.+...|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~~~~~~--------~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FVHESKK--------CLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SCCCCSS--------SEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hhhhccc--------cceeeeeeccccCCHHHHHHHHhh
Confidence 59999999999999999999887755433333 3322111 0000000 000000011122334457788899
Q ss_pred CCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhhH
Q 046314 288 RTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQVL 330 (1137)
Q Consensus 288 ~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 330 (1137)
..+=+|++|...+.+.++.+.... ..|..||+||.+...+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999999887766654432 2466789998876554
No 260
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.58 E-value=0.005 Score=65.98 Aligned_cols=111 Identities=10% Similarity=0.088 Sum_probs=64.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeecc-chhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVR-EEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~-~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
.-.+++|+|+.|.|||||++.+...+...+.+.+.+.... +...+.. . .+ +.......+.......+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~-~-----~~---v~q~~~gl~~~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK-K-----SI---VNQREVGEDTKSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-S-----SE---EEEEEBTTTBSCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCc-c-----ee---eeHHHhCCCHHHHHHHHHHH
Confidence 3478999999999999999999887655444555443210 0000000 0 00 00000011112334455666
Q ss_pred hcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChhh
Q 046314 286 LRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQV 329 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v 329 (1137)
+..++=+|++|...+.+....++... ..|.-|++||.+..+
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 76677789999998776655544322 246678888887654
No 261
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.55 E-value=0.0045 Score=67.31 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChhhHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
-+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 467789999999999999999876
No 262
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.46 E-value=0.044 Score=59.78 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=27.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
.++++++|.+|+||||++..++..+..+-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67999999999999999999998776543334444
No 263
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.43 E-value=0.0082 Score=60.43 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=60.1
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHh--CccccCCC----------
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLL--GERIEMGG---------- 275 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~--~~~~~~~~---------- 275 (1137)
...|.|++..|-||||.|-.++-+...+=-.+.++..+.. . ...+...+.+.+.-.+. +.......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg-~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG-T-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC-S-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC-C-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 3466777777799999999999887665445555542221 0 11222222222200000 00000000
Q ss_pred CCccHHHHHhhcCCce-EEEEeCCCCHH-----HHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 276 PNIPAYTLERLRRTKV-FFVLDDVSKFE-----QLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 276 ~~~~~~l~~~L~~kr~-LlVLDdv~~~~-----~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
.......++.+...++ |||||++.... ..+.++..+........||||+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 1112333455555555 99999983321 12222222222346778999999864
No 264
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.31 E-value=0.023 Score=70.15 Aligned_cols=153 Identities=15% Similarity=0.203 Sum_probs=80.5
Q ss_pred CCCccchhhHHHHHHHhhccC-----------CCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccC
Q 046314 184 SKGLVGLNSRIECIKSLLCVG-----------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG 252 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~ 252 (1137)
-+++.|.+...++|.+.+... ....+-|.++|++|.|||.+|+++++.....| +.....+..+..
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~~~l~s~~ 551 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKGPELLTMW 551 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCHHHHHTTT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEeccchhhccc
Confidence 356788999888888766421 12345688999999999999999998765432 111111101111
Q ss_pred cC-hHHHHHHHHHHHhCccccCCCCCccHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcccCCCC
Q 046314 253 VG-LVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRRTKVFFVLDDVSKF----------------EQLKYFVGWLHGFC 315 (1137)
Q Consensus 253 ~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 315 (1137)
.+ -+...+++ +...-+..+.+|++|+++.. ..+..|+..+....
T Consensus 552 vGese~~vr~l-------------------F~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 552 FGESEANVREI-------------------FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp CSSCHHHHHHH-------------------HHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred cchHHHHHHHH-------------------HHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 00 01111111 12222456899999998431 01344444444333
Q ss_pred CCC-EEEE-EeCChh-----hHHhhCCCCccEEEEccCCHHHHHHHHHhhccc
Q 046314 316 PGS-RIVV-TTRDKQ-----VLRKHGVNDEYVYEVERLNEDEGLELFYKYAFR 361 (1137)
Q Consensus 316 ~gs-rIIi-TTR~~~-----v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~ 361 (1137)
... .+|| ||-..+ +++.-..+. .+.++..+.++-.++|..+.-+
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~--~i~v~lPd~~~R~~il~~~l~~ 663 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQ--LIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCC--EEEC-----CHHHHTTTTTSSC
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceE--EEEECCcCHHHHHHHHHHHhcC
Confidence 322 2333 443332 222113445 7889888888888888877643
No 265
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.27 E-value=0.21 Score=55.67 Aligned_cols=156 Identities=10% Similarity=-0.036 Sum_probs=97.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh-ccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS-NEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
-.++..++|..|.||++.|+.+...+. ..|+....+. .....++..+...+- ..-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~-------------------~~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-----IDPNTDWNAIFSLCQ-------------------AMS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-----CCTTCCHHHHHHHHH-------------------HHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-----ecCCCCHHHHHHHhc-------------------CcC
Confidence 356889999999999999999988764 3454321121 111234444433321 112
Q ss_pred hcCCceEEEEeCCCC---HHHHHHHhcccCCCCCCCEEEEEeCC-------hhhHHhhCCCCccEEEEccCCHHHHHHHH
Q 046314 286 LRRTKVFFVLDDVSK---FEQLKYFVGWLHGFCPGSRIVVTTRD-------KQVLRKHGVNDEYVYEVERLNEDEGLELF 355 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~---~~~l~~l~~~~~~~~~gsrIIiTTR~-------~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf 355 (1137)
+.+++-++|+|+++. .+..+.|...+....+++.+|++|-. +.+.....- ...+++..+++.++..+.+
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s-r~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN-RSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT-TCEEEEECCCCTTHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh-CceEEEeeCCCHHHHHHHH
Confidence 345566788999865 34566666666555567777776643 234444322 2238999999999999888
Q ss_pred HhhcccCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 046314 356 YKYAFRQSHCPEHLTALSKKAVRYAEGNPLALEV 389 (1137)
Q Consensus 356 ~~~a~~~~~~~~~~~~l~~~iv~~~~G~PLal~~ 389 (1137)
...+-.....-+ .+.+..+++.++|.+..+..
T Consensus 152 ~~~~~~~g~~i~--~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 152 AARAKQLNLELD--DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHTTCEEC--HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHcCCCCC--HHHHHHHHHHhchHHHHHHH
Confidence 777643321111 45567788999998876654
No 266
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.26 E-value=0.15 Score=55.55 Aligned_cols=45 Identities=27% Similarity=0.257 Sum_probs=32.8
Q ss_pred hhHHHHHHHhhccC------CCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 191 NSRIECIKSLLCVG------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 191 ~~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
+.-.++|.+.+... .....+|+|+|.+|+||||++..++..+...
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 33445555655422 1346899999999999999999999877654
No 267
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.17 E-value=0.016 Score=60.79 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=27.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
-.+++|.|.+|+|||||++.++......-..+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 368999999999999999999976543333445543
No 268
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.93 E-value=0.34 Score=55.31 Aligned_cols=36 Identities=25% Similarity=0.104 Sum_probs=28.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
..++|+++|.+|+||||++..++..++.+=..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999998776543333333
No 269
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.83 E-value=0.15 Score=56.27 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=25.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
...+++|+|+.|+||||+++.++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876543
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.74 E-value=0.031 Score=57.60 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=24.8
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
....+|+|.|..|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999988765
No 271
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.72 E-value=0.012 Score=60.94 Aligned_cols=109 Identities=15% Similarity=0.047 Sum_probs=57.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcc--ccC-CCCCccHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGER--IEM-GGPNIPAYTLE 284 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~--~~~-~~~~~~~~l~~ 284 (1137)
-.++.|+|..|+||||++..++.+...+-..+.++....+ .. +. .++++.+.... ... ...+..+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d---~r-~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID---TR-SI----RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---GG-GC----SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC---ch-HH----HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 4688999999999999999999988665444444431111 00 00 11122221110 001 11111222222
Q ss_pred hhcCC-ceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCCh
Q 046314 285 RLRRT-KVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDK 327 (1137)
Q Consensus 285 ~L~~k-r~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~ 327 (1137)
.+.+. .-+||+|.+.. .++++.+....+ .|-.||+|-++.
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccc
Confidence 22233 44999999864 345554432111 378899999853
No 272
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.72 E-value=0.046 Score=55.92 Aligned_cols=44 Identities=30% Similarity=0.388 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhhcc-CCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 190 LNSRIECIKSLLCV-GFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 190 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
|+..++++.+.+.. ......+|+|.|..|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45556666555442 224568999999999999999999988664
No 273
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.69 E-value=0.093 Score=58.45 Aligned_cols=50 Identities=32% Similarity=0.348 Sum_probs=36.3
Q ss_pred HHHHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 194 IECIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 194 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
..+|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345556664 23344579999999999999999999987765444566765
No 274
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.67 E-value=0.022 Score=64.48 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=35.5
Q ss_pred ccchhhHHHHHHHhhc-------------cCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 187 LVGLNSRIECIKSLLC-------------VGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 187 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
++|.+..++.+...+. ......+.|.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6788887777776662 1111345789999999999999999998874
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.64 E-value=0.014 Score=58.30 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.7
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+|.|.|++|+||||+|+.+.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 276
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=94.49 E-value=0.15 Score=49.48 Aligned_cols=112 Identities=22% Similarity=0.230 Sum_probs=75.9
Q ss_pred cccEEEcc--------------cccccCCchHHHHHHHHhcCCCcEEEcC-CCC-------C-CCcchHHHHHHhhhcce
Q 046314 9 NYDVFLSF--------------RGEDTRENFTSHLYAALCGKKIKTFIDE-DLN-------R-GDEISPALMKAIEGSKI 65 (1137)
Q Consensus 9 ~~dvFis~--------------~~~d~r~~~~~~l~~~l~~~g~~~~~d~-~~~-------~-g~~~~~~~~~~i~~s~~ 65 (1137)
+--+|++| ..+| .....-|...-....+--|.|. |.. . -+.|-+.+.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 34578999 3455 3445556666666566567775 442 2 35688999999999999
Q ss_pred eEEEeccccccchhhHHHHHHHHHhhhcCCCeEEEEEeecC-cccccccccchHHHHHHHH
Q 046314 66 SVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVS-PSDVRKQTGTFGEGFVKLE 125 (1137)
Q Consensus 66 ~i~v~S~~y~~s~~c~~el~~~~~~~~~~~~~v~pvfy~v~-p~~vr~~~g~~~~~~~~~~ 125 (1137)
.|+++|++...|.|-.+|++.++. +.+..||-|.-+-+ -++++.-.|++.......+
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~w 140 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLW 140 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHHHH
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccchhhHhhcC
Confidence 999999999999999999887762 34567777753322 2345555566555444433
No 277
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.38 E-value=0.047 Score=51.43 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=34.0
Q ss_pred eecccCcccc--ccCchhhccccccccccCCCCCCCEEeecCCCCCCcccc-cCCCCCCCEEEccCCCCC
Q 046314 804 YIGAHGSTIS--QLPHLLSHLVSLHASLLSGLSSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRGNNFE 870 (1137)
Q Consensus 804 ~L~l~~n~i~--~lp~~l~~l~~L~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~ 870 (1137)
.++.+++.++ .+|..+ .++|+.|+|++|.|+.+|.. +..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-------------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-------------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-------------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC-------------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555566665 666422 23577777777777776653 566777777777777554
No 278
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.37 E-value=0.12 Score=59.34 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=25.9
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
..++|.++|.+|+||||+|..++..+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999887665
No 279
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.33 E-value=0.024 Score=64.11 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=63.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEE-EeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCF-IENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLER 285 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~-~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 285 (1137)
.-.+++|+|+.|.||||+++.+...+.....+.+. +.+-.+ .... .. ..-+.......+.......++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-----~~~~---~~-~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-----YVFK---HK-KSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-----SCCC---CS-SSEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-----hhhc---cC-ceEEEeeecCCCHHHHHHHHHHH
Confidence 34689999999999999999999876554344443 321100 0000 00 00000000001222334566777
Q ss_pred hcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 286 LRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
+...+=+|++|.+.+.+.+...+... ..|..|+.|+-+..
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 77788899999998877765544332 34666777776644
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.23 E-value=0.024 Score=56.18 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.4
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+|+|.|++|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999988764
No 281
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.18 E-value=0.015 Score=58.53 Aligned_cols=25 Identities=24% Similarity=0.102 Sum_probs=21.3
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.++.|+|..|+||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999987777654
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.17 E-value=0.05 Score=59.06 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.7
Q ss_pred CCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 205 FPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.....+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 346789999999999999999999886654
No 283
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.17 E-value=0.04 Score=60.86 Aligned_cols=49 Identities=22% Similarity=0.210 Sum_probs=33.8
Q ss_pred cchhhHHHHHHHhhcc--CCCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 188 VGLNSRIECIKSLLCV--GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 188 vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
|+.+.-.+++.+.+.. ..+....|.|+|++|.||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3444444444444431 234567799999999999999999998766554
No 284
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.14 E-value=0.036 Score=64.92 Aligned_cols=45 Identities=27% Similarity=0.225 Sum_probs=37.8
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+.++|++..++.+...+..+ .-|.++|++|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 46899999999888777544 3688999999999999999988663
No 285
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.07 E-value=0.039 Score=56.57 Aligned_cols=89 Identities=22% Similarity=0.208 Sum_probs=46.8
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhccCCceEEEe---eccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE---NVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL 286 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~---~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 286 (1137)
+|.|.|++|+||||.|+.++.++. ...+. -+|+.+.....+....+..+. .....+..-+...+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~~----~G~lvpd~iv~~lv~~~l 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYME----RGELVPDDLIIALIEEVF 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHH----HTCCCCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHHh----cCCcCCHHHHHHHHHHhh
Confidence 477999999999999999988652 12222 011111111111111111111 111112222345667777
Q ss_pred cCCceEEEEeCC-CCHHHHHHHh
Q 046314 287 RRTKVFFVLDDV-SKFEQLKYFV 308 (1137)
Q Consensus 287 ~~kr~LlVLDdv-~~~~~l~~l~ 308 (1137)
..... +|||+. .+..|.+.|.
T Consensus 73 ~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 73 PKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp CSSSC-EEEESCCCSHHHHHHHH
T ss_pred ccCCc-eEecCCchhHHHHHHHH
Confidence 66554 689998 4566766653
No 286
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.05 E-value=0.053 Score=51.06 Aligned_cols=52 Identities=25% Similarity=0.373 Sum_probs=43.3
Q ss_pred CEEeecCCCCC--CcccccCCCCCCCEEEccCCCCCcCC--CCCCcccccceecccccc
Q 046314 837 NWLNLNNCALT--AIPEEIGCLPSLEWLELRGNNFESLP--SIPELPPSLKWLQASNCK 891 (1137)
Q Consensus 837 ~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~l~~~L~~L~l~~c~ 891 (1137)
..++.+++.++ .+|..+ .++|+.|+|++|+|+.+| .+..++ +|+.|+|.+++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALP-ALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCT-TCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhcc-ccCEEEecCCC
Confidence 47888999998 899654 357999999999999999 566677 89999998775
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.03 E-value=0.026 Score=57.73 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.++|+|+|++|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998773
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.02 E-value=0.025 Score=56.89 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+.|.|+|++|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 289
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.95 E-value=0.17 Score=56.41 Aligned_cols=47 Identities=26% Similarity=0.256 Sum_probs=33.1
Q ss_pred HHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc------cCCceEEEe
Q 046314 197 IKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN------EFEGNCFIE 243 (1137)
Q Consensus 197 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 243 (1137)
|..+|..+-..-.++.|.|.+|+||||||..++..... .-..++|+.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44455433345679999999999999999999886432 224566765
No 290
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.88 E-value=0.027 Score=56.92 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=30.0
Q ss_pred cCCCCCcEEecccc-cccc----cccccccCCCCCcEecccccccccc----cccccCCCCCcceecccCcccc
Q 046314 749 ECLTNLEYLYINRC-KRLK----RVSTSICKLKSLIWLCLNECLNLEK----SWSELGNLKSFQYIGAHGSTIS 813 (1137)
Q Consensus 749 ~~l~~L~~L~L~~~-~~l~----~lp~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~n~i~ 813 (1137)
.+-+.|+.|+|++| .+.. .+-..+..-+.|+.|+|++|..... +.+.+..-+.|+.|+|+.|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33456666666654 3221 1233344445566666666554422 1222333344555555554443
No 291
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.86 E-value=0.13 Score=59.49 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=28.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
...+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999999876543 3445543
No 292
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.84 E-value=0.069 Score=58.63 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=34.5
Q ss_pred ccchhhHHHHHHHhhccC--CCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 187 LVGLNSRIECIKSLLCVG--FPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+|-...+..+...+... ...+.+|||.|..|+||||+|+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456666666655444322 34577999999999999999999887665
No 293
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.77 E-value=0.053 Score=57.37 Aligned_cols=41 Identities=17% Similarity=0.003 Sum_probs=29.0
Q ss_pred hHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 192 SRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..+.++.+...........|+|.|++|+||||+|+.+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444443333223356789999999999999999998765
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.77 E-value=0.029 Score=55.68 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.6
Q ss_pred EEEEEEccCCChhhHHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 44
No 295
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.70 E-value=0.13 Score=55.69 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=27.4
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhccC--CceEEEe
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNEF--EGNCFIE 243 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 243 (1137)
++-|.|.+|+||||||.+++.....++ ..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 689999999999999999988766543 3566765
No 296
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.67 E-value=0.11 Score=57.33 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHH
Q 046314 194 IECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLL 266 (1137)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l 266 (1137)
+..|..++ .+-..-.++.|.|.+|+||||+|..++.....+-..++|+. -.....++...+++..
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s-------lE~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS-------LEMGKKENIKRLIVTA 119 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE-------SSSCHHHHHHHHHHHH
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE-------CCCCHHHHHHHHHHHH
Confidence 33444444 33344568999999999999999999876654435566654 2345556666665543
No 297
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.67 E-value=0.034 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.++|+|.|+.|+||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 298
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.62 E-value=0.037 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEEccCCChhhHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.60 E-value=0.057 Score=54.54 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.4
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.+|.|.|++|+||||+|+.+..++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 300
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.52 E-value=0.15 Score=55.69 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=27.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
...+++|+|+.|+||||+++.++..+... .+.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 45799999999999999999999876543 334444
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.49 E-value=0.066 Score=54.67 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=24.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...+|+|.|+.|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998875
No 302
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.48 E-value=0.037 Score=62.09 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=36.3
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+...++++|.+..++.+....... ...-|.|+|.+|+|||++|+++++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 334567999988666554433211 122388999999999999999998764
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.42 E-value=0.051 Score=54.93 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
...+|.|.|++|+||||+|+.+..++
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998876
No 304
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.32 E-value=0.068 Score=61.33 Aligned_cols=37 Identities=30% Similarity=0.600 Sum_probs=27.5
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhccCCceEEEeecc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVR 246 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 246 (1137)
.++|+|.+|+||||||..+......++...+-...++
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iG 189 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVG 189 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEES
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeec
Confidence 5889999999999999999987765554444333333
No 305
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.30 E-value=0.07 Score=53.68 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=24.7
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
...+|+|.|++|+||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999998754
No 306
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.30 E-value=0.27 Score=54.85 Aligned_cols=50 Identities=26% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 194 IECIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 194 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
+..|..+|. .+-..-+++.|.|.+|+||||||..++......=..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344555564 23234568999999999999999999887655444566765
No 307
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.29 E-value=0.45 Score=53.05 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=27.6
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
...+++|+|..|+||||+++.++..+... .+.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 46799999999999999999999876543 334444
No 308
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.27 E-value=0.12 Score=57.63 Aligned_cols=50 Identities=32% Similarity=0.379 Sum_probs=35.5
Q ss_pred HHHHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 194 IECIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 194 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
+..|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344555554 23234468999999999999999999887655444677775
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.25 E-value=0.036 Score=55.06 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.3
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+|+|+|+.|+||||+|+.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988754
No 310
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.22 E-value=0.036 Score=55.60 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=22.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
-++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988654
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.18 E-value=0.049 Score=57.99 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.4
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
++|.|.|++|+||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 312
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.17 E-value=0.044 Score=55.42 Aligned_cols=24 Identities=42% Similarity=0.458 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
..+++|+|++|.|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999765
No 313
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.13 E-value=0.031 Score=56.14 Aligned_cols=29 Identities=41% Similarity=0.608 Sum_probs=24.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCC
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFE 237 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1137)
|.|.|.|++|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45889999999999999999887655553
No 314
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.11 E-value=0.035 Score=55.56 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=22.5
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.+.|.|.|++|+||||+|+.++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998876
No 315
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.09 E-value=0.071 Score=52.50 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=27.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc-CCceE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNC 240 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~ 240 (1137)
..++++|.|..|+|||||+..+...+..+ +....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ 37 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence 35789999999999999999999987654 44333
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.05 E-value=0.047 Score=55.79 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=22.4
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.|+|.|+.|+||||+|+.++.++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999987753
No 317
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.04 E-value=0.13 Score=57.04 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=29.1
Q ss_pred HHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 194 IECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
++.|.-.+..+. -+.++|+|.+|.|||||++.+.+.+....
T Consensus 162 iraID~~~pi~r--GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 162 ARVLDLASPIGR--GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp HHHHHHHSCCBT--TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred ceeeeeeeeecC--CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 334444443332 35899999999999999999988765443
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.01 E-value=0.056 Score=54.69 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.5
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..+|+|.|++|+||||+|+.+..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.00 E-value=0.071 Score=54.42 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
...+|+|.|+.|.||||+|+.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998876
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.97 E-value=0.053 Score=54.68 Aligned_cols=26 Identities=23% Similarity=0.495 Sum_probs=23.3
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.+|.|.|++|+||||+|+.+..++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987754
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.96 E-value=0.049 Score=54.27 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.8
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 322
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.93 E-value=0.06 Score=53.54 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.6
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 323
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.92 E-value=0.046 Score=55.93 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..+|+|.|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 324
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.88 E-value=0.4 Score=53.66 Aligned_cols=51 Identities=33% Similarity=0.350 Sum_probs=35.6
Q ss_pred HHHHHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 193 RIECIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 193 ~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
-+..|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3445555664 22233458889999999999999999887654444677775
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.85 E-value=0.062 Score=54.92 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.8
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
....+|+|.|++|+||||+|+.+++++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998764
No 326
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.73 E-value=1.6 Score=48.88 Aligned_cols=50 Identities=26% Similarity=0.216 Sum_probs=36.4
Q ss_pred CCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 184 SKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...++|....+.++...+..-......|.|+|.+|.||+++|+.+...-.
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 35689988888887766643222223477999999999999999876543
No 327
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.72 E-value=0.099 Score=53.67 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.6
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
.+|+|.|++|+||||+|+.+..++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 6899999999999999999999876543
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.69 E-value=0.053 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..+|+|.|++|+||||+|+.+++++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 329
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.67 E-value=0.12 Score=57.13 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=60.5
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcccc-C--CCCCccHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIE-M--GGPNIPAYTLER 285 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~-~--~~~~~~~~l~~~ 285 (1137)
.+++|+|..|.|||||++.+...+.. -.+.+.+.+..+ .... . ...... . .+......+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e-~~~~----~---------~~~~i~~~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEE-IVFK----H---------HKNYTQLFFGGNITSADCLKSC 236 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCC-CCCS----S---------CSSEEEEECBTTBCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeec-cccc----c---------chhEEEEEeCCChhHHHHHHHH
Confidence 47999999999999999999876543 345666654322 1100 0 000000 0 334445566777
Q ss_pred hcCCceEEEEeCCCCHHHHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 286 LRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 286 L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
|..++=+|++|.+...+.++.+.. +. ..+.-+|+||.+..
T Consensus 237 L~~~p~ilildE~~~~e~~~~l~~-~~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFYNV-LC--SGHKGTLTTLHAGS 276 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHHHH-HH--TTCCCEEEEEECSS
T ss_pred hhhCCCEEEEcCCChHHHHHHHHH-Hh--cCCCEEEEEEcccH
Confidence 888888999999987655554432 22 11223666665543
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.63 E-value=0.069 Score=53.66 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.5
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
...|+|.|++|+||||+|+.+++++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998866
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.63 E-value=0.05 Score=54.53 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=18.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+|.|.|++|+||||+|+.+..++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999987654
No 332
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.59 E-value=0.068 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.|+|.|++|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 333
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.59 E-value=0.089 Score=53.13 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=33.7
Q ss_pred cchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 188 VGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
|..-.-+..+..++.. -+..+.+.|+|++|.||||+|.++++.+..
T Consensus 39 ~~~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 39 IEFITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CCHHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344556667777652 233456899999999999999999988754
No 334
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.58 E-value=0.066 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
....|+|+|++|+||||+|+.+..+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999886
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.55 E-value=0.064 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+|+|.|++|+||||+|+.+..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988764
No 336
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.54 E-value=0.053 Score=55.78 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
..++|+|+|+.|+|||||++.+......
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3468999999999999999999887654
No 337
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.52 E-value=0.21 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEEccCCChhhHHHHHHHHH
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
++.|.|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999886544
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.50 E-value=0.05 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
++|+|.|++|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 339
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.47 E-value=0.047 Score=55.07 Aligned_cols=29 Identities=41% Similarity=0.608 Sum_probs=24.5
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCC
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFE 237 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1137)
++++|.|+.|+|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 57899999999999999999987654443
No 340
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.43 E-value=0.098 Score=59.90 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=37.1
Q ss_pred CccchhhHHHHHHHhhccC------------CCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 186 GLVGLNSRIECIKSLLCVG------------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
.++|.+...+.+...+... ....+-|.++|++|+||||+|++++..+...|
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 5788888777776555210 11245688999999999999999999875443
No 341
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.42 E-value=0.089 Score=54.21 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=25.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
..+|+|.|+.|+||||+|+.+.+++...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999876443
No 342
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.40 E-value=0.073 Score=54.29 Aligned_cols=26 Identities=38% Similarity=0.385 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHH
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45689999999999999999999875
No 343
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.39 E-value=0.072 Score=56.64 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=24.1
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999988654
No 344
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.39 E-value=0.069 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.8
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+|+|.|++|+||||+|+.+..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 345
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.34 E-value=0.076 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.1
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+|+|.|++|+||||+|+.+..++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 346
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.31 E-value=0.074 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEEccCCChhhHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
.+++|.|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.25 E-value=0.077 Score=54.14 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=23.1
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+|+|.|++|+||||+|+.+..++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988763
No 348
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.25 E-value=0.15 Score=56.34 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=44.4
Q ss_pred chhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHh
Q 046314 189 GLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLL 267 (1137)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~ 267 (1137)
|...-+..|..++. +-..-.++.|.|.+|+||||+|..++.....+=..+.|+. -.-...++...+++...
T Consensus 28 gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-------lEms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-------LEMSAEQLALRALSDLT 98 (338)
T ss_dssp SBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-------SSSCHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-------CCCCHHHHHHHHHHHhh
Confidence 33333344444442 3233468899999999999999999887654333455543 23455666666666544
No 349
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.19 E-value=0.62 Score=54.13 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=34.6
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCC-ceEEEeeccchhccCcChHHHHHHHHH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFE-GNCFIENVREEIENGVGLVHLHKQVVS 264 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~~s~~~~~~~l~~~ll~ 264 (1137)
.-.++.|.|.+|+||||||..++..+..... .++|+. ......++...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s-------~E~s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS-------LEMSAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE-------SSSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-------CCCCHHHHHHHHHH
Confidence 3468999999999999999999987754322 455543 22334555555544
No 350
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.16 E-value=0.055 Score=55.44 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..++|+|+|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988764
No 351
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.16 E-value=0.077 Score=55.27 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+|+|+|+.|+||||+|+.+...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.13 E-value=0.08 Score=53.52 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.5
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
+|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 353
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.11 E-value=0.094 Score=54.08 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.+.++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999998865
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.08 E-value=0.084 Score=56.43 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=23.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 355
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.99 E-value=0.09 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
...+|+|.|+.|+||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998763
No 356
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.98 E-value=0.22 Score=55.79 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 195 ECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
.++...+.....+..+|+|+|.+|+|||||+..+...+...
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 33444443334567899999999999999999998876543
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.95 E-value=0.073 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...|+|.|++|+||||+|+.++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988764
No 358
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.94 E-value=0.077 Score=54.26 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.9
Q ss_pred EEEEEccCCChhhHHHHHHHH
Q 046314 210 IVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
+|+|.|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 359
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.86 E-value=0.14 Score=51.60 Aligned_cols=88 Identities=17% Similarity=0.043 Sum_probs=42.2
Q ss_pred ccCCCCCcEeccccc-cccc----ccccccCCCCCcceecccCccccccCc-hhhccccccccccCCCCCCCEEeecCCC
Q 046314 772 ICKLKSLIWLCLNEC-LNLE----KSWSELGNLKSFQYIGAHGSTISQLPH-LLSHLVSLHASLLSGLSSLNWLNLNNCA 845 (1137)
Q Consensus 772 l~~l~~L~~L~L~~~-~~~~----~~~~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~~~l~~l~~L~~L~Ls~n~ 845 (1137)
+.+-++|++|+|++| .+.. .+.+.+..-+.|+.|+|++|.|..--. .+.. .+..-++|++|+|++|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~-------aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-------LIETSPSLRVLNVESNF 109 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-------HHHHCSSCCEEECCSSB
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH-------HHhcCCccCeEecCCCc
Confidence 344567777887765 3322 233445555566666666665542100 0000 01123455555555555
Q ss_pred CCC-----cccccCCCCCCCEEEccC
Q 046314 846 LTA-----IPEEIGCLPSLEWLELRG 866 (1137)
Q Consensus 846 l~~-----lp~~l~~l~~L~~L~Ls~ 866 (1137)
|.+ +-+.+..-+.|++|+|++
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCC
Confidence 553 334444445555555554
No 360
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.84 E-value=0.1 Score=53.72 Aligned_cols=27 Identities=41% Similarity=0.479 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...+|+|.|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988654
No 361
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.82 E-value=0.071 Score=53.98 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
..++|+|+|+.|+|||||++.+......
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 4578999999999999999999876543
No 362
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.80 E-value=0.09 Score=53.93 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=23.0
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
....+|+|+|++|.||||+|+.+...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999987643
No 363
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.77 E-value=0.085 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.8
Q ss_pred EEEEEEccCCChhhHHHHHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.+++|.|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 364
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.76 E-value=0.29 Score=56.79 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=41.2
Q ss_pred HHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEEeeccchhccCcChHHHHHHHHHHH
Q 046314 195 ECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFIENVREEIENGVGLVHLHKQVVSLL 266 (1137)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l 266 (1137)
..|..++ .+-..-.++.|.|.+|+||||+|..++..+... =..++|+. -.....++...+++..
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-------lE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-------LEMPAAQLTLRMMCSE 252 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-------SSSCHHHHHHHHHHHH
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-------CCCCHHHHHHHHHHHH
Confidence 3444444 333344689999999999999999999876543 23455543 2344556666665544
No 365
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.71 E-value=0.092 Score=53.98 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.4
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999877543
No 366
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.71 E-value=0.14 Score=56.16 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=29.3
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
++.++|+|.|-||+||||.|..++.-+...=..+..++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46799999999999999999999887765444444443
No 367
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.69 E-value=0.26 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.1
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.+||.|++|+||||+|+.+.+++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998876
No 368
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.64 E-value=0.22 Score=54.10 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
..++|+++|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987753
No 369
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.62 E-value=0.095 Score=55.46 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.2
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+|+|+|+.|+|||||++.+++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997763
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.62 E-value=0.21 Score=50.41 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.5
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987744
No 371
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.61 E-value=0.44 Score=54.33 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=25.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
..++++++|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999877655
No 372
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.60 E-value=0.17 Score=54.84 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 373
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.57 E-value=0.091 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.4
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998865
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.54 E-value=0.12 Score=51.68 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=23.6
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
..+|+|.|+.|+||||+|+.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999987643
No 375
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.54 E-value=0.15 Score=53.00 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..-.+++|+|..|+|||||++.++....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987543
No 376
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.53 E-value=0.095 Score=53.68 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEEccCCChhhHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 377
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.50 E-value=0.1 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 378
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.48 E-value=0.22 Score=52.27 Aligned_cols=47 Identities=21% Similarity=0.242 Sum_probs=31.7
Q ss_pred HHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc------cCCceEEEe
Q 046314 197 IKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN------EFEGNCFIE 243 (1137)
Q Consensus 197 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 243 (1137)
|..+|..+-..-.+++|.|.+|+||||||+.++..... .-..++|+.
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 44444322233468999999999999999999885322 134566765
No 379
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.47 E-value=0.081 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.3
Q ss_pred CeEEEEEEccCCChhhHHHHHH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKAL 228 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v 228 (1137)
.-.+++|+|+.|.|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999964
No 380
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.46 E-value=0.68 Score=53.87 Aligned_cols=28 Identities=36% Similarity=0.377 Sum_probs=24.0
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhccCC
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNEFE 237 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1137)
.+.|.|.+|.||||++..+...+...-.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999987755443
No 381
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.43 E-value=0.16 Score=58.31 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=27.7
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
..++|+|+|.+|+||||+|..++..+..+-..+.++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 457899999999999999999998765442334444
No 382
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.40 E-value=0.61 Score=54.41 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=24.6
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
...++|+|+|.+|+||||++..++..+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 347899999999999999999999877654
No 383
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.23 E-value=1.7 Score=49.22 Aligned_cols=48 Identities=19% Similarity=0.085 Sum_probs=33.8
Q ss_pred CCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 185 KGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..++|....++++.+.+..-.+.-..|.|.|.+|+|||++|+.+...-
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 357777777777766554322222235899999999999999987754
No 384
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.21 E-value=0.15 Score=54.07 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...+|.|.|++|+||||+|+.+..++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999988764
No 385
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.21 E-value=0.11 Score=62.82 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=42.4
Q ss_pred CCCCCCccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 181 SDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
+...++++|.+.-++.+...+..+ ..+.|+|++|+||||||+.++..+....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 344467899999998888887644 4789999999999999999999765444
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.11 E-value=0.1 Score=54.38 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
...|+|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998865
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.10 E-value=0.11 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.08 E-value=0.086 Score=54.78 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=23.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 389
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.04 E-value=0.21 Score=57.29 Aligned_cols=53 Identities=25% Similarity=0.284 Sum_probs=35.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhc-cCCceEEEeeccchhccCcChHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSN-EFEGNCFIENVREEIENGVGLVHLHKQVVS 264 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~ 264 (1137)
-+.++|.|.+|+|||+|+.++.+.+.. +-+.++|. -+++ +.....++.+++..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGE---R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGE---RTREGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESC---CSHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-Eccc---CcHHHHHHHHhhhc
Confidence 356899999999999999999998754 33555554 4443 22334556666554
No 390
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.00 E-value=0.088 Score=55.68 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.6
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+|+|+|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.96 E-value=0.14 Score=52.59 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...+|.|.|+.|+||||+|+.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999998765
No 392
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.95 E-value=0.52 Score=53.88 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=34.8
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEEeeccchhccCcChHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFIENVREEIENGVGLVHLHKQVVS 264 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~s~~~~~~~l~~~ll~ 264 (1137)
-+.++|.|.+|+|||+|+..+.+.+... -+.++|. -+++ +...+.++.+++..
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGE---R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGE---RTREGNDLYHEMIE 206 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESC---CHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCC---cchHHHHHHHHhhh
Confidence 3678999999999999999999987443 3444443 3433 12234455555544
No 393
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.92 E-value=0.16 Score=53.56 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=28.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
-.++.|.|.+|+||||||.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999998876654444566654
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.91 E-value=0.11 Score=55.12 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.2
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+|+|.|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999998764
No 395
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.90 E-value=1.5 Score=47.20 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=32.6
Q ss_pred chHHHHHHhhhcceeEEEeccccccchhhHHHHHHHHHhhhcCCCeEEEEEeecCc
Q 046314 52 ISPALMKAIEGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSP 107 (1137)
Q Consensus 52 ~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~~~~~~~~~~~v~pvfy~v~p 107 (1137)
....+.+.++++.+.|.|+.-.-..+..+ .++.+.+ .+..++-|+-++|-
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-----~~kp~ilVlNK~DL 62 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-----KNKPRIMLLNKADK 62 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-----SSSCEEEEEECGGG
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-----CCCCEEEEEECccc
Confidence 34578889999999999998665555554 2444443 33455666666653
No 396
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.83 E-value=0.24 Score=51.15 Aligned_cols=46 Identities=26% Similarity=0.234 Sum_probs=32.8
Q ss_pred chhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 189 GLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
+.+...+++...+.. ...++|+|+|.+|+|||||+..+.......+
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~ 58 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNEV 58 (221)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTTS
T ss_pred hcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccCC
Confidence 334445555554432 3578999999999999999999988765543
No 397
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.83 E-value=0.13 Score=56.65 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.8
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 398
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.74 E-value=0.42 Score=53.02 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=28.5
Q ss_pred HHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 194 IECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
+..|..++-.+ .-+.++|.|.+|+|||+|+.++++.+...
T Consensus 163 iraID~l~Pig--rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 163 TRLIDLFAPIG--KGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp HHHHHHHSCCB--TTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred chhhhhccccc--CCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 33444444333 23578999999999999999999977543
No 399
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.74 E-value=0.072 Score=54.88 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.5
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhc
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987753
No 400
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.69 E-value=0.15 Score=53.86 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
....+|||.|..|.||||||+.+...+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998765
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.67 E-value=0.11 Score=53.78 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.9
Q ss_pred EEEEEEccCCChhhHHHHHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.66 E-value=0.14 Score=55.47 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=22.2
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHH
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999983
No 403
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.65 E-value=0.3 Score=56.46 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=35.7
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHH
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSL 265 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 265 (1137)
..-.++.|.|.+|+||||+|..++.....+=..++|+. -.-...++...+++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS-------lEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS-------LEMGKKENIKRLIVT 247 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC-------SSSCTTHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE-------CCCCHHHHHHHHHHH
Confidence 34568999999999999999999987655433455543 233444555555544
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.58 E-value=0.14 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.1
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+|+|.|+.|+||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988764
No 405
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.55 E-value=0.67 Score=47.16 Aligned_cols=111 Identities=14% Similarity=0.009 Sum_probs=54.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERL 286 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 286 (1137)
.-.+..++|.-|.||||.|...+.+...+-..++.+.... ...++.. .+.+.+........... ...+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~---d~R~ge~----~i~s~~g~~~~a~~~~~-~~~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI---DNRYSEE----DVVSHNGLKVKAVPVSA-SKDIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSS-GGGGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc---CCcchHH----HHHhhcCCeeEEeecCC-HHHHHHHH
Confidence 3478899999999999999998887765544444443111 1111111 23333311111000011 11122233
Q ss_pred cCCceEEEEeCCCC--HHHHHHHhcccCCCCCCCEEEEEeCChh
Q 046314 287 RRTKVFFVLDDVSK--FEQLKYFVGWLHGFCPGSRIVVTTRDKQ 328 (1137)
Q Consensus 287 ~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1137)
.++--+|++|.+.- .++++.+.... ..|-.||+|-++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 33334999999843 34554433211 13779999999643
No 406
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.54 E-value=0.16 Score=55.74 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.6
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
....+|||.|..|+|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4568999999999999999999988654
No 407
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.54 E-value=0.1 Score=53.17 Aligned_cols=25 Identities=48% Similarity=0.602 Sum_probs=22.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987654
No 408
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.53 E-value=0.12 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=22.1
Q ss_pred EEEEEEccCCChhhHHHHHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..|+|.|+.|+||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998876
No 409
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.38 E-value=0.2 Score=54.60 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=27.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
...+|+|+|++|+||||+++.++..+... .+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEE
Confidence 45799999999999999999999876544 334444
No 410
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.34 E-value=0.42 Score=49.41 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=28.9
Q ss_pred HHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 194 IECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
.+++...+. ......|+|+|.+|+|||||+..+.......
T Consensus 26 a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344444442 2356889999999999999999998875444
No 411
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.31 E-value=0.16 Score=52.43 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.21 E-value=0.16 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.2
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 413
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.18 E-value=0.16 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.0
Q ss_pred EEEEEccCCChhhHHHHHHHHHh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 414
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.04 E-value=0.24 Score=55.65 Aligned_cols=32 Identities=34% Similarity=0.319 Sum_probs=25.7
Q ss_pred hccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 201 LCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 201 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+..+-...++++|+|++|.|||||++.++...
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33344456799999999999999999999754
No 415
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.00 E-value=0.16 Score=52.83 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=23.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..+|+|.|++|.||||+|+.++.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988763
No 416
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.95 E-value=0.12 Score=56.84 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
..++|.|+|+.|+||||||..++.++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 346899999999999999999998653
No 417
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.95 E-value=0.15 Score=55.85 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.6
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
++|.|+|+.|+||||||+.++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 418
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.93 E-value=0.36 Score=53.30 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=32.0
Q ss_pred HHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhcc------CCceEEEe
Q 046314 197 IKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNE------FEGNCFIE 243 (1137)
Q Consensus 197 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 243 (1137)
|..+|..+-..-.++.|+|.+|+||||||..++...... -..++|+.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344443222334689999999999999999998865332 23566765
No 419
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.90 E-value=0.26 Score=47.96 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.8
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..-.+++|.|..|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345789999999999999999999876
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.89 E-value=0.16 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=23.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 421
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.88 E-value=0.15 Score=52.18 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
-.+++|+|+.|.|||||++.+.....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999987653
No 422
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.76 E-value=0.12 Score=56.19 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=20.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+..+|+|.|..|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 423
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.72 E-value=0.23 Score=52.41 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=26.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh-ccCCceEEEe
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS-NEFEGNCFIE 243 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 243 (1137)
.-.+++|.|+.|+|||||++.++.... ..-..+.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 346899999999999999999985332 2333444543
No 424
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.62 E-value=0.31 Score=56.95 Aligned_cols=49 Identities=6% Similarity=-0.054 Sum_probs=34.2
Q ss_pred CccchhhHHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 186 GLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
..+.|.+-.+.+.+..........+|.+.|+.|.||||+|++++.++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3444544455555544211234578999999999999999999998864
No 425
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.57 E-value=0.73 Score=55.06 Aligned_cols=33 Identities=27% Similarity=0.210 Sum_probs=25.9
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEE
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCF 241 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 241 (1137)
+++.|.|.+|.||||++..+...+...-..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 688899999999999999998876554333333
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.49 E-value=0.19 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.4
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.++|+|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998765
No 427
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.41 E-value=0.28 Score=48.62 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.9
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
.++++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 428
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.30 E-value=0.18 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.5
Q ss_pred EEEEEccCCChhhHHHHHHHHHhh
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
+++|+|..|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988654
No 429
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.28 E-value=0.16 Score=52.56 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=22.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998755
No 430
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.28 E-value=0.76 Score=52.62 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999988754
No 431
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.18 E-value=0.13 Score=50.87 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.4
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
++++|+|..|.|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999998876543
No 432
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.16 E-value=0.4 Score=56.81 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=25.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
.-.+|+|+|+.|.|||||++.++..+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 34789999999999999999999987643
No 433
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.15 E-value=0.52 Score=51.25 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=28.1
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccCC-ceEEEe
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEFE-GNCFIE 243 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~ 243 (1137)
.-.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3468999999999999999999987655433 344543
No 434
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.03 E-value=0.64 Score=50.52 Aligned_cols=47 Identities=17% Similarity=0.045 Sum_probs=31.0
Q ss_pred HhhhcceeEEEeccccccchhhHHHHHHHHHhhhcCCCeEEEEEeecCc
Q 046314 59 AIEGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSP 107 (1137)
Q Consensus 59 ~i~~s~~~i~v~S~~y~~s~~c~~el~~~~~~~~~~~~~v~pvfy~v~p 107 (1137)
++......++|++-+...... +.+..++...+..+..++-|+-+.|-
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~--~~i~r~L~~~~~~~~~~vivlnK~DL 129 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFST--ALLDRFLVLVEANDIQPIICITKMDL 129 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCH--HHHHHHHHHHHTTTCEEEEEEECGGG
T ss_pred HHHhCCEEEEEEeCCCCCCCH--HHHHHHHHHHHHCCCCEEEEEECCcc
Confidence 688889999999977543332 34555554444556667777777764
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.96 E-value=0.22 Score=52.26 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
....+|+|.|+.|.||||+++.+..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998865
No 436
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.94 E-value=0.37 Score=51.24 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=24.3
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998776
No 437
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.93 E-value=0.22 Score=53.81 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
..++|.|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998875
No 438
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.92 E-value=0.33 Score=53.10 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=28.8
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
...++|+|+|-||+||||+|..++..+...=..++.++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35688999999999999999999987765533444443
No 439
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.91 E-value=0.25 Score=54.19 Aligned_cols=28 Identities=32% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
....+|||.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988665
No 440
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.85 E-value=0.44 Score=49.64 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
....|+|.|+.|+||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 441
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.63 E-value=0.34 Score=51.22 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=30.3
Q ss_pred HHHHHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 193 RIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 193 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
-..-+..++....+....|.++|++|.|||.+|.++++..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3445677776442445679999999999999999998853
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.62 E-value=0.24 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEEEccCCChhhHHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 443
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.57 E-value=0.26 Score=51.93 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=26.6
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHh-hccCCceEEEe
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQV-SNEFEGNCFIE 243 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~ 243 (1137)
.-.++.|.|.+|+|||++|.+++... ...-..++|+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 34688999999999999999987653 33334455543
No 444
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.54 E-value=0.65 Score=47.65 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
...|.|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999988654
No 445
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.53 E-value=0.23 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=23.2
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988765
No 446
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.43 E-value=0.39 Score=51.30 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=27.1
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
++|+|.|-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999988765533444443
No 447
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.40 E-value=0.22 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=21.6
Q ss_pred EEEEEEccCCChhhHHHHHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+.|.|.|.+|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 668999999999999999998764
No 448
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=88.39 E-value=0.68 Score=64.63 Aligned_cols=138 Identities=11% Similarity=0.080 Sum_probs=68.8
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCccccCCCCCccHHHHHhhcC
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIEMGGPNIPAYTLERLRR 288 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 288 (1137)
+-|.++|++|.|||++|+.+..... .+. ...+. .+...+...+++.+-..+...... .+. .. .-.-.+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~-~~~-~~~in-----fsa~ts~~~~~~~i~~~~~~~~~~-~g~-~~---~P~~~g 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS-LYD-VVGIN-----FSKDTTTEHILSALHRHTNYVTTS-KGL-TL---LPKSDI 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS-SCE-EEEEE-----CCTTCCHHHHHHHHHHHBCCEEET-TTE-EE---EEBSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC-CCc-eEEEE-----eecCCCHHHHHHHHHHHhhhcccc-CCc-cc---cCCCCC
Confidence 5688999999999999988766532 222 22232 333344455555444332211100 000 00 000146
Q ss_pred CceEEEEeCCCCH--------HHHHHHhcccCCC-----CC-------CCEEEEEeCChh------hHHhhCCCCccEEE
Q 046314 289 TKVFFVLDDVSKF--------EQLKYFVGWLHGF-----CP-------GSRIVVTTRDKQ------VLRKHGVNDEYVYE 342 (1137)
Q Consensus 289 kr~LlVLDdv~~~--------~~l~~l~~~~~~~-----~~-------gsrIIiTTR~~~------v~~~~~~~~~~~~~ 342 (1137)
++.++.+||++-+ ..++.+...+... .. +..+|.++-... +-... .....++.
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl-lRrf~vi~ 1414 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF-TRHAAILY 1414 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH-HTTEEEEE
T ss_pred ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh-hheeeEEE
Confidence 7888999997432 2233332222111 11 123444443221 11111 11223789
Q ss_pred EccCCHHHHHHHHHhhc
Q 046314 343 VERLNEDEGLELFYKYA 359 (1137)
Q Consensus 343 v~~L~~~ea~~Lf~~~a 359 (1137)
++.++.++-.++|....
T Consensus 1415 i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCCCTTTHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999888887654
No 449
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.30 E-value=0.17 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=16.4
Q ss_pred eEEEEEEccCCChhhHHHHHHH-HHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALF-NQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~-~~~ 232 (1137)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 450
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.28 E-value=0.4 Score=52.08 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=25.2
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
..++++|+|.+|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999877654
No 451
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.24 E-value=1.6 Score=51.41 Aligned_cols=55 Identities=7% Similarity=-0.044 Sum_probs=38.1
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEEeeccchhccCcChHHHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFIENVREEIENGVGLVHLHKQVVSLLL 267 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~ 267 (1137)
..-.++.|.|.+|+||||+|.+++.....+ =..++|+. -.....++...+++...
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s-------~E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM-------LEESVEETAEDLIGLHN 295 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE-------SSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe-------ccCCHHHHHHHHHHHHc
Confidence 344688999999999999999999887655 33456654 23345566666655443
No 452
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.17 E-value=0.42 Score=53.31 Aligned_cols=34 Identities=38% Similarity=0.430 Sum_probs=26.9
Q ss_pred HhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 199 SLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 199 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.+|..+-..-.++.|+|.+|+|||||++.++...
T Consensus 122 ~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 122 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3443333456899999999999999999998866
No 453
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.15 E-value=0.39 Score=49.39 Aligned_cols=27 Identities=19% Similarity=0.036 Sum_probs=22.7
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347789999999999999999876544
No 454
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.02 E-value=0.23 Score=50.85 Aligned_cols=23 Identities=48% Similarity=0.294 Sum_probs=20.7
Q ss_pred EEEEEEccCCChhhHHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.+++|+|+.|.|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998864
No 455
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.93 E-value=0.7 Score=51.35 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCCeEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 205 FPDVRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
..+..+|+|+|.+|+|||||+..+...+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3567899999999999999999998766543
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.79 E-value=0.29 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
...|+|.|..|+||||+|+.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 457
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.65 E-value=0.7 Score=50.90 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 196 CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.|..+|..+-..-.++.|.|.+|+||||||..++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444553232345799999999999999999998753
No 458
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.59 E-value=0.47 Score=48.39 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=25.9
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCc
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEG 238 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 238 (1137)
+.|+|-|.-|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 578999999999999999999988765543
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.57 E-value=0.44 Score=56.19 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=25.8
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
...+|.++|++|.||||+|++++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 457899999999999999999998875544
No 460
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.54 E-value=0.65 Score=62.53 Aligned_cols=48 Identities=33% Similarity=0.427 Sum_probs=35.4
Q ss_pred HHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 196 CIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 196 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
+|..+|. .+-...+.|.|+|++|+|||+||.+++.....+=..+.|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3445554 22234678999999999999999999987766655667765
No 461
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=87.46 E-value=2 Score=47.59 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.+++|+|.+|+|||||++.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999988753
No 462
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.37 E-value=0.28 Score=51.44 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.2
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHH
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.. .+++|+|+.|.|||||.+.++--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999999763
No 463
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.25 E-value=0.48 Score=51.27 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=26.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
.++|+|.|-||+||||+|..++..+..+=..+..+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 36788899999999999999998776543334444
No 464
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.17 E-value=0.33 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.7
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998764
No 465
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.11 E-value=0.5 Score=50.89 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.1
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
-.+++|+|.+|+||||||..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 358999999999999999999876543
No 466
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.06 E-value=0.74 Score=51.01 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=25.3
Q ss_pred CCCeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 205 FPDVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
-....+++|+|.+|+|||||.+.+...+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 345689999999999999999999876543
No 467
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.04 E-value=0.26 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.6
Q ss_pred eEEEEEEccCCChhhHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
-.+++|+|+.|.|||||++.+.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999865
No 468
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.00 E-value=0.26 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEEEccCCChhhHHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.+++|+|+.|.|||||.+.++--
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998753
No 469
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.84 E-value=0.29 Score=61.23 Aligned_cols=54 Identities=28% Similarity=0.351 Sum_probs=41.4
Q ss_pred CCCCccchhhHHHHHHHhhccC-----------CCCeEEEEEEccCCChhhHHHHHHHHHhhccC
Q 046314 183 SSKGLVGLNSRIECIKSLLCVG-----------FPDVRIVGIWGMGGIGKTTLAKALFNQVSNEF 236 (1137)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1137)
.-++++|.+...++|.+.+... -...+.+.++|++|+||||||++++......|
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3466889999988888876421 12345688999999999999999999875444
No 470
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.75 E-value=0.34 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
..-.|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999999874
No 471
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.65 E-value=0.9 Score=45.98 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=26.9
Q ss_pred EEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 210 IVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
.|+|-|.-|+||||.++.+++.+..+-..+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478999999999999999999887665445544
No 472
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.62 E-value=0.83 Score=60.74 Aligned_cols=93 Identities=25% Similarity=0.241 Sum_probs=56.5
Q ss_pred HHHHhhcc-CCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEeeccchhccCcChHHHHHHHHHHHhCcccc--
Q 046314 196 CIKSLLCV-GFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSLLLGERIE-- 272 (1137)
Q Consensus 196 ~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~-- 272 (1137)
.|-.+|.. +-+.-++|-|+|+.|+||||||..+....+.+=..++|++ .....+... ++.+...-..
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~-----~e~~~~~~~-----~~~~Gv~~~~l~ 1487 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-----AEHALDPIY-----ARKLGVDIDNLL 1487 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-----TTSCCCHHH-----HHHTTCCGGGCE
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe-----cCCCCCHHH-----HHHcCCCHHHeE
Confidence 34445542 2244579999999999999999999988887878888886 333333332 4444332211
Q ss_pred ----CCCCCccHHHHHhhc-CCceEEEEeCC
Q 046314 273 ----MGGPNIPAYTLERLR-RTKVFFVLDDV 298 (1137)
Q Consensus 273 ----~~~~~~~~~l~~~L~-~kr~LlVLDdv 298 (1137)
..+++.+......++ +..-+||+|-|
T Consensus 1488 ~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1488 CSQPDTGEQALEICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred EeCCCcHHHHHHHHHHHHHcCCCCEEEEccH
Confidence 112222333334443 44558888887
No 473
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.49 E-value=0.4 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEEccCCChhhHHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998763
No 474
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.47 E-value=0.29 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHh
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
-.+++|+|..|.|||||++.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997643
No 475
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.43 E-value=0.69 Score=47.92 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhcc
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNE 235 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1137)
...|.|.|+.|+||||+++.+++++...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4589999999999999999999987654
No 476
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.42 E-value=0.86 Score=46.99 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHHhhc
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQVSN 234 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1137)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999998765
No 477
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=86.34 E-value=0.39 Score=48.89 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=23.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVS 233 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1137)
.+|+|.|+.|.||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999875
No 478
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.22 E-value=0.35 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEEccCCChhhHHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.+++|+|..|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 479
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.21 E-value=0.3 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEEccCCChhhHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
.+++|+|+.|.|||||++.+.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999865
No 480
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.21 E-value=0.44 Score=46.48 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEEccCCChhhHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 481
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=86.08 E-value=1.1 Score=47.74 Aligned_cols=48 Identities=6% Similarity=-0.052 Sum_probs=31.0
Q ss_pred chHHHHHHhhhcceeEEEeccccccchhhHHHHHHHHHhhhcCCCeEEEEEeecCc
Q 046314 52 ISPALMKAIEGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSP 107 (1137)
Q Consensus 52 ~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~~~~~~~~~~~v~pvfy~v~p 107 (1137)
....+.+.++.+.+.|.|++-.-..+..+. ++. ++ +..++-|+-+.|-
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~~-~l~-ll------~k~~iivlNK~DL 58 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSAY-GVD-FS------RKETIILLNKVDI 58 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSCT-TSC-CT------TSEEEEEEECGGG
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-HHH-hc------CCCcEEEEECccC
Confidence 345888999999999999986655444442 222 22 3456666666653
No 482
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.99 E-value=0.32 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCChhhHHHHHHHHH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.-.+++|+|+.|.|||||.+.++--
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998753
No 483
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=85.97 E-value=3.2 Score=47.18 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=27.9
Q ss_pred hHHHHHHHhhcc---CCCCeEEEEEEccCCChhhHHHHHHHH
Q 046314 192 SRIECIKSLLCV---GFPDVRIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 192 ~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
.-+..|+..+.. .....++..|.|.+|.||||+.++.++
T Consensus 142 ~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 142 AKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp HHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 334455555422 224678999999999999999988764
No 484
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.93 E-value=0.37 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChhhHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
-.+++|+|..|.|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998864
No 485
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.92 E-value=0.32 Score=51.95 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChhhHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
-.+++|+|+.|.|||||++.++.-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999998753
No 486
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.89 E-value=0.32 Score=51.37 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=25.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhccCCceEEE
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFI 242 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1137)
.+++|+|+.|.|||||.+.++--+... +.+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 579999999999999999988755443 44444
No 487
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.84 E-value=0.36 Score=54.88 Aligned_cols=36 Identities=25% Similarity=0.187 Sum_probs=26.5
Q ss_pred HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHH
Q 046314 196 CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
++.+.|........+++|+|..|+|||||.+.+...
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 344444322245679999999999999999999863
No 488
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.83 E-value=0.33 Score=51.00 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEEEccCCChhhHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
.+++|+|+.|.|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 489
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.75 E-value=0.36 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCChhhHHHHHHHH
Q 046314 207 DVRIVGIWGMGGIGKTTLAKALFN 230 (1137)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1137)
.-.+++|+|..|.|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 490
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.74 E-value=0.9 Score=47.33 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=27.3
Q ss_pred eEEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEE
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFI 242 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 242 (1137)
...|.|.|+.|+||||+++.+.+.+... +..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4689999999999999999999987543 4424443
No 491
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.73 E-value=0.42 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChhhHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 492
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=85.73 E-value=0.29 Score=50.37 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.6
Q ss_pred EEEEEEccCCChhhHHHHHHHHH
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
.+++|+|+.|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998764
No 493
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.72 E-value=0.84 Score=51.68 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=31.1
Q ss_pred HHHHhhccCCCCeEEEEEEccCCChhhHHHHHHHHHhhc------cCCceEEEe
Q 046314 196 CIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSN------EFEGNCFIE 243 (1137)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 243 (1137)
.|..+|..+-..-.++.|.|.+|+|||||+..++-.... .-..++|+.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 444455333233468999999999999999987643321 223466765
No 494
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.69 E-value=0.62 Score=47.29 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=26.6
Q ss_pred EEEEEE-ccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 209 RIVGIW-GMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 209 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
++|+|+ +-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578888 68999999999999988766434455544
No 495
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.68 E-value=0.34 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChhhHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
-.+++|+|+.|.|||||.+.++--
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998753
No 496
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.66 E-value=0.34 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChhhHHHHHHHHH
Q 046314 208 VRIVGIWGMGGIGKTTLAKALFNQ 231 (1137)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1137)
-.+++|+|+.|.|||||++.++--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 358999999999999999998753
No 497
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.57 E-value=0.35 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEEEccCCChhhHHHHHHHHHh
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
.+++|+|+.|.|||||.+.++.-+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999997643
No 498
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.53 E-value=1.3 Score=58.97 Aligned_cols=53 Identities=30% Similarity=0.367 Sum_probs=36.3
Q ss_pred hhHHHHHHHhhc-cCCCCeEEEEEEccCCChhhHHHHHHHHHhhccCCceEEEe
Q 046314 191 NSRIECIKSLLC-VGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIE 243 (1137)
Q Consensus 191 ~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1137)
..-+.+|..++. .+-..-.+|.|.|.+|+||||||.+++.....+-..+.|+.
T Consensus 714 ~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 714 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 333445555553 22234468999999999999999999987765444566654
No 499
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.52 E-value=0.41 Score=51.96 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCCChhhHHHHHHHHHh
Q 046314 206 PDVRIVGIWGMGGIGKTTLAKALFNQV 232 (1137)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1137)
+.-.+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999998765
No 500
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.48 E-value=1 Score=46.16 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=26.5
Q ss_pred EEEEEEccCCChhhHHHHHHHHHhhcc-CCceEEE
Q 046314 209 RIVGIWGMGGIGKTTLAKALFNQVSNE-FEGNCFI 242 (1137)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 242 (1137)
..|.+.|..|+||||+++.+.+.+... +..+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 478999999999999999999987544 3234443
Done!