BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046315
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|B Chain B, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|C Chain C, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|D Chain D, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|E Chain E, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|F Chain F, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSZ|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VT0|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT1|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT2|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
Length = 526
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 131 LPINYVSSVVIRLTEFSNL-----SNPFASAAPTTRRFRVVQAGCGKLLKQLESSRDKAR 185
LP+N++S + L + ++ S + P T R+++V GK+L L+ S D A
Sbjct: 326 LPLNFISDTTLELPYYDSVKIDASSGIISEYIPDTTRYKLVNKNSGKVLDVLDGSVDNA- 384
Query: 186 ARLQLINITKHGS 198
Q++ T +GS
Sbjct: 385 --AQIVQWTDNGS 395
>pdb|4ANM|A Chain A, Complex Of Ck2 With A Cdc7 Inhibitor
Length = 335
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Query: 73 TVIRILDLV-----KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQN 127
++++LD+V KTPSLIF+Y T L+ P L D D I+Y ++ ++ +L
Sbjct: 89 NIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY--PTLTDYD---IRYYIYE-LLKALDY 142
Query: 128 AHALPI 133
H+ I
Sbjct: 143 CHSQGI 148
>pdb|2PVH|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVJ|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVK|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVL|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVM|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVN|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|3BE9|A Chain A, Structure-Based Design And Synthesis Of Novel Macrocyclic
Pyrazolo[1,5-A] [1,3,5]triazine Compounds As Potent
Inhibitors Of Protein Kinase Ck2 And Their Anticancer
Activities
Length = 352
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 72 STVIRILDLV-----KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQ 126
++++LD+V KTPSLIF+Y T L+ P L D D I+Y ++ ++ +L
Sbjct: 107 PNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY--PTLTDYD---IRYYIYE-LLKALD 160
Query: 127 NAHALPI 133
H+ I
Sbjct: 161 YCHSQGI 167
>pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|B Chain B, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|C Chain C, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|D Chain D, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1F0Q|A Chain A, Crystal Structure Of The Alpha Subunit Of Protein Kinase
Ck2 In Complex With The Nucleotide Competitive Inhibitor
Emodin
pdb|1J91|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1J91|B Chain B, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1JAM|A Chain A, Crystal Structure Of Apo-Form Of Z. Mays Ck2 Protein
Kinase Alpha Subunit
pdb|1LP4|A Chain A, Crystal Structure Of A Binary Complex Of The Catalytic
Subunit Of Protein Kinase Ck2 With Mg-Amppnp
pdb|1LPU|A Chain A, Low Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1LR4|A Chain A, Room Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1OM1|A Chain A, Crystal Structure Of Maize Ck2 Alpha In Complex With Iqa
pdb|1ZOE|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives Inhibitors
pdb|1ZOG|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives
pdb|1ZOH|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives Inhibitors
pdb|2OXD|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole K17, K22 And K32 Inhibitors
pdb|2OXX|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|2OXY|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|2OXY|B Chain B, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|3PWD|A Chain A, Crystal Structure Of Maize Ck2 In Complex With Nbc (Z1)
Length = 332
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 72 STVIRILDLV-----KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQ 126
++++LD+V KTPSLIF+Y T L+ P L D D I+Y ++ ++ +L
Sbjct: 87 PNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY--PTLTDYD---IRYYIYE-LLKALD 140
Query: 127 NAHALPI 133
H+ I
Sbjct: 141 YCHSQGI 147
>pdb|1M2P|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro-
AnthraquinoneCK2 KINASE COMPLEX
pdb|4DGO|A Chain A, Crystal Structure Of Maize Ck2 In Complex With Tyrphostin
Ag99
Length = 325
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 72 STVIRILDLV-----KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQ 126
++++LD+V KTPSLIF+Y T L+ P L D D I+Y ++ ++ +L
Sbjct: 86 PNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY--PTLTDYD---IRYYIYE-LLKALD 139
Query: 127 NAHALPI 133
H+ I
Sbjct: 140 YCHSQGI 146
>pdb|2QC6|A Chain A, Protein Kinase Ck2 In Complex With Dbc
pdb|3FL5|A Chain A, Protein Kinase Ck2 In Complex With The Inhibitor
Quinalizarin
pdb|3PZH|A Chain A, Crystal Structure Of Maize Ck2 Alpha In Complex With
Emodin At 1.92 A Resolution
Length = 332
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 72 STVIRILDLV-----KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQ 126
++++LD+V KTPSLIF+Y T L+ P L D D I+Y ++ ++ +L
Sbjct: 87 PNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY--PTLTDYD---IRYYIYE-LLKALD 140
Query: 127 NAHALPI 133
H+ I
Sbjct: 141 YCHSQGI 147
>pdb|3PVG|A Chain A, Crystal Structure Of Z. Mays Ck2 Alpha Subunit In Complex
With The Inhibitor
4,5,6,7-Tetrabromo-1-Carboxymethylbenzimidazole (K68)
Length = 331
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 72 STVIRILDLV-----KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQ 126
++++LD+V KTPSLIF+Y T L+ P L D D I+Y ++ ++ +L
Sbjct: 86 PNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY--PTLTDYD---IRYYIYE-LLKALD 139
Query: 127 NAHALPI 133
H+ I
Sbjct: 140 YCHSQGI 146
>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Amppnp
pdb|1DAY|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Gmppnp
pdb|1M2Q|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro-Xanten-9-
OneCK2 KINASE COMPLEX
pdb|1M2R|A Chain A, Crystal Structure Of 5,8-Di-Amino-1,4-Di-Hydroxy-
AnthraquinoneCK2 KINASE COMPLEX
pdb|3KXM|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor K74
pdb|3KXN|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor Tetraiodobenzimidazole (K88)
Length = 327
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 72 STVIRILDLV-----KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQ 126
++++LD+V KTPSLIF+Y T L+ P L D D I+Y ++ ++ +L
Sbjct: 86 PNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY--PTLTDYD---IRYYIYE-LLKALD 139
Query: 127 NAHALPI 133
H+ I
Sbjct: 140 YCHSQGI 146
>pdb|3KXG|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor
3,4,5,6,7-Pentabromo-1h-Indazole (K64)
pdb|3KXH|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor
(2-Dymethylammino-4,5,6,7-Tetrabromobenzoimidazol-1yl-
Acetic Acid (K66)
Length = 327
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 72 STVIRILDLV-----KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQ 126
++++LD+V KTPSLIF+Y T L+ P L D D I+Y ++ ++ +L
Sbjct: 86 PNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY--PTLTDYD---IRYYIYE-LLKALD 139
Query: 127 NAHALPI 133
H+ I
Sbjct: 140 YCHSQGI 146
>pdb|4DGN|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The
Inhibitor Luteolin
Length = 326
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 72 STVIRILDLV-----KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQ 126
++++LD+V KTPSLIF+Y T L+ P L D D I+Y ++ ++ +L
Sbjct: 86 PNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY--PTLTDYD---IRYYIYE-LLKALD 139
Query: 127 NAHALPI 133
H+ I
Sbjct: 140 YCHSQGI 146
>pdb|4DGM|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The
Inhibitor Apigenin
Length = 326
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 72 STVIRILDLV-----KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQ 126
++++LD+V KTPSLIF+Y T L+ P L D D I+Y ++ ++ +L
Sbjct: 86 PNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY--PTLTDYD---IRYYIYE-LLKALD 139
Query: 127 NAHALPI 133
H+ I
Sbjct: 140 YCHSQGI 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,998,233
Number of Sequences: 62578
Number of extensions: 268710
Number of successful extensions: 744
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 20
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)