BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046315
(353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070 OS=Arabidopsis thaliana GN=At3g49070 PE=2
SV=1
Length = 416
Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 179/342 (52%), Positives = 239/342 (69%), Gaps = 21/342 (6%)
Query: 11 DVDVREEYAHAFRTESYNEFWTRVLALSNKDSAKSIQVESTTA------ARLSSYRLFAE 64
DVDVREEYA+AFRTESYN FWTRV+ LS K SA S S ARL SYRLFA
Sbjct: 68 DVDVREEYANAFRTESYNHFWTRVVQLSRKKSAVSSSSSSPPIESSSTSARLMSYRLFAH 127
Query: 65 QLLDPDQSTVIRILDLVK----TPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKV 120
LLDPD +T+ RILD+ + T +L+ DYF +TANA L LLK+I ++R KY S K
Sbjct: 128 NLLDPDLNTITRILDVSRVGRHTRTLLSDYFLETANAFLLCTQLLKNIHHLRSKYESLKP 187
Query: 121 IVNSLQNAHALPINYVSSVVIRLTEFSNLSNPFASAAPTTRRFRVVQAGCGKLLKQLESS 180
+S +N ++L +++ + TE S +PF S+ R +++++GC LLK+LES
Sbjct: 188 KFHS-ENHNSL------ALIDQFTEISKWFDPFISSGS---RIQLIRSGCLYLLKRLESR 237
Query: 181 RDKARARLQLINITKHGSATFLLAITISLTVIVASHALALLVAAPGLIAASLELASTR-R 239
RDK RA+L+LIN H S +LA+T +L V +ASHA AL +AAP L+A+ + A R +
Sbjct: 238 RDKTRAKLKLINGLTHSSGLLVLALTTTLIVTIASHAFALFLAAPTLLASQFKPAGLRNK 297
Query: 240 LVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEV 299
L + + +LD AAKGTYIL+RDLDTISRLV R+NDE+ H+R+ +FW+ RG R++ S EV
Sbjct: 298 LTKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNHVRAMAEFWVGRGSGRVRGSEEV 357
Query: 300 ARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEILD 341
AR+L + + SFS++LDELEEH+YLCFMT+NRARNL++KEILD
Sbjct: 358 ARELKRCEESFSEELDELEEHIYLCFMTINRARNLLVKEILD 399
>sp|A2XCJ1|U496C_ORYSI UPF0496 protein 3 OS=Oryza sativa subsp. indica GN=OsI_009784 PE=3
SV=2
Length = 378
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 195/351 (55%), Gaps = 34/351 (9%)
Query: 10 TDVDVREEYAHAFRTESYNEFWTRVLALSNKDSAKSIQVESTTAA-----RLSSYRLFAE 64
+ D REEY AFRTESYN+FW RVL ++ A + RL SYRLFAE
Sbjct: 30 SSFDFREEYTSAFRTESYNDFWARVLDITLAHGAALVPRHGGGGGCAASKRLPSYRLFAE 89
Query: 65 QLLDPDQSTVIRILDLVKTPSLIFD-------YFTQTANASLFFGPLLKDIDNVRIKYRS 117
LL+PDQ V L + L D Y+ +TANAS LLKDI+++R++YR
Sbjct: 90 HLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSHLLKDIEHIRLRYRP 149
Query: 118 FKVIVNSLQNAHALPINYVSSVVIRLTEFSNLSNPFASAAPTTRRFRVVQAGCGKLLKQL 177
K + L A + ++ ++ V + L PF + A + R R VQAG G LL+ L
Sbjct: 150 LKHTLRKL--ASDVGVSGLADVS------AALGQPFTALAASQGRLREVQAGSGDLLRGL 201
Query: 178 ESSRDKARARLQLINITKHG---SATFLLAITISLTVIVASHALALLVAAPGLIAASL-- 232
++ R KAR R++ + + S +A+ + + H LA A P + A L
Sbjct: 202 DAGRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILAAFAAFPMMSPAWLGE 261
Query: 233 ELASTRRLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDR---- 288
S R R QL+AAAKGTYILNRD++TISRLVAR+ DE EHM + ++ ++
Sbjct: 262 RFFSGRAARRALVQLEAAAKGTYILNRDMETISRLVARVRDEGEHMVALLRLCVEHRPAA 321
Query: 289 ---GEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVM 336
G+ RL EV RQL KN+ SF QQLDELEEHL+LCFMT+N+AR +VM
Sbjct: 322 GAGGKGRLVQ--EVLRQLSKNEESFRQQLDELEEHLFLCFMTINKARIMVM 370
>sp|Q10RR9|U496C_ORYSJ UPF0496 protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0148000
PE=2 SV=1
Length = 378
Score = 221 bits (562), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 193/351 (54%), Gaps = 34/351 (9%)
Query: 10 TDVDVREEYAHAFRTESYNEFWTRVLALSNKDSAKSIQVESTTAA-----RLSSYRLFAE 64
+ D REEY AFRTESYN+FW RVL ++ A + RL SYRLFAE
Sbjct: 30 SSFDFREEYTSAFRTESYNDFWARVLDITLAHGAALVPRHGGGGGCAASKRLPSYRLFAE 89
Query: 65 QLLDPDQSTVIRILDLVKTPSLIFD-------YFTQTANASLFFGPLLKDIDNVRIKYRS 117
LL+PDQ V L + L D Y+ +TANAS LLKDI+++R++YR
Sbjct: 90 HLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSHLLKDIEHIRLRYRP 149
Query: 118 FKVIVNSLQNAHALPINYVSSVVIRLTEFSNLSNPFASAAPTTRRFRVVQAGCGKLLKQL 177
K + L A + ++ ++ V + L PF + A + R R VQAG G LL+ L
Sbjct: 150 LKHTLRKL--ASDVGVSGLADVS------AALGQPFTALAASQGRLREVQAGSGDLLRGL 201
Query: 178 ESSRDKARARLQLINITKHG---SATFLLAITISLTVIVASHALALLVAAPGLIAASL-- 232
++ R KAR R++ + + S +A+ + + H LA A P + A L
Sbjct: 202 DAGRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILAAFAAFPMMSPAWLGE 261
Query: 233 ELASTRRLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDR---- 288
S R R QL+AAAKGTYILNRD++TISRLVAR+ DE EHM + + ++
Sbjct: 262 RFFSGRAARRALVQLEAAAKGTYILNRDMETISRLVARVRDEGEHMVALRRLCVEHRPAA 321
Query: 289 ---GEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVM 336
G+ RL EV RQL KN+ SF QQLDELEEHL+LCFMT N+AR +VM
Sbjct: 322 GAGGKGRLVQ--EVLRQLSKNEESFRQQLDELEEHLFLCFMTTNKARIMVM 370
>sp|Q6DYE5|U496K_ARATH UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2
SV=2
Length = 390
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 182/365 (49%), Gaps = 34/365 (9%)
Query: 10 TDVDVREEYAHAFRTESYNEFWTRV---LALSNKDSAKSIQVESTTAARLSSYRLFAEQL 66
+ + V EEY AFRT SY E T+ L +++ S ++++ LS + F + L
Sbjct: 32 SKLSVNEEYKEAFRTNSYLETRTKAEDQLGITSCSKLSSSSPSPSSSSDLSFHSHFTDYL 91
Query: 67 LDPDQSTVIRILDLVKTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIV---- 122
LDP Q T+ ++ +LI +F ++ A LL+ + ++I + K ++
Sbjct: 92 LDPPQETLDALMQDSSLDNLIVTFFDLSSEACDVCETLLQCLQQIKINHNKIKRVMKIGK 151
Query: 123 ---NSLQNAHALPINYVSSVVIRLTEFSNLSNPFASAAPTTRRFRVVQAGCGKLLKQLES 179
N + P + + L+ F+ L NP + FR+V LL +L S
Sbjct: 152 RVCNGAKTLECSPEMLCALIFQELSRFAALKNPLCRIVNEAQ-FRIVHDANSDLLTKLTS 210
Query: 180 SRDKARARLQLINITKH-GSATFLL---AITISLTVIVASHALALLVAAPGLIA-ASLEL 234
+ + R +++ K G + ++ AI I+L +I+A H++ + AAP L+ S L
Sbjct: 211 KKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITL-LIIALHSILGVFAAPALLGLCSFCL 269
Query: 235 ASTRR-------------LVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRST 281
++ L ++ TQ+D AAKG +IL DLDT+SRL RL DE+EH R T
Sbjct: 270 LRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFILINDLDTLSRLAGRLCDEIEH-RKT 328
Query: 282 VKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEILD 341
V + +++ E R+ ++ FS QL ELEEHLYLCF T+NR+R LV+ +I
Sbjct: 329 VAAMCAKSR-KIEVLKEALREFNGHEEKFSDQLQELEEHLYLCFHTINRSRRLVLAQI-- 385
Query: 342 PGQST 346
GQS+
Sbjct: 386 TGQSS 390
>sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2
SV=2
Length = 382
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 182/358 (50%), Gaps = 26/358 (7%)
Query: 1 SSADISSQRTDVDVREEYAHAFRTESYNEFWTRVLALSNKDSAKSIQVESTTAARLSSYR 60
S D S ++ E AHAF+T SY++ +RV + + ++ LS
Sbjct: 34 SRNDASISSPTFNLSRELAHAFQTPSYHDVRSRVHVVVDLTQIHHRLIQPDIELLLS--- 90
Query: 61 LFAEQLLDPDQSTV---IRILDLVKTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRS 117
Q+L P++ V IR + +L+ YF + +A+ L +++ + R +
Sbjct: 91 ----QVLQPNKECVQEAIRHVKQTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARHHLYT 146
Query: 118 FKVIVNSLQNAHALP------INYVSSVVIRLTEFSNLSNPFASAAPTTRRFRVVQAGCG 171
+ + ++ +LP + V ++L F N PF+S P + FR Q
Sbjct: 147 PLLDLFNIFPGDSLPAIDESLCDLAFDVFLKLDTFEN---PFSS--PESYSFRDTQLCFS 201
Query: 172 KLLKQLESSRDKARARLQLINITKHGSATFLLAITISLTVI---VASHALA-LLVAAPGL 227
+L L+ K+R+R++LI+ GS+ L+A +++ +ASHAL LLV A L
Sbjct: 202 QLKHNLDRRLRKSRSRVRLIHHATAGSSLCLVAAVVAVAASAVVIASHALPILLVVAGPL 261
Query: 228 IAASLELASTRRLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLD 287
+ L + R+ + QL+AA+KGT++LN+DLDTI RLV+RL+ +E+ + ++ L+
Sbjct: 262 CSPYLPHSFKRKELTNICQLNAASKGTFVLNKDLDTIDRLVSRLHTGIEYDKFLIRLGLE 321
Query: 288 RGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEILDPGQS 345
RG + + E+ + L K+ + QL +LE+H+ L F VN+AR+L++ EI P S
Sbjct: 322 RGR-DVHSIQEILKLLRKSHLPLTHQLKDLEDHICLWFTNVNKARSLLLTEIHLPRPS 378
>sp|Q9LJK4|U496L_ARATH UPF0496 protein At3g19250 OS=Arabidopsis thaliana GN=At3g19250 PE=2
SV=1
Length = 360
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 174/345 (50%), Gaps = 36/345 (10%)
Query: 13 DVREEYAHAFRTESYNEFWTRVLALSNKDSAKSIQVESTTAARLSSYRLFAEQLLDPDQS 72
++ E AHAF+T SY++ +R+L + D + + LF Q L P+
Sbjct: 35 NLSHELAHAFQTPSYHDIRSRLLVI---DPTQE------------NLELFLSQELRPNNE 79
Query: 73 TVIRILDL-----VKTPSLIFDYFTQTANASLFFGPLLKDIDNVRIK-YRSFKVIVNSL- 125
+V L L +L+ YF + +A+ F L +++ + R Y + N
Sbjct: 80 SVQEALSLRHAKQTTLTNLVSTYFQHSEDATRFCLNLYQNVHSARCHLYTPLLDLFNIFP 139
Query: 126 QNAHALP----INYVSSVVIRLTEFSNLSNPFASAAPTTRRFRVVQAGCGKLLKQLESSR 181
+++H+ N V ++L F N PFAS P + F+ Q +L +L++
Sbjct: 140 RDSHSAIDESFCNLAFDVFLKLDTFEN---PFAS--PESHSFQDTQLCFYQLADKLDTRI 194
Query: 182 DKARARLQLINITKHGSATFLLAITISLTV---IVASHALA-LLVAAPGLIAASLELAST 237
K+++R++L++ GSA L+ + + +A HAL +LV A L L +
Sbjct: 195 RKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFIAYHALPTILVVAGPLCTPYLPHSFK 254
Query: 238 RRLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASG 297
++ + QL+ AAKGT+ LN+DLDTI RLV+RL+ +++ + ++ L+RG +
Sbjct: 255 KKELSNIFQLNVAAKGTFALNKDLDTIDRLVSRLHTGVKNDKLLIRLGLERGR-DVYTIP 313
Query: 298 EVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEILDP 342
E +QL K+ + + QL+ L +H+ F VN++R+L++KEIL P
Sbjct: 314 EFVKQLRKSHVNHTHQLEVLVDHICRWFTNVNKSRSLLLKEILRP 358
>sp|A2YH25|U496B_ORYSI Putative UPF0496 protein 2 OS=Oryza sativa subsp. indica
GN=OsI_023618 PE=3 SV=2
Length = 408
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 233 ELASTRRLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVR 292
E S+R R LDAAA+G YI+ RDLDT+SR+V R +DELEH R + + RG
Sbjct: 280 EKVSSRHYARAGATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAM-RGHGE 338
Query: 293 LQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEI 339
EVAR+ + + QL ELEEH+ LC +T+NR R LV E+
Sbjct: 339 RPLLQEVAREEEECEEDLRAQLAELEEHVCLCLITINRTRRLVAHEM 385
>sp|Q5Z8N6|U496B_ORYSJ Putative UPF0496 protein 2 OS=Oryza sativa subsp. japonica
GN=Os06g0718300 PE=3 SV=1
Length = 408
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 233 ELASTRRLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVR 292
E S+R R LDAAA+G YI+ RDLDT+SR+V R +DELEH R + + RG
Sbjct: 280 EKVSSRHYARAGATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAM-RGHGE 338
Query: 293 LQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEI 339
EVAR+ + + QL ELEEH+ LC +T+NR R LV E+
Sbjct: 339 RPLLQEVAREEEECEEDLRAQLAELEEHVCLCLITINRTRRLVAHEM 385
>sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630 OS=Arabidopsis thaliana GN=At2g18630 PE=2
SV=3
Length = 393
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 217 ALALLVAAPGLIAASLELASTRRLVRVSTQLDAAAK-GTYILNRDLDTISRLVARLNDEL 275
ALA+ V + G +L ++VR ++ + + GTYI +++D IS LV ++ E+
Sbjct: 257 ALAVPVGSVGKWCNTL-WTKYEKVVRGQKEIITSIRIGTYISVKEMDNISILVRKVEVEI 315
Query: 276 EHMRSTVKFWL-DRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNL 334
E + +F + + EVRL A E+ ++L F++ ++EL EH V +AR +
Sbjct: 316 ESLLKKAEFAITEEKEVRL-AIDEIKKKL----DVFTETIEELGEHAGKYCSDVTKARTV 370
Query: 335 VMKEILDPGQSTTRD 349
+++ I+ + +D
Sbjct: 371 ILQRIIRYPAGSPKD 385
>sp|Q9SYZ8|U496B_ARATH UPF0496 protein At4g34330 OS=Arabidopsis thaliana GN=At4g34330 PE=3
SV=1
Length = 354
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 253 GTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQ 312
GTY+ +DL+ I L+ RL+ E+ M ++ + G V++ + + QL F +
Sbjct: 266 GTYVAVQDLNNIKDLIKRLDTEIRGMVKNAEYAGELGPVKIGINA-IKTQL----EVFKK 320
Query: 313 QLDELEEHLYLCFMTVNRARNLVMKEILDPGQST 346
++ELE +C + RAR ++++ I++ ST
Sbjct: 321 NVEELEIQADMCSTDIRRARTVILQRIINATCST 354
>sp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=1
SV=1
Length = 374
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 253 GTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQ 312
GT++ +DLD I L+ RL E+ M + +F ++ V++ ++ ++L F +
Sbjct: 282 GTFVAVKDLDNIRVLIERLEIEITGMVKSAEFAVEHNAVKI-GIDDIKKKL----EVFKK 336
Query: 313 QLDELEEHLYLCFMTVNRARNLVMKEIL 340
++EL LC + RAR ++++ I+
Sbjct: 337 NVEELGTQADLCSRDIRRARTVILQRII 364
>sp|Q8GW16|U496H_ARATH UPF0496 protein At5g66675 OS=Arabidopsis thaliana GN=At5g66675 PE=2
SV=1
Length = 412
Score = 38.1 bits (87), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 253 GTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDAS--- 309
G Y+ +D+D I V +L E+E M V F L E EVA +L ++ S
Sbjct: 307 GAYVTMKDMDNIRVHVDKLKIEMESMMQKVDFALKEKE------EEVAVRLSMHEISKKF 360
Query: 310 --FSQQLDELEEHLYLCFMTVNRARNLVMKEIL------DPGQS 345
F+++++E+ ++ C + AR +V++ IL D GQ
Sbjct: 361 DVFTERIEEVGDNATKCSKNITLARTIVLRHILSFPSSSDSGQG 404
>sp|Q10QE9|U496A_ORYSJ UPF0496 protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0199100
PE=2 SV=1
Length = 388
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 253 GTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQ 312
GT+I +DLD+I L+ R+ E+ M V+F +R E ++ E ++ L+ F +
Sbjct: 301 GTFIAIKDLDSIRVLINRVELEISSMIDCVEF-AERDEEAVKFGVEEIKKKLE---VFMK 356
Query: 313 QLDELEEHLYLCFMTVNRARNLVMKEIL 340
+++L E C + RAR +V++ I+
Sbjct: 357 SVEDLGEQADRCSRDIRRARTVVLQRII 384
>sp|A2XDK8|U496A_ORYSI UPF0496 protein 1 OS=Oryza sativa subsp. indica GN=OsI_010151 PE=2
SV=1
Length = 388
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 253 GTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQ 312
GT+I +DLD+I L+ R+ E+ M V+F +R E ++ E ++ L+ F +
Sbjct: 301 GTFIAIKDLDSIRVLINRVELEISSMIDCVEF-AERDEEAVKFGVEEIKKKLE---VFMK 356
Query: 313 QLDELEEHLYLCFMTVNRARNLVMKEIL 340
+++L E C + RAR +V++ I+
Sbjct: 357 SVEDLGEQADRCSRDIRRARTVVLQRII 384
>sp|A6WV17|RLMN_OCHA4 Dual-specificity RNA methyltransferase RlmN OS=Ochrobactrum
anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
GN=rlmN PE=3 SV=1
Length = 411
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 104 LLKDIDNVRIKYRSFKVIVNSLQNAHA----LPIN------YVSSVVIRLTEFSNLSNPF 153
+LKDI++ K++V LQ A +P N Y S ++ +F++ N
Sbjct: 309 MLKDIND---SLEDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSEWEQIEKFADYVNAA 365
Query: 154 ASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLINITKHG 197
A+P T R R + A CG+L + E R R L+ + I HG
Sbjct: 366 GYASPIRTPRGRDILAACGQLKSESERMRKSERLALEAMMIAGHG 410
>sp|C0RGD9|RLMN_BRUMB Dual-specificity RNA methyltransferase RlmN OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=rlmN PE=3 SV=1
Length = 411
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 104 LLKDIDNVRIKYRSFKVIVNSLQNAHA----LPIN------YVSSVVIRLTEFSNLSNPF 153
+LKDI++ K++V LQ A +P N Y S ++ +F++ N
Sbjct: 309 MLKDIND---SLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAA 365
Query: 154 ASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLINITKHG 197
A+P T R R + A CG+L + E R R L+ + I HG
Sbjct: 366 GYASPIRTPRGRDILAACGQLKSESERLRKSERLALEAMMIAGHG 410
>sp|B0CII9|RLMN_BRUSI Dual-specificity RNA methyltransferase RlmN OS=Brucella suis
(strain ATCC 23445 / NCTC 10510) GN=rlmN PE=3 SV=1
Length = 411
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 104 LLKDIDNVRIKYRSFKVIVNSLQNAHA----LPIN------YVSSVVIRLTEFSNLSNPF 153
+LKDI++ K++V LQ A +P N Y S ++ +F++ N
Sbjct: 309 MLKDIND---SLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAA 365
Query: 154 ASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLINITKHG 197
A+P T R R + A CG+L + E R R L+ + I HG
Sbjct: 366 GYASPIRTPRGRDILAACGQLKSESERLRKSERLALEAMMIAGHG 410
>sp|A5VN22|RLMN_BRUO2 Dual-specificity RNA methyltransferase RlmN OS=Brucella ovis
(strain ATCC 25840 / 63/290 / NCTC 10512) GN=rlmN PE=3
SV=1
Length = 411
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 104 LLKDIDNVRIKYRSFKVIVNSLQNAHA----LPIN------YVSSVVIRLTEFSNLSNPF 153
+LKDI++ K++V LQ A +P N Y S ++ +F++ N
Sbjct: 309 MLKDIND---SLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAA 365
Query: 154 ASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLINITKHG 197
A+P T R R + A CG+L + E R R L+ + I HG
Sbjct: 366 GYASPIRTPRGRDILAACGQLKSESERLRKSERLALEAMMIAGHG 410
>sp|Q8YEL1|RLMN_BRUME Dual-specificity RNA methyltransferase RlmN OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=rlmN
PE=3 SV=1
Length = 411
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 104 LLKDIDNVRIKYRSFKVIVNSLQNAHA----LPIN------YVSSVVIRLTEFSNLSNPF 153
+LKDI++ K++V LQ A +P N Y S ++ +F++ N
Sbjct: 309 MLKDIND---SLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAA 365
Query: 154 ASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLINITKHG 197
A+P T R R + A CG+L + E R R L+ + I HG
Sbjct: 366 GYASPIRTPRGRDILAACGQLKSESERLRKSERLALEAMMIAGHG 410
>sp|A9M6S9|RLMN_BRUC2 Dual-specificity RNA methyltransferase RlmN OS=Brucella canis
(strain ATCC 23365 / NCTC 10854) GN=rlmN PE=3 SV=1
Length = 411
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 104 LLKDIDNVRIKYRSFKVIVNSLQNAHA----LPIN------YVSSVVIRLTEFSNLSNPF 153
+LKDI++ K++V LQ A +P N Y S ++ +F++ N
Sbjct: 309 MLKDIND---SLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAA 365
Query: 154 ASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLINITKHG 197
A+P T R R + A CG+L + E R R L+ + I HG
Sbjct: 366 GYASPIRTPRGRDILAACGQLKSESERLRKSERLALEAMMIAGHG 410
>sp|Q57FT9|RLMN_BRUAB Dual-specificity RNA methyltransferase RlmN OS=Brucella abortus
biovar 1 (strain 9-941) GN=rlmN PE=3 SV=1
Length = 411
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 104 LLKDIDNVRIKYRSFKVIVNSLQNAHA----LPIN------YVSSVVIRLTEFSNLSNPF 153
+LKDI++ K++V LQ A +P N Y S ++ +F++ N
Sbjct: 309 MLKDIND---SLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAA 365
Query: 154 ASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLINITKHG 197
A+P T R R + A CG+L + E R R L+ + I HG
Sbjct: 366 GYASPIRTPRGRDILAACGQLKSESERLRKSERLALEAMMIAGHG 410
>sp|Q2YNV3|RLMN_BRUA2 Dual-specificity RNA methyltransferase RlmN OS=Brucella abortus
(strain 2308) GN=rlmN PE=3 SV=1
Length = 411
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 104 LLKDIDNVRIKYRSFKVIVNSLQNAHA----LPIN------YVSSVVIRLTEFSNLSNPF 153
+LKDI++ K++V LQ A +P N Y S ++ +F++ N
Sbjct: 309 MLKDIND---SLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAA 365
Query: 154 ASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLINITKHG 197
A+P T R R + A CG+L + E R R L+ + I HG
Sbjct: 366 GYASPIRTPRGRDILAACGQLKSESERLRKSERLALEAMMIAGHG 410
>sp|B2S7X6|RLMN_BRUA1 Dual-specificity RNA methyltransferase RlmN OS=Brucella abortus
(strain S19) GN=rlmN PE=3 SV=1
Length = 411
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 104 LLKDIDNVRIKYRSFKVIVNSLQNAHA----LPIN------YVSSVVIRLTEFSNLSNPF 153
+LKDI++ K++V LQ A +P N Y S ++ +F++ N
Sbjct: 309 MLKDIND---SLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAA 365
Query: 154 ASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLINITKHG 197
A+P T R R + A CG+L + E R R L+ + I HG
Sbjct: 366 GYASPIRTPRGRDILAACGQLKSESERLRKSERLALEAMMIAGHG 410
>sp|Q8G374|RLMN_BRUSU Dual-specificity RNA methyltransferase RlmN OS=Brucella suis biovar
1 (strain 1330) GN=rlmN PE=3 SV=1
Length = 411
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 104 LLKDIDNVRIKYRSFKVIVNSLQNAHA----LPIN------YVSSVVIRLTEFSNLSNPF 153
+LKDI++ K++V LQ A +P N Y S ++ +F++ N
Sbjct: 309 MLKDIND---SLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAA 365
Query: 154 ASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLINITKHG 197
A+P T R R + A CG+L + E R R L+ + I HG
Sbjct: 366 GYASPIRTPRGRDILAACGQLKSESERLRKSERLALEAMMIAGHG 410
>sp|Q7CWI1|RLMN_AGRT5 Dual-specificity RNA methyltransferase RlmN OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=rlmN PE=3 SV=3
Length = 409
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 134 NYVSSVVIRLTEFSNLSNPFASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLIN 192
NY S ++ +F++ N A+P T R R + A CG+L + E R R + +
Sbjct: 342 NYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFEAMM 401
Query: 193 ITKHGS 198
I HG+
Sbjct: 402 IANHGA 407
>sp|B3PQY8|RLMN_RHIE6 Dual-specificity RNA methyltransferase RlmN OS=Rhizobium etli
(strain CIAT 652) GN=rlmN PE=3 SV=1
Length = 409
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 134 NYVSSVVIRLTEFSNLSNPFASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLIN 192
NY S ++ +F++ N A+P T R R + A CG+L + E R R + +
Sbjct: 342 NYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFEAMM 401
Query: 193 ITKHGS 198
I HG+
Sbjct: 402 IANHGA 407
>sp|B5ZTF1|RLMN_RHILW Dual-specificity RNA methyltransferase RlmN OS=Rhizobium
leguminosarum bv. trifolii (strain WSM2304) GN=rlmN PE=3
SV=1
Length = 408
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 134 NYVSSVVIRLTEFSNLSNPFASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLIN 192
NY S ++ +F++ N A+P T R R + A CG+L + E R R + +
Sbjct: 341 NYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFEAMM 400
Query: 193 ITKHGS 198
I HG+
Sbjct: 401 IANHGA 406
>sp|Q1MAN2|RLMN_RHIL3 Dual-specificity RNA methyltransferase RlmN OS=Rhizobium
leguminosarum bv. viciae (strain 3841) GN=rlmN PE=3 SV=1
Length = 408
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 134 NYVSSVVIRLTEFSNLSNPFASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLIN 192
NY S ++ +F++ N A+P T R R + A CG+L + E R R + +
Sbjct: 341 NYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFEAMM 400
Query: 193 ITKHGS 198
I HG+
Sbjct: 401 IANHGA 406
>sp|Q2K3B1|RLMN_RHIEC Dual-specificity RNA methyltransferase RlmN OS=Rhizobium etli
(strain CFN 42 / ATCC 51251) GN=rlmN PE=3 SV=2
Length = 409
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 134 NYVSSVVIRLTEFSNLSNPFASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLIN 192
NY S ++ +F++ N A+P T R R + A CG+L + E R R + +
Sbjct: 342 NYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFEAMM 401
Query: 193 ITKHGS 198
I HG+
Sbjct: 402 IANHGA 407
>sp|A7TGQ2|OAF3_VANPO Oleate activated transcription factor 3 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=OAF3 PE=3
SV=1
Length = 802
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 19/139 (13%)
Query: 27 YNEFWTRVLALSNKDSAKSIQVESTTAARLSSYRLFAEQLLDPDQSTVIRILDLVKTPSL 86
++E ++ L L ++ +S Q+ S A + S YR A L D +TV L + P L
Sbjct: 169 FDEESSKNLVLEQQEPQQSYQIHSLLAEKFSHYRKNANLKLGDDSTTVYHNLIIKSLPDL 228
Query: 87 ------IFDYFTQTANASLFFGPLLKDID----NVRIKYRSFKV-IVNSLQNAHALPINY 135
I Y+ Q F PL+ I+ NV I+ K+ + NSL + N
Sbjct: 229 GLLMDTIIPYYEQ------FIEPLVPIIEFKDFNVEIQKLYAKIELSNSLD--PKIGENT 280
Query: 136 VSSVVIRLTEFSNLSNPFA 154
++ +++ + +LS+ FA
Sbjct: 281 LACIILLICRLCHLSSKFA 299
>sp|Q98E86|RLMN_RHILO Dual-specificity RNA methyltransferase RlmN OS=Rhizobium loti
(strain MAFF303099) GN=rlmN PE=3 SV=1
Length = 410
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 134 NYVSSVVIRLTEFSNLSNPFASAAPT-TRRFRVVQAGCGKLLKQLESSRDKARARLQLIN 192
NY S + +F++ N A+P T R R + A CG+L + E R R L+ +
Sbjct: 344 NYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACGQLKSESERMRKVDRLALEAMM 403
Query: 193 ITKHGSA 199
I HG A
Sbjct: 404 IAGHGEA 410
>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule OS=Homo sapiens GN=NRCAM PE=1 SV=3
Length = 1304
Score = 31.6 bits (70), Expect = 9.2, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 284 FWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEILDPG 343
FW+D RL S V+ Q L D FS L E Y+C+ N + + K+ +
Sbjct: 179 FWMDNSFQRLPQSERVS-QGLNGDLYFSNVLPEDTREDYICYARFNHTQTIQQKQPISVK 237
Query: 344 QSTTRDLN 351
+ +LN
Sbjct: 238 VISVDELN 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.131 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,433,681
Number of Sequences: 539616
Number of extensions: 3796414
Number of successful extensions: 11085
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 11027
Number of HSP's gapped (non-prelim): 62
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)