Query 046315
Match_columns 353
No_of_seqs 98 out of 104
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:49:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05055 DUF677: Protein of un 100.0 1.4E-88 3.1E-93 664.1 29.2 290 47-339 22-336 (336)
2 PF05633 DUF793: Protein of un 99.6 7.5E-15 1.6E-19 146.3 17.2 271 54-338 64-388 (389)
3 PF03087 DUF241: Arabidopsis p 95.6 2.2 4.7E-05 40.4 21.3 48 76-124 24-71 (231)
4 PF04156 IncA: IncA protein; 87.0 22 0.00049 31.9 16.7 24 189-212 5-28 (191)
5 cd02433 Nodulin-21_like_2 Nodu 83.6 17 0.00036 34.6 11.4 65 249-314 65-135 (234)
6 PRK11091 aerobic respiration c 76.1 86 0.0019 34.1 15.4 37 239-278 86-122 (779)
7 PF06072 Herpes_US9: Alphaherp 73.2 12 0.00025 28.5 5.4 21 195-215 29-49 (60)
8 cd02434 Nodulin-21_like_3 Nodu 72.6 30 0.00064 32.6 9.4 67 249-316 48-120 (225)
9 PF05055 DUF677: Protein of un 72.1 1.1E+02 0.0025 30.7 23.9 117 95-219 59-200 (336)
10 cd02432 Nodulin-21_like_1 Nodu 72.0 36 0.00078 32.0 9.8 57 250-307 54-116 (218)
11 PF05508 Ran-binding: RanGTP-b 70.5 95 0.0021 30.9 12.6 83 238-325 45-145 (302)
12 PF12729 4HB_MCP_1: Four helix 68.8 59 0.0013 27.2 9.8 63 255-319 68-130 (181)
13 TIGR02894 DNA_bind_RsfA transc 66.2 1E+02 0.0022 27.9 10.9 43 295-337 115-157 (161)
14 PF01616 Orbi_NS3: Orbivirus N 62.7 1E+02 0.0022 28.8 10.5 44 168-211 70-113 (195)
15 PF14712 Snapin_Pallidin: Snap 61.0 35 0.00076 27.1 6.5 71 103-185 18-88 (92)
16 PF12761 End3: Actin cytoskele 58.2 96 0.0021 29.0 9.5 93 235-339 100-193 (195)
17 cd02435 CCC1 CCC1. CCC1: This 56.5 82 0.0018 30.1 9.2 64 249-313 66-137 (241)
18 PF06103 DUF948: Bacterial pro 53.3 1.1E+02 0.0024 24.1 9.4 22 300-321 63-84 (90)
19 PF10168 Nup88: Nuclear pore c 53.1 55 0.0012 36.2 8.3 28 294-321 688-715 (717)
20 PF10805 DUF2730: Protein of u 52.5 1.3E+02 0.0029 24.9 8.8 56 259-323 42-97 (106)
21 KOG4191 Histone acetyltransfer 52.4 88 0.0019 32.8 9.0 80 252-339 394-473 (516)
22 PF04550 Phage_holin_2: Phage 43.1 55 0.0012 26.8 4.8 26 215-240 61-87 (89)
23 smart00502 BBC B-Box C-termina 43.1 1.7E+02 0.0038 23.4 10.6 42 294-335 61-102 (127)
24 PF04136 Sec34: Sec34-like fam 41.3 57 0.0012 29.0 5.2 45 83-127 30-77 (157)
25 PRK11466 hybrid sensory histid 40.5 5.4E+02 0.012 28.4 19.8 44 236-279 356-406 (914)
26 PF12711 Kinesin-relat_1: Kine 40.5 1.1E+02 0.0023 25.0 6.1 27 262-288 27-53 (86)
27 PF04568 IATP: Mitochondrial A 39.7 43 0.00093 28.0 3.8 23 300-322 74-100 (100)
28 PF04012 PspA_IM30: PspA/IM30 39.0 3.1E+02 0.0067 25.1 11.7 56 236-291 28-83 (221)
29 PRK09546 zntB zinc transporter 38.7 3.8E+02 0.0083 26.1 14.8 94 83-184 148-245 (324)
30 KOG0971 Microtubule-associated 36.2 3.3E+02 0.0072 31.4 10.8 94 241-336 434-535 (1243)
31 PF07851 TMPIT: TMPIT-like pro 35.6 93 0.002 31.3 6.1 42 294-335 7-48 (330)
32 TIGR01386 cztS_silS_copS heavy 34.5 4.5E+02 0.0098 25.7 14.4 27 231-257 183-209 (457)
33 PRK10869 recombination and rep 33.6 6.2E+02 0.013 27.0 15.3 36 306-341 342-377 (553)
34 PHA03332 membrane glycoprotein 33.5 8.6E+02 0.019 28.7 14.5 21 321-341 981-1001(1328)
35 PF07889 DUF1664: Protein of u 32.7 2.8E+02 0.0061 24.1 7.9 16 303-318 101-116 (126)
36 smart00787 Spc7 Spc7 kinetocho 32.3 5.2E+02 0.011 25.7 18.4 38 243-280 149-186 (312)
37 KOG0976 Rho/Rac1-interacting s 32.1 2.5E+02 0.0054 31.9 9.0 78 256-333 295-372 (1265)
38 PRK15039 transcriptional repre 30.6 3E+02 0.0065 22.5 7.6 52 270-328 17-68 (90)
39 PF06103 DUF948: Bacterial pro 30.1 2.1E+02 0.0046 22.5 6.4 25 259-283 47-71 (90)
40 PF00957 Synaptobrevin: Synapt 29.9 2.7E+02 0.0059 21.8 7.2 60 262-322 3-62 (89)
41 PF01618 MotA_ExbB: MotA/TolQ/ 29.8 3.5E+02 0.0076 23.0 10.1 40 172-211 39-79 (139)
42 TIGR00383 corA magnesium Mg(2+ 29.6 5.1E+02 0.011 24.9 11.4 28 160-187 215-242 (318)
43 COG5346 Predicted membrane pro 29.6 3.9E+02 0.0084 23.4 8.5 68 152-220 37-112 (136)
44 PHA00649 hypothetical protein 29.4 1.6E+02 0.0035 23.3 5.2 38 185-222 40-77 (83)
45 PF05745 CRPA: Chlamydia 15 kD 28.6 1.3E+02 0.0028 26.6 5.1 55 195-249 68-140 (150)
46 PF12486 DUF3702: ImpA domain 27.8 4.4E+02 0.0095 23.5 8.5 66 237-322 65-137 (148)
47 PF14723 SSFA2_C: Sperm-specif 27.0 64 0.0014 29.6 3.1 25 300-324 107-131 (179)
48 PF03511 Fanconi_A: Fanconi an 26.7 46 0.001 25.6 1.8 35 84-118 14-53 (64)
49 PF15176 LRR19-TM: Leucine-ric 26.7 60 0.0013 27.3 2.6 24 192-215 15-38 (102)
50 PF04380 BMFP: Membrane fusoge 26.2 2.4E+02 0.0053 22.1 6.0 27 293-319 52-78 (79)
51 cd07632 BAR_APPL2 The Bin/Amph 26.1 5.7E+02 0.012 24.3 10.3 81 85-182 2-82 (215)
52 PRK11352 regulator protein Frm 25.9 3.6E+02 0.0079 21.9 8.0 71 266-340 10-83 (91)
53 PF13887 MRF_C1: Myelin gene r 25.7 68 0.0015 22.0 2.3 22 298-319 14-35 (36)
54 PF01988 VIT1: VIT family; In 25.3 5.4E+02 0.012 23.7 9.3 16 294-309 97-112 (213)
55 PF05816 TelA: Toxic anion res 25.0 6.5E+02 0.014 24.9 10.2 48 240-287 93-144 (333)
56 COG4980 GvpP Gas vesicle prote 24.9 4.5E+02 0.0097 22.6 8.7 11 216-226 18-28 (115)
57 PF15290 Syntaphilin: Golgi-lo 24.7 1.4E+02 0.003 29.5 5.1 49 276-331 109-157 (305)
58 PF05597 Phasin: Poly(hydroxya 24.3 4.8E+02 0.01 22.7 9.9 54 262-318 68-129 (132)
59 PF03649 UPF0014: Uncharacteri 24.0 1.2E+02 0.0025 29.3 4.5 51 251-301 128-178 (250)
60 KOG2856 Adaptor protein PACSIN 23.4 4.1E+02 0.0089 27.5 8.2 65 265-340 176-240 (472)
61 PF09177 Syntaxin-6_N: Syntaxi 22.6 1.7E+02 0.0038 23.5 4.7 27 296-322 37-63 (97)
62 PF04120 Iron_permease: Low af 22.0 4.2E+02 0.0092 23.2 7.1 21 195-215 11-31 (132)
63 PF03194 LUC7: LUC7 N_terminus 21.6 2.7E+02 0.0058 26.8 6.4 34 297-330 122-157 (254)
64 PF12243 CTK3: CTD kinase subu 21.5 3.3E+02 0.0071 24.0 6.4 66 264-329 10-75 (139)
65 PF08314 Sec39: Secretory path 21.5 9.5E+02 0.021 26.3 11.4 52 251-312 645-702 (715)
66 PF14276 DUF4363: Domain of un 21.3 4.7E+02 0.01 21.6 7.9 44 243-288 28-71 (121)
67 COG1937 Uncharacterized protei 21.3 4.6E+02 0.0099 21.4 6.8 9 317-325 57-65 (89)
68 PF08700 Vps51: Vps51/Vps67; 21.2 3.9E+02 0.0084 20.5 7.1 64 258-321 18-81 (87)
69 PRK11020 hypothetical protein; 20.8 4.3E+02 0.0094 22.7 6.7 50 264-319 3-52 (118)
70 PF02583 Trns_repr_metal: Meta 20.7 4.3E+02 0.0094 20.9 7.8 52 270-328 13-64 (85)
71 PF00038 Filament: Intermediat 20.6 7.5E+02 0.016 23.6 11.0 83 235-324 192-274 (312)
72 PLN02372 violaxanthin de-epoxi 20.3 6.4E+02 0.014 26.4 9.0 11 267-277 362-372 (455)
73 PF05600 DUF773: Protein of un 20.1 6.3E+02 0.014 26.9 9.3 77 264-353 430-506 (507)
No 1
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=100.00 E-value=1.4e-88 Score=664.06 Aligned_cols=290 Identities=37% Similarity=0.523 Sum_probs=264.9
Q ss_pred ccccccccccccHHHHhhcccCCCHHHHHHHHhcC-------CCchHHHHHHHhhHHHHHhHHHHHhhHHHHHHhhhhHH
Q 046315 47 QVESTTAARLSSYRLFAEQLLDPDQSTVIRILDLV-------KTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFK 119 (353)
Q Consensus 47 ~~e~~~s~~l~s~~~~~~~LLep~qe~V~~il~~~-------~l~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~y~~i~ 119 (353)
|+|. +|.|+|||++|++||||||||||++||+|+ +|++||++|||+|++||+||++|++||++||.+|++|+
T Consensus 22 ~~~~-~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~ 100 (336)
T PF05055_consen 22 GVET-RSLSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIR 100 (336)
T ss_pred cccc-CCCChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5564 677899999999999999999999999975 39999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCC-----CcccHHHHHHHHhchhhcCCCCCCCCCcchhHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046315 120 VIVNSLQNAHAL-----PINYVSSVVIRLTEFSNLSNPFASAAPTTRRFRVVQAGCGKLLKQLESSRDKARARLQLINIT 194 (353)
Q Consensus 120 ~aL~~~~~~~~~-----~~~~~~~~l~eL~~F~~~~nPF~~~f~~~~~F~~v~~~~~~Ll~~L~~~k~K~~kKlk~~r~~ 194 (353)
++|++|+.+..+ ..+.|++|++||++|++++|||+++ ....+||+||++|++||++|+++|+|+++|+|++|+|
T Consensus 101 ~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~-~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~ 179 (336)
T PF05055_consen 101 RALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDE-EFFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTW 179 (336)
T ss_pred HHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987643 2466789999999999999999976 1379999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHH---HHHH---HH---HHHHhhhhh-hhhhhhHHhHHHH---HHHHHHHHHhhccchhhcccc
Q 046315 195 KHGSATFLLAITISLTVI---VASH---AL---ALLVAAPGL-IAASLELASTRRL---VRVSTQLDAAAKGTYILNRDL 261 (353)
Q Consensus 195 ~~vs~~~fvaa~~av~i~---IA~h---al---a~l~a~P~~-~~~~~~~~~k~~l---~~l~~QldaaakGtyil~~Dl 261 (353)
+++|++|||+++++|+|+ +|+| ++ +|++++|++ +|.|++..|++++ +++++|+|+|+|||||+++||
T Consensus 180 ~kvs~v~fvaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~~al~~~~~~l~~aakGtyI~~~Dl 259 (336)
T PF05055_consen 180 RKVSNVCFVAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYEEALKKQKEQLDAAAKGTYILIKDL 259 (336)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 999999999999999876 3333 33 345667887 5679998888864 567788999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046315 262 DTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEI 339 (353)
Q Consensus 262 dTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~InrAR~lVl~~I 339 (353)
||||+||+||+|+||||+++|+||+++++++ +.+++||+||+|++++|++||||||||||+||++|||||++|||+|
T Consensus 260 dTIsrLV~RL~deIE~~~~~v~fave~~~d~-~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrAR~lVlq~I 336 (336)
T PF05055_consen 260 DTISRLVDRLEDEIEHMKALVDFAVERGEDE-EAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRARTLVLQEI 336 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999887 8999999999999999999999999999999999999999999998
No 2
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=99.63 E-value=7.5e-15 Score=146.34 Aligned_cols=271 Identities=15% Similarity=0.158 Sum_probs=185.3
Q ss_pred cccccHHHHhhcccCCCHHHHHHHHhc--------CCCchHHHHHHHhhHHHHHhHHHHHhhHHHHHHhhhhHHHHHHhh
Q 046315 54 ARLSSYRLFAEQLLDPDQSTVIRILDL--------VKTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSL 125 (353)
Q Consensus 54 ~~l~s~~~~~~~LLep~qe~V~~il~~--------~~l~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~y~~i~~aL~~~ 125 (353)
.+++=.+.+.+.++.=.. -++.+|.. +.+++||.+|||.|.|++|+|+++...|.+.|..|+.++-|++.+
T Consensus 64 LSL~W~~~~ld~~l~~~~-efr~li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L 142 (389)
T PF05633_consen 64 LSLSWMRKALDSFLCCHE-EFRALITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHAL 142 (389)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344446666676664433 34444332 238999999999999999999999999999999999999999999
Q ss_pred hcccCCCcccHHHHHHHHhchhhcC--C-----------------------CCCC--CCCcchhHHHH------HhhHHH
Q 046315 126 QNAHALPINYVSSVVIRLTEFSNLS--N-----------------------PFAS--AAPTTRRFRVV------QAGCGK 172 (353)
Q Consensus 126 ~~~~~~~~~~~~~~l~eL~~F~~~~--n-----------------------PF~~--~f~~~~~F~~v------~~~~~~ 172 (353)
+...+.....+.++...|.++..+. + +... ...+.+.|++. .=.++.
T Consensus 143 ~~~~~~~~~~~rRAr~aL~dl~~~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~ 222 (389)
T PF05633_consen 143 DSSRPLGEGQLRRARKALSDLKIAMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAAR 222 (389)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHH
Confidence 9864333333446666665554211 0 0010 00123456543 345666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH-HHHHHHHHHHH-HHH-HHhhhhhhh--hh----hhHHh---HHHH
Q 046315 173 LLKQLESSRDKARARLQLINITKHGSATFLLAIT-ISLTVIVASHA-LAL-LVAAPGLIA--AS----LELAS---TRRL 240 (353)
Q Consensus 173 Ll~~L~~~k~K~~kKlk~~r~~~~vs~~~fvaa~-~av~i~IA~ha-la~-l~a~P~~~~--~~----~~~~~---k~~l 240 (353)
+|+ .+...|-.+|.-....+-+|..|+ +.-.++|.++. +++ +-+-|..+. -+ ..+|. ..-.
T Consensus 223 ~Lq-------~m~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~LQ 295 (389)
T PF05633_consen 223 QLQ-------AMGENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFISLQ 295 (389)
T ss_pred HHH-------HHHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHHHH
Confidence 666 788888888877777666666655 33344433322 222 222121111 11 11232 2233
Q ss_pred HHHHHHHHHh-hccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHH
Q 046315 241 VRVSTQLDAA-AKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEE 319 (353)
Q Consensus 241 ~~l~~Qldaa-akGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLee 319 (353)
+++.+.++.. .||...+.++|+.|.+.|++|++-++. ++|.++.++. +.+++.|+||.+..+.+.+.|+.||.
T Consensus 296 ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr~L~el~d~----~~~p~~~e~~--~ev~~~V~EL~~~~~~L~~GLdpLer 369 (389)
T PF05633_consen 296 ERINEEIKKKERKGSCGLLKELQQVEASVRELHELIDS----FQFPLEEEKE--EEVREAVEELARVCEALSQGLDPLER 369 (389)
T ss_pred HHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHh----ccCCcchhHH--HHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 6677888887 578999999999999999999977774 4677776443 68999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046315 320 HLYLCFMTVNRARNLVMKE 338 (353)
Q Consensus 320 hv~lCf~~InrAR~lVl~~ 338 (353)
+|+.-|+.|-++|+-+|.-
T Consensus 370 qVre~Fh~IV~sR~elLd~ 388 (389)
T PF05633_consen 370 QVREVFHRIVRSRTELLDS 388 (389)
T ss_pred HHHHHHHHHHHhhHHHHhc
Confidence 9999999999999998863
No 3
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=95.58 E-value=2.2 Score=40.42 Aligned_cols=48 Identities=4% Similarity=0.055 Sum_probs=42.1
Q ss_pred HHHhcCCCchHHHHHHHhhHHHHHhHHHHHhhHHHHHHhhhhHHHHHHh
Q 046315 76 RILDLVKTPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNS 124 (353)
Q Consensus 76 ~il~~~~l~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~y~~i~~aL~~ 124 (353)
..|.... ..+|++..|.|..-+|+|+.-...+-+.+.+.+-++.+|..
T Consensus 24 ~al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRR 71 (231)
T PF03087_consen 24 QALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRR 71 (231)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444445 78999999999999999999999999999999999999964
No 4
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.02 E-value=22 Score=31.88 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=13.3
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHH
Q 046315 189 QLINITKHGSATFLLAITISLTVI 212 (353)
Q Consensus 189 k~~r~~~~vs~~~fvaa~~av~i~ 212 (353)
+.+.....+.|++++++.++.+++
T Consensus 5 ~i~~i~~iilgilli~~gI~~Lv~ 28 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAALVL 28 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666665555444443
No 5
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=83.56 E-value=17 Score=34.64 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=42.9
Q ss_pred Hhhccchhhcc-ccccHHHHHHHHHHHHHh-----hHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhH
Q 046315 249 AAAKGTYILNR-DLDTISRLVARLNDELEH-----MRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQL 314 (353)
Q Consensus 249 aaakGtyil~~-DldTIs~LV~RL~~eIe~-----~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~ql 314 (353)
+|+-|-|+-.+ +-|.+...++|=+.+++. ...++++-.++|-.+ +..+.+++++.|+.+.|.+.+
T Consensus 65 SMa~GeYls~kse~d~~~~~~~re~~~i~~~p~~e~~el~~iy~~~G~~~-~~a~~~~~~l~~~~~~~~~~~ 135 (234)
T cd02433 65 SMAAGEYVSVTSQRELLEASIPDERRELRKHPLEEAAELALIYRAKGLDE-EEAKRVASQLMNDPEQALDTL 135 (234)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhCcchhHHHH
Confidence 45566666555 366666677776666654 344555666665555 678889999998877776543
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=76.11 E-value=86 Score=34.08 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhccchhhccccccHHHHHHHHHHHHHhh
Q 046315 239 RLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHM 278 (353)
Q Consensus 239 ~l~~l~~QldaaakGtyil~~DldTIs~LV~RL~~eIe~~ 278 (353)
.+.++..+++.+..|-+-++.++ ...+++|..+++..
T Consensus 86 ~l~~~~~~l~~~~~~~~~~~~~l---~~~~~~l~~~~~~~ 122 (779)
T PRK11091 86 RLSRLVAKLEEMRERDLELNVQL---KDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 45555666777777766665554 55566666665443
No 7
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=73.19 E-value=12 Score=28.46 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=12.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 046315 195 KHGSATFLLAITISLTVIVAS 215 (353)
Q Consensus 195 ~~vs~~~fvaa~~av~i~IA~ 215 (353)
|+...+++..+++.+++|++.
T Consensus 29 rRrc~~~v~~v~~~~~~c~~S 49 (60)
T PF06072_consen 29 RRRCRLAVAIVFAVVALCVLS 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666665556655555443
No 8
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=72.56 E-value=30 Score=32.65 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=40.1
Q ss_pred Hhhccchhhcc-ccccHHHHHHHHHHHHHhhH-----HHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHH
Q 046315 249 AAAKGTYILNR-DLDTISRLVARLNDELEHMR-----STVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDE 316 (353)
Q Consensus 249 aaakGtyil~~-DldTIs~LV~RL~~eIe~~~-----~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qlee 316 (353)
+|+-|.|+-.+ +-|...+..+|-+.++++.. .+.+.-..+|-.+ +..+.+++++-|+.+.|.+.+-.
T Consensus 48 SMa~GeYls~kse~d~~~~e~~re~~~i~~~pe~E~~el~~iy~~kG~~~-~~a~~v~~~l~~~~~~~~~~m~~ 120 (225)
T cd02434 48 SMAAGEYVSTKAERDFLHSEKKREEWEIENYPEGEKSEMVEIYSLKGLSE-EVADQVVELLSKYRKLFVDIMMT 120 (225)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhCchhhHHHHHH
Confidence 34445555444 25555566666666665432 2444444555444 66788899999888887775544
No 9
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=72.12 E-value=1.1e+02 Score=30.70 Aligned_cols=117 Identities=12% Similarity=0.021 Sum_probs=55.0
Q ss_pred HHHHHhHHHHHhhHHHHHHhhhhHHHHHHhhhcccCCCcccHHHHHHHHhchhhcCCCCC--------------------
Q 046315 95 ANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQNAHALPINYVSSVVIRLTEFSNLSNPFA-------------------- 154 (353)
Q Consensus 95 ~~a~~~C~~L~k~I~~aR~~y~~i~~aL~~~~~~~~~~~~~~~~~l~eL~~F~~~~nPF~-------------------- 154 (353)
-+-.++-..+....+....-...=..+++++... - ..|..+...|+.|..-..|-+
T Consensus 59 ~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~a---R-~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~ 134 (336)
T PF05055_consen 59 WKNPELFRLVSDYFDSSLEASDFCEALLKCIHRA---R-DNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKFKA 134 (336)
T ss_pred hcChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---H-HHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhhhh
Confidence 3455555566666655554443333334333331 0 122366777777765443321
Q ss_pred --CCCCcchhHHHHHhhHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhHHH--HHHHHHHHHHHHHHHH
Q 046315 155 --SAAPTTRRFRVVQAGCGKLLKQLESSRDKARARLQLI-NITKHGSATFLL--AITISLTVIVASHALA 219 (353)
Q Consensus 155 --~~f~~~~~F~~v~~~~~~Ll~~L~~~k~K~~kKlk~~-r~~~~vs~~~fv--aa~~av~i~IA~hala 219 (353)
++| ... ....++..+-++-.+..+|++++.+-+ |..|.+...--+ +.|++..+++++.+++
T Consensus 135 ~~NPF--s~~--~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv 200 (336)
T PF05055_consen 135 AGNPF--SDE--EFFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVV 200 (336)
T ss_pred cCCCC--Cch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 121 111 035566666666666666665443222 333333333222 3345555556666654
No 10
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=72.00 E-value=36 Score=31.99 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=28.9
Q ss_pred hhccchhhcc-ccccHHHHHHHHHHHHHhh-----HHHHHHHHHhchhhhchHHHHHHHHHhch
Q 046315 250 AAKGTYILNR-DLDTISRLVARLNDELEHM-----RSTVKFWLDRGEVRLQASGEVARQLLKND 307 (353)
Q Consensus 250 aakGtyil~~-DldTIs~LV~RL~~eIe~~-----~~~v~fal~~~~~~~~~vkevv~elkk~~ 307 (353)
|+-|-|+-.+ +-|.....++|=+.++++. ..+.+.-..+|-.+ +....+++++-++.
T Consensus 54 Ma~G~yls~~sq~d~~~~~~~~e~~~i~~~p~~e~~el~~~~~~~G~~~-~~a~~~a~~l~~~~ 116 (218)
T cd02432 54 MAAGEYVSVSSQRDTEKADIAKERRELAEDPEAELEELADIYEERGLSP-ELARQVADELMAKD 116 (218)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCH-HHHHHHHHHHhhcC
Confidence 3444554333 2444555555555555554 23333334444444 56677777777664
No 11
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=70.50 E-value=95 Score=30.89 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHH---------------hhccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHhch---hhhchHHHH
Q 046315 238 RRLVRVSTQLDA---------------AAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGE---VRLQASGEV 299 (353)
Q Consensus 238 ~~l~~l~~Qlda---------------aakGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~---~~~~~vkev 299 (353)
+.++.++.+|+. +++|.- .|++.-.|++.|+.+|.+.-..++-+.+.++ .. ..-++.
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt----~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e~~~~~-~~~~~~ 119 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNT----SLESALPLTKDLRREIDSFDERLEEAAEKEELSKSS-ENQKES 119 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-chhHHH
Confidence 355666666554 478854 5688889999999999998888877766322 11 234455
Q ss_pred HHHHHhchhhHHHhHHHHHHHHHHHH
Q 046315 300 ARQLLKNDASFSQQLDELEEHLYLCF 325 (353)
Q Consensus 300 v~elkk~~~~f~~qleeLeehv~lCf 325 (353)
++.+.+....+...+||-===+.|+.
T Consensus 120 i~~V~~~ik~LL~rId~aiPlinLal 145 (302)
T PF05508_consen 120 IKKVERYIKDLLARIDDAIPLINLAL 145 (302)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 55555555555555554433334433
No 12
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=68.79 E-value=59 Score=27.20 Aligned_cols=63 Identities=8% Similarity=0.154 Sum_probs=32.9
Q ss_pred hhhccccccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHH
Q 046315 255 YILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEE 319 (353)
Q Consensus 255 yil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLee 319 (353)
|++..|-+.+......+...........+---..... ..-+..++++++....|.+..+++-+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~y~~~~~~~~~ 130 (181)
T PF12729_consen 68 YLLATDPEERQEIEKEIDEARAEIDEALEEYEKLILS--PEEKQLLEEFKEAWKAYRKLRDQVIE 130 (181)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666555555555444444322222111 12355677777777777666655533
No 13
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.20 E-value=1e+02 Score=27.94 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046315 295 ASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMK 337 (353)
Q Consensus 295 ~vkevv~elkk~~~~f~~qleeLeehv~lCf~~InrAR~lVl~ 337 (353)
.++.-+++|.+....+.+.+..++|--..-+..++|||.+++-
T Consensus 115 ~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~~ 157 (161)
T TIGR02894 115 SLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAVV 157 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677777777777777777788888899999999998864
No 14
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=62.65 E-value=1e+02 Score=28.84 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q 046315 168 AGCGKLLKQLESSRDKARARLQLINITKHGSATFLLAITISLTV 211 (353)
Q Consensus 168 ~~~~~Ll~~L~~~k~K~~kKlk~~r~~~~vs~~~fvaa~~av~i 211 (353)
.=....|.+|+...+++.||-.+++...-+++++-+...+.-++
T Consensus 70 ~vne~~L~~L~~el~~~kRk~~il~~~~li~a~v~l~ts~~~~~ 113 (195)
T PF01616_consen 70 HVNEQILPKLKHELRKLKRKRRILHIVELIAAIVALLTSVVMAI 113 (195)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999888877776666655554444433
No 15
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=61.04 E-value=35 Score=27.08 Aligned_cols=71 Identities=15% Similarity=0.329 Sum_probs=44.1
Q ss_pred HHHhhHHHHHHhhhhHHHHHHhhhcccCCCcccHHHHHHHHhchhhcCCCCCCCCCcchhHHHHHhhHHHHHHHHHHHHH
Q 046315 103 PLLKDIDNVRIKYRSFKVIVNSLQNAHALPINYVSSVVIRLTEFSNLSNPFASAAPTTRRFRVVQAGCGKLLKQLESSRD 182 (353)
Q Consensus 103 ~L~k~I~~aR~~y~~i~~aL~~~~~~~~~~~~~~~~~l~eL~~F~~~~nPF~~~f~~~~~F~~v~~~~~~Ll~~L~~~k~ 182 (353)
.+...|+..+.+|..+...|..... -+.++.+.....+||+.. .-......+..+-..+-.+++.-++
T Consensus 18 ~~~~~l~el~~sQ~~L~~~i~~~~~-----------~L~~~~~~~~~~~~~~~~-~y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 18 RLDQQLQELRQSQEELLQQIDRLNE-----------KLKELNEVEQINEPFDLD-PYVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhhhhHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999888877754332 245555444455587632 2234566666666666666666666
Q ss_pred HHH
Q 046315 183 KAR 185 (353)
Q Consensus 183 K~~ 185 (353)
++.
T Consensus 86 R~~ 88 (92)
T PF14712_consen 86 RAD 88 (92)
T ss_pred HHH
Confidence 554
No 16
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=58.20 E-value=96 Score=28.97 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=61.3
Q ss_pred HhHHHHHHHHHHHHHhhccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHhch-hhhchHHHHHHHHHhchhhHHHh
Q 046315 235 ASTRRLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGE-VRLQASGEVARQLLKNDASFSQQ 313 (353)
Q Consensus 235 ~~k~~l~~l~~QldaaakGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~-~~~~~vkevv~elkk~~~~f~~q 313 (353)
..++.|..|-++|..+.+++---.++-+.-..||.+ |.|.++.--+-=+..-+ .. .....-++.++...+...+|
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~---e~EqLL~YK~~ql~~~~~~~-~~~~~~l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKR---EFEQLLDYKERQLRELEEGR-SKSGKNLKSVREDLDTIEEQ 175 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHH---HHHHHHHHHHHHHHhhhccC-CCCCCCHHHHHHHHHHHHHH
Confidence 467777778778887766655434566666777776 66766665433333311 11 23445578888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046315 314 LDELEEHLYLCFMTVNRARNLVMKEI 339 (353)
Q Consensus 314 leeLeehv~lCf~~InrAR~lVl~~I 339 (353)
++-||.|+ +.|..+|+..
T Consensus 176 V~~Le~~L--------~~k~~eL~~L 193 (195)
T PF12761_consen 176 VDGLESHL--------SSKKQELQQL 193 (195)
T ss_pred HHHHHHHH--------HHHHHHHHHh
Confidence 99999998 4566666543
No 17
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=56.50 E-value=82 Score=30.08 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=28.4
Q ss_pred Hhhccchhhccc-cccHHHHHHHHHHHHHhhHH------HHHHHHHhchhhhchHHHH-HHHHHhchhhHHHh
Q 046315 249 AAAKGTYILNRD-LDTISRLVARLNDELEHMRS------TVKFWLDRGEVRLQASGEV-ARQLLKNDASFSQQ 313 (353)
Q Consensus 249 aaakGtyil~~D-ldTIs~LV~RL~~eIe~~~~------~v~fal~~~~~~~~~vkev-v~elkk~~~~f~~q 313 (353)
+|+-|-|+-.+. -|.....++|-+.++++... +.+.-.++|-.+ +....+ .+.+.++.+.+.+.
T Consensus 66 SMa~GeYlS~~sq~d~~~~~~~~e~~~i~~~~~~E~~e~l~~~~~~~G~~~-~~~~~~~~~~l~~~~~~~~~~ 137 (241)
T cd02435 66 SMGLGGYLAAKSERDHYQREHKRKQEAVEASPSTEQEEIILYDLVQYGLVP-LETAASTVTDLRKNPQALVDF 137 (241)
T ss_pred HHHHhhHHHhhhhHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhChhHHHHH
Confidence 344455554442 44445555555555543322 333444443333 333333 33566655444343
No 18
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=53.30 E-value=1.1e+02 Score=24.13 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=9.7
Q ss_pred HHHHHhchhhHHHhHHHHHHHH
Q 046315 300 ARQLLKNDASFSQQLDELEEHL 321 (353)
Q Consensus 300 v~elkk~~~~f~~qleeLeehv 321 (353)
++...++...+.+.++++++-+
T Consensus 63 v~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 63 VNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 19
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.13 E-value=55 Score=36.23 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=21.1
Q ss_pred chHHHHHHHHHhchhhHHHhHHHHHHHH
Q 046315 294 QASGEVARQLLKNDASFSQQLDELEEHL 321 (353)
Q Consensus 294 ~~vkevv~elkk~~~~f~~qleeLeehv 321 (353)
..++++++|.-++-....++++.+..|+
T Consensus 688 ~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 688 RTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777777777777765
No 20
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.53 E-value=1.3e+02 Score=24.92 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=33.8
Q ss_pred cccccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHH
Q 046315 259 RDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYL 323 (353)
Q Consensus 259 ~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~l 323 (353)
.+++...+=+..++.+++|+=.--++ +.++.-|.+++........+|+.++..+.+
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv---------~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDV---------HDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445677777777777777222111 346666666776666666666666655544
No 21
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=52.44 E-value=88 Score=32.85 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=56.4
Q ss_pred ccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHHH
Q 046315 252 KGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRA 331 (353)
Q Consensus 252 kGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~InrA 331 (353)
-|-+-.-.|-|-|+.-.++|..++.-.-+- +.+.++..++.+=+|+.. ..|.+-|++|..+|..|+.-+||+
T Consensus 394 ded~pasdddDEvlaeLR~lqaeLk~vS~~------N~k~k~~Ll~la~eE~a~--qe~~q~lddlDkqI~qaYvKr~r~ 465 (516)
T KOG4191|consen 394 DEDRPASDDDDEVLAELRKLQAELKAVSAH------NRKKKHDLLRLAPEEMAR--QEFQQVLDDLDKQIEQAYVKRNRS 465 (516)
T ss_pred ccCCCcccchHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778888999999998887654332 222232455555555553 468999999999999999999999
Q ss_pred HHHHHHHH
Q 046315 332 RNLVMKEI 339 (353)
Q Consensus 332 R~lVl~~I 339 (353)
|..==+++
T Consensus 466 ~kkrKkht 473 (516)
T KOG4191|consen 466 RKKRKKHT 473 (516)
T ss_pred HHhhcccc
Confidence 96543333
No 22
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=43.15 E-value=55 Score=26.82 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhhhhh-hhhhHHhHHHH
Q 046315 215 SHALALLVAAPGLIA-ASLELASTRRL 240 (353)
Q Consensus 215 ~hala~l~a~P~~~~-~~~~~~~k~~l 240 (353)
..+++|+.++-+++| .++..|.+|++
T Consensus 61 plAv~GlgsalGI~G~q~vE~~lrr~~ 87 (89)
T PF04550_consen 61 PLAVIGLGSALGIAGYQAVEAWLRRRL 87 (89)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 344557777766666 56666766654
No 23
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=43.10 E-value=1.7e+02 Score=23.42 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046315 294 QASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLV 335 (353)
Q Consensus 294 ~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~InrAR~lV 335 (353)
..+.++=++-+.....+..+++.|+.++..-..+|..+..++
T Consensus 61 ~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 61 QLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555667777888888888777777777776554
No 24
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=41.29 E-value=57 Score=29.03 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=39.8
Q ss_pred CchHHHHHHHhhHHHHHh---HHHHHhhHHHHHHhhhhHHHHHHhhhc
Q 046315 83 TPSLIFDYFTQTANASLF---FGPLLKDIDNVRIKYRSFKVIVNSLQN 127 (353)
Q Consensus 83 l~~Lv~~YFd~S~~a~~~---C~~L~k~I~~aR~~y~~i~~aL~~~~~ 127 (353)
|..|...|-..|.+|..| |+.|+.-=.+-..-...|..-|+.|+.
T Consensus 30 l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~ 77 (157)
T PF04136_consen 30 LDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEE 77 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 889999999999999887 999999888888888888888888775
No 25
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=40.53 E-value=5.4e+02 Score=28.39 Aligned_cols=44 Identities=27% Similarity=0.383 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHhhccchhh-------ccccccHHHHHHHHHHHHHhhH
Q 046315 236 STRRLVRVSTQLDAAAKGTYIL-------NRDLDTISRLVARLNDELEHMR 279 (353)
Q Consensus 236 ~k~~l~~l~~QldaaakGtyil-------~~DldTIs~LV~RL~~eIe~~~ 279 (353)
..+-+.++...+..++.|-+-. ...+|.|.++++.+.+-+..+.
T Consensus 356 i~~pL~~l~~~~~~ia~Gdl~~~~~~~~~~~e~dei~~l~~~~~~~~~~L~ 406 (914)
T PRK11466 356 VTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSNVHALN 406 (914)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777778887632 2345677777766665554433
No 26
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=40.46 E-value=1.1e+02 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHh
Q 046315 262 DTISRLVARLNDELEHMRSTVKFWLDR 288 (353)
Q Consensus 262 dTIs~LV~RL~~eIe~~~~~v~fal~~ 288 (353)
.....-+.=|.+.|||.=.+.+||+++
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN 53 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMEN 53 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 444445566777888888999999998
No 27
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=39.65 E-value=43 Score=27.96 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=14.2
Q ss_pred HHHHHhchhh----HHHhHHHHHHHHH
Q 046315 300 ARQLLKNDAS----FSQQLDELEEHLY 322 (353)
Q Consensus 300 v~elkk~~~~----f~~qleeLeehv~ 322 (353)
++.||++... -.++|++||+||+
T Consensus 74 L~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 74 LKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444 6677788888774
No 28
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=38.96 E-value=3.1e+02 Score=25.13 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHhhccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHhchh
Q 046315 236 STRRLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEV 291 (353)
Q Consensus 236 ~k~~l~~l~~QldaaakGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~ 291 (353)
.+.++..+..++..+.++.--+.-.-..+.+-++.+..+++.+-.-+..|+..|++
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~e 83 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGRE 83 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 44455556666777766666666666777888888888888888888999998775
No 29
>PRK09546 zntB zinc transporter; Reviewed
Probab=38.72 E-value=3.8e+02 Score=26.12 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=50.2
Q ss_pred CchHHHHHHHhhHHHHHhHHHHHhhHHHH----HHhhhhHHHHHHhhhcccCCCcccHHHHHHHHhchhhcCCCCCCCCC
Q 046315 83 TPSLIFDYFTQTANASLFFGPLLKDIDNV----RIKYRSFKVIVNSLQNAHALPINYVSSVVIRLTEFSNLSNPFASAAP 158 (353)
Q Consensus 83 l~~Lv~~YFd~S~~a~~~C~~L~k~I~~a----R~~y~~i~~aL~~~~~~~~~~~~~~~~~l~eL~~F~~~~nPF~~~f~ 158 (353)
+..++..||+.-.+.-+=...|+..|.+- +..-..+++-+..+.... .+. ..++..|. ...+|+-.+ .
T Consensus 148 ld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l--~p~--~~~l~~L~---~~~~~~~~~-~ 219 (324)
T PRK09546 148 CDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRYM--APQ--RDVFARLA---SERLPWMSD-D 219 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHH---hcCCcccCh-H
Confidence 67778888888877777777776666321 111112222222222100 000 12333333 333443212 2
Q ss_pred cchhHHHHHhhHHHHHHHHHHHHHHH
Q 046315 159 TTRRFRVVQAGCGKLLKQLESSRDKA 184 (353)
Q Consensus 159 ~~~~F~~v~~~~~~Ll~~L~~~k~K~ 184 (353)
....|++++++...+++.+++.+..+
T Consensus 220 ~~~~l~Dv~d~~~~~~~~l~~~~~~~ 245 (324)
T PRK09546 220 DRRRMQDIADRLGRGLDDLDACIART 245 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999988888888887776533
No 30
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.22 E-value=3.3e+02 Score=31.37 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=61.4
Q ss_pred HHHHHHHHHh----hccchhhccccccHHHHHHHHHHHHHhhHHHHHHH---HHh-chhhhchHHHHHHHHHhchhhHHH
Q 046315 241 VRVSTQLDAA----AKGTYILNRDLDTISRLVARLNDELEHMRSTVKFW---LDR-GEVRLQASGEVARQLLKNDASFSQ 312 (353)
Q Consensus 241 ~~l~~Qldaa----akGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fa---l~~-~~~~~~~vkevv~elkk~~~~f~~ 312 (353)
.-+++|+||+ +.=+-..-+-| ++..-|.-|+++|+-+-++-++- ++. .+-+ -.+++-++.++.+...+.+
T Consensus 434 adlkEQVDAAlGAE~MV~qLtdknl-nlEekVklLeetv~dlEalee~~EQL~Esn~ele-~DLreEld~~~g~~kel~~ 511 (1243)
T KOG0971|consen 434 ADLKEQVDAALGAEEMVEQLTDKNL-NLEEKVKLLEETVGDLEALEEMNEQLQESNRELE-LDLREELDMAKGARKELQK 511 (1243)
T ss_pred HHHHHHHHHhhcHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHH
Confidence 4477888876 22233333333 46667888888888776665432 121 1111 2345556666667777788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 046315 313 QLDELEEHLYLCFMTVNRARNLVM 336 (353)
Q Consensus 313 qleeLeehv~lCf~~InrAR~lVl 336 (353)
+++.=-||+|-..-||-+-|-+|-
T Consensus 512 r~~aaqet~yDrdqTI~KfRelva 535 (1243)
T KOG0971|consen 512 RVEAAQETVYDRDQTIKKFRELVA 535 (1243)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888999999999999998874
No 31
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=35.64 E-value=93 Score=31.34 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=37.2
Q ss_pred chHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046315 294 QASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLV 335 (353)
Q Consensus 294 ~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~InrAR~lV 335 (353)
+.+++--++|.+.+..+.+.++|+++.-..|...|.+-|.-+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrL 48 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRL 48 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777899999999999999999999999999999987654
No 32
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=34.54 E-value=4.5e+02 Score=25.73 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=15.7
Q ss_pred hhhHHhHHHHHHHHHHHHHhhccchhh
Q 046315 231 SLELASTRRLVRVSTQLDAAAKGTYIL 257 (353)
Q Consensus 231 ~~~~~~k~~l~~l~~QldaaakGtyil 257 (353)
|+..+..+-+.++...++.++.|-+-.
T Consensus 183 ~~~r~i~~pl~~l~~~~~~ia~gdl~~ 209 (457)
T TIGR01386 183 WITRLGLEPLRRLSAVAARISPESLDQ 209 (457)
T ss_pred HHHHHHhhHHHHHHHHHHHhcccCccc
Confidence 333334445566667777777776543
No 33
>PRK10869 recombination and repair protein; Provisional
Probab=33.58 E-value=6.2e+02 Score=27.04 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=27.7
Q ss_pred chhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046315 306 NDASFSQQLDELEEHLYLCFMTVNRARNLVMKEILD 341 (353)
Q Consensus 306 ~~~~f~~qleeLeehv~lCf~~InrAR~lVl~~I~~ 341 (353)
....+.++++++.+....+...+..+|.-..+++..
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~ 377 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQ 377 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577778888888888888999999887777654
No 34
>PHA03332 membrane glycoprotein; Provisional
Probab=33.52 E-value=8.6e+02 Score=28.67 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 046315 321 LYLCFMTVNRARNLVMKEILD 341 (353)
Q Consensus 321 v~lCf~~InrAR~lVl~~I~~ 341 (353)
+-++.-.+|.--..|.|-+++
T Consensus 981 aalyYQQlnsltnqv~~sask 1001 (1328)
T PHA03332 981 AALYYQQLNSLTNQVTQSASK 1001 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776655
No 35
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.66 E-value=2.8e+02 Score=24.05 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=5.7
Q ss_pred HHhchhhHHHhHHHHH
Q 046315 303 LLKNDASFSQQLDELE 318 (353)
Q Consensus 303 lkk~~~~f~~qleeLe 318 (353)
++.....+-.-+..||
T Consensus 101 i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 101 IGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 36
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=32.26 E-value=5.2e+02 Score=25.70 Aligned_cols=38 Identities=13% Similarity=0.365 Sum_probs=22.7
Q ss_pred HHHHHHHhhccchhhccccccHHHHHHHHHHHHHhhHH
Q 046315 243 VSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRS 280 (353)
Q Consensus 243 l~~QldaaakGtyil~~DldTIs~LV~RL~~eIe~~~~ 280 (353)
+.+.++.+...--.+.+++.-++.++..|.+.-+..+.
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~ 186 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEE 186 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446666666666777777777776665554444333
No 37
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=32.12 E-value=2.5e+02 Score=31.93 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=50.4
Q ss_pred hhccccccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 046315 256 ILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARN 333 (353)
Q Consensus 256 il~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~InrAR~ 333 (353)
.+.+.|||...-+.|-.-.+|.-.+.+..+...-......++..+.|-|.+.++|-+.+.|||..=+.-.+++.+-+-
T Consensus 295 ~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e 372 (1265)
T KOG0976|consen 295 ELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQE 372 (1265)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555555555555544444444444333222111125688889999999999999999999998888888776543
No 38
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=30.62 E-value=3e+02 Score=22.45 Aligned_cols=52 Identities=8% Similarity=0.125 Sum_probs=25.3
Q ss_pred HHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHH
Q 046315 270 RLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTV 328 (353)
Q Consensus 270 RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~I 328 (353)
|.+-.|++...|+ +.+.+| ..+-.-+.-.+.-...++..+ |+.|+..|...-
T Consensus 17 RIeGQv~gI~~Mi----ee~~~C-~dIl~Ql~Avr~Al~~~~~~v--l~~hl~~cv~~~ 68 (90)
T PRK15039 17 KIQGQVVALKKML----DEPHEC-AAVLQQIAAIRGAVNGLMREV--IKGHLTEHIVHQ 68 (90)
T ss_pred HHHHHHHHHHHHH----HCCCCH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcc
Confidence 3333444444443 444454 222222334444444555544 778888776643
No 39
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.07 E-value=2.1e+02 Score=22.50 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=10.6
Q ss_pred cccccHHHHHHHHHHHHHhhHHHHH
Q 046315 259 RDLDTISRLVARLNDELEHMRSTVK 283 (353)
Q Consensus 259 ~DldTIs~LV~RL~~eIe~~~~~v~ 283 (353)
++.+.+-.-++.+-+.+++...-++
T Consensus 47 ~e~~~ll~~~n~l~~dv~~k~~~v~ 71 (90)
T PF06103_consen 47 KEINDLLHNTNELLEDVNEKLEKVD 71 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344444444444444444444443
No 40
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=29.87 E-value=2.7e+02 Score=21.76 Aligned_cols=60 Identities=18% Similarity=0.392 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHH
Q 046315 262 DTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLY 322 (353)
Q Consensus 262 dTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~ 322 (353)
|.+..+=..+++--+-|..+++-.++||+.- +.+..=-++|......|.++-.+|....+
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L-~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKL-EELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455566667777778889999999998764 67777778888888888888888877654
No 41
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=29.82 E-value=3.5e+02 Score=23.02 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhh-hhHHHHHHHHHHH
Q 046315 172 KLLKQLESSRDKARARLQLINITKHGS-ATFLLAITISLTV 211 (353)
Q Consensus 172 ~Ll~~L~~~k~K~~kKlk~~r~~~~vs-~~~fvaa~~av~i 211 (353)
.|-+.++....++.+.+..++..-.++ .++|++++...+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~i~~~aP~lGLlGTv~Gmi~ 79 (139)
T PF01618_consen 39 AMEEALEREEERLERNLSILRTIASIAPLLGLLGTVIGMIE 79 (139)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667777777776666555 3455555544443
No 42
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=29.61 E-value=5.1e+02 Score=24.85 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=22.3
Q ss_pred chhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 046315 160 TRRFRVVQAGCGKLLKQLESSRDKARAR 187 (353)
Q Consensus 160 ~~~F~~v~~~~~~Ll~~L~~~k~K~~kK 187 (353)
...|++++++...+.+.++..+..+..-
T Consensus 215 ~~~~~dv~~~~~~l~~~~~~~~e~l~~l 242 (318)
T TIGR00383 215 REYLRDIYDHILSLLEMIETYRELLSSL 242 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999888888888888877554
No 43
>COG5346 Predicted membrane protein [Function unknown]
Probab=29.61 E-value=3.9e+02 Score=23.41 Aligned_cols=68 Identities=13% Similarity=0.096 Sum_probs=41.2
Q ss_pred CCCCCCCcchhHHHHH----hhHHHHHHHHHHHHHHHHHHhhhh-hh---hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046315 152 PFASAAPTTRRFRVVQ----AGCGKLLKQLESSRDKARARLQLI-NI---TKHGSATFLLAITISLTVIVASHALAL 220 (353)
Q Consensus 152 PF~~~f~~~~~F~~v~----~~~~~Ll~~L~~~k~K~~kKlk~~-r~---~~~vs~~~fvaa~~av~i~IA~hala~ 220 (353)
|.+.. ....++.+|| ++.+-|-+|=+..|.++++|.--+ +. ..+.+.+|+..-...+++.|....+++
T Consensus 37 ~LPpp-~~l~qYnsI~pnt~~rimaMAekEQahrH~~~~k~~~~q~r~~~~~~~tril~liFgi~LVvsi~~~tla~ 112 (136)
T COG5346 37 ILPPP-DLLSQYNSIYPNTLQRIMAMAEKEQAHRHAIDLKNLKIQRRGQLYAKLTRILLLIFGIFLVVSIFPKTLAS 112 (136)
T ss_pred cCCCH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55532 2257888885 678889999999999998885333 22 345555555544444444444333333
No 44
>PHA00649 hypothetical protein
Probab=29.38 E-value=1.6e+02 Score=23.26 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=23.1
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046315 185 RARLQLINITKHGSATFLLAITISLTVIVASHALALLV 222 (353)
Q Consensus 185 ~kKlk~~r~~~~vs~~~fvaa~~av~i~IA~hala~l~ 222 (353)
+.-++..|.|||.---.|++.++-++++|.+.-.+|+-
T Consensus 40 r~D~~~~Rr~RKA~D~G~L~~VGL~~~~iGAA~W~G~~ 77 (83)
T PHA00649 40 REDLRFGRRMRKAADHGFLALVGLVAVALGAAVWAGIT 77 (83)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777777776666665543334443
No 45
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=28.56 E-value=1.3e+02 Score=26.56 Aligned_cols=55 Identities=22% Similarity=0.099 Sum_probs=25.8
Q ss_pred hhhhhhHHHHHHHHHHHH-----------HHHHHHHHHH---hhhhhhhhhhhH--H--hHHHHHHHHHHHHH
Q 046315 195 KHGSATFLLAITISLTVI-----------VASHALALLV---AAPGLIAASLEL--A--STRRLVRVSTQLDA 249 (353)
Q Consensus 195 ~~vs~~~fvaa~~av~i~-----------IA~hala~l~---a~P~~~~~~~~~--~--~k~~l~~l~~Qlda 249 (353)
--|-|+++|++..+.+.. ++.+|+.|++ +....|..+|.+ | .|+-+.-...|+|-
T Consensus 68 l~VlGiiLviagl~l~fil~~~lg~naf~~~IPAviGlvkll~ts~~m~~~Cs~EKw~lck~~l~t~EDilDd 140 (150)
T PF05745_consen 68 LVVLGIILVIAGLALTFILHSQLGNNAFLFIIPAVIGLVKLLITSLCMEESCSPEKWKLCKRWLGTLEDILDD 140 (150)
T ss_pred HHHHHHHHHHHHHHHHhhehhhhcCccchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 345566666665444322 3355555542 333334444433 3 34444434456654
No 46
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=27.79 E-value=4.4e+02 Score=23.48 Aligned_cols=66 Identities=18% Similarity=0.362 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHh--hccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHh--chhhhchHHHHHHHHHhchhh---
Q 046315 237 TRRLVRVSTQLDAA--AKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDR--GEVRLQASGEVARQLLKNDAS--- 309 (353)
Q Consensus 237 k~~l~~l~~Qldaa--akGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~--~~~~~~~vkevv~elkk~~~~--- 309 (353)
+..+..+-++|+.. .||.|+.+ ...|..| |.+.+ ..+ .++.+-++++......
T Consensus 65 ~~~Lq~L~~rL~~le~~rg~Y~Ti-----------------SeLKT~v-y~i~q~l~~~--~P~Ee~Lrql~~~~~~~~~ 124 (148)
T PF12486_consen 65 MTQLQQLADRLNQLEEQRGKYMTI-----------------SELKTAV-YQIQQSLNQS--VPLEEQLRQLQQQKEQGQP 124 (148)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeH-----------------HHHHHHH-HHHHHHhcCC--CCHHHHHHHHHHHHHcCCC
Confidence 34567777788887 58999973 2223333 44443 122 4677878877766432
Q ss_pred HHHhHHHHHHHHH
Q 046315 310 FSQQLDELEEHLY 322 (353)
Q Consensus 310 f~~qleeLeehv~ 322 (353)
-...++.+++|+.
T Consensus 125 ~~a~l~qi~~~l~ 137 (148)
T PF12486_consen 125 PSALLKQIDNRLN 137 (148)
T ss_pred hHHHHHHHHHHHH
Confidence 1134444444443
No 47
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=27.00 E-value=64 Score=29.61 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=19.7
Q ss_pred HHHHHhchhhHHHhHHHHHHHHHHH
Q 046315 300 ARQLLKNDASFSQQLDELEEHLYLC 324 (353)
Q Consensus 300 v~elkk~~~~f~~qleeLeehv~lC 324 (353)
++.-|+....|++|++|||.|+-.+
T Consensus 107 lq~mr~~ln~FR~qm~dlE~~l~~Q 131 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLELHLMRQ 131 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777888999999999887544
No 48
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=26.71 E-value=46 Score=25.57 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=26.1
Q ss_pred chHHHHHHH-----hhHHHHHhHHHHHhhHHHHHHhhhhH
Q 046315 84 PSLIFDYFT-----QTANASLFFGPLLKDIDNVRIKYRSF 118 (353)
Q Consensus 84 ~~Lv~~YFd-----~S~~a~~~C~~L~k~I~~aR~~y~~i 118 (353)
..|++.|.. .+.+|+|+|..+++|+++-+.+...+
T Consensus 14 M~LlSs~l~p~~~~d~~kaldiCaeIL~cLE~R~isWl~L 53 (64)
T PF03511_consen 14 MGLLSSYLAPKEGADSLKALDICAEILGCLEKRKISWLVL 53 (64)
T ss_pred HHHHHHhcCcccccccHHHHHHHHHHHHHHHhCCCcHHHh
Confidence 345555553 56799999999999999987766543
No 49
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=26.68 E-value=60 Score=27.26 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=16.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHH
Q 046315 192 NITKHGSATFLLAITISLTVIVAS 215 (353)
Q Consensus 192 r~~~~vs~~~fvaa~~av~i~IA~ 215 (353)
|.|.-.-|++++|.+.+++|++|+
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777776664
No 50
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.21 E-value=2.4e+02 Score=22.14 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.6
Q ss_pred hchHHHHHHHHHhchhhHHHhHHHHHH
Q 046315 293 LQASGEVARQLLKNDASFSQQLDELEE 319 (353)
Q Consensus 293 ~~~vkevv~elkk~~~~f~~qleeLee 319 (353)
++..+.++...+.+.+.+..+|.+||.
T Consensus 52 Fd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 52 FDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478888999999999999999999985
No 51
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=26.14 E-value=5.7e+02 Score=24.28 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=54.8
Q ss_pred hHHHHHHHhhHHHHHhHHHHHhhHHHHHHhhhhHHHHHHhhhcccCCCcccHHHHHHHHhchhhcCCCCCCCCCcchhHH
Q 046315 85 SLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQNAHALPINYVSSVVIRLTEFSNLSNPFASAAPTTRRFR 164 (353)
Q Consensus 85 ~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~y~~i~~aL~~~~~~~~~~~~~~~~~l~eL~~F~~~~nPF~~~f~~~~~F~ 164 (353)
+|+.-|=++...-++.|+.|+++.+|+=..|.-+-.|-+.+ -..|..|....=|+..+ -..-.
T Consensus 2 ~l~~v~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~--------------s~~l~~~~~~~~~~~~~---D~~v~ 64 (215)
T cd07632 2 SLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQL--------------SKQLLAYEKQNFALGKG---DEEVI 64 (215)
T ss_pred cHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHHHHHhcCCCCCC---cHHHH
Confidence 57777778888889999999999999877776665555433 33445555555566632 35566
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 046315 165 VVQAGCGKLLKQLESSRD 182 (353)
Q Consensus 165 ~v~~~~~~Ll~~L~~~k~ 182 (353)
....+++..|..|..-+.
T Consensus 65 ~sL~kFs~~L~el~~~h~ 82 (215)
T cd07632 65 STLQYFAKVVDELNVLHS 82 (215)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666677777776654444
No 52
>PRK11352 regulator protein FrmR; Provisional
Probab=25.89 E-value=3.6e+02 Score=21.90 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 046315 266 RLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVN---RARNLVMKEIL 340 (353)
Q Consensus 266 ~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~In---rAR~lVl~~I~ 340 (353)
.++.||+ .|++-..-+.-.++++++| ..+-.=+.-.+.-..+++. .=||.|+..|...-. .-+...++++.
T Consensus 10 ~ll~RL~-Ri~GQv~gi~~Mie~~~~C-~dil~Ql~Avr~Al~~~~~--~ile~hl~~cv~~~~~~~~~~~~~i~el~ 83 (91)
T PRK11352 10 KVLTRVR-RIRGQIDALERSLEGDAEC-RAILQQIAAVRGAANGLMA--EVLESHIRETFDRNDCYSREVSQSVDDTI 83 (91)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhccCccchHHHHHHHH
Confidence 3444443 2333333333444565555 2221223333333333333 348899999998874 12455555554
No 53
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=25.69 E-value=68 Score=21.98 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.6
Q ss_pred HHHHHHHhchhhHHHhHHHHHH
Q 046315 298 EVARQLLKNDASFSQQLDELEE 319 (353)
Q Consensus 298 evv~elkk~~~~f~~qleeLee 319 (353)
-+++||.|-..++...++|||+
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 4689999999999999999985
No 54
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=25.26 E-value=5.4e+02 Score=23.65 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=10.7
Q ss_pred chHHHHHHHHHhchhh
Q 046315 294 QASGEVARQLLKNDAS 309 (353)
Q Consensus 294 ~~vkevv~elkk~~~~ 309 (353)
+....+++++.++.+.
T Consensus 97 ~~a~~i~~~l~~~~~~ 112 (213)
T PF01988_consen 97 EDAEEIAEELSKDKDA 112 (213)
T ss_pred HHHHHHHHHHHhCchH
Confidence 4566777777776664
No 55
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=24.99 E-value=6.5e+02 Score=24.91 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=39.8
Q ss_pred HHHHHHHHHHh----hccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHH
Q 046315 240 LVRVSTQLDAA----AKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLD 287 (353)
Q Consensus 240 l~~l~~Qldaa----akGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~ 287 (353)
++.+++|+|.. .+|--.+.+|-.+++.|-..+.+.+..+...+.++-.
T Consensus 93 y~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~ 144 (333)
T PF05816_consen 93 YQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGEL 144 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35588888876 6888899999999999999999999888888766633
No 56
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=24.87 E-value=4.5e+02 Score=22.57 Aligned_cols=11 Identities=45% Similarity=0.407 Sum_probs=7.2
Q ss_pred HHHHHHHhhhh
Q 046315 216 HALALLVAAPG 226 (353)
Q Consensus 216 hala~l~a~P~ 226 (353)
.+++||+.+|-
T Consensus 18 Ga~aaLL~AP~ 28 (115)
T COG4980 18 GAAAALLFAPK 28 (115)
T ss_pred HHHHHHHhCCc
Confidence 45667777774
No 57
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.75 E-value=1.4e+02 Score=29.52 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=31.0
Q ss_pred HhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHHH
Q 046315 276 EHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRA 331 (353)
Q Consensus 276 e~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~InrA 331 (353)
|..+--+++|++..+.+ |+|||.-.+.-...|-|=...|-.+|.+||--
T Consensus 109 ECHRVEAQLALKEARkE-------IkQLkQvieTmrssL~ekDkGiQKYFvDINiQ 157 (305)
T PF15290_consen 109 ECHRVEAQLALKEARKE-------IKQLKQVIETMRSSLAEKDKGIQKYFVDINIQ 157 (305)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhchhhhhHHHHHhhhhhh
Confidence 34455556666653332 45555555556666667788899999999843
No 58
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=24.35 E-value=4.8e+02 Score=22.74 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHH--------HHhchhhhchHHHHHHHHHhchhhHHHhHHHHH
Q 046315 262 DTISRLVARLNDELEHMRSTVKFW--------LDRGEVRLQASGEVARQLLKNDASFSQQLDELE 318 (353)
Q Consensus 262 dTIs~LV~RL~~eIe~~~~~v~fa--------l~~~~~~~~~vkevv~elkk~~~~f~~qleeLe 318 (353)
|.+...|..+.+.+.+-..-++-+ +.+=. -+.+.-|++|......+..+|+.|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLg---vPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 68 DQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLG---VPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666655544444333 33311 3456667777777777777777665
No 59
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=24.03 E-value=1.2e+02 Score=29.26 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=41.2
Q ss_pred hccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHH
Q 046315 251 AKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVAR 301 (353)
Q Consensus 251 akGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~ 301 (353)
.-+-.++.|-|..++.-.+|+++++++.++.++..+-.|-.+.++++..+|
T Consensus 128 Pi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat~~eA~~~~~r 178 (250)
T PF03649_consen 128 PIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGATPREAVRPFIR 178 (250)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHH
Confidence 446677889999999999999999999999999999997654345544444
No 60
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=23.36 E-value=4.1e+02 Score=27.48 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046315 265 SRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEIL 340 (353)
Q Consensus 265 s~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~InrAR~lVl~~I~ 340 (353)
-.-+.+|+|.+|..++-|+-+-+. -...+.+|-+--..+|+.++ ||+.=+-+-.+-|.+.+++|.
T Consensus 176 peq~kKlqdrveK~k~evqktkek-------Yektl~el~~yt~~YmE~Me----qvFe~CQ~fE~~Rl~Ffkeil 240 (472)
T KOG2856|consen 176 PEQLKKLQDRVEKCKQEVQKTKEK-------YEKTLAELNKYTPVYMEDME----QVFEQCQQFEEKRLQFFKEIL 240 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhccCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999998776443 34678899999999988774 677777788889999888884
No 61
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.61 E-value=1.7e+02 Score=23.51 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=13.5
Q ss_pred HHHHHHHHHhchhhHHHhHHHHHHHHH
Q 046315 296 SGEVARQLLKNDASFSQQLDELEEHLY 322 (353)
Q Consensus 296 vkevv~elkk~~~~f~~qleeLeehv~ 322 (353)
++..-++|+........+|+||++-|.
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555443
No 62
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=22.02 E-value=4.2e+02 Score=23.15 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=12.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 046315 195 KHGSATFLLAITISLTVIVAS 215 (353)
Q Consensus 195 ~~vs~~~fvaa~~av~i~IA~ 215 (353)
-.++...|+++++.+++-++.
T Consensus 11 ~~gs~~~f~~~~~~Ii~W~i~ 31 (132)
T PF04120_consen 11 VAGSPWAFVIAVAVIIVWAIS 31 (132)
T ss_pred HHCCHHHHHHHHHHHHHHHHH
Confidence 345666677666666655443
No 63
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=21.63 E-value=2.7e+02 Score=26.80 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=20.5
Q ss_pred HHHHHHHHhchhhHHHhHHHHHHH--HHHHHHHHHH
Q 046315 297 GEVARQLLKNDASFSQQLDELEEH--LYLCFMTVNR 330 (353)
Q Consensus 297 kevv~elkk~~~~f~~qleeLeeh--v~lCf~~Inr 330 (353)
.+-|.+|......++++.|+|++. |..+-..+..
T Consensus 122 ~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~ 157 (254)
T PF03194_consen 122 AEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEE 157 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345666777777777777777663 4444444433
No 64
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=21.53 E-value=3.3e+02 Score=23.97 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHH
Q 046315 264 ISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVN 329 (353)
Q Consensus 264 Is~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~In 329 (353)
...+..+|.--.++....+.||+++.+-.-+...-.++++.+..-+=+-.|==+=||+|.|+....
T Consensus 10 F~~~L~~L~aS~qSi~kaa~fAlk~~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~ 75 (139)
T PF12243_consen 10 FTQLLRRLNASQQSIQKAAQFALKNRDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSK 75 (139)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHccccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999999933221456668889988866656666666667777776655
No 65
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=21.50 E-value=9.5e+02 Score=26.30 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=28.9
Q ss_pred hccchhhcccccc------HHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHH
Q 046315 251 AKGTYILNRDLDT------ISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQ 312 (353)
Q Consensus 251 akGtyil~~DldT------Is~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~ 312 (353)
+.|-|+-..=.|| |+.|..| ..+..+|+..-. + +.+++++.+-++.++....
T Consensus 645 q~Gk~~~p~~~~~~~~t~~~~~l~~r--------~elLs~aL~~cP-~-~~l~~iL~~W~~~e~el~~ 702 (715)
T PF08314_consen 645 QVGKYRSPEWFDNEIPTEIIRDLEQR--------MELLSFALRHCP-P-DNLEEILAQWRRLEEELDT 702 (715)
T ss_dssp HHHH---TTSGGG---HHH---HHHH--------HHHHHHHHHHS--G-GGHHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCcccccCcchhhHHHHHH--------HHHHHHHHHhCC-H-HHHHHHHHHHHHHHHHHHH
Confidence 6788876555555 4444443 345566666633 3 6799999988877665544
No 66
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=21.32 E-value=4.7e+02 Score=21.59 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=25.2
Q ss_pred HHHHHHHhhccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHh
Q 046315 243 VSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDR 288 (353)
Q Consensus 243 l~~QldaaakGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~ 288 (353)
+.++++.+. .+|-.+|.+.=....+.|...-+..+....|-+++
T Consensus 28 i~~~l~~i~--~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h 71 (121)
T PF14276_consen 28 IEEQLEQIE--EAIENEDWEKAYKETEELEKEWDKNKKRWSILIEH 71 (121)
T ss_pred HHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecH
Confidence 444444443 34555666666666666666666666666666555
No 67
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.32 E-value=4.6e+02 Score=21.41 Aligned_cols=9 Identities=67% Similarity=1.032 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 046315 317 LEEHLYLCF 325 (353)
Q Consensus 317 Leehv~lCf 325 (353)
|++|+..|.
T Consensus 57 l~~hl~~cv 65 (89)
T COG1937 57 LEEHLKECV 65 (89)
T ss_pred HHHHHHHHH
Confidence 455555555
No 68
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.21 E-value=3.9e+02 Score=20.51 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=38.7
Q ss_pred ccccccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHH
Q 046315 258 NRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHL 321 (353)
Q Consensus 258 ~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv 321 (353)
...++.|..+..+|..+|+....-.+--|-+.=..+-..-..|..++.....+...|.+|...+
T Consensus 18 ~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 18 NSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSI 81 (87)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888777666555554111112233345556666666666666666554
No 69
>PRK11020 hypothetical protein; Provisional
Probab=20.75 E-value=4.3e+02 Score=22.72 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHH
Q 046315 264 ISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEE 319 (353)
Q Consensus 264 Is~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLee 319 (353)
+..-+.+|+|.++..+.--.-+..+|+. +++.++.+....+..+++-|-.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~------~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA------EKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888877778777654 5667777777777777776643
No 70
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=20.69 E-value=4.3e+02 Score=20.91 Aligned_cols=52 Identities=12% Similarity=0.237 Sum_probs=27.0
Q ss_pred HHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHH
Q 046315 270 RLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTV 328 (353)
Q Consensus 270 RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~I 328 (353)
|.+-.|++...|+ +.+++| ..+-.=+.-.++-...+...+ |++|+..|+...
T Consensus 13 rIeGQv~gI~~Mi----ee~~~C-~dIl~Qi~Av~~Al~~~~~~v--l~~hl~~c~~~~ 64 (85)
T PF02583_consen 13 RIEGQVRGIERMI----EEDRDC-EDILQQIAAVRSALDKVGKLV--LEDHLEHCLVEA 64 (85)
T ss_dssp HHHHHHHHHHHHH----HTTE-H-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHH----hCCCCH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhH
Confidence 3334444444444 555555 222222444455555555544 789999998744
No 71
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.60 E-value=7.5e+02 Score=23.65 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHHHHHhhccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhH
Q 046315 235 ASTRRLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQL 314 (353)
Q Consensus 235 ~~k~~l~~l~~QldaaakGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~ql 314 (353)
|+++.++.+..+......-.=-+-.++..++..+..|..++++........ ++ .+.++=.++......|...|
T Consensus 192 ~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~L-e~------~l~~le~~~~~~~~~~~~~i 264 (312)
T PF00038_consen 192 WYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASL-ER------QLRELEQRLDEEREEYQAEI 264 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhh-hh------hHHHHHHHHHHHHHHHHHhh
Confidence 444444444444333222222234566777888888888888877665333 22 23344444455555556666
Q ss_pred HHHHHHHHHH
Q 046315 315 DELEEHLYLC 324 (353)
Q Consensus 315 eeLeehv~lC 324 (353)
.+||..+...
T Consensus 265 ~~le~el~~l 274 (312)
T PF00038_consen 265 AELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHH
T ss_pred hccchhHHHH
Confidence 6665555443
No 72
>PLN02372 violaxanthin de-epoxidase
Probab=20.30 E-value=6.4e+02 Score=26.44 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q 046315 267 LVARLNDELEH 277 (353)
Q Consensus 267 LV~RL~~eIe~ 277 (353)
||+||.+.+|.
T Consensus 362 l~~~l~~~~e~ 372 (455)
T PLN02372 362 LLERLEKDVEE 372 (455)
T ss_pred HHHHHHHHHHH
Confidence 45555444443
No 73
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.13 E-value=6.3e+02 Score=26.88 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 046315 264 ISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEILDPG 343 (353)
Q Consensus 264 Is~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~InrAR~lVl~~I~~~~ 343 (353)
-.+-|+||-+.++..+..++-+.. ..+.+..+...+.+++.+++-.+..--.....-+..+-+.|++.
T Consensus 430 SprYvdrl~~~L~qk~~~~~k~~~-----------~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~- 497 (507)
T PF05600_consen 430 SPRYVDRLVESLQQKLKQEEKLRR-----------KREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKR- 497 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345556666666655555543332 23444445555566666666666655444555555666666664
Q ss_pred CCCcccCCCC
Q 046315 344 QSTTRDLNMM 353 (353)
Q Consensus 344 ~~~~~~~~~~ 353 (353)
=.+|-.|+|
T Consensus 498 -y~gR~Vnim 506 (507)
T PF05600_consen 498 -YKGRPVNIM 506 (507)
T ss_pred -cCCCeeecc
Confidence 224666665
Done!