Query 046315
Match_columns 353
No_of_seqs 98 out of 104
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 18:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twe_A Alpha4H; unknown functi 72.5 2.7 9.1E-05 25.4 2.4 17 174-190 10-26 (27)
2 3ol1_A Vimentin; structural ge 54.6 77 0.0026 25.7 9.0 86 233-322 15-100 (119)
3 3zcc_A HAMP, osmolarity sensor 53.9 32 0.0011 25.3 6.3 49 231-279 2-54 (114)
4 4ev6_A Magnesium transport pro 44.9 2E+02 0.0068 26.9 12.5 39 148-187 225-263 (339)
5 2f93_B Sensory rhodopsin II tr 37.4 32 0.0011 28.5 4.0 37 228-266 77-113 (122)
6 1deq_A Fibrinogen (alpha chain 34.8 1.4E+02 0.0047 29.3 8.6 66 251-327 97-163 (390)
7 1zza_A Stannin, AG8_1; helix, 34.4 35 0.0012 26.0 3.5 8 228-235 32-39 (90)
8 3t98_B Nucleoporin NUP58/NUP45 34.0 38 0.0013 26.7 3.8 33 294-326 8-40 (93)
9 3swk_A Vimentin; cytoskeleton, 32.7 1.6E+02 0.0054 22.5 7.2 77 242-322 4-80 (86)
10 2iub_A CORA, divalent cation t 30.7 3.4E+02 0.012 25.5 13.2 28 160-187 260-287 (363)
11 3mtu_E Head morphogenesis prot 30.2 49 0.0017 25.3 3.7 26 297-322 29-54 (77)
12 4adz_A CSOR; transcription, co 29.2 1.8E+02 0.0061 24.5 7.3 52 239-290 57-116 (136)
13 2p22_A Suppressor protein STP2 27.5 2.7E+02 0.0094 24.2 8.6 76 266-349 27-102 (174)
14 1deq_A Fibrinogen (alpha chain 24.0 2E+02 0.0068 28.3 7.6 35 295-329 96-130 (390)
15 3nvo_A Zinc transport protein 22.4 3.6E+02 0.012 23.6 8.8 89 83-186 153-252 (264)
16 3okq_A BUD site selection prot 22.3 1.6E+02 0.0054 25.0 5.8 37 247-283 42-78 (141)
17 3tnu_A Keratin, type I cytoske 22.2 3.2E+02 0.011 22.1 9.2 25 258-282 37-61 (131)
18 4fla_A Regulation of nuclear P 21.6 3.1E+02 0.011 23.2 7.6 73 240-322 70-145 (152)
19 4g3b_A Alpha4F3D; alpha helix, 20.8 1.4E+02 0.0047 17.7 3.5 13 177-189 13-25 (26)
20 2r25_A Phosphorelay intermedia 20.7 4.1E+02 0.014 22.9 8.6 65 83-151 28-93 (167)
21 4adz_A CSOR; transcription, co 20.5 2.6E+02 0.0089 23.5 6.7 61 263-330 53-113 (136)
22 2v4h_A NF-kappa-B essential mo 20.4 2.1E+02 0.007 23.3 5.8 74 240-315 26-107 (110)
23 4dnd_A Syntaxin-10, SYN10; str 20.3 1.8E+02 0.0061 24.0 5.7 26 297-322 66-91 (130)
24 3mq9_A Bone marrow stromal ant 20.1 2.3E+02 0.0078 27.4 7.4 34 296-329 395-428 (471)
25 2dfs_A Myosin-5A; myosin-V, in 20.1 2.8E+02 0.0096 30.7 8.8 65 258-322 976-1047(1080)
No 1
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=72.48 E-value=2.7 Score=25.37 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 046315 174 LKQLESSRDKARARLQL 190 (353)
Q Consensus 174 l~~L~~~k~K~~kKlk~ 190 (353)
|+.|+.+.+|+++|++.
T Consensus 10 ledlqerlrklrkklrs 26 (27)
T 3twe_A 10 LEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45566667778877763
No 2
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.63 E-value=77 Score=25.70 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=52.5
Q ss_pred hHHhHHHHHHHHHHHHHhhccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHH
Q 046315 233 ELASTRRLVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQ 312 (353)
Q Consensus 233 ~~~~k~~l~~l~~QldaaakGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~ 312 (353)
++....+++.+..|+|.+.+..--+.-++|++...++.+...-|.-...- -.+++ + +..++-++++.-=....+..
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r-~~~E~--d-i~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR-EEAEN--T-LQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--H-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHH--H-HHHhhhcccHHHHHHHHHHH
Confidence 44456677889999998865444455578888888877776666544332 12222 1 14455566665555566666
Q ss_pred hHHHHHHHHH
Q 046315 313 QLDELEEHLY 322 (353)
Q Consensus 313 qleeLeehv~ 322 (353)
+++-|.|-+.
T Consensus 91 ~iesL~eEl~ 100 (119)
T 3ol1_A 91 KVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 3
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=53.85 E-value=32 Score=25.29 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=23.7
Q ss_pred hhhHHhHHHHHHHHHHHHHhhccchhh---ccc-cccHHHHHHHHHHHHHhhH
Q 046315 231 SLELASTRRLVRVSTQLDAAAKGTYIL---NRD-LDTISRLVARLNDELEHMR 279 (353)
Q Consensus 231 ~~~~~~k~~l~~l~~QldaaakGtyil---~~D-ldTIs~LV~RL~~eIe~~~ 279 (353)
|+..+..+-+.++...++.++.|-+-. ... -|-+..|...++.-.+...
T Consensus 2 ~~~~~i~~pl~~l~~~~~~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l~ 54 (114)
T 3zcc_A 2 SHMSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLK 54 (114)
T ss_dssp ---CTTHHHHHHHHHHHHHHHTTCTTCCCTTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 333334445566777777777786532 222 3445444444444433333
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=44.85 E-value=2e+02 Score=26.85 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=26.9
Q ss_pred hcCCCCCCCCCcchhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 046315 148 NLSNPFASAAPTTRRFRVVQAGCGKLLKQLESSRDKARAR 187 (353)
Q Consensus 148 ~~~nPF~~~f~~~~~F~~v~~~~~~Ll~~L~~~k~K~~kK 187 (353)
....|+..+ .....|+++++....+.+.++.-+..+..-
T Consensus 225 ~~~~~~~~~-~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l 263 (339)
T 4ev6_A 225 RKYLPITTK-EDRENFEDLYYDTLQLIDMSATYREVLTSM 263 (339)
T ss_dssp HSCBTTBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444422 224679999999999999888888777543
No 5
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=37.36 E-value=32 Score=28.52 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=0.9
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHhhccchhhccccccHHH
Q 046315 228 IAASLELASTRRLVRVSTQLDAAAKGTYILNRDLDTISR 266 (353)
Q Consensus 228 ~~~~~~~~~k~~l~~l~~QldaaakGtyil~~DldTIs~ 266 (353)
+|.|++.-.-+.+.++.++.+.++-|. +.-|++|-+|
T Consensus 77 vG~~lGR~t~~pL~rLs~~A~aIa~Gd--LDVdiet~RR 113 (122)
T 2f93_B 77 VAATLGGDTAASLSTLAAKASRMGDGD--LDVELETRRE 113 (122)
T ss_dssp HC-------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHcCC--CCCccccccc
Confidence 445555545556788888899999898 4456666554
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.77 E-value=1.4e+02 Score=29.35 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=45.0
Q ss_pred hccchhhccccccH-HHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHH
Q 046315 251 AKGTYILNRDLDTI-SRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMT 327 (353)
Q Consensus 251 akGtyil~~DldTI-s~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~ 327 (353)
=|+.+...+|.|++ ...-.-|+..|+.++..|+-= +. -|+.|+.+.......|.-||.-|+.|.+.
T Consensus 97 lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q----------~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~ 163 (390)
T 1deq_A 97 MRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ----------VQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRS 163 (390)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH----------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46666666776654 333345666666666665322 33 57888888888888999999999998764
No 7
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=34.36 E-value=35 Score=26.02 Aligned_cols=8 Identities=13% Similarity=-0.010 Sum_probs=6.0
Q ss_pred hhhhhhHH
Q 046315 228 IAASLELA 235 (353)
Q Consensus 228 ~~~~~~~~ 235 (353)
.||||++.
T Consensus 32 ~gcwcylr 39 (90)
T 1zza_A 32 LGCWCYLR 39 (90)
T ss_dssp HHHHTTTS
T ss_pred HHHHHHHH
Confidence 47999864
No 8
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=33.97 E-value=38 Score=26.66 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhchhhHHHhHHHHHHHHHHHHH
Q 046315 294 QASGEVARQLLKNDASFSQQLDELEEHLYLCFM 326 (353)
Q Consensus 294 ~~vkevv~elkk~~~~f~~qleeLeehv~lCf~ 326 (353)
+.....+.++++....+..++|+||.|+.-++.
T Consensus 8 ~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 8 DYFRVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 345567889999999999999999999887653
No 9
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=32.75 E-value=1.6e+02 Score=22.51 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=40.9
Q ss_pred HHHHHHHHhhccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHH
Q 046315 242 RVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHL 321 (353)
Q Consensus 242 ~l~~QldaaakGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv 321 (353)
.+..|++.+..-.--+.-++|++.-.|..+...-|.-.....- +++ + +..++-++++.-=+-..+..+++-|.+.+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~-~E~--d-~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREE-AEN--T-LQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--H-HHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--H-HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777763222222235666666666665555554433322 222 1 14455566666666666666666666655
Q ss_pred H
Q 046315 322 Y 322 (353)
Q Consensus 322 ~ 322 (353)
.
T Consensus 80 ~ 80 (86)
T 3swk_A 80 A 80 (86)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=30.73 E-value=3.4e+02 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=23.3
Q ss_pred chhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 046315 160 TRRFRVVQAGCGKLLKQLESSRDKARAR 187 (353)
Q Consensus 160 ~~~F~~v~~~~~~Ll~~L~~~k~K~~kK 187 (353)
...|+++++....+.+.++.-+..+..=
T Consensus 260 ~~~lrDv~d~~~~~~e~~~~~re~l~~l 287 (363)
T 2iub_A 260 VPYFRDVYDHTIQIADTVETFRDIVSGL 287 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999888877543
No 11
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=30.17 E-value=49 Score=25.32 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.3
Q ss_pred HHHHHHHHhchhhHHHhHHHHHHHHH
Q 046315 297 GEVARQLLKNDASFSQQLDELEEHLY 322 (353)
Q Consensus 297 kevv~elkk~~~~f~~qleeLeehv~ 322 (353)
-+.+.|||-+-.+|.+.+++||+-++
T Consensus 29 ~~~~~~~~~~~~~~EKTIDDLEDkL~ 54 (77)
T 3mtu_E 29 TEALQQLRVNYGSFVSEYNDLEEKVA 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998763
No 12
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=29.20 E-value=1.8e+02 Score=24.49 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHh----hccchh--hccccccHHHHHHHHHHHH--HhhHHHHHHHHHhch
Q 046315 239 RLVRVSTQLDAA----AKGTYI--LNRDLDTISRLVARLNDEL--EHMRSTVKFWLDRGE 290 (353)
Q Consensus 239 ~l~~l~~Qldaa----akGtyi--l~~DldTIs~LV~RL~~eI--e~~~~~v~fal~~~~ 290 (353)
+|.++.+|++.. +.|.|- +..-+--++.-++++..+| +|++..+.-+++.|+
T Consensus 57 RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ILe~Hl~~CV~~ai~~g~ 116 (136)
T 4adz_A 57 RLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQLLEEHLRHCVADAALKGG 116 (136)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 567788997775 445552 2345556666677777766 677777777777654
No 13
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=27.46 E-value=2.7e+02 Score=24.19 Aligned_cols=76 Identities=9% Similarity=0.084 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 046315 266 RLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNRARNLVMKEILDPGQS 345 (353)
Q Consensus 266 ~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~InrAR~lVl~~I~~~~~~ 345 (353)
+++.++.+.+-+.-...+-++++.+ +.+....+.|+.-...+.++..+|+.++..+-..+ -.++++.+..++
T Consensus 27 ~~~~~~~e~l~~~q~~lq~sl~~~~---~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~-----~k~~e~~~~~~~ 98 (174)
T 2p22_A 27 EDVDYVADKILTRQTVMQESIARFH---EIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANR-----AKVQQFSSTSHV 98 (174)
T ss_dssp HHHHHHHHHTGGGGTTHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-----HHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCCC
Confidence 4556666777776666666666633 23444455555555555555555555555544422 235776655444
Q ss_pred Cccc
Q 046315 346 TTRD 349 (353)
Q Consensus 346 ~~~~ 349 (353)
+..|
T Consensus 99 ~~~d 102 (174)
T 2p22_A 99 DDED 102 (174)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 4333
No 14
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.05 E-value=2e+02 Score=28.26 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHH
Q 046315 295 ASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVN 329 (353)
Q Consensus 295 ~vkevv~elkk~~~~f~~qleeLeehv~lCf~~In 329 (353)
.++..+++...++..|.+-.+|||.|+-.-=.+|+
T Consensus 96 ~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 96 LMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666667777777777777665555443
No 15
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=22.43 E-value=3.6e+02 Score=23.64 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=53.1
Q ss_pred CchHHHHHHHhhHHHHHhHHHHHhhHHH-----------HHHhhhhHHHHHHhhhcccCCCcccHHHHHHHHhchhhcCC
Q 046315 83 TPSLIFDYFTQTANASLFFGPLLKDIDN-----------VRIKYRSFKVIVNSLQNAHALPINYVSSVVIRLTEFSNLSN 151 (353)
Q Consensus 83 l~~Lv~~YFd~S~~a~~~C~~L~k~I~~-----------aR~~y~~i~~aL~~~~~~~~~~~~~~~~~l~eL~~F~~~~n 151 (353)
+..++..||+.-.+--+--..|+..|.. .|..-..+++++.. . ..++..| ....+
T Consensus 153 ld~ivd~y~~~l~~l~~~id~lE~~l~~~~~~~l~~l~~lrr~l~~lrr~l~p--~---------~~vl~~L---~~~~~ 218 (264)
T 3nvo_A 153 CDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAP--Q---------RDVYARL---ASERL 218 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----CCCCTTHHHHHHHHHHHHHHHHHH--H---------HHHHHHH---TTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHh--H---------HHHHHHH---HhCCC
Confidence 6778888888877777777777666543 22222333333321 0 1233333 33344
Q ss_pred CCCCCCCcchhHHHHHhhHHHHHHHHHHHHHHHHH
Q 046315 152 PFASAAPTTRRFRVVQAGCGKLLKQLESSRDKARA 186 (353)
Q Consensus 152 PF~~~f~~~~~F~~v~~~~~~Ll~~L~~~k~K~~k 186 (353)
|+-.+ .....|+++++....+.+.++.-+..+..
T Consensus 219 ~~~~~-~~~~~l~Dv~d~~~~~~e~~~~~re~l~~ 252 (264)
T 3nvo_A 219 PWMSD-DHRRRMQDIADRLGRGLDEIDACIARTGI 252 (264)
T ss_dssp TTSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322 23567999999999999999888877643
No 16
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=22.29 E-value=1.6e+02 Score=24.97 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=30.9
Q ss_pred HHHhhccchhhccccccHHHHHHHHHHHHHhhHHHHH
Q 046315 247 LDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVK 283 (353)
Q Consensus 247 ldaaakGtyil~~DldTIs~LV~RL~~eIe~~~~~v~ 283 (353)
.|++.+|.-..-+-|++|..-+.++..+++.|...+.
T Consensus 42 kDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 42 KDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888899999888888888888888763
No 17
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.15 E-value=3.2e+02 Score=22.15 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=18.5
Q ss_pred ccccccHHHHHHHHHHHHHhhHHHH
Q 046315 258 NRDLDTISRLVARLNDELEHMRSTV 282 (353)
Q Consensus 258 ~~DldTIs~LV~RL~~eIe~~~~~v 282 (353)
-.++..+++-|.+|..+|++.+...
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~ 61 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMK 61 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3567788999999999999987665
No 18
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.59 E-value=3.1e+02 Score=23.18 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhccchhhccccccHHHHHHHHHHHHHhhHHHHHHHHHh---chhhhchHHHHHHHHHhchhhHHHhHHH
Q 046315 240 LVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELEHMRSTVKFWLDR---GEVRLQASGEVARQLLKNDASFSQQLDE 316 (353)
Q Consensus 240 l~~l~~QldaaakGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fal~~---~~~~~~~vkevv~elkk~~~~f~~qlee 316 (353)
.+++.++++-+. .-+...+.||..|++....+++.-..- .+.....++.++++-|++.......-.+
T Consensus 70 ~e~l~~~veeA~----------~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkke 139 (152)
T 4fla_A 70 AERLSKTVDEAC----------LLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKE 139 (152)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555543 123456889999999888777544222 1111134566777777777777777777
Q ss_pred HHHHHH
Q 046315 317 LEEHLY 322 (353)
Q Consensus 317 Leehv~ 322 (353)
|.+|+.
T Consensus 140 L~~hi~ 145 (152)
T 4fla_A 140 LKSHIQ 145 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 777763
No 19
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=20.77 E-value=1.4e+02 Score=17.75 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhh
Q 046315 177 LESSRDKARARLQ 189 (353)
Q Consensus 177 L~~~k~K~~kKlk 189 (353)
.+.+.+|.++||+
T Consensus 13 ~qerlrk~rkklr 25 (26)
T 4g3b_A 13 XQERLRKXRKKLR 25 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3344445555554
No 20
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=20.72 E-value=4.1e+02 Score=22.87 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=41.4
Q ss_pred CchHHHHHHHhhHHHHHhHHHHHhhHHHHHHhhhhHHHHHHhhhcccC-CCcccHHHHHHHHhchhhcCC
Q 046315 83 TPSLIFDYFTQTANASLFFGPLLKDIDNVRIKYRSFKVIVNSLQNAHA-LPINYVSSVVIRLTEFSNLSN 151 (353)
Q Consensus 83 l~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~y~~i~~aL~~~~~~~~-~~~~~~~~~l~eL~~F~~~~n 151 (353)
+..+|..||+.+.+.. ..|.+++. ....+.-+..+.|+|..... -+.......-.+|..+...+|
T Consensus 28 v~elV~~F~edse~~l---~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~~~C~~le~~~r~~n 93 (167)
T 2r25_A 28 SKGLIIQFIDQAQTTF---AQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKME 93 (167)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhHHHHH---HHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4689999999988643 34444444 22346788888888887543 333333345566666667777
No 21
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=20.47 E-value=2.6e+02 Score=23.46 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHH
Q 046315 263 TISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNR 330 (353)
Q Consensus 263 TIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~Inr 330 (353)
.+-.-++|.+-.|+....|+ +.+..|.+.+.+ +.-.++-...+...| |++|+.-|...-.+
T Consensus 53 ~ll~RLkRIeGQvrGI~rMI----Eedr~C~DIL~Q-laAVrsAL~~v~~~I--Le~Hl~~CV~~ai~ 113 (136)
T 4adz_A 53 EHLKRLRRIEGQIRGLQRMV----DEDVYCIDILTQ-VSASTKALQSFALQL--LEEHLRHCVADAAL 113 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HTTCCHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HcCCCHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33344556666666666666 555555222222 344455555555444 89999999876443
No 22
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.40 E-value=2.1e+02 Score=23.27 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhccchhhccccccHHHHHHHHHHHHH---hhHHH-----HHHHHHhchhhhchHHHHHHHHHhchhhHH
Q 046315 240 LVRVSTQLDAAAKGTYILNRDLDTISRLVARLNDELE---HMRST-----VKFWLDRGEVRLQASGEVARQLLKNDASFS 311 (353)
Q Consensus 240 l~~l~~QldaaakGtyil~~DldTIs~LV~RL~~eIe---~~~~~-----v~fal~~~~~~~~~vkevv~elkk~~~~f~ 311 (353)
+..|+.+|.+|.+-----..|.|.+..-+.++...+| -.++= .||-.+|. ++ +-+..-.++|......+.
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERa-dR-Ekl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERH-AR-EKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchh-hH-HHHHhHHHHHHHHHHHHH
Confidence 3445566666543333344555555555555555332 33332 26666663 22 334344455554444444
Q ss_pred HhHH
Q 046315 312 QQLD 315 (353)
Q Consensus 312 ~qle 315 (353)
.++.
T Consensus 104 ~q~~ 107 (110)
T 2v4h_A 104 REFN 107 (110)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
No 23
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.32 E-value=1.8e+02 Score=23.97 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=12.6
Q ss_pred HHHHHHHHhchhhHHHhHHHHHHHHH
Q 046315 297 GEVARQLLKNDASFSQQLDELEEHLY 322 (353)
Q Consensus 297 kevv~elkk~~~~f~~qleeLeehv~ 322 (353)
...-+||+........+|+||++-|.
T Consensus 66 ~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 66 DWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554444
No 24
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.14 E-value=2.3e+02 Score=27.37 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=26.4
Q ss_pred HHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHH
Q 046315 296 SGEVARQLLKNDASFSQQLDELEEHLYLCFMTVN 329 (353)
Q Consensus 296 vkevv~elkk~~~~f~~qleeLeehv~lCf~~In 329 (353)
.+.+...|.+......+.+-++|.++..|.+|+-
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVM 428 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHH
Confidence 4466677777888888888888888888888764
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.13 E-value=2.8e+02 Score=30.66 Aligned_cols=65 Identities=11% Similarity=0.223 Sum_probs=40.3
Q ss_pred ccccccHHHHHHHHHHHHHhhHHHHHHHHHhchhh-------hchHHHHHHHHHhchhhHHHhHHHHHHHHH
Q 046315 258 NRDLDTISRLVARLNDELEHMRSTVKFWLDRGEVR-------LQASGEVARQLLKNDASFSQQLDELEEHLY 322 (353)
Q Consensus 258 ~~DldTIs~LV~RL~~eIe~~~~~v~fal~~~~~~-------~~~vkevv~elkk~~~~f~~qleeLeehv~ 322 (353)
.++.......|..|..+++....-.+-..+..+.- .+.+++-+..|++....+.+|++|||..+-
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677777777777766665544331110 034556677777777888888888885443
Done!