Query 046315
Match_columns 353
No_of_seqs 98 out of 104
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 18:59:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046315.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046315hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u5pa1 a.7.1.1 (A:1662-1771) 33.2 45 0.0033 23.4 6.1 75 257-334 30-110 (110)
2 d1xd7a_ a.4.5.55 (A:) Hypothet 27.1 63 0.0046 23.9 6.2 32 251-285 54-85 (127)
3 d1lgha_ f.3.1.1 (A:) Light-har 22.1 50 0.0036 21.2 3.8 19 207-227 25-43 (56)
4 d1vcta1 a.7.12.1 (A:9-107) Hyp 21.6 1.2E+02 0.009 21.0 7.3 50 263-329 5-54 (99)
5 d1wa8b1 a.25.3.1 (B:602-695) E 19.2 1.4E+02 0.01 20.6 6.8 61 264-325 17-79 (94)
6 d2htna1 a.25.1.1 (A:1-158) Bac 15.6 1.8E+02 0.013 21.4 6.9 50 268-317 91-141 (158)
7 d1sumb_ a.7.12.1 (B:) PhoU hom 15.2 2.6E+02 0.019 22.0 8.9 35 296-330 26-60 (225)
8 d1sumb_ a.7.12.1 (B:) PhoU hom 14.6 2.2E+02 0.016 22.3 7.5 22 302-324 75-96 (225)
9 d1i2ta_ a.144.1.1 (A:) hyperpl 13.6 35 0.0025 23.1 1.5 23 60-82 22-44 (61)
10 d1jgca_ a.25.1.1 (A:) Bacterio 13.2 2.5E+02 0.018 20.9 7.0 47 265-311 88-135 (160)
No 1
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=33.18 E-value=45 Score=23.41 Aligned_cols=75 Identities=11% Similarity=0.180 Sum_probs=45.4
Q ss_pred hccccccHHHHHHH---HHHHHHhhHHHHHHHHHhchhhhchHH---HHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHH
Q 046315 257 LNRDLDTISRLVAR---LNDELEHMRSTVKFWLDRGEVRLQASG---EVARQLLKNDASFSQQLDELEEHLYLCFMTVNR 330 (353)
Q Consensus 257 l~~DldTIs~LV~R---L~~eIe~~~~~v~fal~~~~~~~~~vk---evv~elkk~~~~f~~qleeLeehv~lCf~~Inr 330 (353)
...|++++..+..+ +..+|+.....++.....|+. .+. ....+|+.....+.+.-++|.+-+...-..++.
T Consensus 30 ~g~d~~~~~~~~~~h~~~~~ei~~~~~~i~~l~~~~~~---L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~R~~~L~e 106 (110)
T d1u5pa1 30 YGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADS---LMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNE 106 (110)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888766 445556666666655555331 111 123456666777777777777777766666666
Q ss_pred HHHH
Q 046315 331 ARNL 334 (353)
Q Consensus 331 AR~l 334 (353)
|+.+
T Consensus 107 a~~L 110 (110)
T d1u5pa1 107 SHRL 110 (110)
T ss_dssp HHHH
T ss_pred HcCC
Confidence 6543
No 2
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=27.10 E-value=63 Score=23.87 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=17.0
Q ss_pred hccchhhccccccHHHHHHHHHHHHHhhHHHHHHH
Q 046315 251 AKGTYILNRDLDTISRLVARLNDELEHMRSTVKFW 285 (353)
Q Consensus 251 akGtyil~~DldTIs~LV~RL~~eIe~~~~~v~fa 285 (353)
..|-| +.+|.+.|+ +.-+...+|......+..
T Consensus 54 ~~GGy-Lar~p~~It--l~dI~~ave~~~~~~~c~ 85 (127)
T d1xd7a_ 54 VPGAS-LKKDPADIS--LLEVYRAVQKQEELFAVH 85 (127)
T ss_dssp SSSCE-ESSCGGGCB--HHHHHHHHCC--------
T ss_pred CCCcc-ccCCHHhCc--HHHHHHHHcCCcceeeec
Confidence 46668 999999987 345555566555555443
No 3
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=22.06 E-value=50 Score=21.24 Aligned_cols=19 Identities=42% Similarity=0.733 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 046315 207 ISLTVIVASHALALLVAAPGL 227 (353)
Q Consensus 207 ~av~i~IA~hala~l~a~P~~ 227 (353)
++-+++||+|+ +.+|+|+.
T Consensus 25 vatvvaiavha--avlaapgf 43 (56)
T d1lgha_ 25 VATVVAIAVHA--AVLAAPGF 43 (56)
T ss_dssp HHHHHHHHHHH--HHHHSGGG
T ss_pred HHHHHHHHHHH--HHHhcCCC
Confidence 34445577775 55677753
No 4
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.61 E-value=1.2e+02 Score=21.02 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHhchhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHH
Q 046315 263 TISRLVARLNDELEHMRSTVKFWLDRGEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCFMTVN 329 (353)
Q Consensus 263 TIs~LV~RL~~eIe~~~~~v~fal~~~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf~~In 329 (353)
+|+..+.+..+-+++|...+=-| +...+...-+++.+.|+.|+.-+..|.
T Consensus 5 ~i~~~l~~M~~~~~~ml~~a~~a-----------------~~~~D~~~A~~v~~~d~~ID~l~~~i~ 54 (99)
T d1vcta1 5 SVKEIFIEMKDTVELMVDLAYAS-----------------LLFGDKEIAEEVLELEERIDLLNYQLM 54 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-----------------HHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-----------------HHHCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445555555555555554444 444445555555666666665555553
No 5
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=19.15 E-value=1.4e+02 Score=20.61 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHh--chhhhchHHHHHHHHHhchhhHHHhHHHHHHHHHHHH
Q 046315 264 ISRLVARLNDELEHMRSTVKFWLDR--GEVRLQASGEVARQLLKNDASFSQQLDELEEHLYLCF 325 (353)
Q Consensus 264 Is~LV~RL~~eIe~~~~~v~fal~~--~~~~~~~vkevv~elkk~~~~f~~qleeLeehv~lCf 325 (353)
|+.-..+|+.+++.+...++--... |+.. ..-..+..+.......+.+.|.++.+++.-.-
T Consensus 17 i~~~~~~i~~~l~~L~~~~~~l~~~W~G~A~-~af~~~~~~W~~~~~~l~~~L~~i~~~l~~~~ 79 (94)
T d1wa8b1 17 IQGNVTSIHSLLDEGKQSLTKLAAAWGGSGS-EAYQGVQQKWDATATELNNALQNLARTISEAG 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGSCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544333222 4443 56778899999999999999999999886543
No 6
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=15.62 E-value=1.8e+02 Score=21.44 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHhchhh-hchHHHHHHHHHhchhhHHHhHHHH
Q 046315 268 VARLNDELEHMRSTVKFWLDRGEVR-LQASGEVARQLLKNDASFSQQLDEL 317 (353)
Q Consensus 268 V~RL~~eIe~~~~~v~fal~~~~~~-~~~vkevv~elkk~~~~f~~qleeL 317 (353)
...-+..++.....++.|.+.++.. ...+..++++-.++...|.+.|+.+
T Consensus 91 ~~~e~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eee~h~~~l~~~L~~~ 141 (158)
T d2htna1 91 LALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLI 141 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566777777887654321 1345556666666666666555554
No 7
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=15.17 E-value=2.6e+02 Score=21.95 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=20.8
Q ss_pred HHHHHHHHHhchhhHHHhHHHHHHHHHHHHHHHHH
Q 046315 296 SGEVARQLLKNDASFSQQLDELEEHLYLCFMTVNR 330 (353)
Q Consensus 296 vkevv~elkk~~~~f~~qleeLeehv~lCf~~Inr 330 (353)
+..+++-|...+....+++.+.|+.|+.+-..|.+
T Consensus 26 l~~a~~al~~~D~~~a~~V~~~d~~Id~l~~~I~~ 60 (225)
T d1sumb_ 26 FRNSISSLVERNESLAREVIADEEVVDQMEVEIQE 60 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44445555555556666666666666666666644
No 8
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=14.64 E-value=2.2e+02 Score=22.33 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=9.8
Q ss_pred HHHhchhhHHHhHHHHHHHHHHH
Q 046315 302 QLLKNDASFSQQLDELEEHLYLC 324 (353)
Q Consensus 302 elkk~~~~f~~qleeLeehv~lC 324 (353)
+++. ...+.+-..+||.=-+.|
T Consensus 75 dlR~-i~~~l~i~~dlERIgD~a 96 (225)
T d1sumb_ 75 PLLT-VTAGIRVAELIENIADKC 96 (225)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH
Confidence 4442 334445555555433333
No 9
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.65 E-value=35 Score=23.14 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.1
Q ss_pred HHHhhcccCCCHHHHHHHHhcCC
Q 046315 60 RLFAEQLLDPDQSTVIRILDLVK 82 (353)
Q Consensus 60 ~~~~~~LLep~qe~V~~il~~~~ 82 (353)
-.+|+-|||+++.-+-.+|++++
T Consensus 22 ~KITGMLLEm~~~ell~lL~~~~ 44 (61)
T d1i2ta_ 22 SKITGMLLELSPAQLLLLLASED 44 (61)
T ss_dssp HHHHHHHTTSCHHHHHHHHHCHH
T ss_pred cchhHHHhcCCHHHHHHHHCCHH
Confidence 47899999999998989988875
No 10
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=13.19 E-value=2.5e+02 Score=20.88 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhchhh-hchHHHHHHHHHhchhhHH
Q 046315 265 SRLVARLNDELEHMRSTVKFWLDRGEVR-LQASGEVARQLLKNDASFS 311 (353)
Q Consensus 265 s~LV~RL~~eIe~~~~~v~fal~~~~~~-~~~vkevv~elkk~~~~f~ 311 (353)
...++.-+..++..+..++.|-+.++.. ...++.++++-.++...|.
T Consensus 88 ~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~eee~h~~~l~ 135 (160)
T d1jgca_ 88 ECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLE 135 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566777788888887665421 1344555555555554443
Done!