BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046316
(966 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 45 AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIA 104
A+ K+FIK+ W + + LPA E+I+K ++ + + I A++SIA
Sbjct: 57 GALFFKNFIKRKWVDENGNHLLPA---NNVELIKKEIVPLMISLPNNLQVQIGEAISSIA 113
Query: 105 AYDWPEDWPDLL 116
D+P+ WP LL
Sbjct: 114 DSDFPDRWPTLL 125
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 45 AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIA 104
A+ K+FIK+ W + + LPA E+I+K ++ + + I A++SIA
Sbjct: 57 GALFFKNFIKRKWVDENGNHLLPA---NNVELIKKEIVPLMISLPNNLQVQIGEAISSIA 113
Query: 105 AYDWPEDWPDLL 116
D+P+ WP LL
Sbjct: 114 DSDFPDRWPTLL 125
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 45 AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIA 104
+ ++LK+ +K H+Q + I+ L+++ D+ I + + + +IA
Sbjct: 68 SGLILKNNVKAHFQNFPNGV---------TDFIKSECLNNIGDSSPLIRATVGILITTIA 118
Query: 105 AYDWPEDWPDLLPFLLKLIT--DQSNMNGVHGGLR 137
+ ++WPDLLP L L+ D + G G L+
Sbjct: 119 SKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQ 153
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 45 AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIA 104
+ ++LK+ +K H+Q + I+ L+++ D+ I + + + +IA
Sbjct: 68 SGLILKNNVKAHFQNFPNGV---------TDFIKSECLNNIGDSSPLIRATVGILITTIA 118
Query: 105 AYDWPEDWPDLLPFLLKLI--TDQSNMNGVHGGLR 137
+ ++WPDLLP L L+ D + G G L+
Sbjct: 119 SKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQ 153
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 45 AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIA 104
+ ++LK+ +K H+Q + I+ L+++ D+ I + + + +IA
Sbjct: 68 SGLILKNNVKAHFQNFPNGV---------TDFIKSECLNNIGDSSPLIRATVGILITTIA 118
Query: 105 AYDWPEDWPDLLPFLLKLI--TDQSNMNGVHGGLR 137
+ ++WPDLLP L L+ D + G G L+
Sbjct: 119 SKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQ 153
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 45 AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIA 104
+ ++LK+ +K H+Q + I+ L+++ D+ I + + + +IA
Sbjct: 68 SGLILKNNVKAHFQNFPNGV---------TDFIKSECLNNIGDSSPLIRATVGILITTIA 118
Query: 105 AYDWPEDWPDLLPFLLKLIT--DQSNMNGVHGGLR 137
+ ++WPDLLP L L+ D + G G L+
Sbjct: 119 SKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQ 153
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
Length = 1204
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 48 LLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYD 107
+L+H +K W G E + + E+I L+ L++ + I A+S V + +
Sbjct: 70 ILEHVVKFRWN-GMSRLEKVYLKNSVMELIANGTLNILEEENH-IKDALSRIVVEMIKRE 127
Query: 108 WPEDWPDLL 116
WP+ WPD+L
Sbjct: 128 WPQHWPDML 136
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 679 ATECLATFIS-GGRQLMLVWGGDSGFTMRSLLDAASR 714
A EC A FIS G +L+ +W G+S +R + D A +
Sbjct: 70 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 106
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 679 ATECLATFIS-GGRQLMLVWGGDSGFTMRSLLDAASR 714
A EC A FIS G +L+ +W G+S +R + D A +
Sbjct: 532 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 679 ATECLATFIS-GGRQLMLVWGGDSGFTMRSLLDAASR 714
A EC A FIS G +L+ +W G+S +R + D A +
Sbjct: 532 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 110 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 142
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLL 120
T + + + + I +WP++WP+ +P L+
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELI 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,908,051
Number of Sequences: 62578
Number of extensions: 912171
Number of successful extensions: 2487
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2470
Number of HSP's gapped (non-prelim): 31
length of query: 966
length of database: 14,973,337
effective HSP length: 108
effective length of query: 858
effective length of database: 8,214,913
effective search space: 7048395354
effective search space used: 7048395354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)