Query 046316
Match_columns 966
No_of_seqs 300 out of 1508
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 10:50:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2274 Predicted importin 9 [ 100.0 7E-143 1E-147 1195.6 77.2 923 10-965 1-967 (1005)
2 KOG1991 Nuclear transport rece 100.0 3.9E-99 8E-104 855.6 69.2 812 10-896 1-886 (1010)
3 COG5656 SXM1 Importin, protein 100.0 3.6E-72 7.8E-77 613.1 64.6 775 12-838 2-851 (970)
4 KOG1992 Nuclear export recepto 100.0 1.9E-65 4.1E-70 567.8 59.8 775 10-842 2-851 (960)
5 KOG1993 Nuclear transport rece 100.0 2.8E-64 6.1E-69 555.5 55.5 779 15-843 2-871 (978)
6 KOG2023 Nuclear transport rece 100.0 5.1E-56 1.1E-60 481.2 49.2 729 11-843 11-824 (885)
7 COG5657 CSE1 CAS/CSE protein i 100.0 4.1E-53 9E-58 477.0 45.7 777 14-842 5-840 (947)
8 KOG2171 Karyopherin (importin) 100.0 1.9E-43 4E-48 410.7 58.8 578 10-667 1-615 (1075)
9 KOG1241 Karyopherin (importin) 100.0 9.7E-38 2.1E-42 345.6 48.3 655 14-761 2-731 (859)
10 PF08506 Cse1: Cse1; InterPro 100.0 2.7E-35 5.8E-40 323.7 26.2 297 178-513 58-370 (370)
11 COG5215 KAP95 Karyopherin (imp 100.0 4.5E-31 9.8E-36 282.7 46.9 646 18-780 8-712 (858)
12 PF03378 CAS_CSE1: CAS/CSE pro 99.9 2.6E-22 5.6E-27 225.5 23.3 302 522-843 17-331 (435)
13 KOG2171 Karyopherin (importin) 99.8 7.5E-15 1.6E-19 173.0 55.4 673 45-843 104-1008(1075)
14 COG5101 CRM1 Importin beta-rel 99.7 1.7E-11 3.7E-16 134.5 54.7 520 8-563 9-651 (1053)
15 KOG2022 Nuclear transport rece 99.6 5.5E-09 1.2E-13 120.2 60.8 493 11-561 5-620 (982)
16 KOG2021 Nuclear mRNA export fa 99.5 3.1E-09 6.7E-14 119.7 49.4 484 15-541 5-586 (980)
17 KOG1241 Karyopherin (importin) 99.5 4.4E-09 9.6E-14 119.1 47.9 617 9-714 30-730 (859)
18 KOG1824 TATA-binding protein-i 99.3 7.8E-07 1.7E-11 103.2 52.1 534 81-652 179-772 (1233)
19 KOG2023 Nuclear transport rece 99.2 3.4E-08 7.3E-13 110.2 33.4 624 79-790 131-825 (885)
20 KOG2081 Nuclear transport regu 99.2 7.2E-08 1.6E-12 106.9 32.9 448 45-561 37-537 (559)
21 KOG1824 TATA-binding protein-i 99.1 5.8E-06 1.3E-10 96.2 46.9 608 17-694 9-728 (1233)
22 COG5215 KAP95 Karyopherin (imp 99.1 4.5E-05 9.7E-10 84.4 53.3 324 364-714 378-730 (858)
23 KOG2274 Predicted importin 9 [ 99.0 1.2E-05 2.5E-10 93.7 42.7 158 28-192 53-229 (1005)
24 KOG2020 Nuclear transport rece 98.5 0.00057 1.2E-08 84.1 38.9 123 12-145 9-163 (1041)
25 PF08389 Xpo1: Exportin 1-like 98.5 5.5E-07 1.2E-11 87.7 10.8 99 89-189 1-115 (148)
26 PLN03200 cellulose synthase-in 98.5 0.0066 1.4E-07 79.7 47.8 581 81-761 149-792 (2102)
27 PF01602 Adaptin_N: Adaptin N 98.5 0.0014 3E-08 78.5 40.2 492 13-600 7-522 (526)
28 PF01602 Adaptin_N: Adaptin N 98.4 0.00051 1.1E-08 82.2 35.1 438 15-555 44-519 (526)
29 KOG1248 Uncharacterized conser 98.4 0.016 3.4E-07 70.7 54.2 288 461-763 627-925 (1176)
30 KOG0915 Uncharacterized conser 98.3 0.00012 2.6E-09 89.8 25.1 325 412-774 969-1320(1702)
31 PLN03200 cellulose synthase-in 98.3 0.048 1.1E-06 72.0 54.5 605 12-691 12-683 (2102)
32 PF03810 IBN_N: Importin-beta 98.3 4.8E-07 1E-11 77.1 2.6 53 33-86 1-76 (77)
33 PTZ00429 beta-adaptin; Provisi 98.1 0.024 5.2E-07 68.8 38.8 68 76-145 140-209 (746)
34 KOG1059 Vesicle coat complex A 98.0 0.056 1.2E-06 62.5 40.1 299 90-545 85-385 (877)
35 PF10508 Proteasom_PSMB: Prote 97.8 0.0084 1.8E-07 70.6 27.7 227 451-688 81-319 (503)
36 PF10508 Proteasom_PSMB: Prote 97.7 0.015 3.2E-07 68.5 27.4 238 445-694 36-284 (503)
37 KOG1242 Protein containing ada 97.7 0.035 7.6E-07 63.6 28.6 395 75-546 133-550 (569)
38 PF05918 API5: Apoptosis inhib 97.6 0.0044 9.6E-08 71.5 20.1 299 462-793 34-355 (556)
39 KOG1248 Uncharacterized conser 97.6 0.061 1.3E-06 65.9 29.3 186 366-562 711-903 (1176)
40 KOG0212 Uncharacterized conser 97.6 0.027 5.8E-07 63.3 24.4 203 484-695 80-286 (675)
41 KOG1242 Protein containing ada 97.5 0.32 6.9E-06 56.0 39.8 308 366-716 230-544 (569)
42 KOG0211 Protein phosphatase 2A 97.5 0.25 5.4E-06 59.8 33.5 441 27-519 173-665 (759)
43 KOG1993 Nuclear transport rece 97.5 0.19 4.2E-06 58.9 30.7 146 89-252 500-648 (978)
44 PTZ00429 beta-adaptin; Provisi 97.5 0.55 1.2E-05 57.4 38.4 387 368-838 156-547 (746)
45 KOG0166 Karyopherin (importin) 97.3 0.0023 5E-08 72.5 13.5 263 414-691 166-439 (514)
46 KOG0213 Splicing factor 3b, su 97.3 0.54 1.2E-05 54.8 52.8 232 448-694 718-961 (1172)
47 KOG1410 Nuclear transport rece 97.3 0.52 1.1E-05 54.3 34.5 125 12-147 4-160 (1082)
48 KOG0166 Karyopherin (importin) 97.3 0.013 2.9E-07 66.5 18.3 350 461-839 77-439 (514)
49 KOG0212 Uncharacterized conser 97.1 0.2 4.4E-06 56.6 25.3 363 363-758 11-386 (675)
50 KOG1992 Nuclear export recepto 97.1 1.1 2.3E-05 53.3 48.9 563 81-720 42-690 (960)
51 PF12719 Cnd3: Nuclear condens 97.0 0.032 6.8E-07 61.1 17.7 177 442-626 22-210 (298)
52 KOG1991 Nuclear transport rece 96.9 1.6 3.6E-05 53.0 54.3 239 461-716 429-691 (1010)
53 PF12460 MMS19_C: RNAPII trans 96.9 1.2 2.7E-05 51.2 31.5 195 367-579 205-414 (415)
54 KOG1059 Vesicle coat complex A 96.9 1.4 3.1E-05 51.5 29.5 284 448-774 110-396 (877)
55 KOG1062 Vesicle coat complex A 96.8 1.9 4.1E-05 51.2 30.8 119 45-168 104-234 (866)
56 KOG1060 Vesicle coat complex A 96.7 2 4.3E-05 50.9 28.9 253 486-787 285-538 (968)
57 KOG1943 Beta-tubulin folding c 96.6 2.9 6.4E-05 51.3 50.1 112 72-189 337-457 (1133)
58 KOG0915 Uncharacterized conser 96.6 3.7 8E-05 52.3 46.7 507 12-625 816-1368(1702)
59 PRK09687 putative lyase; Provi 96.4 0.28 6.1E-06 52.9 19.1 151 413-600 36-186 (280)
60 PF08167 RIX1: rRNA processing 96.3 0.079 1.7E-06 52.3 13.7 136 111-262 22-157 (165)
61 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.012 2.5E-07 52.1 6.3 81 467-549 3-86 (97)
62 KOG0213 Splicing factor 3b, su 96.2 3.8 8.3E-05 48.2 44.0 492 83-689 560-1066(1172)
63 PRK13800 putative oxidoreducta 96.1 0.55 1.2E-05 59.7 22.6 273 79-515 624-896 (897)
64 PF12348 CLASP_N: CLASP N term 95.9 0.24 5.2E-06 51.8 15.5 186 361-561 16-207 (228)
65 KOG0946 ER-Golgi vesicle-tethe 95.8 1.3 2.7E-05 52.5 21.5 196 505-713 39-264 (970)
66 PF12460 MMS19_C: RNAPII trans 95.6 6 0.00013 45.6 33.6 223 467-711 164-410 (415)
67 COG5181 HSH155 U2 snRNP splice 95.5 6.3 0.00014 45.5 42.5 200 481-694 557-766 (975)
68 PF04510 DUF577: Family of unk 95.5 0.56 1.2E-05 45.4 14.7 152 77-247 4-163 (174)
69 PRK09687 putative lyase; Provi 95.4 0.19 4.2E-06 54.2 12.8 175 365-598 104-278 (280)
70 PF13513 HEAT_EZ: HEAT-like re 95.4 0.014 3E-07 45.7 3.0 52 464-516 1-55 (55)
71 KOG1240 Protein kinase contain 95.4 1 2.2E-05 55.7 19.3 74 302-399 670-744 (1431)
72 COG5240 SEC21 Vesicle coat com 95.3 7 0.00015 44.8 25.8 230 233-517 317-554 (898)
73 PF12348 CLASP_N: CLASP N term 94.9 0.47 1E-05 49.7 13.8 194 411-618 18-223 (228)
74 COG5096 Vesicle coat complex, 94.8 9 0.00019 46.5 25.2 128 413-560 105-237 (757)
75 KOG1062 Vesicle coat complex A 94.8 8.6 0.00019 46.0 24.1 107 443-561 103-209 (866)
76 PF05004 IFRD: Interferon-rela 94.5 2 4.3E-05 47.1 17.8 199 490-691 45-260 (309)
77 KOG1061 Vesicle coat complex A 94.5 2.2 4.7E-05 50.7 18.6 135 413-563 99-234 (734)
78 PF12755 Vac14_Fab1_bd: Vacuol 94.3 0.2 4.3E-06 44.4 7.6 84 417-510 3-89 (97)
79 KOG1240 Protein kinase contain 93.9 9.4 0.0002 47.7 22.7 130 368-519 594-726 (1431)
80 PF08167 RIX1: rRNA processing 93.9 0.35 7.6E-06 47.7 9.5 114 444-563 23-146 (165)
81 PF13513 HEAT_EZ: HEAT-like re 93.8 0.12 2.6E-06 40.4 4.8 55 414-477 1-55 (55)
82 PF05804 KAP: Kinesin-associat 93.8 10 0.00022 46.2 23.0 328 417-780 266-608 (708)
83 KOG1058 Vesicle coat complex C 93.7 9.1 0.0002 45.4 21.2 171 352-558 109-307 (948)
84 PF01603 B56: Protein phosphat 93.7 2.9 6.3E-05 47.9 17.7 223 10-257 130-379 (409)
85 PF14500 MMS19_N: Dos2-interac 93.6 11 0.00023 40.2 20.7 215 461-688 10-237 (262)
86 PRK13800 putative oxidoreducta 93.4 2.5 5.5E-05 53.8 18.3 171 461-684 725-895 (897)
87 PF12717 Cnd1: non-SMC mitotic 93.4 0.76 1.7E-05 46.0 11.0 132 415-560 3-139 (178)
88 cd00020 ARM Armadillo/beta-cat 93.1 0.54 1.2E-05 43.0 9.0 105 78-187 9-118 (120)
89 PF13646 HEAT_2: HEAT repeats; 93.0 0.46 1E-05 41.0 7.8 77 412-514 12-88 (88)
90 PF05004 IFRD: Interferon-rela 92.7 15 0.00033 40.2 20.8 160 369-543 103-285 (309)
91 PF05918 API5: Apoptosis inhib 92.3 29 0.00062 40.9 26.2 116 15-144 8-125 (556)
92 KOG2160 Armadillo/beta-catenin 92.3 1.8 3.9E-05 47.0 12.3 139 413-562 96-242 (342)
93 PF04826 Arm_2: Armadillo-like 92.1 1.4 3.1E-05 46.6 11.3 179 461-647 24-207 (254)
94 COG5064 SRP1 Karyopherin (impo 91.8 0.88 1.9E-05 48.4 9.0 264 415-692 172-447 (526)
95 KOG2956 CLIP-associating prote 91.7 5.5 0.00012 44.7 15.3 193 489-694 287-484 (516)
96 cd00020 ARM Armadillo/beta-cat 91.7 0.26 5.6E-06 45.3 4.8 96 461-557 18-117 (120)
97 KOG2032 Uncharacterized conser 91.6 1.7 3.7E-05 48.8 11.5 133 448-580 256-397 (533)
98 PF08767 CRM1_C: CRM1 C termin 91.0 7 0.00015 43.1 15.8 126 604-736 108-243 (319)
99 KOG0946 ER-Golgi vesicle-tethe 91.0 43 0.00093 40.3 33.8 244 365-619 135-417 (970)
100 PF05536 Neurochondrin: Neuroc 90.8 9.8 0.00021 45.2 17.8 181 588-777 72-259 (543)
101 KOG4224 Armadillo repeat prote 90.8 3.3 7.2E-05 44.6 12.1 155 461-622 219-385 (550)
102 KOG1967 DNA repair/transcripti 90.6 0.82 1.8E-05 54.9 8.4 135 489-625 868-1007(1030)
103 PF10274 ParcG: Parkin co-regu 90.2 1.8 3.8E-05 42.9 9.1 116 486-603 36-165 (183)
104 PF12717 Cnd1: non-SMC mitotic 90.1 2.2 4.7E-05 42.7 10.1 86 79-169 28-113 (178)
105 PF03378 CAS_CSE1: CAS/CSE pro 90.1 41 0.00089 38.8 27.4 308 111-498 23-349 (435)
106 PF04826 Arm_2: Armadillo-like 90.0 4.2 9E-05 43.1 12.4 202 488-697 12-217 (254)
107 KOG0414 Chromosome condensatio 89.7 67 0.0015 40.6 39.9 159 367-542 290-454 (1251)
108 COG5181 HSH155 U2 snRNP splice 89.7 47 0.001 38.8 40.0 77 88-168 293-369 (975)
109 PF10521 DUF2454: Protein of u 89.7 4.7 0.0001 43.6 12.9 162 94-267 98-272 (282)
110 KOG1020 Sister chromatid cohes 89.6 78 0.0017 41.2 47.9 136 80-246 820-958 (1692)
111 KOG2549 Transcription initiati 89.5 9.4 0.0002 43.8 15.1 106 303-429 262-370 (576)
112 PF02985 HEAT: HEAT repeat; I 89.5 0.7 1.5E-05 31.2 4.0 28 79-106 3-30 (31)
113 COG5096 Vesicle coat complex, 89.4 49 0.0011 40.4 21.9 101 450-560 95-195 (757)
114 PF08569 Mo25: Mo25-like; Int 88.5 45 0.00097 37.0 21.3 163 73-258 69-250 (335)
115 KOG1058 Vesicle coat complex C 88.4 45 0.00098 39.9 19.8 78 450-536 102-179 (948)
116 PF13646 HEAT_2: HEAT repeats; 88.1 2.7 5.8E-05 36.1 8.0 82 80-182 3-85 (88)
117 PF11864 DUF3384: Domain of un 88.0 36 0.00077 39.8 19.5 252 503-780 4-286 (464)
118 KOG0168 Putative ubiquitin fus 87.1 82 0.0018 38.5 24.4 92 743-837 549-653 (1051)
119 PF10363 DUF2435: Protein of u 86.9 3.9 8.4E-05 35.8 8.1 85 488-581 3-87 (92)
120 KOG2956 CLIP-associating prote 86.6 40 0.00088 38.1 17.3 94 81-182 376-470 (516)
121 KOG1078 Vesicle coat complex C 86.5 85 0.0018 38.0 25.9 227 233-518 296-532 (865)
122 PF10521 DUF2454: Protein of u 85.6 10 0.00023 41.0 12.6 155 471-626 101-278 (282)
123 PF14911 MMS22L_C: S-phase gen 85.1 29 0.00062 38.8 15.5 61 631-691 226-290 (373)
124 KOG1967 DNA repair/transcripti 84.9 19 0.00042 43.9 14.8 179 505-686 829-1022(1030)
125 COG5095 TAF6 Transcription ini 84.5 14 0.0003 39.0 11.9 116 540-668 207-334 (450)
126 PF14500 MMS19_N: Dos2-interac 84.5 61 0.0013 34.6 19.8 167 119-339 4-171 (262)
127 PF04118 Dopey_N: Dopey, N-ter 84.3 32 0.0007 37.5 15.4 139 89-262 2-140 (307)
128 KOG4653 Uncharacterized conser 84.1 27 0.00058 42.4 15.4 189 488-689 727-919 (982)
129 KOG2213 Apoptosis inhibitor 5/ 83.1 82 0.0018 35.0 18.6 52 466-519 40-91 (460)
130 COG5101 CRM1 Importin beta-rel 83.0 1E+02 0.0023 36.2 23.4 108 467-579 500-620 (1053)
131 PLN03076 ARF guanine nucleotid 82.7 2E+02 0.0044 39.3 40.3 278 88-401 1195-1513(1780)
132 PF01603 B56: Protein phosphat 81.9 34 0.00074 39.2 15.3 133 552-694 239-376 (409)
133 PF08064 UME: UME (NUC010) dom 81.6 2.9 6.3E-05 37.8 5.2 80 461-541 26-106 (107)
134 PF08767 CRM1_C: CRM1 C termin 81.1 51 0.0011 36.4 15.8 95 589-689 144-245 (319)
135 PF13251 DUF4042: Domain of un 81.0 12 0.00025 37.5 9.6 110 493-604 44-176 (182)
136 COG5064 SRP1 Karyopherin (impo 80.6 30 0.00065 37.3 12.7 113 573-691 159-274 (526)
137 PF13251 DUF4042: Domain of un 80.1 13 0.00027 37.2 9.5 142 91-250 1-176 (182)
138 PF03224 V-ATPase_H_N: V-ATPas 79.4 10 0.00022 41.8 9.7 175 490-668 107-292 (312)
139 KOG2022 Nuclear transport rece 78.7 1.7E+02 0.0038 36.0 43.0 341 370-760 527-921 (982)
140 PF04931 DNA_pol_phi: DNA poly 78.2 1.7E+02 0.0037 36.8 21.0 25 830-854 593-619 (784)
141 COG5657 CSE1 CAS/CSE protein i 75.6 74 0.0016 39.1 15.5 134 485-626 530-672 (947)
142 PF02985 HEAT: HEAT repeat; I 75.5 5.7 0.00012 26.7 4.0 30 115-145 1-30 (31)
143 smart00802 UME Domain in UVSB 75.3 62 0.0014 29.2 11.7 104 203-340 2-105 (107)
144 PF10441 Urb2: Urb2/Npa2 famil 75.0 36 0.00079 35.3 11.9 30 743-772 149-179 (223)
145 PF11841 DUF3361: Domain of un 75.0 41 0.00088 32.7 11.0 116 534-654 14-140 (160)
146 PF05804 KAP: Kinesin-associat 74.9 2.2E+02 0.0047 35.1 38.5 331 302-689 263-608 (708)
147 KOG2137 Protein kinase [Signal 74.7 29 0.00062 41.5 11.8 112 71-189 384-496 (700)
148 PF12719 Cnd3: Nuclear condens 73.3 1E+02 0.0022 33.7 15.4 107 75-186 26-140 (298)
149 PF04388 Hamartin: Hamartin pr 73.3 1.6E+02 0.0035 36.1 18.3 79 631-716 83-161 (668)
150 KOG4653 Uncharacterized conser 72.8 2.1E+02 0.0046 35.2 18.1 181 461-653 738-926 (982)
151 PF14225 MOR2-PAG1_C: Cell mor 72.5 80 0.0017 33.7 13.7 134 15-189 113-254 (262)
152 PLN03205 ATR interacting prote 71.6 1.5E+02 0.0033 32.8 15.3 248 108-387 365-643 (652)
153 PF08064 UME: UME (NUC010) dom 71.2 80 0.0017 28.5 11.6 104 203-340 2-105 (107)
154 PF03224 V-ATPase_H_N: V-ATPas 70.4 1E+02 0.0023 33.8 14.8 146 631-780 120-270 (312)
155 PF07571 DUF1546: Protein of u 69.5 22 0.00048 31.1 7.3 62 363-429 17-78 (92)
156 PF08506 Cse1: Cse1; InterPro 68.8 2.1E+02 0.0045 32.3 19.4 119 415-543 226-358 (370)
157 KOG2025 Chromosome condensatio 68.5 48 0.001 39.5 11.5 66 450-519 88-156 (892)
158 smart00802 UME Domain in UVSB 67.8 11 0.00024 34.0 5.1 76 463-539 28-104 (107)
159 PLN03076 ARF guanine nucleotid 67.7 4.6E+02 0.0099 36.1 21.7 102 89-190 1237-1377(1780)
160 KOG2160 Armadillo/beta-catenin 67.6 1.4E+02 0.003 32.9 14.2 106 583-691 93-199 (342)
161 KOG1837 Uncharacterized conser 67.6 24 0.00052 45.6 9.6 91 90-186 1518-1608(1621)
162 PF11865 DUF3385: Domain of un 67.5 44 0.00095 32.7 9.8 70 490-560 88-157 (160)
163 KOG0168 Putative ubiquitin fus 67.3 82 0.0018 38.5 13.2 148 486-647 209-366 (1051)
164 COG5656 SXM1 Importin, protein 66.9 3E+02 0.0065 33.5 30.4 126 24-167 424-552 (970)
165 KOG2549 Transcription initiati 66.7 1.3E+02 0.0029 34.9 14.3 117 115-253 208-332 (576)
166 KOG2137 Protein kinase [Signal 66.0 63 0.0014 38.7 12.0 76 608-689 384-459 (700)
167 KOG0392 SNF2 family DNA-depend 65.5 2E+02 0.0043 37.1 16.3 193 464-668 143-350 (1549)
168 COG5095 TAF6 Transcription ini 65.1 63 0.0014 34.3 10.5 51 203-253 268-321 (450)
169 KOG1077 Vesicle coat complex A 64.4 3.2E+02 0.007 33.0 32.1 59 85-146 120-179 (938)
170 cd08050 TAF6 TATA Binding Prot 64.3 69 0.0015 35.8 11.7 150 485-642 175-337 (343)
171 PF14664 RICTOR_N: Rapamycin-i 64.2 2.4E+02 0.0052 31.8 16.1 131 641-789 8-144 (371)
172 KOG2759 Vacuolar H+-ATPase V1 62.9 2.7E+02 0.0058 31.5 20.6 119 370-519 65-187 (442)
173 KOG1060 Vesicle coat complex A 62.5 3.7E+02 0.008 33.0 25.0 126 413-560 121-246 (968)
174 KOG1061 Vesicle coat complex A 62.5 3.6E+02 0.0078 32.9 27.0 69 76-146 121-191 (734)
175 PF10274 ParcG: Parkin co-regu 61.9 1.8E+02 0.0038 29.1 13.8 101 112-224 36-136 (183)
176 KOG1943 Beta-tubulin folding c 61.8 4.3E+02 0.0094 33.6 44.2 124 13-145 469-612 (1133)
177 PF04388 Hamartin: Hamartin pr 61.8 1.9E+02 0.004 35.6 15.7 129 114-259 70-203 (668)
178 KOG4413 26S proteasome regulat 61.6 2.4E+02 0.0052 30.6 17.0 87 471-558 64-155 (524)
179 COG5116 RPN2 26S proteasome re 61.4 28 0.00061 40.1 7.8 124 415-559 567-690 (926)
180 PF11698 V-ATPase_H_C: V-ATPas 60.9 17 0.00037 33.4 5.0 83 54-144 27-115 (119)
181 PF08389 Xpo1: Exportin 1-like 58.3 14 0.00029 35.3 4.4 128 464-597 2-148 (148)
182 PF04869 Uso1_p115_head: Uso1 57.9 1.4E+02 0.003 32.8 12.4 147 672-835 51-225 (312)
183 cd08050 TAF6 TATA Binding Prot 57.8 1.3E+02 0.0029 33.4 12.6 108 534-649 181-301 (343)
184 KOG4224 Armadillo repeat prote 57.5 3E+02 0.0065 30.4 16.2 191 491-688 211-405 (550)
185 KOG2032 Uncharacterized conser 57.2 78 0.0017 36.2 10.3 99 86-188 268-370 (533)
186 KOG0211 Protein phosphatase 2A 56.8 4.8E+02 0.01 32.5 35.3 348 347-741 271-629 (759)
187 PF00514 Arm: Armadillo/beta-c 56.8 25 0.00055 25.2 4.5 25 81-105 17-41 (41)
188 KOG4413 26S proteasome regulat 56.5 2.9E+02 0.0064 30.0 17.2 140 454-601 85-242 (524)
189 cd03561 VHS VHS domain family; 55.8 1.1E+02 0.0024 28.8 10.0 97 87-189 15-112 (133)
190 KOG0889 Histone acetyltransfer 55.7 2E+02 0.0043 41.3 15.2 119 133-272 22-150 (3550)
191 PF04118 Dopey_N: Dopey, N-ter 55.6 1.4E+02 0.003 32.7 11.8 129 114-270 54-183 (307)
192 KOG2081 Nuclear transport regu 55.2 1.6E+02 0.0035 34.3 12.6 107 589-717 368-478 (559)
193 PF14961 BROMI: Broad-minded p 54.9 6E+02 0.013 33.0 26.6 136 79-223 164-316 (1296)
194 smart00638 LPD_N Lipoprotein N 54.9 1.9E+02 0.0042 34.8 14.5 124 366-514 411-541 (574)
195 PF12530 DUF3730: Protein of u 54.8 1.3E+02 0.0027 31.6 11.2 123 14-144 20-151 (234)
196 cd00256 VATPase_H VATPase_H, r 54.5 3.9E+02 0.0084 30.8 16.6 80 631-713 116-195 (429)
197 PF05327 RRN3: RNA polymerase 53.8 4.7E+02 0.01 31.5 21.4 67 444-520 312-379 (563)
198 KOG0392 SNF2 family DNA-depend 52.5 1.2E+02 0.0025 39.0 11.5 101 460-561 826-926 (1549)
199 PF11865 DUF3385: Domain of un 51.7 1.6E+02 0.0034 28.8 10.5 47 728-775 107-153 (160)
200 KOG1949 Uncharacterized conser 51.3 2.1E+02 0.0046 34.3 12.7 156 160-383 177-333 (1005)
201 PF05536 Neurochondrin: Neuroc 51.3 5E+02 0.011 31.1 25.3 176 509-691 77-264 (543)
202 KOG1832 HIV-1 Vpr-binding prot 51.0 12 0.00025 45.2 2.8 12 872-883 1354-1365(1516)
203 KOG0929 Guanine nucleotide exc 50.5 7.7E+02 0.017 33.0 19.0 225 88-343 1049-1281(1514)
204 PF10363 DUF2435: Protein of u 49.6 51 0.0011 28.9 6.0 79 81-168 8-88 (92)
205 KOG0414 Chromosome condensatio 47.8 6.7E+02 0.015 32.4 16.9 146 461-625 934-1083(1251)
206 PF01465 GRIP: GRIP domain; I 47.6 38 0.00082 25.3 4.2 36 72-107 3-38 (46)
207 PF12830 Nipped-B_C: Sister ch 46.7 2.3E+02 0.005 28.4 11.2 66 80-147 12-77 (187)
208 PF09324 DUF1981: Domain of un 46.4 61 0.0013 27.9 6.0 55 86-141 28-85 (86)
209 KOG2611 Neurochondrin/leucine- 44.8 5.4E+02 0.012 29.6 16.5 188 568-762 102-308 (698)
210 PF14225 MOR2-PAG1_C: Cell mor 44.5 3.6E+02 0.0079 28.7 12.7 130 91-253 130-259 (262)
211 cd00197 VHS_ENTH_ANTH VHS, ENT 44.3 1.8E+02 0.0039 26.4 9.2 56 88-149 16-71 (115)
212 PF04078 Rcd1: Cell differenti 43.8 2.8E+02 0.0061 29.3 11.3 67 303-388 65-132 (262)
213 PF03542 Tuberin: Tuberin; In 41.7 5.5E+02 0.012 28.8 16.3 78 235-342 251-330 (356)
214 PF05764 YL1: YL1 nuclear prot 41.1 36 0.00078 35.8 4.5 15 876-890 10-24 (240)
215 smart00755 Grip golgin-97, Ran 40.3 49 0.0011 24.8 3.7 34 73-107 3-36 (46)
216 PF06025 DUF913: Domain of Unk 37.7 1.4E+02 0.0031 33.7 8.8 123 613-741 106-236 (379)
217 KOG2062 26S proteasome regulat 37.6 1.4E+02 0.003 36.0 8.7 87 460-551 599-685 (929)
218 cd00256 VATPase_H VATPase_H, r 37.4 7E+02 0.015 28.8 20.9 165 502-668 114-286 (429)
219 PF12333 Ipi1_N: Rix1 complex 37.1 1.5E+02 0.0032 26.5 7.1 63 605-670 3-65 (102)
220 PF11701 UNC45-central: Myosin 36.6 30 0.00065 33.7 2.9 128 494-625 9-140 (157)
221 KOG2933 Uncharacterized conser 35.6 6.2E+02 0.013 27.6 13.7 132 368-519 104-235 (334)
222 KOG4199 Uncharacterized conser 35.5 1.9E+02 0.004 31.7 8.5 80 533-612 285-370 (461)
223 PF01347 Vitellogenin_N: Lipop 34.6 2.4E+02 0.0051 34.4 11.0 175 307-513 395-584 (618)
224 KOG1517 Guanine nucleotide bin 34.1 7.4E+02 0.016 31.7 14.0 96 90-189 571-671 (1387)
225 KOG1832 HIV-1 Vpr-binding prot 34.0 26 0.00057 42.4 2.3 7 932-938 1469-1475(1516)
226 PF09026 CENP-B_dimeris: Centr 33.9 19 0.00041 31.1 0.9 8 931-938 43-50 (101)
227 cd07920 Pumilio Pumilio-family 33.8 4.8E+02 0.01 28.5 12.4 31 642-672 207-237 (322)
228 smart00582 RPR domain present 33.5 2.6E+02 0.0057 25.5 8.6 61 80-147 4-64 (121)
229 PF12783 Sec7_N: Guanine nucle 33.4 2.4E+02 0.0053 27.5 8.9 110 675-790 38-153 (168)
230 PLN03205 ATR interacting prote 33.2 2.6E+02 0.0057 31.1 9.3 119 112-247 321-445 (652)
231 COG5218 YCG1 Chromosome conden 32.1 9.3E+02 0.02 28.6 14.0 71 74-145 89-162 (885)
232 PF04499 SAPS: SIT4 phosphatas 32.0 2.2E+02 0.0048 33.3 9.4 84 658-742 62-153 (475)
233 PF11702 DUF3295: Protein of u 32.0 21 0.00044 41.0 1.0 17 898-914 307-323 (507)
234 cd08812 CARD_RIG-I_like Caspas 31.7 1.5E+02 0.0033 25.6 6.2 48 341-397 31-78 (88)
235 PF07571 DUF1546: Protein of u 31.4 1.3E+02 0.0029 26.2 5.8 57 88-145 18-79 (92)
236 KOG1517 Guanine nucleotide bin 30.9 2.6E+02 0.0056 35.3 9.7 97 415-519 572-672 (1387)
237 PF13001 Ecm29: Proteasome sta 29.6 1.1E+02 0.0024 36.2 6.5 135 461-601 294-442 (501)
238 KOG1048 Neural adherens juncti 28.9 1.1E+02 0.0023 37.2 6.2 221 490-749 235-460 (717)
239 PF12726 SEN1_N: SEN1 N termin 28.6 1.2E+03 0.027 28.9 36.7 88 77-165 78-174 (727)
240 KOG2933 Uncharacterized conser 28.0 3.9E+02 0.0084 29.0 9.4 99 412-520 100-201 (334)
241 KOG2011 Sister chromatid cohes 27.8 1.4E+03 0.031 29.4 24.5 80 461-540 298-378 (1048)
242 KOG4535 HEAT and armadillo rep 27.5 8.3E+02 0.018 28.2 12.1 98 413-515 497-600 (728)
243 PF00514 Arm: Armadillo/beta-c 27.4 97 0.0021 22.1 3.6 28 659-687 13-40 (41)
244 PF13925 Katanin_con80: con80 26.8 1.3E+02 0.0027 29.6 5.4 52 95-147 45-101 (164)
245 KOG1820 Microtubule-associated 26.7 8.7E+02 0.019 30.5 13.5 179 502-692 266-447 (815)
246 KOG4541 Nuclear transport rece 26.7 1.1E+03 0.024 27.8 19.5 139 630-780 571-716 (748)
247 KOG1949 Uncharacterized conser 26.7 3.3E+02 0.0071 32.9 9.2 85 461-548 231-319 (1005)
248 PF06685 DUF1186: Protein of u 26.0 2.8E+02 0.0061 29.3 8.0 118 612-748 72-191 (249)
249 KOG1077 Vesicle coat complex A 25.7 1.3E+03 0.028 28.2 26.4 125 529-655 327-465 (938)
250 COG5098 Chromosome condensatio 25.6 1.3E+03 0.028 28.2 28.9 56 461-517 357-414 (1128)
251 KOG0803 Predicted E3 ubiquitin 25.1 1.8E+03 0.038 29.6 19.7 78 172-266 53-130 (1312)
252 PF10193 Telomere_reg-2: Telom 24.9 4.2E+02 0.0091 24.2 8.1 87 488-580 3-93 (114)
253 PF11864 DUF3384: Domain of un 24.9 1.1E+03 0.025 27.3 30.9 293 367-687 5-329 (464)
254 cd03567 VHS_GGA VHS domain fam 24.9 4.8E+02 0.01 24.8 8.7 75 114-189 38-116 (139)
255 PF13001 Ecm29: Proteasome sta 24.8 7.9E+02 0.017 29.0 12.6 204 11-254 235-449 (501)
256 PF12830 Nipped-B_C: Sister ch 24.6 5.4E+02 0.012 25.7 9.7 83 153-260 4-86 (187)
257 smart00185 ARM Armadillo/beta- 23.8 1.1E+02 0.0023 21.4 3.3 24 81-104 17-40 (41)
258 TIGR02270 conserved hypothetic 23.5 3.7E+02 0.0081 30.8 9.1 86 78-186 88-173 (410)
259 KOG0943 Predicted ubiquitin-pr 23.2 50 0.0011 41.4 2.1 9 705-713 1532-1540(3015)
260 KOG4535 HEAT and armadillo rep 22.6 6E+02 0.013 29.3 9.9 130 414-545 447-587 (728)
261 PF08623 TIP120: TATA-binding 22.3 3.6E+02 0.0078 26.6 7.5 98 153-271 5-117 (169)
262 PF06543 Lac_bphage_repr: Lact 22.3 82 0.0018 23.5 2.2 21 63-83 25-45 (49)
263 KOG4500 Rho/Rac GTPase guanine 22.1 1.2E+03 0.026 26.6 12.2 148 448-601 316-474 (604)
264 COG5218 YCG1 Chromosome conden 21.5 1.8E+02 0.0039 34.1 5.9 70 445-519 90-162 (885)
265 KOG2256 Predicted protein invo 21.4 1.5E+03 0.032 27.4 21.2 78 305-401 397-475 (661)
266 PF12530 DUF3730: Protein of u 21.2 9.4E+02 0.02 25.0 12.6 166 498-684 10-185 (234)
267 PF10446 DUF2457: Protein of u 21.2 1.1E+02 0.0024 34.6 4.0 8 944-951 113-120 (458)
268 PF12783 Sec7_N: Guanine nucle 21.1 4.6E+02 0.01 25.6 8.3 72 114-188 73-145 (168)
269 cd08789 CARD_IPS-1_RIG-I Caspa 21.0 2.4E+02 0.0051 24.2 5.3 45 341-396 29-73 (84)
270 KOG2256 Predicted protein invo 20.7 1.5E+03 0.033 27.3 20.5 32 365-396 295-326 (661)
271 PF12231 Rif1_N: Rap1-interact 20.6 1.2E+03 0.027 26.1 22.9 140 388-538 37-186 (372)
272 COG1413 FOG: HEAT repeat [Ener 20.5 2.4E+02 0.0052 31.1 6.9 53 81-139 185-237 (335)
273 KOG4364 Chromatin assembly fac 20.5 53 0.0011 38.6 1.5 10 816-825 492-501 (811)
274 cd03569 VHS_Hrs_Vps27p VHS dom 20.5 5.7E+02 0.012 24.3 8.4 73 114-189 41-114 (142)
275 TIGR02270 conserved hypothetic 20.2 6.3E+02 0.014 29.0 10.1 114 15-142 88-205 (410)
276 PF14668 RICTOR_V: Rapamycin-i 20.0 2.5E+02 0.0053 23.4 5.0 57 416-480 3-59 (73)
No 1
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=6.5e-143 Score=1195.56 Aligned_cols=923 Identities=36% Similarity=0.579 Sum_probs=836.5
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhccccccccccCC
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGEESFELP 67 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~~~~~~~ 67 (966)
+..+++.++|.+.+|||+++|.+||.+|++++..+ |.|+||+||++||++.++.|+.|
T Consensus 1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred CcHHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 35688999999999999999999999999999976 88999999999999999999987
Q ss_pred C-CChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc
Q 046316 68 A-VSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL 146 (966)
Q Consensus 68 ~-i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l 146 (966)
. .+++.|..||+.|+.++.++++|||+++||+|+.||++|||++||+|+|.++.++.+ +|.+.+||||+||.++++++
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS-GNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHH
Confidence 7 999999999999999999999999999999999999999999999999999999998 59999999999999999999
Q ss_pred cccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHH--HHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCC
Q 046316 147 DDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKA--LSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHP 224 (966)
Q Consensus 147 ~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~a--l~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~ 224 (966)
..++...+++..++.++.++.....++..+|..+ +++|++|+.+++...+.....++.++.+.+++||+.|.+.++.+
T Consensus 160 ~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~ 239 (1005)
T KOG2274|consen 160 DVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRN 239 (1005)
T ss_pred HHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 8877778889999999999987776777666554 59999999999888777777788999999999999999999885
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHH
Q 046316 225 VQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSF 304 (966)
Q Consensus 225 ~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l 304 (966)
. .++|.+++++.|+++.+.++||+++.+++..++.+.|+.+.+++..|++..++.+++....++|++|+..+++.+
T Consensus 240 ~----g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l 315 (1005)
T KOG2274|consen 240 D----GSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETL 315 (1005)
T ss_pred c----cchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHh
Confidence 4 367899999999999999999999999999999999999999999999999988877777789999999999999
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhC
Q 046316 305 VIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCG 384 (966)
Q Consensus 305 ~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~ 384 (966)
+.++++|++.++....+++.++..++++++.++-|+|+++++++.|.+|||+||.+|++. |++|.++.+++.++...|+
T Consensus 316 ~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~~rd~~~~v~~~f~ 394 (1005)
T KOG2274|consen 316 VIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARISVRDLLLEVITTFG 394 (1005)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhhHHHHHHHHHHhcc
Confidence 999999999999888888888878999999999999999999999999999999999877 9999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCCh
Q 046316 385 REGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYP 464 (966)
Q Consensus 385 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 464 (966)
...+.++.....++++++++....+++.||+..|+++++.+....+- ..++...++...+...+. .+..|
T Consensus 395 ~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--------~~dd~l~~l~~~~~~~l~--~~e~P 464 (1005)
T KOG2274|consen 395 NEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--------ANDDKLIELTIMIDNGLV--YQESP 464 (1005)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--------chHHHHHHHHHHHHhhcc--cccCH
Confidence 99999999999999999999888888899999999999998876321 123444445555555554 47889
Q ss_pred hHHHHHHHHHHHhhhh--cChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhh
Q 046316 465 FLYARIFASVARFSSA--ISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQ 542 (966)
Q Consensus 465 ~Lr~Ra~~~l~~f~~~--~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 542 (966)
+|-+||+|++++|++. ..++....++...++.+..+...++|++|+++++.+| ....++|++|.|+++|.++..+
T Consensus 465 ~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~ 541 (1005)
T KOG2274|consen 465 FLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASK 541 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHccc
Confidence 9999999999999998 5678999999999999998888999999999999999 4578999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhh
Q 046316 543 ARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPI 621 (966)
Q Consensus 543 ~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~ 621 (966)
+++|++..+||+|..+++.|+ +++...+.|+|+++.+|.++.+||++...+++||+.++....||.+++++++|.+.++
T Consensus 542 ~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisi 621 (1005)
T KOG2274|consen 542 SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISV 621 (1005)
T ss_pred ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-CCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccC
Q 046316 622 LNNPQ-QQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGD 700 (966)
Q Consensus 622 l~~~~-~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~ 700 (966)
++.+. ..+.+++..++|++++++|+.|++++..++.++||++.++.++|+|++.+|+|++||++||.++.+|+++|+++
T Consensus 622 l~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e 701 (1005)
T KOG2274|consen 622 LQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDE 701 (1005)
T ss_pred HcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccC
Confidence 99665 34468999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 046316 701 SGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHM 780 (966)
Q Consensus 701 ~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~ 780 (966)
++..+.++|+++++||+|+.+|++|++||+|+.+|+.++|.+++|.+++||+|++.||+++++.+++|||++|||||++.
T Consensus 702 ~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 702 PGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred CCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC
Confidence 77779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHHH----ccCCcccccceeccccccCC-
Q 046316 781 SAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLL----STRHPELAKINVQGHLIKSD- 855 (966)
Q Consensus 781 ~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll----~~~d~~l~~i~v~g~~i~~~- 855 (966)
+++++++||+|+|++++.++|++||++|+++|+.|+|.|++|+++.|+||++ +++|+||++|+|||++|++.
T Consensus 782 ---~~~~~l~FL~Slp~~~g~~AlefVMteW~srqhl~~g~ye~kv~i~alc~al~~~~~~ddkrLq~V~VkGelI~s~d 858 (1005)
T KOG2274|consen 782 ---DLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQHLYFGEYEGKVSIKALCKALQHLISTDDKRLQKVRVKGELIYSMD 858 (1005)
T ss_pred ---CHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHhhhccCChhhceeeECCeecccCC
Confidence 9999999999999999999999999999999999999999999888888876 78999999999999999984
Q ss_pred CCccchhhhccCCCceEEecchHHHHHHHHHHHHHHHhhhcC---------CCCCCCCcccccccCCCCccchhhhhccc
Q 046316 856 AGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQVLG---------DDDEEDSDWEEVQEGDVESDKDLIYSTGA 926 (966)
Q Consensus 856 ~gi~tRs~a~~~p~~~t~ip~~~Ki~klL~~~l~~~~~~~~~---------~~d~~~~dwe~~~~~~~~~~~~~~~~~~~ 926 (966)
+|||||||||++|+|||+||+++||+|+|++||++.+|+... .||+ +|+|||.+++.++. ++. .|
T Consensus 859 ~~I~TRSka~k~Perwt~IPl~vKIlkLli~Els~~~e~~~~~qa~p~e~sqdd~-nD~wdD~~~~~e~~-d~l----~g 932 (1005)
T KOG2274|consen 859 EGIITRSKAKKNPERWTNIPLLVKILKLLISELSNVSEQNAARQAIPSEWSQDDG-NDMWDDQPEEEEEE-DGL----AG 932 (1005)
T ss_pred CCeeehhhhccCchheeeccHHHHHHHHHHHHHHHHhhcccccccCCchhhhhcc-ccccccCCcCcccc-cch----hh
Confidence 679999999999999999999999999999999999999331 2333 66687766522222 111 22
Q ss_pred ccCCCCchhHHHHhhccCCCCCcccCcC-CCCCccccCCC
Q 046316 927 ASLGRPTYEHLEAMAKNQGDDYEDDILC-VSDPLNEVVSR 965 (966)
Q Consensus 927 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~d~~~~~~~~ 965 (966)
+. -+|.| ....|..+|||.|||+ .+||+||+||+
T Consensus 933 ~~----lsD~l-~~d~D~~eDDe~dd~~~lkd~~yq~dlq 967 (1005)
T KOG2274|consen 933 QL----LSDIL-ETDVDEYEDDEEDDPDLLKDPLYQIDLQ 967 (1005)
T ss_pred hh----HHHHH-hccccccccccccchhhccCcchhhhHH
Confidence 22 12322 2222334466777788 99999999986
No 2
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-99 Score=855.59 Aligned_cols=812 Identities=22% Similarity=0.310 Sum_probs=664.0
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhcccccc-ccccC
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGE-ESFEL 66 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~-~~~~~ 66 (966)
||.+.+++++.+|.+||++.|++||++|++++++| |+|||||.|.++|+... ++ ++
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g-~~ 79 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPG-RP 79 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCC-Cc
Confidence 67889999999999999999999999999999998 88999999999999774 11 34
Q ss_pred CCCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc
Q 046316 67 PAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL 146 (966)
Q Consensus 67 ~~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l 146 (966)
..+.+++|..||++|+.++..++..||.++..|+..|...|||++||++++.+-+.++++ +.+.++|||.||+++++..
T Consensus 80 ~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~-~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 80 FGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQ-DANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred CCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCc-chhhHHHHHHHHHHHHHHH
Confidence 469999999999999999998999999999999999999999999999999999999995 8899999999999999854
Q ss_pred c------ccchhhhhhhHHHHHHHHhcC----CCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhh--HhhhHHHH
Q 046316 147 D------DAIVPKLVPVLFPVLHTIVSF----PESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALM--MPMLKPWM 214 (966)
Q Consensus 147 ~------~~~~~~i~~~l~p~L~~i~~~----~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~w~ 214 (966)
. +..+..++..+||.+++++.+ .+..+..+.+.++|+|++++.. +.|..+ .+.+..||
T Consensus 159 e~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~----------~LP~~L~~~~~f~~W~ 228 (1010)
T KOG1991|consen 159 EWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY----------ELPLELSAPETFTSWM 228 (1010)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH----------hCCHHhhCchhHHHHH
Confidence 2 235778888888888887764 3334677888999999998864 233333 36899999
Q ss_pred HHHHHHhcCCCCCC----CCC------hhhHHHHHHHHHHHHHHhcchhhH--HhhHHHHHHHHHHHHH-hHHHHHHhhc
Q 046316 215 NHFSIILEHPVQPE----DPD------DWGVKMEVLKCLNQFIQNFPSLAE--SEFLVVVRSLWQTFVS-SLRVYTRSSI 281 (966)
Q Consensus 215 ~~~~~~L~~~~~~~----d~~------~~~lk~~~~~~L~~l~~~f~~~~~--~~~~~~~~~~~~~~~~-~~~~y~~~~i 281 (966)
++|.+++++|.|.. |++ -||+|||++.+|+|+++||+++.. +....|...+...+.. ++.+|. ..+
T Consensus 229 ~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~l-k~l 307 (1010)
T KOG1991|consen 229 ELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFL-KIL 307 (1010)
T ss_pred HHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999987732 222 279999999999999999987432 3333333333333322 444442 222
Q ss_pred cCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHH-HhhcCCHHHHHHHhhCHHHHhhc
Q 046316 282 EGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTI-AFLQMTEQQIHIWSIDANQFLAD 360 (966)
Q Consensus 282 ~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li-~~~~lt~ed~e~w~~Dp~~fv~d 360 (966)
+. |.. |.|++ +++...++.|+..+++++.+|++++||+..++..+| |+||++++|+|+|++||.||+|.
T Consensus 308 ~~--------~~~-~~yls-~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~ 377 (1010)
T KOG1991|consen 308 EQ--------WRQ-QLYLS-DRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRK 377 (1010)
T ss_pred HH--------HHh-cccCC-HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHh
Confidence 21 222 45566 899999999999999999999999999999999999 99999999999999999999985
Q ss_pred c---cCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhc
Q 046316 361 E---DESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVS 437 (966)
Q Consensus 361 e---~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~ 437 (966)
- .|+.||+|.||.+|+.+++.++|+++++.+++++.+.++.|..+. .+.++.|.+|+||+++|++++.+.++ +
T Consensus 378 ~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~--~~~~~~rqkdGAL~~vgsl~~~L~K~-s- 453 (1010)
T KOG1991|consen 378 KFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEAS--PPNKNPRQKDGALRMVGSLASILLKK-S- 453 (1010)
T ss_pred cCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccC--CCccChhhhhhHHHHHHHHHHHHccC-C-
Confidence 4 457899999999999999999999999999999999999876543 23457899999999999999766432 2
Q ss_pred CCccc--cHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhh-c-ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHH
Q 046316 438 GLTSV--RLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSA-I-SDGVLEHFLSAAITTIAMDVPPPVKVGACRAL 513 (966)
Q Consensus 438 ~~~~~--~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~-~-~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al 513 (966)
+| .++.|+.+||.|+|+ ++..+||+||||++++|++. + ++..+..+++.+.++|.++++.|||+.|+-||
T Consensus 454 ---~~~~~mE~flv~hVfP~f~---s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalAL 527 (1010)
T KOG1991|consen 454 ---PYKSQMEYFLVNHVFPEFQ---SPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALAL 527 (1010)
T ss_pred ---chHHHHHHHHHHHhhHhhc---CchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHH
Confidence 43 389999999999998 89999999999999999964 4 56889999999999999888999999999999
Q ss_pred HhhcccC--CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc--hhhcccccchHHHHHHHHhh-cC---
Q 046316 514 SELLPKA--NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF--LTASMEPMISPLILNIWALH-VS--- 585 (966)
Q Consensus 514 ~~~~~~~--~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~--~~~~~~~~l~p~~l~l~~~~-~~--- 585 (966)
+.|+.+. .++.+.|+++++|+.|++++++.+.|.+..+||+++..++..- ++..+.+.|+...+++...+ ..
T Consensus 528 q~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~ 607 (1010)
T KOG1991|consen 528 QSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDES 607 (1010)
T ss_pred HHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 9999885 3467999999999999999999999999999999999998742 55544444444444442210 01
Q ss_pred ChhHHHHHHHHHHHHH-------cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHH
Q 046316 586 DPFISIDAIEVLEAIK-------CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDV 658 (966)
Q Consensus 586 d~~~~~~~~~~l~~l~-------~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~ 658 (966)
+.--..+|++||.++. +.|+.+.+++..++|++..+++++..+.+..+.+.+.-++.+.+.+++.+|+.
T Consensus 608 ~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~l---- 683 (1010)
T KOG1991|consen 608 DDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGL---- 683 (1010)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHH----
Confidence 1123456777776654 55889999999999999999998765444444444444555556778899986
Q ss_pred HhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhc-CCCCCCccccchHHHHHHHHH
Q 046316 659 CFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLL-NPDLESSGSLFVGSYILQLIL 737 (966)
Q Consensus 659 ~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL-~~~~~~~~~~~vg~Lv~~li~ 737 (966)
+|.+.+++. .++.+++.+++.+|.||+.+|..++++ + +.|++.++.|+.++| +.+.+|+++..+++|++.+++
T Consensus 684 -l~li~e~~~-~~~~dyf~d~~~~l~N~vt~g~~~~~s---~-~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL 757 (1010)
T KOG1991|consen 684 -LELILEVFQ-DDGIDYFTDMMPALHNYVTYGTPSLLS---N-PDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIIL 757 (1010)
T ss_pred -HHHHHHHHh-hhhHHHHHHHHHHHhhheeeCchhhhc---c-chHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 688888874 667899999999999999999998885 2 679999999999988 556688888889999999999
Q ss_pred hCChhhhHhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccc
Q 046316 738 HLPSQMAQHIRDLVAALVRRLQS-AQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQG 816 (966)
Q Consensus 738 ~~~~~l~~~l~~iL~a~~~rL~~-~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~ 816 (966)
++++.+++++|.++++++.|+.. .++..++..++.|++.++++ ||..+++.|... .-+..|++.|+....
T Consensus 758 ~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyy---nP~ltL~iLe~~------~~~~~ff~~wf~~~~ 828 (1010)
T KOG1991|consen 758 NCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYY---NPKLTLGILENQ------GFLNNFFTLWFQFIN 828 (1010)
T ss_pred HhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc---CcHHHHHHHHHc------CCcccHHHHHHHHHH
Confidence 99998899999999999999998 77789999999999999999 999999999742 123449999999999
Q ss_pred cccccchhHHHHHHHHHHHcc-CCcccccceeccccccCCCCccchhhhccCCCceEEecchHHHHHHHHHHHHHHHhhh
Q 046316 817 EIQGAYPIKVTTTALALLLST-RHPELAKINVQGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQV 895 (966)
Q Consensus 817 ~~~g~~~~K~~~laL~~Ll~~-~d~~l~~i~v~g~~i~~~~gi~tRs~a~~~p~~~t~ip~~~Ki~klL~~~l~~~~~~~ 895 (966)
.++..|+||+|++||++|+++ +.|.+++- |-|.+. |+.+-.+-.|++++..+.+..
T Consensus 829 ~~~~~HDkKlcvL~l~tli~l~~~~~~~~e-~l~~l~----------------------~~lv~L~~~Lp~ala~ra~~~ 885 (1010)
T KOG1991|consen 829 QFKKVHDKKLCVLGLLTLISLGQDPQLPSE-VLGQLG----------------------PALVELLLSLPEALAERAQVE 885 (1010)
T ss_pred HHHhhhhHHHHHHHHHHHHhccccCCchHH-HHHHHH----------------------HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 55555532 222332 233337777889998887764
Q ss_pred c
Q 046316 896 L 896 (966)
Q Consensus 896 ~ 896 (966)
+
T Consensus 886 e 886 (1010)
T KOG1991|consen 886 E 886 (1010)
T ss_pred c
Confidence 3
No 3
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-72 Score=613.12 Aligned_cols=775 Identities=17% Similarity=0.223 Sum_probs=617.3
Q ss_pred HHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhccccccccccCCCC
Q 046316 12 QQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGEESFELPAV 69 (966)
Q Consensus 12 ~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~~~~~~~~i 69 (966)
.+.++||+.+|+++|+++|+.||++|++++++| |+|||||.|.+.|+...++...+-.
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~De 81 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADE 81 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcc
Confidence 367999999999999999999999999999999 9999999999999986555344456
Q ss_pred ChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCC-CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhh---
Q 046316 70 SSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWP-EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSAD--- 145 (966)
Q Consensus 70 ~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P-~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~--- 145 (966)
..+.|+.++++++..+..++...|++.--+...|...||| +.|| ++|...+++.++ +.+.++.||.||+++++-
T Consensus 82 k~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~-ea~~vy~gLlcl~elfkayRw 159 (970)
T COG5656 82 KSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSS-EANHVYTGLLCLEELFKAYRW 159 (970)
T ss_pred cHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhccc-chhHHHHHHHHHHHHHHHHhh
Confidence 6777888888888887778889999999999999999999 8999 999999999984 899999999999999984
Q ss_pred -ccccc--hhhhhhhHHHHHHHHhcCCC---CC-cHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhH--hhhHHHHHH
Q 046316 146 -LDDAI--VPKLVPVLFPVLHTIVSFPE---SY-DRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMM--PMLKPWMNH 216 (966)
Q Consensus 146 -l~~~~--~~~i~~~l~p~L~~i~~~~~---~~-~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~w~~~ 216 (966)
+.++| ...+...+||.+.++.++.. ++ +.++-..++|.|.++... +.|.++. +.+..|+++
T Consensus 160 k~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~----------~LP~~lsa~e~f~sw~ql 229 (970)
T COG5656 160 KYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY----------SLPDFLSAIETFSSWFQL 229 (970)
T ss_pred hccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh----------hCCHHHccchhhHHHHHH
Confidence 44443 57888999999999887532 23 566777888988875532 2444443 589999999
Q ss_pred HHHHhcCCCCCC----CC-----Chh-hHHHHHHHHHHHHHHhcchhhHHh-hHHHHHHHHHHHHHhHHHHHHhhccCCC
Q 046316 217 FSIILEHPVQPE----DP-----DDW-GVKMEVLKCLNQFIQNFPSLAESE-FLVVVRSLWQTFVSSLRVYTRSSIEGTE 285 (966)
Q Consensus 217 ~~~~L~~~~~~~----d~-----~~~-~lk~~~~~~L~~l~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~i~~~~ 285 (966)
++.+++.|.|.. |+ +-| |+|||++-.|+|++++|.+....- -..+...+.+.+..++.+|.+ .++.
T Consensus 230 ~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffk-qie~-- 306 (970)
T COG5656 230 SLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFK-QIEE-- 306 (970)
T ss_pred HHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--
Confidence 999999987632 22 124 899999999999999999754321 123333444444445666633 3321
Q ss_pred CCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHH-HhhcCCHHHHHHHhhCHHHHhhccc--
Q 046316 286 DPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTI-AFLQMTEQQIHIWSIDANQFLADED-- 362 (966)
Q Consensus 286 ~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li-~~~~lt~ed~e~w~~Dp~~fv~de~-- 362 (966)
|.....|++ +...+.+..|+..|+..+.+|++++||++-++..+| |++|++++++|+|++||.+|+++-.
T Consensus 307 ------wgqgqLWls-d~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df 379 (970)
T COG5656 307 ------WGQGQLWLS-DIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDF 379 (970)
T ss_pred ------hhcCCeecc-hHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcch
Confidence 443445776 889999999999999888899999999999999999 9999999999999999999998544
Q ss_pred -CCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCcc
Q 046316 363 -ESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTS 441 (966)
Q Consensus 363 -d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~ 441 (966)
++++|+..||..|+..++.++++.+++++++++...++.+...++ +.++.|..|+||+++.++.+- .+..+ |
T Consensus 380 ~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~ps--n~dnarq~egalr~lasi~s~-itk~s----p 452 (970)
T COG5656 380 FDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPS--NIDNARQAEGALRLLASIKSF-ITKMS----P 452 (970)
T ss_pred hcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCC--ccccHHHHhhHHHHHHHHHHH-hccCc----h
Confidence 468999999999999999999999999999999999977644332 345789999999999999883 33222 3
Q ss_pred cc--HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhc-ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcc
Q 046316 442 VR--LGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAI-SDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLP 518 (966)
Q Consensus 442 ~~--~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~-~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~ 518 (966)
+. ++.|+.++|.|.++ ++..|||+|||.++++|.+.+ ++..+.++|+.+.++|.+ ++.||++.|+.|++.|+.
T Consensus 453 ~an~me~fiv~hv~P~f~---s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 453 AANVMEYFIVNHVIPAFR---SNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIF 528 (970)
T ss_pred HHHHHHHHHHHHhhHhhc---CcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHh
Confidence 32 78899999999998 899999999999999997766 457888999999999985 689999999999999998
Q ss_pred cC-CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc--hhhcccccchHHHHHHHHhh----cCChh---
Q 046316 519 KA-NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF--LTASMEPMISPLILNIWALH----VSDPF--- 588 (966)
Q Consensus 519 ~~-~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~--~~~~~~~~l~p~~l~l~~~~----~~d~~--- 588 (966)
+. .++.+..++|++|+.|+.+.++.+.|.+..+||.+++.+...- +++.++..++.-.+++ +.. ..|..
T Consensus 529 ~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlki-aq~l~ens~d~~s~v 607 (970)
T COG5656 529 NEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKI-AQSLLENSSDTSSVV 607 (970)
T ss_pred chhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHH-HHHHHcCCccccccc
Confidence 73 5678899999999999999999999999999999999998753 7776666666644444 222 21211
Q ss_pred --HHHHHHHHHHHHH-------cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHH
Q 046316 589 --ISIDAIEVLEAIK-------CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVC 659 (966)
Q Consensus 589 --~~~~~~~~l~~l~-------~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~ 659 (966)
-.++|.++|.++. +.|..+..++..+.|++..++.++..+++....+.++-.+.+.|-..+-+|+.
T Consensus 608 DDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi----- 682 (970)
T COG5656 608 DDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGI----- 682 (970)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHH-----
Confidence 2346667666554 45888999999999999999998754333333334444556666666667774
Q ss_pred hHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCC-CCCccccchHHHHHHHHHh
Q 046316 660 FDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPD-LESSGSLFVGSYILQLILH 738 (966)
Q Consensus 660 fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~-~~~~~~~~vg~Lv~~li~~ 738 (966)
|..+.+++....-..+......++.+||.+|..+|.+ + +.|...++.|..+.+..+ ..-.+...+|+++..++.+
T Consensus 683 ~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~---~-~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln 758 (970)
T COG5656 683 FELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMD---A-GIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILN 758 (970)
T ss_pred HHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccc---c-cchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHH
Confidence 4555565543322488999999999999999998875 2 678889999998777443 3235677899999999999
Q ss_pred CChh-hhHhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccc
Q 046316 739 LPSQ-MAQHIRDLVAALVRRLQS-AQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQG 816 (966)
Q Consensus 739 ~~~~-l~~~l~~iL~a~~~rL~~-~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~ 816 (966)
+++. +++++|-+.+++-+.+.. .+...+..-++.++...+++ +|..+++.|.. +.-+..+|.+|+++.+
T Consensus 759 ~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~aleliinnli~---~P~eTLqiLe~------qg~l~~FF~~wf~~ip 829 (970)
T COG5656 759 IRDELLSQYLPLFISVAGSGLKMIDELGPASVYALELIINNLIL---RPKETLQILEE------QGYLQSFFEKWFSQIP 829 (970)
T ss_pred ccchhHHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhc---ChHHHHHHHHH------cCcHHHHHHHHHhcCc
Confidence 9997 488999777777655655 34466777777777888888 89999999963 3368889999999999
Q ss_pred cccccchhHHHHHHHHHHHccC
Q 046316 817 EIQGAYPIKVTTTALALLLSTR 838 (966)
Q Consensus 817 ~~~g~~~~K~~~laL~~Ll~~~ 838 (966)
+|+++|+||++++|+.+++.++
T Consensus 830 kfkrvhdkKLsvlaIltii~l~ 851 (970)
T COG5656 830 KFKRVHDKKLSVLAILTIIRLQ 851 (970)
T ss_pred chhhhhhhHhHHHHHHHHHHhc
Confidence 9999999999999999999887
No 4
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-65 Score=567.81 Aligned_cols=775 Identities=17% Similarity=0.262 Sum_probs=607.8
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhccccccccccCC
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGEESFELP 67 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~~~~~~~ 67 (966)
.+.+.|.++|.+|++||+++||.||..|++++.|+ |+++|||||+++|.+..++ +.
T Consensus 2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~--~~ 79 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS--PI 79 (960)
T ss_pred ccHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC--cc
Confidence 46789999999999999999999999999999985 8899999999999988776 45
Q ss_pred CCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcc
Q 046316 68 AVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLD 147 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~ 147 (966)
.+.+++|+.||..++.++-+++..|+.+++.+|+.||++|||+.||+|+|.|++.+++ +|.+...|.|.+-+.+++...
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~-~D~~~~~gVL~tahsiFkr~R 158 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSS-GDFNVINGVLVTAHSIFKRYR 158 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999889999999999999999999999999999999999998 599999999999999998643
Q ss_pred c-----cc----------hhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhh-ccchhHHHHhhHhhhH
Q 046316 148 D-----AI----------VPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMS-GVCKTEMFALMMPMLK 211 (966)
Q Consensus 148 ~-----~~----------~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~-~~~~~~~~~~~~~~l~ 211 (966)
- +- |......+|.....+.+...+... +++++..++..++.+. +...+++++|+++++.
T Consensus 159 ~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~-----~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~ 233 (960)
T KOG1992|consen 159 PEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAA-----ALNILFGVLLLICKLFYSLNFQDIPEFFEDNMK 233 (960)
T ss_pred cccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchh-----HHHHHHHHHHHHHHHHHhhhcccchHHHHhhHH
Confidence 1 11 223344455555555543322212 2333222222222221 2233579999999999
Q ss_pred HHHHHHHHHhcCCCCCC--CCCh----hhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCC
Q 046316 212 PWMNHFSIILEHPVQPE--DPDD----WGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTE 285 (966)
Q Consensus 212 ~w~~~~~~~L~~~~~~~--d~~~----~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~ 285 (966)
.||+.|.++++...|.. |.++ .++|.+++++++.+.++|.+.|.+++++|+..+|.++.+. ..
T Consensus 234 ~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~---------s~-- 302 (960)
T KOG1992|consen 234 TWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVST---------SP-- 302 (960)
T ss_pred HHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhc---------CC--
Confidence 99999999999765532 2222 4799999999999999999999999999999999998761 11
Q ss_pred CCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHH--HHhHHHHHHHHH-HhhcCCHHHHHHHhhCHHHHhhccc
Q 046316 286 DPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVI--ASNVRELVYHTI-AFLQMTEQQIHIWSIDANQFLADED 362 (966)
Q Consensus 286 ~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l--~~~l~~li~~li-~~~~lt~ed~e~w~~Dp~~fv~de~ 362 (966)
+ ..+|.++..+++||+.+++.+.+...+ .+.+.+++..++ |.+++.++|+|.+|+||.+|+|.+-
T Consensus 303 ---~---------~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDl 370 (960)
T KOG1992|consen 303 ---D---------TKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDL 370 (960)
T ss_pred ---C---------ccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhc
Confidence 1 234789999999999999888877666 356899999998 9999999999999999999998554
Q ss_pred C--CccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCC-
Q 046316 363 E--STYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGL- 439 (966)
Q Consensus 363 d--~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~- 439 (966)
+ |..|.|.+|.++++.|+++|.....+.+..+++..+++|...+ ..+|+.||.++|++.+++..-... ..|.
T Consensus 371 EGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nP----S~nWk~kd~aiyL~talaik~~t~-~~Gvt 445 (960)
T KOG1992|consen 371 EGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNP----SGNWKKKDRAIYLVTALAIKGQTA-KHGVT 445 (960)
T ss_pred ccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCC----CccccccchhhhhhHHHHhhcchh-hccee
Confidence 4 5689999999999999999998888888999999999887654 237999999999999998642211 1122
Q ss_pred ---ccccHHHHHHHHHhhhhcC-CCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHh
Q 046316 440 ---TSVRLGELLEQMITEDIGT-GVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSE 515 (966)
Q Consensus 440 ---~~~~~~~~l~~~i~~~l~~-~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~ 515 (966)
.-+++..|+.+.|+|++.+ ...++|+||+.++..+--|...++++.+..+++.++.+|.++ +.+|..+|+.|+..
T Consensus 446 stn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~-s~vvhsYAA~aiEk 524 (960)
T KOG1992|consen 446 STNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAE-SRVVHSYAAIAIEK 524 (960)
T ss_pred eccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCc-chHHHHHHHHHHHh
Confidence 1267899999999999984 346899999999999999999999999999999999999855 78899999999999
Q ss_pred hccc--C------CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhccc----ccchHHHHHHHHh
Q 046316 516 LLPK--A------NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASME----PMISPLILNIWAL 582 (966)
Q Consensus 516 ~~~~--~------~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~----~~l~p~~l~l~~~ 582 (966)
++-- . ..+.+.|++..+++.|++-+.-.+......+|.+|..+++..+ .+-.+. ..+..++.++ +|
T Consensus 525 il~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v-~K 603 (960)
T KOG1992|consen 525 LLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEV-SK 603 (960)
T ss_pred ccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHH-hc
Confidence 8642 1 2467889999888888877654444445567778888877655 332333 3333344444 77
Q ss_pred hcCChhHHHHHHHHH----HHHH-cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHH
Q 046316 583 HVSDPFISIDAIEVL----EAIK-CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYD 657 (966)
Q Consensus 583 ~~~d~~~~~~~~~~l----~~l~-~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~ 657 (966)
++++|....-..|.+ ...+ +.|.....+++.++|++..++.++.+ +++..++++++.++..+.++.++. +.
T Consensus 604 NPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~---EfiPYvfQlla~lve~~~~~ip~~-~~ 679 (960)
T KOG1992|consen 604 NPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQ---EFIPYVFQLLAVLVEHSSGTIPDS-YS 679 (960)
T ss_pred CCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCchh-HH
Confidence 888887665444433 3333 33778889999999999999998654 577888999999999887766665 44
Q ss_pred HHhHHHHHHHhccCc-hHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHH
Q 046316 658 VCFDAVIRIILQSED-HSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLI 736 (966)
Q Consensus 658 ~~fp~l~~~l~~s~d-~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li 736 (966)
.+||+++.--+ |+ .+.+......+.+|+..|++.+.+ ...+..+++++.||......|. +...|+.+++
T Consensus 680 ~l~~~lLsp~l--W~r~gNipalvrLl~aflk~g~~~~~~-----~~~l~~iLGifqkLiaSka~Dh---~GF~LLn~i~ 749 (960)
T KOG1992|consen 680 PLFPPLLSPNL--WKRSGNIPALVRLLQAFLKTGSQIVEA-----ADKLSGILGIFQKLIASKANDH---HGFYLLNTII 749 (960)
T ss_pred HHHHHhcCHHH--HhhcCCcHHHHHHHHHHHhcCchhhcc-----cccchhHHHHHHHHhcCcccch---hHHHHHHHHH
Confidence 55666655443 21 234667788999999999998864 3457899999999996555544 4457899999
Q ss_pred HhCChh-hhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHH-HHHhcc
Q 046316 737 LHLPSQ-MAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVM-SEWTKL 814 (966)
Q Consensus 737 ~~~~~~-l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl-~~W~~~ 814 (966)
..++.. +.||+.+|...+++|++++|++.|+.+++..|+...... .....+++...|+++ .+..++ +.|+..
T Consensus 750 ~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~--~~~~l~e~~d~IQ~~----~fg~l~e~~ii~~ 823 (960)
T KOG1992|consen 750 ESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKK--GGLMLAEVIDGIQPG----MFGMLLENFIIPE 823 (960)
T ss_pred hcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh--hhHHHHHHHhhcchh----HHHHHHHHhcccc
Confidence 999865 689999999999999999999999999999888776652 334555677665433 334333 457888
Q ss_pred cccccccchhHHHHHHHHHHHccCCccc
Q 046316 815 QGEIQGAYPIKVTTTALALLLSTRHPEL 842 (966)
Q Consensus 815 ~~~~~g~~~~K~~~laL~~Ll~~~d~~l 842 (966)
.+.+.+.-++|.+.+|..+++....++.
T Consensus 824 l~~i~~~~~rk~~avg~~~l~~e~~~~~ 851 (960)
T KOG1992|consen 824 LPKIILRVDRKIMAVGATGLLTETPELL 851 (960)
T ss_pred chhhhhhhhHHHHHHHHhhhhhhcHHhh
Confidence 9999999999999999999998775555
No 5
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-64 Score=555.48 Aligned_cols=779 Identities=17% Similarity=0.232 Sum_probs=590.6
Q ss_pred HHHHHHHhcCCCHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhccccccccccCCCCChH
Q 046316 15 LLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGEESFELPAVSSE 72 (966)
Q Consensus 15 l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~~~~~~~~i~~~ 72 (966)
++++|+++.|||..++|.||++|++|+.+| |+|||||.|.+||++.... .+++|
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~----sl~~E 77 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKM----SLPPE 77 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcc----cCCHH
Confidence 689999999999999999999999999999 9999999999999966543 79999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhccc---CchhhHhHHHHHHHHHHhhcccc
Q 046316 73 EKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQ---SNMNGVHGGLRCLALLSADLDDA 149 (966)
Q Consensus 73 ~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~---~~~~~~~~aL~~L~~l~~~l~~~ 149 (966)
+|+.||.+++....+++..+..|.|.+|++|||.|||.+||+|+|.|.+.+++. +|....|+.|.+|+.+.|.+.++
T Consensus 78 EK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~ 157 (978)
T KOG1993|consen 78 EKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATK 157 (978)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999874 47788999999999999987653
Q ss_pred -------chhhhhhhHHHHHHHHhcCCC------------CC----cHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhh
Q 046316 150 -------IVPKLVPVLFPVLHTIVSFPE------------SY----DRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALM 206 (966)
Q Consensus 150 -------~~~~i~~~l~p~L~~i~~~~~------------~~----~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~ 206 (966)
.|...++.+++.+..++-++. ++ +.+.-..++|+++..+- .+..+..-.+ +
T Consensus 158 RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv-----~G~~~P~kse-~ 231 (978)
T KOG1993|consen 158 RLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVV-----FGFQNPSKSE-F 231 (978)
T ss_pred HHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH-----hccCCcchhh-H
Confidence 367778888887766654431 00 11111235555554432 2222221122 4
Q ss_pred HhhhHHHHHHHHHHhcCCCCCC-CC--Ch--hhHHHHHHHHHHHHHHhcchhhHH--hhHHHHHHHHHHHHHhHHHHHHh
Q 046316 207 MPMLKPWMNHFSIILEHPVQPE-DP--DD--WGVKMEVLKCLNQFIQNFPSLAES--EFLVVVRSLWQTFVSSLRVYTRS 279 (966)
Q Consensus 207 ~~~l~~w~~~~~~~L~~~~~~~-d~--~~--~~lk~~~~~~L~~l~~~f~~~~~~--~~~~~~~~~~~~~~~~~~~y~~~ 279 (966)
.+.+..+++.-...+....+++ +. .+ .+.-+...|.+..++++.|--|.. ..+..+.....
T Consensus 232 ~eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~------------ 299 (978)
T KOG1993|consen 232 FERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSID------------ 299 (978)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhh------------
Confidence 4555666665444333222111 11 01 133344556666677776654443 22222221111
Q ss_pred hccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhc--ChhH---------------------HHHH--HHhHHHHHH
Q 046316 280 SIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVG--SAKL---------------------VKVI--ASNVRELVY 334 (966)
Q Consensus 280 ~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~--~~~~---------------------~~~l--~~~l~~li~ 334 (966)
+|. ++.+.-+-.+|...++++..++++..+..++. +.+. +..+ .+.+..++.
T Consensus 300 yIf---~~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd 376 (978)
T KOG1993|consen 300 YIF---DEYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCD 376 (978)
T ss_pred hhh---cccchhcccccccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHH
Confidence 111 00111122345556789999999988886541 1111 0011 245888999
Q ss_pred HHH-HhhcCCHHHHHHHhhCHHHHhhcccC-C-ccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 046316 335 HTI-AFLQMTEQQIHIWSIDANQFLADEDE-S-TYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGST 411 (966)
Q Consensus 335 ~li-~~~~lt~ed~e~w~~Dp~~fv~de~d-~-~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 411 (966)
.++ .|..+|++|.|+|..||++|+.++++ + .|++|+||+.++.++.+.|++-.++.++..+.+..+..... ...+-
T Consensus 377 ~Lvt~YflLt~~eLEeW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt-~~~~l 455 (978)
T KOG1993|consen 377 LLVTHYFLLTEEELEEWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPT-VTEDL 455 (978)
T ss_pred HHHHHHHhcCHHHHHHHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCC-ccchH
Confidence 999 99999999999999999999998776 3 59999999999999999999877777777776544331000 01133
Q ss_pred chhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhh-cChhHHHHHH
Q 046316 412 VWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSA-ISDGVLEHFL 490 (966)
Q Consensus 412 ~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~-~~~~~~~~~l 490 (966)
+....|+|++.++|..+..+.+ .+|+..|+.+.++|++........++|+|..|++|+|.+. ++.+.....|
T Consensus 456 ~a~L~KDAiYaa~g~~a~~l~~-------~~dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y 528 (978)
T KOG1993|consen 456 TALLLKDAIYAAFGLAAYELSN-------ILDFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLY 528 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------cCCHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHH
Confidence 4578999999999999988764 3789999999999999855567789999999999999986 4568888899
Q ss_pred HHHHhhhcCCCCCcEehhHHHHHHhhcccC--CCCCccccHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhcc-hhh
Q 046316 491 SAAITTIAMDVPPPVKVGACRALSELLPKA--NKGNFQPQMMGLFSSLADLLHQARD-ETLHLVLETLQAAIKAGF-LTA 566 (966)
Q Consensus 491 ~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~--~~~~l~p~l~~il~~L~~ll~~~~~-d~l~~~le~l~~~i~~~~-~~~ 566 (966)
.+.++.|++.++.+||++++++++-.+++- .++.+.||++.+...+++++..+++ |+...+|.++..++..-. ..+
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 999999987679999999999999999872 5689999999999999999999988 999999999998887654 666
Q ss_pred cccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhh
Q 046316 567 SMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLK 645 (966)
Q Consensus 567 ~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~ 645 (966)
+++.+++.++..+|......+.+|++.+..+..+++. ......+...++|+|....+.+.++...+.++++++|..++.
T Consensus 609 P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~ 688 (978)
T KOG1993|consen 609 PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLM 688 (978)
T ss_pred HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHh
Confidence 7888899999999999999999999999999999843 444445667899999999987777777889999999999999
Q ss_pred cCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccc
Q 046316 646 SASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGS 725 (966)
Q Consensus 646 ~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~ 725 (966)
+++ .+.+. +-.+||++..++..+. +.++.+...+++|+-.+...|++ .|...+++.+.+++.. +.+.+-
T Consensus 689 n~~-~l~p~-ll~L~p~l~~~iE~st--e~L~t~l~Ii~sYilLd~~~fl~------~y~~~i~k~~~~~l~d-vr~egl 757 (978)
T KOG1993|consen 689 NSQ-KLTPE-LLLLFPHLLYIIEQST--ENLPTVLMIISSYILLDNTVFLN------DYAFGIFKKLNDLLDD-VRNEGL 757 (978)
T ss_pred ccc-ccCHH-HHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhccHHHHH------HHHHHHHHHHHHHHHH-hhHHHH
Confidence 986 33333 2246899999998765 45999999999999998888773 6777888888887753 344556
Q ss_pred cchHHHHHHHHHhCChhhhH-hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCc
Q 046316 726 LFVGSYILQLILHLPSQMAQ-HIRDLVAALVRRLQS-AQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNS 803 (966)
Q Consensus 726 ~~vg~Lv~~li~~~~~~l~~-~l~~iL~a~~~rL~~-~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~ 803 (966)
..++++++.++..-+ -+++ +.+++|..++..+.. .+-|.+...++.|+||..+. ||+.+..+|...+.- ..-
T Consensus 758 ~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~---n~~~~msvlqt~~~~--d~~ 831 (978)
T KOG1993|consen 758 QAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR---NPSLFMSVLQTKNTY--DIL 831 (978)
T ss_pred HHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc---ChHHHHHHHHhhhhH--HHH
Confidence 688899988876532 2343 345566666655544 34477888899999999999 999999999654311 123
Q ss_pred HHHHHHHHhcccccccccchhHHHHHHHHHHHccCCcccc
Q 046316 804 FVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELA 843 (966)
Q Consensus 804 L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~~~d~~l~ 843 (966)
+..++..|...++++....+||++++|+++|+.+|++-+.
T Consensus 832 ~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~il 871 (978)
T KOG1993|consen 832 IAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDIL 871 (978)
T ss_pred HHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHH
Confidence 4478999999999999999999999999999999876654
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-56 Score=481.22 Aligned_cols=729 Identities=18% Similarity=0.270 Sum_probs=574.7
Q ss_pred CHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc-----------------------HHHHHHHHhhhccccccccccCC
Q 046316 11 DQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP-----------------------AAVLLKHFIKKHWQEGEESFELP 67 (966)
Q Consensus 11 ~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p-----------------------A~i~LKn~I~~~W~~~~~~~~~~ 67 (966)
-++++.++|..++|||+++|+.+..+|.++...| |+++|||.|+.||.
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~--------- 81 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYN--------- 81 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhcccccccc---------
Confidence 3788999999999999999999999999999988 88999999999998
Q ss_pred CCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc-
Q 046316 68 AVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL- 146 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l- 146 (966)
.++.+.+.+||+.+++++.++++.||...+.+|++|+...+-..||+++|.|.++|.++ +.+...||+.+|..||+|.
T Consensus 82 ~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa 160 (885)
T KOG2023|consen 82 SIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSP-DYNTCEGAFGALQKICEDSA 160 (885)
T ss_pred CCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhH
Confidence 56779999999999999999999999999999999999999999999999999999985 8899999999999999974
Q ss_pred ---cccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcC
Q 046316 147 ---DDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEH 223 (966)
Q Consensus 147 ---~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~ 223 (966)
+++.......-++|.+++.++++ ++.+|+.|++..+..+- + ..+.+.-.+..+++.+.++-.
T Consensus 161 ~~lds~~~~rpl~~mipkfl~f~~h~---spkiRs~A~~cvNq~i~----~-------~~qal~~~iD~Fle~lFalan- 225 (885)
T KOG2023|consen 161 QFLDSDVLTRPLNIMIPKFLQFFKHP---SPKIRSHAVGCVNQFII----I-------QTQALYVHIDKFLEILFALAN- 225 (885)
T ss_pred HHHhhhcccCchHHhHHHHHHHHhCC---ChhHHHHHHhhhhheee----c-------CcHHHHHHHHHHHHHHHHHcc-
Confidence 33444556678899999999876 57899988886555432 1 123344566666666666542
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHH
Q 046316 224 PVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDS 303 (966)
Q Consensus 224 ~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~ 303 (966)
| ++-.+|+.+++.|..+.+..|..+.||+..+++ |+..... |.| ++
T Consensus 226 -----D-~~~eVRk~vC~alv~Llevr~dkl~phl~~Ive------------yML~~tq----------d~d------E~ 271 (885)
T KOG2023|consen 226 -----D-EDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVE------------YMLQRTQ----------DVD------EN 271 (885)
T ss_pred -----C-CCHHHHHHHHHHHHHHHHhcHHhcccchHHHHH------------HHHHHcc----------Ccc------hh
Confidence 2 233699999999999999999999999998887 4222221 222 57
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhh-CHHHHhh-----------------------
Q 046316 304 FVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSI-DANQFLA----------------------- 359 (966)
Q Consensus 304 l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~-Dp~~fv~----------------------- 359 (966)
+..++.|||.++++.+-.+..+.|++++++..++.-|..+++|+-+-.+ +-.+++.
T Consensus 272 VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~ 351 (885)
T KOG2023|consen 272 VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDAD 351 (885)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccc
Confidence 8999999999999999888889999999999999999999998877662 2222221
Q ss_pred cc------cC--C---ccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhH
Q 046316 360 DE------DE--S---TYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLS 428 (966)
Q Consensus 360 de------~d--~---~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~ 428 (966)
+| +| | .|++|.|++-.|+.|+..|+++.++.+++++++.+.+ ..|+.|||+.+|+|+++
T Consensus 352 ~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~----------~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 352 DEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS----------EEWKVREAGVLALGAIA 421 (885)
T ss_pred cccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc----------chhhhhhhhHHHHHHHH
Confidence 01 11 1 2999999999999999999999999999999998864 36999999999999999
Q ss_pred HHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC----hhHHHHHHHHHHhhhcCCCCCc
Q 046316 429 EQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS----DGVLEHFLSAAITTIAMDVPPP 504 (966)
Q Consensus 429 ~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~----~~~~~~~l~~~~~~L~~~~~~~ 504 (966)
+++.+..- +. +.. +--++.+.+. +..|.+|+.+||++|||+.+.- .+++.++++.+++.+- |++..
T Consensus 422 EGcM~g~~----p~-Lpe-Lip~l~~~L~---DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll-D~NK~ 491 (885)
T KOG2023|consen 422 EGCMQGFV----PH-LPE-LIPFLLSLLD---DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL-DSNKK 491 (885)
T ss_pred HHHhhhcc----cc-hHH-HHHHHHHHhc---cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh-cccHH
Confidence 99864321 21 222 2223334454 7899999999999999999852 2677777888877776 66889
Q ss_pred EehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChh---hHHHHHHHHHHHHhhcchhhcccccchHHHHHHHH
Q 046316 505 VKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDE---TLHLVLETLQAAIKAGFLTASMEPMISPLILNIWA 581 (966)
Q Consensus 505 Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d---~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~ 581 (966)
|+.+||+|+..|-+.. .+.+.||+..|++.|...+..+... .+..++.|+.+.+|..-..+.|.+.++|.+++.|.
T Consensus 492 VQEAAcsAfAtleE~A-~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~ 570 (885)
T KOG2023|consen 492 VQEAACSAFATLEEEA-GEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWE 570 (885)
T ss_pred HHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHH
Confidence 9999999999998774 4678999999999999999888765 56777888888887654556666789999999998
Q ss_pred hhcCChhHHHHHHHHHHHHHcC-CCcH----HHHHHhhhcchHhhhcC------CCC---CCchhhHHHHHHHHHHhhcC
Q 046316 582 LHVSDPFISIDAIEVLEAIKCS-PGCI----HQLASRILPYVGPILNN------PQQ---QPDGLVAGSLDLLTMLLKSA 647 (966)
Q Consensus 582 ~~~~d~~~~~~~~~~l~~l~~~-~~~~----~~l~~~~lP~l~~~l~~------~~~---~~~~~~~~al~ll~~l~~~~ 647 (966)
.-.++.--..-..+||++++.. ...| .+..++++-.+.++++. +.+ ...+++-.+||+++.+.++.
T Consensus 571 ~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegL 650 (885)
T KOG2023|consen 571 LLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGL 650 (885)
T ss_pred hcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHh
Confidence 7644332334567899888843 2222 33556677666655431 111 12367778999999999998
Q ss_pred ChhHHHHHHH-HHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCcccc
Q 046316 648 STDVVKAAYD-VCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSL 726 (966)
Q Consensus 648 ~~~l~~~~~~-~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~ 726 (966)
++...+.+.. .+...+++|+ ...-++|.|++...|..+.+.+++++. +++...+.++..-|+|+ .-+++.
T Consensus 651 g~~ie~Lva~snl~~lll~C~-~D~~peVRQS~FALLGDltk~c~~~v~-------p~~~~fl~~lg~Nl~~~-~isv~n 721 (885)
T KOG2023|consen 651 GSHIEPLVAQSNLLDLLLQCL-QDEVPEVRQSAFALLGDLTKACFEHVI-------PNLADFLPILGANLNPE-NISVCN 721 (885)
T ss_pred hhchHHHhhhccHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHhhcCChh-hchHHH
Confidence 8666555432 2334444444 356799999999999999999887763 57788888888767765 335666
Q ss_pred chHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHH
Q 046316 727 FVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQI-AGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFV 805 (966)
Q Consensus 727 ~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~~-~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~ 805 (966)
++++-+..+..+++....+++..++..++..+.+..+ .++..|....++||-++ +|+.+ .+.++
T Consensus 722 NA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~---~Pe~v------------Ap~l~ 786 (885)
T KOG2023|consen 722 NAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYI---CPEEV------------APHLD 786 (885)
T ss_pred HHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhcc---CHHhc------------chhHH
Confidence 7777777777788877788999999988888887666 56778999999999999 89853 35788
Q ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHccCCcccc
Q 046316 806 YVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELA 843 (966)
Q Consensus 806 ~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~~~d~~l~ 843 (966)
.+++.||.+..+++...+|.-.+.|+|+++..|+.++.
T Consensus 787 ~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv 824 (885)
T KOG2023|consen 787 SFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV 824 (885)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhh
Confidence 89999999999999999999999999999999987765
No 7
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.1e-53 Score=477.00 Aligned_cols=777 Identities=18% Similarity=0.213 Sum_probs=558.3
Q ss_pred HHHHHHHHhcCCCHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhccccccccccCCCCCh
Q 046316 14 WLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGEESFELPAVSS 71 (966)
Q Consensus 14 ~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~~~~~~~~i~~ 71 (966)
..+..+..+.|+|+.++|.||++|++|++++ |+|+|||+|++||+..... .+..
T Consensus 5 ~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~----~i~p 80 (947)
T COG5657 5 PVVKQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGN----SILP 80 (947)
T ss_pred HHHHHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhccc----CCCC
Confidence 3556678889999999999999999999997 8899999999999965433 5777
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcc----
Q 046316 72 EEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLD---- 147 (966)
Q Consensus 72 ~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~---- 147 (966)
+++..||..++.++.+++..+.-|.|+|++.||+.|||++||+|+|.|.+.+++ +|.....+.|.+++.+++.+.
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~-~D~~tn~~~L~~~h~Ifk~~r~l~R 159 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSE-KDMVTNENSLRVLHHIFKRLRRLFR 159 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcc-cchHHHHHHHHHHHHHHHHHhhhhc
Confidence 777899999999998888888889999999999999999999999999999998 588899999999999999753
Q ss_pred -ccchhhhhhhHHHHHHHHhcCCC-CCcHH--HHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcC
Q 046316 148 -DAIVPKLVPVLFPVLHTIVSFPE-SYDRY--VRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEH 223 (966)
Q Consensus 148 -~~~~~~i~~~l~p~L~~i~~~~~-~~~~~--~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~ 223 (966)
++.|..+++++.+.+.+++.+.- ..+.. ....-++.|+.|+..+.......-++.++|++++++.||..|..+++.
T Consensus 160 sd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~ 239 (947)
T COG5657 160 SDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSY 239 (947)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 36789999999999999776432 11111 234577888888887777666555568899999999999999999985
Q ss_pred CCCC--C----CCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCC
Q 046316 224 PVQP--E----DPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGA 297 (966)
Q Consensus 224 ~~~~--~----d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~ 297 (966)
..+. . +-.-+++|..++.+++.+..+||..++++.-.+++.+|..++++.+.|
T Consensus 240 ~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~--------------------- 298 (947)
T COG5657 240 SNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPY--------------------- 298 (947)
T ss_pred cchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCcc---------------------
Confidence 4321 0 112358999999999999999999999988899999999998744333
Q ss_pred ccchHHHHHHHHHHHHHHhc--ChhHHHHHHH----hHHHHHHHHH-HhhcCCHHHHHHHhhCHHHHhhcccC-C-ccch
Q 046316 298 EKSLDSFVIQLFEFLLTIVG--SAKLVKVIAS----NVRELVYHTI-AFLQMTEQQIHIWSIDANQFLADEDE-S-TYSC 368 (966)
Q Consensus 298 ~~~~~~l~~~~~efl~~~~~--~~~~~~~l~~----~l~~li~~li-~~~~lt~ed~e~w~~Dp~~fv~de~d-~-~~s~ 368 (966)
.++-++...+.++....+ .+++.+.+.+ .+..++..++ |++++.++|+|.|++||.+|+++... + .+.+
T Consensus 299 --~~d~Lv~k~l~~l~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~v 376 (947)
T COG5657 299 --IRDYLVSKSLTVLINVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNV 376 (947)
T ss_pred --ccchhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhh
Confidence 135677788888888887 4555555543 6788899998 99999999999999999999994433 2 3789
Q ss_pred hhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHH
Q 046316 369 RVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELL 448 (966)
Q Consensus 369 R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l 448 (966)
|.++.+.++.+.+.+++-.+..+...+.+..+.. + .....+.+.|++...|...+.+.. -+++..|+
T Consensus 377 r~~~~~~l~~~f~~~~~i~~~~~~~~ie~~~t~P----~--~~d~~~~~~a~~a~~g~g~~av~~-------~~~~v~~~ 443 (947)
T COG5657 377 RPCIENELKDLFDVFGRIAVGHELTVIESEATTP----N--ILDEARQLFAAYASFGLGVEAVNR-------MVDFVKFL 443 (947)
T ss_pred hHHHHHHHHHHHHHHhhHhHHHHHHHHHHHhcCc----h--HHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHH
Confidence 9999999999999999666667777776655432 0 122467788888777754444322 25678889
Q ss_pred HHHHhhhhcCC-CCCCh-hHHHHHHHHHHHhhhhcChh------HHHHHHHHHHhhhc-CCCCCcEehhHHHHHHhhccc
Q 046316 449 EQMITEDIGTG-VHQYP-FLYARIFASVARFSSAISDG------VLEHFLSAAITTIA-MDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 449 ~~~i~~~l~~~-~~~~~-~Lr~Ra~~~l~~f~~~~~~~------~~~~~l~~~~~~L~-~~~~~~Vr~~A~~al~~~~~~ 519 (966)
.+.+.|++.+. .-.|+ ++|+|+-.++..+......+ ...++|...+.... ...-..+|-++.+.+..++-.
T Consensus 444 ~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~ 523 (947)
T COG5657 444 GSIIYPDLLSPNEIIHLRILRSRIAYILTFRNQLDSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFS 523 (947)
T ss_pred HHhcCccccCcccCceeEEehhccchheechhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Confidence 99999988731 12333 44555555555443332111 22233333332211 011233444444444444322
Q ss_pred CCCCCccccHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHH
Q 046316 520 ANKGNFQPQMMGLFSSLADLLHQARD-ETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVL 597 (966)
Q Consensus 520 ~~~~~l~p~l~~il~~L~~ll~~~~~-d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l 597 (966)
. ...-+-+.+++-.+++++...+. +....+++++..++..++ .++++.+++.+++.++|..+.+||.....+...+
T Consensus 524 ~--~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~f 601 (947)
T COG5657 524 V--CSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTF 601 (947)
T ss_pred c--ccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHH
Confidence 1 13334445555556666655544 788999999999999988 6667888999999999999988887665555566
Q ss_pred HHHHcCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhc-cCchHHh
Q 046316 598 EAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQ-SEDHSEM 676 (966)
Q Consensus 598 ~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~-s~d~~~l 676 (966)
+.+......+...++..+|.+...+.+.. ..-+-+++.++|+.++.... .++..+....+|++..++.+ +.+.+++
T Consensus 602 e~I~al~~~~~~~~~~~ip~l~~~l~p~~--~~l~~ed~~El~~~~lq~~s-~l~e~f~~~~lp~v~~~l~q~~~~t~ll 678 (947)
T COG5657 602 EDIGALVFLKSGMCEITIPTLVLALVPEF--PVLLSEDATELWSYVLQLLS-ILPEHFSGDVLPSVVKILRQPSLATELL 678 (947)
T ss_pred HHHHHHHHhhhcccccchHHHHHhhCccc--hhhhhhhHHHHHHHHHHHHh-hcchhhcCCcCchHHHHHhcccCchHHH
Confidence 65554434555667778888887776542 12234678888888887643 44444334457777877764 5677787
Q ss_pred hhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHH
Q 046316 677 QNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVR 756 (966)
Q Consensus 677 q~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~ 756 (966)
+.-.+.++.|.......+....--+.++.+.++.++.++++.+..+..+.-+|..+..+.... -.++++..|...+++
T Consensus 679 ~~~~~I~~~~~Ll~~~~~~~~~if~~s~~~~vL~i~~~ll~~e~~~~~~f~~~~~v~~l~~~~--i~~~~v~~i~~lll~ 756 (947)
T COG5657 679 PTKLEILKSYRLLDNPILTTGYIFKSSGFQPVLGILQYLLGSEPHDALCFLNLTVVETLYLEN--IYEPYVNLIFVLLLS 756 (947)
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHhcchHHHHHHhhHHHHHHhHHHH--HHhhcHHHHHHHHHH
Confidence 777777776655544333221001136788999999999987777666655665555554331 147899999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhhcC--CCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHH
Q 046316 757 RLQSAQIAGLRSSLLLIFARLVHMSA--PNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALL 834 (966)
Q Consensus 757 rL~~~~~~~~~~~li~vfa~l~~~~~--~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~L 834 (966)
|+.+++++.++..++.+|++....+. ..++.++.+..++. ..-...++..|.-.+..+....+||+.++|++++
T Consensus 757 rl~ns~~~r~v~~~i~~fs~v~~k~~~t~~~dnlI~ki~q~k----~i~i~~l~g~~Il~~~~i~~~~drKi~~ig~snl 832 (947)
T COG5657 757 RLKNSKTERFVIKIIHVFSLVSFKDSLTVGCDNLISKINQTK----NILIVQLYGNWILGFDEIHDSKDRKIHLIGLSNL 832 (947)
T ss_pred HhhcccchHHHHHhheeeEEechhhccccCChHHHHHHHHHH----HHHHHHHHhceeeccchhccHHHHHHHHHhHHhh
Confidence 99999999999999999998755400 01344555553211 1234567888988888899999999999999999
Q ss_pred HccCCccc
Q 046316 835 LSTRHPEL 842 (966)
Q Consensus 835 l~~~d~~l 842 (966)
+.+++|.+
T Consensus 833 lrt~~~~v 840 (947)
T COG5657 833 LRTLHPEV 840 (947)
T ss_pred hhhcCchh
Confidence 98765543
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-43 Score=410.68 Aligned_cols=578 Identities=20% Similarity=0.280 Sum_probs=441.5
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccC-c--------------------HHHHHHHHhhhccccccccccCCC
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQ-P--------------------AAVLLKHFIKKHWQEGEESFELPA 68 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~-p--------------------A~i~LKn~I~~~W~~~~~~~~~~~ 68 (966)
|+.+.+.+++++.+||||++|++||++|+..... | |+|.+|+.+.++|+ .
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~---------~ 71 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWS---------R 71 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh---------c
Confidence 4677899999999999999999999999955554 3 99999999999998 7
Q ss_pred CChHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcc
Q 046316 69 VSSEEKEVIRKLLLSSL-DDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLD 147 (966)
Q Consensus 69 i~~~~K~~IR~~Ll~~L-~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~ 147 (966)
++++.|+.||+.||.++ .++.+.||+.+|.+|+.||+.+.|++||+|++.|+++.+|+ |+..++.|+++|..+...++
T Consensus 72 l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~-~~~~rE~al~il~s~~~~~~ 150 (1075)
T KOG2171|consen 72 LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSP-NPSLRESALLILSSLPETFG 150 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCC-CcchhHHHHHHHHhhhhhhc
Confidence 99999999999999995 78889999999999999999999999999999999999996 88999999999999998876
Q ss_pred ccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCC
Q 046316 148 DAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQP 227 (966)
Q Consensus 148 ~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~ 227 (966)
. ++.+..+.+.+.+.+.++++. +. +|..|++.+.+.+..+. ..+ +.-..+.+.+|..+..+...++.
T Consensus 151 ~-~~~~~~~~l~~lf~q~~~d~s--~~-vr~~a~rA~~a~~~~~~----~~~-~~~~~~~~llP~~l~vl~~~i~~---- 217 (1075)
T KOG2171|consen 151 N-TLQPHLDDLLRLFSQTMTDPS--SP-VRVAAVRALGAFAEYLE----NNK-SEVDKFRDLLPSLLNVLQEVIQD---- 217 (1075)
T ss_pred c-ccchhHHHHHHHHHHhccCCc--ch-HHHHHHHHHHHHHHHhc----cch-HHHHHHHHHhHHHHHHhHhhhhc----
Confidence 5 456667888888888887764 23 99999998888776543 122 23455667888777777777664
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHH
Q 046316 228 EDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQ 307 (966)
Q Consensus 228 ~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~ 307 (966)
++-..-+.++++|+.+....|+.+++++.++++...+...+ .. +. +..+..
T Consensus 218 ---~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n-------~~------------------l~-~~~R~~ 268 (1075)
T KOG2171|consen 218 ---GDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKN-------KE------------------LE-NSIRHL 268 (1075)
T ss_pred ---cchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc-------cc------------------cc-HHHHHH
Confidence 22345679999999999999999999998888755443322 11 11 678899
Q ss_pred HHHHHHHHhcC-hhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccC-CccchhhHHHHHHHHHHHHhCh
Q 046316 308 LFEFLLTIVGS-AKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDE-STYSCRVSGALLLEEVVSYCGR 385 (966)
Q Consensus 308 ~~efl~~~~~~-~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d-~~~s~R~aa~~lL~~L~~~~~~ 385 (966)
+++|+.++.+. |.+.+...+...+++..++..|+=-++| +.|.+. .++++ +..++-..|...|+.++.+.|.
T Consensus 269 ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D-~ew~~~-----d~~ded~~~~~~~~A~~~lDrlA~~L~g 342 (1075)
T KOG2171|consen 269 ALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD-DEWSNE-----DDLDEDDEETPYRAAEQALDRLALHLGG 342 (1075)
T ss_pred HHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc-hhhccc-----cccccccccCcHHHHHHHHHHHHhcCCh
Confidence 99999999875 3333333445555555555544432233 455431 01222 3577888999999999999984
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCCh
Q 046316 386 -EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYP 464 (966)
Q Consensus 386 -~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 464 (966)
.+++++++++.+++++ .+|+.|.|+|+|++++++++.+.... .+++.+. +|++.++ ++||
T Consensus 343 ~~v~p~~~~~l~~~l~S----------~~w~~R~AaL~Als~i~EGc~~~m~~-----~l~~Il~-~Vl~~l~---Dphp 403 (1075)
T KOG2171|consen 343 KQVLPPLFEALEAMLQS----------TEWKERHAALLALSVIAEGCSDVMIG-----NLPKILP-IVLNGLN---DPHP 403 (1075)
T ss_pred hhehHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHcccHHHHHH-----HHHHHHH-HHHhhcC---CCCH
Confidence 6689999999998875 25999999999999999998766541 3555444 6667777 9999
Q ss_pred hHHHHHHHHHHHhhhhcChhHHHHH----HHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHH
Q 046316 465 FLYARIFASVARFSSAISDGVLEHF----LSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLL 540 (966)
Q Consensus 465 ~Lr~Ra~~~l~~f~~~~~~~~~~~~----l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll 540 (966)
.+|..||-++|++++.+.++..+.+ ..+++..+.+..+.+|+.+|+.|+-+|.+.+.++.+.||++.+|+..+.++
T Consensus 404 rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L 483 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLL 483 (1075)
T ss_pred HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877554443 334445555455678999999999999999889999999999999766666
Q ss_pred hhcCh-hhHHHHHHHHHHHHhhcc--hhhcccccchHHHHHHHHhhcCC---hhHHHHHHHHHHHHHcC--CCcHHHHHH
Q 046316 541 HQARD-ETLHLVLETLQAAIKAGF--LTASMEPMISPLILNIWALHVSD---PFISIDAIEVLEAIKCS--PGCIHQLAS 612 (966)
Q Consensus 541 ~~~~~-d~l~~~le~l~~~i~~~~--~~~~~~~~l~p~~l~l~~~~~~d---~~~~~~~~~~l~~l~~~--~~~~~~l~~ 612 (966)
.+... .....++-+|..+-..-. |.+ |.+.++|.+.++ .++.+| -.+|..+++|+..+... .+.|.++-+
T Consensus 484 ~~~~~~~v~e~vvtaIasvA~AA~~~F~p-Y~d~~Mp~L~~~-L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~ 561 (1075)
T KOG2171|consen 484 LQSSKPYVQEQAVTAIASVADAAQEKFIP-YFDRLMPLLKNF-LQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE 561 (1075)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhhhhHh-HHHHHHHHHHHH-HhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence 55543 566666666666543322 444 345788999888 444442 25788999999988843 457777777
Q ss_pred hhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHH
Q 046316 613 RILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRII 667 (966)
Q Consensus 613 ~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l 667 (966)
.++-.+.....+.....++..+..+..|+.+.|-.++.|.+. ...++|+++.-.
T Consensus 562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~-L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPF-LPVVMPPLLKTA 615 (1075)
T ss_pred HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhH-HHHHhHHHHHhh
Confidence 777777666544444556888999999999999988888774 566777777554
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-38 Score=345.59 Aligned_cols=655 Identities=18% Similarity=0.216 Sum_probs=457.3
Q ss_pred HHHHHHHHhcCCCHHHhHHHHHHHHhhccCc------------------------HHHHHHHHhhhccccccccc--cCC
Q 046316 14 WLLNCLSATLDPNQEVRSFAEVSLNQASLQP------------------------AAVLLKHFIKKHWQEGEESF--ELP 67 (966)
Q Consensus 14 ~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p------------------------A~i~LKn~I~~~W~~~~~~~--~~~ 67 (966)
++.++|..++|||+++|+.||.+|++++.+. |++.|||.+...=......| +|.
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 4678899999999999999999999998863 88999999976544333333 477
Q ss_pred CCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCC-CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc
Q 046316 68 AVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWP-EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL 146 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P-~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l 146 (966)
.++.+.|++||.++++.|+.+.+..++.+|.||+.||..+-| ..||+|++.++....+.+......++|.++..+|+++
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i 161 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI 161 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC
Confidence 899999999999999999999999999999999999999999 5899999999999987533346789999999999999
Q ss_pred cccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCC
Q 046316 147 DDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQ 226 (966)
Q Consensus 147 ~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~ 226 (966)
+.+.+..-...++..+.+-....+ .+..+|-.|++.++.|+.+........ .++ +.+.++...-
T Consensus 162 ~pevl~~~sN~iLtaIv~gmrk~e-~s~~vRLaa~~aL~nsLef~~~nF~~E-~er------------n~iMqvvcEa-- 225 (859)
T KOG1241|consen 162 DPEVLEQQSNDILTAIVQGMRKEE-TSAAVRLAALNALYNSLEFTKANFNNE-MER------------NYIMQVVCEA-- 225 (859)
T ss_pred CHHHHHHHHhHHHHHHHhhccccC-CchhHHHHHHHHHHHHHHHHHHhhccH-hhh------------ceeeeeeeec--
Confidence 988777777888888888777655 577899999999999988754332211 111 1122222211
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHH-HHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHH
Q 046316 227 PEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLV-VVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFV 305 (966)
Q Consensus 227 ~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~ 305 (966)
....+..++..++.||.+|.+-|.+++.+||.+ ++..+...+ -+ + -+++.
T Consensus 226 -tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-----------ks------------~-----~deVa 276 (859)
T KOG1241|consen 226 -TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-----------KS------------D-----NDEVA 276 (859)
T ss_pred -ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cC------------C-----cHHHH
Confidence 122456799999999999999999999999875 444322211 11 1 17899
Q ss_pred HHHHHHHHHHhcCh-hH----HH------------HHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccch
Q 046316 306 IQLFEFLLTIVGSA-KL----VK------------VIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSC 368 (966)
Q Consensus 306 ~~~~efl~~~~~~~-~~----~~------------~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~ 368 (966)
.+.+|||+++++.. .. .. .-+..++.+++.++..++=.++ +.|||.||+
T Consensus 277 lQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde--------------~~d~DdWnp 342 (859)
T KOG1241|consen 277 LQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE--------------DDDDDDWNP 342 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC--------------CcccccCcH
Confidence 99999999886432 10 11 1122233444444433321111 233467999
Q ss_pred hhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHH
Q 046316 369 RVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELL 448 (966)
Q Consensus 369 R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l 448 (966)
-.||+.+|.-+++..|++.++++++||.+.+++ .+||.|||+.+++|++-++-....- .++ +.+-+
T Consensus 343 ~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~----------pdwr~reaavmAFGSIl~gp~~~~L---t~i-V~qal 408 (859)
T KOG1241|consen 343 AKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN----------PDWRNREAAVMAFGSILEGPEPDKL---TPI-VIQAL 408 (859)
T ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC----------cchhhhhHHHHHHHhhhcCCchhhh---hHH-Hhhhh
Confidence 999999999999999999999999999998874 3699999999999999764211110 111 12222
Q ss_pred HHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC-----hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC---
Q 046316 449 EQMITEDIGTGVHQYPFLYARIFASVARFSSAIS-----DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA--- 520 (966)
Q Consensus 449 ~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~-----~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~--- 520 (966)
.. +...+. ++.-++|..+.|++||.++.++ .++....+...+.+|. | .+.|-..+|.|+-+|.+..
T Consensus 409 p~-ii~lm~---D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-D-ePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 409 PS-IINLMS---DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-D-EPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred HH-HHHHhc---CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-h-CchHHHHHHHHHHHHHHHHHHh
Confidence 22 222333 7888999889999999999864 3677788888888886 3 5677778999999998742
Q ss_pred -C----CCCccccHHHHHHHHHHHHhhcC-h--hhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcC------
Q 046316 521 -N----KGNFQPQMMGLFSSLADLLHQAR-D--ETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVS------ 585 (966)
Q Consensus 521 -~----~~~l~p~l~~il~~L~~ll~~~~-~--d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~------ 585 (966)
. .+...|+.+.|+..|++.-+..+ . .....+-|+|.++|+..+ ........+.++++.-..+...
T Consensus 483 ~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~ 562 (859)
T KOG1241|consen 483 AVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSL 562 (859)
T ss_pred ccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 1 12455889999999998887754 2 356778899999998765 3333333455555543222222
Q ss_pred -Chh----HHHHHHHHHHHHH-cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHH
Q 046316 586 -DPF----ISIDAIEVLEAIK-CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVC 659 (966)
Q Consensus 586 -d~~----~~~~~~~~l~~l~-~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~ 659 (966)
|.. +-.....+|..+. ..+....+..+.++-.+..+++.... ....++++--++.++.+.++.|... +..+
T Consensus 563 ~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s--~~v~e~a~laV~tl~~~Lg~~F~ky-m~~f 639 (859)
T KOG1241|consen 563 ADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRS--AVVHEEAFLAVSTLAESLGKGFAKY-MPAF 639 (859)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCcc--ccchHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 111 1222334555554 44567888889999999999987321 2345677777888888888788775 5566
Q ss_pred hHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhc-CCCCCCccccchHHHHHHHHHh
Q 046316 660 FDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLL-NPDLESSGSLFVGSYILQLILH 738 (966)
Q Consensus 660 fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL-~~~~~~~~~~~vg~Lv~~li~~ 738 (966)
.|.+..-+.+..|..++-.+...+..+-+.-...| .+|.+.+++.+-..| +|.+.-+-.-.+-.....|...
T Consensus 640 ~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i-------~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 640 KPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDI-------LPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 67777777677888888888888887776644444 367778888887777 4555544433343444444444
Q ss_pred CChhhhHhHHHHHHHHHHHHHHh
Q 046316 739 LPSQMAQHIRDLVAALVRRLQSA 761 (966)
Q Consensus 739 ~~~~l~~~l~~iL~a~~~rL~~~ 761 (966)
.|.++.+|+ +.++..|+++
T Consensus 713 Ig~~F~~Yl----~~vm~llq~a 731 (859)
T KOG1241|consen 713 IGADFEPYL----EMVMPLLQQA 731 (859)
T ss_pred HHHhHHHHH----HHHHHHHHHH
Confidence 444444444 4444445543
No 10
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=2.7e-35 Score=323.66 Aligned_cols=297 Identities=16% Similarity=0.265 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCC---CCC----hhhHHHHHHHHHHHHHHhc
Q 046316 178 TKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPE---DPD----DWGVKMEVLKCLNQFIQNF 250 (966)
Q Consensus 178 ~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~---d~~----~~~lk~~~~~~L~~l~~~f 250 (966)
..++|||+++.. .+.|+++.+++..||+.|..+|..+.|.. |.+ -+++|+|++++++++.++|
T Consensus 58 ~lilKiF~sL~~----------~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY 127 (370)
T PF08506_consen 58 KLILKIFYSLNC----------QDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKY 127 (370)
T ss_dssp HHHHHHHHHHHS----------SS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcc----------CcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 456777776542 25889999999999999999999876521 111 2699999999999999999
Q ss_pred chhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHH--HHh
Q 046316 251 PSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVI--ASN 328 (966)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l--~~~ 328 (966)
.+.|.++++.|+..+|+++.+.... ...+.++..+++||+++++.+..+..+ +++
T Consensus 128 ~e~f~~~l~~fv~~vw~lL~~~~~~-----------------------~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~ 184 (370)
T PF08506_consen 128 EEEFEPFLPTFVQAVWNLLTKISQQ-----------------------PKYDILVSKALQFLSSVAESPHHKNLFENKPH 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--SS-----------------------GGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-----------------------ccccHHHHHHHHHHHHHHcchhHHHHhCCHHH
Confidence 9999999999999999987652111 123789999999999999877666555 689
Q ss_pred HHHHHHHHH-HhhcCCHHHHHHHhhCHHHHhhcccC--CccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHH
Q 046316 329 VRELVYHTI-AFLQMTEQQIHIWSIDANQFLADEDE--STYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQE 405 (966)
Q Consensus 329 l~~li~~li-~~~~lt~ed~e~w~~Dp~~fv~de~d--~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~ 405 (966)
+.+|+..+| |+|+++++|+|+|++||.|||+.+.| |.+|+|.||.+|+..|+++|++.+.+.+..++++.++++.+.
T Consensus 185 L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~ 264 (370)
T PF08506_consen 185 LQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN 264 (370)
T ss_dssp HHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC
Confidence 999999998 99999999999999999999986544 579999999999999999999999999999999999998764
Q ss_pred HhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCC----ccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhc
Q 046316 406 KAAGSTVWWRMREATLFALAFLSEQLLEAEVSGL----TSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAI 481 (966)
Q Consensus 406 ~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~----~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~ 481 (966)
+ ..+||.||+|++++|+++..... ...|. ..+|+.+|+.++|.|+++...+.+|+||+||||++..|...+
T Consensus 265 ~----~~~w~~KD~Al~Li~ala~k~~t-~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l 339 (370)
T PF08506_consen 265 P----SNNWRSKDGALYLIGALASKGST-TKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQL 339 (370)
T ss_dssp T----TT-HHHHHHHHHHHHHHHBSS---BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS
T ss_pred C----cccHHHHHHHHHHHHHHHhhhcc-ccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhC
Confidence 3 24699999999999999865322 12232 236899999999999998445789999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHH
Q 046316 482 SDGVLEHFLSAAITTIAMDVPPPVKVGACRAL 513 (966)
Q Consensus 482 ~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al 513 (966)
+++.+..+++.++++|.++ +.+|+..|+.|+
T Consensus 340 ~~~~l~~~~~~l~~~L~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 340 PKEQLLQIFPLLVNHLQSS-SYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCC-CcchhhhhhhhC
Confidence 9999999999999999854 788999999875
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.5e-31 Score=282.72 Aligned_cols=646 Identities=16% Similarity=0.186 Sum_probs=405.6
Q ss_pred HHHHh--cCCCHHHhHHHHHHHHhhccCc------------------------HHHHHHHHhhhccccccccc--cCCCC
Q 046316 18 CLSAT--LDPNQEVRSFAEVSLNQASLQP------------------------AAVLLKHFIKKHWQEGEESF--ELPAV 69 (966)
Q Consensus 18 ~L~~~--ls~d~~~R~~AE~~L~~~~~~p------------------------A~i~LKn~I~~~W~~~~~~~--~~~~i 69 (966)
||... +|||+++|..||.||+++.... |++.|||-+..+=......| +|..+
T Consensus 8 ~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~ 87 (858)
T COG5215 8 CLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGM 87 (858)
T ss_pred HHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccC
Confidence 44444 9999999999999999998853 89999999976644332222 46679
Q ss_pred ChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCC-CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc
Q 046316 70 SSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPE-DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD 148 (966)
Q Consensus 70 ~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~-~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~ 148 (966)
+.|.|++||...+++|.++.+.+.+.+|..++.||+.+.|+ .||+|+..++.......-.+.+..+|.++...|+..+.
T Consensus 88 ~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P 167 (858)
T COG5215 88 RHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP 167 (858)
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH
Confidence 99999999999999999999999999999999999999995 89999999999987654445677899999999987766
Q ss_pred cchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCC
Q 046316 149 AIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPE 228 (966)
Q Consensus 149 ~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~ 228 (966)
+.+-.....++-.+..-..+.+ .+..+|..|++.+...+.++...... ..++ +-+|+..+.+-+
T Consensus 168 e~li~~sN~il~aiv~ga~k~e-t~~avRLaaL~aL~dsl~fv~~nf~~-E~er--------Ny~mqvvceatq------ 231 (858)
T COG5215 168 EDLIQMSNVILFAIVMGALKNE-TTSAVRLAALKALMDSLMFVQGNFCY-EEER--------NYFMQVVCEATQ------ 231 (858)
T ss_pred HHHHHHhhHHHHHHHHhhcccC-chHHHHHHHHHHHHHHHHHHHHhhcc-hhhh--------chhheeeehhcc------
Confidence 5444444555555544444443 46678888999877644443332211 1112 122333333322
Q ss_pred CCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHH
Q 046316 229 DPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQL 308 (966)
Q Consensus 229 d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~ 308 (966)
..+..+...++-||+++..-|.+.+.+|+..-+-....- .+-+ .-+.+..++
T Consensus 232 -~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~-----------~mks----------------~nd~va~qa 283 (858)
T COG5215 232 -GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGR-----------FMKS----------------QNDEVAIQA 283 (858)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcC----------------cchHHHHHH
Confidence 234578999999999999999999888876443221111 1110 116899999
Q ss_pred HHHHHHHhcChhHHHHH-H--------------HhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHH
Q 046316 309 FEFLLTIVGSAKLVKVI-A--------------SNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGA 373 (966)
Q Consensus 309 ~efl~~~~~~~~~~~~l-~--------------~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~ 373 (966)
+|||+++++.+.-...- + ..+.++++.++.+++=..+ |-+||.|++..+|.
T Consensus 284 vEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e--------------d~~~DdWn~smaA~ 349 (858)
T COG5215 284 VEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE--------------DYYGDDWNPSMAAS 349 (858)
T ss_pred HHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC--------------CccccccchhhhHH
Confidence 99999987543111110 0 1133444444444332111 23456799999999
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHh
Q 046316 374 LLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMIT 453 (966)
Q Consensus 374 ~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~ 453 (966)
.+|.-.++..|+..+.+++.|+.+.+++ .+|+.|||+.+|+|++.++=.+. -+-.++.+.++
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~----------~~w~nreaavmAfGSvm~gp~~~--------~lT~~V~qalp 411 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRS----------ESWANREAAVMAFGSVMHGPCED--------CLTKIVPQALP 411 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccC----------chhhhHHHHHHHhhhhhcCccHH--------HHHhhHHhhhH
Confidence 9999999999999999999999998864 36999999999999997641111 11122222222
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhhhhc----Ch-hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC------CC
Q 046316 454 EDIGTGVHQYPFLYARIFASVARFSSAI----SD-GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA------NK 522 (966)
Q Consensus 454 ~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~----~~-~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~------~~ 522 (966)
...+...++.-+++.|+.|++|+++.+. +| .++.....+.+-+|. | ++.+-+.+++++.+|+++. ..
T Consensus 412 ~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~-D-~p~~~~ncsw~~~nlv~h~a~a~~~~~ 489 (858)
T COG5215 412 GIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM-D-CPFRSINCSWRKENLVDHIAKAVREVE 489 (858)
T ss_pred HHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh-c-cchHHhhhHHHHHhHHHhhhhhhcccc
Confidence 2222223788999999999999999874 33 344455566666665 3 4455567889999998873 24
Q ss_pred CCccccHHHHHHHHHHHHhhcChh--hHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 046316 523 GNFQPQMMGLFSSLADLLHQARDE--TLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAI 600 (966)
Q Consensus 523 ~~l~p~l~~il~~L~~ll~~~~~d--~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l 600 (966)
+.+.|+-+.|+..|.+--+...+| ......++|...|...+ +.+.|.+..+ ..+ .....
T Consensus 490 S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~------d~V~~~~a~~-~~~-----~~~kl------- 550 (858)
T COG5215 490 SFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP------DAVSDILAGF-YDY-----TSKKL------- 550 (858)
T ss_pred chhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc------hhHHHHHHHH-HHH-----HHHHH-------
Confidence 567888899999999888877665 34555666666654322 1222332222 100 00011
Q ss_pred HcCCCcHHHHHHhhhcchHhhhcCCCCC-CchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhh
Q 046316 601 KCSPGCIHQLASRILPYVGPILNNPQQQ-PDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNA 679 (966)
Q Consensus 601 ~~~~~~~~~l~~~~lP~l~~~l~~~~~~-~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~ 679 (966)
+.++.+..+++...+.. ..++...-+-+++.+++..++..-+ .-++++...++++...+-..+....
T Consensus 551 -----------~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les~~~t~~~~dV 618 (858)
T COG5215 551 -----------DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILESTKPTTAFGDV 618 (858)
T ss_pred -----------HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhccCCchhhhHH
Confidence 12223333333322111 1244556667777777766543322 1223445556665533222222333
Q ss_pred HHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHH
Q 046316 680 TECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQ 759 (966)
Q Consensus 680 ~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~ 759 (966)
.-++.++...-.++|-+ |+..+...+.|-|+ ..+...+..+-+++..+-+.++..+.+|-+.+...+++.|+
T Consensus 619 ~~aIsal~~sl~e~Fe~-------y~~~fiPyl~~aln-~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~ls 690 (858)
T COG5215 619 YTAISALSTSLEERFEQ-------YASKFIPYLTRALN-CTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLS 690 (858)
T ss_pred HHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHhc-chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 33333333322223322 33333333333332 11211222333455555566666677888888999988888
Q ss_pred Hhhh-HHHHHHHHHHHHHHHhh
Q 046316 760 SAQI-AGLRSSLLLIFARLVHM 780 (966)
Q Consensus 760 ~~~~-~~~~~~li~vfa~l~~~ 780 (966)
+..+ ..++...+.||+.+.+.
T Consensus 691 s~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 691 SEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred ChhhccccchHHHHHHHHHHHH
Confidence 7554 77888889999988554
No 12
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.90 E-value=2.6e-22 Score=225.49 Aligned_cols=302 Identities=15% Similarity=0.283 Sum_probs=218.5
Q ss_pred CCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-----hhhcccccchHHHHHHHHhhcCChhHHHHHHHH
Q 046316 522 KGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-----LTASMEPMISPLILNIWALHVSDPFISIDAIEV 596 (966)
Q Consensus 522 ~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-----~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~ 596 (966)
++.++|++.++++.|+.++...+......+|.++..++..-. ++..+.+.++..+-.+ ++++++|.+..-..|+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v-~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEV-SKNPSNPRFNHYLFES 95 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHH-HTS---HHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhCCCCcchhhhHHHH
Confidence 567999999999999999987544334455666666554321 3333344454444344 8899999888877787
Q ss_pred HHHHHc-----CCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCC-hhHHHHHHHHHhHHHHHHHhcc
Q 046316 597 LEAIKC-----SPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAS-TDVVKAAYDVCFDAVIRIILQS 670 (966)
Q Consensus 597 l~~l~~-----~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~-~~l~~~~~~~~fp~l~~~l~~s 670 (966)
+..+.. .|+....+++.++|.+..+|+++.. +++..++++++.+++..+ +++|+. |..+||+++...+-.
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~---EF~PYvfQIla~Lle~~~~~~~p~~-y~~L~~~Ll~p~lWe 171 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ---EFIPYVFQILAQLLELRPSSPLPDA-YKQLFPPLLSPALWE 171 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T---TTHHHHHHHHHHHHHHSS--S--TT-TGGGHHHHTSGGGGG
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCCCCCcHH-HHHHHHHHcCcchhc
Confidence 777762 1446678999999999999999865 456677899999998877 677774 678888888776532
Q ss_pred CchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChh-hhHhHHH
Q 046316 671 EDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQ-MAQHIRD 749 (966)
Q Consensus 671 ~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~-l~~~l~~ 749 (966)
-.+.+......|.+||++++..+.+ .+.++.+++|+.||++.+..|. +...|+.+++++++.. +++|+++
T Consensus 172 -~~gniPalvrLL~a~i~k~~~~i~~-----~~~l~~iLgvFQkLi~sk~~D~---~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 172 -RRGNIPALVRLLQAYIKKDPSFIVA-----NNQLEPILGVFQKLIASKANDH---YGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp -STTTHHHHHHHHHHHHHHHGGG---------S-CHHHHHHHHHHHT-TTCHH---HHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred -cCCCcCcHHHHHHHHHHhCchhhcc-----hhhHHHHHHHHHHHHCCCCcch---HHHHHHHHHHHHCCHHHHHHHHHH
Confidence 2345678888999999999998865 5688999999999998776654 4568999999999986 7999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHH-HHHhcccccccccchhHHHH
Q 046316 750 LVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVM-SEWTKLQGEIQGAYPIKVTT 828 (966)
Q Consensus 750 iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl-~~W~~~~~~~~g~~~~K~~~ 828 (966)
|+..+++||+++|+..+++.++.+++.++.+. +|+.+++++.+++.+ -...++ +.|+.+.+++.|..|||+++
T Consensus 243 I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~--g~~~li~~id~IQ~g----lF~~il~~v~lp~~~k~~~~~erKi~~ 316 (435)
T PF03378_consen 243 IFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY--GPDFLIQTIDSIQPG----LFGMILEKVWLPDLQKVSGPIERKICA 316 (435)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH---HHHHHHHHHTTSTT----HHHHHHHHTHHHHGGG--SHHHHHHHH
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc--CHHHHHHHHHHhcCC----cHHHHHHHHhcCchhhcCCcchhhHHH
Confidence 99999999999999999999999989886654 789999999987643 233344 56999999999999999999
Q ss_pred HHHHHHHccCCcccc
Q 046316 829 TALALLLSTRHPELA 843 (966)
Q Consensus 829 laL~~Ll~~~d~~l~ 843 (966)
+|++||++..+....
T Consensus 317 vGltkLL~es~~~~~ 331 (435)
T PF03378_consen 317 VGLTKLLCESPAFLS 331 (435)
T ss_dssp HHHHHHHHSSTTHHH
T ss_pred HHHHHHHhccHhhhh
Confidence 999999977644333
No 13
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=7.5e-15 Score=173.04 Aligned_cols=673 Identities=17% Similarity=0.195 Sum_probs=411.7
Q ss_pred HHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCC----CccchHHHHH
Q 046316 45 AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPE----DWPDLLPFLL 120 (966)
Q Consensus 45 A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~----~WP~Ll~~L~ 120 (966)
.+-..||-+...|. .+=+.|.+...+++...|..+-++++.+.. .|++ +-+++++.+.
T Consensus 104 iAeia~~~l~e~WP-----------------ell~~L~q~~~S~~~~~rE~al~il~s~~~-~~~~~~~~~~~~l~~lf~ 165 (1075)
T KOG2171|consen 104 IAEIARNDLPEKWP-----------------ELLQFLFQSTKSPNPSLRESALLILSSLPE-TFGNTLQPHLDDLLRLFS 165 (1075)
T ss_pred HHHHHHhccccchH-----------------HHHHHHHHHhcCCCcchhHHHHHHHHhhhh-hhccccchhHHHHHHHHH
Confidence 45566666666663 244567777788999999999999988775 3443 3458888888
Q ss_pred HHhcccCchhhHhHHHHHHHHHHhhcc-ccchhhhhhhHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHHHHHhhhccc
Q 046316 121 KLITDQSNMNGVHGGLRCLALLSADLD-DAIVPKLVPVLFPVLHTIVSFPESY-DRYVRTKALSIVYSCTAMLGVMSGVC 198 (966)
Q Consensus 121 ~~l~s~~~~~~~~~aL~~L~~l~~~l~-~~~~~~i~~~l~p~L~~i~~~~~~~-~~~~r~~al~i~~~~~~~l~~~~~~~ 198 (966)
+++++++++ .+..|++++..+...++ +.........++|.++++++..... +...-..++++|...+..
T Consensus 166 q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~-------- 236 (1075)
T KOG2171|consen 166 QTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES-------- 236 (1075)
T ss_pred HhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh--------
Confidence 999887555 78889999999998885 2222233455667776666543211 112223344444433321
Q ss_pred hhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhH---HhhHHHHHHHHHHHHHhHHH
Q 046316 199 KTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAE---SEFLVVVRSLWQTFVSSLRV 275 (966)
Q Consensus 199 ~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~---~~~~~~~~~~~~~~~~~~~~ 275 (966)
.++++.+++...+++...+.... .-+-..|..+++++..+.+.-|...+ ++...++..+......
T Consensus 237 ---~pk~l~~~l~~ii~~~l~Ia~n~-----~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte---- 304 (1075)
T KOG2171|consen 237 ---EPKLLRPHLSQIIQFSLEIAKNK-----ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTE---- 304 (1075)
T ss_pred ---chHHHHHHHHHHHHHHHHHhhcc-----cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCC----
Confidence 46788899999999988887652 12236899999999999887554332 2222333322221111
Q ss_pred HHHhhccCCCC-CCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCH
Q 046316 276 YTRSSIEGTED-PYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDA 354 (966)
Q Consensus 276 y~~~~i~~~~~-~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp 354 (966)
+..+++ ...+..|.|. ..+......+++++++..+..+..-..+.++++. +++-
T Consensus 305 -----~~~D~ew~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~-------~l~S------------ 359 (1075)
T KOG2171|consen 305 -----EEDDDEWSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEA-------MLQS------------ 359 (1075)
T ss_pred -----cccchhhcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH-------HhcC------------
Confidence 111000 0001111111 1223678899999999887654433332333222 2221
Q ss_pred HHHhhcccCCccchhhHHHHHHHHHHHHhChh---hHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHH
Q 046316 355 NQFLADEDESTYSCRVSGALLLEEVVSYCGRE---GIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQL 431 (966)
Q Consensus 355 ~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~---~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l 431 (966)
..|.=|.||.--|..+++--++. .++.+++.+.+.++ + .+.|.|.||+.++|+++..+
T Consensus 360 ---------~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~---------D-phprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 360 ---------TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN---------D-PHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred ---------CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC---------C-CCHHHHHHHHHHHHhhhhhh
Confidence 12555999999999998866553 34556666655554 2 35899999999999999876
Q ss_pred HHhHhcCCccccHHHHHHHHHhhhhc--CCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHh----hhcCCCCCcE
Q 046316 432 LEAEVSGLTSVRLGELLEQMITEDIG--TGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAIT----TIAMDVPPPV 505 (966)
Q Consensus 432 ~~~~~~~~~~~~~~~~l~~~i~~~l~--~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~----~L~~~~~~~V 505 (966)
... +.......++|.+- .....++.+++.|+-++=.|++..+.+.+.+|+..+++ .|.+.....|
T Consensus 421 ~p~---------iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v 491 (1075)
T KOG2171|consen 421 QPE---------IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYV 491 (1075)
T ss_pred cHH---------HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 432 33334444443332 12467889999999999999998887777777777776 3334557789
Q ss_pred ehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChh----hHHHHHHHHHHH---Hhhcchhhcc----------
Q 046316 506 KVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDE----TLHLVLETLQAA---IKAGFLTASM---------- 568 (966)
Q Consensus 506 r~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d----~l~~~le~l~~~---i~~~~~~~~~---------- 568 (966)
|..+++||....+.. ++.+.||...+|..|.+++..++.+ ....++|++.-+ +|.+.|.+..
T Consensus 492 ~e~vvtaIasvA~AA-~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~ 570 (1075)
T KOG2171|consen 492 QEQAVTAIASVADAA-QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLEL 570 (1075)
T ss_pred HHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhh
Confidence 999999999988764 5689999999999999999887743 344556665432 4432211110
Q ss_pred ---------------------------------cccchHHHHHHHHhhcCChh---------------------------
Q 046316 569 ---------------------------------EPMISPLILNIWALHVSDPF--------------------------- 588 (966)
Q Consensus 569 ---------------------------------~~~l~p~~l~l~~~~~~d~~--------------------------- 588 (966)
...++|.+++- ..-+|.
T Consensus 571 ~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~t---a~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e 647 (1075)
T KOG2171|consen 571 QGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKT---ARLDPDVALSDEEDEEEEQDLDGWEVVELGDKE 647 (1075)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHh---hccCCcccCcCchhhhhccccccchhhccCCce
Confidence 01111222211 000000
Q ss_pred ---H-------------------------------------------------HHHHHHHHHHHH--------cCCCcHH
Q 046316 589 ---I-------------------------------------------------SIDAIEVLEAIK--------CSPGCIH 608 (966)
Q Consensus 589 ---~-------------------------------------------------~~~~~~~l~~l~--------~~~~~~~ 608 (966)
+ |.++.+++-.++ +.|....
T Consensus 648 ~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~ 727 (1075)
T KOG2171|consen 648 NIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLK 727 (1075)
T ss_pred eeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence 0 001111110000 1122222
Q ss_pred HHHHhhhcchHhhhcCCC-------------------------------------------------------C-C----
Q 046316 609 QLASRILPYVGPILNNPQ-------------------------------------------------------Q-Q---- 628 (966)
Q Consensus 609 ~l~~~~lP~l~~~l~~~~-------------------------------------------------------~-~---- 628 (966)
++.+.+.|.+...+...- . +
T Consensus 728 ~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~ 807 (1075)
T KOG2171|consen 728 QLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIE 807 (1075)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Confidence 333333333322221110 0 0
Q ss_pred --------CchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccC
Q 046316 629 --------PDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGD 700 (966)
Q Consensus 629 --------~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~ 700 (966)
+..+...+.+++..+++..++.+.+ .|+.++|.++..+..+.-.. .+-|..+++..|..+.++-
T Consensus 808 eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p-~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d~ie~~~~a~------ 879 (1075)
T KOG2171|consen 808 EEEDLDEQDAYLLDAISDILAALAKALKGSFLP-FFENFLPLIVKLLKSKKTVA-RQWAVCIFDDLIEGCGEAS------ 879 (1075)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHccccccH-HHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHhccccc------
Confidence 0113345566777777776666666 37788999999887655555 8999999999999877654
Q ss_pred CcchHHHHHHHHHhhc---CCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHH-----hhhHHHHHHHHH
Q 046316 701 SGFTMRSLLDAASRLL---NPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQS-----AQIAGLRSSLLL 772 (966)
Q Consensus 701 ~~~~l~~il~i~~~lL---~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~-----~~~~~~~~~li~ 772 (966)
.++.+.++..+.+.+ +|++...++..+|-+. +..|....|.+...+..++..++. .+......|.+.
T Consensus 880 -~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvla----q~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~g 954 (1075)
T KOG2171|consen 880 -AKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLA----QFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIG 954 (1075)
T ss_pred -chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----HHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHH
Confidence 345666666666665 3455556665555444 233333344444444444444443 223677889999
Q ss_pred HHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHHHccCCcccc
Q 046316 773 IFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELA 843 (966)
Q Consensus 773 vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~~~d~~l~ 843 (966)
.|+|++.. ++.. .+ ...|++.|+...+...+..+-+...--||.|+..+||-|-
T Consensus 955 aiaki~~~---~~~~-------------i~-vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~ 1008 (1075)
T KOG2171|consen 955 AIAKILLF---NPNR-------------IP-VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVL 1008 (1075)
T ss_pred HHHHHHHh---CCcc-------------Cc-HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeee
Confidence 99999988 5542 12 6779999999999999999999999999999999998755
No 14
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.70 E-value=1.7e-11 Score=134.51 Aligned_cols=520 Identities=16% Similarity=0.225 Sum_probs=280.5
Q ss_pred ccCCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc---------------------HHHHHHHHhhhccccccccccC
Q 046316 8 GDQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP---------------------AAVLLKHFIKKHWQEGEESFEL 66 (966)
Q Consensus 8 ~~~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p---------------------A~i~LKn~I~~~W~~~~~~~~~ 66 (966)
.+.|.+-+-++.+....+|....++|++-|.+++..| |.-.|-+.|++.|+
T Consensus 9 ~dLdiallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWk-------- 80 (1053)
T COG5101 9 KDLDIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWK-------- 80 (1053)
T ss_pred cccCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhh--------
Confidence 3678888999999999999999999999999999988 88999999999998
Q ss_pred CCCChHHHHHHHHHHHHHhh--hchHHHHHH-------HHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHH
Q 046316 67 PAVSSEEKEVIRKLLLSSLD--DTHRKICTA-------ISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLR 137 (966)
Q Consensus 67 ~~i~~~~K~~IR~~Ll~~L~--~~~~kIr~~-------~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~ 137 (966)
-++++-|.-||.-+++.+. +++.++|.+ +-..+.+|++.|||.+||+++|.|++.-+. +.+...+.|.
T Consensus 81 -llp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~--s~~vCeNnmi 157 (1053)
T COG5101 81 -LLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI--SMEVCENNMI 157 (1053)
T ss_pred -hCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc--hHHHHhccHH
Confidence 7899999999999999863 344555544 445567899999999999999999997653 5667778888
Q ss_pred HHHHHHhh---ccccch------------hhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhcc--chh
Q 046316 138 CLALLSAD---LDDAIV------------PKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGV--CKT 200 (966)
Q Consensus 138 ~L~~l~~~---l~~~~~------------~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~--~~~ 200 (966)
+|..+.++ ++.+++ ..=.+++|..+.+++.... +.++-...+.-+ ..++..+.-. +..
T Consensus 158 vLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~--~~SLi~ATLesl---lrfl~wiPl~yIfeT 232 (1053)
T COG5101 158 VLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSR--DESLIEATLESL---LRFLEWIPLDYIFET 232 (1053)
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--ChHHHHHHHHHH---HHHHhhCchhHHHHH
Confidence 88777664 444432 2335777778888886443 222322333322 2222222111 111
Q ss_pred HHHHhhHhhh---HH----HHHHHHHHhcCCCCCCCCChhhHHHH--HHHHHHHHHHhcchhhH-----------HhhHH
Q 046316 201 EMFALMMPML---KP----WMNHFSIILEHPVQPEDPDDWGVKME--VLKCLNQFIQNFPSLAE-----------SEFLV 260 (966)
Q Consensus 201 ~~~~~~~~~l---~~----w~~~~~~~L~~~~~~~d~~~~~lk~~--~~~~L~~l~~~f~~~~~-----------~~~~~ 260 (966)
++-+.+.+++ +. -+..+..+......|.+.+ .+-++- -+.|.......+-++.. ..=+.
T Consensus 233 nIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~-~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~ 311 (1053)
T COG5101 233 NIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQENA-EKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQI 311 (1053)
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcccch-hhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHH
Confidence 1112222111 11 1112222211110111111 111111 12222222222212111 12234
Q ss_pred HHHHHHHHHHHhHHHHHHhhccCCCCC----CCCCcCCCCCccchHHHHHHHHHHHHHHhcC--------------h---
Q 046316 261 VVRSLWQTFVSSLRVYTRSSIEGTEDP----YAGRYDSDGAEKSLDSFVIQLFEFLLTIVGS--------------A--- 319 (966)
Q Consensus 261 ~~~~~~~~~~~~~~~y~~~~i~~~~~~----~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~--------------~--- 319 (966)
|+...++.+.+...+|. ..+++.+-. ..-.|--.-..+.-.++..-++++|+..+-. |
T Consensus 312 Fvq~LA~fL~s~~~~~~-~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ 390 (1053)
T COG5101 312 FVQKLAQFLSSLYEVYI-SLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQ 390 (1053)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchh
Confidence 56666666666555552 122210000 0000000000011134556677777765410 0
Q ss_pred ------------------hHHHHH-HHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccC--CccchhhHHHHHHHH
Q 046316 320 ------------------KLVKVI-ASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDE--STYSCRVSGALLLEE 378 (966)
Q Consensus 320 ------------------~~~~~l-~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d--~~~s~R~aa~~lL~~ 378 (966)
+.++.+ +..+.++.-.+|..|.=+ |++-.-++|-+|-||+--- |+.+.-.+..++|--
T Consensus 391 ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrP-EEVliVendegEivRefvketDtI~lYksmRevLvy 469 (1053)
T COG5101 391 LSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRP-EEVLIVENDEGEIVREFVKETDTIELYKSMREVLVY 469 (1053)
T ss_pred ccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCc-ceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHH
Confidence 001000 111333333333444433 3332234455555543111 223333344444444
Q ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhc-
Q 046316 379 VVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIG- 457 (966)
Q Consensus 379 L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~- 457 (966)
|..-.-.++=..+.+-+-..+ .|.+-.|........|+|+++....+..+ ..|+.+++.-.+.
T Consensus 470 LthL~v~Dte~~mi~Klarq~--------dg~EWsw~nlNtLcWAIGSISGamsE~~E--------krF~VnviKdLL~L 533 (1053)
T COG5101 470 LTHLIVDDTEKYMIGKLARQL--------DGKEWSWNNLNTLCWAIGSISGAMSEVNE--------KRFFVNVIKDLLAL 533 (1053)
T ss_pred HhhhhhhhHHHHHHHHHHHHh--------cCCccchhhHhHHHHHHhcccchhhhHHH--------HHHHHHHHHHHHHH
Confidence 433322221111222222212 12332478888889999999987644322 2345554443322
Q ss_pred ----CCCCCChhHHHHHHHHHHHhhhhcC--hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCC-------CCC
Q 046316 458 ----TGVHQYPFLYARIFASVARFSSAIS--DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKAN-------KGN 524 (966)
Q Consensus 458 ----~~~~~~~~Lr~Ra~~~l~~f~~~~~--~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~-------~~~ 524 (966)
.+.+....+-+....++|+|-..+- ...++.....+...|..+ ...|+-.||..+-.+++.++ ...
T Consensus 534 cemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~-HEGvqDMACDtFiKIvqKC~~hFv~Qq~ge 612 (1053)
T COG5101 534 CEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHED-HEGVQDMACDTFIKIVQKCPVHFVTQQEGE 612 (1053)
T ss_pred HHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhhHHHHHHHHHhCcHHHhhcCCCC
Confidence 3456667777788899998866542 356666667777777644 77899999999988876542 123
Q ss_pred ccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc
Q 046316 525 FQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF 563 (966)
Q Consensus 525 l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~ 563 (966)
-.|++..|+..|-+.-.+-+--..+..-|++..+|++.|
T Consensus 613 sEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p 651 (1053)
T COG5101 613 SEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVP 651 (1053)
T ss_pred CCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccc
Confidence 457777776666655544444456666777777776655
No 15
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.5e-09 Score=120.15 Aligned_cols=493 Identities=14% Similarity=0.126 Sum_probs=279.8
Q ss_pred CHHHHHHHHHHhcCC-CHHHhHHHHHHHHhhccCc---------------------HHHHHHHHhhhccccccccccCCC
Q 046316 11 DQQWLLNCLSATLDP-NQEVRSFAEVSLNQASLQP---------------------AAVLLKHFIKKHWQEGEESFELPA 68 (966)
Q Consensus 11 ~~~~l~~~L~~~ls~-d~~~R~~AE~~L~~~~~~p---------------------A~i~LKn~I~~~W~~~~~~~~~~~ 68 (966)
+..++.+++..+.++ +.+....+++.|.++++.| .|+.|--.|.+||. .
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e---------~ 75 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWE---------E 75 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhc---------c
Confidence 467888999999887 7888889999999999876 78899999999998 5
Q ss_pred CChHHHHHHHHHHHHHh--hh-chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchh--hHhHHHHHHHHHH
Q 046316 69 VSSEEKEVIRKLLLSSL--DD-THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMN--GVHGGLRCLALLS 143 (966)
Q Consensus 69 i~~~~K~~IR~~Ll~~L--~~-~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~--~~~~aL~~L~~l~ 143 (966)
+++++...++..++..+ .+ .++-|-+-++.+++..+-+--||.||+-...++..++.+.++. .-..+..+|..+.
T Consensus 76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls 155 (982)
T KOG2022|consen 76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS 155 (982)
T ss_pred CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence 78889999999999876 23 3456667777788887778889999999999999998653331 1122333333332
Q ss_pred hhcccc----------------chhhhhhhHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHHHHHHHhhhccchhHH
Q 046316 144 ADLDDA----------------IVPKLVPVLFPVLHTIVSFPESYDR-----YVRTKALSIVYSCTAMLGVMSGVCKTEM 202 (966)
Q Consensus 144 ~~l~~~----------------~~~~i~~~l~p~L~~i~~~~~~~~~-----~~r~~al~i~~~~~~~l~~~~~~~~~~~ 202 (966)
.+..+ .+.......++.+-.++....+... -.+.++++.+.+-+..+....
T Consensus 156 -~~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~------- 227 (982)
T KOG2022|consen 156 -FMPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTG------- 227 (982)
T ss_pred -cCcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcccc-------
Confidence 11110 1111223334444444444332222 234556666665554322110
Q ss_pred HHhhHhhhHHHHHHHHHHhcCCCC----CC---------CCChhhHHHHHHHHHHHHHHhcchhh---------------
Q 046316 203 FALMMPMLKPWMNHFSIILEHPVQ----PE---------DPDDWGVKMEVLKCLNQFIQNFPSLA--------------- 254 (966)
Q Consensus 203 ~~~~~~~l~~w~~~~~~~L~~~~~----~~---------d~~~~~lk~~~~~~L~~l~~~f~~~~--------------- 254 (966)
.-...|.+.+..++..... .. ..-+..++..+..++.--...|++-+
T Consensus 228 -----~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~ 302 (982)
T KOG2022|consen 228 -----MDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVS 302 (982)
T ss_pred -----ccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHH
Confidence 0112233333333321100 00 00001122222222222222222200
Q ss_pred ------------H---------------HhhHHHHHHH-----HHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchH
Q 046316 255 ------------E---------------SEFLVVVRSL-----WQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLD 302 (966)
Q Consensus 255 ------------~---------------~~~~~~~~~~-----~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~ 302 (966)
. .+++..+..+ |+.+..+ +|+.....+ --|...--+
T Consensus 303 ~~~~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rl--v~vll~~t~----------~PG~ypveE 370 (982)
T KOG2022|consen 303 GKIQEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRL--VQVLLVLTN----------FPGQYPVEE 370 (982)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHH--HHHHHHHhC----------CCCCccHHH
Confidence 0 0111111111 1111110 000011110 011111002
Q ss_pred HHHHHHHHHHHHHhc---------ChhHHHHH-HHhHHHHHHHHHHhhcCC-HHHHHHHhhCHHHHhhcccCCccchhhH
Q 046316 303 SFVIQLFEFLLTIVG---------SAKLVKVI-ASNVRELVYHTIAFLQMT-EQQIHIWSIDANQFLADEDESTYSCRVS 371 (966)
Q Consensus 303 ~l~~~~~efl~~~~~---------~~~~~~~l-~~~l~~li~~li~~~~lt-~ed~e~w~~Dp~~fv~de~d~~~s~R~a 371 (966)
.+-...++||.++.. .+.....+ ++...+++..+++-+.++ ++....|..| +-|.+.+-|..
T Consensus 371 ~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~-------s~e~F~~YR~d 443 (982)
T KOG2022|consen 371 IVSDRTLIFWYTLQDEIMQTINETQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSD-------SREQFESYRKD 443 (982)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcc-------hHHHHHHHHHH
Confidence 333445667766531 11112233 366778888888666665 4555667654 22223455888
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHH
Q 046316 372 GALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQM 451 (966)
Q Consensus 372 a~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~ 451 (966)
-.|++...=+-+|+..+..+...+.+.+... .+++..|..-|+++|-+.++++.+.+..+ + -+...++..
T Consensus 444 iSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~-----d~~p~s~~~tEaci~~~~sva~~~~~t~~----~-~i~rl~~~~ 513 (982)
T KOG2022|consen 444 ISDLLMSSYSILGDGLLDFLIDTLEQALAAG-----DEDPDSLNRTEACIFQFQSVAEYLGETES----T-WIPRLFETS 513 (982)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhcc-----CCCchHHHHHHHHHHHHHHHHhhcCcchh----H-HHHHHHHhc
Confidence 8888888878888666666666666666543 23566899999999999999987643322 1 133333321
Q ss_pred HhhhhcCCCCCChhHHHHHHHHHHHhhhhcC--hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH
Q 046316 452 ITEDIGTGVHQYPFLYARIFASVARFSSAIS--DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM 529 (966)
Q Consensus 452 i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~--~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l 529 (966)
+..+. ...+|=+-+.+.-++|-++.++. |-.+...++.++++|... ---.+|...++.+|+.+ +..+.||+
T Consensus 514 --asik~-S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s---k~s~q~i~tl~tlC~~C-~~~L~py~ 586 (982)
T KOG2022|consen 514 --ASIKL-SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS---KESEQAISTLKTLCETC-PESLDPYA 586 (982)
T ss_pred --ccccc-ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc---hHHHHHHHHHHHHHHhh-hhhCchHH
Confidence 11111 12377788888899999999863 456778888899998522 12256888899999986 57899999
Q ss_pred HHHHHHHHHHHhhc--ChhhHHHHHHHHHHHHhh
Q 046316 530 MGLFSSLADLLHQA--RDETLHLVLETLQAAIKA 561 (966)
Q Consensus 530 ~~il~~L~~ll~~~--~~d~l~~~le~l~~~i~~ 561 (966)
.+++...-.+++.. ..-+...++.++..+.+.
T Consensus 587 d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 587 DQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred HHHHHHHHHHhcccccCchHHHHHHHHHHHHHHh
Confidence 99998888888653 223555666666666544
No 16
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.1e-09 Score=119.73 Aligned_cols=484 Identities=14% Similarity=0.208 Sum_probs=260.1
Q ss_pred HHHHHHHhcCC--CHHHhHHHHHHHHhhccCc--HHHHHHHHh-------hhcccccc----ccccCCCCChHHHHHHHH
Q 046316 15 LLNCLSATLDP--NQEVRSFAEVSLNQASLQP--AAVLLKHFI-------KKHWQEGE----ESFELPAVSSEEKEVIRK 79 (966)
Q Consensus 15 l~~~L~~~ls~--d~~~R~~AE~~L~~~~~~p--A~i~LKn~I-------~~~W~~~~----~~~~~~~i~~~~K~~IR~ 79 (966)
+.|++.+...| |...|++|-+.+++++..| ..|..-.++ .+.|.-.. -.......+..+.+.||.
T Consensus 5 iEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elqlvR~ 84 (980)
T KOG2021|consen 5 IEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQLVRF 84 (980)
T ss_pred HHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 45555565554 8999999999999999998 112111111 12222000 000112467778899999
Q ss_pred HHHHHh-----hhc----hHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc--
Q 046316 80 LLLSSL-----DDT----HRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD-- 148 (966)
Q Consensus 80 ~Ll~~L-----~~~----~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~-- 148 (966)
.+..-+ +.. +.-|++.+|.+++.+--..||+.||+++..++..+.-+.....+.-=+++|..+=+++.+
T Consensus 85 sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEiad~d 164 (980)
T KOG2021|consen 85 SVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEIADQD 164 (980)
T ss_pred HHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHhhhcc
Confidence 987643 333 678999999999999999999999999999999987531111244445555544444322
Q ss_pred -----cc----------h-hhhhhhHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhH
Q 046316 149 -----AI----------V-PKLVPVLFPVLHTIVSFPESY-DRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLK 211 (966)
Q Consensus 149 -----~~----------~-~~i~~~l~p~L~~i~~~~~~~-~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 211 (966)
++ + .+=++++....++++....+. .+.+-..++.++++.+.-+ ++.-...+
T Consensus 165 v~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWI---------dInLIaNd--- 232 (980)
T KOG2021|consen 165 VIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWI---------DINLIAND--- 232 (980)
T ss_pred ccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhh---------hhhhhhch---
Confidence 11 1 122355555556665533222 3344444555555433321 11111111
Q ss_pred HHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHh-hHHHHH-----------------HHHHHHHHhH
Q 046316 212 PWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESE-FLVVVR-----------------SLWQTFVSSL 273 (966)
Q Consensus 212 ~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~-~~~~~~-----------------~~~~~~~~~~ 273 (966)
.+++.+...++. ..+|..++.|+..++++--+++.+. +-..+. .+|..+.++.
T Consensus 233 ~f~nLLy~fl~i---------eelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLi 303 (980)
T KOG2021|consen 233 YFLNLLYKFLNI---------EELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLI 303 (980)
T ss_pred hHHHHHHHHHhH---------HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHH
Confidence 122333333321 1377777777777776654443321 001110 1122222211
Q ss_pred HHHHHhhccCCCCCCCCCcCCCCCcc----------------------chHHHHHHHHHHHHHHhc----ChhHHHHHHH
Q 046316 274 RVYTRSSIEGTEDPYAGRYDSDGAEK----------------------SLDSFVIQLFEFLLTIVG----SAKLVKVIAS 327 (966)
Q Consensus 274 ~~y~~~~i~~~~~~~~~~~d~~g~~~----------------------~~~~l~~~~~efl~~~~~----~~~~~~~l~~ 327 (966)
..| .++.+. .-++..+++.+. .+++....++.||+..+. .+....-.+-
T Consensus 304 tg~---gvel~~--i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~ 378 (980)
T KOG2021|consen 304 TGF---GVELTI--IISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKV 378 (980)
T ss_pred hhc---ceeeeh--hHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhc
Confidence 111 000000 000000111000 012233334444443321 1111111234
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhc-ccCC-ccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHH
Q 046316 328 NVRELVYHTIAFLQMTEQQIHIWSIDANQFLAD-EDES-TYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQE 405 (966)
Q Consensus 328 ~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~d-e~d~-~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~ 405 (966)
++..++..++.-+|+.+.. .|.+| +.+ |+|+ .-..|.---.|+++++.--+ +.+++.|.+.++.+...
T Consensus 379 ~l~~illai~kqicydemy--~nddn----~tg~EeEa~f~e~RkkLk~fqdti~~idp----sl~l~~Ir~slS~al~n 448 (980)
T KOG2021|consen 379 PLHKILLAIFKQICYDEMY--FNDDN----VTGDEEEAFFEEVRKKLKNFQDTIVVIDP----SLFLNNIRQSLSAALMN 448 (980)
T ss_pred cHHHHHHHHHHHHhccHHh--hcccC----CCCchHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHhc
Confidence 5667777777777776543 34444 222 3333 35778888888888877633 45677888878765332
Q ss_pred HhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHH--HHHHHHHhhhhcC--CCCCChhHHHHHHHHHHHhhhhc
Q 046316 406 KAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLG--ELLEQMITEDIGT--GVHQYPFLYARIFASVARFSSAI 481 (966)
Q Consensus 406 ~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~--~~l~~~i~~~l~~--~~~~~~~Lr~Ra~~~l~~f~~~~ 481 (966)
. ....|..-|+|++.+-.+++.+....- +...-++. .-+...+.-.+.+ ...+|+.++---+-.+-||...+
T Consensus 449 s---~e~swqevE~Aiylly~lgE~l~~~~~-~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff 524 (980)
T KOG2021|consen 449 S---KEESWQEVELAIYLLYNLGECLKNNYF-GLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFF 524 (980)
T ss_pred C---CcchHHHHHHHHHHHHHHhhccccccc-cccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHH
Confidence 1 234799999999999999887543211 10001111 1111111111111 24688888888888888988776
Q ss_pred ChhHHHHHHHHHHhhhcC-----CCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHh
Q 046316 482 SDGVLEHFLSAAITTIAM-----DVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLH 541 (966)
Q Consensus 482 ~~~~~~~~l~~~~~~L~~-----~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~ 541 (966)
+.+ .+.++.+++++-+ ..+..||..|..-+.+|+... +..+.|++..|++.+..+++
T Consensus 525 ~~e--sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlL-kkqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 525 STE--SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLL-KKQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred hcc--hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 532 2355555555432 236789999998888888763 45688999999999999983
No 17
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=4.4e-09 Score=119.12 Aligned_cols=617 Identities=13% Similarity=0.149 Sum_probs=341.6
Q ss_pred cCCHHHHHHHHHHhcCC---CHHHhHHHHHHHHh-hccC-c----------------HHHHHHHHhhhcccccccccc--
Q 046316 9 DQDQQWLLNCLSATLDP---NQEVRSFAEVSLNQ-ASLQ-P----------------AAVLLKHFIKKHWQEGEESFE-- 65 (966)
Q Consensus 9 ~~~~~~l~~~L~~~ls~---d~~~R~~AE~~L~~-~~~~-p----------------A~i~LKn~I~~~W~~~~~~~~-- 65 (966)
.+|..+.+.+|..-+-. ....|..|-.+||. +... | +-=+.|++|.+--....+.+.
T Consensus 30 ~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~ 109 (859)
T KOG1241|consen 30 SQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSS 109 (859)
T ss_pred hccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccch
Confidence 34566666666555432 34789999999994 3332 3 446677777776653332221
Q ss_pred ---------CCCCChHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhccCCC----CccchHHHHHHHhccc-Cchh
Q 046316 66 ---------LPAVSSEEKEVIRKLLLSSLDD-THRKICTAISMAVASIAAYDWPE----DWPDLLPFLLKLITDQ-SNMN 130 (966)
Q Consensus 66 ---------~~~i~~~~K~~IR~~Ll~~L~~-~~~kIr~~~a~~Is~Ia~~D~P~----~WP~Ll~~L~~~l~s~-~~~~ 130 (966)
...+|...=..+-..|..-..+ +...+|.+..++|+.|...==|+ +..+.+-.+++..+.. ++.+
T Consensus 110 Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~ 189 (859)
T KOG1241|consen 110 AAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAA 189 (859)
T ss_pred HHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchh
Confidence 0012222111222222222223 33579999999999999876675 4566777777776543 3556
Q ss_pred hHhHHHHHHHHHH---h-hccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhh
Q 046316 131 GVHGGLRCLALLS---A-DLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALM 206 (966)
Q Consensus 131 ~~~~aL~~L~~l~---~-~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~ 206 (966)
.+..|+.+|..-. + .+..|.= -.-++..+....+++ ..+++..|+..+-.+..+ -.+++
T Consensus 190 vRLaa~~aL~nsLef~~~nF~~E~e---rn~iMqvvcEatq~~---d~~i~~aa~~ClvkIm~L-----------yY~~m 252 (859)
T KOG1241|consen 190 VRLAALNALYNSLEFTKANFNNEME---RNYIMQVVCEATQSP---DEEIQVAAFQCLVKIMSL-----------YYEFM 252 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHhh---hceeeeeeeecccCC---cHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 7888999987533 3 2322210 012233333333333 356777776655554432 12334
Q ss_pred HhhhHH-HHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHH-------HhcchhhHHhhH-HHHHHHHHHHHHhHHHHH
Q 046316 207 MPMLKP-WMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFI-------QNFPSLAESEFL-VVVRSLWQTFVSSLRVYT 277 (966)
Q Consensus 207 ~~~l~~-w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~-------~~f~~~~~~~~~-~~~~~~~~~~~~~~~~y~ 277 (966)
.+++.. .+.+-......+ +-.++.+.++.-..+. -.|+.....+.+ .......+-+..+.|.-.
T Consensus 253 ~~yM~~alfaitl~amks~-------~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll 325 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSD-------NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL 325 (859)
T ss_pred HHHHHHHHHHHHHHHHcCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH
Confidence 444333 333333333331 1234555554444332 223322221111 000111111111222211
Q ss_pred HhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHH
Q 046316 278 RSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQF 357 (966)
Q Consensus 278 ~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~f 357 (966)
.......++ +|. ..|- .-.-.-.+++.+..+++.. ++.+++|++. +-
T Consensus 326 ~~L~kqde~-----~d~-DdWn-p~kAAg~CL~l~A~~~~D~------------Iv~~Vl~Fie---e~----------- 372 (859)
T KOG1241|consen 326 ELLTKQDED-----DDD-DDWN-PAKAAGVCLMLFAQCVGDD------------IVPHVLPFIE---EN----------- 372 (859)
T ss_pred HHHHhCCCC-----ccc-ccCc-HHHHHHHHHHHHHHHhccc------------chhhhHHHHH---Hh-----------
Confidence 111111111 111 1242 3456677888898888653 3333344331 00
Q ss_pred hhcccCCccchhhHHHHHHHHHHHHhChhhHHHH----HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHH
Q 046316 358 LADEDESTYSCRVSGALLLEEVVSYCGREGIDAI----IDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLE 433 (966)
Q Consensus 358 v~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l----~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~ 433 (966)
.....|.-|.+|.--+..+.+........++ ++.+...+. ++.-|. |+++-..+|.+++.+.+
T Consensus 373 ---i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~---------D~sl~V-kdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 373 ---IQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS---------DPSLWV-KDTAAWTLGRIADFLPE 439 (859)
T ss_pred ---cCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc---------Cchhhh-cchHHHHHHHHHhhchh
Confidence 0012355588888888888776654433222 222222222 333453 48999999999988764
Q ss_pred hHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC----h----hHHHHHHHHHHhhhcC-----C
Q 046316 434 AEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS----D----GVLEHFLSAAITTIAM-----D 500 (966)
Q Consensus 434 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~----~----~~~~~~l~~~~~~L~~-----~ 500 (966)
... +....+-+.+.+...+ ..+|++-..+||.+.-+++... . +...++|+.+++.|-. |
T Consensus 440 ~~~----n~~~l~~~l~~l~~gL----~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d 511 (859)
T KOG1241|consen 440 AII----NQELLQSKLSALLEGL----NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD 511 (859)
T ss_pred hcc----cHhhhhHHHHHHHHHh----hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc
Confidence 322 1111111223333444 5899999999999999997632 1 1334688888887741 2
Q ss_pred -CCCcEehhHHHHHHhhcccCCC---CCccccHHHHHHHHHHHHh-----hcCh----hhHHHHHHHHHHHHhhcc-hhh
Q 046316 501 -VPPPVKVGACRALSELLPKANK---GNFQPQMMGLFSSLADLLH-----QARD----ETLHLVLETLQAAIKAGF-LTA 566 (966)
Q Consensus 501 -~~~~Vr~~A~~al~~~~~~~~~---~~l~p~l~~il~~L~~ll~-----~~~~----d~l~~~le~l~~~i~~~~-~~~ 566 (966)
+..-.|.+|..||..++...++ ..++....-++..|-+.++ ..+. |.-..++.+|..++..-. ...
T Consensus 512 gnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~ 591 (859)
T KOG1241|consen 512 GNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIR 591 (859)
T ss_pred cchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccch
Confidence 3457999999999999987543 2344445555566655554 1111 233445556666655433 445
Q ss_pred cccccchHHHHHHHHhhcCChhHHHHHHHHHHHHH-cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhh
Q 046316 567 SMEPMISPLILNIWALHVSDPFISIDAIEVLEAIK-CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLK 645 (966)
Q Consensus 567 ~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~-~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~ 645 (966)
...+.++..+++++.+ .+...+-..+...+.++. +....|..+.+.+.|.+..-|.+.. .+..+..++-+.+-+.+
T Consensus 592 ~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~--e~qVc~~aVglVgdl~r 668 (859)
T KOG1241|consen 592 EVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ--EYQVCAAAVGLVGDLAR 668 (859)
T ss_pred hHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHH
Confidence 5567788888888654 444444455555555565 3467899999999999999997653 35677888999999998
Q ss_pred cCChhHHHHHHHHHhHHHHHHHhcc-CchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHh
Q 046316 646 SASTDVVKAAYDVCFDAVIRIILQS-EDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASR 714 (966)
Q Consensus 646 ~~~~~l~~~~~~~~fp~l~~~l~~s-~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~ 714 (966)
.....+.+. ...+...|++++... -++++-...+.||..+...-...| .+|+++++.++..
T Consensus 669 aL~~~i~py-~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F-------~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 669 ALEDDILPY-CDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADF-------EPYLEMVMPLLQQ 730 (859)
T ss_pred HHHhhhhhH-HHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHH
Confidence 887766663 566677778887632 245555666677777766544444 4688888887663
No 18
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.32 E-value=7.8e-07 Score=103.16 Aligned_cols=534 Identities=14% Similarity=0.192 Sum_probs=310.7
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHH
Q 046316 81 LLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFP 160 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p 160 (966)
++.-|..+...||+-.+++++.+|.+---+-+-++...|...|.++.....+..-.+||..+++--.. .|+...+.+.|
T Consensus 179 l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~-r~~~h~~~ivp 257 (1233)
T KOG1824|consen 179 LLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH-RFGSHLDKIVP 257 (1233)
T ss_pred HhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc-hhhcccchhhH
Confidence 33344667789999999999999987644568889999999998766677888899999999985443 46667788888
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCC------------
Q 046316 161 VLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPE------------ 228 (966)
Q Consensus 161 ~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~------------ 228 (966)
.+.+..+..+...-+.|..+++.+.+.+.- -+.-+.++.+...+.....+..+++-+
T Consensus 258 ~v~~y~~~~e~~dDELrE~~lQale~fl~r-----------cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 258 LVADYCNKIEEDDDELREYCLQALESFLRR-----------CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred HHHHHhcccccCcHHHHHHHHHHHHHHHHh-----------ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 888888765545678898888877765532 133456778888888888888754310
Q ss_pred ----C---------CC--hhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHH--------hHHHHHHh--hccC
Q 046316 229 ----D---------PD--DWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVS--------SLRVYTRS--SIEG 283 (966)
Q Consensus 229 ----d---------~~--~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~--------~~~~y~~~--~i~~ 283 (966)
| .+ .|++|..+.||+..++..-.+.+....+..-+.+..-|.. +..+|... .+..
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 0 01 2999999999999998777665443333332222222321 22334211 1111
Q ss_pred CCCCC--CCCcCCCCCccch---HHHHHHHHHHHHHHhcChhHHHHH--HHhHHHHHHHHHHhhcCCHHHHHHHhhC--H
Q 046316 284 TEDPY--AGRYDSDGAEKSL---DSFVIQLFEFLLTIVGSAKLVKVI--ASNVRELVYHTIAFLQMTEQQIHIWSID--A 354 (966)
Q Consensus 284 ~~~~~--~~~~d~~g~~~~~---~~l~~~~~efl~~~~~~~~~~~~l--~~~l~~li~~li~~~~lt~ed~e~w~~D--p 354 (966)
..+.. .+.-+..|.+.+. .+-+..+..-+..-++.++++... ...+.+++..+ |- ++.+ ...+ |
T Consensus 407 ~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~l-p~-~l~~-----~~~slvp 479 (1233)
T KOG1824|consen 407 VIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVL-PG-ALAQ-----HIPSLVP 479 (1233)
T ss_pred CcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhC-cc-hhhh-----cccccch
Confidence 00000 0111222332111 222223333333333333332110 01111111110 10 0000 0000 0
Q ss_pred -HHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHH
Q 046316 355 -NQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLE 433 (966)
Q Consensus 355 -~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~ 433 (966)
..|.-.+-..+.+.+.-+..|+..+....+.+.+.+..+.+...+..+- +++ .+|.---||...+.+...+..
T Consensus 480 gI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV-----~d~-fyKisaEAL~v~~~lvkvirp 553 (1233)
T KOG1824|consen 480 GIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAV-----GDP-FYKISAEALLVCQQLVKVIRP 553 (1233)
T ss_pred hhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHh-----cCc-hHhhhHHHHHHHHHHHHHhcc
Confidence 0111111112356677777787776666676767666666655554432 233 467776678888888777653
Q ss_pred hHhcCCccccHHHHHHHHHh---hhhcCCCCCChhHHHHHHHHHHHhhhhcC---hhHHHHHHHHHHhhhcCCCCCcEeh
Q 046316 434 AEVSGLTSVRLGELLEQMIT---EDIGTGVHQYPFLYARIFASVARFSSAIS---DGVLEHFLSAAITTIAMDVPPPVKV 507 (966)
Q Consensus 434 ~~~~~~~~~~~~~~l~~~i~---~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~---~~~~~~~l~~~~~~L~~~~~~~Vr~ 507 (966)
.... ..+|..+++.+++. ..+. ..+..-=+|-||+-++|++...+. ...+...++..+..|. +.+-|.
T Consensus 554 l~~~--~~~d~~~~v~~m~~~tl~rL~-a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~---nEiTRl 627 (1233)
T KOG1824|consen 554 LQPP--SSFDASPYVKTMYDCTLQRLK-ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG---NEITRL 627 (1233)
T ss_pred cCCC--ccCCCChhHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh---chhHHH
Confidence 2210 11554444444332 2233 235667799999999999988764 2345566666666665 568999
Q ss_pred hHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHH---HHHHHHHHHHhhcc---hhhcccccchHHHHHHHH
Q 046316 508 GACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLH---LVLETLQAAIKAGF---LTASMEPMISPLILNIWA 581 (966)
Q Consensus 508 ~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~---~~le~l~~~i~~~~---~~~~~~~~l~p~~l~l~~ 581 (966)
.|++|+..+....-+-.+.|.+..++..+.+.+.....-... ..++.+....+... .......++.|++
T Consensus 628 ~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Li----- 702 (1233)
T KOG1824|consen 628 TAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLI----- 702 (1233)
T ss_pred HHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhh-----
Confidence 999999998876544567888888888888888665443222 23444444443211 1111112232221
Q ss_pred hhcCChhHHHHHHHHHHHHHcC-CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHH
Q 046316 582 LHVSDPFISIDAIEVLEAIKCS-PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVV 652 (966)
Q Consensus 582 ~~~~d~~~~~~~~~~l~~l~~~-~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~ 652 (966)
..+|-.+...+..++..+... |.+.....+.+++.+...++++.-++ ......+.+...++....+++.
T Consensus 703 -sesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg-~al~~~l~~f~alV~t~~~~l~ 772 (1233)
T KOG1824|consen 703 -SESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQG-GALSALLLFFQALVITKEPDLD 772 (1233)
T ss_pred -hHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccc-hHHHHHHHHHHHHHhcCCCCcc
Confidence 123444566778888888854 77888888889999998888876443 2345566777777776655543
No 19
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.4e-08 Score=110.20 Aligned_cols=624 Identities=15% Similarity=0.138 Sum_probs=355.2
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHH-------hccCCCC-ccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccc
Q 046316 79 KLLLSSLDDTHRKICTAISMAVASIA-------AYDWPED-WPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAI 150 (966)
Q Consensus 79 ~~Ll~~L~~~~~kIr~~~a~~Is~Ia-------~~D~P~~-WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~ 150 (966)
..|.+.|.+++......+--++++|. ..||+++ -.-++|.+++..+.+ ++..+--|+.|++.+.-.-+. .
T Consensus 131 p~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~~q-a 208 (885)
T KOG2023|consen 131 PQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQTQ-A 208 (885)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecCcH-H
Confidence 44555666666555555555565554 3455532 224889999999885 777788899999887643222 2
Q ss_pred hhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCC
Q 046316 151 VPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDP 230 (966)
Q Consensus 151 ~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~ 230 (966)
+.--+...+..++.+.++ .++.+|+..+..|...++. +++-+.|++...++.+++..+.+
T Consensus 209 l~~~iD~Fle~lFalanD---~~~eVRk~vC~alv~Llev-----------r~dkl~phl~~IveyML~~tqd~------ 268 (885)
T KOG2023|consen 209 LYVHIDKFLEILFALAND---EDPEVRKNVCRALVFLLEV-----------RPDKLVPHLDNIVEYMLQRTQDV------ 268 (885)
T ss_pred HHHHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHh-----------cHHhcccchHHHHHHHHHHccCc------
Confidence 333346667777777743 3578998766655544432 45557789999999998876642
Q ss_pred ChhhHHHHHHHHHHHHHHhc-c-hhhHHhhHHHHHHHHHHHHH------hH-----------------HHHHHhh--cc-
Q 046316 231 DDWGVKMEVLKCLNQFIQNF-P-SLAESEFLVVVRSLWQTFVS------SL-----------------RVYTRSS--IE- 282 (966)
Q Consensus 231 ~~~~lk~~~~~~L~~l~~~f-~-~~~~~~~~~~~~~~~~~~~~------~~-----------------~~y~~~~--i~- 282 (966)
+ ..+-.++++....+.+.- + ..+.||+..+++...+-+.- ++ |.+.+.- .+
T Consensus 269 d-E~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~ 347 (885)
T KOG2023|consen 269 D-ENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNG 347 (885)
T ss_pred c-hhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCc
Confidence 2 237788899888887654 2 35778888877755443321 00 0000000 00
Q ss_pred C---CCCCCCCCc---CCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHH
Q 046316 283 G---TEDPYAGRY---DSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQ 356 (966)
Q Consensus 283 ~---~~~~~~~~~---d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~ 356 (966)
. .++..++.. |+.+.| .+.++-..+++.++++.+.. ++..++|++.=+-
T Consensus 348 ~~~~~eDdddDe~DDdD~~~dW-NLRkCSAAaLDVLanvf~~e------------lL~~l~PlLk~~L------------ 402 (885)
T KOG2023|consen 348 EDADDEDDDDDEDDDDDAFSDW-NLRKCSAAALDVLANVFGDE------------LLPILLPLLKEHL------------ 402 (885)
T ss_pred cccccccccccccccccccccc-cHhhccHHHHHHHHHhhHHH------------HHHHHHHHHHHHc------------
Confidence 0 000011111 112234 35677777888887765421 3333334332000
Q ss_pred HhhcccCCccchhhHHHHHHHHHHHHhCh---hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHH
Q 046316 357 FLADEDESTYSCRVSGALLLEEVVSYCGR---EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLE 433 (966)
Q Consensus 357 fv~de~d~~~s~R~aa~~lL~~L~~~~~~---~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~ 433 (966)
..+.|-+|.|+.-.+..+++-.-+ ..++.+++++.+.+.. ++...|--....++..+.-+..
T Consensus 403 -----~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~D----------KkplVRsITCWTLsRys~wv~~ 467 (885)
T KOG2023|consen 403 -----SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDD----------KKPLVRSITCWTLSRYSKWVVQ 467 (885)
T ss_pred -----CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhcc----------CccceeeeeeeeHhhhhhhHhc
Confidence 012366788888888888885432 2355677777776653 2233333344455555544332
Q ss_pred hHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh---hHHHHHHHHHHhhhc--CCCCCcEehh
Q 046316 434 AEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD---GVLEHFLSAAITTIA--MDVPPPVKVG 508 (966)
Q Consensus 434 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~---~~~~~~l~~~~~~L~--~~~~~~Vr~~ 508 (966)
... ..+ +.+.+...+...+ +.+..++..||...+.|-+.-.+ +++..++...+.+++ +..++.+-.-
T Consensus 468 ~~~---~~~-f~pvL~~ll~~ll----D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYD 539 (885)
T KOG2023|consen 468 DSR---DEY-FKPVLEGLLRRLL----DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYD 539 (885)
T ss_pred CCh---Hhh-hHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHH
Confidence 111 011 2333333222222 78899999999999999887543 456666666666664 2235555566
Q ss_pred HHHHHHhhccc--CCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc--hhh---ccccc---chHHHHH
Q 046316 509 ACRALSELLPK--ANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF--LTA---SMEPM---ISPLILN 578 (966)
Q Consensus 509 A~~al~~~~~~--~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~--~~~---~~~~~---l~p~~l~ 578 (966)
|+.++...+.+ ..+.+++=.+|+++++.-.+.++ +..+-.++|++..+...-. |.+ ...+. |+.-.++
T Consensus 540 AIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~--DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q 617 (885)
T KOG2023|consen 540 AIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDS--DKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQ 617 (885)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcc--cchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHH
Confidence 88888887754 23455777777777776544332 2256677888877654321 222 21111 1122233
Q ss_pred HHHhhcCChh-------HHHHHHHHHHHHH-cCCCcHHHHH--HhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCC
Q 046316 579 IWALHVSDPF-------ISIDAIEVLEAIK-CSPGCIHQLA--SRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAS 648 (966)
Q Consensus 579 l~~~~~~d~~-------~~~~~~~~l~~l~-~~~~~~~~l~--~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~ 648 (966)
..++...||. +...+++++.-|+ +.++...++. +.++-.+..+++.+.. +....+.-+++-+.|.++
T Consensus 618 ~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~p---eVRQS~FALLGDltk~c~ 694 (885)
T KOG2023|consen 618 LLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVP---EVRQSAFALLGDLTKACF 694 (885)
T ss_pred HHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCCh---HHHHHHHHHHHHHHHHHH
Confidence 3344444442 2335667777666 3344444433 2345556666665432 455678889999998875
Q ss_pred hhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCC-CCCCccccc
Q 046316 649 TDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNP-DLESSGSLF 727 (966)
Q Consensus 649 ~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~-~~~~~~~~~ 727 (966)
+..-+. ...++|.+-.-+ ..+...+..||+=++..+-.+......+|- ++.+..++.|+.+--.+ .+-++.|.-
T Consensus 695 ~~v~p~-~~~fl~~lg~Nl-~~~~isv~nNA~WAiGeia~k~g~~~~~~v---~~vl~~L~~iin~~~~~~tllENtAIT 769 (885)
T KOG2023|consen 695 EHVIPN-LADFLPILGANL-NPENISVCNNAIWAIGEIALKMGLKMKQYV---SPVLEDLITIINRQNTPKTLLENTAIT 769 (885)
T ss_pred Hhccch-HHHHHHHHhhcC-ChhhchHHHHHHHHHHHHHHHhchhhhhHH---HHHHHHHHHHhcccCchHHHHHhhhhh
Confidence 433332 223334333211 345566788888888887766443322210 12333334444321111 223566777
Q ss_pred hHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCHHHHHH
Q 046316 728 VGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFIN 790 (966)
Q Consensus 728 vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~~~~~~~~~l~ 790 (966)
+|+|-. .+|..++|+++.+++--..+|.+-+...-+.|...=||+++.. ||..++.
T Consensus 770 IGrLg~----~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~v---Np~~vv~ 825 (885)
T KOG2023|consen 770 IGRLGY----ICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINV---NPSGVVS 825 (885)
T ss_pred hhhhhc----cCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheee---Cchhhhh
Confidence 787763 4566679999999999999998877667777777788888888 7776654
No 20
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=7.2e-08 Score=106.93 Aligned_cols=448 Identities=16% Similarity=0.202 Sum_probs=241.2
Q ss_pred HHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHH
Q 046316 45 AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSL---DDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLK 121 (966)
Q Consensus 45 A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L---~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~ 121 (966)
|+-.+||.|+...+ .+++..-...|+.+++.+ .+.+++||.|++.+|+.+|-+- | +|.+-++.+++
T Consensus 37 aaqTlr~Ki~~~F~---------~Lp~~~~~slrdsl~thl~~l~~~~~~i~tQL~vavA~Lal~~-~-~W~n~I~e~v~ 105 (559)
T KOG2081|consen 37 AAQTLRNKIQYDFS---------ELPPLTHASLRDSLITHLKELHDHPDVIRTQLAVAVAALALHM-P-EWVNPIFELVR 105 (559)
T ss_pred HHHHHHHHHHhhHH---------hcCcchhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh-H-hhcchHHHHHH
Confidence 88999999999887 566666778888777654 4444599999999999999754 5 79987888888
Q ss_pred HhcccCchhhHhHHHHHHHHHHhhccc----------cc----hhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Q 046316 122 LITDQSNMNGVHGGLRCLALLSADLDD----------AI----VPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSC 187 (966)
Q Consensus 122 ~l~s~~~~~~~~~aL~~L~~l~~~l~~----------~~----~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~ 187 (966)
.+.+. .+. +.+-|.+|.-+-++..+ .. +..-...++-.+..+++.....+......++++|.+-
T Consensus 106 ~~~~~-~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SW 183 (559)
T KOG2081|consen 106 ALSNK-HPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSW 183 (559)
T ss_pred HhhcC-Ccc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhh
Confidence 77653 222 44444444433333211 01 1222333444455555544323234445566666554
Q ss_pred HHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHh---------c-------c
Q 046316 188 TAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQN---------F-------P 251 (966)
Q Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~---------f-------~ 251 (966)
... ... . ++.+.... +.+......++. . .+-..+..|+..+... | +
T Consensus 184 l~~-~~~----~---~d~v~a~~-pLi~l~F~sl~~-~--------~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v 245 (559)
T KOG2081|consen 184 LRL-HVF----P---PDQVLASF-PLITLAFRSLSD-D--------ELHEEATECICALLYCSLDRSEGLPLAAILFIGV 245 (559)
T ss_pred hhh-ccC----C---HHHHHhhh-HHHHHHHHHccc-c--------hhhHHHHHHHHHHHHHhhhhhccCchhHHHhccc
Confidence 331 000 0 11111111 112222222221 0 0111111111111111 1 0
Q ss_pred hhh----H----HhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCC---cCCCCCccchHHHHHHHHHHHHHHhc---
Q 046316 252 SLA----E----SEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGR---YDSDGAEKSLDSFVIQLFEFLLTIVG--- 317 (966)
Q Consensus 252 ~~~----~----~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~---~d~~g~~~~~~~l~~~~~efl~~~~~--- 317 (966)
..+ . ..-.+-...+..+|....+.|......+.++..... .-..|.+. .+++...|.||..+-+
T Consensus 246 ~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~--~evie~SF~fW~~lse~l~ 323 (559)
T KOG2081|consen 246 IILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHND--TEVIEASFNFWYSLSEELT 323 (559)
T ss_pred cccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCc--hhhhhhhHHhhhhhHHHHh
Confidence 000 0 000112334455555555555332222111000000 00011111 3678888999987632
Q ss_pred ---ChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHH
Q 046316 318 ---SAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDA 394 (966)
Q Consensus 318 ---~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~ 394 (966)
.......++|+...++..+.+.+++..++..+. +|++++..-|-..++++.+++--.|... .+..
T Consensus 324 ~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~---------Ee~~~f~~fR~~v~dvl~Dv~~iigs~e---~lk~ 391 (559)
T KOG2081|consen 324 LTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLP---------EEESEFFEFRLKVGDVLKDVAFIIGSDE---CLKQ 391 (559)
T ss_pred ccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCc---------cchhHHHHHHHHHHHHHHHHHHHhCcHH---HHHH
Confidence 245567889999999999999999887322221 2333456679999999999999888643 2333
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHH
Q 046316 395 ASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASV 474 (966)
Q Consensus 395 i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l 474 (966)
+...+.+ +...|..-||+|+.+..++..+...+. + -+...++- | .+. +.+.| +|+.++.++
T Consensus 392 ~~~~l~e--------~~~~We~~EAaLF~l~~~~~~~~~~e~----~-i~pevl~~-i---~nl-p~Q~~-~~~ts~ll~ 452 (559)
T KOG2081|consen 392 MYIRLKE--------NNASWEEVEAALFILRAVAKNVSPEEN----T-IMPEVLKL-I---CNL-PEQAP-LRYTSILLL 452 (559)
T ss_pred HHHHHcc--------CCCchHHHHHHHHHHHHHhccCCcccc----c-hHHHHHHH-H---hCC-ccchh-HHHHHHHHH
Confidence 3333433 223699999999999998765432111 1 13333332 2 221 12334 999999999
Q ss_pred HHhhhhcC--hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc-ChhhHHHH
Q 046316 475 ARFSSAIS--DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA-RDETLHLV 551 (966)
Q Consensus 475 ~~f~~~~~--~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~-~~d~l~~~ 551 (966)
|.|.+++. |+.+...++-+..+++.. +....|+.|+...+..+ ...+.+.++.+.+.+..+.+.- .+|... +
T Consensus 453 g~~~ew~~~~p~~le~v~~~~~~~~~~~---~~as~~a~~~~~i~~~c-~~~~~~l~~~~~~l~~~l~~~~~~~e~a~-l 527 (559)
T KOG2081|consen 453 GEYSEWVEQHPELLEPVLRYIRQGLQLK---RLASAAALAFHRICSAC-RVQMTCLIPSLLELIRSLDSTQINEEAAC-L 527 (559)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhhhc---chhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHhccHHHHH-H
Confidence 99999974 567777777777777632 25555666666666542 1234455555555555444332 234444 6
Q ss_pred HHHHHHHHhh
Q 046316 552 LETLQAAIKA 561 (966)
Q Consensus 552 le~l~~~i~~ 561 (966)
+..+..++..
T Consensus 528 ~~~~s~i~~~ 537 (559)
T KOG2081|consen 528 LQGISLIISN 537 (559)
T ss_pred HHHHHHHHhc
Confidence 6666666654
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.13 E-value=5.8e-06 Score=96.15 Aligned_cols=608 Identities=15% Similarity=0.161 Sum_probs=303.4
Q ss_pred HHHHHhcCCCHHHhHHHHHHHH-hhccCcHHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHhhhchHHHHHH
Q 046316 17 NCLSATLDPNQEVRSFAEVSLN-QASLQPAAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTA 95 (966)
Q Consensus 17 ~~L~~~ls~d~~~R~~AE~~L~-~~~~~pA~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L~~~~~kIr~~ 95 (966)
.++....|+|.+.|=-|..-|. ++.+. .+ .+.++.-..+-+.|+++|.|.+..+++-
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd--si--------------------~Ld~dSe~kvv~~lLklL~D~ngEVQnl 66 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD--SI--------------------KLDDDSERKVVKMLLKLLEDKNGEVQNL 66 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh--hh--------------------hccccchhHHHHHHHHHHhccCcHHHHH
Confidence 6778888999999998888876 45432 11 2333333445567899999999999999
Q ss_pred HHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc---cch-hhhhhhHHHHHHHHhcCCCC
Q 046316 96 ISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD---AIV-PKLVPVLFPVLHTIVSFPES 171 (966)
Q Consensus 96 ~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~---~~~-~~i~~~l~p~L~~i~~~~~~ 171 (966)
+--|++-++..=--++-..+.+.|...+-++ ......-+=..|.....++.. .-+ ..+.+.+.|.+.+.....+
T Consensus 67 AVKClg~lvsKvke~~le~~ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe- 144 (1233)
T KOG1824|consen 67 AVKCLGPLVSKVKEDQLETIVENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQE- 144 (1233)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcc-
Confidence 9999998884332234455555555554332 222222222223333333321 111 2233333333333332211
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhh-ccch--------------hH-HHHhh-----------HhhhHHHHHHHHHHhcCC
Q 046316 172 YDRYVRTKALSIVYSCTAMLGVMS-GVCK--------------TE-MFALM-----------MPMLKPWMNHFSIILEHP 224 (966)
Q Consensus 172 ~~~~~r~~al~i~~~~~~~l~~~~-~~~~--------------~~-~~~~~-----------~~~l~~w~~~~~~~L~~~ 224 (966)
....+|.-++.+......-++.+. .+|. .. +++.+ ...+....+.+..-|..+
T Consensus 145 ~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~ 224 (1233)
T KOG1824|consen 145 DVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNR 224 (1233)
T ss_pred cchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 111233222222211111100000 0000 00 00000 011222222222323221
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHH
Q 046316 225 VQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSF 304 (966)
Q Consensus 225 ~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l 304 (966)
.....-...++||+.+...-++.+..|+..+++.+.+..+. ++ .++ +++
T Consensus 225 ------~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~---------~e---------~~d-------DEL 273 (1233)
T KOG1824|consen 225 ------TQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNK---------IE---------EDD-------DEL 273 (1233)
T ss_pred ------CchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcc---------cc---------cCc-------HHH
Confidence 11122233456777777666666666666665544432221 11 111 456
Q ss_pred HHHHHHHHHHHhc-ChhHHHHHHHhHHHHHHHHHHhhcCC--------HHHHHHHhhCHHHHh-----hcccCCccchhh
Q 046316 305 VIQLFEFLLTIVG-SAKLVKVIASNVRELVYHTIAFLQMT--------EQQIHIWSIDANQFL-----ADEDESTYSCRV 370 (966)
Q Consensus 305 ~~~~~efl~~~~~-~~~~~~~l~~~l~~li~~li~~~~lt--------~ed~e~w~~Dp~~fv-----~de~d~~~s~R~ 370 (966)
...+++-+...+. .| +.+-|+.++++...+.|+... +++.+...+|-+++- .|++|.+|-+|.
T Consensus 274 rE~~lQale~fl~rcp---~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRR 350 (1233)
T KOG1824|consen 274 REYCLQALESFLRRCP---KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRR 350 (1233)
T ss_pred HHHHHHHHHHHHHhCh---hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHH
Confidence 6666665555543 22 244577777888777766643 222222322222211 122234699999
Q ss_pred HHHHHHHHHHHHhCh---hhHHHHHHHHHHHHHHHHHH-----------------------------HhcCC-CchhHHH
Q 046316 371 SGALLLEEVVSYCGR---EGIDAIIDAASKRFNESQQE-----------------------------KAAGS-TVWWRMR 417 (966)
Q Consensus 371 aa~~lL~~L~~~~~~---~~~~~l~~~i~~~l~~~~~~-----------------------------~~~~~-~~~w~~r 417 (966)
+|..++..+...+.+ ...+.+.+.+..+|.+-+.. ...|. .+-|-.+
T Consensus 351 aAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~ 430 (1233)
T KOG1824|consen 351 AAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLS 430 (1233)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHH
Confidence 999999988887653 22334444444444332221 00111 1247888
Q ss_pred HHHHHHHHhhHHHHHHhHhcCC-ccccHHHHHHHHH--hhh----------------hcCCCCCChhHHHHHHHHHHHhh
Q 046316 418 EATLFALAFLSEQLLEAEVSGL-TSVRLGELLEQMI--TED----------------IGTGVHQYPFLYARIFASVARFS 478 (966)
Q Consensus 418 EaaL~alg~l~~~l~~~~~~~~-~~~~~~~~l~~~i--~~~----------------l~~~~~~~~~Lr~Ra~~~l~~f~ 478 (966)
+...+.+.++..++.+..-+.. .-|.+ +...+ .|+ |+ ..+....++--++.++.-..
T Consensus 431 ~~~~~iVkai~~qlr~ks~kt~~~cf~l---L~eli~~lp~~l~~~~~slvpgI~~~l~-DkSsss~~ki~~L~fl~~~L 506 (1233)
T KOG1824|consen 431 DQVPLIVKAIQKQLREKSVKTRQGCFLL---LTELINVLPGALAQHIPSLVPGIIYSLN-DKSSSSNLKIDALVFLYSAL 506 (1233)
T ss_pred hhhHHHHHHHHHHHhhccccchhhHHHH---HHHHHHhCcchhhhcccccchhhhhhcC-CccchHHHHHHHHHHHHHHH
Confidence 8999999999887653221100 00111 11111 111 11 11233344444553333222
Q ss_pred hhcChhHHHHH----HHHHHhhhcCCCCCcEehhHHHHHHhhcccC----C--CCCccccHHHHHHHHHHHHhhc--Chh
Q 046316 479 SAISDGVLEHF----LSAAITTIAMDVPPPVKVGACRALSELLPKA----N--KGNFQPQMMGLFSSLADLLHQA--RDE 546 (966)
Q Consensus 479 ~~~~~~~~~~~----l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~----~--~~~l~p~l~~il~~L~~ll~~~--~~d 546 (966)
...+++.+... ...++.+.. ++-+-|-..|......|++-. + .-...|++.+++...++.+... +.|
T Consensus 507 ~s~~p~~fhp~~~~Ls~~v~~aV~-d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~Dqe 585 (1233)
T KOG1824|consen 507 ISHPPEVFHPHLSALSPPVVAAVG-DPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQE 585 (1233)
T ss_pred hcCChhhcccchhhhhhHHHHHhc-CchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHH
Confidence 22233333332 333333333 323445455666666666531 1 1356789999999988888544 446
Q ss_pred hHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCC--cHHHHHHhhhcchHhhhcC
Q 046316 547 TLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPG--CIHQLASRILPYVGPILNN 624 (966)
Q Consensus 547 ~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~--~~~~l~~~~lP~l~~~l~~ 624 (966)
+...++.++..++..-. .....++ |..+.++.+...+..-|..+...+..++.+|- ...+....++|.+..-+..
T Consensus 586 VkeraIscmgq~i~~fg--D~l~~eL-~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK 662 (1233)
T KOG1824|consen 586 VKERAISCMGQIIANFG--DFLGNEL-PRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRK 662 (1233)
T ss_pred HHHHHHHHHHHHHHHHh--hhhhhhh-HHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHH
Confidence 67777777666654311 0111233 77777778788888888888888888876654 3455666677777666553
Q ss_pred CCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccce
Q 046316 625 PQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLM 694 (966)
Q Consensus 625 ~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~ 694 (966)
... .+--..+..+..++++....++...++.++..+..++..| |-.+-|.+..++......-+.-+
T Consensus 663 ~~r---~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises-dlhvt~~a~~~L~tl~~~~ps~l 728 (1233)
T KOG1824|consen 663 NQR---ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES-DLHVTQLAVAFLTTLAIIQPSSL 728 (1233)
T ss_pred HHH---HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHhcccHHH
Confidence 211 1222334444455554443444444455566666666544 55677888888888776654443
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.11 E-value=4.5e-05 Score=84.42 Aligned_cols=324 Identities=13% Similarity=0.153 Sum_probs=195.2
Q ss_pred CccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCcccc
Q 046316 364 STYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVR 443 (966)
Q Consensus 364 ~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~ 443 (966)
+.|.-|.+|..-+..+.+...+....++.+.....+..-. .++.-| .|+.+-.++|.+++.+-+..+. ...
T Consensus 378 ~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m-----~D~~l~-vk~ttAwc~g~iad~va~~i~p---~~H 448 (858)
T COG5215 378 ESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEM-----SDSCLW-VKSTTAWCFGAIADHVAMIISP---CGH 448 (858)
T ss_pred chhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc-----ccceee-hhhHHHHHHHHHHHHHHHhcCc---ccc
Confidence 3466688888888888776554433333322222221100 122234 4555556699999876554331 011
Q ss_pred HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh------hHHHHHHHHHHhhhcC-----CCCCcEehhHHHH
Q 046316 444 LGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD------GVLEHFLSAAITTIAM-----DVPPPVKVGACRA 512 (966)
Q Consensus 444 ~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~------~~~~~~l~~~~~~L~~-----~~~~~Vr~~A~~a 512 (966)
+....... +..+ ..+|+.-..++|..-.+..++++ .....+|.+++++|-. .++.-.|+++..|
T Consensus 449 l~~~vsa~-liGl----~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsa 523 (858)
T COG5215 449 LVLEVSAS-LIGL----MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSA 523 (858)
T ss_pred ccHHHHHH-Hhhh----hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 22222222 2223 48999999999999999988753 5677888888888741 3456789999999
Q ss_pred HHhhcccCCCCCccccHHHHHHHHHHHHhhc----C-----------hhhHHHHHHHHHHHHhhcc-hhhcccccchHHH
Q 046316 513 LSELLPKANKGNFQPQMMGLFSSLADLLHQA----R-----------DETLHLVLETLQAAIKAGF-LTASMEPMISPLI 576 (966)
Q Consensus 513 l~~~~~~~~~~~l~p~l~~il~~L~~ll~~~----~-----------~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~ 576 (966)
|..++..++ +.+.|.+..+..-..+-+.++ + +|.....+..|..+|...+ .....+++++.+.
T Consensus 524 Lgtli~~~~-d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf 602 (858)
T COG5215 524 LGTLILICP-DAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELF 602 (858)
T ss_pred HHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999887653 344444444433333322211 1 1223333333333333322 2333445788888
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHc-CCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHH
Q 046316 577 LNIWALHVSDPFISIDAIEVLEAIKC-SPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAA 655 (966)
Q Consensus 577 l~l~~~~~~d~~~~~~~~~~l~~l~~-~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~ 655 (966)
+++.. ..+....-..+.-.+.++.+ ..+-|.++.++++|.+.+.++.. ...+...++.+++-+.+.....+-..
T Consensus 603 ~r~le-s~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~---d~~v~~~avglvgdlantl~~df~~y- 677 (858)
T COG5215 603 IRILE-STKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT---DRFVLNSAVGLVGDLANTLGTDFNIY- 677 (858)
T ss_pred HHHHh-ccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch---hHHHHHHHHHHHHHHHHHhhhhHHHH-
Confidence 88843 33333455555555666664 36789999999999999999532 34677888999999988887766653
Q ss_pred HHHHhHHHHHHHhcc-CchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHh
Q 046316 656 YDVCFDAVIRIILQS-EDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASR 714 (966)
Q Consensus 656 ~~~~fp~l~~~l~~s-~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~ 714 (966)
...+...|++++..+ .++++-...+.|+..+...-...| .+|++.++-.+..
T Consensus 678 ~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F-------~~YL~~im~L~qq 730 (858)
T COG5215 678 ADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANF-------ESYLDMIMMLFQQ 730 (858)
T ss_pred HHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHH
Confidence 455677888888642 345555556667777665433323 4688888877664
No 23
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.00 E-value=1.2e-05 Score=93.73 Aligned_cols=158 Identities=10% Similarity=-0.091 Sum_probs=91.8
Q ss_pred HHhHHHHHHHHhhccC---c---------------HHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHhhhch
Q 046316 28 EVRSFAEVSLNQASLQ---P---------------AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTH 89 (966)
Q Consensus 28 ~~R~~AE~~L~~~~~~---p---------------A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L~~~~ 89 (966)
..|+.|=-.|+++-.. | ..+..+.++.-+|.+ .++..+.++...+...+--.+...-+.-
T Consensus 53 ~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~Ll~~l~~s--n~ki~~~vay~is~Ia~~D~Pd~WpElv 130 (1005)
T KOG2274|consen 53 PLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQLLNLLDDS--NSKIRSAVAYAISSIAAVDYPDEWPELV 130 (1005)
T ss_pred hHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHHHhhhhcc--ccccchHHHHHHHHHHhccCchhhHHHH
Confidence 5677777777765442 2 445555566667843 2333334554444444444444444455
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhh-hHHHHHHHHhcC
Q 046316 90 RKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVP-VLFPVLHTIVSF 168 (966)
Q Consensus 90 ~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~-~l~p~L~~i~~~ 168 (966)
+.|++.+++ -...+.+++++-|++|...+..-... .....+++.|+....+....+.......++ .+|..++.++..
T Consensus 131 ~~i~~~l~~-~n~n~i~~am~vL~el~~ev~~ee~~-~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~ 208 (1005)
T KOG2274|consen 131 PFILKLLSS-GNENSIHGAMRVLAELSDEVDVEEMF-FVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITN 208 (1005)
T ss_pred HHHHHHHhc-cchhhhhhHHHHHHHHHHHHHHHHHh-cccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhH
Confidence 667776666 56888888888888888877644443 356678999998888887776654433333 344444444432
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHH
Q 046316 169 PESYDRYVRTKALSIVYSCTAMLG 192 (966)
Q Consensus 169 ~~~~~~~~r~~al~i~~~~~~~l~ 192 (966)
+....+..+...+.+|+....
T Consensus 209 ---~~e~~~~~~~~~~s~~l~~~~ 229 (1005)
T KOG2274|consen 209 ---VEEVWAEHVKVFLSQILNQFM 229 (1005)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Confidence 323333444455566666543
No 24
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00057 Score=84.11 Aligned_cols=123 Identities=26% Similarity=0.478 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCC--CHHHhHHHHHHHHhhccCc---------------------HHHHHHHHhhhccccccccccCCC
Q 046316 12 QQWLLNCLSATLDP--NQEVRSFAEVSLNQASLQP---------------------AAVLLKHFIKKHWQEGEESFELPA 68 (966)
Q Consensus 12 ~~~l~~~L~~~ls~--d~~~R~~AE~~L~~~~~~p---------------------A~i~LKn~I~~~W~~~~~~~~~~~ 68 (966)
..+++.++..+.+| ++..|.+|.+-+.+++..| |.-+|-+.|+..|+ .
T Consensus 9 ~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~---------~ 79 (1041)
T KOG2020|consen 9 DSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWN---------S 79 (1041)
T ss_pred HHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcc---------c
Confidence 35678888888877 6889999999999998876 66777777888887 6
Q ss_pred CChHHHHHHHHHHHHHh-----hh----chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHH
Q 046316 69 VSSEEKEVIRKLLLSSL-----DD----THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCL 139 (966)
Q Consensus 69 i~~~~K~~IR~~Ll~~L-----~~----~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L 139 (966)
++.+.|..+|..++... .+ +.+.++..++.++.+|+..|||..||++++.+.+.... ++.....+|.+|
T Consensus 80 ~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~--s~~~~el~m~Il 157 (1041)
T KOG2020|consen 80 LPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT--SETVCELSMIIL 157 (1041)
T ss_pred CCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc--CcccchHHHHHH
Confidence 89999999999999874 12 36789999999999999999999999999999999875 345556666666
Q ss_pred HHHHhh
Q 046316 140 ALLSAD 145 (966)
Q Consensus 140 ~~l~~~ 145 (966)
..+.++
T Consensus 158 ~lLsEd 163 (1041)
T KOG2020|consen 158 LLLSEE 163 (1041)
T ss_pred HHHHHH
Confidence 666665
No 25
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.53 E-value=5.5e-07 Score=87.73 Aligned_cols=99 Identities=27% Similarity=0.421 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc---c------------chhh
Q 046316 89 HRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD---A------------IVPK 153 (966)
Q Consensus 89 ~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~---~------------~~~~ 153 (966)
++.||+++|.+++.|+.+|||++||++++.+++.+++ ++.....+|.+|..+.+++.+ . .+..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999986 467888999999988887642 0 1344
Q ss_pred hhhhHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHHHH
Q 046316 154 LVPVLFPVLHTIVSFPESYD-RYVRTKALSIVYSCTA 189 (966)
Q Consensus 154 i~~~l~p~L~~i~~~~~~~~-~~~r~~al~i~~~~~~ 189 (966)
..+.++..+.+++....... ..+...+++++.+++.
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~ 115 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS 115 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 46667777777776543221 5667778888877665
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.47 E-value=0.0066 Score=79.69 Aligned_cols=581 Identities=15% Similarity=0.134 Sum_probs=296.5
Q ss_pred HHHHhhhc---hHHHHHHHHHHHHHHHhccCCCCcc-----chHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchh
Q 046316 81 LLSSLDDT---HRKICTAISMAVASIAAYDWPEDWP-----DLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVP 152 (966)
Q Consensus 81 Ll~~L~~~---~~kIr~~~a~~Is~Ia~~D~P~~WP-----~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~ 152 (966)
|+..|.++ +..++..++.++..++.+. .+.|. +.+|.+++.+++ +++.....|..+|..++..-.+ .-.
T Consensus 149 Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~-en~~~~IIeaGaVp~LV~LLsS-~d~~lQ~eAa~aLa~Lass~ee-~~~ 225 (2102)
T PLN03200 149 LWDQLQPGNKQDKVVEGLLTGALRNLCGST-DGFWSATLEAGGVDILVKLLSS-GNSDAQANAASLLARLMMAFES-SIS 225 (2102)
T ss_pred HHHHHhCCchhhHHHHHHHHHHHHHHhcCc-cchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCChH-HHH
Confidence 34444443 3346677778888888755 45675 478999999988 4888888899988877654322 111
Q ss_pred h-hhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCC--CC
Q 046316 153 K-LVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQP--ED 229 (966)
Q Consensus 153 ~-i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~--~d 229 (966)
. +-...+|.|.+++.+.. +..+|..|..++..+.. ... +..+.+.+. .-++.++.++..+... ..
T Consensus 226 aVIeaGaVP~LV~LL~sg~--~~~VRE~AA~AL~nLAs-------~s~-e~r~~Iv~a--GgIp~LI~lL~sp~~e~~~~ 293 (2102)
T PLN03200 226 KVLDAGAVKQLLKLLGQGN--EVSVRAEAAGALEALSS-------QSK-EAKQAIADA--GGIPALINATVAPSKEFMQG 293 (2102)
T ss_pred HHHHCCCHHHHHHHHccCC--ChHHHHHHHHHHHHHhc-------CCH-HHHHHHHHC--CCHHHHHHHHhCcchhhhcc
Confidence 1 22345789999997542 34677766665544331 111 122222221 2234455555543210 01
Q ss_pred CChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHH------HHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHH
Q 046316 230 PDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRS------LWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDS 303 (966)
Q Consensus 230 ~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~------~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~ 303 (966)
+....++..+.-+|..+....+. +-+++...+.. .....-.+ .|....++.. ++ . ..
T Consensus 294 ~~~~~Lqe~AvwALsNIcgg~~~-ll~~L~~ll~s~rd~~~~ada~gAL--ayll~l~d~~----------~~--~--~~ 356 (2102)
T PLN03200 294 EFAQALQENAMGALANICGGMSA-LILYLGELSESPRSPAPIADTLGAL--AYALMVFDSS----------AE--S--TR 356 (2102)
T ss_pred ccchHHHHHHHHHHHHHhCCchh-hHHHHHHhhcccchHHHHHHHHhhH--HHHHHhcCCc----------hh--h--hh
Confidence 11234677777777776655432 12222111100 00000000 1211111110 00 0 00
Q ss_pred HH--HHHHHHHHHHhcChh--------------------HHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcc
Q 046316 304 FV--IQLFEFLLTIVGSAK--------------------LVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADE 361 (966)
Q Consensus 304 l~--~~~~efl~~~~~~~~--------------------~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de 361 (966)
.+ ..+...|..+++++. .++.+.. .+.++.++..++.+.
T Consensus 357 ~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~--~daik~LV~LL~~~~----------------- 417 (2102)
T PLN03200 357 AFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH--AEAKKVLVGLITMAT----------------- 417 (2102)
T ss_pred hccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh--ccchhhhhhhhccCC-----------------
Confidence 00 122334444444332 1111110 011222222222222
Q ss_pred cCCccchhhHHHHHHHHHHHHhChh---h-HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhc
Q 046316 362 DESTYSCRVSGALLLEEVVSYCGRE---G-IDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVS 437 (966)
Q Consensus 362 ~d~~~s~R~aa~~lL~~L~~~~~~~---~-~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~ 437 (966)
..++..+...|..++..-.+. + -...++.+.+.+.. . .-..++.++.+++.++....+....
T Consensus 418 ----~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s---------~-s~~iQ~~A~~~L~nLa~~ndenr~a 483 (2102)
T PLN03200 418 ----ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL---------S-SEQQQEYAVALLAILTDEVDESKWA 483 (2102)
T ss_pred ----HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC---------C-CHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 223444555555555331100 0 01123344444442 1 1356777888998887432111110
Q ss_pred CCcccc-HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhH---H--HHHHHHHHhhhcCCCCCcEehhHHH
Q 046316 438 GLTSVR-LGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGV---L--EHFLSAAITTIAMDVPPPVKVGACR 511 (966)
Q Consensus 438 ~~~~~~-~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~---~--~~~l~~~~~~L~~~~~~~Vr~~A~~ 511 (966)
...-+ +.. |.+ .+. ++++-+|..|+|+++..+.. +++. . ...++.+++.|.+. +..+|..|+.
T Consensus 484 -IieaGaIP~-LV~----LL~---s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~ 552 (2102)
T PLN03200 484 -ITAAGGIPP-LVQ----LLE---TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAK 552 (2102)
T ss_pred -HHHCCCHHH-HHH----HHc---CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHH
Confidence 00011 222 222 333 67889999999999999864 2211 1 12456677777643 6778889999
Q ss_pred HHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc----hhh-cccccchHHHHHHHHhhcCC
Q 046316 512 ALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF----LTA-SMEPMISPLILNIWALHVSD 586 (966)
Q Consensus 512 al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~----~~~-~~~~~l~p~~l~l~~~~~~d 586 (966)
||.+++.......+ ..+..++...+......+++++..++.... ... .....-+|.+.++ .++. +
T Consensus 553 AL~nLi~~~d~~~I--------~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sg-s 622 (2102)
T PLN03200 553 TLTKLVRTADAATI--------SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSS-K 622 (2102)
T ss_pred HHHHHHhccchhHH--------HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCC-C
Confidence 99999876433322 345556655555666667777766544211 110 0012345888888 4333 5
Q ss_pred hhHHHHHHHHHHHHHcC-CC-cHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHH-HHHhHHH
Q 046316 587 PFISIDAIEVLEAIKCS-PG-CIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAY-DVCFDAV 663 (966)
Q Consensus 587 ~~~~~~~~~~l~~l~~~-~~-~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~-~~~fp~l 663 (966)
+..+..+..++..++.. ++ +-.-...-.+|.+...+.... ......+..-|+.+.+.....--..++ .-+.|+|
T Consensus 623 ~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~---~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL 699 (2102)
T PLN03200 623 EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT---EAVATQSARALAALSRSIKENRKVSYAAEDAIKPL 699 (2102)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC---hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHH
Confidence 56777777889888843 44 233345667888888887643 245566777777787765543322223 3478999
Q ss_pred HHHHhccCchHHhhhhHHHHHHHHhcCcc--ceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCCh
Q 046316 664 IRIILQSEDHSEMQNATECLATFISGGRQ--LMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPS 741 (966)
Q Consensus 664 ~~~l~~s~d~~~lq~~~~~l~~~i~~~~~--~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~ 741 (966)
++++ ++.+.++.+.+..+|.++++.+.. .+.+ ..++..++ ++|.... +...-++...+..+..+.+.
T Consensus 700 ~~LL-~~~d~~v~e~Al~ALanLl~~~e~~~ei~~-----~~~I~~Lv----~lLr~G~-~~~k~~Aa~AL~~L~~~~~~ 768 (2102)
T PLN03200 700 IKLA-KSSSIEVAEQAVCALANLLSDPEVAAEALA-----EDIILPLT----RVLREGT-LEGKRNAARALAQLLKHFPV 768 (2102)
T ss_pred HHHH-hCCChHHHHHHHHHHHHHHcCchHHHHHHh-----cCcHHHHH----HHHHhCC-hHHHHHHHHHHHHHHhCCCh
Confidence 9988 467889999999999999987532 2221 12344444 4443221 12222445555566666552
Q ss_pred -h-hhHhH--HHHHHHHHHHHHHh
Q 046316 742 -Q-MAQHI--RDLVAALVRRLQSA 761 (966)
Q Consensus 742 -~-l~~~l--~~iL~a~~~rL~~~ 761 (966)
+ +..++ ...+.+++.-|...
T Consensus 769 ~~~~~~~~~~~g~v~~l~~~L~~~ 792 (2102)
T PLN03200 769 DDVLKDSVQCRGTVLALVDLLNST 792 (2102)
T ss_pred hHHHHHHHHHhCcHHHHHHHHhcC
Confidence 1 21221 24455555555543
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.47 E-value=0.0014 Score=78.46 Aligned_cols=492 Identities=19% Similarity=0.179 Sum_probs=267.3
Q ss_pred HHHHHHHHHhcCCCHHHhHHHHHHHHhhccC--c--------------HHHHHHHHhhhccccccccccCCCCChHHHHH
Q 046316 13 QWLLNCLSATLDPNQEVRSFAEVSLNQASLQ--P--------------AAVLLKHFIKKHWQEGEESFELPAVSSEEKEV 76 (966)
Q Consensus 13 ~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~--p--------------A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~ 76 (966)
+++.+++.... .+...|+.|=.+|-.+... + --..+|+.+--+|+.-.. -+++.--.
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~------~~~~~~~l 79 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLH------EDPELLIL 79 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT------TSHHHHHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh------cchhHHHH
Confidence 45556655544 4666666666666654433 1 236677777776663321 24443444
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhh
Q 046316 77 IRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVP 156 (966)
Q Consensus 77 IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~ 156 (966)
+-+.+.+-|.+++..+|..+-.+++.|+ -|+-.|.+++.+.+++.++ ++..+..|+.++..+++...+ .++
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~-----~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPD-----LVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHC-----CHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHH-----HHH
Confidence 5556666678889999988888888877 4557899999999999985 888899999999999986332 333
Q ss_pred h-HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhH
Q 046316 157 V-LFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGV 235 (966)
Q Consensus 157 ~-l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~l 235 (966)
. +++.+.+++.+. ++.++..|+.++..+ . ++ +....+.++.....+.+++.. ++.| .
T Consensus 151 ~~~~~~l~~lL~d~---~~~V~~~a~~~l~~i-~--------~~---~~~~~~~~~~~~~~L~~~l~~------~~~~-~ 208 (526)
T PF01602_consen 151 DELIPKLKQLLSDK---DPSVVSAALSLLSEI-K--------CN---DDSYKSLIPKLIRILCQLLSD------PDPW-L 208 (526)
T ss_dssp GGHHHHHHHHTTHS---SHHHHHHHHHHHHHH-H--------CT---HHHHTTHHHHHHHHHHHHHTC------CSHH-H
T ss_pred HHHHHHHhhhccCC---cchhHHHHHHHHHHH-c--------cC---cchhhhhHHHHHHHhhhcccc------cchH-H
Confidence 3 688888888544 367777777777765 1 01 111114555566666666643 2445 4
Q ss_pred HHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHH--HHH--HhhccCCCCCCCCCcCCCCCccchHHHHHHHHHH
Q 046316 236 KMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLR--VYT--RSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEF 311 (966)
Q Consensus 236 k~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~y~--~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~ef 311 (966)
+..+++++..+....+..... ..+++.+...+.+..+ .|. +..+. +.+ . ..+...++..
T Consensus 209 q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~---------l~~-----~-~~~~~~~~~~ 271 (526)
T PF01602_consen 209 QIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIK---------LSP-----S-PELLQKAINP 271 (526)
T ss_dssp HHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HSS-----S-HHHHHHHHHH
T ss_pred HHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHH---------hhc-----c-hHHHHhhHHH
Confidence 556666666544333322110 1222222222221000 000 00000 000 0 1223333333
Q ss_pred HHHHhcChhHHHHHHHhHHHHHHHHH-HhhcCCHHHHHHHhhCHHH-HhhcccCCccchhhHHHHHHHHHHHHhChhhHH
Q 046316 312 LLTIVGSAKLVKVIASNVRELVYHTI-AFLQMTEQQIHIWSIDANQ-FLADEDESTYSCRVSGALLLEEVVSYCGREGID 389 (966)
Q Consensus 312 l~~~~~~~~~~~~l~~~l~~li~~li-~~~~lt~ed~e~w~~Dp~~-fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~ 389 (966)
+...+..+.. ++.-+.-..+ ........... .....- ++. .++..++|..+.++|..++.... +.
T Consensus 272 L~~lL~s~~~------nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~--~~~d~~Ir~~~l~lL~~l~~~~n---~~ 338 (526)
T PF01602_consen 272 LIKLLSSSDP------NVRYIALDSLSQLAQSNPPAVF--NQSLILFFLL--YDDDPSIRKKALDLLYKLANESN---VK 338 (526)
T ss_dssp HHHHHTSSSH------HHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHH--CSSSHHHHHHHHHHHHHH--HHH---HH
T ss_pred HHHHhhcccc------hhehhHHHHHHHhhcccchhhh--hhhhhhheec--CCCChhHHHHHHHHHhhcccccc---hh
Confidence 3333322211 0110111111 12221212221 111111 222 12346689999999999987643 44
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHH
Q 046316 390 AIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYAR 469 (966)
Q Consensus 390 ~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~R 469 (966)
.++..+.+.+... .+-..++.++..++.++.... -+.+.++. .+...+. .....+..-
T Consensus 339 ~Il~eL~~~l~~~---------~d~~~~~~~i~~I~~la~~~~---------~~~~~~v~-~l~~ll~---~~~~~~~~~ 396 (526)
T PF01602_consen 339 EILDELLKYLSEL---------SDPDFRRELIKAIGDLAEKFP---------PDAEWYVD-TLLKLLE---ISGDYVSNE 396 (526)
T ss_dssp HHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHG---------SSHHHHHH-HHHHHHH---CTGGGCHCH
T ss_pred hHHHHHHHHHHhc---------cchhhhhhHHHHHHHHHhccC---------chHHHHHH-HHHHhhh---hccccccch
Confidence 4555555555321 123478889999999987641 12334343 3434454 344566666
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHH
Q 046316 470 IFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLH 549 (966)
Q Consensus 470 a~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~ 549 (966)
+.-.+.++.... ++.....+..++..+..-.+..++..++..+..|.+.... .. ..+.++..+.+...+...++..
T Consensus 397 ~~~~i~~ll~~~-~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~ 472 (526)
T PF01602_consen 397 IINVIRDLLSNN-PELREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKL 472 (526)
T ss_dssp HHHHHHHHHHHS-TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHH
Confidence 666666665543 3334456666677766434556778888888888876322 23 5667777777777766667888
Q ss_pred HHHHHHHHHHhhcchhhcccccchHHHHHHHHh-hcCChhHHHHHHHHHHHH
Q 046316 550 LVLETLQAAIKAGFLTASMEPMISPLILNIWAL-HVSDPFISIDAIEVLEAI 600 (966)
Q Consensus 550 ~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~-~~~d~~~~~~~~~~l~~l 600 (966)
.++.++.......+.. ...+.+.+++.+. ++ ...|+.++..|.+.+.-+
T Consensus 473 ~ilt~~~Kl~~~~~~~-~~~~~i~~~~~~~-~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 473 QILTALAKLFKRNPEN-EVQNEILQFLLSL-ATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHHHSCST-THHHHHHHHHHCH-HHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCch-hhHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHHH
Confidence 8888888887654410 0011344444444 33 255788888777766544
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.43 E-value=0.00051 Score=82.16 Aligned_cols=438 Identities=17% Similarity=0.224 Sum_probs=241.0
Q ss_pred HHHHHHHhcCCCHHHhHHHHHHHHhhccC-c-HHHHHHHHhhhcccccccccc-------CCCCChHHHHHHHHHHHHHh
Q 046316 15 LLNCLSATLDPNQEVRSFAEVSLNQASLQ-P-AAVLLKHFIKKHWQEGEESFE-------LPAVSSEEKEVIRKLLLSSL 85 (966)
Q Consensus 15 l~~~L~~~ls~d~~~R~~AE~~L~~~~~~-p-A~i~LKn~I~~~W~~~~~~~~-------~~~i~~~~K~~IR~~Ll~~L 85 (966)
..+++....|.|...|+-+--.+..+... | ..++.=|.+.+.-....+..+ ..-.+++--+.+-..+.+++
T Consensus 44 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll 123 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLL 123 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHh
Confidence 34555566688888999988888877665 3 456666666665443222110 11224555556666677778
Q ss_pred hhchHHHHHHHHHHHHHHHhccCCCCccc-hHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 046316 86 DDTHRKICTAISMAVASIAAYDWPEDWPD-LLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHT 164 (966)
Q Consensus 86 ~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~-Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~ 164 (966)
.++++-||+.++.++.+|.+. +|+.-+. +++.+.+++.+. |+..+.+|+.++.++ + ..++....+.+.++..+.+
T Consensus 124 ~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~-~~~V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~ 199 (526)
T PF01602_consen 124 SDPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDK-DPSVVSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQ 199 (526)
T ss_dssp HSSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHS-SHHHHHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCC-cchhHHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhh
Confidence 899999999999999999987 4776655 799999999875 888899999999999 2 1111112344555555555
Q ss_pred HhcCCCCCcHHHHHHHHHHHH-----------------HHHHHHHhhhc-cchhHHHHhh-----HhhhHHHHHHHHHHh
Q 046316 165 IVSFPESYDRYVRTKALSIVY-----------------SCTAMLGVMSG-VCKTEMFALM-----MPMLKPWMNHFSIIL 221 (966)
Q Consensus 165 i~~~~~~~~~~~r~~al~i~~-----------------~~~~~l~~~~~-~~~~~~~~~~-----~~~l~~w~~~~~~~L 221 (966)
++.... +-.+..+++++. .+...+..... .--..+.-+. .+.+...++.+..++
T Consensus 200 ~l~~~~---~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL 276 (526)
T PF01602_consen 200 LLSDPD---PWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLL 276 (526)
T ss_dssp HHTCCS---HHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH
T ss_pred cccccc---hHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHh
Confidence 543321 222222222221 11111100000 0000000000 013344445555555
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhH-HhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccc
Q 046316 222 EHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAE-SEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKS 300 (966)
Q Consensus 222 ~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~ 300 (966)
.. .+..+|--+++++..+...++..+. ++.. + ..+. ++++
T Consensus 277 ~s-------~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~-~-----------------~~l~---------~~~d----- 317 (526)
T PF01602_consen 277 SS-------SDPNVRYIALDSLSQLAQSNPPAVFNQSLI-L-----------------FFLL---------YDDD----- 317 (526)
T ss_dssp TS-------SSHHHHHHHHHHHHHHCCHCHHHHGTHHHH-H-----------------HHHH---------CSSS-----
T ss_pred hc-------ccchhehhHHHHHHHhhcccchhhhhhhhh-h-----------------heec---------CCCC-----
Confidence 43 2234666677777777666633222 1110 0 0111 1111
Q ss_pred hHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhh-cCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHH
Q 046316 301 LDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFL-QMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEV 379 (966)
Q Consensus 301 ~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~-~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L 379 (966)
..+....++.+..++... ++..++..+..|+ ..++ .+.|..+...+..+
T Consensus 318 -~~Ir~~~l~lL~~l~~~~--------n~~~Il~eL~~~l~~~~d---------------------~~~~~~~i~~I~~l 367 (526)
T PF01602_consen 318 -PSIRKKALDLLYKLANES--------NVKEILDELLKYLSELSD---------------------PDFRRELIKAIGDL 367 (526)
T ss_dssp -HHHHHHHHHHHHHH--HH--------HHHHHHHHHHHHHHHC-----------------------HHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHhhccccc--------chhhHHHHHHHHHHhccc---------------------hhhhhhHHHHHHHH
Confidence 457777888888777533 3334566666655 1111 12477888889999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCC
Q 046316 380 VSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTG 459 (966)
Q Consensus 380 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 459 (966)
+..++.. ....+..+.+.+... . ....+.+...+..+... ..+ . -+..+... ...+.
T Consensus 368 a~~~~~~-~~~~v~~l~~ll~~~---------~-~~~~~~~~~~i~~ll~~---~~~-----~-~~~~l~~L-~~~l~-- 424 (526)
T PF01602_consen 368 AEKFPPD-AEWYVDTLLKLLEIS---------G-DYVSNEIINVIRDLLSN---NPE-----L-REKILKKL-IELLE-- 424 (526)
T ss_dssp HHHHGSS-HHHHHHHHHHHHHCT---------G-GGCHCHHHHHHHHHHHH---STT-----T-HHHHHHHH-HHHHT--
T ss_pred HhccCch-HHHHHHHHHHhhhhc---------c-ccccchHHHHHHHHhhc---Chh-----h-hHHHHHHH-HHHHH--
Confidence 9998654 455666666666531 1 12233333333333221 111 0 11112222 22222
Q ss_pred CCCChhHHHHHHHHHHHhhhhcCh-hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHH
Q 046316 460 VHQYPFLYARIFASVARFSSAISD-GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLAD 538 (966)
Q Consensus 460 ~~~~~~Lr~Ra~~~l~~f~~~~~~-~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ 538 (966)
.-.++-++..++|++|.|++..+. +....++..+.+.+.. .+..||....+|+..+....+....++ .+++.+.+
T Consensus 425 ~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~-~~~~vk~~ilt~~~Kl~~~~~~~~~~~---~i~~~~~~ 500 (526)
T PF01602_consen 425 DISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIE-ESPEVKLQILTALAKLFKRNPENEVQN---EILQFLLS 500 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHSCSTTHHH---HHHHHHHC
T ss_pred HhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhCCchhhHH---HHHHHHHH
Confidence 145677899999999999998753 3566777777777653 356799999999988876543333433 55567777
Q ss_pred HHh--hcChhhHHHHHHHH
Q 046316 539 LLH--QARDETLHLVLETL 555 (966)
Q Consensus 539 ll~--~~~~d~l~~~le~l 555 (966)
+.. ..+.|..-.+.+-+
T Consensus 501 ~~~~~s~~~evr~Ra~~y~ 519 (526)
T PF01602_consen 501 LATEDSSDPEVRDRAREYL 519 (526)
T ss_dssp HHHHS-SSHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHH
Confidence 776 33446555554443
No 29
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.016 Score=70.69 Aligned_cols=288 Identities=14% Similarity=0.143 Sum_probs=178.8
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC-CCCCccccHHHHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFSSLADL 539 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~l 539 (966)
+-.++.+.+-+-.+-..+...+.+...+++ .+..-..+..+.-||..|.+-|..++... .......++..|.+.+..-
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds 705 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDS 705 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 445778888777777776666666666666 34444333335678888999898888762 2234566777788888888
Q ss_pred HhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchH-HHHHHHHhhcCChhHHHHHHHHHHHHH--cC--CCcHHH---H
Q 046316 540 LHQARDETLHLVLETLQAAIKAGF-LTASMEPMISP-LILNIWALHVSDPFISIDAIEVLEAIK--CS--PGCIHQ---L 610 (966)
Q Consensus 540 l~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p-~~l~l~~~~~~d~~~~~~~~~~l~~l~--~~--~~~~~~---l 610 (966)
++....-....-+.++..+++..+ ....+....+| .++.. ...|...|..+.+||-.+. +. .....+ .
T Consensus 706 ~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~---Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ 782 (1176)
T KOG1248|consen 706 FQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL---KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAI 782 (1176)
T ss_pred HhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc---ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHH
Confidence 887777777777777777776543 11111111122 22222 3445556777778877776 22 222222 4
Q ss_pred HHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcC
Q 046316 611 ASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGG 690 (966)
Q Consensus 611 ~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~ 690 (966)
.+-+++.|..-+.++.+ ..+...+--++.++..-...+....+..++..+.-.+ .+..+++...|+..++.++...
T Consensus 783 lnefl~~Isagl~gd~~---~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 783 LNEFLSIISAGLVGDST---RVVASDIVAITHILQEFKNILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred HHHHHHHHHhhhcccHH---HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcC
Confidence 44555555544443321 2222224444555544333343444444455555554 5778999999999999999998
Q ss_pred ccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChh-hhHhHHHHHHHHHHHHHHhhh
Q 046316 691 RQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQ-MAQHIRDLVAALVRRLQSAQI 763 (966)
Q Consensus 691 ~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~-l~~~l~~iL~a~~~rL~~~~~ 763 (966)
++..+ .++++.+|.-+.+++.. ..-.-...+..|+.-+++++|-+ +..++|.-..-.+.++...+.
T Consensus 859 pe~~l------~~~~~~LL~sll~ls~d-~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~r~ 925 (1176)
T KOG1248|consen 859 PEECL------SPHLEELLPSLLALSHD-HKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKRRR 925 (1176)
T ss_pred CHHHH------hhhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 88776 36777888877776653 23345568899999999999975 788888666666666655443
No 30
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00012 Score=89.78 Aligned_cols=325 Identities=14% Similarity=0.151 Sum_probs=185.0
Q ss_pred chhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC------hhH
Q 046316 412 VWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS------DGV 485 (966)
Q Consensus 412 ~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~------~~~ 485 (966)
.-|.-|-+|-|-+|.++..-. -.+++++.+.|+..+.-.-++.+-++..- .+-|-..++ .++
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~---------~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM---~sIW~~Li~D~k~~vd~y 1036 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAG---------EKLEPYLKKLIPRLYRYQYDPDKKVQDAM---TSIWNALITDSKKVVDEY 1036 (1702)
T ss_pred chhhcccchhhchHHHHHHHH---------HhhhhHHHHhhHHHhhhccCCcHHHHHHH---HHHHHHhccChHHHHHHH
Confidence 358999999999999987532 23677888887655442235555565542 233332222 256
Q ss_pred HHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhH---HHHHHHHHHHH---
Q 046316 486 LEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETL---HLVLETLQAAI--- 559 (966)
Q Consensus 486 ~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l---~~~le~l~~~i--- 559 (966)
+..+++.++..|. +..-+||.++|.|+..+++..+.+.+...+|.+-..++..+.+..+.+. .....++..++
T Consensus 1037 ~neIl~eLL~~lt-~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1037 LNEILDELLVNLT-SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred HHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6666777777766 3467999999999999998866677888999999999999987766432 23334443332
Q ss_pred hh-c-c-hhhcccccchHHHHHHHHhhc--CChhHHHHHHHHHHHHHc-CCCcHHHHHHhhhcchHhhhcCCCCCCch--
Q 046316 560 KA-G-F-LTASMEPMISPLILNIWALHV--SDPFISIDAIEVLEAIKC-SPGCIHQLASRILPYVGPILNNPQQQPDG-- 631 (966)
Q Consensus 560 ~~-~-~-~~~~~~~~l~p~~l~l~~~~~--~d~~~~~~~~~~l~~l~~-~~~~~~~l~~~~lP~l~~~l~~~~~~~~~-- 631 (966)
+. . + ....+.+.+.|+++ .+.. +=+.+|..++..+-.|.. .+....++..+++|.+..++..-..+...
T Consensus 1116 ~d~~~~~~~~~~l~~iLPfLl---~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLL---DEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred cccCCcccHHHHHHHHHHHHh---ccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHH
Confidence 21 1 1 22233344556554 4453 334678888888888884 47788899999999999988754332211
Q ss_pred ------hhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchH
Q 046316 632 ------LVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTM 705 (966)
Q Consensus 632 ------~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l 705 (966)
.-.+++|-+..=.-. +.||++.+ -.|+ +--|..++...++-+...++.+-.. ...-+.
T Consensus 1193 s~r~~~~e~ealDt~R~s~ak-sspmmeTi--------~~ci-~~iD~~vLeelip~l~el~R~sVgl------~Tkvg~ 1256 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAK-SSPMMETI--------NKCI-NYIDISVLEELIPRLTELVRGSVGL------GTKVGC 1256 (1702)
T ss_pred HHhhhhhHHHHHHHHHHhhhc-CCcHHHHH--------HHHH-HhhhHHHHHHHHHHHHHHHhccCCC------CcchhH
Confidence 112344433322211 23566651 2222 2335667777777777777654321 001122
Q ss_pred HHH-HHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 046316 706 RSL-LDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIF 774 (966)
Q Consensus 706 ~~i-l~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vf 774 (966)
..+ ..+..|+...-.. ++|+|+-.++--+.+ -.+.+...+..+...|.....+.-.++++..+
T Consensus 1257 A~fI~~L~~r~~~emtP-----~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~Ss~dq~qKLie~~ 1320 (1702)
T KOG0915|consen 1257 ASFISLLVQRLGSEMTP-----YSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFSSPDQMQKLIETL 1320 (1702)
T ss_pred HHHHHHHHHHhccccCc-----chhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 222 2223343332222 556666555544433 23344444444444444443343334444433
No 31
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.29 E-value=0.048 Score=71.98 Aligned_cols=605 Identities=12% Similarity=0.090 Sum_probs=303.8
Q ss_pred HHHHHHHHHHhcCC--CHHHhHHHHHHHHhhccCc------------HHHHHHHHhhhcccccccc----ccCCCCChHH
Q 046316 12 QQWLLNCLSATLDP--NQEVRSFAEVSLNQASLQP------------AAVLLKHFIKKHWQEGEES----FELPAVSSEE 73 (966)
Q Consensus 12 ~~~l~~~L~~~ls~--d~~~R~~AE~~L~~~~~~p------------A~i~LKn~I~~~W~~~~~~----~~~~~i~~~~ 73 (966)
...+..++...-+. ..+.|++|-.+|..+.+.. |.=.|=..+...=...... ...-...++.
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 44555555555433 5688888888888777652 1111222221100000000 0000123333
Q ss_pred HHHHHH-----HHHHHhhhchHHHHHHHHHHHHHHHhccC-CCCc------cchHHHHHHHhcccCchh--hHhHHHHHH
Q 046316 74 KEVIRK-----LLLSSLDDTHRKICTAISMAVASIAAYDW-PEDW------PDLLPFLLKLITDQSNMN--GVHGGLRCL 139 (966)
Q Consensus 74 K~~IR~-----~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~-P~~W------P~Ll~~L~~~l~s~~~~~--~~~~aL~~L 139 (966)
|..|.. -|+.+|.+.+...|..++.+|..|+...- .+.| ++.+|.|+..+++++..+ ....+..+|
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL 171 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 433322 34556677788999999999999997531 2334 678899999998752111 122345667
Q ss_pred HHHHhhccccchhh-hhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHH
Q 046316 140 ALLSADLDDAIVPK-LVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFS 218 (966)
Q Consensus 140 ~~l~~~l~~~~~~~-i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~ 218 (966)
..++..-... -.. +-...+|.+..++++.+ ..++..|+.++..... .........+.. .-++.++
T Consensus 172 ~nLs~~~en~-~~~IIeaGaVp~LV~LLsS~d---~~lQ~eAa~aLa~Las-------s~ee~~~aVIea---GaVP~LV 237 (2102)
T PLN03200 172 RNLCGSTDGF-WSATLEAGGVDILVKLLSSGN---SDAQANAASLLARLMM-------AFESSISKVLDA---GAVKQLL 237 (2102)
T ss_pred HHHhcCccch-HHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHc-------CChHHHHHHHHC---CCHHHHH
Confidence 7776533211 011 12336788888887643 4555555554332211 001111111111 2245677
Q ss_pred HHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhH--HHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCC
Q 046316 219 IILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFL--VVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDG 296 (966)
Q Consensus 219 ~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~--~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g 296 (966)
++|... .+..+|.++.-+|..+...-++. +..+. .-++.+.+.+..-. ...+. |
T Consensus 238 ~LL~sg------~~~~VRE~AA~AL~nLAs~s~e~-r~~Iv~aGgIp~LI~lL~sp~----~e~~~-------------~ 293 (2102)
T PLN03200 238 KLLGQG------NEVSVRAEAAGALEALSSQSKEA-KQAIADAGGIPALINATVAPS----KEFMQ-------------G 293 (2102)
T ss_pred HHHccC------CChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHHhCcc----hhhhc-------------c
Confidence 777642 12357888888887777532221 11110 11222222211100 00000 0
Q ss_pred CccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHH-H---HHHHhhCHHHHhhcccCC-c--cchh
Q 046316 297 AEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQ-Q---IHIWSIDANQFLADEDES-T--YSCR 369 (966)
Q Consensus 297 ~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~e-d---~e~w~~Dp~~fv~de~d~-~--~s~R 369 (966)
+ .+ ..+..++.-.+.++++... .+-+.+.+++ .-..+ . ...|.-.+--.+.+..++ . ...|
T Consensus 294 ~-~~-~~Lqe~AvwALsNIcgg~~---~ll~~L~~ll-------~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~ 361 (2102)
T PLN03200 294 E-FA-QALQENAMGALANICGGMS---ALILYLGELS-------ESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPT 361 (2102)
T ss_pred c-cc-hHHHHHHHHHHHHHhCCch---hhHHHHHHhh-------cccchHHHHHHHHhhHHHHHHhcCCchhhhhhcccc
Confidence 0 01 3566778888888776431 1112221111 11100 0 011221111111111111 0 1111
Q ss_pred hHHHHHHHHHHHHhChhh-HHHHHHHH---------HHHHHHHHHHHh---cCCCchhHHHHHHHHHHHhhHHHHHHhHh
Q 046316 370 VSGALLLEEVVSYCGREG-IDAIIDAA---------SKRFNESQQEKA---AGSTVWWRMREATLFALAFLSEQLLEAEV 436 (966)
Q Consensus 370 ~aa~~lL~~L~~~~~~~~-~~~l~~~i---------~~~l~~~~~~~~---~~~~~~w~~rEaaL~alg~l~~~l~~~~~ 436 (966)
.+...|..|+++..... ...+.+.+ .+.+.+....+. .-....-..++.+..++..++++-.+...
T Consensus 362 -~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~ 440 (2102)
T PLN03200 362 -VIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWE 440 (2102)
T ss_pred -ccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 23344556655432211 12222222 112221100000 00001125677777777776632111000
Q ss_pred cCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHH-----HHHHHHHHhhhcCCCCCcEehhHHH
Q 046316 437 SGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVL-----EHFLSAAITTIAMDVPPPVKVGACR 511 (966)
Q Consensus 437 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~-----~~~l~~~~~~L~~~~~~~Vr~~A~~ 511 (966)
. ...-..-+.|. ..+. ++.+-.|..|+|+++.++..-+ +.. ...++.+++.|.+. +..+|..|+.
T Consensus 441 a-Ii~~ggIp~LV----~LL~---s~s~~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL~s~-~~~iqeeAaw 510 (2102)
T PLN03200 441 A-LGGREGVQLLI----SLLG---LSSEQQQEYAVALLAILTDEVD-ESKWAITAAGGIPPLVQLLETG-SQKAKEDSAT 510 (2102)
T ss_pred H-HHHcCcHHHHH----HHHc---CCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHH
Confidence 0 00000111122 2343 5678899999999999875422 112 13466777777643 6789999999
Q ss_pred HHHhhcccCCCCCccccHH--HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhH
Q 046316 512 ALSELLPKANKGNFQPQMM--GLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFI 589 (966)
Q Consensus 512 al~~~~~~~~~~~l~p~l~--~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~ 589 (966)
||.+++.+. +..+..+. ..+..|++++...+.+....++.+|...+.... ....+.+..++ ...++..
T Consensus 511 AL~NLa~~~--~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d------~~~I~~Lv~LL--lsdd~~~ 580 (2102)
T PLN03200 511 VLWNLCCHS--EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD------AATISQLTALL--LGDLPES 580 (2102)
T ss_pred HHHHHhCCc--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc------hhHHHHHHHHh--cCCChhH
Confidence 999998642 12222221 345667777877777788888888887765322 12225555553 3455666
Q ss_pred HHHHHHHHHHHHcCCCcHHH-----HHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHH
Q 046316 590 SIDAIEVLEAIKCSPGCIHQ-----LASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVI 664 (966)
Q Consensus 590 ~~~~~~~l~~l~~~~~~~~~-----l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~ 664 (966)
...+.+.+..+.+..+.... .....+|.+...++++. ......|..++..+..+.+..--..+....+|+++
T Consensus 581 ~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs---~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV 657 (2102)
T PLN03200 581 KVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK---EETQEKAASVLADIFSSRQDLCESLATDEIINPCI 657 (2102)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH
Confidence 66667777766654332211 12468899999998653 24567788888888876543323333456789999
Q ss_pred HHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 665 RIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 665 ~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
.++. +.+.++...+..+|.++...+.
T Consensus 658 ~LLs-s~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 658 KLLT-NNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred HHHh-cCChHHHHHHHHHHHHHHhCCC
Confidence 9885 5567788999999999887543
No 32
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.25 E-value=4.8e-07 Score=77.12 Aligned_cols=53 Identities=43% Similarity=0.564 Sum_probs=45.0
Q ss_pred HHHHHHhhccC-c----------------------HHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHhh
Q 046316 33 AEVSLNQASLQ-P----------------------AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLD 86 (966)
Q Consensus 33 AE~~L~~~~~~-p----------------------A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L~ 86 (966)
||++|++++.+ | |+++|||+|+++|+... ...++.+++++|..||+.|+++|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~-~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSK-QKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHH-HHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhh-ccCCCCCCHHHHHHHHHHHHHHHc
Confidence 67788877777 7 99999999999999654 445567999999999999999874
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=98.10 E-value=0.024 Score=68.85 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCcc--chHHHHHHHhcccCchhhHhHHHHHHHHHHhh
Q 046316 76 VIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWP--DLLPFLLKLITDQSNMNGVHGGLRCLALLSAD 145 (966)
Q Consensus 76 ~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP--~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~ 145 (966)
.+-..+.+++.++++-||+.++.|+.+|-+.+ |+.-+ ++++.|..+|.++ |+..+.+|+.+|.++.+.
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCC-CccHHHHHHHHHHHHHHh
Confidence 34444555667889999999999999997755 65433 4678888888874 899999999999999764
No 34
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.056 Score=62.52 Aligned_cols=299 Identities=17% Similarity=0.192 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccchHHHHHHH-hcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcC
Q 046316 90 RKICTAISMAVASIAAYDWPEDWPDLLPFLLKL-ITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSF 168 (966)
Q Consensus 90 ~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~-l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~ 168 (966)
+--+..++|.-+.=+-+++-+.- .|...++.. +.| ++...+--||..|+.|.. +.++..+-+-++.++++
T Consensus 85 k~~~krigylaa~qSf~~~tdvl-mL~tn~~rkdl~S-~n~ye~giAL~GLS~fvT-------pdLARDLa~Dv~tLL~s 155 (877)
T KOG1059|consen 85 KFQQKRIGYLAASQSFHDDTDVL-MLTTNLLRKDLNS-SNVYEVGLALSGLSCIVT-------PDLARDLADDVFTLLNS 155 (877)
T ss_pred hhHHHHHhHHHHHHhhcCCccHH-HHHHHHHHHHhcc-CccchhhheecccccccC-------chhhHHHHHHHHHHHhc
Confidence 34445555544444444433211 233333332 334 354555556666665543 34566677777788876
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 046316 169 PESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQ 248 (966)
Q Consensus 169 ~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~ 248 (966)
. .+.+|.+|+-+.+.++.. | ++.+.+.|+. +..-|+.| +-++...++..+..+.+
T Consensus 156 s---kpYvRKkAIl~lykvFLk-------Y----PeAlr~~Fpr----L~EkLeDp-------Dp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 156 S---KPYVRKKAILLLYKVFLK-------Y----PEALRPCFPR----LVEKLEDP-------DPSVVSAAVSVICELAR 210 (877)
T ss_pred C---chHHHHHHHHHHHHHHHh-------h----hHhHhhhHHH----HHHhccCC-------CchHHHHHHHHHHHHHh
Confidence 5 367998887776655532 2 3334444443 44445443 34688999999999999
Q ss_pred hcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhc-ChhHHHHHHH
Q 046316 249 NFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVG-SAKLVKVIAS 327 (966)
Q Consensus 249 ~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~-~~~~~~~l~~ 327 (966)
+-|+..-+..+.|+. ++ + +++..| +++.++.++..+.- .|+..+-+.+
T Consensus 211 KnPknyL~LAP~ffk----ll-----------t-----------tSsNNW-----mLIKiiKLF~aLtplEPRLgKKLie 259 (877)
T KOG1059|consen 211 KNPQNYLQLAPLFYK----LL-----------V-----------TSSNNW-----VLIKLLKLFAALTPLEPRLGKKLIE 259 (877)
T ss_pred hCCcccccccHHHHH----HH-----------h-----------ccCCCe-----ehHHHHHHHhhccccCchhhhhhhh
Confidence 999854444333332 11 1 122233 45677777777642 2333322212
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHh
Q 046316 328 NVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKA 407 (966)
Q Consensus 328 ~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 407 (966)
-+-+++. +++|..+|-++.... ... .+.+
T Consensus 260 plt~li~----------------------------------sT~AmSLlYECvNTV--------Va~---s~s~------ 288 (877)
T KOG1059|consen 260 PITELME----------------------------------STVAMSLLYECVNTV--------VAV---SMSS------ 288 (877)
T ss_pred HHHHHHH----------------------------------hhHHHHHHHHHHHHh--------eee---hhcc------
Confidence 2222221 456666665443321 110 1111
Q ss_pred cCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHH
Q 046316 408 AGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLE 487 (966)
Q Consensus 408 ~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~ 487 (966)
|-++ .+|+..+ +... +..|+ .++.+-||+-+|.++++.....+ ...+
T Consensus 289 -g~~d----~~asiqL---CvqK-------------Lr~fi-----------edsDqNLKYlgLlam~KI~ktHp-~~Vq 335 (877)
T KOG1059|consen 289 -GMSD----HSASIQL---CVQK-------------LRIFI-----------EDSDQNLKYLGLLAMSKILKTHP-KAVQ 335 (877)
T ss_pred -CCCC----cHHHHHH---HHHH-------------Hhhhh-----------hcCCccHHHHHHHHHHHHhhhCH-HHHH
Confidence 1111 1111111 0000 11111 15667788888888888876643 4566
Q ss_pred HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcCh
Q 046316 488 HFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARD 545 (966)
Q Consensus 488 ~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~ 545 (966)
..-+.++.||. |.+..+|+.|..-+...+.. ..+..|++.|+.-+..++.
T Consensus 336 a~kdlIlrcL~-DkD~SIRlrALdLl~gmVsk-------kNl~eIVk~LM~~~~~ae~ 385 (877)
T KOG1059|consen 336 AHKDLILRCLD-DKDESIRLRALDLLYGMVSK-------KNLMEIVKTLMKHVEKAEG 385 (877)
T ss_pred HhHHHHHHHhc-cCCchhHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhccc
Confidence 77778888876 55788888888877777643 3345555555555544443
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.82 E-value=0.0084 Score=70.56 Aligned_cols=227 Identities=19% Similarity=0.289 Sum_probs=151.1
Q ss_pred HHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh--h--HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCC--CCC
Q 046316 451 MITEDIGTGVHQYPFLYARIFASVARFSSAISD--G--VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKAN--KGN 524 (966)
Q Consensus 451 ~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~--~--~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~--~~~ 524 (966)
++...+. +++|.+|.-+++.+++....-.. + .-..++..++.+|. +.+..|...|+.+|..++.... ...
T Consensus 81 ~L~~gL~---h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 81 FLQRGLT---HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 3334454 89999999999999998765321 1 12357888889987 4477888899999999987531 112
Q ss_pred ccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcc--cccchHHHHHHHHhhcCChhHHHHHHHHHHHHHc
Q 046316 525 FQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASM--EPMISPLILNIWALHVSDPFISIDAIEVLEAIKC 602 (966)
Q Consensus 525 l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~--~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~ 602 (966)
+.+.. +..|.+++...++.....++|.++.+.+.++.+..+ ...+.+.+++- .+ .+|..++..+.+++..|+.
T Consensus 157 ~~~~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~e-L~-~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 157 FDSNL---LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKE-LD-SDDILVQLNALELLSELAE 231 (503)
T ss_pred hCcch---HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHH-hc-CccHHHHHHHHHHHHHHHc
Confidence 23332 678888888877778899999999998876622222 22356666665 22 3888999999999999998
Q ss_pred CCCcHHHHHH-hhhcchHhhhcCCCCCC---chhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhh
Q 046316 603 SPGCIHQLAS-RILPYVGPILNNPQQQP---DGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQN 678 (966)
Q Consensus 603 ~~~~~~~l~~-~~lP~l~~~l~~~~~~~---~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~ 678 (966)
.+..+.-+.+ -+++.|...+.+...+. .-++...+.+.+.+....|...... +..++..+++++ .+.|......
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~-~p~~~~~l~~~~-~s~d~~~~~~ 309 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL-YPAFLERLFSML-ESQDPTIREV 309 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH-HHHHHHHHHHHh-CCCChhHHHH
Confidence 7665554444 47788888887554332 2234555667777766544433332 222333444433 5778888888
Q ss_pred hHHHHHHHHh
Q 046316 679 ATECLATFIS 688 (966)
Q Consensus 679 ~~~~l~~~i~ 688 (966)
|.+++..+-+
T Consensus 310 A~dtlg~igs 319 (503)
T PF10508_consen 310 AFDTLGQIGS 319 (503)
T ss_pred HHHHHHHHhC
Confidence 8888887654
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.71 E-value=0.015 Score=68.49 Aligned_cols=238 Identities=14% Similarity=0.138 Sum_probs=145.5
Q ss_pred HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh-hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCC
Q 046316 445 GELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD-GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKG 523 (966)
Q Consensus 445 ~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~-~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~ 523 (966)
+.+-.+++...++ +..+=.-.-+|-++.++.....+ ....++.+.+..+|.++ +..||..|++++.+.+++.. .
T Consensus 36 ~~~~~~~lf~~L~---~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~-~ 110 (503)
T PF10508_consen 36 ERLPEPVLFDCLN---TSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSE-G 110 (503)
T ss_pred HhchHHHHHHHHh---hcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCH-H
Confidence 3444444555565 22222234567788888777654 45777888888888754 67999999999999887631 1
Q ss_pred Cccc-cHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046316 524 NFQP-QMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIK 601 (966)
Q Consensus 524 ~l~p-~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~ 601 (966)
..+- .-..++..+..++.+.+.++-..++.+|..+.+... ...-+.+.+.+.+-++ ... .+..+|..+.+++..++
T Consensus 111 ~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l-~~~-~~~~vR~Rv~el~v~i~ 188 (503)
T PF10508_consen 111 AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSL-MSQ-SSDIVRCRVYELLVEIA 188 (503)
T ss_pred HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHH-Hhc-cCHHHHHHHHHHHHHHH
Confidence 1110 113466788888888888888888888888876543 2211122233444444 222 36678888999999888
Q ss_pred cCCCcHHHHHHh--hhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHH-HHhHHHHHHHhccCchH----
Q 046316 602 CSPGCIHQLASR--ILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYD-VCFDAVIRIILQSEDHS---- 674 (966)
Q Consensus 602 ~~~~~~~~l~~~--~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~-~~fp~l~~~l~~s~d~~---- 674 (966)
+.......++.. +++.+...+.+++ .-+.-.++++++.+.+ .+.+ ...+.. .+++.|.+++..+.+..
T Consensus 189 ~~S~~~~~~~~~sgll~~ll~eL~~dD---iLvqlnalell~~La~-~~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~ 263 (503)
T PF10508_consen 189 SHSPEAAEAVVNSGLLDLLLKELDSDD---ILVQLNALELLSELAE-TPHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSS 263 (503)
T ss_pred hcCHHHHHHHHhccHHHHHHHHhcCcc---HHHHHHHHHHHHHHHc-ChhH-HHHHHhCCHHHHHHHHHhccccCCcccc
Confidence 664444445544 7777777776632 2334589999999998 3432 222222 36888888887543322
Q ss_pred -HhhhhHHHHHHHHhcCccce
Q 046316 675 -EMQNATECLATFISGGRQLM 694 (966)
Q Consensus 675 -~lq~~~~~l~~~i~~~~~~~ 694 (966)
++...+..+.++....+.++
T Consensus 264 ~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 264 LLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred hhhhhHHHHHHHHHhcChHHH
Confidence 33334455555555444444
No 37
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.035 Score=63.60 Aligned_cols=395 Identities=15% Similarity=0.144 Sum_probs=202.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCC----CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccc
Q 046316 75 EVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWP----EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAI 150 (966)
Q Consensus 75 ~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P----~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~ 150 (966)
..+-..+++.+..+...=|..+++.++.+..- ++ .+|+ ++..+...+.+..+.....+++.++...+..+. ..
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g-~~i~~~~~~~-~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~ 209 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNG-LGIESLKEFG-FLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PP 209 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcC-cHHhhhhhhh-HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CC
Confidence 44455555555555555555566655544331 11 2454 667777777654333344467777777777776 34
Q ss_pred hhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCC
Q 046316 151 VPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDP 230 (966)
Q Consensus 151 ~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~ 230 (966)
+.+....++|.++.-+.+.. ..+|..|....+++...+. ...++.++.+.+... . .
T Consensus 210 ~EPyiv~~lp~il~~~~d~~---~~Vr~Aa~~a~kai~~~~~------~~aVK~llpsll~~l-------~--------~ 265 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKI---NKVREAAVEAAKAIMRCLS------AYAVKLLLPSLLGSL-------L--------E 265 (569)
T ss_pred CCchHHhhHHHHHHHhhccc---hhhhHHHHHHHHHHHHhcC------cchhhHhhhhhHHHH-------H--------H
Confidence 56666777777777765543 4566665554444433221 112444443333322 1 1
Q ss_pred ChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHH
Q 046316 231 DDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFE 310 (966)
Q Consensus 231 ~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~e 310 (966)
..|.-|+.+++.+.-+...-|+.+.-.++.+++-+.+.+. |.. ..+.+-.+.++.
T Consensus 266 ~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~----------------------DT~---~evr~a~~~~l~ 320 (569)
T KOG1242|consen 266 AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW----------------------DTK---PEVRKAGIETLL 320 (569)
T ss_pred HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc----------------------cCC---HHHHHHHHHHHH
Confidence 2488899999999988888888777777776664433332 211 001222333333
Q ss_pred HHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHH-HHhhCHHHHhh-------------cccCCccchhhHHHHHH
Q 046316 311 FLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIH-IWSIDANQFLA-------------DEDESTYSCRVSGALLL 376 (966)
Q Consensus 311 fl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e-~w~~Dp~~fv~-------------de~d~~~s~R~aa~~lL 376 (966)
=+..+++++. +.++++.++..+-+--+-+++-.+ +...-+..||. .-.+-+.+.++.+...+
T Consensus 321 ~~~svidN~d----I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 321 KFGSVIDNPD----IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHhhccHH----HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 3334444443 344555555554422222222221 11222222221 11122344555666667
Q ss_pred HHHHHHhCh-hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccc-cHHHHHHHHHhh
Q 046316 377 EEVVSYCGR-EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSV-RLGELLEQMITE 454 (966)
Q Consensus 377 ~~L~~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~-~~~~~l~~~i~~ 454 (966)
+-++.-..+ ..+.++++.+..-+..... +. -.-.|+-+.+|+|.+-++.... .| +..+.+....
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~-----d~-~PEvR~vaarAL~~l~e~~g~~------~f~d~~p~l~e~~-- 462 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLD-----DA-VPEVRAVAARALGALLERLGEV------SFDDLIPELSETL-- 462 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhc-----CC-ChhHHHHHHHHHHHHHHHHHhh------cccccccHHHHhh--
Confidence 777766632 2234444444444433211 22 3578999999999997765322 12 1222222211
Q ss_pred hhcCCCCCChhH--HHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCC-CCcEehhHHHHHHhhcccCCCCCccccHHH
Q 046316 455 DIGTGVHQYPFL--YARIFASVARFSSAISDGVLEHFLSAAITTIAMDV-PPPVKVGACRALSELLPKANKGNFQPQMMG 531 (966)
Q Consensus 455 ~l~~~~~~~~~L--r~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~-~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~ 531 (966)
..+..+ |.-+...++........+....++..++....... +..+| .....+-.+........++||+.+
T Consensus 463 ------~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~-dg~~~~~~~lp~~~~~~~~~yi~~ 535 (569)
T KOG1242|consen 463 ------TSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIR-DGVIWLFYLLPYIFGFQFQPYIHE 535 (569)
T ss_pred ------ccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhc-cCeeehhhccchhhhHHhHHHHHH
Confidence 222222 33344555555555555566666666666644321 22232 233344444544445678899999
Q ss_pred HHHHHHHHHhhcChh
Q 046316 532 LFSSLADLLHQARDE 546 (966)
Q Consensus 532 il~~L~~ll~~~~~d 546 (966)
++..+++-+...++.
T Consensus 536 i~~~~~k~~ad~de~ 550 (569)
T KOG1242|consen 536 ILDEFLKGLADNDEK 550 (569)
T ss_pred HHHHHHHHhhhcCCc
Confidence 888888887754443
No 38
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.60 E-value=0.0044 Score=71.47 Aligned_cols=299 Identities=16% Similarity=0.166 Sum_probs=160.9
Q ss_pred CChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHh
Q 046316 462 QYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLH 541 (966)
Q Consensus 462 ~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~ 541 (966)
..+-.+.=|..+|++|...+| ++..+.+.+.+.... |.+..||+.|+++|..+|.+. ..++..+...|.++++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~-----~~~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCE-DEDVQIRKQAIKGLPQLCKDN-----PEHVSKVADVLVQLLQ 106 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T-------T-HHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHh-cccHHHHHHHHHhHHHHHHhH-----HHHHhHHHHHHHHHHh
Confidence 456678888899999999885 567788888888755 558889999999999999763 3477788899999999
Q ss_pred hcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHH-HHHHcCCCcH----HHHHHhhhc
Q 046316 542 QARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVL-EAIKCSPGCI----HQLASRILP 616 (966)
Q Consensus 542 ~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l-~~l~~~~~~~----~~l~~~~lP 616 (966)
..+...+..|=.+|...++.|+.. .+..+.-++-.....|..+|..++..+ +.+...+..+ ...++.++-
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k~-----tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~ 181 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPKG-----TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVD 181 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHH
Confidence 777677888888898888887611 233333344222356777887777655 3344554433 237777788
Q ss_pred chHhhhcCCCCCCchhhHHHHHHHHHHhh---cCChhHHHHHHHHHhHHHHHHHh-----ccCchHHhhhhHHHHHHHHh
Q 046316 617 YVGPILNNPQQQPDGLVAGSLDLLTMLLK---SASTDVVKAAYDVCFDAVIRIIL-----QSEDHSEMQNATECLATFIS 688 (966)
Q Consensus 617 ~l~~~l~~~~~~~~~~~~~al~ll~~l~~---~~~~~l~~~~~~~~fp~l~~~l~-----~s~d~~~lq~~~~~l~~~i~ 688 (966)
.+.++|+.- + .......+++|..+=- ..+..- ...++..+..... ...|.+.+...+.|+..=+-
T Consensus 182 ~ikkvL~DV-T--aeEF~l~m~lL~~lk~~~~~~t~~g----~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp 254 (556)
T PF05918_consen 182 EIKKVLQDV-T--AEEFELFMSLLKSLKIYGGKQTIEG----RQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALP 254 (556)
T ss_dssp HHHHHCTT-----HHHHHHHHHHHHTSGG---GSSHHH----HHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhc-c--HHHHHHHHHHHHhCccccccCChHH----HHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhH
Confidence 888888641 1 1233444555555433 122111 1223344443331 24466677766666665222
Q ss_pred cCccceeeeccCCcchHHHHHHHHH-hhcCCC---CCCccccchHHHHHHHHHhCChh-hhHhHHHHHHHHHHHHHHhh-
Q 046316 689 GGRQLMLVWGGDSGFTMRSLLDAAS-RLLNPD---LESSGSLFVGSYILQLILHLPSQ-MAQHIRDLVAALVRRLQSAQ- 762 (966)
Q Consensus 689 ~~~~~~~~~~~~~~~~l~~il~i~~-~lL~~~---~~~~~~~~vg~Lv~~li~~~~~~-l~~~l~~iL~a~~~rL~~~~- 762 (966)
. |. . +..-..++.++. ++| |. +.+......-+++..+...++.. ....++.|...+...+=..+
T Consensus 255 ~----fs----~-~v~Sskfv~y~~~kvl-P~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~ 324 (556)
T PF05918_consen 255 F----FS----R-GVSSSKFVNYMCEKVL-PKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKT 324 (556)
T ss_dssp G-----B----T-TB--HHHHHHHHHHTC-CCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-----
T ss_pred H----hc----C-CCChHHHHHHHHHHhc-CChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCC
Confidence 2 11 1 111234445444 443 33 33344555566666666565532 24455555554443333222
Q ss_pred h----HHHHHHHHHHHHHHHhhcCCCHHHHHHHhh
Q 046316 763 I----AGLRSSLLLIFARLVHMSAPNVEWFINMLM 793 (966)
Q Consensus 763 ~----~~~~~~li~vfa~l~~~~~~~~~~~l~~L~ 793 (966)
. -+.+..|+..|.+|... .|+ ..++|+
T Consensus 325 ~~~l~fs~vEcLL~afh~La~k---~p~-~~~~lC 355 (556)
T PF05918_consen 325 EPKLQFSYVECLLYAFHQLARK---SPN-SLNFLC 355 (556)
T ss_dssp -----HHHHHHHHHHHHHHHTT----TH-HHH---
T ss_pred CCcccchHhhHHHHHHHHHhhh---Ccc-hhhhHh
Confidence 2 35667788889998888 666 456664
No 39
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.061 Score=65.88 Aligned_cols=186 Identities=18% Similarity=0.176 Sum_probs=127.0
Q ss_pred cchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHH
Q 046316 366 YSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLG 445 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~ 445 (966)
...|..+..+|..|.+..+.+....+...|.+.+-.... -+...-+.+.++|+-+|.+.....+..+ ...-.++
T Consensus 711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke----~n~~aR~~Af~lL~~i~~i~~~~d~g~e--~~~~~ln 784 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKE----VNVKARRNAFALLVFIGAIQSSLDDGNE--PASAILN 784 (1176)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc----ccHHHHhhHHHHHHHHHHHHhhhccccc--chHHHHH
Confidence 566888888999999988866666666666665544311 1222335667788878754333222111 0012366
Q ss_pred HHHHHHHhhhhcCCCCCChhHHHHHHHHHH----HhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCC
Q 046316 446 ELLEQMITEDIGTGVHQYPFLYARIFASVA----RFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKAN 521 (966)
Q Consensus 446 ~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~----~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~ 521 (966)
.|+..+. ..+- ...+.++++.+..++ .|...++.+.+.++++.+..+|.+. ..-++.+|+..++.++...+
T Consensus 785 efl~~Is-agl~---gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 785 EFLSIIS-AGLV---GDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFP 859 (1176)
T ss_pred HHHHHHH-hhhc---ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCC
Confidence 7776443 3332 456677777444444 4445567788999999998888744 67788999999999998777
Q ss_pred CCCccccHHHHHHHHHHHHhhcChhh---HHHHHHHHHHHHhhc
Q 046316 522 KGNFQPQMMGLFSSLADLLHQARDET---LHLVLETLQAAIKAG 562 (966)
Q Consensus 522 ~~~l~p~l~~il~~L~~ll~~~~~d~---l~~~le~l~~~i~~~ 562 (966)
...++|+++.++..++.++.+..... ...++|.++..+|.+
T Consensus 860 e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 860 EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 78899999999999999998876653 456789999988874
No 40
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.027 Score=63.34 Aligned_cols=203 Identities=18% Similarity=0.240 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChh--hHHHHHHHHHHHHhh
Q 046316 484 GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDE--TLHLVLETLQAAIKA 561 (966)
Q Consensus 484 ~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d--~l~~~le~l~~~i~~ 561 (966)
.+...++.-++.|+. |++..||..||.++.+.+.-. +..+.+|.+.|+..++++..+.+.. .-..+++.+..-+-.
T Consensus 80 ~Y~~~iv~Pv~~cf~-D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFS-DQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhcc-CccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcc
Confidence 367788888889976 668899999999999988764 4567788999999999999877663 334444444333221
Q ss_pred cchhhcc-cccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCC-cHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHH
Q 046316 562 GFLTASM-EPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPG-CIHQLASRILPYVGPILNNPQQQPDGLVAGSLDL 639 (966)
Q Consensus 562 ~~~~~~~-~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~-~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~l 639 (966)
.. ++.+ .++++|++-... +..+|+.|..+++.+..|-+.|+ .+-.+...+++-+...+..+..+.-.+.+.++.=
T Consensus 158 e~-~~tFsL~~~ipLL~eri--y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 158 ES-ASTFSLPEFIPLLRERI--YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cc-ccccCHHHHHHHHHHHH--hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 11 1111 135566554331 46689999999999999998887 6677778888888888876543222233333322
Q ss_pred HHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCcccee
Q 046316 640 LTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLML 695 (966)
Q Consensus 640 l~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~ 695 (966)
+-.=+++.|..+ . +....+.++.-+ ++.++.+..-+..-+..|+.-++..++
T Consensus 235 fL~eI~s~P~s~-d--~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 235 FLAEIRSSPSSM-D--YDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred HHHHHhcCcccc-C--cccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 222234445332 1 111122223322 466777777777788888887665544
No 41
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.32 Score=56.03 Aligned_cols=308 Identities=12% Similarity=0.091 Sum_probs=173.4
Q ss_pred cchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHH
Q 046316 366 YSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLG 445 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~ 445 (966)
-.+|.+|.+..+.+...+....+..+++.....+.++ .||.|.|++..+|++++.- |.+++
T Consensus 230 ~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~----------kWrtK~aslellg~m~~~a---------p~qLs 290 (569)
T KOG1242|consen 230 NKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA----------KWRTKMASLELLGAMADCA---------PKQLS 290 (569)
T ss_pred hhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH----------hhhhHHHHHHHHHHHHHhc---------hHHHH
Confidence 4579999999999999998877777766555444431 4999999999999887631 23455
Q ss_pred HHHHHHHhhhhc-CCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCC-CC
Q 046316 446 ELLEQMITEDIG-TGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKAN-KG 523 (966)
Q Consensus 446 ~~l~~~i~~~l~-~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~-~~ 523 (966)
..+.++| |.+. ...+.+|-+|..+.-++-+|++.+.......+++.++.++.+.. - ++- .|+..+..... ..
T Consensus 291 ~~lp~ii-P~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~-~--~~~--e~~~~L~~ttFV~~ 364 (569)
T KOG1242|consen 291 LCLPDLI-PVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS-C--YTP--ECLDSLGATTFVAE 364 (569)
T ss_pred HHHhHhh-HHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc-c--chH--HHHHhhcceeeeee
Confidence 5566554 4444 23589999999999999999999876668999999999997431 1 111 22333332211 12
Q ss_pred CccccHHHHHHHHHHHHhhcChhhHHH---HHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHH
Q 046316 524 NFQPQMMGLFSSLADLLHQARDETLHL---VLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEA 599 (966)
Q Consensus 524 ~l~p~l~~il~~L~~ll~~~~~d~l~~---~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~ 599 (966)
+-.|-+.-++..|-+-+++-+.++... +.+-+...+. |+ ..+.|...|+|-+-.. .. ..+|..|..+.-.+..
T Consensus 365 V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve-Dp~~lapfl~~Llp~lk~~-~~-d~~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 365 VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE-DPKDLAPFLPSLLPGLKEN-LD-DAVPEVRAVAARALGA 441 (569)
T ss_pred ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc-CHHHHhhhHHHHhhHHHHH-hc-CCChhHHHHHHHHHHH
Confidence 223444444444444445544444333 3333333332 23 3333333444433322 11 1267788777666644
Q ss_pred HH-cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhh
Q 046316 600 IK-CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQN 678 (966)
Q Consensus 600 l~-~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~ 678 (966)
+. .....+. ....|.+...+..+.. ......+.+.++.++++..-+-. ....|.+..-.....+...++.
T Consensus 442 l~e~~g~~~f---~d~~p~l~e~~~~~k~--~~~~~g~aq~l~evl~~~~v~~~----~~~~~~~~a~~~~~~~~~~~~d 512 (569)
T KOG1242|consen 442 LLERLGEVSF---DDLIPELSETLTSEKS--LVDRSGAAQDLSEVLAGLGVEKV----EDILPEILANASSVLIDERIRD 512 (569)
T ss_pred HHHHHHhhcc---cccccHHHHhhccchh--hhhhHHHhhhHHHHHhcccchHH----HHHHHHHHHHHhhccchhhhcc
Confidence 44 2222211 6777888877765432 12345567777777776652221 1224444444433333334444
Q ss_pred hHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhc
Q 046316 679 ATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLL 716 (966)
Q Consensus 679 ~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL 716 (966)
+.-.+-.|+-+...... .+|+..+++-+.+-+
T Consensus 513 g~~~~~~~lp~~~~~~~------~~yi~~i~~~~~k~~ 544 (569)
T KOG1242|consen 513 GVIWLFYLLPYIFGFQF------QPYIHEILDEFLKGL 544 (569)
T ss_pred CeeehhhccchhhhHHh------HHHHHHHHHHHHHHh
Confidence 44344333332221111 457777777666544
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.49 E-value=0.25 Score=59.76 Aligned_cols=441 Identities=17% Similarity=0.169 Sum_probs=229.9
Q ss_pred HHHhHHHHHHHH-hhccCc-------HHHHHHHHhhhccccccc----ccc--CCCCC-hHHHHHHHHHHHHHhhhchHH
Q 046316 27 QEVRSFAEVSLN-QASLQP-------AAVLLKHFIKKHWQEGEE----SFE--LPAVS-SEEKEVIRKLLLSSLDDTHRK 91 (966)
Q Consensus 27 ~~~R~~AE~~L~-~~~~~p-------A~i~LKn~I~~~W~~~~~----~~~--~~~i~-~~~K~~IR~~Ll~~L~~~~~k 91 (966)
+.+|++|=+.|. -.+..| =.-+++|.....|....- -|. .+.++ +..|..+|...-++-.+..+.
T Consensus 173 t~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~ 252 (759)
T KOG0211|consen 173 TGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPM 252 (759)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchh
Confidence 455877766666 444445 345677777777764322 121 12344 667777777776677888899
Q ss_pred HHHHHHHHHHHHHhccCC-CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCCC
Q 046316 92 ICTAISMAVASIAAYDWP-EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPE 170 (966)
Q Consensus 92 Ir~~~a~~Is~Ia~~D~P-~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~ 170 (966)
+|+++|.-.+.||..--- ..|-.+++...+++.+. ....+..|...+..+.+-+.+.. .+...+++.+++...+.
T Consensus 253 Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~- 328 (759)
T KOG0211|consen 253 VRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDG- 328 (759)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcCh-
Confidence 999999999888876422 36889999999998874 34677788888888877666532 56677778887777654
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHh----------hhHHHHHHHHHHhcCCCCCCCC----------
Q 046316 171 SYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMP----------MLKPWMNHFSIILEHPVQPEDP---------- 230 (966)
Q Consensus 171 ~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~----------~l~~w~~~~~~~L~~~~~~~d~---------- 230 (966)
+..+|....+.+...-..++. ........+.+... ....-.+.|...+..+.-++..
T Consensus 329 --~~~v~~~~~~~~~~L~~~~~~-~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~ 405 (759)
T KOG0211|consen 329 --SWRVSYMVADKFSELSSAVGP-SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQV 405 (759)
T ss_pred --hHHHHHHHhhhhhhHHHHhcc-ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHH
Confidence 356666666666655444433 11111101110000 0000011111111100000000
Q ss_pred ----ChhhHHHHHHHHHHHHHHhcch--hhHHhhHHHHHH-------HHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCC
Q 046316 231 ----DDWGVKMEVLKCLNQFIQNFPS--LAESEFLVVVRS-------LWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGA 297 (966)
Q Consensus 231 ----~~~~lk~~~~~~L~~l~~~f~~--~~~~~~~~~~~~-------~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~ 297 (966)
....+|.+......-+.--+|+ .+.+..+.++.. +-..+...+..+ ..++ +..|
T Consensus 406 lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~--~~v~----------~v~g- 472 (759)
T KOG0211|consen 406 LVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL--EEVN----------DVIG- 472 (759)
T ss_pred HHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHH--Hhcc----------Cccc-
Confidence 0011222222222212111221 011111111100 000000000000 0010 1111
Q ss_pred ccchHHHHHHHHHHHHHHhcC--hhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCC-ccchhhHHHH
Q 046316 298 EKSLDSFVIQLFEFLLTIVGS--AKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDES-TYSCRVSGAL 374 (966)
Q Consensus 298 ~~~~~~l~~~~~efl~~~~~~--~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~-~~s~R~aa~~ 374 (966)
++.+....+--+....+. .+.+..+..+++.+...+ ++.++.+. -.+.++....+ .|++|.+|..
T Consensus 473 ---~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~--~~~~~~~~-------~~~l~~~~l~d~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 473 ---ISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL--GVEFFDEK-------LAELLRTWLPDHVYSIREAAAR 540 (759)
T ss_pred ---chhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh--hhHHhhHH-------HHHHHHhhhhhhHHHHHHHHHH
Confidence 122222333333333332 222222233333222221 22222222 12222222223 5999999999
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhh
Q 046316 375 LLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITE 454 (966)
Q Consensus 375 lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~ 454 (966)
.+..++..||... .....+.+.+... ++ .+|+.|=+.++++..+++.+.. ++--+.++. .+..
T Consensus 541 ~l~~l~~~~G~~w--~~~~~i~k~L~~~------~q-~~y~~R~t~l~si~~la~v~g~-------ei~~~~Llp-~~~~ 603 (759)
T KOG0211|consen 541 NLPALVETFGSEW--ARLEEIPKLLAMD------LQ-DNYLVRMTTLFSIHELAEVLGQ-------EITCEDLLP-VFLD 603 (759)
T ss_pred HhHHHHHHhCcch--hHHHhhHHHHHHh------cC-cccchhhHHHHHHHHHHHHhcc-------HHHHHHHhH-HHHH
Confidence 9999999999432 2233344444331 12 2589999999999988875421 121122221 2211
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 455 DIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 455 ~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
. ..++.|-+|-+++..+.++...+..+.....+..+...|..|++.-||..|..|+......
T Consensus 604 l---~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 604 L---VKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred h---ccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 2 2478899999999999999998877777777777777777788899999999988876544
No 43
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.19 Score=58.91 Aligned_cols=146 Identities=15% Similarity=0.218 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCc-cchHHHHHHHhcccCchhhHhHHHHHHHHHHhh--ccccchhhhhhhHHHHHHHH
Q 046316 89 HRKICTAISMAVASIAAYDWPEDW-PDLLPFLLKLITDQSNMNGVHGGLRCLALLSAD--LDDAIVPKLVPVLFPVLHTI 165 (966)
Q Consensus 89 ~~kIr~~~a~~Is~Ia~~D~P~~W-P~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~--l~~~~~~~i~~~l~p~L~~i 165 (966)
-+-+|+-+|..|++=.....+++- |-+-....+++++++|...+..+-++|...++| ++++.|.++.+.+|..++++
T Consensus 500 ~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkl 579 (978)
T KOG1993|consen 500 SRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKL 579 (978)
T ss_pred hhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHH
Confidence 378899999999988887777543 445555666777766777888999999999997 66788999999999999999
Q ss_pred hcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHH
Q 046316 166 VSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQ 245 (966)
Q Consensus 166 ~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~ 245 (966)
+..-. ...+|...+.....++.- +++.+.|+.....+.+-.+-+.. .++--++..++.+|..
T Consensus 580 l~~~~--e~Dtk~~VL~~ls~lI~r-----------~~e~I~P~~~~ivq~lp~LWe~s-----~~e~lLr~alL~~L~~ 641 (978)
T KOG1993|consen 580 LKAVE--ECDTKTSVLNLLSTLIER-----------VSEHIAPYASTIVQYLPLLWEES-----EEEPLLRCALLATLRN 641 (978)
T ss_pred HHHHh--hhhhHHHHHHHHHHHHHH-----------HHHhhhHHHHHHHHHHHHHHhhh-----ccCcHHHHHHHHHHHH
Confidence 97653 345665555555544432 44555566666666666555431 1233588999999999
Q ss_pred HHHhcch
Q 046316 246 FIQNFPS 252 (966)
Q Consensus 246 l~~~f~~ 252 (966)
+++..+.
T Consensus 642 lV~alg~ 648 (978)
T KOG1993|consen 642 LVNALGA 648 (978)
T ss_pred HHHHhcc
Confidence 9887764
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=97.45 E-value=0.55 Score=57.38 Aligned_cols=387 Identities=11% Similarity=0.110 Sum_probs=207.6
Q ss_pred hhhHHHHHHHHHHHHhChhhH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccH-H
Q 046316 368 CRVSGALLLEEVVSYCGREGI-DAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRL-G 445 (966)
Q Consensus 368 ~R~aa~~lL~~L~~~~~~~~~-~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~-~ 445 (966)
||.+|.-.+..+-+..++.+. ..+.+.+.+++.. .+....-+|+.++..+.... .. .+++ .
T Consensus 156 VRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D----------~dp~Vv~nAl~aL~eI~~~~---~~----~l~l~~ 218 (746)
T PTZ00429 156 VRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLND----------NNPVVASNAAAIVCEVNDYG---SE----KIESSN 218 (746)
T ss_pred HHHHHHHHHHHHHhhCcccccccchHHHHHHHhcC----------CCccHHHHHHHHHHHHHHhC---ch----hhHHHH
Confidence 467777777777666554321 2345555555542 12344555666655553311 00 1111 1
Q ss_pred HHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCc
Q 046316 446 ELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNF 525 (966)
Q Consensus 446 ~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l 525 (966)
..+.+. ...+. .-.++.+...+-++.+|...- .+....++..+...|++. +..|..+|++++-.+.....++.+
T Consensus 219 ~~~~~L-l~~L~---e~~EW~Qi~IL~lL~~y~P~~-~~e~~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~ 292 (746)
T PTZ00429 219 EWVNRL-VYHLP---ECNEWGQLYILELLAAQRPSD-KESAETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELI 292 (746)
T ss_pred HHHHHH-HHHhh---cCChHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHH
Confidence 122222 22222 456888888888887765432 234567888888888754 567889999999877654322222
Q ss_pred cccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCCh-hHHHHHHHHHHHHHcCC
Q 046316 526 QPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDP-FISIDAIEVLEAIKCSP 604 (966)
Q Consensus 526 ~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~-~~~~~~~~~l~~l~~~~ 604 (966)
......+-..+..| ...+.++...++..|..+....+ ..+.+. ++.|--..+|| +++...++++..|++..
T Consensus 293 ~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P------~lf~~~-~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~ 364 (746)
T PTZ00429 293 ERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP------NLLRTN-LDSFYVRYSDPPFVKLEKLRLLLKLVTPS 364 (746)
T ss_pred HHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH------HHHHHH-HHhhhcccCCcHHHHHHHHHHHHHHcCcc
Confidence 22222233444455 34556888999999987776544 122233 33332234555 67888889988887433
Q ss_pred CcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHH
Q 046316 605 GCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLA 684 (966)
Q Consensus 605 ~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~ 684 (966)
.. .. ++--+...... ....+...++.-++.+..+.+. ....|...|++++..+ .++.+.++.+++
T Consensus 365 Nv-~~----IL~EL~eYa~d---~D~ef~r~aIrAIg~lA~k~~~-----~a~~cV~~Ll~ll~~~--~~~v~e~i~vik 429 (746)
T PTZ00429 365 VA-PE----ILKELAEYASG---VDMVFVVEVVRAIASLAIKVDS-----VAPDCANLLLQIVDRR--PELLPQVVTAAK 429 (746)
T ss_pred cH-HH----HHHHHHHHhhc---CCHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHhcCC--chhHHHHHHHHH
Confidence 22 11 11112222221 1235777888888888766542 3445677777777432 345667888899
Q ss_pred HHHhcCccceeeeccCCcchHHHHHHHHHh-hcCCCCCCccc-cchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhh
Q 046316 685 TFISGGRQLMLVWGGDSGFTMRSLLDAASR-LLNPDLESSGS-LFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQ 762 (966)
Q Consensus 685 ~~i~~~~~~~~~~~~~~~~~l~~il~i~~~-lL~~~~~~~~~-~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~ 762 (966)
+++++.++. + ++..+.. +-.+...+..+ ..+.+++... +..+ +..+.+|+..+.++.. +
T Consensus 430 ~IlrkyP~~----------~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy----~~~I-~~a~~~L~~~i~~f~~-E 490 (746)
T PTZ00429 430 DIVRKYPEL----------L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEY----CDFI-ENGKDIIQRFIDTIME-H 490 (746)
T ss_pred HHHHHCccH----------H---HHHHHHHhhcccccccHHHHHHHHHHHHhh----HhhH-hhHHHHHHHHHhhhcc-C
Confidence 998874431 1 2222211 11122333322 2223444332 2222 2235666666655544 4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHHHccC
Q 046316 763 IAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTR 838 (966)
Q Consensus 763 ~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~~~ 838 (966)
.+.++-.++...++++.. +|..+-. .+..+|. |+.+. ....|.+==..-..+|++.+
T Consensus 491 ~~~VqlqlLta~vKlfl~---~p~~~~~------------~l~~vL~-~~t~~---~~d~DVRDRA~~Y~rLLs~~ 547 (746)
T PTZ00429 491 EQRVQLAILSAAVKMFLR---DPQGMEP------------QLNRVLE-TVTTH---SDDPDVRDRAFAYWRLLSKG 547 (746)
T ss_pred CHHHHHHHHHHHHHHHhc---CcHHHHH------------HHHHHHH-HHHhc---CCChhHHHHHHHHHHHHcCC
Confidence 466777889999999888 6654322 2333553 44322 23445555556667777664
No 45
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0023 Score=72.47 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=163.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCCh-hHHHHHHHHHHHhhhhcC---h-hHHHH
Q 046316 414 WRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYP-FLYARIFASVARFSSAIS---D-GVLEH 488 (966)
Q Consensus 414 w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~-~Lr~Ra~~~l~~f~~~~~---~-~~~~~ 488 (966)
-..+|=|..|+|.++..-....+.-...-.+.+++. .++ ...+ -+.+-+.|+++.++.... + +....
T Consensus 166 ~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~-----~l~---~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~ 237 (514)
T KOG0166|consen 166 ADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLR-----LLN---KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP 237 (514)
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHH-----Hhc---cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 467888999999998643222210000001222222 222 3333 466678899999999862 1 67888
Q ss_pred HHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhh
Q 046316 489 FLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM-MGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTA 566 (966)
Q Consensus 489 ~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~ 566 (966)
+++++...+.+. +.-|..-||.|+.++.+..+ +.++-.+ ..++..|..++...+.-+...+|.++..++.-+. .+.
T Consensus 238 iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~n-e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq 315 (514)
T KOG0166|consen 238 ILPALLRLLHST-DEEVLTDACWALSYLTDGSN-EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQ 315 (514)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCh-HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHH
Confidence 999999998754 66677999999999887642 2222111 2345677778888777777778888777554333 222
Q ss_pred cc-cccchHHHHHHHHhhcCChhHHHHHHHHHHHHH-cCCC-cHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHH
Q 046316 567 SM-EPMISPLILNIWALHVSDPFISIDAIEVLEAIK-CSPG-CIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTML 643 (966)
Q Consensus 567 ~~-~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~-~~~~-~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l 643 (966)
.+ .....|.+..+..++.++. ++..|.=.+..++ +.+. .-.-+-.-++|.+..+++... +..--+|.=.++.+
T Consensus 316 ~vi~~~~L~~l~~ll~~s~~~~-ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e---f~~rKEAawaIsN~ 391 (514)
T KOG0166|consen 316 VVINSGALPVLSNLLSSSPKES-IKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE---FDIRKEAAWAISNL 391 (514)
T ss_pred HHHhcChHHHHHHHhccCcchh-HHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc---hHHHHHHHHHHHhh
Confidence 21 2334577777744444443 4444444455554 3332 222344578999999998753 34555666667777
Q ss_pred hhcCChhHHHHHHH-HHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 644 LKSASTDVVKAAYD-VCFDAVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 644 ~~~~~~~l~~~~~~-~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
..++.+.....+++ -+.++++.++ ...|..+++.++.++.+++..|.
T Consensus 392 ts~g~~~qi~yLv~~giI~plcdlL-~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 392 TSSGTPEQIKYLVEQGIIKPLCDLL-TCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred cccCCHHHHHHHHHcCCchhhhhcc-cCCChHHHHHHHHHHHHHHHHHH
Confidence 76666555555443 3678888887 56678888888888888887754
No 46
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.34 E-value=0.54 Score=54.84 Aligned_cols=232 Identities=13% Similarity=0.181 Sum_probs=136.9
Q ss_pred HHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhc-----ChhHHHHHHHHHHhhhcCC-CCCcEehhHHHHHHhhcccCC
Q 046316 448 LEQMITEDIGTGVHQYPFLYARIFASVARFSSAI-----SDGVLEHFLSAAITTIAMD-VPPPVKVGACRALSELLPKAN 521 (966)
Q Consensus 448 l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~-----~~~~~~~~l~~~~~~L~~~-~~~~Vr~~A~~al~~~~~~~~ 521 (966)
+...|. ++. ++.+-.|.-..-++.+....+ +...-.+++..++.+++.+ ....|-.-...++.+-+
T Consensus 718 v~R~v~-~lk---de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~l---- 789 (1172)
T KOG0213|consen 718 VSRVVL-DLK---DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNAL---- 789 (1172)
T ss_pred HHHHhh-hhc---cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH----
Confidence 444443 455 555555555556666665543 4556778999999998743 23334344444443322
Q ss_pred CCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhh--cCChhHHHHHHHHHHH
Q 046316 522 KGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALH--VSDPFISIDAIEVLEA 599 (966)
Q Consensus 522 ~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~--~~d~~~~~~~~~~l~~ 599 (966)
....+||+++|+..++..++.-.-++.....+.+..+...-. .--+.+++..+=-+...+ ..+|.+...+++.+.+
T Consensus 790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlk--tc~ee~~m~~lGvvLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLK--TCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH--hccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 245799999999999999998887776666555544432210 000011222222222334 3467777778888888
Q ss_pred HHcCCC--cHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHH-HHHHHhHHHHHHHhccCchHHh
Q 046316 600 IKCSPG--CIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKA-AYDVCFDAVIRIILQSEDHSEM 676 (966)
Q Consensus 600 l~~~~~--~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~-~~~~~fp~l~~~l~~s~d~~~l 676 (966)
+.++-+ ...+=..-++|.+..||.+..+ -..+.+++++..+..++|.-.+.. .+.-||. |+.++ ++...++.
T Consensus 868 I~nvigm~km~pPi~dllPrltPILknrhe---KVqen~IdLvg~IadrgpE~v~aREWMRIcfe-LlelL-kahkK~iR 942 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHE---KVQENCIDLVGTIADRGPEYVSAREWMRICFE-LLELL-KAHKKEIR 942 (1172)
T ss_pred HHHhccccccCCChhhhcccchHhhhhhHH---HHHHHHHHHHHHHHhcCcccCCHHHHHHHHHH-HHHHH-HHHHHHHH
Confidence 886522 2233345678888888876532 367889999999998877433222 2223343 33433 46677888
Q ss_pred hhhHHHHHHHHh-cCccce
Q 046316 677 QNATECLATFIS-GGRQLM 694 (966)
Q Consensus 677 q~~~~~l~~~i~-~~~~~~ 694 (966)
.++...|..+-+ .|++.+
T Consensus 943 Raa~nTfG~IakaIGPqdV 961 (1172)
T KOG0213|consen 943 RAAVNTFGYIAKAIGPQDV 961 (1172)
T ss_pred HHHHhhhhHHHHhcCHHHH
Confidence 888888876554 344443
No 47
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.52 Score=54.28 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=96.2
Q ss_pred HHHHHHHHHHh-cCCCHHHhHHHHHHHHhhccCc---------------------HHHHHHHHhhhccccccccccCCCC
Q 046316 12 QQWLLNCLSAT-LDPNQEVRSFAEVSLNQASLQP---------------------AAVLLKHFIKKHWQEGEESFELPAV 69 (966)
Q Consensus 12 ~~~l~~~L~~~-ls~d~~~R~~AE~~L~~~~~~p---------------------A~i~LKn~I~~~W~~~~~~~~~~~i 69 (966)
..+|..+-... -|.|+..|.+||..|.++...| |+..|-+.|.++= ++
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t----------~l 73 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT----------PL 73 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC----------CC
Confidence 33444444443 3678899999999999999988 6666666666552 68
Q ss_pred ChHHHHHHHHHHHHHhhhc----hHHHHHHHHHHHHHHHhccCCC----C--ccchHHHHHHHhcccCchhhHhHHHHHH
Q 046316 70 SSEEKEVIRKLLLSSLDDT----HRKICTAISMAVASIAAYDWPE----D--WPDLLPFLLKLITDQSNMNGVHGGLRCL 139 (966)
Q Consensus 70 ~~~~K~~IR~~Ll~~L~~~----~~kIr~~~a~~Is~Ia~~D~P~----~--WP~Ll~~L~~~l~s~~~~~~~~~aL~~L 139 (966)
+-+.|--||.-++.-|... .+-+..+++..+++|-+..|-+ + .-+.+..+.+.|+. ++...-.-|++.|
T Consensus 74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~-~~ve~~~igv~iL 152 (1082)
T KOG1410|consen 74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQM-DNVEHCIIGVQIL 152 (1082)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhcc-CchHHHHHHHHHH
Confidence 9999999999999998653 2556778888889998888764 2 34788889999987 4677777899999
Q ss_pred HHHHhhcc
Q 046316 140 ALLSADLD 147 (966)
Q Consensus 140 ~~l~~~l~ 147 (966)
.+++.++.
T Consensus 153 sqLvqemN 160 (1082)
T KOG1410|consen 153 SQLVQEMN 160 (1082)
T ss_pred HHHHHHhh
Confidence 99998753
No 48
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.013 Score=66.46 Aligned_cols=350 Identities=13% Similarity=0.107 Sum_probs=202.8
Q ss_pred CCChhHHHHHHHHHHHhhhhc--Ch---hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC---CCCCccccHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAI--SD---GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA---NKGNFQPQMMGL 532 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~--~~---~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~---~~~~l~p~l~~i 532 (966)
+..+-.+-++.-.+-+..+.- |+ -.....++..+.+|..+.++-+|..|+.||.+++... .+-.+.....
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agav-- 154 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAV-- 154 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCch--
Confidence 444544555555555554431 22 1223567778888875656788999999999998752 1122222222
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcc--cccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC--CCcHH
Q 046316 533 FSSLADLLHQARDETLHLVLETLQAAIKAGFLTASM--EPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS--PGCIH 608 (966)
Q Consensus 533 l~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~--~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~--~~~~~ 608 (966)
-.+..++...+.+....+.=+|..+.+..+.-..+ ....++.++.+..+.....++|. +.=+|..|+.. |.--.
T Consensus 155 -p~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn-~tW~LsNlcrgk~P~P~~ 232 (514)
T KOG0166|consen 155 -PIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN-ATWTLSNLCRGKNPSPPF 232 (514)
T ss_pred -HHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHH-HHHHHHHHHcCCCCCCcH
Confidence 23677888888888888888888887765511111 12344555555444444345554 44577888833 44333
Q ss_pred HHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHh
Q 046316 609 QLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFIS 688 (966)
Q Consensus 609 ~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~ 688 (966)
.-...++|++...+...+. +.+.+|+-.++++..+.+...--.+-.-+.|.|+.++.+++ ..+.-.++.++.|++
T Consensus 233 ~~v~~iLp~L~~ll~~~D~---~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~-~~v~~PaLRaiGNIv- 307 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHSTDE---EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS-PKVVTPALRAIGNIV- 307 (514)
T ss_pred HHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC-cccccHHHhhcccee-
Confidence 4567889999999987543 45678888888888876543222222345788899887654 345556677777733
Q ss_pred cCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHH-HHHHHHHHHHHHhhhHHHH
Q 046316 689 GGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIR-DLVAALVRRLQSAQIAGLR 767 (966)
Q Consensus 689 ~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~-~iL~a~~~rL~~~~~~~~~ 767 (966)
.|.++.-+- =--...+..+..+|+..-.++-.-.+|+.+..|..--..++..++. .++..++.-|.+++- .++
T Consensus 308 tG~d~QTq~-----vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef-~~r 381 (514)
T KOG0166|consen 308 TGSDEQTQV-----VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEF-DIR 381 (514)
T ss_pred eccHHHHHH-----HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccch-HHH
Confidence 333221100 0001124455666654333332334666666655433334544443 667777777777663 233
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHHHccCC
Q 046316 768 SSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRH 839 (966)
Q Consensus 768 ~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~~~d 839 (966)
.-..-.++++...+ ++++ +-+|.+ . + +++..|..+ ......-++++.-||..++..+.
T Consensus 382 KEAawaIsN~ts~g--~~~q-i~yLv~---~----g---iI~plcdlL-~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 382 KEAAWAISNLTSSG--TPEQ-IKYLVE---Q----G---IIKPLCDLL-TCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHHHhhcccC--CHHH-HHHHHH---c----C---Cchhhhhcc-cCCChHHHHHHHHHHHHHHHHHH
Confidence 34455666776664 4555 445532 1 2 555566666 55555668888888888886653
No 49
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.2 Score=56.61 Aligned_cols=363 Identities=16% Similarity=0.179 Sum_probs=192.0
Q ss_pred CCccchhhHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCcc
Q 046316 363 ESTYSCRVSGALLLEEVVSYCGR-EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTS 441 (966)
Q Consensus 363 d~~~s~R~aa~~lL~~L~~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~ 441 (966)
|-.|.-|.+|+--+..+++.+-. .....+-..|.+....+.-.+ +. ..|-|+|..+.+.+-.+.
T Consensus 11 dKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~---~~---n~rkGgLiGlAA~~iaLg--------- 75 (675)
T KOG0212|consen 11 DKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSP---HA---NMRKGGLIGLAAVAIALG--------- 75 (675)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCc---cc---ccccchHHHHHHHHHHhc---------
Confidence 34588899999989888886643 223444445554554443222 11 122288887777765542
Q ss_pred ccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh---hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcc
Q 046316 442 VRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD---GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLP 518 (966)
Q Consensus 442 ~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~---~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~ 518 (966)
.+-.+++.+.+.|.+.--.++..-+|.-||..+-..+..... .....++...-+. ..|.+.-||-+ +.-+.+++.
T Consensus 76 ~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kl-saDsd~~V~~~-aeLLdRLik 153 (675)
T KOG0212|consen 76 IKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKL-SADSDQNVRGG-AELLDRLIK 153 (675)
T ss_pred cccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHH-hcCCccccccH-HHHHHHHHH
Confidence 122336777777766533367778888888776666554321 2334444443333 34556677654 455666665
Q ss_pred cCCCC-CccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCCh--hHHHH--
Q 046316 519 KANKG-NFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDP--FISID-- 592 (966)
Q Consensus 519 ~~~~~-~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~--~~~~~-- 592 (966)
+...+ .-+=.++.++..|-.-+......+...+++=|...-..-+ .-..|.+.+.+-+++. .+|+ .+|..
T Consensus 154 dIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~----LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 154 DIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNM----LSDSSDEVRTLTD 229 (675)
T ss_pred HhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHH----hcCCcHHHHHHHH
Confidence 52111 1133455555555555555566778888877766654422 1122323444444444 3443 34422
Q ss_pred --HHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhcc
Q 046316 593 --AIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQS 670 (966)
Q Consensus 593 --~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s 670 (966)
..+.+.++.+.|..+. ....+|++..-++.+. .....-|+--+..+++-.|..+... ...++..+++++..+
T Consensus 230 t~l~~fL~eI~s~P~s~d--~~~~i~vlv~~l~ss~---~~iq~~al~Wi~efV~i~g~~~l~~-~s~il~~iLpc~s~~ 303 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPSSMD--YDDMINVLVPHLQSSE---PEIQLKALTWIQEFVKIPGRDLLLY-LSGILTAILPCLSDT 303 (675)
T ss_pred HHHHHHHHHHhcCccccC--cccchhhccccccCCc---HHHHHHHHHHHHHHhcCCCcchhhh-hhhhhhhcccCCCCC
Confidence 2356667777776531 1233444443333332 2333456766777777666555443 455667777776533
Q ss_pred CchHHhhhhHHHHHH-HHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHH
Q 046316 671 EDHSEMQNATECLAT-FISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRD 749 (966)
Q Consensus 671 ~d~~~lq~~~~~l~~-~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~ 749 (966)
+...+ ......+++ +.+..++.... + .--...+++++.+.++.+.. .+...|-+-+..+..++|+++--+..+
T Consensus 304 e~~~i-~~~a~~~n~~l~~l~s~~~~~---~-~id~~~ii~vl~~~l~~~~~-~tri~~L~Wi~~l~~~~p~ql~~h~~~ 377 (675)
T KOG0212|consen 304 EEMSI-KEYAQMVNGLLLKLVSSERLK---E-EIDYGSIIEVLTKYLSDDRE-ETRIAVLNWIILLYHKAPGQLLVHNDS 377 (675)
T ss_pred ccccH-HHHHHHHHHHHHHHHhhhhhc---c-ccchHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHhhCcchhhhhccH
Confidence 32111 111111221 22221111111 0 11234788888888876644 345577788889999999986444444
Q ss_pred HHHHHHHHH
Q 046316 750 LVAALVRRL 758 (966)
Q Consensus 750 iL~a~~~rL 758 (966)
|...++..|
T Consensus 378 if~tLL~tL 386 (675)
T KOG0212|consen 378 IFLTLLKTL 386 (675)
T ss_pred HHHHHHHhh
Confidence 444444443
No 50
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=1.1 Score=53.27 Aligned_cols=563 Identities=16% Similarity=0.181 Sum_probs=251.4
Q ss_pred HHHHhhh--chHHHHHHHHHHHHHHHhccCCC--Cccc---------hHHHHHHHhcccCchhhHhHHHHHHHHHHhhcc
Q 046316 81 LLSSLDD--THRKICTAISMAVASIAAYDWPE--DWPD---------LLPFLLKLITDQSNMNGVHGGLRCLALLSADLD 147 (966)
Q Consensus 81 Ll~~L~~--~~~kIr~~~a~~Is~Ia~~D~P~--~WP~---------Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~ 147 (966)
+|+++.+ -+..+|.++|.....-.+..|-. +=|. +-..++.++-+. . . +-..-|.+...-..
T Consensus 42 lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s-~-~---~iQ~qlseal~~Ig 116 (960)
T KOG1992|consen 42 LLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSS-P-F---NIQKQLSEALSLIG 116 (960)
T ss_pred HHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcC-c-H---HHHHHHHHHHHHHh
Confidence 4555533 36889999999998887766532 1121 112222222221 0 0 11111222222233
Q ss_pred ccchhhhhhhHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCC-
Q 046316 148 DAIVPKLVPVLFPVLHTIVSFPE-SYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPV- 225 (966)
Q Consensus 148 ~~~~~~i~~~l~p~L~~i~~~~~-~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~- 225 (966)
...|+.--|.++|.|..-+++.. +....++..|=.+|+.--.-.. .+.-..+++..+..+-.+...+|.+..+.-.
T Consensus 117 ~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efr--SdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 117 KRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFR--SDALWLEIKLVLDRFAEPLTDLFRKTMELIQR 194 (960)
T ss_pred ccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccc--cHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Confidence 34566667888888888776432 1112333333334432110000 0000113444343333345555555443210
Q ss_pred CCCCCChhhHHHHHHHHHHHHH-----HhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccc
Q 046316 226 QPEDPDDWGVKMEVLKCLNQFI-----QNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKS 300 (966)
Q Consensus 226 ~~~d~~~~~lk~~~~~~L~~l~-----~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~ 300 (966)
.++|....+.--.++-.+.+++ +.-|++|..++..+++.|.+.+..-.|. .+ +.+|+.-.
T Consensus 195 ~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~-----le----------~~~ee~~~ 259 (960)
T KOG1992|consen 195 HANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPL-----LE----------SDEEEATV 259 (960)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcc-----cc----------cCcccccH
Confidence 1122221211122222333333 2336778888888888777666431111 00 11233333
Q ss_pred hHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhc-CCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHH
Q 046316 301 LDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQ-MTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEV 379 (966)
Q Consensus 301 ~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~-lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L 379 (966)
++.+..+++|.+.--+ .++-+.+.+.+++++..+=..+. .+.+. -....-..|..||..+
T Consensus 260 l~~lka~ICEi~~LY~--~kYeEef~~fl~~fv~~~W~LL~~~s~~~-----------------kyD~Lvs~Al~FLt~V 320 (960)
T KOG1992|consen 260 LDKLKAQICEIFNLYA--TKYEEEFQPFLPDFVTATWNLLVSTSPDT-----------------KYDYLVSKALQFLTSV 320 (960)
T ss_pred HHHHHHHHHHHHHHHH--HhhHHHHHhhHHHHHHHHHHHHHhcCCCc-----------------cHHHHHHHHHHHHHHH
Confidence 5777777777776554 24456777888877765533222 11110 0122334555555555
Q ss_pred HHHhC-------hhhHHHHH-----------------------HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHH
Q 046316 380 VSYCG-------REGIDAII-----------------------DAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSE 429 (966)
Q Consensus 380 ~~~~~-------~~~~~~l~-----------------------~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~ 429 (966)
++... +.++..+. .|+.+-+. |+..+ -.|-+|+-+++.++.
T Consensus 321 ~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlE--------GsDvd-TRRR~a~dlvrgL~~ 391 (960)
T KOG1992|consen 321 SRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLE--------GSDVD-TRRRAAIDLVRGLCK 391 (960)
T ss_pred HhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcc--------cCCcc-hhHHHHHHHHHHHHH
Confidence 54211 11111221 12222221 22212 246677778888876
Q ss_pred HHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhc-------C-----hhHHHHHHHHHHhhh
Q 046316 430 QLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAI-------S-----DGVLEHFLSAAITTI 497 (966)
Q Consensus 430 ~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~-------~-----~~~~~~~l~~~~~~L 497 (966)
.+ +..- .++ +...+++.+- .+...++.+-.-+.+|+.++.-++..- . .+...=+-..++..|
T Consensus 392 ~f-e~~v---t~v-~~~~v~~~l~-~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L 465 (960)
T KOG1992|consen 392 NF-EGQV---TGV-FSSEVQRLLD-QYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDL 465 (960)
T ss_pred Hh-cchh---HHH-HHHHHHHHHH-HhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHh
Confidence 54 2211 111 1222222221 111113344455778888887776541 1 022222334455556
Q ss_pred cC-C--CCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChh---hHHHHHHHHHHHHhhcc---hhhcc
Q 046316 498 AM-D--VPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDE---TLHLVLETLQAAIKAGF---LTASM 568 (966)
Q Consensus 498 ~~-~--~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d---~l~~~le~l~~~i~~~~---~~~~~ 568 (966)
.+ + ..+.+|..|.+.+-.|=...+ .+++..++..+...++..+.= --...+|.+--+-...+ +.+.
T Consensus 466 ~s~~vn~~pilka~aIKy~~~FR~ql~----~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~- 540 (960)
T KOG1992|consen 466 LSPNVNEFPILKADAIKYIYTFRNQLG----KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAE- 540 (960)
T ss_pred ccCccccccchhhcccceeeeecccCC----hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchh-
Confidence 54 2 246778878776655433322 234444444444444332211 11234555544333211 3332
Q ss_pred cccchH----HHHHHHHhh-----cCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhc----CCC-CCCchhhH
Q 046316 569 EPMISP----LILNIWALH-----VSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILN----NPQ-QQPDGLVA 634 (966)
Q Consensus 569 ~~~l~p----~~l~l~~~~-----~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~----~~~-~~~~~~~~ 634 (966)
.+.| .+..+|... ..|+++.-+++.++.. .++...++...+++-+.+++. ++. +.+.+++.
T Consensus 541 --~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i---~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLF 615 (960)
T KOG1992|consen 541 --DIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI---LQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLF 615 (960)
T ss_pred --hcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh---CHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHH
Confidence 3444 333444211 2344544333333322 233333444455555555543 332 23345554
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHh
Q 046316 635 GSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASR 714 (966)
Q Consensus 635 ~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~ 714 (966)
+++-++-..+....+...+.+...+||..-.++. .+-.+.+..+...+.-.+..... +--+..+.++.-
T Consensus 616 Esi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~-eDI~EfiPYvfQlla~lve~~~~----------~ip~~~~~l~~~ 684 (960)
T KOG1992|consen 616 ESIGLLIRKTCKANPSAVSSLEEALFPVFQTILS-EDIQEFIPYVFQLLAVLVEHSSG----------TIPDSYSPLFPP 684 (960)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC----------CCchhHHHHHHH
Confidence 4444333333333334444455666776665553 33345666677777777665432 223345556666
Q ss_pred hcCCCC
Q 046316 715 LLNPDL 720 (966)
Q Consensus 715 lL~~~~ 720 (966)
||+|.+
T Consensus 685 lLsp~l 690 (960)
T KOG1992|consen 685 LLSPNL 690 (960)
T ss_pred hcCHHH
Confidence 777765
No 51
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.98 E-value=0.032 Score=61.13 Aligned_cols=177 Identities=18% Similarity=0.206 Sum_probs=125.3
Q ss_pred ccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCC
Q 046316 442 VRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKAN 521 (966)
Q Consensus 442 ~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~ 521 (966)
..+..++.++|.|.++ +.++-+|.+|+.++|-++-. +.+...+++....+.+..+ +..||+.|++++..++-.-+
T Consensus 22 ~~l~~ll~~lI~P~v~---~~~~~vR~~al~cLGl~~Ll-d~~~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 22 ISLESLLDSLILPAVQ---SSDPAVRELALKCLGLCCLL-DKELAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHG 96 (298)
T ss_pred chHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcC
Confidence 4467889999999998 88899999999999998754 4566777777777777544 78999999999988765311
Q ss_pred CCC--------ccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhc--CChhHH
Q 046316 522 KGN--------FQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHV--SDPFIS 590 (966)
Q Consensus 522 ~~~--------l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~--~d~~~~ 590 (966)
... -......+++.+.+.+...+.+....+.|.+...+-.+. .. .+.+...++-+|-... .++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHH
Confidence 111 223456788888888888877888999999988876544 22 0123333444454332 334566
Q ss_pred HHHHHHHHHHHcC-CCcHHHHHHhhhcchHhhhcCCC
Q 046316 591 IDAIEVLEAIKCS-PGCIHQLASRILPYVGPILNNPQ 626 (966)
Q Consensus 591 ~~~~~~l~~l~~~-~~~~~~l~~~~lP~l~~~l~~~~ 626 (966)
-...-+|...+.+ +..-..+.+.++|++..+...+.
T Consensus 174 Q~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 174 QCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 5555566777744 55667788899999999887654
No 52
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=1.6 Score=52.95 Aligned_cols=239 Identities=16% Similarity=0.149 Sum_probs=122.5
Q ss_pred CCChhHHHHHHHHHHHhhhhcCh-----hHHHHHH-HHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISD-----GVLEHFL-SAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFS 534 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~-----~~~~~~l-~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~ 534 (966)
..+++-+.-|+.++|..++.+.+ .....++ +.++..++ ++.--.|..||..+..|++...+ -...+..+++
T Consensus 429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~-s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale 505 (1010)
T KOG1991|consen 429 NKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ-SPYGYLRARACWVLSQFSSIDFK--DPNNLSEALE 505 (1010)
T ss_pred ccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhc-CchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHH
Confidence 45678888899999999987532 2222222 22333333 33457899999999999965322 2334556667
Q ss_pred HHHHHHhh-cChhhHHHHHHHHHHHHhhcch----hhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHH-cCCC---
Q 046316 535 SLADLLHQ-ARDETLHLVLETLQAAIKAGFL----TASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIK-CSPG--- 605 (966)
Q Consensus 535 ~L~~ll~~-~~~d~l~~~le~l~~~i~~~~~----~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~-~~~~--- 605 (966)
...+.+.. -+--+.....-+|...+..... ..+....++.-++++ .+...+ .....+++++. ..++
T Consensus 506 ~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L-~ne~En----d~Lt~vme~iV~~fseEls 580 (1010)
T KOG1991|consen 506 LTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKL-SNEVEN----DDLTNVMEKIVCKFSEELS 580 (1010)
T ss_pred HHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHH-HHhcch----hHHHHHHHHHHHHHHHhhc
Confidence 77777764 2223444333344444443321 222222333344444 332222 22345566655 2232
Q ss_pred -cHHHHHHhhhcchHhhhcCCCC---CCchh---hHHHHHHHHHHhhcCC--hhHHHHHHHHHhHHHHHHHhccCchHHh
Q 046316 606 -CIHQLASRILPYVGPILNNPQQ---QPDGL---VAGSLDLLTMLLKSAS--TDVVKAAYDVCFDAVIRIILQSEDHSEM 676 (966)
Q Consensus 606 -~~~~l~~~~lP~l~~~l~~~~~---~~~~~---~~~al~ll~~l~~~~~--~~l~~~~~~~~fp~l~~~l~~s~d~~~l 676 (966)
--..+++.+.-.+.++++++.+ ...+- ....|.-+++++.... +.+...+...++|.+-. +++++-.++.
T Consensus 581 PfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~-iL~~~i~dfy 659 (1010)
T KOG1991|consen 581 PFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGF-ILKNDITDFY 659 (1010)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHHhhHHHH
Confidence 2245777777777788775221 11111 1233444455554332 23444333333343333 3356666778
Q ss_pred hhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhc
Q 046316 677 QNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLL 716 (966)
Q Consensus 677 q~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL 716 (966)
+.+.+.+.++....++ + .+-+..+++.+...+
T Consensus 660 eE~~ei~~~~t~~~~~-I-------sp~mW~ll~li~e~~ 691 (1010)
T KOG1991|consen 660 EELLEIVSSLTFLSKE-I-------SPIMWGLLELILEVF 691 (1010)
T ss_pred HHHHHHHhhhhhhhcc-c-------CHHHHHHHHHHHHHH
Confidence 8887777766554322 1 344555555555444
No 53
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.91 E-value=1.2 Score=51.17 Aligned_cols=195 Identities=19% Similarity=0.250 Sum_probs=120.0
Q ss_pred chhhHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHH
Q 046316 367 SCRVSGALLLEEVVSYCGRE-GIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLG 445 (966)
Q Consensus 367 s~R~aa~~lL~~L~~~~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~ 445 (966)
..|.++..++..++.++++. .+..++......+. +...-..+..++..+..+..++.-..+ +. ..
T Consensus 205 ~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~Wi~KaLv~R~~----~~-~~ 270 (415)
T PF12460_consen 205 FSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSIS---------SSEDSELRPQALEILIWITKALVMRGH----PL-AT 270 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhc---------ccCCcchhHHHHHHHHHHHHHHHHcCC----ch-HH
Confidence 34888999999999998654 34444444443330 011234566677777777776653221 11 22
Q ss_pred HHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhh-cCh--------hHHHHHHHHHH----hhhcCCCCCcEehhHHHH
Q 046316 446 ELLEQMITEDIGTGVHQYPFLYARIFASVARFSSA-ISD--------GVLEHFLSAAI----TTIAMDVPPPVKVGACRA 512 (966)
Q Consensus 446 ~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~-~~~--------~~~~~~l~~~~----~~L~~~~~~~Vr~~A~~a 512 (966)
.++.+.+ ..+. .....-.-+|++.++-.-... ++. =+.+++|..++ +...+. +...|.....|
T Consensus 271 ~~~~~L~-~lL~--~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~A 346 (415)
T PF12460_consen 271 ELLDKLL-ELLS--SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTA 346 (415)
T ss_pred HHHHHHH-HHhC--ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHH
Confidence 3344332 3343 123355566666555443221 111 12334454444 443322 22377778899
Q ss_pred HHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHH
Q 046316 513 LSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNI 579 (966)
Q Consensus 513 l~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l 579 (966)
+..++++.+++.+.++++.++..+++-+.-.+.+.+..+++++...+...+ ....+.+.++|.++++
T Consensus 347 Ls~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 999999888899999999999999999988888899999999999998876 4444445566666553
No 54
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=1.4 Score=51.53 Aligned_cols=284 Identities=10% Similarity=0.184 Sum_probs=141.1
Q ss_pred HHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccc
Q 046316 448 LEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQP 527 (966)
Q Consensus 448 l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p 527 (966)
..+.+--+++ +++-+=-+-|+-.++.| ..+++...+...+++.|.+. .+-||-.|+..+...+-. -++.++|
T Consensus 110 ~tn~~rkdl~---S~n~ye~giAL~GLS~f---vTpdLARDLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLk-YPeAlr~ 181 (877)
T KOG1059|consen 110 TTNLLRKDLN---SSNVYEVGLALSGLSCI---VTPDLARDLADDVFTLLNSS-KPYVRKKAILLLYKVFLK-YPEALRP 181 (877)
T ss_pred HHHHHHHHhc---cCccchhhheecccccc---cCchhhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHh-hhHhHhh
Confidence 3444444444 44445455555555555 23455555566666665532 344666666655544322 1345666
Q ss_pred cHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcH
Q 046316 528 QMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCI 607 (966)
Q Consensus 528 ~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~ 607 (966)
..|.+.+.| .+.+..+...+...|.+.-..+| .-.-.+.|.++++.....++. +...++-+|.+|....
T Consensus 182 ~FprL~EkL----eDpDp~V~SAAV~VICELArKnP---knyL~LAP~ffkllttSsNNW-mLIKiiKLF~aLtplE--- 250 (877)
T KOG1059|consen 182 CFPRLVEKL----EDPDPSVVSAAVSVICELARKNP---QNYLQLAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLE--- 250 (877)
T ss_pred hHHHHHHhc----cCCCchHHHHHHHHHHHHHhhCC---cccccccHHHHHHHhccCCCe-ehHHHHHHHhhccccC---
Confidence 655444332 33333344444455555444444 111146788888855444444 4445566676665431
Q ss_pred HHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhc-CChhHHHH--HHHHHhHHHHHHHhccCchHHhhhhHHHHH
Q 046316 608 HQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKS-ASTDVVKA--AYDVCFDAVIRIILQSEDHSEMQNATECLA 684 (966)
Q Consensus 608 ~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~-~~~~l~~~--~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~ 684 (966)
+.+-.+++|.|...+.+.. -+....|++.+++.. ...+++.. .+..|...|-- +..++|...---|+-|+.
T Consensus 251 PRLgKKLieplt~li~sT~-----AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~-fiedsDqNLKYlgLlam~ 324 (877)
T KOG1059|consen 251 PRLGKKLIEPITELMESTV-----AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRI-FIEDSDQNLKYLGLLAMS 324 (877)
T ss_pred chhhhhhhhHHHHHHHhhH-----HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhh-hhhcCCccHHHHHHHHHH
Confidence 2455678888888877532 234444555555543 11222111 12223333333 333445444333444444
Q ss_pred HHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhhhH
Q 046316 685 TFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIA 764 (966)
Q Consensus 685 ~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~~~ 764 (966)
-+...- +..++.--+++-|+|+.. ++|-...+-.|+..++.+ ..+-.|.+.++..+..++-.
T Consensus 325 KI~ktH-----------p~~Vqa~kdlIlrcL~Dk-D~SIRlrALdLl~gmVsk------kNl~eIVk~LM~~~~~ae~t 386 (877)
T KOG1059|consen 325 KILKTH-----------PKAVQAHKDLILRCLDDK-DESIRLRALDLLYGMVSK------KNLMEIVKTLMKHVEKAEGT 386 (877)
T ss_pred HHhhhC-----------HHHHHHhHHHHHHHhccC-CchhHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhccch
Confidence 333321 234455566777777654 556666777777666644 34455566555555555544
Q ss_pred HHHHHHHHHH
Q 046316 765 GLRSSLLLIF 774 (966)
Q Consensus 765 ~~~~~li~vf 774 (966)
.++..++..+
T Consensus 387 ~yrdell~~I 396 (877)
T KOG1059|consen 387 NYRDELLTRI 396 (877)
T ss_pred hHHHHHHHHH
Confidence 4554444433
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=1.9 Score=51.23 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=81.4
Q ss_pred HHHHHHHHhhhcccccccccc-------CCCCChHHHHHHHHHHHH---HhhhchHHHHHHHHHHHHHHHhccCCCCccc
Q 046316 45 AAVLLKHFIKKHWQEGEESFE-------LPAVSSEEKEVIRKLLLS---SLDDTHRKICTAISMAVASIAAYDWPEDWPD 114 (966)
Q Consensus 45 A~i~LKn~I~~~W~~~~~~~~-------~~~i~~~~K~~IR~~Ll~---~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~ 114 (966)
..+++-|.+++.-+....--. +.-.++ +.+|+...+ +|..+++-||+-++.|..++.+.. |+.-..
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s~---EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~ 179 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEH 179 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHH
Confidence 556678888887765422100 222333 467776665 457788999999999999999876 665555
Q ss_pred hHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc--cchhhhhhhHHHHHHHHhcC
Q 046316 115 LLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD--AIVPKLVPVLFPVLHTIVSF 168 (966)
Q Consensus 115 Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~--~~~~~i~~~l~p~L~~i~~~ 168 (966)
+++.--+.|.+. +.-...+++..+.++|+.-.+ +.|..+++.++..|-++..+
T Consensus 180 f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~ 234 (866)
T KOG1062|consen 180 FVIAFRKLLCEK-HHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNS 234 (866)
T ss_pred hhHHHHHHHhhc-CCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666777764 666788888889999986443 35666667777776666654
No 56
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=2 Score=50.90 Aligned_cols=253 Identities=17% Similarity=0.266 Sum_probs=138.2
Q ss_pred HHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchh
Q 046316 486 LEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLT 565 (966)
Q Consensus 486 ~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~ 565 (966)
..-+++.+-.+|.+ .+..|..++|.++..+... . ....|.+.|..++.+. .++...+|..|.......+
T Consensus 285 ~~lLL~stkpLl~S-~n~sVVmA~aql~y~lAP~---~----~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~-- 353 (968)
T KOG1060|consen 285 LKLLLQSTKPLLQS-RNPSVVMAVAQLFYHLAPK---N----QVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP-- 353 (968)
T ss_pred HHHHHHhccHHHhc-CCcHHHHHHHhHHHhhCCH---H----HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch--
Confidence 44456655555553 3567778888888876643 2 2345567777766543 3567778888776655443
Q ss_pred hcccccchHHHHHHHHhhcCChh-HHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHh
Q 046316 566 ASMEPMISPLILNIWALHVSDPF-ISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLL 644 (966)
Q Consensus 566 ~~~~~~l~p~~l~l~~~~~~d~~-~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~ 644 (966)
.-+.|++-+.|- ..+||. +...=+++|..|++-... ..+++-+...+..... .++..+++-++...
T Consensus 354 ----~lF~P~lKsFfv-~ssDp~~vk~lKleiLs~La~esni-----~~ILrE~q~YI~s~d~---~faa~aV~AiGrCA 420 (968)
T KOG1060|consen 354 ----TLFEPHLKSFFV-RSSDPTQVKILKLEILSNLANESNI-----SEILRELQTYIKSSDR---SFAAAAVKAIGRCA 420 (968)
T ss_pred ----hhhhhhhhceEe-ecCCHHHHHHHHHHHHHHHhhhccH-----HHHHHHHHHHHhcCch---hHHHHHHHHHHHHH
Confidence 112233222211 356774 344446777777743221 2344455555554422 46777777777766
Q ss_pred hcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCcc
Q 046316 645 KSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSG 724 (966)
Q Consensus 645 ~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~ 724 (966)
.+.. . +-.+|+.-|+.++. +.|..++-.+...++.++..++.+ +.+.+.+ +.++++.-.-..|
T Consensus 421 ~~~~-s----v~~tCL~gLv~Lls-shde~Vv~eaV~vIk~Llq~~p~~----------h~~ii~~-La~lldti~vp~A 483 (968)
T KOG1060|consen 421 SRIG-S----VTDTCLNGLVQLLS-SHDELVVAEAVVVIKRLLQKDPAE----------HLEILFQ-LARLLDTILVPAA 483 (968)
T ss_pred HhhC-c----hhhHHHHHHHHHHh-cccchhHHHHHHHHHHHHhhChHH----------HHHHHHH-HHHHhhhhhhhhh
Confidence 6543 1 22356778888875 446778888889999999986643 2223332 2334432212223
Q ss_pred ccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCHHH
Q 046316 725 SLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEW 787 (966)
Q Consensus 725 ~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~~~~~~~~ 787 (966)
...+-+|+.......+ ...|++|+.++..+. .+...++-..+..-++|.++ +.++
T Consensus 484 RA~IiWLige~~e~vp----ri~PDVLR~laksFs-~E~~evKlQILnL~aKLyl~---~~~~ 538 (968)
T KOG1060|consen 484 RAGIIWLIGEYCEIVP----RIAPDVLRKLAKSFS-DEGDEVKLQILNLSAKLYLT---NIDQ 538 (968)
T ss_pred hceeeeeehhhhhhcc----hhchHHHHHHHHhhc-cccchhhHHHHHhhhhheEe---chhh
Confidence 3233344433332211 123444444444332 44566666677777888777 5554
No 57
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=2.9 Score=51.33 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHH----hcccCchhhHhHHHHHHHHHHhhcc
Q 046316 72 EEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKL----ITDQSNMNGVHGGLRCLALLSADLD 147 (966)
Q Consensus 72 ~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~----l~s~~~~~~~~~aL~~L~~l~~~l~ 147 (966)
+--+.+-+.|+.+|.+.+..||-.+|--++.|+..+ | ++|.++++.. +.-.++....|||+.+|.++...=-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL-P---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC-c---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC
Confidence 344577888999999999999999999999999988 4 4555555544 3333356789999999999987511
Q ss_pred ccchhhhhhhHHHHHHHHhcC-----CCCCcHHHHHHHHHHHHHHHH
Q 046316 148 DAIVPKLVPVLFPVLHTIVSF-----PESYDRYVRTKALSIVYSCTA 189 (966)
Q Consensus 148 ~~~~~~i~~~l~p~L~~i~~~-----~~~~~~~~r~~al~i~~~~~~ 189 (966)
-++...+.+.|.+..-+.= ....+..+|-.|+=+..+...
T Consensus 413 --Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~R 457 (1133)
T KOG1943|consen 413 --LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFAR 457 (1133)
T ss_pred --cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHh
Confidence 1233344455555544431 111245677776655555443
No 58
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=3.7 Score=52.31 Aligned_cols=507 Identities=17% Similarity=0.189 Sum_probs=263.1
Q ss_pred HHHHHHHH-HHhcCCCHHHhHHHHHHHHh----hccCcHHHHHHHHhhhcccc---ccccc------cC----CCC-ChH
Q 046316 12 QQWLLNCL-SATLDPNQEVRSFAEVSLNQ----ASLQPAAVLLKHFIKKHWQE---GEESF------EL----PAV-SSE 72 (966)
Q Consensus 12 ~~~l~~~L-~~~ls~d~~~R~~AE~~L~~----~~~~pA~i~LKn~I~~~W~~---~~~~~------~~----~~i-~~~ 72 (966)
+-.+...| ....||++..|+++--.|-. +.++|+.+.-++-|...... +.+.| +| ..+ +..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 33444444 66789999999999988763 33467555555555533321 11112 11 111 334
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHH----HHHHhccCCC-----------------CccchHHHHHHHhcccCchhh
Q 046316 73 EKEVIRKLLLSSLDDTHRKICTAISMAV----ASIAAYDWPE-----------------DWPDLLPFLLKLITDQSNMNG 131 (966)
Q Consensus 73 ~K~~IR~~Ll~~L~~~~~kIr~~~a~~I----s~Ia~~D~P~-----------------~WP~Ll~~L~~~l~s~~~~~~ 131 (966)
.|..+-+.|+..|..+-++.-+..+..- +.+.. -|+ .=|+|+=..+++-+.+..-+.
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~--Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnS 973 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGK--TPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNS 973 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCC--CCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhc
Confidence 5666666666665333222100000000 00110 111 235666666666655445566
Q ss_pred HhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhH
Q 046316 132 VHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLK 211 (966)
Q Consensus 132 ~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 211 (966)
..||-.-|..|.+.- .+++.+..++++|.|++.=-++. ..++. |++-++..+. . +.+..+..++.
T Consensus 974 k~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~---~~Vq~-aM~sIW~~Li------~----D~k~~vd~y~n 1038 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPD---KKVQD-AMTSIWNALI------T----DSKKVVDEYLN 1038 (1702)
T ss_pred ccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCc---HHHHH-HHHHHHHHhc------c----ChHHHHHHHHH
Confidence 677666666666543 34678889999999999765443 23332 3333332221 1 23445555666
Q ss_pred HHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcch-hhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCC
Q 046316 212 PWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPS-LAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAG 290 (966)
Q Consensus 212 ~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~ 290 (966)
.+++-++.-+.. .+|.+|...+-.|..+.+.-|. .+..+++. +|...-.. +..|-
T Consensus 1039 eIl~eLL~~lt~-------kewRVReasclAL~dLl~g~~~~~~~e~lpe----lw~~~fRv-----mDDIK-------- 1094 (1702)
T KOG0915|consen 1039 EILDELLVNLTS-------KEWRVREASCLALADLLQGRPFDQVKEKLPE----LWEAAFRV-----MDDIK-------- 1094 (1702)
T ss_pred HHHHHHHHhccc-------hhHHHHHHHHHHHHHHHcCCChHHHHHHHHH----HHHHHHHH-----HHHHH--------
Confidence 555444443332 4799999999999999988763 45555543 34332110 01110
Q ss_pred CcCCCCCccchHHHHHHHHHHHHHHh-cChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccC--Cccc
Q 046316 291 RYDSDGAEKSLDSFVIQLFEFLLTIV-GSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDE--STYS 367 (966)
Q Consensus 291 ~~d~~g~~~~~~~l~~~~~efl~~~~-~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d--~~~s 367 (966)
-+.......+..+++.++ +.-..-+- ..-.+++..++|++- |+.. ..-.
T Consensus 1095 --------EsVR~aa~~~~~~lsKl~vr~~d~~~~--~~~~~~l~~iLPfLl------------------~~gims~v~e 1146 (1702)
T KOG0915|consen 1095 --------ESVREAADKAARALSKLCVRICDVTNG--AKGKEALDIILPFLL------------------DEGIMSKVNE 1146 (1702)
T ss_pred --------HHHHHHHHHHHHHHHHHHhhhcccCCc--ccHHHHHHHHHHHHh------------------ccCcccchHH
Confidence 012333444455555442 10000000 001123333334321 1111 2356
Q ss_pred hhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHH
Q 046316 368 CRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGEL 447 (966)
Q Consensus 368 ~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~ 447 (966)
+|..+...+.+|++..|+..-+.+-..|.-.++.+.. ..+...-.-++.+.+.-.+.+ +.
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~------lE~~vLnYls~r~~~~e~eal-------------Dt- 1206 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE------LEPQVLNYLSLRLINIETEAL-------------DT- 1206 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc------cchHHHHHHHHhhhhhHHHHH-------------HH-
Confidence 7999999999999999975433333333333333211 112344444444432222211 11
Q ss_pred HHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccc
Q 046316 448 LEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQP 527 (966)
Q Consensus 448 l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p 527 (966)
+.-- . .-..|.. -++++....++.+.+.++.+.+...+......+-|++++.-+..+.... ...+.|
T Consensus 1207 ~R~s---~----aksspmm-----eTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~-~~emtP 1273 (1702)
T KOG0915|consen 1207 LRAS---A----AKSSPMM-----ETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL-GSEMTP 1273 (1702)
T ss_pred HHHh---h----hcCCcHH-----HHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh-ccccCc
Confidence 1100 0 1233333 4667766677777788888888888876667889999998888777653 356899
Q ss_pred cHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhh-cCChhHHHHHHHHHHHHHc-CCC
Q 046316 528 QMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALH-VSDPFISIDAIEVLEAIKC-SPG 605 (966)
Q Consensus 528 ~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~-~~d~~~~~~~~~~l~~l~~-~~~ 605 (966)
|.+.++..++..+.+-.+-.+...--++..+++... + ++...++-.+.+.+ ..++-.+..+...+..+.+ +++
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss--~---dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e 1348 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS--P---DQMQKLIETLLADLLGKDESLKSISCATISNIANYSQE 1348 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC--h---HHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHH
Confidence 999999999988877554444444444444444321 0 11112222221222 1222112223333333553 467
Q ss_pred cHHHHHHhhhcchHhhhcCC
Q 046316 606 CIHQLASRILPYVGPILNNP 625 (966)
Q Consensus 606 ~~~~l~~~~lP~l~~~l~~~ 625 (966)
.+..+...++|.+.-.+...
T Consensus 1349 ~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1349 MLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred HHHhhHHHHHHHHHHHHhHH
Confidence 77888899999998777643
No 59
>PRK09687 putative lyase; Provisional
Probab=96.35 E-value=0.28 Score=52.95 Aligned_cols=151 Identities=12% Similarity=-0.017 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSA 492 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~ 492 (966)
+.+.|.++..+|+.+.+. ++...+.. .++ ++.+.+|.-|.|++|++...-. .....++.
T Consensus 36 d~~vR~~A~~aL~~~~~~------------~~~~~l~~----ll~---~~d~~vR~~A~~aLg~lg~~~~--~~~~a~~~ 94 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ------------DVFRLAIE----LCS---SKNPIERDIGADILSQLGMAKR--CQDNVFNI 94 (280)
T ss_pred CHHHHHHHHHHHHhcCcc------------hHHHHHHH----HHh---CCCHHHHHHHHHHHHhcCCCcc--chHHHHHH
Confidence 467888888888876431 11111222 233 6788999999999998754211 12345555
Q ss_pred HHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccc
Q 046316 493 AITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMI 572 (966)
Q Consensus 493 ~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l 572 (966)
+...+..|.+..||.+|+.+|..++.... ...+.+++.+...+.+.+..+...+..+|... +. ...
T Consensus 95 L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-~~--------~~a 160 (280)
T PRK09687 95 LNNLALEDKSACVRASAINATGHRCKKNP-----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-ND--------EAA 160 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhccccccc-----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-CC--------HHH
Confidence 55554456678899999999988764321 11334455555555555555655555555322 11 122
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 046316 573 SPLILNIWALHVSDPFISIDAIEVLEAI 600 (966)
Q Consensus 573 ~p~~l~l~~~~~~d~~~~~~~~~~l~~l 600 (966)
++.++.+. ...|+.+|..+...|..+
T Consensus 161 i~~L~~~L--~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLL--KDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHh--cCCCHHHHHHHHHHHhcC
Confidence 34455442 234556666555554443
No 60
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.35 E-value=0.079 Score=52.27 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=103.1
Q ss_pred CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Q 046316 111 DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAM 190 (966)
Q Consensus 111 ~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~ 190 (966)
.++.+...+.+++++. ++..+-.|+..+..++++-+.+.|..-+...+..+++++++++ +..++..++..+..++..
T Consensus 22 ~l~~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~--~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD--PPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH
Confidence 4556677777778774 6778889999999999887667776777889999999998864 566777777766665554
Q ss_pred HHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHH
Q 046316 191 LGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVV 262 (966)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~ 262 (966)
+. .++.-..+...|.++.+++.++++++. -.....++++|..+...||..|+|+...+-
T Consensus 99 ~~----~~p~l~Rei~tp~l~~~i~~ll~l~~~---------~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~ 157 (165)
T PF08167_consen 99 IR----GKPTLTREIATPNLPKFIQSLLQLLQD---------SSCPETALDALATLLPHHPTTFRPFANKIE 157 (165)
T ss_pred hc----CCCchHHHHhhccHHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHCCccccchHHHHH
Confidence 32 223335677789999999999998874 126678999999999999998888865543
No 61
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.23 E-value=0.012 Score=52.10 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhhhcC---hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc
Q 046316 467 YARIFASVARFSSAIS---DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA 543 (966)
Q Consensus 467 r~Ra~~~l~~f~~~~~---~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 543 (966)
|..+++.++..+..++ .+.+..+++.++.++. |++..||.+||.|+.+++... +..+.++.+.|+..|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~-~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFD-DQDSRVRYYACEALYNISKVA-RGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCC
Confidence 4556777777776654 3677788888888876 668899999999999998764 3567789999999999999998
Q ss_pred ChhhHH
Q 046316 544 RDETLH 549 (966)
Q Consensus 544 ~~d~l~ 549 (966)
++.+..
T Consensus 81 d~~Vr~ 86 (97)
T PF12755_consen 81 DENVRS 86 (97)
T ss_pred chhHHH
Confidence 877543
No 62
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.20 E-value=3.8 Score=48.17 Aligned_cols=492 Identities=16% Similarity=0.191 Sum_probs=235.4
Q ss_pred HHhhhchHHHHHHHHHHHHHHHhccCC---CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHH
Q 046316 83 SSLDDTHRKICTAISMAVASIAAYDWP---EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLF 159 (966)
Q Consensus 83 ~~L~~~~~kIr~~~a~~Is~Ia~~D~P---~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~ 159 (966)
.+|.+.+.+||.-.|.+++.+|..-.| +...+.|.-|-..+++.. ....-+=|.+...++-.++.+--.-...+++
T Consensus 560 ~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hr-gk~laafLkAigyliplmd~eya~yyTrevm 638 (1172)
T KOG0213|consen 560 HGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHR-GKELAAFLKAIGYLIPLMDAEYASYYTREVM 638 (1172)
T ss_pred HhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHhhccccccHHHHHHhHHHHH
Confidence 456788999999999999999999988 456666666666666531 1222233444444444333322122334555
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhh-HhhhHHHHHHHHHHhcCCCCCCCCChhhHHHH
Q 046316 160 PVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALM-MPMLKPWMNHFSIILEHPVQPEDPDDWGVKME 238 (966)
Q Consensus 160 p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~ 238 (966)
-.+.+=++++. .++++..+|++..|...-+. . ++++ .+.++.++..|..-=. +.| -..-++
T Consensus 639 lil~rEf~sPD---eemkkivLKVv~qcc~t~Gv----~----~~y~r~dilp~ff~~fw~rrm----A~d---rr~ykq 700 (1172)
T KOG0213|consen 639 LILIREFGSPD---EEMKKIVLKVVKQCCATDGV----E----PAYIRFDILPEFFFSFWGRRM----ALD---RRNYKQ 700 (1172)
T ss_pred HHHHHhhCCCh---HHHHHHHHHHHHHHhcccCC----C----HHHHhhhhhHHHHhhhhhhhh----hcc---ccchhh
Confidence 56666666553 57889999999999865221 1 1111 2344444444322100 001 112345
Q ss_pred HHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcC
Q 046316 239 VLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGS 318 (966)
Q Consensus 239 ~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~ 318 (966)
++.+-..+..+.+.. .++..+...+ | | +.+ .+...+....+=+-+.+..
T Consensus 701 lv~ttv~ia~KvG~~------~~v~R~v~~l------k----------------d-e~e--~yrkm~~etv~ri~~~lg~ 749 (1172)
T KOG0213|consen 701 LVDTTVEIAAKVGSD------PIVSRVVLDL------K----------------D-EPE--QYRKMVAETVSRIVGRLGA 749 (1172)
T ss_pred HHHHHHHHHHHhCch------HHHHHHhhhh------c----------------c-ccH--HHHHHHHHHHHHHHhcccc
Confidence 555555555555431 0111000000 0 1 100 0122222222222222221
Q ss_pred hhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhCh---hhHHHHHHHH
Q 046316 319 AKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGR---EGIDAIIDAA 395 (966)
Q Consensus 319 ~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~---~~~~~l~~~i 395 (966)
..+-..+... ++..++ +.|-.+..++. .....+..++..++. ..++.++..+
T Consensus 750 ~diderleE~---lidgil-----------------~Afqeqtt~d~-----vml~gfg~V~~~lg~r~kpylpqi~sti 804 (1172)
T KOG0213|consen 750 ADIDERLEER---LIDGIL-----------------YAFQEQTTEDS-----VMLLGFGTVVNALGGRVKPYLPQICSTI 804 (1172)
T ss_pred ccccHHHHHH---HHHHHH-----------------HHHHhcccchh-----hhhhhHHHHHHHHhhccccchHHHHHHH
Confidence 1111111110 111111 11211111111 223445566666654 3466777777
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHH
Q 046316 396 SKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVA 475 (966)
Q Consensus 396 ~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~ 475 (966)
..++++ +..+.|.-+.-++++++..+..+.+ ..+...+..++...+. ..+|=+.+-.+-.+-
T Consensus 805 L~rLnn----------ksa~vRqqaadlis~la~Vlktc~e-----e~~m~~lGvvLyEylg---eeypEvLgsILgAik 866 (1172)
T KOG0213|consen 805 LWRLNN----------KSAKVRQQAADLISSLAKVLKTCGE-----EKLMGHLGVVLYEYLG---EEYPEVLGSILGAIK 866 (1172)
T ss_pred HHHhcC----------CChhHHHHHHHHHHHHHHHHHhccH-----HHHHHHhhHHHHHhcC---cccHHHHHHHHHHHH
Confidence 777754 2357778888889999887655533 2344445555444444 456655555444444
Q ss_pred HhhhhcC----hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccc-cHHHHHHHHHHHHhhcChhhHHH
Q 046316 476 RFSSAIS----DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQP-QMMGLFSSLADLLHQARDETLHL 550 (966)
Q Consensus 476 ~f~~~~~----~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p-~l~~il~~L~~ll~~~~~d~l~~ 550 (966)
.+...+. ..-...+++.+...|.+. ..-|+..++.-+..+++..+ +.+.+ -...|.=.|+.++..-.-+....
T Consensus 867 aI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~Iadrgp-E~v~aREWMRIcfeLlelLkahkK~iRRa 944 (1172)
T KOG0213|consen 867 AIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGP-EYVSAREWMRICFELLELLKAHKKEIRRA 944 (1172)
T ss_pred HHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443321 112445566665555532 44566666666666666543 33322 23345555666665544454444
Q ss_pred HHHHHHHHHhhcchhhcccccchH-HHHHHHHhhcC--ChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCCC
Q 046316 551 VLETLQAAIKAGFLTASMEPMISP-LILNIWALHVS--DPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQ 627 (966)
Q Consensus 551 ~le~l~~~i~~~~~~~~~~~~l~p-~~l~l~~~~~~--d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~ 627 (966)
..+++..+-+. |.| -++....++.+ +-+.|....=.+..++...+-| .++|.+.+--..+.
T Consensus 945 a~nTfG~Iaka----------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-----tVLPalmneYrtPe- 1008 (1172)
T KOG0213|consen 945 AVNTFGYIAKA----------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-----TVLPALMNEYRTPE- 1008 (1172)
T ss_pred HHhhhhHHHHh----------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-----hhhHHHHhhccCch-
Confidence 44444333221 112 12222232322 2222221111111111111111 35566655443332
Q ss_pred CCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhc
Q 046316 628 QPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISG 689 (966)
Q Consensus 628 ~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~ 689 (966)
.......|--++.+.++.. ++...++-.+.|.|-..+ ...|....|.|..+++.+...
T Consensus 1009 --~nVQnGVLkalsf~Feyig-emskdYiyav~PlleDAl-mDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1009 --ANVQNGVLKALSFMFEYIG-EMSKDYIYAVTPLLEDAL-MDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred --hHHHHhHHHHHHHHHHHHH-HHhhhHHHHhhHHHHHhh-ccccHHHHHHHHHHHHHHhcC
Confidence 2233455777777777764 444444444455555554 456778899999999988766
No 63
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.06 E-value=0.55 Score=59.70 Aligned_cols=273 Identities=19% Similarity=0.188 Sum_probs=154.3
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhH
Q 046316 79 KLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVL 158 (966)
Q Consensus 79 ~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l 158 (966)
+.|++.|.++++.||..++.+++.+.. |+.++.|...|.+. +......|+..|.++.+.....
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~~~--------- 686 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLPPA--------- 686 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCch---------
Confidence 355566778899999999998888742 45788888888774 7788888888888775543321
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHH
Q 046316 159 FPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKME 238 (966)
Q Consensus 159 ~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~ 238 (966)
+.+...+.+. +..+|..|+..+...- .... ..+...|.. .+..+|..
T Consensus 687 -~~L~~~L~~~---d~~VR~~A~~aL~~~~----------~~~~------------~~l~~~L~D-------~d~~VR~~ 733 (897)
T PRK13800 687 -PALRDHLGSP---DPVVRAAALDVLRALR----------AGDA------------ALFAAALGD-------PDHRVRIE 733 (897)
T ss_pred -HHHHHHhcCC---CHHHHHHHHHHHHhhc----------cCCH------------HHHHHHhcC-------CCHHHHHH
Confidence 2444455543 4678877665444311 0000 123344432 34568888
Q ss_pred HHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcC
Q 046316 239 VLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGS 318 (966)
Q Consensus 239 ~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~ 318 (966)
+++.|.++- .. ..+. .... |++ ..+...+.+-|..+-..
T Consensus 734 Av~aL~~~~----~~-----~~l~----------------~~l~----------D~~------~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 734 AVRALVSVD----DV-----ESVA----------------GAAT----------DEN------REVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhccc----Cc-----HHHH----------------HHhc----------CCC------HHHHHHHHHHHHHhccc
Confidence 888888641 10 0000 0111 111 34555555555544321
Q ss_pred hhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHH
Q 046316 319 AKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKR 398 (966)
Q Consensus 319 ~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~ 398 (966)
... . +..+..++ .|+ ...+|.+|...|..+... . .+...+.+.
T Consensus 773 ~~~--~--------~~~L~~ll------------------~D~---d~~VR~aA~~aLg~~g~~---~---~~~~~l~~a 815 (897)
T PRK13800 773 GAP--A--------GDAVRALT------------------GDP---DPLVRAAALAALAELGCP---P---DDVAAATAA 815 (897)
T ss_pred cch--h--------HHHHHHHh------------------cCC---CHHHHHHHHHHHHhcCCc---c---hhHHHHHHH
Confidence 110 0 00011111 111 255788888777666322 1 111223333
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhh
Q 046316 399 FNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFS 478 (966)
Q Consensus 399 l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~ 478 (966)
+. + .+|..|.+|..+||.+... + .+ ..+.+.++ ++++.+|..|.+.++++.
T Consensus 816 L~---------d-~d~~VR~~Aa~aL~~l~~~-----~------a~-----~~L~~~L~---D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 816 LR---------A-SAWQVRQGAARALAGAAAD-----V------AV-----PALVEALT---DPHLDVRKAAVLALTRWP 866 (897)
T ss_pred hc---------C-CChHHHHHHHHHHHhcccc-----c------hH-----HHHHHHhc---CCCHHHHHHHHHHHhccC
Confidence 32 2 3599999999999877431 0 01 12233444 889999999999999972
Q ss_pred hhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHh
Q 046316 479 SAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSE 515 (966)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~ 515 (966)
.++ .....+...+. |.+.-||..|.+||..
T Consensus 867 --~~~----~a~~~L~~al~-D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 867 --GDP----AARDALTTALT-DSDADVRAYARRALAH 896 (897)
T ss_pred --CCH----HHHHHHHHHHh-CCCHHHHHHHHHHHhh
Confidence 122 23334445555 5578899999999864
No 64
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.85 E-value=0.24 Score=51.85 Aligned_cols=186 Identities=15% Similarity=0.114 Sum_probs=104.6
Q ss_pred ccCCccchhhHHHHHHHHHHHHh-ChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCC
Q 046316 361 EDESTYSCRVSGALLLEEVVSYC-GREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGL 439 (966)
Q Consensus 361 e~d~~~s~R~aa~~lL~~L~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~ 439 (966)
+.+..|+-|..|..-|..++... +....+.+...+.+.+..... ...+. .-+.--.|+..++.++..+..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~--~l~d~-Rs~v~~~A~~~l~~l~~~l~~------ 86 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIK--QLSDL-RSKVSKTACQLLSDLARQLGS------ 86 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH---S-HH----HHHHHHHHHHHHHHHHGG------
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHH--HHhhh-HHHHHHHHHHHHHHHHHHHhH------
Confidence 34456999999999999998876 222234444444421111100 00011 123333455556666654421
Q ss_pred ccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHH-HHHHHhhhcCCCCCcEehhHHHHHHhhcc
Q 046316 440 TSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHF-LSAAITTIAMDVPPPVKVGACRALSELLP 518 (966)
Q Consensus 440 ~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~-l~~~~~~L~~~~~~~Vr~~A~~al~~~~~ 518 (966)
.+++++..++.+.+....+...+++.+|--++-.+.+..+ ....+ +..+..++ .+.+..||..++..+..++.
T Consensus 87 ---~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 87 ---HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGL-KSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp ---GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHH
Confidence 2455555555544443346789999999999999998875 12234 33333343 35578999999999999988
Q ss_pred cCC--CCCcccc--HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh
Q 046316 519 KAN--KGNFQPQ--MMGLFSSLADLLHQARDETLHLVLETLQAAIKA 561 (966)
Q Consensus 519 ~~~--~~~l~p~--l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~ 561 (966)
..+ ...+... ++.+...+..++++.+.++....-+++....+.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 743 3445543 578999999999999999888777777666554
No 65
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=1.3 Score=52.46 Aligned_cols=196 Identities=18% Similarity=0.205 Sum_probs=115.1
Q ss_pred EehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhh--cChhhHHHHHHHHHHHHhhcc---------hhhccc----
Q 046316 505 VKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQ--ARDETLHLVLETLQAAIKAGF---------LTASME---- 569 (966)
Q Consensus 505 Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~--~~~d~l~~~le~l~~~i~~~~---------~~~~~~---- 569 (966)
=|-.||++|+.|.+.-...+...-++ .+++.+.. .+.|.+..+|||+..++..+. .+..+.
T Consensus 39 DRR~A~rgLKa~srkYR~~Vga~Gmk----~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~ia 114 (970)
T KOG0946|consen 39 DRRDAVRGLKAFSRKYREEVGAQGMK----PLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIA 114 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccH----HHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHH
Confidence 47889999999986411112222333 33334433 344788899999988886541 111111
Q ss_pred ------ccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHH---HHHhhhcchHhhhcCCCCCCchhhHHHHHH
Q 046316 570 ------PMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQ---LASRILPYVGPILNNPQQQPDGLVAGSLDL 639 (966)
Q Consensus 570 ------~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~---l~~~~lP~l~~~l~~~~~~~~~~~~~al~l 639 (966)
...+..++..|. ..|-.+|..++.+|+++.+. |..... ..+.-+..+...+..+. .+...+++=+
T Consensus 115 e~fik~qd~I~lll~~~e--~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr---E~IRNe~iLl 189 (970)
T KOG0946|consen 115 EQFIKNQDNITLLLQSLE--EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR---EPIRNEAILL 189 (970)
T ss_pred HHHHcCchhHHHHHHHHH--hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh---hhhchhHHHH
Confidence 112233333332 23456788899999999865 432221 22233334444454432 2567788999
Q ss_pred HHHHhhcCChhHHHHHHHHHhHHHHHHHhc---cCchHHhhhhHHHHHHHHhcCc--cceeeeccCCcchHHHHHHHHH
Q 046316 640 LTMLLKSASTDVVKAAYDVCFDAVIRIILQ---SEDHSEMQNATECLATFISGGR--QLMLVWGGDSGFTMRSLLDAAS 713 (966)
Q Consensus 640 l~~l~~~~~~~l~~~~~~~~fp~l~~~l~~---s~d~~~lq~~~~~l~~~i~~~~--~~~~~~~~~~~~~l~~il~i~~ 713 (966)
|..++|..+.---=..|+.+|..|+.++.. .++.-|...++-.+.+++++.. ++|+. + ++|++.+.+++.
T Consensus 190 L~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr---E-~~~i~rL~klL~ 264 (970)
T KOG0946|consen 190 LSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR---E-GSYIPRLLKLLS 264 (970)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh---c-cccHHHHHhhcC
Confidence 999999877422222478889999999873 3344577888888888888644 33332 1 456666555444
No 66
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.58 E-value=6 Score=45.55 Aligned_cols=223 Identities=16% Similarity=0.205 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhhhhcCh----hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHH-h
Q 046316 467 YARIFASVARFSSAISD----GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLL-H 541 (966)
Q Consensus 467 r~Ra~~~l~~f~~~~~~----~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll-~ 541 (966)
..|...+.......+++ +....+++.+++......+...|.++++++..++...+.+. .+..+++.+..-. .
T Consensus 164 ~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~ 240 (415)
T PF12460_consen 164 QSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISS 240 (415)
T ss_pred cccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcc
Confidence 34444444444443332 23445777777665544468899999999999987632222 4444555555444 2
Q ss_pred hcChhhHHHHHHHHHHHHhh-----cchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CC----------
Q 046316 542 QARDETLHLVLETLQAAIKA-----GFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PG---------- 605 (966)
Q Consensus 542 ~~~~d~l~~~le~l~~~i~~-----~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~---------- 605 (966)
....+.....++.+.-+.+. ++.+ .++...++++ .+|+.+...+-..|+-+..- ++
T Consensus 241 ~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~----~~~~~~L~~l----L~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~v 312 (415)
T PF12460_consen 241 SEDSELRPQALEILIWITKALVMRGHPLA----TELLDKLLEL----LSSPELGQQAAKAFGILLSDSDDVLNKENHANV 312 (415)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHH----hCChhhHHHHHHHHhhHhcCcHHhcCccccchh
Confidence 23334555666666555443 2211 1233333333 45566666666666666522 11
Q ss_pred --cH-HHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHH
Q 046316 606 --CI-HQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATEC 682 (966)
Q Consensus 606 --~~-~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~ 682 (966)
-| ..++..++|.+..-+.+.... .-..-+--|+.+++++|.+....-...++|-+++.+ ...|.++.-+++++
T Consensus 313 klLykQR~F~~~~p~L~~~~~~~~~~---~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL-~~~~~~v~~s~L~t 388 (415)
T PF12460_consen 313 KLLYKQRFFTQVLPKLLEGFKEADDE---IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSL-SLPDADVLLSSLET 388 (415)
T ss_pred hhHHhHHHHHHHHHHHHHHHhhcChh---hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 23 347888889888877754321 233446778899999997665555566778877777 45677899999999
Q ss_pred HHHHHhcCccceeeeccCCcchHHHHHHH
Q 046316 683 LATFISGGRQLMLVWGGDSGFTMRSLLDA 711 (966)
Q Consensus 683 l~~~i~~~~~~~~~~~~~~~~~l~~il~i 711 (966)
|..++...++.+ .++++.++..
T Consensus 389 L~~~l~~~~~~i-------~~hl~sLI~~ 410 (415)
T PF12460_consen 389 LKMILEEAPELI-------SEHLSSLIPR 410 (415)
T ss_pred HHHHHHcCHHHH-------HHHHHHHHHH
Confidence 999999875443 2355555443
No 67
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.53 E-value=6.3 Score=45.46 Aligned_cols=200 Identities=17% Similarity=0.181 Sum_probs=116.5
Q ss_pred cChhHHHHHHHHHHhhhcCC-CCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHH---H
Q 046316 481 ISDGVLEHFLSAAITTIAMD-VPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETL---Q 556 (966)
Q Consensus 481 ~~~~~~~~~l~~~~~~L~~~-~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l---~ 556 (966)
+++..-..++..++.+++.+ ....+-..+..+.-.-. .-.-+||+++|+..++++++.-.-+......+.+ .
T Consensus 557 ~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl----~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~ 632 (975)
T COG5181 557 FDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSL----EFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLA 632 (975)
T ss_pred ccHHHHHHHHHHHHHHHHhccccccEEEecccceeeeh----hhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 45566778999999999853 23334344444332222 2346899999999999999888777665544444 3
Q ss_pred HHHhhcchhhcccccchHHHHHHHHhh--cCChhHHHHHHHHHHHHHcCC--CcHHHHHHhhhcchHhhhcCCCCCCchh
Q 046316 557 AAIKAGFLTASMEPMISPLILNIWALH--VSDPFISIDAIEVLEAIKCSP--GCIHQLASRILPYVGPILNNPQQQPDGL 632 (966)
Q Consensus 557 ~~i~~~~~~~~~~~~l~p~~l~l~~~~--~~d~~~~~~~~~~l~~l~~~~--~~~~~l~~~~lP~l~~~l~~~~~~~~~~ 632 (966)
.+++.-.-+ +.+..+=.+...+ ..+|.+...++..+.++.++- ....+=...++|.+..|+.+... -.
T Consensus 633 ~vlk~c~e~-----~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~---Kv 704 (975)
T COG5181 633 KVLKACGET-----KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQ---KV 704 (975)
T ss_pred HHHHhcchH-----HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhH---HH
Confidence 344321100 1112111222333 345655555555555444331 13334456788999999987543 35
Q ss_pred hHHHHHHHHHHhhcCChhHHHH-HHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHh-cCccce
Q 046316 633 VAGSLDLLTMLLKSASTDVVKA-AYDVCFDAVIRIILQSEDHSEMQNATECLATFIS-GGRQLM 694 (966)
Q Consensus 633 ~~~al~ll~~l~~~~~~~l~~~-~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~-~~~~~~ 694 (966)
+...+.++..+.+++|.-.+.. .+.-||. |+..+ +|+..++..+|.+.|..+-+ .|++.+
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMRIcfe-Lvd~L-ks~nKeiRR~A~~tfG~Is~aiGPqdv 766 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMRICFE-LVDSL-KSWNKEIRRNATETFGCISRAIGPQDV 766 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHHHHHH-HHHHH-HHhhHHHHHhhhhhhhhHHhhcCHHHH
Confidence 6788999999998887432221 2223343 23333 58888999999998876544 344433
No 68
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=95.52 E-value=0.56 Score=45.38 Aligned_cols=152 Identities=18% Similarity=0.256 Sum_probs=89.9
Q ss_pred HHHHHHHHhhh-----ch-HHHHHHHHHHHHHHHhccCC-CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcccc
Q 046316 77 IRKLLLSSLDD-----TH-RKICTAISMAVASIAAYDWP-EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDA 149 (966)
Q Consensus 77 IR~~Ll~~L~~-----~~-~kIr~~~a~~Is~Ia~~D~P-~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~ 149 (966)
||..|+..|.. ++ +.+|..++.+...| .++| +.|++|.+.+...-.+ ++ ..|..++.++.--+..+
T Consensus 4 ikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v--~~~~~~~W~eL~d~Ils~~~~--e~---~kA~~IF~~L~~~l~~e 76 (174)
T PF04510_consen 4 IKPLLISCLTMQETKESDFKILRRIVSHVAYEV--FDLQEGGWDELSDCILSLSEN--EP---VKAFHIFICLPMPLYGE 76 (174)
T ss_pred hHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHH--HhcCCCCchhHHHHHHHhhcc--ch---HHHHHHHHhCCchhhhh
Confidence 67777777732 23 44444445444444 2445 4799999887775422 22 56777777766444445
Q ss_pred chhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHH-HHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCC
Q 046316 150 IVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSI-VYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPE 228 (966)
Q Consensus 150 ~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~ 228 (966)
-+.+....++|.+.+.+.++..++.+....|+.. |...++.+... ...+.+.+.++..+.....+++..
T Consensus 77 fl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~------~~~~~vk~L~~~mv~Sv~elV~~g---- 146 (174)
T PF04510_consen 77 FLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESS------MRVDLVKELLPKMVKSVKELVERG---- 146 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHHcc----
Confidence 5678889999999999998865556655555532 33344433211 112445566666667777777652
Q ss_pred CCChhhHHHHHHHHHHHHH
Q 046316 229 DPDDWGVKMEVLKCLNQFI 247 (966)
Q Consensus 229 d~~~~~lk~~~~~~L~~l~ 247 (966)
.+..+-.++++-+.+++
T Consensus 147 --~E~~~l~rgl~~~e~~v 163 (174)
T PF04510_consen 147 --MEVGFLRRGLRDFESFV 163 (174)
T ss_pred --cHHHHHHHHHHHHHHHH
Confidence 12234445555555444
No 69
>PRK09687 putative lyase; Provisional
Probab=95.40 E-value=0.19 Score=54.17 Aligned_cols=175 Identities=14% Similarity=0.076 Sum_probs=103.1
Q ss_pred ccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccH
Q 046316 365 TYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRL 444 (966)
Q Consensus 365 ~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~ 444 (966)
.+.+|.+|...|..++..-... .+.+...+...+. + .+|+.|.++..++|.+.+. -.+
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~---------D-~~~~VR~~a~~aLg~~~~~-----------~ai 161 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLY-SPKIVEQSQITAF---------D-KSTNVRFAVAFALSVINDE-----------AAI 161 (280)
T ss_pred CHHHHHHHHHHHhccccccccc-chHHHHHHHHHhh---------C-CCHHHHHHHHHHHhccCCH-----------HHH
Confidence 3678989988888775432111 1122222222221 2 2689999999999877531 012
Q ss_pred HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCC
Q 046316 445 GELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGN 524 (966)
Q Consensus 445 ~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~ 524 (966)
+. | ...++ ++.+.+|..|.+.+|++... ++ ...+.++..|. |.+..||..|+.+|..+-+
T Consensus 162 ~~-L----~~~L~---d~~~~VR~~A~~aLg~~~~~-~~----~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~~------ 221 (280)
T PRK09687 162 PL-L----INLLK---DPNGDVRNWAAFALNSNKYD-NP----DIREAFVAMLQ-DKNEEIRIEAIIGLALRKD------ 221 (280)
T ss_pred HH-H----HHHhc---CCCHHHHHHHHHHHhcCCCC-CH----HHHHHHHHHhc-CCChHHHHHHHHHHHccCC------
Confidence 11 2 23344 77889999999999998222 22 45555666665 5578999999999986321
Q ss_pred ccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHH
Q 046316 525 FQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLE 598 (966)
Q Consensus 525 l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~ 598 (966)
+..+..|.+.++.. +....+.+++..+=. ...+|.+.++ .+...|+.++..+.+.++
T Consensus 222 -----~~av~~Li~~L~~~--~~~~~a~~ALg~ig~---------~~a~p~L~~l-~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 -----KRVLSVLIKELKKG--TVGDLIIEAAGELGD---------KTLLPVLDTL-LYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -----hhHHHHHHHHHcCC--chHHHHHHHHHhcCC---------HhHHHHHHHH-HhhCCChhHHHHHHHHHh
Confidence 12334444444432 233444455433321 1456888888 444448888887777654
No 70
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.38 E-value=0.014 Score=45.72 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHhhhhcC---hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhh
Q 046316 464 PFLYARIFASVARFSSAIS---DGVLEHFLSAAITTIAMDVPPPVKVGACRALSEL 516 (966)
Q Consensus 464 ~~Lr~Ra~~~l~~f~~~~~---~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~ 516 (966)
|-+|..|+|++|++++..+ .+....+++.++..|.++ +..||..||.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 5689999999999776543 256677788888887644 458999999999763
No 71
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.36 E-value=1 Score=55.69 Aligned_cols=74 Identities=8% Similarity=0.154 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHH
Q 046316 302 DSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVS 381 (966)
Q Consensus 302 ~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~ 381 (966)
+.++..+++-++.+++..-++ |+++.+++..+.|++|. ||.|| |.++..+|.+..+
T Consensus 670 E~Viv~aL~~ls~Lik~~ll~---K~~v~~i~~~v~PlL~h-----------PN~WI----------R~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 670 EAVIVSALGSLSILIKLGLLR---KPAVKDILQDVLPLLCH-----------PNLWI----------RRAVLGIIAAIAR 725 (1431)
T ss_pred hhhHHHHHHHHHHHHHhcccc---hHHHHHHHHhhhhheeC-----------chHHH----------HHHHHHHHHHHHh
Confidence 578889999999998765443 57888899999999986 56666 6678888888888
Q ss_pred HhCh-hhHHHHHHHHHHHH
Q 046316 382 YCGR-EGIDAIIDAASKRF 399 (966)
Q Consensus 382 ~~~~-~~~~~l~~~i~~~l 399 (966)
.++. ++.-.+++.|...+
T Consensus 726 ~ls~advyc~l~P~irpfl 744 (1431)
T KOG1240|consen 726 QLSAADVYCKLMPLIRPFL 744 (1431)
T ss_pred hhhhhhheEEeehhhHHhh
Confidence 7765 22233444444444
No 72
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.34 E-value=7 Score=44.79 Aligned_cols=230 Identities=15% Similarity=0.194 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHHHhcchhhH---HhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHH
Q 046316 233 WGVKMEVLKCLNQFIQNFPSLAE---SEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLF 309 (966)
Q Consensus 233 ~~lk~~~~~~L~~l~~~f~~~~~---~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~ 309 (966)
...|-.++++|+++...||..+. +.+...+...-.. ...|.-..+-. .|...++++++..+-
T Consensus 317 v~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~----IstyAITtLLK-----------TGt~e~idrLv~~I~ 381 (898)
T COG5240 317 VVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRT----ISTYAITTLLK-----------TGTEETIDRLVNLIP 381 (898)
T ss_pred HHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhccccc----chHHHHHHHHH-----------cCchhhHHHHHHHHH
Confidence 45778899999999999996543 3333332211111 11231111111 133345688888888
Q ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhc--ccCCccchhhHHHHHHHHHHHHhCh--
Q 046316 310 EFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLAD--EDESTYSCRVSGALLLEEVVSYCGR-- 385 (966)
Q Consensus 310 efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~d--e~d~~~s~R~aa~~lL~~L~~~~~~-- 385 (966)
.|++-+-..-+. +....+..+ .+-++.+..-. -.|+.+ -.+..|-.+.++.+.+.++.+.-++
T Consensus 382 sfvhD~SD~FKi--I~ida~rsL------sl~Fp~k~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~sk 448 (898)
T COG5240 382 SFVHDMSDGFKI--IAIDALRSL------SLLFPSKKLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSK 448 (898)
T ss_pred HHHHhhccCceE--EeHHHHHHH------HhhCcHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHH
Confidence 888776533221 111111111 11122221110 123221 1134566788888888888887754
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCCh
Q 046316 386 -EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYP 464 (966)
Q Consensus 386 -~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 464 (966)
.+++.++.+|.. ....+-++..+|.++... ... ..|- . +..+|.+-+- -++.
T Consensus 449 EraLe~LC~fIED----------------cey~~I~vrIL~iLG~Eg---P~a-~~P~---~-yvrhIyNR~i---LEN~ 501 (898)
T COG5240 449 ERALEVLCTFIED----------------CEYHQITVRILGILGREG---PRA-KTPG---K-YVRHIYNRLI---LENN 501 (898)
T ss_pred HHHHHHHHHHHhh----------------cchhHHHHHHHHHhcccC---CCC-CCcc---h-HHHHHHHHHH---Hhhh
Confidence 234555555432 223445677777765421 111 1121 1 2223333222 4678
Q ss_pred hHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhc
Q 046316 465 FLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELL 517 (966)
Q Consensus 465 ~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~ 517 (966)
++|+.|..++++|+-..+.....+-...+++...+|++..||-.|.-+++++=
T Consensus 502 ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 502 IVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 99999999999998765433333333333333234667889999988888653
No 73
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.90 E-value=0.47 Score=49.66 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=101.0
Q ss_pred CchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHH---HHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh---h
Q 046316 411 TVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLE---QMITEDIGTGVHQYPFLYARIFASVARFSSAISD---G 484 (966)
Q Consensus 411 ~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~---~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~---~ 484 (966)
..+|..|..+|--+..+..+- .... .+-.+...+. ..+...+. +...-+...||.+++.++..+.. .
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~--~~~~--~~~~~~~~l~~~~~~i~~~l~---d~Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGN--APED--FPPDFVECLRQLLDAIIKQLS---DLRSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH---B-------HHHHHHHH---HHHHH-S----HH---HHHHHHHHHHHHHHHHGGGGHH
T ss_pred ccCHHHHHHHHHHHHHHHHcC--Cccc--cHHHHHHHHHHhHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 346999999999888876542 0000 0111223333 22223333 56667888899999999887643 4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHH-HHHHHHHHhhcChhhHHHHHHHHHHHHhhcc
Q 046316 485 VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGL-FSSLADLLHQARDETLHLVLETLQAAIKAGF 563 (966)
Q Consensus 485 ~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~i-l~~L~~ll~~~~~d~l~~~le~l~~~i~~~~ 563 (966)
....+++.++..+. +....+|.+|..+|..+++... +.+.+ +..+...++.-.......+++.+..++...+
T Consensus 91 ~~~~~l~~Ll~~~~-~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 91 YADILLPPLLKKLG-DSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHc-cccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 56677777777766 4467899999999999997642 22333 3444455555555677778888877775533
Q ss_pred -hhhcccc-cchHHHHHHHHhhc--CChhHHHHHHHHHHHHHcC-CCcHHHHHHhhhcch
Q 046316 564 -LTASMEP-MISPLILNIWALHV--SDPFISIDAIEVLEAIKCS-PGCIHQLASRILPYV 618 (966)
Q Consensus 564 -~~~~~~~-~l~p~~l~l~~~~~--~d~~~~~~~~~~l~~l~~~-~~~~~~l~~~~lP~l 618 (966)
....+.. ...+.+.....+.. .+|.+|..+..+|..+... |+.-..+.+.+=|.+
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~ 223 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNI 223 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----------
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcc
Confidence 1111111 11233444445554 4567999999999888633 443333333333333
No 74
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.83 E-value=9 Score=46.47 Aligned_cols=128 Identities=17% Similarity=0.232 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHH-HH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHF-LS 491 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~-l~ 491 (966)
+...|=.||..++.+...= + ++.++ .-|...++ ++|+++|..|..++.++.+. +++..... +.
T Consensus 105 N~~iR~~AlR~ls~l~~~e----------l-~~~~~-~~ik~~l~---d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~ 168 (757)
T COG5096 105 NEEIRGFALRTLSLLRVKE----------L-LGNII-DPIKKLLT---DPHAYVRKTAALAVAKLYRL-DKDLYHELGLI 168 (757)
T ss_pred CHHHHHHHHHHHHhcChHH----------H-HHHHH-HHHHHHcc---CCcHHHHHHHHHHHHHHHhc-CHhhhhcccHH
Confidence 4678888999888874320 1 12222 22333444 89999999999999998754 33444455 55
Q ss_pred HHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHH----hhcChhhHHHHHHHHHHHHh
Q 046316 492 AAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLL----HQARDETLHLVLETLQAAIK 560 (966)
Q Consensus 492 ~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll----~~~~~d~l~~~le~l~~~i~ 560 (966)
.....|..|.++.|...|..++..+.+. ...+|...+...+-++. ....+-.+...+|.+..-..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e----~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~ 237 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE----LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVP 237 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh----hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCC
Confidence 5666666677888888899999887654 34555555544444433 11123345555666655443
No 75
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=8.6 Score=46.02 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=74.1
Q ss_pred cHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCC
Q 046316 443 RLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANK 522 (966)
Q Consensus 443 ~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~ 522 (966)
|+--++.+.+.++|+ +.+.|+.+-|+-++|+. .++|+...+++.+-+.|+. .++-||-.|+.|...|+...+
T Consensus 103 dvllLltNslknDL~---s~nq~vVglAL~alg~i---~s~EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P- 174 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLN---SSNQYVVGLALCALGNI---CSPEMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVP- 174 (866)
T ss_pred HHHHHHHHHHHhhcc---CCCeeehHHHHHHhhcc---CCHHHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCc-
Confidence 566678999999998 89999999999999987 4678888888888888874 477899999999999987632
Q ss_pred CCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh
Q 046316 523 GNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKA 561 (966)
Q Consensus 523 ~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~ 561 (966)
+.+.-++ ....+++.+-..-++...+--+.+.+++
T Consensus 175 ~l~e~f~----~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 175 DLVEHFV----IAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred hHHHHhh----HHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 2222222 2333444444444444444444444444
No 76
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.52 E-value=2 Score=47.10 Aligned_cols=199 Identities=19% Similarity=0.220 Sum_probs=117.7
Q ss_pred HHHHHhhhcCCCCCcEehhHHHHHHhhcccC-CCCCccccHHHHHHHHHHHHhhcChhhHHHH---HHHHHHHHhhcchh
Q 046316 490 LSAAITTIAMDVPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFSSLADLLHQARDETLHLV---LETLQAAIKAGFLT 565 (966)
Q Consensus 490 l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~---le~l~~~i~~~~~~ 565 (966)
+...+..+. +...-.|..|..+|...+... ..+.+......++..+.+.++....+....+ +.-+.-.+|.....
T Consensus 45 L~~~Id~l~-eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLT-EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 555556655 334567888888888877652 2345666677788888888876654333333 33333333321222
Q ss_pred hcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC----CCcHHHHHHhhhc-ch-HhhhcCCC-------CCCchh
Q 046316 566 ASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS----PGCIHQLASRILP-YV-GPILNNPQ-------QQPDGL 632 (966)
Q Consensus 566 ~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~----~~~~~~l~~~~lP-~l-~~~l~~~~-------~~~~~~ 632 (966)
..+...+.|.+.++.......+..|..+..||..++-. ++.+.... .++- ++ ..+...+. .+...+
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~-~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM-ESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH-HHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 23334566777777444444556777777777665521 33333111 1111 11 11122111 112368
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 633 VAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 633 ~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
+..||+-|+.|+-.+|.......+...+|.+..+| .++|.++.-.|++++.-+...+.
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL-~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLEEALPALSELL-DSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh
Confidence 89999999999988886333345677789888876 57799999999999987766544
No 77
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=2.2 Score=50.69 Aligned_cols=135 Identities=18% Similarity=0.153 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh-hHHHHHHH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD-GVLEHFLS 491 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~-~~~~~~l~ 491 (966)
+|..|=-|+..+|++--. .+..++..-+...++ +.+|++|..+..++.++...-+. ..-..++.
T Consensus 99 np~iR~lAlrtm~~l~v~------------~i~ey~~~Pl~~~l~---d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~ 163 (734)
T KOG1061|consen 99 NPLIRALALRTMGCLRVD------------KITEYLCDPLLKCLK---DDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVD 163 (734)
T ss_pred CHHHHHHHhhceeeEeeh------------HHHHHHHHHHHHhcc---CCChhHHHHHHHHHHHhhcCChhhccccchhH
Confidence 688888888887776321 122222222333444 89999999999999988764211 11223344
Q ss_pred HHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc
Q 046316 492 AAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF 563 (966)
Q Consensus 492 ~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~ 563 (966)
.+-..+. |.++.|.+.|..|+..+.+..+....--...+++..++..++++++=....+|+++......++
T Consensus 164 ~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 164 ALKDLLS-DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred HHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence 4334443 5566777889999998877643223333445677888899999998888889999887765543
No 78
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.26 E-value=0.2 Score=44.37 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChh---HHHHHHHHH
Q 046316 417 REATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDG---VLEHFLSAA 493 (966)
Q Consensus 417 rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~---~~~~~l~~~ 493 (966)
|-|+|.++.+++..+.. ++..++..++.|.+....++.+.+|.-||..+..++.....+ .+.++|..+
T Consensus 3 R~ggli~Laa~ai~l~~---------~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L 73 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGK---------DISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDAL 73 (97)
T ss_pred hhHHHHHHHHHHHHchH---------hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999988876532 255566666666665445899999999999999998876543 455666666
Q ss_pred HhhhcCCCCCcEehhHH
Q 046316 494 ITTIAMDVPPPVKVGAC 510 (966)
Q Consensus 494 ~~~L~~~~~~~Vr~~A~ 510 (966)
.+.+. |.+..||.+|.
T Consensus 74 ~kl~~-D~d~~Vr~~a~ 89 (97)
T PF12755_consen 74 CKLSA-DPDENVRSAAE 89 (97)
T ss_pred HHHHc-CCchhHHHHHH
Confidence 66544 66778877764
No 79
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.91 E-value=9.4 Score=47.75 Aligned_cols=130 Identities=11% Similarity=0.135 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHHHhChhhH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHH
Q 046316 368 CRVSGALLLEEVVSYCGREGI-DAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGE 446 (966)
Q Consensus 368 ~R~aa~~lL~~L~~~~~~~~~-~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~ 446 (966)
+|.+-.+-|..||..||+.-. ..++.++-..|+. ++|+.|=|-+--+-.++-.+. .-.+++
T Consensus 594 Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLND----------kDw~LR~aFfdsI~gvsi~VG--------~rs~se 655 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKEKSNDVILSHLITFLND----------KDWRLRGAFFDSIVGVSIFVG--------WRSVSE 655 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcC----------ccHHHHHHHHhhccceEEEEe--------eeeHHH
Confidence 455555558888888887432 3455555555542 379888664443332221110 112444
Q ss_pred HHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhh--cChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 447 LLEQMITEDIGTGVHQYPFLYARIFASVARFSSA--ISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 447 ~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~--~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
++.-.+.+.+. ++.+++-.+|+-+++-..+. +.+....++++.+...|..+ +.=||-.+|.-|....+.
T Consensus 656 yllPLl~Q~lt---D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 656 YLLPLLQQGLT---DGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP-NLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHhcc---CcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc-hHHHHHHHHHHHHHHHhh
Confidence 44444444454 88899999999999988774 55667788888888887643 566888888777766553
No 80
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.91 E-value=0.35 Score=47.68 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh----hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 444 LGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD----GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 444 ~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~----~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
+..+..+ +...++ +..+.-|-.++.+++..++.-+. +...+.+..+++.|+.+.+..++..|+.++..++..
T Consensus 23 l~~l~~r-i~~LL~---s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 23 LHKLVTR-INSLLQ---SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHH-HHHHhC---CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3343433 445555 66677777788777777766433 445677888888888766778889999999999875
Q ss_pred C------CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc
Q 046316 520 A------NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF 563 (966)
Q Consensus 520 ~------~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~ 563 (966)
. .++...|.++.+++.++++++. .+....+++++...+...+
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 2 2366789999999999999987 5567788888888888765
No 81
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.81 E-value=0.12 Score=40.41 Aligned_cols=55 Identities=24% Similarity=0.153 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHh
Q 046316 414 WRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARF 477 (966)
Q Consensus 414 w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f 477 (966)
|+.|++++.+||.++....+... ++ +...+. .+.+.++ ++++-+|..|+|++|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~----~~-~~~~~~-~L~~~L~---d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ----PY-LPELLP-ALIPLLQ---DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH----HH-HHHHHH-HHHHHTT---SSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH----HH-HHHHHH-HHHHHHc---CCCHHHHHHHHHHHhcC
Confidence 88999999999987643221111 11 222222 2223444 67779999999999963
No 82
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.81 E-value=10 Score=46.24 Aligned_cols=328 Identities=15% Similarity=0.146 Sum_probs=161.2
Q ss_pred HHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhc-Ch-h-HHHHHHHHH
Q 046316 417 REATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAI-SD-G-VLEHFLSAA 493 (966)
Q Consensus 417 rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~-~~-~-~~~~~l~~~ 493 (966)
-.++++++..+++...-... +..-++-.+|..+ +. +++.=+.--+..++.+.+-.- +. . ....+++.+
T Consensus 266 lrv~~~lLlNLAed~~ve~k--M~~~~iV~~Lv~~----Ld---r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL 336 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVELK--MVNKGIVSLLVKC----LD---RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKL 336 (708)
T ss_pred HHHHHHHHHHHhcChHHHHH--HHhcCCHHHHHHH----Hc---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHH
Confidence 34788888888865321110 0011222223333 33 344445555555555554321 11 1 122356666
Q ss_pred HhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHH--HHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc--hhhccc
Q 046316 494 ITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMG--LFSSLADLLHQARDETLHLVLETLQAAIKAGF--LTASME 569 (966)
Q Consensus 494 ~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~--il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~--~~~~~~ 569 (966)
+..+..+ +..++-.|.+.|.++.-+. .+++.+.. ++..|..++.+.. ....++..+..+...+. ..-.+
T Consensus 337 ~kLl~s~-~~~l~~~aLrlL~NLSfd~---~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~- 409 (708)
T PF05804_consen 337 LKLLPSE-NEDLVNVALRLLFNLSFDP---ELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAY- 409 (708)
T ss_pred HHHhcCC-CHHHHHHHHHHHHHhCcCH---HHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhh-
Confidence 6666544 4566777999998887552 23333322 3455556665432 22334444433322222 11122
Q ss_pred ccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHH-hhhcchHhh-hcCCCCCCchhhHHHHHHHHHHhhcC
Q 046316 570 PMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLAS-RILPYVGPI-LNNPQQQPDGLVAGSLDLLTMLLKSA 647 (966)
Q Consensus 570 ~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~-~~lP~l~~~-l~~~~~~~~~~~~~al~ll~~l~~~~ 647 (966)
...+|.++++...+ .++.+...++.++-.++..+.+-..+++ ..+|.+... +... .+ ..+-++..+..+-
T Consensus 410 TdcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~----D~---lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 410 TDCIPQLMQMLLEN-SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR----DP---LLLKLIRNISQHD 481 (708)
T ss_pred cchHHHHHHHHHhC-CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc----cH---HHHHHHHHHHhcC
Confidence 23468888875544 3343333444444455544443333333 334444333 2221 11 1233444444443
Q ss_pred ChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchH--HHHHHHHHhhcCCCCCCc-c
Q 046316 648 STDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTM--RSLLDAASRLLNPDLESS-G 724 (966)
Q Consensus 648 ~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l--~~il~i~~~lL~~~~~~~-~ 724 (966)
+ +.-.. +......+..++..+++.+..-.++.+|.|+-..+ +.|. ..+ ..++..+.++|.|...+. -
T Consensus 482 ~-~~k~~-f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~----ld~~----~ll~~~~llp~L~~~L~~g~~~dDl 551 (708)
T PF05804_consen 482 G-PLKEL-FVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD----LDWA----QLLQEYNLLPWLKDLLKPGASEDDL 551 (708)
T ss_pred c-hHHHH-HHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC----cCHH----HHHHhCCHHHHHHHHhCCCCCChHH
Confidence 2 33332 33345667777766677788878888888875432 1231 122 145667777777664332 2
Q ss_pred ccchHHHHHHHHHhCChhhhHhHH--HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhh
Q 046316 725 SLFVGSYILQLILHLPSQMAQHIR--DLVAALVRRLQSAQI-AGLRSSLLLIFARLVHM 780 (966)
Q Consensus 725 ~~~vg~Lv~~li~~~~~~l~~~l~--~iL~a~~~rL~~~~~-~~~~~~li~vfa~l~~~ 780 (966)
...+.-++.++.. ...-++.+- +++.+++.-|...+. ..++-.++.+|-+++.+
T Consensus 552 ~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 552 LLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred HHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC
Confidence 2233323322221 112234432 556666666655443 67777789999999876
No 83
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=9.1 Score=45.40 Aligned_cols=171 Identities=13% Similarity=0.208 Sum_probs=90.3
Q ss_pred hCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHH
Q 046316 352 IDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQL 431 (966)
Q Consensus 352 ~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l 431 (966)
.-|||||| .+...| ||+-...+.++++++.|.+.|.. .+.+ .|--|++|++++-..
T Consensus 109 QHPNEyiR----------G~TLRF---LckLkE~ELlepl~p~IracleH---------rhsY-VRrNAilaifsIyk~- 164 (948)
T KOG1058|consen 109 QHPNEYIR----------GSTLRF---LCKLKEPELLEPLMPSIRACLEH---------RHSY-VRRNAILAIFSIYKN- 164 (948)
T ss_pred cCchHhhc----------chhhhh---hhhcCcHHHhhhhHHHHHHHHhC---------cchh-hhhhhheeehhHHhh-
Confidence 35899986 222333 44445567789999999998875 2223 444455666666432
Q ss_pred HHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhH------HHHHH-HHHHHhhhh--c------------------Chh
Q 046316 432 LEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFL------YARIF-ASVARFSSA--I------------------SDG 484 (966)
Q Consensus 432 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~L------r~Ra~-~~l~~f~~~--~------------------~~~ 484 (966)
.+.. . .|...++..++..+.....-.+.|+ +.||+ |+.+.+... + .++
T Consensus 165 ~~~L----~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~ 239 (948)
T KOG1058|consen 165 FEHL----I-PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA 239 (948)
T ss_pred hhhh----c-CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH
Confidence 1111 1 1344455555544322111112222 44565 444433322 1 134
Q ss_pred HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHh-hcChhhHHHHHHHHHHH
Q 046316 485 VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLH-QARDETLHLVLETLQAA 558 (966)
Q Consensus 485 ~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~-~~~~d~l~~~le~l~~~ 558 (966)
...++++.+++.|++. +..|+..|+.++..+... ++.+++-. +.++.++. +.++.....+++-|+..
T Consensus 240 ~~~~~i~~i~~lL~st-ssaV~fEaa~tlv~lS~~--p~alk~Aa----~~~i~l~~kesdnnvklIvldrl~~l 307 (948)
T KOG1058|consen 240 EKARYIRCIYNLLSST-SSAVIFEAAGTLVTLSND--PTALKAAA----STYIDLLVKESDNNVKLIVLDRLSEL 307 (948)
T ss_pred HhhHHHHHHHHHHhcC-CchhhhhhcceEEEccCC--HHHHHHHH----HHHHHHHHhccCcchhhhhHHHHHHH
Confidence 4557778888888755 667778887777655433 34444444 44555553 33444555555555544
No 84
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.66 E-value=2.9 Score=47.86 Aligned_cols=223 Identities=19% Similarity=0.206 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccC-c---------HHHHHHHHhhhcccccc--------cc-cc--CCC
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQ-P---------AAVLLKHFIKKHWQEGE--------ES-FE--LPA 68 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~-p---------A~i~LKn~I~~~W~~~~--------~~-~~--~~~ 68 (966)
.|..-+.+++....|||+..|.....-|..+... + ..=.|-+||...=.... .+ +. ..+
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~p 209 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVP 209 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCC
Confidence 4567788899999999999999999999986652 3 11223344432111000 00 01 236
Q ss_pred CChHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcc---cCchhhHhHHHHHHHHHHh
Q 046316 69 VSSEEKEVIRKLLLSSLDDTH-RKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITD---QSNMNGVHGGLRCLALLSA 144 (966)
Q Consensus 69 i~~~~K~~IR~~Ll~~L~~~~-~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s---~~~~~~~~~aL~~L~~l~~ 144 (966)
+.++.|..+++.|+.+...+. .....++++|+.++...| |.|...++..|-. .++...--.-|.-+.++++
T Consensus 210 lk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-----p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 210 LKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-----PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp --HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH------GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-----chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Confidence 899999999999999975544 677899999999999887 3455555554421 1344445556677778888
Q ss_pred hccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCC
Q 046316 145 DLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHP 224 (966)
Q Consensus 145 ~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~ 224 (966)
.+..++|..+...+|..+-..+++.+ .++-.+|+.++..- .....+.++-...++.+...|...
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~h---~qVAErAl~~w~n~-------------~~~~li~~~~~~i~p~i~~~L~~~ 348 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSPH---FQVAERALYFWNNE-------------YFLSLISQNSRVILPIIFPALYRN 348 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSSS---HHHHHHHHGGGGSH-------------HHHHHHHCTHHHHHHHHHHHHSST
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHCCH-------------HHHHHHHhChHHHHHHHHHHHHHH
Confidence 78888899999999999999998775 45555555544321 111222333344445555555432
Q ss_pred CCCCCCChh--hHHHHHHHHHHHHHHhcchhhHHh
Q 046316 225 VQPEDPDDW--GVKMEVLKCLNQFIQNFPSLAESE 257 (966)
Q Consensus 225 ~~~~d~~~~--~lk~~~~~~L~~l~~~f~~~~~~~ 257 (966)
. ...| .++..+..++..+.+--|+.+.+.
T Consensus 349 ~----~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 349 S----KNHWNQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp T----SS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred H----HHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 1 1334 588888888888777666665543
No 85
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.61 E-value=11 Score=40.24 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=107.0
Q ss_pred CCChhHHHHHHHHHHHhhhhcChh-----HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDG-----VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSS 535 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~-----~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~ 535 (966)
++.+..|+||..+++...+.++++ ....+++-..+.|. | ...-..|..++..++... ..-......+++.
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D--~~~~~~~l~gl~~L~~~~--~~~~~~~~~i~~~ 84 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-D--HACVQPALKGLLALVKMK--NFSPESAVKILRS 84 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-c--HhhHHHHHHHHHHHHhCc--CCChhhHHHHHHH
Confidence 788999999999999998887642 23333344444443 2 222234466666666431 1112224455555
Q ss_pred HHHHHh--hcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHc---CCCcHHH
Q 046316 536 LADLLH--QARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKC---SPGCIHQ 609 (966)
Q Consensus 536 L~~ll~--~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~---~~~~~~~ 609 (966)
+++-.. .....+...+.+-+...+.... ....+...++.-+++. ....+||--...+.+++..+.. .+.....
T Consensus 85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~-~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~ 163 (262)
T PF14500_consen 85 LFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQL-IDGEKDPRNLLLSFKLLKVILQEFDISEFAED 163 (262)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 544221 1111233333333333332221 2223334555666666 6788999665566666666652 2333444
Q ss_pred HHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcC--ChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHH
Q 046316 610 LASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSA--STDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFI 687 (966)
Q Consensus 610 l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~--~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i 687 (966)
+.+.+...+=-.+..+-.+.++... =|+-..+.+.. .+.+. ..+||.++.-+. |+...+..+++..|...+
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~--edLk~~L~~cl~s~~~fa----~~~~p~LleKL~-s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITR--EDLKRALRNCLSSTPLFA----PFAFPLLLEKLD-STSPSVKLDSLQTLKACI 236 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCH--HHHHHHHHHHhcCcHhhH----HHHHHHHHHHHc-CCCcHHHHHHHHHHHHHH
Confidence 4444444443344544322222221 12222222222 22232 356899999886 444445555555555555
Q ss_pred h
Q 046316 688 S 688 (966)
Q Consensus 688 ~ 688 (966)
.
T Consensus 237 ~ 237 (262)
T PF14500_consen 237 E 237 (262)
T ss_pred H
Confidence 4
No 86
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.42 E-value=2.5 Score=53.80 Aligned_cols=171 Identities=13% Similarity=0.060 Sum_probs=82.6
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLL 540 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll 540 (966)
++.+.+|..|...++++.. + +.+...+. |.+..||..|+.+|..+-.... ..+..|..++
T Consensus 725 D~d~~VR~~Av~aL~~~~~---~-------~~l~~~l~-D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll 784 (897)
T PRK13800 725 DPDHRVRIEAVRALVSVDD---V-------ESVAGAAT-DENREVRIAVAKGLATLGAGGA---------PAGDAVRALT 784 (897)
T ss_pred CCCHHHHHHHHHHHhcccC---c-------HHHHHHhc-CCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHh
Confidence 5556666666666665411 1 11223333 4456677777776665533210 0134455566
Q ss_pred hhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHh
Q 046316 541 HQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGP 620 (966)
Q Consensus 541 ~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~ 620 (966)
.+.+.+....++++|...-.. ..+.+.+...+ ...|+.+|..+...|..+. . +..+|.+..
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~--------~~~~~~l~~aL--~d~d~~VR~~Aa~aL~~l~---~------~~a~~~L~~ 845 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCP--------PDDVAAATAAL--RASAWQVRQGAARALAGAA---A------DVAVPALVE 845 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCc--------chhHHHHHHHh--cCCChHHHHHHHHHHHhcc---c------cchHHHHHH
Confidence 655555666666666544221 01212222221 2345667766665554432 1 233466666
Q ss_pred hhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHH
Q 046316 621 ILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLA 684 (966)
Q Consensus 621 ~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~ 684 (966)
.++.+. ......++..|..+ ..++.. -+.|...+ +.+|.+|.+.+..+|.
T Consensus 846 ~L~D~~---~~VR~~A~~aL~~~--~~~~~a--------~~~L~~al-~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 846 ALTDPH---LDVRKAAVLALTRW--PGDPAA--------RDALTTAL-TDSDADVRAYARRALA 895 (897)
T ss_pred HhcCCC---HHHHHHHHHHHhcc--CCCHHH--------HHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 665442 23444555555543 111111 23334433 4667778887777765
No 87
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.36 E-value=0.76 Score=46.00 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHH
Q 046316 415 RMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAI 494 (966)
Q Consensus 415 ~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~ 494 (966)
..|-.++.++|-++-... .+ +++++.. +...++ +++|.+|..|+.++.+....=.-..-.+++..++
T Consensus 3 ~vR~n~i~~l~DL~~r~~--------~~-ve~~~~~-l~~~L~---D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l 69 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP--------NL-VEPYLPN-LYKCLR---DEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL 69 (178)
T ss_pred HHHHHHHHHHHHHHHhCc--------HH-HHhHHHH-HHHHHC---CCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH
Confidence 455567777776654321 11 4555543 334565 8999999999999999876511122345556666
Q ss_pred hhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHh-----hcChhhHHHHHHHHHHHHh
Q 046316 495 TTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLH-----QARDETLHLVLETLQAAIK 560 (966)
Q Consensus 495 ~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~-----~~~~d~l~~~le~l~~~i~ 560 (966)
.++. |.+..||..|..++..+.....++.+...++.++..+-.... ....+....++..+...+.
T Consensus 70 ~~l~-D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 70 KLLV-DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHc-CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 7765 557889999999999988764445666666644444433322 2333455666666666665
No 88
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.13 E-value=0.54 Score=43.04 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=74.3
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCc-----cchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchh
Q 046316 78 RKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDW-----PDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVP 152 (966)
Q Consensus 78 R~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~W-----P~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~ 152 (966)
-+.+++.|.+++..+|..++.++..++... |+.+ .+.++.+.+.+.++ ++..+..++.+|..++..-....-.
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcHHHHHH
Confidence 345667777888999999999999999763 3322 37888999999884 8889999999999998764321111
Q ss_pred hhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Q 046316 153 KLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSC 187 (966)
Q Consensus 153 ~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~ 187 (966)
.+-..+++.+.+++... +..++..++.++.++
T Consensus 87 ~~~~g~l~~l~~~l~~~---~~~~~~~a~~~l~~l 118 (120)
T cd00020 87 VLEAGGVPKLVNLLDSS---NEDIQKNATGALSNL 118 (120)
T ss_pred HHHCCChHHHHHHHhcC---CHHHHHHHHHHHHHh
Confidence 12234788888888754 356776666665543
No 89
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.02 E-value=0.46 Score=41.02 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHH
Q 046316 412 VWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLS 491 (966)
Q Consensus 412 ~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~ 491 (966)
.+|..|..++.++|.+.+. +..+.+.. .++ ++++.+|..|++.+|++.. .+.++
T Consensus 12 ~~~~vr~~a~~~L~~~~~~------------~~~~~L~~----~l~---d~~~~vr~~a~~aL~~i~~-------~~~~~ 65 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDP------------EAIPALIE----LLK---DEDPMVRRAAARALGRIGD-------PEAIP 65 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHH------------HHHHHHHH----HHT---SSSHHHHHHHHHHHHCCHH-------HHTHH
T ss_pred CCHHHHHHHHHHHHHcCCH------------hHHHHHHH----HHc---CCCHHHHHHHHHHHHHhCC-------HHHHH
Confidence 3589999999999966431 12222333 334 7999999999999999842 34666
Q ss_pred HHHhhhcCCCCCcEehhHHHHHH
Q 046316 492 AAITTIAMDVPPPVKVGACRALS 514 (966)
Q Consensus 492 ~~~~~L~~~~~~~Vr~~A~~al~ 514 (966)
.+...+.++.+..||..|+.||.
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 67777776656788999998874
No 90
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.74 E-value=15 Score=40.19 Aligned_cols=160 Identities=21% Similarity=0.182 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHhC-----hhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCcccc
Q 046316 369 RVSGALLLEEVVSYCG-----REGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVR 443 (966)
Q Consensus 369 R~aa~~lL~~L~~~~~-----~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~ 443 (966)
+..|..++.-++-..| ...+..+.+.+.+.+... ....+.|-+|+.++|.+.-...... -+
T Consensus 103 ~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~--------s~~~~~R~~~~~aLai~~fv~~~d~------~~ 168 (309)
T PF05004_consen 103 QALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDS--------SASPKARAACLEALAICTFVGGSDE------EE 168 (309)
T ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCC--------ccchHHHHHHHHHHHHHHHhhcCCh------hH
Confidence 4456666776666655 234455555555555431 2235778899988888764321111 11
Q ss_pred HH---HHHHHHHhh-hhcC-C------CCCChhHHHHHHHHHHHhhhhcCh----hHHHHHHHHHHhhhcCCCCCcEehh
Q 046316 444 LG---ELLEQMITE-DIGT-G------VHQYPFLYARIFASVARFSSAISD----GVLEHFLSAAITTIAMDVPPPVKVG 508 (966)
Q Consensus 444 ~~---~~l~~~i~~-~l~~-~------~~~~~~Lr~Ra~~~l~~f~~~~~~----~~~~~~l~~~~~~L~~~~~~~Vr~~ 508 (966)
+. ..+..+..- ..+. + ..+.+-+.+.|+-.-+-....++. ......++.+...|.++ +.-||++
T Consensus 169 ~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~-d~~VRiA 247 (309)
T PF05004_consen 169 TEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD-DVDVRIA 247 (309)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CHHHHHH
Confidence 22 222211110 0111 1 122467788887555666666654 23444566666666544 7899999
Q ss_pred HHHHHHhhcccC---CCCCccccHHHHHHHHHHHHhhc
Q 046316 509 ACRALSELLPKA---NKGNFQPQMMGLFSSLADLLHQA 543 (966)
Q Consensus 509 A~~al~~~~~~~---~~~~l~p~l~~il~~L~~ll~~~ 543 (966)
|..+|.-+.+.. ..+...+....+++.+-.|..+.
T Consensus 248 AGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 248 AGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 999999887753 12345667777777777777654
No 91
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.29 E-value=29 Score=40.91 Aligned_cols=116 Identities=13% Similarity=0.131 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCCHHHhHHHHHHHHhhccC-c-HHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHhhhchHHH
Q 046316 15 LLNCLSATLDPNQEVRSFAEVSLNQASLQ-P-AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKI 92 (966)
Q Consensus 15 l~~~L~~~ls~d~~~R~~AE~~L~~~~~~-p-A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L~~~~~kI 92 (966)
....|..+ .|...+..+-..+-...+. + +=.+-=++|.++|.. |+ .+.+ .--+.++.+..|.+..|
T Consensus 8 ~~~~L~~a--~d~~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~-FP-----~l~~----~Ai~a~~DLcEDed~~i 75 (556)
T PF05918_consen 8 NYEILADA--KDKSQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKH-FP-----DLQE----EAINAQLDLCEDEDVQI 75 (556)
T ss_dssp HHHHHHHT--GGGGGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC--G-----GGHH----HHHHHHHHHHT-SSHHH
T ss_pred HHhHhhcC--CCcccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-Ch-----hhHH----HHHHHHHHHHhcccHHH
Confidence 34455553 4555555555555544443 3 334455677777762 11 1222 23356777888899999
Q ss_pred HHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHh
Q 046316 93 CTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSA 144 (966)
Q Consensus 93 r~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~ 144 (966)
|.++--.+..+++.. |+.-+-+.+.|.++|++. ++..+...=.+|..+++
T Consensus 76 R~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~td-d~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 76 RKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTD-DPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HHHHHHHGGGG--T---T-HHHHHHHHHHHTT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHh
Confidence 999999999999865 666688999999999874 65544444444444444
No 92
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=1.8 Score=47.01 Aligned_cols=139 Identities=18% Similarity=0.115 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh--hH--HHH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD--GV--LEH 488 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~--~~--~~~ 488 (966)
.-..||+||.-+.-+.+.+....+ -.++. .+..++. .++ +.++-||.+|.|++|..+..-|+ +. -..
T Consensus 96 ~le~ke~ald~Le~lve~iDnAnd----l~~~g-gl~~ll~-~l~---~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~ 166 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNAND----LISLG-GLVPLLG-YLE---NSDAELRELAARVIGTAVQNNPKSQEQVIELG 166 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHh----Hhhcc-CHHHHHH-Hhc---CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc
Confidence 468899999999988887643221 01111 1222232 444 78899999999999999887442 11 112
Q ss_pred HHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCC--CCccccHHHHHHHHHHHHhhcChh--hHHHHHHHHHHHHhhc
Q 046316 489 FLSAAITTIAMDVPPPVKVGACRALSELLPKANK--GNFQPQMMGLFSSLADLLHQARDE--TLHLVLETLQAAIKAG 562 (966)
Q Consensus 489 ~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~--~~l~p~l~~il~~L~~ll~~~~~d--~l~~~le~l~~~i~~~ 562 (966)
++..++..|..+++..+|..|..|+..++++... ..+.+. . =++.|..+++.-..+ ....++.-+..+...+
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~-~-G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL-N-GYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc-C-CHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 6778888888777889999999999999987421 111111 1 146667777664333 3444455555555443
No 93
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.07 E-value=1.4 Score=46.58 Aligned_cols=179 Identities=13% Similarity=0.169 Sum_probs=106.0
Q ss_pred CCChhHHHHHHHHHHHhhhh-cChhHHHH--HHHHHHhhhcCCCCCcEehhHHHHHHhhccc-CCCCCccccHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSA-ISDGVLEH--FLSAAITTIAMDVPPPVKVGACRALSELLPK-ANKGNFQPQMMGLFSSL 536 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~-~~~~~~~~--~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~-~~~~~l~p~l~~il~~L 536 (966)
+..|+++.+|++++|..+.. .+.+.... .+..+.+.|. +++..||..|..|+.++... .....++.|++.+++.+
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~-~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~ 102 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLN-DPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEET 102 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcC-CCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Confidence 67899999999999997543 22222222 2444445544 45788999999999998765 34456777777666655
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCc-HHHHHHhhh
Q 046316 537 ADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGC-IHQLASRIL 615 (966)
Q Consensus 537 ~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~-~~~l~~~~l 615 (966)
... ..+.+.-...+..|...--.+.+...+.. .+|.++.+|.. .+...+..+..+|-.|+..|.. ..-+..+++
T Consensus 103 ~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~-~i~~ll~LL~~--G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~ 177 (254)
T PF04826_consen 103 VSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLAN-YIPDLLSLLSS--GSEKTKVQVLKVLVNLSENPDMTRELLSAQVL 177 (254)
T ss_pred hcC--CCCCHHHHHHHHHHHccCCCcchhhhHHh-hHHHHHHHHHc--CChHHHHHHHHHHHHhccCHHHHHHHHhccch
Confidence 441 12333333344444443111111111112 34667788754 4556777788888888877764 334456777
Q ss_pred cchHhhhcCCCCCCchhhHHHHHHHHHHhhcC
Q 046316 616 PYVGPILNNPQQQPDGLVAGSLDLLTMLLKSA 647 (966)
Q Consensus 616 P~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~ 647 (966)
+.+...++.+.. .+.+-.++-+...+-++.
T Consensus 178 ~~~~~Lf~~~~~--~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 178 SSFLSLFNSSES--KENLLRVLTFFENINENI 207 (254)
T ss_pred hHHHHHHccCCc--cHHHHHHHHHHHHHHHhh
Confidence 788888876532 234455555555554443
No 94
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.77 E-value=0.88 Score=48.38 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh----hHHHHHH
Q 046316 415 RMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD----GVLEHFL 490 (966)
Q Consensus 415 ~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~----~~~~~~l 490 (966)
..||-+..|+|.++..-..+.+.-...=-++++|. .+.+ ...|--+.+.+-|+++..+...+| ....+.+
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~-----ll~s-s~~~ismlRn~TWtLSNlcRGknP~P~w~~isqal 245 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLG-----LLLS-SAIHISMLRNATWTLSNLCRGKNPPPDWSNISQAL 245 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHH-----HHHh-ccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHH
Confidence 56888999999998643222211000001333332 2221 134445666788999999987432 4566667
Q ss_pred HHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcc
Q 046316 491 SAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM-MGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASM 568 (966)
Q Consensus 491 ~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~ 568 (966)
+.+.+.+-.. +.-|-+-||.|+..+.+.. .+.++-.+ ..+...|..++...+--....++..+..++.-+. .+..+
T Consensus 246 piL~KLiys~-D~evlvDA~WAiSYlsDg~-~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqvi 323 (526)
T COG5064 246 PILAKLIYSR-DPEVLVDACWAISYLSDGP-NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVI 323 (526)
T ss_pred HHHHHHHhhc-CHHHHHHHHHHHHHhccCc-HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehh
Confidence 6666665432 4556688999999877642 12222111 1122456666655444445556666655553322 22111
Q ss_pred c-ccchHHHHHHHHhhcCChhHHHHHHHHHHHHH-cCCC-cHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhh
Q 046316 569 E-PMISPLILNIWALHVSDPFISIDAIEVLEAIK-CSPG-CIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLK 645 (966)
Q Consensus 569 ~-~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~-~~~~-~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~ 645 (966)
. --..+.+..+ ..+.++ -+|-.+.=.+..+. +..+ .-.-+..-++|.+...|.... +-.--+|+=-++....
T Consensus 324 I~~G~L~a~~~l-Ls~~ke-~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae---~k~kKEACWAisNats 398 (526)
T COG5064 324 INCGALKAFRSL-LSSPKE-NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE---YKIKKEACWAISNATS 398 (526)
T ss_pred eecccHHHHHHH-hcChhh-hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH---HHHHHHHHHHHHhhhc
Confidence 1 0122444444 223333 23332222222222 1111 122244567888888876431 1112233323333333
Q ss_pred cCC--hhHHHHHHHH-HhHHHHHHHhccCchHHhhhhHHHHHHHHhcCcc
Q 046316 646 SAS--TDVVKAAYDV-CFDAVIRIILQSEDHSEMQNATECLATFISGGRQ 692 (966)
Q Consensus 646 ~~~--~~l~~~~~~~-~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~ 692 (966)
++- |+....++++ +..+|+.++. ..|.-+.+-++.|+++.+..|..
T Consensus 399 gg~~~PD~iryLv~qG~IkpLc~~L~-~~dNkiiev~LD~~eniLk~Ge~ 447 (526)
T COG5064 399 GGLNRPDIIRYLVSQGFIKPLCDLLD-VVDNKIIEVALDAIENILKVGEQ 447 (526)
T ss_pred cccCCchHHHHHHHccchhHHHHHHh-ccCccchhhhHHHHHHHHhhhhH
Confidence 221 2333333333 3466777664 34556777788888888887654
No 95
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=91.67 E-value=5.5 Score=44.70 Aligned_cols=193 Identities=17% Similarity=0.229 Sum_probs=117.0
Q ss_pred HHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhcc--hh
Q 046316 489 FLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDE-TLHLVLETLQAAIKAGF--LT 565 (966)
Q Consensus 489 ~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d-~l~~~le~l~~~i~~~~--~~ 565 (966)
+....++.+......-=|-.|..-|........-.+=..|...|+..++..+.+.+++ ....++..|...+...+ +.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~ 366 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF 366 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence 3444444444221122234465556555544333445677888889999999986665 56677888888887654 11
Q ss_pred hcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHh
Q 046316 566 ASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLL 644 (966)
Q Consensus 566 ~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~ 644 (966)
...+-.+ .-+++. ++...|..++.++.+|+..+++. |. .++-.|..++.+. .++-...++-+++-++
T Consensus 367 DstE~ai-~K~Lea-a~ds~~~v~~~Aeed~~~~las~~P~-------~~I~~i~~~Ilt~---D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 367 DSTEIAI-CKVLEA-AKDSQDEVMRVAEEDCLTTLASHLPL-------QCIVNISPLILTA---DEPRAVAVIKMLTKLF 434 (516)
T ss_pred chHHHHH-HHHHHH-HhCCchhHHHHHHHHHHHHHHhhCch-------hHHHHHhhHHhcC---cchHHHHHHHHHHHHH
Confidence 1111112 233343 44455567888888899888865 53 2222333333332 2344556778899999
Q ss_pred hcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc-cce
Q 046316 645 KSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGR-QLM 694 (966)
Q Consensus 645 ~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~-~~~ 694 (966)
+..+.+..-.++..+.|.+++-. .|....+...+.-||-+++..-+ +.+
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay-~S~SS~VRKtaVfCLVamv~~vG~~~m 484 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAY-DSTSSTVRKTAVFCLVAMVNRVGMEEM 484 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHh-cCchHHhhhhHHHhHHHHHHHHhHHhh
Confidence 99986554445666777777764 46667889999999998877533 544
No 96
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.67 E-value=0.26 Score=45.27 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=63.6
Q ss_pred CCChhHHHHHHHHHHHhhhhcCh---hHHH-HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISD---GVLE-HFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSL 536 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~---~~~~-~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L 536 (966)
+.++.+|..++|+++.++...+. .... ..++.+++.|.+ .+..||..|+.++.+++...+.......-..++..+
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l 96 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKL 96 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHH
Confidence 56689999999999999876432 2222 566777777764 477899999999999987642111111112356777
Q ss_pred HHHHhhcChhhHHHHHHHHHH
Q 046316 537 ADLLHQARDETLHLVLETLQA 557 (966)
Q Consensus 537 ~~ll~~~~~d~l~~~le~l~~ 557 (966)
.+++++.+.++...++.++..
T Consensus 97 ~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 97 VNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 777777766666666655544
No 97
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=1.7 Score=48.83 Aligned_cols=133 Identities=17% Similarity=0.243 Sum_probs=96.7
Q ss_pred HHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh---hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCC
Q 046316 448 LEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD---GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGN 524 (966)
Q Consensus 448 l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~---~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~ 524 (966)
+.+++....+...+++..+|+-||-.+|.-++..|. .+....+.+++.+|-++.+..|...|.++|....+......
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence 334433333333467789999999999999888653 56778899999999877778999999999999988754567
Q ss_pred ccccHHHHHHHHHHHHhhcChhhH---HHHHHHHHHHHhhcc---hhhcccccchHHHHHHH
Q 046316 525 FQPQMMGLFSSLADLLHQARDETL---HLVLETLQAAIKAGF---LTASMEPMISPLILNIW 580 (966)
Q Consensus 525 l~p~l~~il~~L~~ll~~~~~d~l---~~~le~l~~~i~~~~---~~~~~~~~l~p~~l~l~ 580 (966)
+.+|+.++--.+.++......+.. ..+.+.+....+... |+......+.|+++.+|
T Consensus 336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~ 397 (533)
T KOG2032|consen 336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQ 397 (533)
T ss_pred hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeC
Confidence 899999888888888877766643 334555555554432 55444456778888774
No 98
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=90.97 E-value=7 Score=43.13 Aligned_cols=126 Identities=12% Similarity=0.172 Sum_probs=69.5
Q ss_pred CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChh---HHHHHHHHHhHHHHHHHhccCchHHhhhhH
Q 046316 604 PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTD---VVKAAYDVCFDAVIRIILQSEDHSEMQNAT 680 (966)
Q Consensus 604 ~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~---l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~ 680 (966)
.+....+.+.+.-.....+..+..++.+....-..++..+++.+++. +++..+..++..+.-.+ +...+++-..|+
T Consensus 108 ~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~-kh~~~~I~~~~L 186 (319)
T PF08767_consen 108 QPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGF-KHTNREISETGL 186 (319)
T ss_dssp CCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHH-TSSSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHh-CCCcHHHHHHHH
Confidence 44555555555544445555554444455566688889999887643 34444333333333333 467889999999
Q ss_pred HHHHHHHhcCcc-------ceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHH
Q 046316 681 ECLATFISGGRQ-------LMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLI 736 (966)
Q Consensus 681 ~~l~~~i~~~~~-------~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li 736 (966)
.++..++.+... +|.+ .-++..+-+++.-+.++... ++--.-+.++..++
T Consensus 187 ~~l~~ll~~~~~~~~~~~~~F~~-----~y~~~il~~if~vltD~~Hk-~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 187 NILLELLNNVSKTNPEFANQFYQ-----QYYLDILQDIFSVLTDSDHK-SGFKLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHHHHHH-SHHHHHHHHH-----HHHHHHHHHHHHHHHSTT-G-GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH-----HHHHHHHHHHHHHHHCcccH-HHHHHHHHHHHHHH
Confidence 999998886544 1211 12344444455555555422 33334445555555
No 99
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=43 Score=40.34 Aligned_cols=244 Identities=14% Similarity=0.180 Sum_probs=118.4
Q ss_pred ccchhhHHHHHHHHHHHHhChhhHHHHHH---HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCcc
Q 046316 365 TYSCRVSGALLLEEVVSYCGREGIDAIID---AASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTS 441 (966)
Q Consensus 365 ~~s~R~aa~~lL~~L~~~~~~~~~~~l~~---~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~ 441 (966)
.+-+|..|..+|..+..++|.+.-..++. .|..++.-.. +. .-.+|..+++++..+......... -
T Consensus 135 DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~------Ds-rE~IRNe~iLlL~eL~k~n~~IQK----l 203 (970)
T KOG0946|consen 135 DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR------DS-REPIRNEAILLLSELVKDNSSIQK----L 203 (970)
T ss_pred chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh------hh-hhhhchhHHHHHHHHHccCchHHH----H
Confidence 47889999999999999999765433332 2223222110 11 235788888888777544221111 1
Q ss_pred ccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhh-c-ChhHHH--HHHHHHHhhhcC----CCC----CcEehh-
Q 046316 442 VRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSA-I-SDGVLE--HFLSAAITTIAM----DVP----PPVKVG- 508 (966)
Q Consensus 442 ~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~-~-~~~~~~--~~l~~~~~~L~~----~~~----~~Vr~~- 508 (966)
+.++..|.+.+--.-..+....+++---|+.++-..... . +..++. .+++.+.+.|.. |.. -.=|+.
T Consensus 204 VAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~N 283 (970)
T KOG0946|consen 204 VAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQN 283 (970)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHH
Confidence 234444444321111123345567878888777776654 1 112211 244444433321 110 123344
Q ss_pred ---HHHHHHhhcccCCCCCcc-c-----cHHHHHHHHHHHHhhc--ChhhHHHHHHHHHHHHhhcc-----hhhcccccc
Q 046316 509 ---ACRALSELLPKANKGNFQ-P-----QMMGLFSSLADLLHQA--RDETLHLVLETLQAAIKAGF-----LTASMEPMI 572 (966)
Q Consensus 509 ---A~~al~~~~~~~~~~~l~-p-----~l~~il~~L~~ll~~~--~~d~l~~~le~l~~~i~~~~-----~~~~~~~~l 572 (966)
|...++.++.-.+..... . .-..+++.|+.++-.. .-|.+...+-|+..++..+. |+....+.+
T Consensus 284 v~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~ 363 (970)
T KOG0946|consen 284 VIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSI 363 (970)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCC
Confidence 333333333221111111 1 1123566777666433 44677777777777765432 221111111
Q ss_pred ---hHHHHHHHHhh--cCCh-hHHHHHHHHHHHHH-cCCCcHHHHHHhhhcchH
Q 046316 573 ---SPLILNIWALH--VSDP-FISIDAIEVLEAIK-CSPGCIHQLASRILPYVG 619 (966)
Q Consensus 573 ---~p~~l~l~~~~--~~d~-~~~~~~~~~l~~l~-~~~~~~~~l~~~~lP~l~ 619 (966)
.|.++-+|... .+.| -+|+++.-||.+.. ...+.-..+..+++|.-.
T Consensus 364 ~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~ 417 (970)
T KOG0946|consen 364 PNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSST 417 (970)
T ss_pred CCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhc
Confidence 13333344433 3344 37888888888876 333333444455555433
No 100
>PF05536 Neurochondrin: Neurochondrin
Probab=90.83 E-value=9.8 Score=45.23 Aligned_cols=181 Identities=20% Similarity=0.188 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHcCCCcH-HHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHH
Q 046316 588 FISIDAIEVLEAIKCSPGCI-HQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRI 666 (966)
Q Consensus 588 ~~~~~~~~~l~~l~~~~~~~-~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~ 666 (966)
.+...++.++.+++..|+.- .+=.-..+|.+..++..... ...+.+++++|..+. ..+.+--..+-....|.|+++
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~--~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSD--LETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHH
Confidence 45667788888888755521 22234558999999876543 367899999999999 445433333223457888888
Q ss_pred HhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCCh---h-
Q 046316 667 ILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPS---Q- 742 (966)
Q Consensus 667 l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~---~- 742 (966)
+.+ ....++.+..++.+.+...... .|... ...+..++.-+.+.++. ..+..++.++.++..++...+. .
T Consensus 149 ~~~--~~~~~E~Al~lL~~Lls~~~~~--~~~~~-~~~l~~il~~La~~fs~-~~~~~kfell~~L~~~L~~~~~~~~~~ 222 (543)
T PF05536_consen 149 IPN--QSFQMEIALNLLLNLLSRLGQK--SWAED-SQLLHSILPSLARDFSS-FHGEDKFELLEFLSAFLPRSPILPLES 222 (543)
T ss_pred HHh--CcchHHHHHHHHHHHHHhcchh--hhhhh-HHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHhcCcCCcccccc
Confidence 765 3445778888888888875543 34322 34566666666666652 3456677888999998888842 1
Q ss_pred -h-hHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 046316 743 -M-AQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARL 777 (966)
Q Consensus 743 -l-~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l 777 (966)
. ..++..+...+...|++.-++.-+...+...+.+
T Consensus 223 ~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 223 PPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASL 259 (543)
T ss_pred CChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 2355666666655555433344444444444444
No 101
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=3.3 Score=44.65 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=90.8
Q ss_pred CCChhHHHHHHHHHHHhhhhc-C----hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHH-HHHH
Q 046316 461 HQYPFLYARIFASVARFSSAI-S----DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMM-GLFS 534 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~-~----~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~-~il~ 534 (966)
+..+=+|.+|+-.+|.++-.- . .+.-+++..+++..+. +++..||..|..|++++..+. ++..|... .-+.
T Consensus 219 s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd-~~s~kvkcqA~lALrnlasdt--~Yq~eiv~ag~lP 295 (550)
T KOG4224|consen 219 SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD-DGSDKVKCQAGLALRNLASDT--EYQREIVEAGSLP 295 (550)
T ss_pred cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh-CCChHHHHHHHHHHhhhcccc--hhhhHHHhcCCch
Confidence 678899999999999875321 0 1223346777777765 557889999999999987653 22222110 0112
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHH--Hhhcc-hhhccc-ccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCC-c-HH
Q 046316 535 SLADLLHQARDETLHLVLETLQAA--IKAGF-LTASME-PMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPG-C-IH 608 (966)
Q Consensus 535 ~L~~ll~~~~~d~l~~~le~l~~~--i~~~~-~~~~~~-~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~-~-~~ 608 (966)
.+..++ ..+....+++.+..+ ++.++ ....+. .-+...+..+ .++..+..+...+.+.|..|+.+.+ . -.
T Consensus 296 ~lv~Ll---qs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrl-L~~~dnEeiqchAvstLrnLAasse~n~~~ 371 (550)
T KOG4224|consen 296 LLVELL---QSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRL-LRAGDNEEIQCHAVSTLRNLAASSEHNVSV 371 (550)
T ss_pred HHHHHH---hCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHH-HhcCCchhhhhhHHHHHHHHhhhhhhhhHH
Confidence 344444 345667777777666 66655 222222 2344556666 4455555688888999998885422 1 12
Q ss_pred HHHHhhhcchHhhh
Q 046316 609 QLASRILPYVGPIL 622 (966)
Q Consensus 609 ~l~~~~lP~l~~~l 622 (966)
-...-.+|.+...+
T Consensus 372 i~esgAi~kl~eL~ 385 (550)
T KOG4224|consen 372 IRESGAIPKLIELL 385 (550)
T ss_pred HhhcCchHHHHHHH
Confidence 22334455554444
No 102
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.60 E-value=0.82 Score=54.90 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=100.2
Q ss_pred HHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhc
Q 046316 489 FLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTAS 567 (966)
Q Consensus 489 ~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~ 567 (966)
+++.+++.+. ..+.-+|--=..+|.+.+.+.+++.+.|.++.++..|++.+.-.+-+.....++++.......+ ..+.
T Consensus 868 ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 868 IVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 3444444443 2234455556677888888878899999999999999999988888888889999988887776 6666
Q ss_pred ccccchHHHHHHHHhhcCC-h-hHHHHHHHHHHHHHc-CCC-cHHHHHHhhhcchHhhhcCC
Q 046316 568 MEPMISPLILNIWALHVSD-P-FISIDAIEVLEAIKC-SPG-CIHQLASRILPYVGPILNNP 625 (966)
Q Consensus 568 ~~~~l~p~~l~l~~~~~~d-~-~~~~~~~~~l~~l~~-~~~-~~~~l~~~~lP~l~~~l~~~ 625 (966)
..+.++|.++.+ .+..++ + .+|..|+.|+.+|.. .|. ...++...++..+..+++.+
T Consensus 947 ~~~Tlvp~lLsl-s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 947 HLSTLVPYLLSL-SSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred HHhHHHHHHHhc-CCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH
Confidence 777899999988 444333 2 478999999999997 565 34456677777777777643
No 103
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=90.21 E-value=1.8 Score=42.91 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc--
Q 046316 486 LEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-- 563 (966)
Q Consensus 486 ~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-- 563 (966)
...++...+.+|. +...|-|.-|..++..+++....+.+.|.+|+++--|...++.-+.++...+|++|+..+...+
T Consensus 36 y~~~Lpif~dGL~-Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLR-ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhh-ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3467777778876 3467889999999999998855678999999999999999999999999999999988865433
Q ss_pred --hhhcccccchHHHHHHHH-hh---------cCChhHHHHHHHHHHHHHcC
Q 046316 564 --LTASMEPMISPLILNIWA-LH---------VSDPFISIDAIEVLEAIKCS 603 (966)
Q Consensus 564 --~~~~~~~~l~p~~l~l~~-~~---------~~d~~~~~~~~~~l~~l~~~ 603 (966)
.-..+..+|.|. +++|. ++ .++..+...+.+.|+.+...
T Consensus 115 G~aLvPyyrqLLp~-ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~ 165 (183)
T PF10274_consen 115 GEALVPYYRQLLPV-LNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERN 165 (183)
T ss_pred hHHHHHHHHHHHHH-HHHHHhcccCCCcccccccccchhHHHHHHHHHHHHh
Confidence 111122233332 22222 22 12344666777888888755
No 104
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.15 E-value=2.2 Score=42.71 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=66.9
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhH
Q 046316 79 KLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVL 158 (966)
Q Consensus 79 ~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l 158 (966)
..+...|.|++..||.++..+++.+...||-.-.+.++..++.++.+. |+.....|-.+|.++....... .....
T Consensus 28 ~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~-~~~Ir~~A~~~~~e~~~~~~~~----~i~~~ 102 (178)
T PF12717_consen 28 PNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE-NPEIRSLARSFFSELLKKRNPN----IIYNN 102 (178)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC-CHHHHHHHHHHHHHHHHhccch----HHHHH
Confidence 346677889999999999999999999998765677779999999875 8888999999999988765433 34555
Q ss_pred HHHHHHHhcCC
Q 046316 159 FPVLHTIVSFP 169 (966)
Q Consensus 159 ~p~L~~i~~~~ 169 (966)
||.+..-+++.
T Consensus 103 ~~e~i~~l~~~ 113 (178)
T PF12717_consen 103 FPELISSLNNC 113 (178)
T ss_pred HHHHHHHHhCc
Confidence 66666666543
No 105
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=90.13 E-value=41 Score=38.78 Aligned_cols=308 Identities=15% Similarity=0.174 Sum_probs=136.6
Q ss_pred CccchHHHHHHHhcccC---chhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Q 046316 111 DWPDLLPFLLKLITDQS---NMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSC 187 (966)
Q Consensus 111 ~WP~Ll~~L~~~l~s~~---~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~ 187 (966)
.=++|+..|++.+..++ |+-....-||++..+-+++.. ....++..+...+..+..++. ++.--....+.+..+
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p-~~~~il~~L~~il~~v~kNPs--nP~FnHylFEsi~~l 99 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILP-IAVEILQHLTAILKEVSKNPS--NPRFNHYLFESIGAL 99 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHHHHHHTS-----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhCCC--CcchhhhHHHHHHHH
Confidence 34678888888887532 333344444444333332221 123333444444444444553 233323333333333
Q ss_pred HHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcc-hhhHHhhHHHHHHHH
Q 046316 188 TAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFP-SLAESEFLVVVRSLW 266 (966)
Q Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~-~~~~~~~~~~~~~~~ 266 (966)
+.. ..+. -++.+...-+..++.|..+|+.+.. .+--.++.+|..+.+..+ ..+.+....+++++
T Consensus 100 ir~---~~~~----~~~~v~~~E~~L~P~f~~ILq~dV~-------EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~L- 164 (435)
T PF03378_consen 100 IRF---VCEA----DPEAVSQFEEALFPPFQEILQQDVQ-------EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPL- 164 (435)
T ss_dssp HHH---S-GG----GHH---HHHHHHHHHHHHHHHTT-T-------TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHH-
T ss_pred HHh---ccCC----ChhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH-
Confidence 332 2222 2233334455667788888987431 356788999999998888 33333322222211
Q ss_pred HHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHH
Q 046316 267 QTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQ 346 (966)
Q Consensus 267 ~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed 346 (966)
+. ..-|+..| .+..++ .++.+.+++.+..-.-.+++..++...=.++.-...
T Consensus 165 --------------l~------p~lWe~~g---niPalv----rLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~- 216 (435)
T PF03378_consen 165 --------------LS------PALWERRG---NIPALV----RLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN- 216 (435)
T ss_dssp --------------TS------GGGGGSTT---THHHHH----HHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC-
T ss_pred --------------cC------cchhccCC---CcCcHH----HHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc-
Confidence 00 01244333 223443 444443322211101123333333322122221111
Q ss_pred HHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhh----HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046316 347 IHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREG----IDAIIDAASKRFNESQQEKAAGSTVWWRMREATLF 422 (966)
Q Consensus 347 ~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~----~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~ 422 (966)
...|.++|..+..+++.+. ++.++..+-++++.+. ..|.+-..+.
T Consensus 217 ----------------------D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~sk---------T~kf~~~fv~ 265 (435)
T PF03378_consen 217 ----------------------DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSK---------TEKFVKRFVV 265 (435)
T ss_dssp ----------------------HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC-----------HHHHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCC---------cHHHHHHHHH
Confidence 1246789999999988653 4556666666666431 2333333333
Q ss_pred HHHhhHH-----HHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC------hhHHHHHHH
Q 046316 423 ALAFLSE-----QLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS------DGVLEHFLS 491 (966)
Q Consensus 423 alg~l~~-----~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~------~~~~~~~l~ 491 (966)
.++.++. .+.+..+ +..+==+..++.++++|.++ .-..+.=|-.|+.-+.+.....+ .+.....++
T Consensus 266 F~~~~~~~~g~~~li~~id-~IQ~glF~~il~~v~lp~~~--k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~ 342 (435)
T PF03378_consen 266 FLSLFAIKYGPDFLIQTID-SIQPGLFGMILEKVWLPDLQ--KVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLE 342 (435)
T ss_dssp HHHHHHHHH-HHHHHHHHH-TTSTTHHHHHHHHTHHHHGG--G--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHH-HhcCCcHHHHHHHHhcCchh--hcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHH
Confidence 3333321 1211111 11110156778888888877 12335555556666777653221 134555666
Q ss_pred HHHhhhc
Q 046316 492 AAITTIA 498 (966)
Q Consensus 492 ~~~~~L~ 498 (966)
++++.+.
T Consensus 343 ~Ll~ll~ 349 (435)
T PF03378_consen 343 ALLKLLE 349 (435)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6666654
No 106
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=90.03 E-value=4.2 Score=43.10 Aligned_cols=202 Identities=12% Similarity=0.119 Sum_probs=115.8
Q ss_pred HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC-CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhh
Q 046316 488 HFLSAAITTIAMDVPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTA 566 (966)
Q Consensus 488 ~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~ 566 (966)
+-|+.++..|....++.++..|..++.+..... .++.+... ..+..+.++++.........++.++...-.......
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~--Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDL--GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHc--CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 456777777776667889999999998865442 22222221 235667777887777777777777764422111111
Q ss_pred cccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhc
Q 046316 567 SMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKS 646 (966)
Q Consensus 567 ~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~ 646 (966)
... ..++.+.+.-....-|..+...++.+|..++ ....+..+....+|-+...+..... ..-..++-+|..|.++
T Consensus 90 ~Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt-v~~~~~~~l~~~i~~ll~LL~~G~~---~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 90 QIK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLT-VTNDYHHMLANYIPDLLSLLSSGSE---KTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccC-CCcchhhhHHhhHHHHHHHHHcCCh---HHHHHHHHHHHHhccC
Confidence 111 1123233221222334445545555555553 3456666677788888888875422 2334566666666654
Q ss_pred CChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHH---HhcCccceeee
Q 046316 647 ASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATF---ISGGRQLMLVW 697 (966)
Q Consensus 647 ~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~---i~~~~~~~~~~ 697 (966)
|.-....+-.++.+.++.++..++..+++..+...+.++ ++++...+.+|
T Consensus 165 -p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~ 217 (254)
T PF04826_consen 165 -PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQD 217 (254)
T ss_pred -HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccc
Confidence 212223233456677788777777888888888887776 44444445544
No 107
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.75 E-value=67 Score=40.64 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=97.2
Q ss_pred chhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHh-cCCccccHH
Q 046316 367 SCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEV-SGLTSVRLG 445 (966)
Q Consensus 367 s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~-~~~~~~~~~ 445 (966)
+.-..-+.||.+++...++-..+.+..++. ++ +......|-|.+-++|.+-.......+ .+... ++.
T Consensus 290 ~g~k~v~~fL~elS~~~P~l~~~~l~~lv~-ll----------d~es~~lRnavlei~~n~V~~~l~d~e~~~~sk-~~r 357 (1251)
T KOG0414|consen 290 AGPKIVGNFLVELSERVPKLMLRQLTLLVD-LL----------DSESYTLRNAVLEICANLVASELRDEELEEMSK-SLR 357 (1251)
T ss_pred cchhhHHHHHHHHHHHhHHHHHHHHHHHHH-hc----------CCchHHHHHHHHHHHHHHHHHHhcchhhhHHHH-HHH
Confidence 344456778888888877554443333332 22 233578898888888876543322111 00000 122
Q ss_pred H-HHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhh--cChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCC
Q 046316 446 E-LLEQMITEDIGTGVHQYPFLYARIFASVARFSSA--ISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANK 522 (966)
Q Consensus 446 ~-~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~--~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~ 522 (966)
. ++. ++...+. +-++++|.|++.+..+.+.. .+......++..++..|. |.+..||-.|+.-+..|+...|-
T Consensus 358 ~~~le-~l~erl~---Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~-DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 358 DELLE-LLRERLL---DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLE-DKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHH-HHHHHhh---cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccc-cccHHHHHHHHHHHHHHHhcCCc
Confidence 2 232 2323333 78899999999999998775 455778889999999986 56889999999999999876421
Q ss_pred -CCcc-ccHHHHHHHHHHHHhh
Q 046316 523 -GNFQ-PQMMGLFSSLADLLHQ 542 (966)
Q Consensus 523 -~~l~-p~l~~il~~L~~ll~~ 542 (966)
.... .-+...++.-.+.+++
T Consensus 433 s~~~~~~~~~~~~E~~~~~~e~ 454 (1251)
T KOG0414|consen 433 SSELRSDDLRAKLEKELQKLEE 454 (1251)
T ss_pred hhhhcchhhhhhHHHHHHhhhh
Confidence 1110 1122335565666654
No 108
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.67 E-value=47 Score=38.77 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhc
Q 046316 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVS 167 (966)
Q Consensus 88 ~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~ 167 (966)
.+.-+|+..+.+++..|.+- .-|+|+|.|-..-.|..+....|.|.++..+|+.-+....+..+ .-++..+-..+.
T Consensus 293 ~deYVRnvt~ra~~vva~al---gv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl-~~l~~ci~~~l~ 368 (975)
T COG5181 293 KDEYVRNVTGRAVGVVADAL---GVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHL-GPLLKCISKLLK 368 (975)
T ss_pred ccHHHHHHHHHHHHHHHHhh---CcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhh-hhHHHHHHHHhh
Confidence 46789999999999998765 46789999988888766778899999999999987665444433 224444444554
Q ss_pred C
Q 046316 168 F 168 (966)
Q Consensus 168 ~ 168 (966)
+
T Consensus 369 D 369 (975)
T COG5181 369 D 369 (975)
T ss_pred c
Confidence 3
No 109
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=89.66 E-value=4.7 Score=43.63 Aligned_cols=162 Identities=18% Similarity=0.193 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhccCC---CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccc---h--hhhhhhHHHHHHHH
Q 046316 94 TAISMAVASIAAYDWP---EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAI---V--PKLVPVLFPVLHTI 165 (966)
Q Consensus 94 ~~~a~~Is~Ia~~D~P---~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~---~--~~i~~~l~p~L~~i 165 (966)
..++.++. ...+.| +.||-++|.++.++.+. ++.....|+.+|..+.+...... + .++...+.+.+...
T Consensus 98 ~~l~w~v~--~~~~~~~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~ 174 (282)
T PF10521_consen 98 HVLSWIVL--SQLDRPWISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPC 174 (282)
T ss_pred HHHHHHHH--hcCCcchHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHH
Confidence 45666666 233444 58999999999999885 77888999999999999876654 4 34556666666665
Q ss_pred hcC-----CCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHH
Q 046316 166 VSF-----PESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVL 240 (966)
Q Consensus 166 ~~~-----~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~ 240 (966)
+.. +...+..+-..+..++..+..... ..........+.+.+. +.+.+-+.. ..+.+...+....+
T Consensus 175 L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~---~~~~~~r~~~l~~~l~---e~IL~~~~~---~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 175 LYYLPPITPEDESLELLQAAYPALLSLLKTQE---NDDSNPRSTWLDKILR---EGILSSMEH---ESSFSYPRLRTVLL 245 (282)
T ss_pred hhcCCCCCCchhhHHHHHHHHHHHHHHHHhhc---cCCcccchHHHHHHHH---HHHhhhcee---ccccCchhHHHHHH
Confidence 542 111223332223222222222111 1111111121222111 111111111 11112346777888
Q ss_pred HHHHHHHHhcchhhHHhhHHHHHHHHH
Q 046316 241 KCLNQFIQNFPSLAESEFLVVVRSLWQ 267 (966)
Q Consensus 241 ~~L~~l~~~f~~~~~~~~~~~~~~~~~ 267 (966)
+.+..++...+-....|++.++..+.+
T Consensus 246 ~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 246 QQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 888888888887777888777664443
No 110
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.58 E-value=78 Score=41.18 Aligned_cols=136 Identities=17% Similarity=0.203 Sum_probs=86.2
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHhccCCC--CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhh
Q 046316 80 LLLSSLDDTHRKICTAISMAVASIAAYDWPE--DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPV 157 (966)
Q Consensus 80 ~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~--~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~ 157 (966)
.++.+|+++..++|+-+--|++.|+..| |. .=|+....+-+.+.++ ....+.+|+..+..++-.. ++
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~D-p~vL~~~dvq~~Vh~R~~Ds-sasVREAaldLvGrfvl~~---------~e 888 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEAD-PSVLSRPDVQEAVHGRLNDS-SASVREAALDLVGRFVLSI---------PE 888 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcC-hHhhcCHHHHHHHHHhhccc-hhHHHHHHHHHHhhhhhcc---------HH
Confidence 3555667888999999999999999998 54 4577777777777763 6667888888887665321 22
Q ss_pred HHHHHHH-HhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHH
Q 046316 158 LFPVLHT-IVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVK 236 (966)
Q Consensus 158 l~p~L~~-i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk 236 (966)
+.+..|. |.......+..+|++++||.+.+..- . |-|+...+...++|.+- +| ++-.++
T Consensus 889 ~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e-----------~-----pdf~~i~~~cakmlrRv---~D-EEg~I~ 948 (1692)
T KOG1020|consen 889 LIFQYYDQIIERILDTGVSVRKRVIKILRDICEE-----------T-----PDFSKIVDMCAKMLRRV---ND-EEGNIK 948 (1692)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh-----------C-----CChhhHHHHHHHHHHHh---cc-chhHHH
Confidence 2233332 22222335678999999988864431 1 22334445555566541 22 223478
Q ss_pred HHHHHHHHHH
Q 046316 237 MEVLKCLNQF 246 (966)
Q Consensus 237 ~~~~~~L~~l 246 (966)
+-+++++.++
T Consensus 949 kLv~etf~kl 958 (1692)
T KOG1020|consen 949 KLVRETFLKL 958 (1692)
T ss_pred HHHHHHHHHH
Confidence 8888877665
No 111
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.50 E-value=9.4 Score=43.82 Aligned_cols=106 Identities=10% Similarity=0.142 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhcChhHH--HHHHHhHHHHHHHHH-HhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHH
Q 046316 303 SFVIQLFEFLLTIVGSAKLV--KVIASNVRELVYHTI-AFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEV 379 (966)
Q Consensus 303 ~l~~~~~efl~~~~~~~~~~--~~l~~~l~~li~~li-~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L 379 (966)
+++..++....++.++|... +.+..-++.++++++ +.|+... +.|..|.+|+-|+.|+..+
T Consensus 262 ~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p----------------~~dnhwaLRDfAA~ll~~i 325 (576)
T KOG2549|consen 262 ELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRP----------------ELDNHWALRDFAARLLAQI 325 (576)
T ss_pred HHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCc----------------cccchHHHHHHHHHHHHHH
Confidence 56777888888888887653 222333555666666 6777654 3455789999999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHH
Q 046316 380 VSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSE 429 (966)
Q Consensus 380 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~ 429 (966)
++.|+... ..+...|.+.+...-. ++...|-.+.+++..+..+..
T Consensus 326 ~k~f~~~y-~~L~~Rit~tl~k~l~----D~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 326 CKNFSTLY-NNLQPRITRTLSKALL----DNKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred HHhhhhHH-HHHHHHHHHHHHHHhc----CCCCCchhhhhHHHHHHHhhh
Confidence 99998653 3355555555544321 233467778888777766654
No 112
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.46 E-value=0.7 Score=31.19 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.6
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHhc
Q 046316 79 KLLLSSLDDTHRKICTAISMAVASIAAY 106 (966)
Q Consensus 79 ~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~ 106 (966)
..+++++.|++..||.+++.+++.|+++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 4567778888888999998888888764
No 113
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.44 E-value=49 Score=40.42 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=69.1
Q ss_pred HHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH
Q 046316 450 QMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM 529 (966)
Q Consensus 450 ~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l 529 (966)
+.+..+++ +++|++|+-|+-+++.... ++....++..+.+++. +.+.-||-.|+-|+..+.+..+ + +-+-.
T Consensus 95 Nti~kDl~---d~N~~iR~~AlR~ls~l~~---~el~~~~~~~ik~~l~-d~~ayVRk~Aalav~kly~ld~-~-l~~~~ 165 (757)
T COG5096 95 NTIQKDLQ---DPNEEIRGFALRTLSLLRV---KELLGNIIDPIKKLLT-DPHAYVRKTAALAVAKLYRLDK-D-LYHEL 165 (757)
T ss_pred HHHHhhcc---CCCHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHcc-CCcHHHHHHHHHHHHHHHhcCH-h-hhhcc
Confidence 34445676 8999999999999887642 4778889999989987 4477899999999999886531 1 22211
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHh
Q 046316 530 MGLFSSLADLLHQARDETLHLVLETLQAAIK 560 (966)
Q Consensus 530 ~~il~~L~~ll~~~~~d~l~~~le~l~~~i~ 560 (966)
+....+..++.+.+-.....++-++..+..
T Consensus 166 -g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 166 -GLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred -cHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 123445555566666666666666655544
No 114
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=88.50 E-value=45 Score=36.97 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHhccCC-----------CCccchHHHHHHHhcccCchhhHhHHHH
Q 046316 73 EKEVIRKLLLSSL----DDTHRKICTAISMAVASIAAYDWP-----------EDWPDLLPFLLKLITDQSNMNGVHGGLR 137 (966)
Q Consensus 73 ~K~~IR~~Ll~~L----~~~~~kIr~~~a~~Is~Ia~~D~P-----------~~WP~Ll~~L~~~l~s~~~~~~~~~aL~ 137 (966)
..+.++..++..| ..-+-..|+.++.+.+.+.++... .+||+++..|+..-.++ +.....| .
T Consensus 69 a~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~-dial~~g--~ 145 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP-DIALNCG--D 145 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST-TTHHHHH--H
T ss_pred HHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc-cccchHH--H
Confidence 3445555555443 334555777788888777765422 36789999988887654 3222222 3
Q ss_pred HHHHHHhhccccchhh--hhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHH
Q 046316 138 CLALLSADLDDAIVPK--LVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMN 215 (966)
Q Consensus 138 ~L~~l~~~l~~~~~~~--i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~ 215 (966)
+|.+.++. +.+.. +-...|-.+++..+.+ +-++.+-|...|+.++. .|+.-+.+++...+..++.
T Consensus 146 mlRec~k~---e~l~~~iL~~~~f~~ff~~~~~~---~Fdiasdaf~t~~~llt-------~hk~~~a~fl~~n~d~ff~ 212 (335)
T PF08569_consen 146 MLRECIKH---ESLAKIILYSECFWKFFKYVQLP---NFDIASDAFSTFKELLT-------RHKKLVAEFLSNNYDRFFQ 212 (335)
T ss_dssp HHHHHTTS---HHHHHHHHTSGGGGGHHHHTTSS---SHHHHHHHHHHHHHHHH-------SSHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHhh---HHHHHHHhCcHHHHHHHHHhcCC---ccHhHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHH
Confidence 34444442 11100 0122233344544433 45666666666665443 3666678899999999999
Q ss_pred HHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcch--hhHHhh
Q 046316 216 HFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPS--LAESEF 258 (966)
Q Consensus 216 ~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~--~~~~~~ 258 (966)
.+..+|+. +.+-.|.+.+|.|+.+...-.. .+..|+
T Consensus 213 ~~~~Ll~s-------~NYvtkrqslkLL~ellldr~n~~vm~~yi 250 (335)
T PF08569_consen 213 KYNKLLES-------SNYVTKRQSLKLLGELLLDRSNFNVMTRYI 250 (335)
T ss_dssp HHHHHCT--------SSHHHHHHHHHHHHHHHHSGGGHHHHHHHT
T ss_pred HHHHHccC-------CCeEeehhhHHHHHHHHHchhHHHHHHHHH
Confidence 99999876 4688999999999999866553 455554
No 115
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.45 E-value=45 Score=39.94 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=58.1
Q ss_pred HHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH
Q 046316 450 QMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM 529 (966)
Q Consensus 450 ~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l 529 (966)
+.+-.+++ +++.|+||-.+-++.+.. .+|++.++++.+..+|... +.-||--|.-|+..+... .+.+-|-.
T Consensus 102 na~RkDLQ---HPNEyiRG~TLRFLckLk---E~ELlepl~p~IracleHr-hsYVRrNAilaifsIyk~--~~~L~pDa 172 (948)
T KOG1058|consen 102 NAYRKDLQ---HPNEYIRGSTLRFLCKLK---EPELLEPLMPSIRACLEHR-HSYVRRNAILAIFSIYKN--FEHLIPDA 172 (948)
T ss_pred HHHhhhcc---CchHhhcchhhhhhhhcC---cHHHhhhhHHHHHHHHhCc-chhhhhhhheeehhHHhh--hhhhcCCh
Confidence 33445565 899999999998887763 4588999999999998744 567899999888877654 24566777
Q ss_pred HHHHHHH
Q 046316 530 MGLFSSL 536 (966)
Q Consensus 530 ~~il~~L 536 (966)
|.++...
T Consensus 173 peLi~~f 179 (948)
T KOG1058|consen 173 PELIESF 179 (948)
T ss_pred HHHHHHH
Confidence 7665554
No 116
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=88.05 E-value=2.7 Score=36.14 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=61.1
Q ss_pred HHHHHh-hhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhH
Q 046316 80 LLLSSL-DDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVL 158 (966)
Q Consensus 80 ~Ll~~L-~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l 158 (966)
.|++.| .+++..+|..++.+++.+.. |+.++.|.+.+++ .++.....|...|..+- .++.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~-----------~~~~ 63 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELGD-------PEAIPALIELLKD-EDPMVRRAAARALGRIG-----------DPEA 63 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTS-SSHHHHHHHHHHHHCCH-----------HHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcC-CCHHHHHHHHHHHHHhC-----------CHHH
Confidence 467777 78899999999999984432 3789999999987 48888999999887652 2567
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHH
Q 046316 159 FPVLHTIVSFPESYDRYVRTKALS 182 (966)
Q Consensus 159 ~p~L~~i~~~~~~~~~~~r~~al~ 182 (966)
++.|.+.+.+.. +..+|..|++
T Consensus 64 ~~~L~~~l~~~~--~~~vr~~a~~ 85 (88)
T PF13646_consen 64 IPALIKLLQDDD--DEVVREAAAE 85 (88)
T ss_dssp HHHHHHHHTC-S--SHHHHHHHHH
T ss_pred HHHHHHHHcCCC--cHHHHHHHHh
Confidence 788888887653 3456665544
No 117
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.97 E-value=36 Score=39.85 Aligned_cols=252 Identities=15% Similarity=0.142 Sum_probs=132.5
Q ss_pred CcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhcch-hhcccccchHHHHHHH
Q 046316 503 PPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA-RDETLHLVLETLQAAIKAGFL-TASMEPMISPLILNIW 580 (966)
Q Consensus 503 ~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~-~~d~l~~~le~l~~~i~~~~~-~~~~~~~l~p~~l~l~ 580 (966)
...|+.|+..+...+..-+ + ..++.|-...-.++... ..|....+++-+...++.+.. .. ..--..++..
T Consensus 4 l~~R~~a~~~l~~~i~~~~---~-~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~----~~R~~fF~~I 75 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYP---L-SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG----LMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHHhCC---c-hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH----HHHHHHHHHH
Confidence 3445555555555544321 1 34444545555555433 346777777777777765321 11 0001122222
Q ss_pred HhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCC------------------------CCCchhhHHH
Q 046316 581 ALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQ------------------------QQPDGLVAGS 636 (966)
Q Consensus 581 ~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~------------------------~~~~~~~~~a 636 (966)
..+..++. ...-++.|.+|.+.+-....+...+.|.+..-+..-. ..........
T Consensus 76 ~~~~~~~d-~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 76 SDPSNDDD-FDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred hcCCCchh-HHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 33333332 2334567777775544333444555555443332100 0012345677
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhc
Q 046316 637 LDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLL 716 (966)
Q Consensus 637 l~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL 716 (966)
++++..++|.-...+.+..+..+...++.+-.++...+.+..+..+|+..|.+|. +. .+.+..++.++.+..
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~--iP------~~sl~~~i~vLCsi~ 226 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD--IP------SESLSPCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc--CC------hHHHHHHHHHHhhHh
Confidence 8899999987655444444555667777776667777778999999999999864 21 356778888877664
Q ss_pred CCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHhh
Q 046316 717 NPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQS-----AQIAGLRSSLLLIFARLVHM 780 (966)
Q Consensus 717 ~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~-----~~~~~~~~~li~vfa~l~~~ 780 (966)
+-. +-+-.+-+++..|+ +.+.+ ...+..+..-|.+ .+......+.+.++-.++..
T Consensus 227 ~~~---~l~~~~w~~m~nL~---~S~~g---~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~ 286 (464)
T PF11864_consen 227 NSV---SLCKPSWRTMRNLL---KSHLG---HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG 286 (464)
T ss_pred ccc---ccchhHHHHHHHHH---cCccH---HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhc
Confidence 322 11112333343333 22222 2334444444421 22355666777777777665
No 118
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.12 E-value=82 Score=38.46 Aligned_cols=92 Identities=20% Similarity=0.114 Sum_probs=62.8
Q ss_pred hhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCC----------CCCC---cCcHHHHHH
Q 046316 743 MAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIP----------SEGY---GNSFVYVMS 809 (966)
Q Consensus 743 l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~----------~~~~---~~~L~~vl~ 809 (966)
++.+...++-.++....++-.+.++-.++.++.|+++.. +++...++|..-. .... -.+| .|..
T Consensus 549 ~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s--~seli~slLk~~~vSS~lAG~lsskD~~vlVgAL-QvAE 625 (1051)
T KOG0168|consen 549 LQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFS--NSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGAL-QVAE 625 (1051)
T ss_pred HHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhC--CHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehH-HHHH
Confidence 466777777777777777777888888999999998885 6676666774211 0000 0122 4566
Q ss_pred HHhcccccccccchhHHHHHHHHHHHcc
Q 046316 810 EWTKLQGEIQGAYPIKVTTTALALLLST 837 (966)
Q Consensus 810 ~W~~~~~~~~g~~~~K~~~laL~~Ll~~ 837 (966)
..+++++...+.+=+|..++-..+=|..
T Consensus 626 iLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 626 ILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 7778888777777777777777776655
No 119
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.94 E-value=3.9 Score=35.81 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=59.3
Q ss_pred HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhc
Q 046316 488 HFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTAS 567 (966)
Q Consensus 488 ~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~ 567 (966)
..|+.++..+. |+.+|||..|..-|+.++.... .....++.++..++..+.+.+.=+--.++..+.......+
T Consensus 3 ~~~~~al~~L~-dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p---- 75 (92)
T PF10363_consen 3 ETLQEALSDLN-DPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP---- 75 (92)
T ss_pred HHHHHHHHHcc-CCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh----
Confidence 35667777776 5579999999999999998743 2444567778888887777766555566666666665543
Q ss_pred ccccchHHHHHHHH
Q 046316 568 MEPMISPLILNIWA 581 (966)
Q Consensus 568 ~~~~l~p~~l~l~~ 581 (966)
..+.|.+++.|.
T Consensus 76 --~~vl~~L~~~y~ 87 (92)
T PF10363_consen 76 --DEVLPILLDEYA 87 (92)
T ss_pred --HHHHHHHHHHHh
Confidence 245577776654
No 120
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=86.59 E-value=40 Score=38.14 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=64.9
Q ss_pred HHHHhhhchHHHHHHHHHHHH-HHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHH
Q 046316 81 LLSSLDDTHRKICTAISMAVA-SIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLF 159 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is-~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~ 159 (966)
+|++-.+++.++-+.++.+.. ..+.++ |.. -+..+..+|.+. |......+++++.++|++++.|.+..+++.+.
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~-P~~---~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHL-PLQ---CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhC-chh---HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 444445566666666666554 445555 643 233444455443 55666778889999999999988999999999
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHH
Q 046316 160 PVLHTIVSFPESYDRYVRTKALS 182 (966)
Q Consensus 160 p~L~~i~~~~~~~~~~~r~~al~ 182 (966)
|.+.+-+.+.. ..+|+.|+=
T Consensus 451 P~~iqay~S~S---S~VRKtaVf 470 (516)
T KOG2956|consen 451 PCVIQAYDSTS---STVRKTAVF 470 (516)
T ss_pred hHHHHHhcCch---HHhhhhHHH
Confidence 99999998763 578876654
No 121
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.49 E-value=85 Score=38.00 Aligned_cols=227 Identities=14% Similarity=0.198 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHHHHHhcchhhH---HhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHH
Q 046316 233 WGVKMEVLKCLNQFIQNFPSLAE---SEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLF 309 (966)
Q Consensus 233 ~~lk~~~~~~L~~l~~~f~~~~~---~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~ 309 (966)
..+|-.++++|++++..+|.... ..+..+++..-......+.+ ..- ..|...++++++.++-
T Consensus 296 ~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AIT----tLL-----------KTG~e~sv~rLm~qI~ 360 (865)
T KOG1078|consen 296 VALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAIT----TLL-----------KTGTESSVDRLMKQIS 360 (865)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHH----HHH-----------HhcchhHHHHHHHHHH
Confidence 46889999999999999997543 33322222111111111110 000 0133345688888888
Q ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHhhc-CCHHHHHHHhhCHHHHhh---cccCCccchhhHHHHHHHHHHHHhCh
Q 046316 310 EFLLTIVGSAKLVKVIASNVRELVYHTIAFLQ-MTEQQIHIWSIDANQFLA---DEDESTYSCRVSGALLLEEVVSYCGR 385 (966)
Q Consensus 310 efl~~~~~~~~~~~~l~~~l~~li~~li~~~~-lt~ed~e~w~~Dp~~fv~---de~d~~~s~R~aa~~lL~~L~~~~~~ 385 (966)
.|++.+-...+. . .+..+...+. ++... ... ..|+. .+ +.+|.-..+..+.+..+.+..++
T Consensus 361 ~fv~disDeFKi--v-------vvdai~sLc~~fp~k~-~~~----m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie~~pd 425 (865)
T KOG1078|consen 361 SFVSDISDEFKI--V-------VVDAIRSLCLKFPRKH-TVM----MNFLSNMLRE-EGGFEFKRAIVDAIIDIIEENPD 425 (865)
T ss_pred HHHHhccccceE--E-------eHHHHHHHHhhccHHH-HHH----HHHHHHHHHh-ccCchHHHHHHHHHHHHHHhCcc
Confidence 888876432211 0 1111111111 11110 000 01221 12 34466677788888877775543
Q ss_pred h---hHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCC
Q 046316 386 E---GIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQ 462 (966)
Q Consensus 386 ~---~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 462 (966)
. .+..++.+|... ..++-+...++-++.. +... ..|-.... +|.+.+- -+
T Consensus 426 sKe~~L~~LCefIEDc----------------e~~~i~~rILhlLG~E---gP~a-~~Pskyir----~iyNRvi---LE 478 (865)
T KOG1078|consen 426 SKERGLEHLCEFIEDC----------------EFTQIAVRILHLLGKE---GPKA-PNPSKYIR----FIYNRVI---LE 478 (865)
T ss_pred hhhHHHHHHHHHHHhc----------------cchHHHHHHHHHHhcc---CCCC-CCcchhhH----HHhhhhh---hh
Confidence 2 244444444321 1233344455544322 1110 01211222 2222222 47
Q ss_pred ChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcc
Q 046316 463 YPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLP 518 (966)
Q Consensus 463 ~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~ 518 (966)
+..+|+.|..++.+|. ...+.....+...+..|+. |.+.-||-.|.-++...-+
T Consensus 479 n~ivRaaAv~alaKfg-~~~~~l~~sI~vllkRc~~-D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFG-AQDVVLLPSILVLLKRCLN-DSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhHHHHHHHHHHHh-cCCCCccccHHHHHHHHhc-CchHHHHHHHHHHHHHhhh
Confidence 7899999999999998 2233344556666666765 5577899999888887664
No 122
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=85.60 E-value=10 Score=40.98 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=86.5
Q ss_pred HHHHHHhhhh-cChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCC---ccc-cHHH-HHHHHHHHHh---
Q 046316 471 FASVARFSSA-ISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGN---FQP-QMMG-LFSSLADLLH--- 541 (966)
Q Consensus 471 ~~~l~~f~~~-~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~---l~p-~l~~-il~~L~~ll~--- 541 (966)
+|++.+-.+. .-.+...-+++.+++.+. |.+..+|..+|.++..|+...+... ++. .+.+ +.+.+..++.
T Consensus 101 ~w~v~~~~~~~~i~~~~~liiP~iL~llD-D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP 179 (282)
T PF10521_consen 101 SWIVLSQLDRPWISQHWPLIIPPILNLLD-DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLP 179 (282)
T ss_pred HHHHHhcCCcchHHHhhhHHHhhHHHHhc-CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCC
Confidence 4777722211 112455667777777765 5588999999999999998754433 332 2222 3344444443
Q ss_pred -----hcChhhHHHHHHHHHHHHhhc---c---hhhcccccchHHHHHHHHhhcC--ChhHHHHHHHHHHHHHc-CCCcH
Q 046316 542 -----QARDETLHLVLETLQAAIKAG---F---LTASMEPMISPLILNIWALHVS--DPFISIDAIEVLEAIKC-SPGCI 607 (966)
Q Consensus 542 -----~~~~d~l~~~le~l~~~i~~~---~---~~~~~~~~l~p~~l~l~~~~~~--d~~~~~~~~~~l~~l~~-~~~~~ 607 (966)
+.+-..+..+..++...+... . ....+...+...+++-+....+ .+-++....+-+..+.+ .+...
T Consensus 180 ~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~ 259 (282)
T PF10521_consen 180 PITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISS 259 (282)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHH
Confidence 112235566667777665531 1 2222222233323333222222 35566555555555553 34566
Q ss_pred HHHHHhhhcchHhhhcCCC
Q 046316 608 HQLASRILPYVGPILNNPQ 626 (966)
Q Consensus 608 ~~l~~~~lP~l~~~l~~~~ 626 (966)
..+.++++|++..++.++.
T Consensus 260 ~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 260 VKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 7788999999999988763
No 123
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=85.12 E-value=29 Score=38.76 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHhhcC---ChhHHHHHHHHHhHHHHHHHhccC-chHHhhhhHHHHHHHHhcCc
Q 046316 631 GLVAGSLDLLTMLLKSA---STDVVKAAYDVCFDAVIRIILQSE-DHSEMQNATECLATFISGGR 691 (966)
Q Consensus 631 ~~~~~al~ll~~l~~~~---~~~l~~~~~~~~fp~l~~~l~~s~-d~~~lq~~~~~l~~~i~~~~ 691 (966)
+-...++-++..+++.. +...-..++..+.|+++++++..+ .+.+...+++.++.++....
T Consensus 226 p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 226 PRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred CcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 45667788888888874 233344456788999999998644 77888889999999988754
No 124
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=84.90 E-value=19 Score=43.87 Aligned_cols=179 Identities=16% Similarity=0.220 Sum_probs=110.9
Q ss_pred EehhHHHHHHhhcccCC-------CCCc-----cccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc--hhhcccc
Q 046316 505 VKVGACRALSELLPKAN-------KGNF-----QPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF--LTASMEP 570 (966)
Q Consensus 505 Vr~~A~~al~~~~~~~~-------~~~l-----~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~--~~~~~~~ 570 (966)
+--.|+.++.-++.+.+ .... |-+...|+..+.+.+........+..++.+..+++.-| ..-+...
T Consensus 829 ~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~ 908 (1030)
T KOG1967|consen 829 TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFP 908 (1030)
T ss_pred ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchh
Confidence 34457777776665421 1112 22455667777777775666788999999999998655 2222334
Q ss_pred cchHHHHHHHHhhcCChhHHHHHHHHHHHHH-cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCCh
Q 046316 571 MISPLILNIWALHVSDPFISIDAIEVLEAIK-CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAST 649 (966)
Q Consensus 571 ~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~-~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~ 649 (966)
.+.|++++- -..-|+..+..+.+++..+. .++.........++|.+..+=..+....--....||+++..+.+..|.
T Consensus 909 ~LlPLLLq~--Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~ 986 (1030)
T KOG1967|consen 909 MLLPLLLQA--LSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT 986 (1030)
T ss_pred hHHHHHHHh--cCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC
Confidence 566777664 24568888888889988777 557777778899999998775544321123557899999999998874
Q ss_pred hHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHH
Q 046316 650 DVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATF 686 (966)
Q Consensus 650 ~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~ 686 (966)
.---.+-..+..++.+++- ..-+-+...|..+=.++
T Consensus 987 ~~l~~fr~~Vl~al~k~Ld-DkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 987 KSLLSFRPLVLRALIKILD-DKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred cccccccHHHHHHhhhccC-cHHHHHHHHHHHHhhhh
Confidence 3222222333455555542 22244455554443333
No 125
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=84.54 E-value=14 Score=38.95 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=76.0
Q ss_pred HhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHH----HhhcCChhHHHHHHHHHHHHHcCCCcH-HHHHHhh
Q 046316 540 LHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIW----ALHVSDPFISIDAIEVLEAIKCSPGCI-HQLASRI 614 (966)
Q Consensus 540 l~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~----~~~~~d~~~~~~~~~~l~~l~~~~~~~-~~l~~~~ 614 (966)
+.++++.+.-.+|+++..--|. .+++|+.++.+ .++.+|-.....++.+..+|...+..| .++...+
T Consensus 207 ~dEs~~~~r~aAl~sLr~dsGl--------hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hql 278 (450)
T COG5095 207 LDESDEQTRDAALESLRNDSGL--------HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQL 278 (450)
T ss_pred HHHHHHHHHHHHHHHhccCccH--------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHH
Confidence 4566666777788888655444 35778777654 445566666667777888888777654 6889999
Q ss_pred hcchHhhhcC----CCC---CCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHh
Q 046316 615 LPYVGPILNN----PQQ---QPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIIL 668 (966)
Q Consensus 615 lP~l~~~l~~----~~~---~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~ 668 (966)
+|.|..++-. ..+ +++.+...|.+++.+++++.+.. +..+-|.+.+-++
T Consensus 279 mPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~-----YktLkPRvtrTll 334 (450)
T COG5095 279 MPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS-----YKTLKPRVTRTLL 334 (450)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh-----hhhhchHHHHHHH
Confidence 9999888632 111 22456678888888888876532 3334455555544
No 126
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=84.46 E-value=61 Score=34.58 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=85.0
Q ss_pred HHHHhcccCchhhHhHHHHHHHHHHhhccccchh-hhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhcc
Q 046316 119 LLKLITDQSNMNGVHGGLRCLALLSADLDDAIVP-KLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGV 197 (966)
Q Consensus 119 L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~-~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~ 197 (966)
|-..|++ +|...+..|+.+|..+...+..+.+. .-+..++.-...=+.+. ..+. .+++.+.+.+. +...
T Consensus 4 Lg~~Lts-ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~----~~~~-~~l~gl~~L~~----~~~~ 73 (262)
T PF14500_consen 4 LGEYLTS-EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH----ACVQ-PALKGLLALVK----MKNF 73 (262)
T ss_pred hhhhhCC-CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH----hhHH-HHHHHHHHHHh----CcCC
Confidence 4456777 47788889999999999988865442 12233334333333221 1121 22343333332 1111
Q ss_pred chhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHH
Q 046316 198 CKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYT 277 (966)
Q Consensus 198 ~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~ 277 (966)
... .....++.+.+-...+ . -.-+.|..+|+++..++++|...+...-..++..+.
T Consensus 74 ~~~--------~~~~i~~~l~~~~~~q--~---~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i----------- 129 (262)
T PF14500_consen 74 SPE--------SAVKILRSLFQNVDVQ--S---LPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFI----------- 129 (262)
T ss_pred Chh--------hHHHHHHHHHHhCChh--h---hhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHH-----------
Confidence 111 1222223332221111 0 112689999999999999988655333233333221
Q ss_pred HhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHh
Q 046316 278 RSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAF 339 (966)
Q Consensus 278 ~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~ 339 (966)
..+++ |. + .+.+..+|+++..++..-.. .+...++...+..|
T Consensus 130 -~~~~g-------------Ek-D-PRnLl~~F~l~~~i~~~~~~----~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 130 -QLIDG-------------EK-D-PRNLLLSFKLLKVILQEFDI----SEFAEDLFDVFSCY 171 (262)
T ss_pred -HHhcc-------------CC-C-HHHHHHHHHHHHHHHHhccc----chhHHHHHHHhhhe
Confidence 12221 11 1 57888889888877654332 33444444444444
No 127
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=84.28 E-value=32 Score=37.48 Aligned_cols=139 Identities=13% Similarity=0.108 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcC
Q 046316 89 HRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSF 168 (966)
Q Consensus 89 ~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~ 168 (966)
++|-|+-.+.+-..+...|...+|.|+...|-.++.. ++ ..-..-..-+--..+...|-+.++.
T Consensus 2 d~k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~----------lq------~~~~~~~~IP~k~~v~krLaqCL~P 65 (307)
T PF04118_consen 2 DSKYKKYNAEVEKALKSFESSSEWADYISFLGKLLKA----------LQ------NSNNQFPYIPHKLQVSKRLAQCLNP 65 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH----------Hh------ccCCCCceeCcHHHHHHHHHHhcCC
Confidence 3566666777777888889999999987766554321 11 0000000011112334455555543
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 046316 169 PESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQ 248 (966)
Q Consensus 169 ~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~ 248 (966)
. -...+...|+++|..++..++. +.+..-++-|..-+.-++.. ....+|...++++.+.+-
T Consensus 66 ~--LPsGVH~KaLevY~~IF~~ig~----------~~L~~dl~i~~~GLfpl~~~-------asi~Vkp~lL~i~e~~~l 126 (307)
T PF04118_consen 66 A--LPSGVHQKALEVYEYIFERIGP----------DGLAQDLPIYSPGLFPLFSY-------ASIQVKPQLLDIYEKYYL 126 (307)
T ss_pred C--CChHHHHHHHHHHHHHHHhcCH----------HHHHhhcHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHhc
Confidence 2 2456778899999998876532 22445556666655555543 234688887777776665
Q ss_pred hcchhhHHhhHHHH
Q 046316 249 NFPSLAESEFLVVV 262 (966)
Q Consensus 249 ~f~~~~~~~~~~~~ 262 (966)
.-++.+.|.++.++
T Consensus 127 pL~~~L~p~l~~li 140 (307)
T PF04118_consen 127 PLGPALRPCLKGLI 140 (307)
T ss_pred CccHHHHHHHHHHH
Confidence 55555555555443
No 128
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.13 E-value=27 Score=42.38 Aligned_cols=189 Identities=14% Similarity=0.108 Sum_probs=115.3
Q ss_pred HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC-CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhh
Q 046316 488 HFLSAAITTIAMDVPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTA 566 (966)
Q Consensus 488 ~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~ 566 (966)
+-++.++..+. |+..|+|.+|.+-+..+++.. ....+.+ ..+++..+..+.+.+.-+--.++..++..+..
T Consensus 727 e~~qeai~sl~-d~qvpik~~gL~~l~~l~e~r~~~~~~~~--ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev----- 798 (982)
T KOG4653|consen 727 EPLQEAISSLH-DDQVPIKGYGLQMLRHLIEKRKKATLIQG--EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV----- 798 (982)
T ss_pred HHHHHHHHHhc-CCcccchHHHHHHHHHHHHhcchhhhhhH--HHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-----
Confidence 44777777766 447899999999999999853 2223333 45566666666655554444555544344332
Q ss_pred cccccchHHHHHHHHhhcCCh--hHHHHHHHHHHHHHc-CCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHH
Q 046316 567 SMEPMISPLILNIWALHVSDP--FISIDAIEVLEAIKC-SPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTML 643 (966)
Q Consensus 567 ~~~~~l~p~~l~l~~~~~~d~--~~~~~~~~~l~~l~~-~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l 643 (966)
|...+.|.+.+-+.+..+.+ -.+..+-|++-.+.. .++....+.+.++-++.+..+.+ ...+...++..++.+
T Consensus 799 -y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep---d~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 799 -YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP---DHEFRASSLANLGQL 874 (982)
T ss_pred -cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc---hHHHHHhHHHHHHHH
Confidence 11356788887655544433 345555566655553 35555666666677777776644 223455666666666
Q ss_pred hhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhc
Q 046316 644 LKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISG 689 (966)
Q Consensus 644 ~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~ 689 (966)
++........ .+..++..++.+...++...+..+|...+...+..
T Consensus 875 cq~~a~~vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 875 CQLLAFQVSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHhhhhhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 6544322333 45566777777766566667778888888877764
No 129
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=83.05 E-value=82 Score=34.95 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 466 LYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 466 Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
-+.-|..++++|..++| ++....+.+-+.+.. |.+..||..|++-|..||..
T Consensus 40 ~k~lasq~ip~~fk~fp-~la~~a~da~~d~~e-d~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFP-SLADEAIDAQLDLCE-DDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHhhCc-hhhhHHHHhhhcccc-ccchhhHHHHHhccchhccC
Confidence 35557789999999885 566677777777644 66899999999999999976
No 130
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=83.03 E-value=1e+02 Score=36.19 Aligned_cols=108 Identities=13% Similarity=0.188 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhhhcChhHHHHHHHHHHhhhc------C-CCCCcEehhHH----HHHHhhcccCCCCCccccHHHHHHH
Q 046316 467 YARIFASVARFSSAISDGVLEHFLSAAITTIA------M-DVPPPVKVGAC----RALSELLPKANKGNFQPQMMGLFSS 535 (966)
Q Consensus 467 r~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~------~-~~~~~Vr~~A~----~al~~~~~~~~~~~l~p~l~~il~~ 535 (966)
..|-||.+|-.+..+++..-.+++-.+++.|- . ..+..|..+-. .-+.+|+.+ -..++..++..
T Consensus 500 lNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLka-----hw~FLkTVv~K 574 (1053)
T COG5101 500 LNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKA-----HWSFLKTVVKK 574 (1053)
T ss_pred HhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHH-----HHHHHHHHHHH
Confidence 45789999999999887777777777776653 1 11233322211 111222221 23567888999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHhhcc--hhhcccccchHHHHHH
Q 046316 536 LADLLHQARDETLHLVLETLQAAIKAGF--LTASMEPMISPLILNI 579 (966)
Q Consensus 536 L~~ll~~~~~d~l~~~le~l~~~i~~~~--~~~~~~~~l~p~~l~l 579 (966)
|+.++.+..+...-+++++...++..-+ +.++-..+--|++..+
T Consensus 575 LFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~I 620 (1053)
T COG5101 575 LFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYI 620 (1053)
T ss_pred HHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHH
Confidence 9999999999899999999988775544 4444333333444433
No 131
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=82.71 E-value=2e+02 Score=39.28 Aligned_cols=278 Identities=11% Similarity=0.068 Sum_probs=152.4
Q ss_pred chHHHHHHHHHHHHHHHhccCC---CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccch---hhhhhhHHHH
Q 046316 88 THRKICTAISMAVASIAAYDWP---EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIV---PKLVPVLFPV 161 (966)
Q Consensus 88 ~~~kIr~~~a~~Is~Ia~~D~P---~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~---~~i~~~l~p~ 161 (966)
....||..+-.|+.+|...-.. ..|+.+|..+-....+. ++..+.-|..++..|+++.-.... ......++..
T Consensus 1195 ~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~-~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~c 1273 (1780)
T PLN03076 1195 NAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDD-HKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNC 1273 (1780)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHH
Confidence 4568899999999887554322 48999999998877764 778899999999999876321000 1233444455
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhh--c------------------cchhHHHHh--hHhhhHHHHHHHHH
Q 046316 162 LHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMS--G------------------VCKTEMFAL--MMPMLKPWMNHFSI 219 (966)
Q Consensus 162 L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~--~------------------~~~~~~~~~--~~~~l~~w~~~~~~ 219 (966)
+.....+.. ...+--.|+..++.|...+.... . ....+...+ -..+...|+.++..
T Consensus 1274 L~~Fa~q~~--~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~ 1351 (1780)
T PLN03076 1274 LIAFTNSRF--NKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAG 1351 (1780)
T ss_pred HHHHHhCcC--cccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 555554332 22333457777887765542110 0 000000000 11345789999877
Q ss_pred HhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhh-----HHHHHHHHHHHHHhHHHHHHhhccCCCCC---CC--
Q 046316 220 ILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEF-----LVVVRSLWQTFVSSLRVYTRSSIEGTEDP---YA-- 289 (966)
Q Consensus 220 ~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~-----~~~~~~~~~~~~~~~~~y~~~~i~~~~~~---~~-- 289 (966)
+-..- .| +...+|..++..|-+++..|+..|.+.. ..++-++...+. ......... .+
T Consensus 1352 Ls~l~---~D-~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~--------~~~~~~~~~~~~~~~~ 1419 (1780)
T PLN03076 1352 LSELS---FD-PRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVR--------HAIDPSGGDEPEGQGV 1419 (1780)
T ss_pred HHHHh---cC-CcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH--------Hhhccccccccccccc
Confidence 75431 12 3467999999999999999998776542 112222222111 111100000 00
Q ss_pred ---CCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCcc
Q 046316 290 ---GRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTY 366 (966)
Q Consensus 290 ---~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~ 366 (966)
........|. .....++++-+..+.. .+...+.+.|+.++..+..++|=+.+.+..
T Consensus 1420 ~~~~~~~e~~~Wl--~eT~~~AL~~lvdLft--~fFd~L~~~L~~~l~ll~~ci~q~n~~la~----------------- 1478 (1780)
T PLN03076 1420 DGDQGELDQDAWL--YETCTLALQLVVDLFV--KFYPTVNPLLKKVLMLLVSFIKRPHQSLAG----------------- 1478 (1780)
T ss_pred cccccchhhhhHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCchHHHHH-----------------
Confidence 0000111243 2455666666666552 444566677778888777777644333221
Q ss_pred chhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHH
Q 046316 367 SCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNE 401 (966)
Q Consensus 367 s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~ 401 (966)
.-+.|-..|+...+.+|.++....++..+.+.+..
T Consensus 1479 ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1479 IGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 11334445555556666666666677776666644
No 132
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=81.90 E-value=34 Score=39.23 Aligned_cols=133 Identities=12% Similarity=0.131 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC--CCcHHHHHHhhhcchHhhhcCCCCC
Q 046316 552 LETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS--PGCIHQLASRILPYVGPILNNPQQQ 628 (966)
Q Consensus 552 le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~--~~~~~~l~~~~lP~l~~~l~~~~~~ 628 (966)
..++...+..|+ .+ ..++..+++.|- ..++.--...++-++.+... |..+..++..+...+..+++++.
T Consensus 239 ~~~~~~f~~kdp~l~----~~~i~~llk~WP--~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h-- 310 (409)
T PF01603_consen 239 SYCVVQFLEKDPSLA----EPVIKGLLKHWP--KTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPH-- 310 (409)
T ss_dssp HHHHHHHHHH-GGGH----HHHHHHHHHHS---SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSS--
T ss_pred HHHHHHHHHhCchhH----HHHHHHHHHhCC--CCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC--
Confidence 334444455555 22 234566677763 34444333344555555532 56788888888888999988763
Q ss_pred CchhhHHHHHHHHHH--hhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccce
Q 046316 629 PDGLVAGSLDLLTML--LKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLM 694 (966)
Q Consensus 629 ~~~~~~~al~ll~~l--~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~ 694 (966)
....+.|+.+|..= +.-. ......++..+||+|.+...+.|...+.+.+..+++.+...+++-|
T Consensus 311 -~qVAErAl~~w~n~~~~~li-~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf 376 (409)
T PF01603_consen 311 -FQVAERALYFWNNEYFLSLI-SQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLF 376 (409)
T ss_dssp -HHHHHHHHGGGGSHHHHHHH-HCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred -HHHHHHHHHHHCCHHHHHHH-HhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence 34566777665321 1111 1122333344466666655556788888888889988888766543
No 133
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=81.63 E-value=2.9 Score=37.82 Aligned_cols=80 Identities=10% Similarity=0.139 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCC-CCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMD-VPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADL 539 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~-~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~l 539 (966)
......|.|++-.++.+.+ +..+....+...++.+|+.. ....+|..|+++...|+...+.+.+.|.+++++-.++++
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4566789999999999988 44556666777777777632 134789999999999999876788999999888777765
Q ss_pred Hh
Q 046316 540 LH 541 (966)
Q Consensus 540 l~ 541 (966)
.+
T Consensus 105 ~~ 106 (107)
T PF08064_consen 105 WD 106 (107)
T ss_pred cc
Confidence 43
No 134
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=81.07 E-value=51 Score=36.37 Aligned_cols=95 Identities=12% Similarity=0.131 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCCh-------hHHHHHHHHHhH
Q 046316 589 ISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAST-------DVVKAAYDVCFD 661 (966)
Q Consensus 589 ~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~-------~l~~~~~~~~fp 661 (966)
++.....|+..+.+.|.. ....++-.+...+.... .+..+.+|+.+..++++... .+.+.++-.++.
T Consensus 144 L~~i~~~~f~~l~~lp~~---~f~~~idsi~wg~kh~~---~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~ 217 (319)
T PF08767_consen 144 LRAINEHCFPALLQLPPE---QFKLVIDSIVWGFKHTN---REISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQ 217 (319)
T ss_dssp HHHHHHHHTHHHHHS-HH---HHHHHHHHHHHHHTSSS---HHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHcCCHH---HHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 344455566666666432 22344444555555432 35667888888888876532 334444444445
Q ss_pred HHHHHHhccCchHHhhhhHHHHHHHHhc
Q 046316 662 AVIRIILQSEDHSEMQNATECLATFISG 689 (966)
Q Consensus 662 ~l~~~l~~s~d~~~lq~~~~~l~~~i~~ 689 (966)
.++.++..+.....+..-+..|..++..
T Consensus 218 ~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 218 DIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 5555554455555566666777777653
No 135
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=80.97 E-value=12 Score=37.46 Aligned_cols=110 Identities=22% Similarity=0.284 Sum_probs=65.6
Q ss_pred HHhhhcCCCCCcEehhHHHHHHhhcccC------------CCCCccccHHH-------HHHHHHHHHh-hcChhhHHHHH
Q 046316 493 AITTIAMDVPPPVKVGACRALSELLPKA------------NKGNFQPQMMG-------LFSSLADLLH-QARDETLHLVL 552 (966)
Q Consensus 493 ~~~~L~~~~~~~Vr~~A~~al~~~~~~~------------~~~~l~p~l~~-------il~~L~~ll~-~~~~d~l~~~l 552 (966)
++.++..|++..||..|+.++..+++.. ....+.|+-.. +-..|+..+. |...-++..++
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3444455778899999999999988742 12345554322 2233333332 33345788889
Q ss_pred HHHHHHHhhcchh---hcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCC
Q 046316 553 ETLQAAIKAGFLT---ASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSP 604 (966)
Q Consensus 553 e~l~~~i~~~~~~---~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~ 604 (966)
.++...+..-||. ..+...++..+..+ . ..+|+-++..+.-|++.+.+..
T Consensus 124 K~la~Lv~~tPY~rL~~~ll~~~v~~v~~~-l-~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 124 KCLAVLVQATPYHRLPPGLLTEVVTQVRPL-L-RHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHccCChhhcCHhHHHHHHHHHHHH-H-hcCCCcHHHHHHHHHHHHHcCC
Confidence 9998888765521 11112222222222 1 2478889999999999888653
No 136
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=80.58 E-value=30 Score=37.31 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=69.4
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHH-HHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcC-Ch
Q 046316 573 SPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQ-LASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSA-ST 649 (966)
Q Consensus 573 ~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~-l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~-~~ 649 (966)
+|.++++.. ..+.-++..++=.|..+++- ++|-.. +..-++-.+..++.++.. ....+..+-=.|+.+.++. |+
T Consensus 159 VPlfiqlL~--s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~-~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 159 VPLFIQLLS--STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI-HISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred hHHHHHHHc--CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc-hHHHHHHhHHHHHHhhCCCCCC
Confidence 588888842 22333566666566666643 333211 222334444445543321 2345566667788888765 56
Q ss_pred hHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 650 DVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 650 ~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
|-|.. +.+.+|.|.+++. +.|++++..|+=++. |++-|+
T Consensus 236 P~w~~-isqalpiL~KLiy-s~D~evlvDA~WAiS-YlsDg~ 274 (526)
T COG5064 236 PDWSN-ISQALPILAKLIY-SRDPEVLVDACWAIS-YLSDGP 274 (526)
T ss_pred CchHH-HHHHHHHHHHHHh-hcCHHHHHHHHHHHH-HhccCc
Confidence 77886 6788999999886 778999999888775 444444
No 137
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=80.14 E-value=13 Score=37.22 Aligned_cols=142 Identities=20% Similarity=0.209 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhc-c---CCCCccchHHHH-----------HHHhcccCchhhHhHHHHHHHHHHhhc---------
Q 046316 91 KICTAISMAVASIAAY-D---WPEDWPDLLPFL-----------LKLITDQSNMNGVHGGLRCLALLSADL--------- 146 (966)
Q Consensus 91 kIr~~~a~~Is~Ia~~-D---~P~~WP~Ll~~L-----------~~~l~s~~~~~~~~~aL~~L~~l~~~l--------- 146 (966)
|||..+.+|+..|++. | +-..||.|||.- +.++-...++..+.+|+.+|..+.+..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 6899999999999988 3 224798888876 222221135667889999999887642
Q ss_pred -cc---------cchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHH
Q 046316 147 -DD---------AIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNH 216 (966)
Q Consensus 147 -~~---------~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~ 216 (966)
.. ..++.++.++-..|...++.+. +..+....+|++...+.. ..+++ +=.+.++..+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~--~~~~l~q~lK~la~Lv~~----tPY~r-----L~~~ll~~~v~~ 149 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK--SPPVLTQLLKCLAVLVQA----TPYHR-----LPPGLLTEVVTQ 149 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHcc----CChhh-----cCHhHHHHHHHH
Confidence 10 1234555666666777776553 334444555544433321 11111 112344555555
Q ss_pred HHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhc
Q 046316 217 FSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNF 250 (966)
Q Consensus 217 ~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f 250 (966)
+...+... +-.++...+-+++.++...
T Consensus 150 v~~~l~~~-------d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 150 VRPLLRHR-------DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHhcC-------CCcHHHHHHHHHHHHHcCC
Confidence 55555441 1236666666666665544
No 138
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.37 E-value=10 Score=41.83 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=92.5
Q ss_pred HHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhh----cChhhHHHHHHHHHHHHhhcc-h
Q 046316 490 LSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQ----ARDETLHLVLETLQAAIKAGF-L 564 (966)
Q Consensus 490 l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~----~~~d~l~~~le~l~~~i~~~~-~ 564 (966)
+...++.+.. ++..++..|+..+..++...+...-. ....++..+++.+.. .+.+....++.++........ .
T Consensus 107 ~~~fl~ll~~-~D~~i~~~a~~iLt~Ll~~~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R 184 (312)
T PF03224_consen 107 YSPFLKLLDR-NDSFIQLKAAFILTSLLSQGPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR 184 (312)
T ss_dssp HHHHHHH-S--SSHHHHHHHHHHHHHHHTSTTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH
Confidence 3344444442 36778888999999888764322222 113344455544443 233345777888888876654 2
Q ss_pred hhcccccchHHHHHHH-----HhhcCChhHHHHHHHHHHHHHcCCCcHHHH-HHhhhcchHhhhcCCCCCCchhhHHHHH
Q 046316 565 TASMEPMISPLILNIW-----ALHVSDPFISIDAIEVLEAIKCSPGCIHQL-ASRILPYVGPILNNPQQQPDGLVAGSLD 638 (966)
Q Consensus 565 ~~~~~~~l~p~~l~l~-----~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l-~~~~lP~l~~~l~~~~~~~~~~~~~al~ 638 (966)
..-+....++.+.++. .++..+.++...+.=|+=-|+-.+.....+ ...++|.+..++..... .-.+..++.
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~K--EKvvRv~la 262 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIK--EKVVRVSLA 262 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--S--HHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhccc--chHHHHHHH
Confidence 2222345567777774 133344456655555554444223322222 12378888888875432 246678888
Q ss_pred HHHHHhhcCChhHHHHHHHHHhHHHHHHHh
Q 046316 639 LLTMLLKSASTDVVKAAYDVCFDAVIRIIL 668 (966)
Q Consensus 639 ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~ 668 (966)
.+..++...+....+.++..=++++++.+.
T Consensus 263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 889998877755555555444555555555
No 139
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.73 E-value=1.7e+02 Score=36.01 Aligned_cols=341 Identities=12% Similarity=0.176 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHHhChhh--HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccc--cHH
Q 046316 370 VSGALLLEEVVSYCGREG--IDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSV--RLG 445 (966)
Q Consensus 370 ~aa~~lL~~L~~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~--~~~ 445 (966)
..+.++++.++.++++.- +.+.++.+-+-+.. .+.-+-+..-+..+++.+... ..|+ .+.
T Consensus 527 ~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~------------sk~s~q~i~tl~tlC~~C~~~----L~py~d~~~ 590 (982)
T KOG2022|consen 527 STSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHN------------SKESEQAISTLKTLCETCPES----LDPYADQFS 590 (982)
T ss_pred HHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcC------------chHHHHHHHHHHHHHHhhhhh----CchHHHHHH
Confidence 367889999999998753 23333333333321 122233333455565544322 1233 122
Q ss_pred HHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhh----c----CCCCC-------cEehhHH
Q 046316 446 ELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTI----A----MDVPP-------PVKVGAC 510 (966)
Q Consensus 446 ~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L----~----~~~~~-------~Vr~~A~ 510 (966)
.+...++.+ ..-.+.-|-+....+|...+...+|...+++-.+++.+ + ++-+. ..+..+.
T Consensus 591 a~~~e~l~~-----~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~i 665 (982)
T KOG2022|consen 591 AVCYEVLNK-----SNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTI 665 (982)
T ss_pred HHHHHHhcc-----cccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 223333222 23557888999999999888765555555554444443 2 11111 1223344
Q ss_pred HHHHhhcccC--------CCCCccc----cHHHHHHHHHHHHhhcChh--hHHHHHHHHHHHHhhc--c----hhhcccc
Q 046316 511 RALSELLPKA--------NKGNFQP----QMMGLFSSLADLLHQARDE--TLHLVLETLQAAIKAG--F----LTASMEP 570 (966)
Q Consensus 511 ~al~~~~~~~--------~~~~l~p----~l~~il~~L~~ll~~~~~d--~l~~~le~l~~~i~~~--~----~~~~~~~ 570 (966)
.+|..-+... +.....| -+..+++.++.++....+- ....+.|....+++.. + +...+.+
T Consensus 666 S~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~ 745 (982)
T KOG2022|consen 666 SALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLP 745 (982)
T ss_pred HHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHH
Confidence 4554332211 0011112 2344555555555544331 1223444443333221 1 3333445
Q ss_pred cchHHHHHHHHhhcCChhHHHHHHHHHHHHH----cCCCcHHHHHHhhhcchHhh---hcC-CCCCCchhhHHHHHHHHH
Q 046316 571 MISPLILNIWALHVSDPFISIDAIEVLEAIK----CSPGCIHQLASRILPYVGPI---LNN-PQQQPDGLVAGSLDLLTM 642 (966)
Q Consensus 571 ~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~----~~~~~~~~l~~~~lP~l~~~---l~~-~~~~~~~~~~~al~ll~~ 642 (966)
.+++++.. +...|... +.+...++. ..++|......-+.-.+.+. +++ +-....+.+...+.+++.
T Consensus 746 ~l~~Fi~r----~~~~~~a~--tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ 819 (982)
T KOG2022|consen 746 SLCPFIVR----FLTSCLAV--TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQ 819 (982)
T ss_pred HHHHHHHH----hccchHHH--HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH
Confidence 55565554 23333211 111111111 22333333323333333333 232 212234566777778888
Q ss_pred HhhcCCh---hHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCC
Q 046316 643 LLKSAST---DVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPD 719 (966)
Q Consensus 643 l~~~~~~---~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~ 719 (966)
.+|..|. +....+-..+++..+.++ .+.++....+++..+..|+.+...+.+ ..+=+++.
T Consensus 820 ilkk~P~~~~~~~~~~ts~i~~~a~~ll-~~pE~~~i~aa~qF~t~~~~~~~s~~~----------~tv~~~V~------ 882 (982)
T KOG2022|consen 820 ILKKIPKFLEPSMLAFTSLILICAFILL-NSPEPTTIRAASQFLTALATYATSHDL----------VTVTSVVA------ 882 (982)
T ss_pred HHHhCcCccccchHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHhhcccchh----------HHHHHHHH------
Confidence 8888873 222222222344445544 566777888999999999888665322 12222221
Q ss_pred CCCccccchHHHHHHHHHhCChhh----hHhHHHHHHHHHHHHHH
Q 046316 720 LESSGSLFVGSYILQLILHLPSQM----AQHIRDLVAALVRRLQS 760 (966)
Q Consensus 720 ~~~~~~~~vg~Lv~~li~~~~~~l----~~~l~~iL~a~~~rL~~ 760 (966)
..-+.|+-++++.+|+.. -+.+.+||.++.++..+
T Consensus 883 ------~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al~~k~~s 921 (982)
T KOG2022|consen 883 ------EIGPILIYAIMRGVGGEASRSTLDALADILLALNAKFFS 921 (982)
T ss_pred ------hcchHHHHHHHHHhcCcCccchhHHHHHHHHHHHHhhhH
Confidence 022456667777776642 25566777777665443
No 140
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=78.20 E-value=1.7e+02 Score=36.81 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=12.9
Q ss_pred HHHHHHccCCcccccce--eccccccC
Q 046316 830 ALALLLSTRHPELAKIN--VQGHLIKS 854 (966)
Q Consensus 830 aL~~Ll~~~d~~l~~i~--v~g~~i~~ 854 (966)
-|.++++-+..-+.++. |.|.+.++
T Consensus 593 iLLslls~~s~llR~~~~~vf~~~~~~ 619 (784)
T PF04931_consen 593 ILLSLLSQPSALLRKVSEQVFEAFCPH 619 (784)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 34445554433344433 77777653
No 141
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=75.59 E-value=74 Score=39.14 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChh-----hHHHHHHHHHHHH
Q 046316 485 VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDE-----TLHLVLETLQAAI 559 (966)
Q Consensus 485 ~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d-----~l~~~le~l~~~i 559 (966)
.....+-.+++.+.+..+..-|..-.+++...+.. .++.++|..+.+++.+.++-.....+ ..+...|.+....
T Consensus 530 ~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~-~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~ 608 (947)
T COG5657 530 LLENLILLVLSLMASPSSLEEREFLLQLISRIIII-DPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALV 608 (947)
T ss_pred cHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHh-CHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 34455555556655444555666777777777654 34678887777888888877654433 2444445554443
Q ss_pred hhcchhhcccccchHHHHHHHHhh--cCChh-HHHHHHHHHHHHHcCCC-cHHHHHHhhhcchHhhhcCCC
Q 046316 560 KAGFLTASMEPMISPLILNIWALH--VSDPF-ISIDAIEVLEAIKCSPG-CIHQLASRILPYVGPILNNPQ 626 (966)
Q Consensus 560 ~~~~~~~~~~~~l~p~~l~l~~~~--~~d~~-~~~~~~~~l~~l~~~~~-~~~~l~~~~lP~l~~~l~~~~ 626 (966)
.. .. ..++..+..|... ..++. +...+.+....+...+. .-.+....++|.+..++.++.
T Consensus 609 ~~--~~-----~~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q~~ 672 (947)
T COG5657 609 FL--KS-----GMCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQPS 672 (947)
T ss_pred Hh--hh-----cccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhccc
Confidence 32 11 1223333333322 23333 34566665544442211 112233456788888877654
No 142
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=75.55 E-value=5.7 Score=26.70 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=25.8
Q ss_pred hHHHHHHHhcccCchhhHhHHHHHHHHHHhh
Q 046316 115 LLPFLLKLITDQSNMNGVHGGLRCLALLSAD 145 (966)
Q Consensus 115 Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~ 145 (966)
|+|.++++++++ ++..+..|..+|..+++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 689999999985 889999999999998864
No 143
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=75.32 E-value=62 Score=29.20 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=64.9
Q ss_pred HHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhcc
Q 046316 203 FALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIE 282 (966)
Q Consensus 203 ~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~ 282 (966)
.+|+.+++-..++.|...+....+ .....-|+.+++.+..+++-.++.+....++++... +..++
T Consensus 2 ~~fL~~~~LGil~~f~~~l~d~~g---~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL------------~saL~ 66 (107)
T smart00802 2 ADFLKDHFLGILAVFSNILHDSSG---KKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACL------------QSALE 66 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHcCccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhC
Confidence 357778888888999888865321 123457899999999999877776666665554311 12222
Q ss_pred CCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhh
Q 046316 283 GTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFL 340 (966)
Q Consensus 283 ~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~ 340 (966)
.+++...+++.|...++.=+. +.+.+.+.+++..++|+.
T Consensus 67 ------------------~~eL~~~al~~W~~~i~~L~~-~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 67 ------------------IPELRSLALRCWHVLIKTLKE-EELGPLLDQIFAAILPLW 105 (107)
T ss_pred ------------------chhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhc
Confidence 145677777777776643221 244566666666666653
No 144
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=75.03 E-value=36 Score=35.33 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=18.3
Q ss_pred hhHhHHHHHHHHHHHHHHhhh-HHHHHHHHH
Q 046316 743 MAQHIRDLVAALVRRLQSAQI-AGLRSSLLL 772 (966)
Q Consensus 743 l~~~l~~iL~a~~~rL~~~~~-~~~~~~li~ 772 (966)
++.+++-+|..-+.-.....- +.+++.|.-
T Consensus 149 ~~kh~~~lL~~Yi~~~~~~~l~~~vr~~L~p 179 (223)
T PF10441_consen 149 LRKHAPYLLANYISLQLKYTLPPEVREALMP 179 (223)
T ss_pred HHhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 577888887777766655443 444444443
No 145
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=74.96 E-value=41 Score=32.68 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=67.2
Q ss_pred HHHHHHHhhcC------hhhHHHHHHHHHHHHhhcchhhcccccchHHHHHH---HHhhcCChhHHHHHHHHHHHHH-cC
Q 046316 534 SSLADLLHQAR------DETLHLVLETLQAAIKAGFLTASMEPMISPLILNI---WALHVSDPFISIDAIEVLEAIK-CS 603 (966)
Q Consensus 534 ~~L~~ll~~~~------~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l---~~~~~~d~~~~~~~~~~l~~l~-~~ 603 (966)
..|.+++++.. .+.+..+|.++.+....+. ..|..--.+++-++ ...+..|+.+.-.++.+|++++ ++
T Consensus 14 ~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~--vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S 91 (160)
T PF11841_consen 14 TLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI--VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNS 91 (160)
T ss_pred HHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc--CchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCC
Confidence 34445555443 2567777777777665321 12211111222222 1223336666667888999988 55
Q ss_pred CCcHHHHHH-hhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHH
Q 046316 604 PGCIHQLAS-RILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKA 654 (966)
Q Consensus 604 ~~~~~~l~~-~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~ 654 (966)
+..|....+ .-+|.+...++... ......++-++..+..+++..-...
T Consensus 92 ~~ly~~V~~evt~~~Li~hLq~~~---~~iq~naiaLinAL~~kA~~~~r~~ 140 (160)
T PF11841_consen 92 PKLYQLVEQEVTLESLIRHLQVSN---QEIQTNAIALINALFLKADDSKRKE 140 (160)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCC---HHHHHHHHHHHHHHHhcCChHHHHH
Confidence 666766554 44677777777642 2456678888989888887544443
No 146
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=74.87 E-value=2.2e+02 Score=35.11 Aligned_cols=331 Identities=14% Similarity=0.134 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHH
Q 046316 302 DSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVS 381 (966)
Q Consensus 302 ~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~ 381 (966)
+.++.-++-+|.++.+......-+.. ..++..++..+.-.. ..+...+..||..|+-
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~kM~~--~~iV~~Lv~~Ldr~n---------------------~ellil~v~fLkkLSi 319 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVELKMVN--KGIVSLLVKCLDREN---------------------EELLILAVTFLKKLSI 319 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHh--cCCHHHHHHHHcCCC---------------------HHHHHHHHHHHHHHcC
Confidence 46777778888888877665433322 236666666554211 1134567777777764
Q ss_pred HhChh---hHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcC
Q 046316 382 YCGRE---GIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGT 458 (966)
Q Consensus 382 ~~~~~---~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~ 458 (966)
..... .-..+++.+.+.+.. .+-...+.++.++..++..- +.... +.... ++...+ +.+.
T Consensus 320 ~~ENK~~m~~~giV~kL~kLl~s----------~~~~l~~~aLrlL~NLSfd~-~~R~~-mV~~G---lIPkLv-~LL~- 382 (708)
T PF05804_consen 320 FKENKDEMAESGIVEKLLKLLPS----------ENEDLVNVALRLLFNLSFDP-ELRSQ-MVSLG---LIPKLV-ELLK- 382 (708)
T ss_pred CHHHHHHHHHcCCHHHHHHHhcC----------CCHHHHHHHHHHHHHhCcCH-HHHHH-HHHCC---CcHHHH-HHhC-
Confidence 32211 112344444555532 12367888999888887421 11100 00011 122222 2232
Q ss_pred CCCCChhHHHHHHHHHHHhhhhc-Chh--HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC-CCCCccccHHHHHH
Q 046316 459 GVHQYPFLYARIFASVARFSSAI-SDG--VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFS 534 (966)
Q Consensus 459 ~~~~~~~Lr~Ra~~~l~~f~~~~-~~~--~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~ 534 (966)
.+.+ +.-|+-++...+..= ... .....++.++..|...+...|...+...+.++..+. ..+.+.. .+.++
T Consensus 383 -d~~~---~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~--g~gL~ 456 (708)
T PF05804_consen 383 -DPNF---REVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE--GNGLQ 456 (708)
T ss_pred -CCch---HHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh--cCcHH
Confidence 1222 223444444443310 000 111345556666554445566666655555555431 1111111 11223
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC--C-CcHHHH
Q 046316 535 SLADLLHQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS--P-GCIHQL 610 (966)
Q Consensus 535 ~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~--~-~~~~~l 610 (966)
.|+...-...+ ..+|..++.+-..++ ....+.+-+.| +..+ .++..++.+. .+|+..|++. | -.+..+
T Consensus 457 ~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~~~i~~-L~~~-v~~~~~ee~~---vE~LGiLaNL~~~~ld~~~l 528 (708)
T PF05804_consen 457 SLMKRALKTRD---PLLLKLIRNISQHDGPLKELFVDFIGD-LAKI-VSSGDSEEFV---VECLGILANLTIPDLDWAQL 528 (708)
T ss_pred HHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHHHHHHH-HHHH-hhcCCcHHHH---HHHHHHHHhcccCCcCHHHH
Confidence 33333333333 233333333332221 11112222222 2233 2233344444 4555555544 3 367666
Q ss_pred HH--hhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHH-HHHhHHHHHHHhc-cCchHHhhhhHHHHHHH
Q 046316 611 AS--RILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAY-DVCFDAVIRIILQ-SEDHSEMQNATECLATF 686 (966)
Q Consensus 611 ~~--~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~-~~~fp~l~~~l~~-s~d~~~lq~~~~~l~~~ 686 (966)
.+ .++|.+...+..... ..+++-+++-+++++...- .....+. .-+.+.++.++.. .+|.++.-..+-+|..|
T Consensus 529 l~~~~llp~L~~~L~~g~~-~dDl~LE~Vi~~gtla~d~--~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 529 LQEYNLLPWLKDLLKPGAS-EDDLLLEVVILLGTLASDP--ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHhCCHHHHHHHHhCCCCC-ChHHHHHHHHHHHHHHCCH--HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 64 689999999985543 2355556666666665321 1111111 1345667777763 34444444445566666
Q ss_pred Hhc
Q 046316 687 ISG 689 (966)
Q Consensus 687 i~~ 689 (966)
+.+
T Consensus 606 l~h 608 (708)
T PF05804_consen 606 LFH 608 (708)
T ss_pred HcC
Confidence 665
No 147
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=74.75 E-value=29 Score=41.45 Aligned_cols=112 Identities=29% Similarity=0.293 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhc-cCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcccc
Q 046316 71 SEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAY-DWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDA 149 (966)
Q Consensus 71 ~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~-D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~ 149 (966)
++.|+.|=..|...+.+.+..|+..+-.++...+.. |+|--=.-++|.|.++-...++......+|.|+..+.+.++.
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~- 462 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK- 462 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH-
Confidence 333444444444444567777887777777777754 777544568888877744434667788889999888876654
Q ss_pred chhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Q 046316 150 IVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTA 189 (966)
Q Consensus 150 ~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~ 189 (966)
..+++++.|.+..+-. ..+.+....+++|..++.
T Consensus 463 --~~v~d~~lpi~~~~~~----~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 463 --AAVLDELLPILKCIKT----RDPAIVMGFLRIYEALAL 496 (700)
T ss_pred --HHhHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHh
Confidence 2344444444444322 234455556677766553
No 148
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=73.33 E-value=1e+02 Score=33.66 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhh-
Q 046316 75 EVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPK- 153 (966)
Q Consensus 75 ~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~- 153 (966)
..+.+.++.++.+++..||...-.|++..+-.|- +-=.+.++.+.+.++. ++......|++++.++.-....+.+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 5666777788888889999999999999998884 3335678888888865 477788899999998876544333322
Q ss_pred -------hhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 046316 154 -------LVPVLFPVLHTIVSFPESYDRYVRTKALSIVYS 186 (966)
Q Consensus 154 -------i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~ 186 (966)
-...+...+...+.+. +..+|..|+.-+-.
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~EGl~K 140 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSE---NPELQAIAVEGLCK 140 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 2345666777777655 35576666554443
No 149
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=73.26 E-value=1.6e+02 Score=36.11 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHH
Q 046316 631 GLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLD 710 (966)
Q Consensus 631 ~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~ 710 (966)
...-.+|-+|+.+++.-|+-+...+-..+|+.|+.++....+..++-.|+-||-.++=.-+..+ ++++..+|.
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l-------~~~L~~Lf~ 155 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL-------GPHLPDLFN 155 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh-------hHHHHHHHH
Confidence 3456789999999999888777765567899999999988888888888888888877644322 679999999
Q ss_pred HHHhhc
Q 046316 711 AASRLL 716 (966)
Q Consensus 711 i~~~lL 716 (966)
|+.|++
T Consensus 156 If~Rl~ 161 (668)
T PF04388_consen 156 IFGRLL 161 (668)
T ss_pred HHHHHH
Confidence 999997
No 150
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.77 E-value=2.1e+02 Score=35.25 Aligned_cols=181 Identities=13% Similarity=0.082 Sum_probs=104.8
Q ss_pred CCChhHHHHHHHHHHHhhhhc---ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAI---SDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLA 537 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~---~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~ 537 (966)
++.+-.|+-|+..+.++.+.- +-.....++...+..|.++ +.-|-..|++++..+|+--++ .+ ++.+.+.+.
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcevy~e-~i---l~dL~e~Y~ 812 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEVYPE-DI---LPDLSEEYL 812 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHhcch-hh---HHHHHHHHH
Confidence 678889999999999999842 2255667888888888744 677889999988888875322 11 222223333
Q ss_pred HHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCCh--hHHHHHHHHHHHHHcCCC-cHHHHHHh
Q 046316 538 DLLHQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDP--FISIDAIEVLEAIKCSPG-CIHQLASR 613 (966)
Q Consensus 538 ~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~--~~~~~~~~~l~~l~~~~~-~~~~l~~~ 613 (966)
+--+....|....|=|++..++..-. ....| . ..++..|.+..+|| .+|+.+...+..++..-. -.......
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y---~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKY---K-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHHHHH---H-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 32222323433334466655554322 11111 1 24556666666666 468888888888774311 11111122
Q ss_pred hhcchHhhhcCCCCCCc-hhhHHHHHHHHHHhhcCChhHHH
Q 046316 614 ILPYVGPILNNPQQQPD-GLVAGSLDLLTMLLKSASTDVVK 653 (966)
Q Consensus 614 ~lP~l~~~l~~~~~~~~-~~~~~al~ll~~l~~~~~~~l~~ 653 (966)
++--|..+... +++ .....|.+++.-++++.+..+.+
T Consensus 889 v~~~Il~l~~~---d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 889 VLQLILSLETT---DGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred HHHHHHHHHcc---CCchhhHHHHHHHHHHHHhccchhhHH
Confidence 22222222222 333 34468899999999988755544
No 151
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.49 E-value=80 Score=33.66 Aligned_cols=134 Identities=24% Similarity=0.252 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCC-----HHHhHHHHHHHHhhccC--c-HHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHhh
Q 046316 15 LLNCLSATLDPN-----QEVRSFAEVSLNQASLQ--P-AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLD 86 (966)
Q Consensus 15 l~~~L~~~ls~d-----~~~R~~AE~~L~~~~~~--p-A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L~ 86 (966)
+-.++.+.-+++ ...++.|+.--.-.+.+ | -+-.+..|.++.++.. ++.
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~-------------~df---------- 169 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDK-------------DDF---------- 169 (262)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCH-------------HHH----------
Confidence 334444444444 67788786544444333 2 4566777777766421 122
Q ss_pred hchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHh
Q 046316 87 DTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIV 166 (966)
Q Consensus 87 ~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~ 166 (966)
+..+++.|..+=||+.+.+.+..+++.+.++ -.......|++|+.++...+-+ .+++++++..+++++
T Consensus 170 ---------l~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~-~~w~~~~~L~iL~~ll~~~d~~--~~~~~dlispllrlL 237 (262)
T PF14225_consen 170 ---------LSQVVSYLREAFFPDHEFQILTFLLGLLENG-PPWLRRKTLQILKVLLPHVDMR--SPHGADLISPLLRLL 237 (262)
T ss_pred ---------HHHHHHHHHHHhCchhHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhccccCC--CCcchHHHHHHHHHh
Confidence 2334455555567999999999999999874 6677889999999999876543 237889999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHH
Q 046316 167 SFPESYDRYVRTKALSIVYSCTA 189 (966)
Q Consensus 167 ~~~~~~~~~~r~~al~i~~~~~~ 189 (966)
+.+. ...|++|+...+.
T Consensus 238 ~t~~------~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 238 QTDL------WMEALEVLDEIVT 254 (262)
T ss_pred CCcc------HHHHHHHHHHHHh
Confidence 7653 2346777766554
No 152
>PLN03205 ATR interacting protein; Provisional
Probab=71.57 E-value=1.5e+02 Score=32.81 Aligned_cols=248 Identities=11% Similarity=0.181 Sum_probs=132.4
Q ss_pred CCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhh----ccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 046316 108 WPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSAD----LDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSI 183 (966)
Q Consensus 108 ~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~----l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i 183 (966)
|--+|-.||..+.+.....+......-|+...+-|... ..+|.|+. ..+|..+.+++.... +..+++.|+.+
T Consensus 365 ~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~--~~VfESiaQLLkkEa--Gl~VqKealhL 440 (652)
T PLN03205 365 WDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTDAYTARESFVS--KEVFESISLLLRKEG--GLHVRKEAIHL 440 (652)
T ss_pred ccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccchhHHHHHhcc--hHHHHHHHHHHHHhc--cchhhHHHHHH
Confidence 44688888888777654434555666777777776643 22344543 357888888887653 46788888888
Q ss_pred HHH---HHHHHHhhhccch---------hHH-HHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhc
Q 046316 184 VYS---CTAMLGVMSGVCK---------TEM-FALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNF 250 (966)
Q Consensus 184 ~~~---~~~~l~~~~~~~~---------~~~-~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f 250 (966)
++- |-..+.......+ ..- .....+-|...++-+..++..+ ..+..+.++++.++-.|..+++.=
T Consensus 441 LfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~--~~s~~dIeLck~aiimLAflASSG 518 (652)
T PLN03205 441 FYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGKIFEGLADCLTSP--RKTSEDLELCRNVIMILALAASSG 518 (652)
T ss_pred HHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHHHHHHHHHHHcCC--CCChhhhHHHHHHHHHHHHHHhcC
Confidence 763 3333333321111 000 0122345666677777777653 234567889999888888777532
Q ss_pred --c-hh-hHHhh---HHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccch---HHHHHHHHHHHHHHhcChh
Q 046316 251 --P-SL-AESEF---LVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSL---DSFVIQLFEFLLTIVGSAK 320 (966)
Q Consensus 251 --~-~~-~~~~~---~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~---~~l~~~~~efl~~~~~~~~ 320 (966)
+ +. ..+-+ ..|+..+.+.+.+- ..++.+. . .+..-.+ .-++.+++-++..+++++.
T Consensus 519 k~GfEilv~hkl~~~~NFLmLILqvLvSe------md~e~s~------~--~~~~e~~KaRtLLmREaLILLNRLvSn~~ 584 (652)
T PLN03205 519 NSGYELLSNHKLPQDSNFLMLILHLLVAE------IDSESTE------F--HPKAEIFKARTLLMREILILLNRLVSGLS 584 (652)
T ss_pred CCCceeeecccCCCCccHHHHHHHHHHHH------hhhhhhc------c--CCcHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 11 22212 24666666665541 1111110 0 0111112 1256688889999998877
Q ss_pred HHHHHHHhH---HHHHHHHH-HhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhh
Q 046316 321 LVKVIASNV---RELVYHTI-AFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREG 387 (966)
Q Consensus 321 ~~~~l~~~l---~~li~~li-~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~ 387 (966)
+.+..-..+ .......| -.-+++..+.-.|..| ...|..+..=+.+|++.|.+.+
T Consensus 585 ySa~vL~vLT~sRdmAsLTIDiAnRLsq~~q~l~~sd------------n~~~qmreseIveLaq~fkkRV 643 (652)
T PLN03205 585 SSATILKELTKSRDMASLTVDAATRLSRKRNLLGKPE------------NSVERMRNTEIMDLARIFKKRV 643 (652)
T ss_pred cchHHHHHHHhhhhhhheehHHhhhcchhhhhccCch------------hHHHHhhhHHHHHHHHHHHHHH
Confidence 654321110 11111223 3345666666666654 1123333334667777776554
No 153
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=71.19 E-value=80 Score=28.50 Aligned_cols=104 Identities=11% Similarity=0.123 Sum_probs=63.7
Q ss_pred HHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhcc
Q 046316 203 FALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIE 282 (966)
Q Consensus 203 ~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~ 282 (966)
..|+.+++-..+..|...+..--+ ......|+++++.+..+.+.-++.+....++++.. + +..++
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~---~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~----L--------~sal~ 66 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRG---KKPIPEKKRALRSIEELIKLGGSHISSARPQIMAC----L--------QSALE 66 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc---CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----H--------HHHhC
Confidence 356777888888888888765111 23356899999999999985556665555554431 1 11111
Q ss_pred CCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhh
Q 046316 283 GTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFL 340 (966)
Q Consensus 283 ~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~ 340 (966)
.+++...+++.|...++.=+. +.+.+.+++++..++|+.
T Consensus 67 ------------------~~~l~~~al~~W~~fi~~L~~-~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 67 ------------------IPELREEALSCWNCFIKTLDE-EDLGPLLDQIFAILLPLW 105 (107)
T ss_pred ------------------ChhhHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHhc
Confidence 134556667777666543222 355677777777777664
No 154
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=70.41 E-value=1e+02 Score=33.76 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHh---ccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHH
Q 046316 631 GLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIIL---QSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRS 707 (966)
Q Consensus 631 ~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~---~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~ 707 (966)
.....++.+++.++...+...... ....++.+++.+. ++++.++...+..||.++++...-...-|+ ..++..
T Consensus 120 ~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~---~~~v~~ 195 (312)
T PF03224_consen 120 FIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK---SNGVSP 195 (312)
T ss_dssp HHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT---HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh---cCcHHH
Confidence 345667888888887766443331 1233455555544 345566678888888888875332222221 245666
Q ss_pred HHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 046316 708 LLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHI--RDLVAALVRRLQSAQIAGLRSSLLLIFARLVHM 780 (966)
Q Consensus 708 il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l--~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~ 780 (966)
+++++...-........-..=--+...-+..|..+..+.+ ..++..++.-+..+....++.-.+.+|-+++-.
T Consensus 196 l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 196 LFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 6665531110000000000000112222334444332211 125555555555555556666666677777655
No 155
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=69.48 E-value=22 Score=31.13 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=43.0
Q ss_pred CCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHH
Q 046316 363 ESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSE 429 (966)
Q Consensus 363 d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~ 429 (966)
++.|.+|.-|+.+|..++++|+.. .+.+.+-+.+.+...-.. ....+..+.+|+..+..++.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~-~~~L~~Ri~~tl~k~l~d----~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSS-YPTLQPRITRTLLKALLD----PKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHH
Confidence 457999999999999999999864 334444554444433211 12357789999999888854
No 156
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=68.78 E-value=2.1e+02 Score=32.34 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC----------h-
Q 046316 415 RMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS----------D- 483 (966)
Q Consensus 415 ~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~----------~- 483 (966)
-.|-||.-.+-+++....+... + -+..++++++ .......+.++.-+--|+.+++-++.... +
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~----~-i~~~~i~~~l-~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVT----S-ILMQYIQQLL-QQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHH-HHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred CcHHHHHHHHHHHHHHHhHHHH----H-HHHHHHHHHH-HHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 4567888888888765322110 1 1233444433 22222235667888889999998877531 0
Q ss_pred hHHHHHHHHH-HhhhcC--CCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc
Q 046316 484 GVLEHFLSAA-ITTIAM--DVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA 543 (966)
Q Consensus 484 ~~~~~~l~~~-~~~L~~--~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 543 (966)
-...++|... +.-|++ +..+.+|..|++.+..|-...+ .+.+..+++.+.+.+...
T Consensus 300 v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~ 358 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSS 358 (370)
T ss_dssp S-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS
T ss_pred ccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCC
Confidence 1234555443 333442 2345789999999998876532 345666666776666643
No 157
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.54 E-value=48 Score=39.47 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=51.2
Q ss_pred HHHhhhhcCCCCCChhHHHHHHHHHHHhhhh---cChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 450 QMITEDIGTGVHQYPFLYARIFASVARFSSA---ISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 450 ~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~---~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
.+++.... +...-+|.|+|..+.+.... ++...+..+...+...+. |..+.||+.|+.||..|-++
T Consensus 88 ~hlLRg~E---skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~-Drep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 88 YHLLRGTE---SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK-DREPNVRIQAVLALSRLQGD 156 (892)
T ss_pred HHHHhccc---CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHhcC
Confidence 34544433 67788999999999999873 456677777777777776 55789999999999998865
No 158
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=67.81 E-value=11 Score=34.00 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=52.2
Q ss_pred ChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCC-CCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHH
Q 046316 463 YPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMD-VPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADL 539 (966)
Q Consensus 463 ~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~-~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~l 539 (966)
...-|-|++-.++.+.+... .....+.+.+..+|+.. ...-.|..|+++...|+.....+.+.|.+.+++-.+++.
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 34678999999999888543 44555555555555431 133589999999999998765666777777666666554
No 159
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=67.65 E-value=4.6e+02 Score=36.11 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHhccCC-------CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccch----------
Q 046316 89 HRKICTAISMAVASIAAYDWP-------EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIV---------- 151 (966)
Q Consensus 89 ~~kIr~~~a~~Is~Ia~~D~P-------~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~---------- 151 (966)
+..+-...-.++..|...-|+ +...+++..+.+...+..+.+.-..|+..|..+..++.+..+
T Consensus 1237 ~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~ 1316 (1780)
T PLN03076 1237 HKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKE 1316 (1780)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccc
Confidence 344444445556667654333 233455555555554433455556667766655444311000
Q ss_pred ----------------------hhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Q 046316 152 ----------------------PKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAM 190 (966)
Q Consensus 152 ----------------------~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~ 190 (966)
.....--+|.|..+..-......++|..|+..+..++..
T Consensus 1317 ~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076 1317 APPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred cccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 011122355555543322234688999999988777753
No 160
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.61 E-value=1.4e+02 Score=32.91 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=69.1
Q ss_pred hcCChhHHHHHHHHHHHHH-cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhH
Q 046316 583 HVSDPFISIDAIEVLEAIK-CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFD 661 (966)
Q Consensus 583 ~~~d~~~~~~~~~~l~~l~-~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp 661 (966)
+..++.-+..+.+-|+.++ ++...+.-+--..++.+...+++.. ..+...|..++++.+++-|...-..+=...++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~---~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSD---AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 4556666667777777766 3333222222233444444666543 36788999999999999874333322223578
Q ss_pred HHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 662 AVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 662 ~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
.|+.++..++...+...+.-++.+.|++..
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 888888877777788899999999999744
No 161
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.61 E-value=24 Score=45.62 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCC
Q 046316 90 RKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFP 169 (966)
Q Consensus 90 ~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~ 169 (966)
..+-..++.+|++++..| |++|+.|...++....+. +.+..+.|++.+..+++.+.+. .....++++|.+-.++...
T Consensus 1518 ~~v~~~li~~i~~~~~a~-~~d~~pl~~k~l~~trss-~~~~r~~ai~~~~~l~~~lge~-~~~lL~q~iPfLaEL~ED~ 1594 (1621)
T KOG1837|consen 1518 DIVSKLLIAEIASDSVAD-KDDLKPLNQKILKKTRSS-SRKARYLAIIQVKLLYTKLGEN-VIVLLPQSIPFLAELMEDE 1594 (1621)
T ss_pred hHHHHHHHHHHHhhccCC-hhhhHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhcch-hHHhhhhhhHHHHHHHhhh
Confidence 446677788888888887 455999999999998874 7889999999999999988874 3456799999999999765
Q ss_pred CCCcHHHHHHHHHHHHH
Q 046316 170 ESYDRYVRTKALSIVYS 186 (966)
Q Consensus 170 ~~~~~~~r~~al~i~~~ 186 (966)
. -++...+-++.+.
T Consensus 1595 ~---~~Ve~~~q~li~q 1608 (1621)
T KOG1837|consen 1595 D---DEVECLCQKLIRQ 1608 (1621)
T ss_pred H---HHHHHHHHHHHHH
Confidence 3 3455555554444
No 162
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=67.53 E-value=44 Score=32.68 Aligned_cols=70 Identities=7% Similarity=0.123 Sum_probs=44.4
Q ss_pred HHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHh
Q 046316 490 LSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIK 560 (966)
Q Consensus 490 l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~ 560 (966)
+.+++..|.+..-..-+..++.|+-..+....... .||++.++..++..+..++...+..++..+...++
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44445555422111223356777777665533334 89999999999999998888666666666655543
No 163
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.31 E-value=82 Score=38.46 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCC--CCccc--cHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh
Q 046316 486 LEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANK--GNFQP--QMMGLFSSLADLLHQARDETLHLVLETLQAAIKA 561 (966)
Q Consensus 486 ~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~--~~l~p--~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~ 561 (966)
...+.+.++..|..+.+.-+...||+||.++|+-.+. ..+.. -+|-+++.|+.+ .--|.-..+|+++-.+-..
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~ 285 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRR 285 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhh
Confidence 3456667777777666777888999999999987543 22222 344334444321 1124555566666554444
Q ss_pred cchhhcccccchHHHHHHHHhhcCChhHHH----HHHHHHHHHH-cC-CCcHHHHHHhhhcchHhhhcCCCCCCchhhHH
Q 046316 562 GFLTASMEPMISPLILNIWALHVSDPFISI----DAIEVLEAIK-CS-PGCIHQLASRILPYVGPILNNPQQQPDGLVAG 635 (966)
Q Consensus 562 ~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~----~~~~~l~~l~-~~-~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~ 635 (966)
++.+.--+..|+-.+.-+ .|+.. .|+.+....| ++ ++.+ .++--.+|.+..+|+....+ .++.
T Consensus 286 H~~AiL~AG~l~a~Lsyl-------DFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ealPlL~~lLs~~D~k---~ies 354 (1051)
T KOG0168|consen 286 HPKAILQAGALSAVLSYL-------DFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEALPLLTPLLSYQDKK---PIES 354 (1051)
T ss_pred ccHHHHhcccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHhhccch---hHHH
Confidence 431111112333222111 11222 2333444455 33 4444 35566789999998865432 3444
Q ss_pred HHHHHHHHhhcC
Q 046316 636 SLDLLTMLLKSA 647 (966)
Q Consensus 636 al~ll~~l~~~~ 647 (966)
.+-.++.++.+.
T Consensus 355 ~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 355 VCICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHHHhc
Confidence 455555555443
No 164
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=66.89 E-value=3e+02 Score=33.46 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=75.3
Q ss_pred CCCHHHhHHHHHHHHhhccCcHHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 046316 24 DPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASI 103 (966)
Q Consensus 24 s~d~~~R~~AE~~L~~~~~~pA~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~I 103 (966)
++|-+--+++|..|+-+. .+|++|.+.= +.-..--..|-..++..+.++---+|+.+|+.|+++
T Consensus 424 psn~dnarq~egalr~la------si~s~itk~s----------p~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 424 PSNIDNARQAEGALRLLA------SIKSFITKMS----------PAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred CCccccHHHHhhHHHHHH------HHHHHhccCc----------hHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 344344556787777663 4455554431 122222334445555566677788999999999999
Q ss_pred HhccCCCC--ccchHHHHHHHhcccCchhhHhHHHHHHHHH-HhhccccchhhhhhhHHHHHHHHhc
Q 046316 104 AAYDWPED--WPDLLPFLLKLITDQSNMNGVHGGLRCLALL-SADLDDAIVPKLVPVLFPVLHTIVS 167 (966)
Q Consensus 104 a~~D~P~~--WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l-~~~l~~~~~~~i~~~l~p~L~~i~~ 167 (966)
.-|||+. --++++...++++++.-|-.+.+|| +|.-+ +.+-..+.|...+|.++..|+.+-+
T Consensus 488 -eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAal-Alq~fi~~~q~h~k~sahVp~tmekLLsLSn 552 (970)
T COG5656 488 -EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAAL-ALQFFIFNEQSHEKFSAHVPETMEKLLSLSN 552 (970)
T ss_pred -HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHH-HHHHHHhchhhhHHHHhhhhHHHHHHHHhcc
Confidence 8898863 3567777788888742233444444 44444 3332334455666777777666654
No 165
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=66.68 E-value=1.3e+02 Score=34.91 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=69.5
Q ss_pred hHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCCCC-----CcHHHHHHHHHHHHHHHH
Q 046316 115 LLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPES-----YDRYVRTKALSIVYSCTA 189 (966)
Q Consensus 115 Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~-----~~~~~r~~al~i~~~~~~ 189 (966)
++..+.+.+.+ +|+...+.||..|.. +. + +.+++|.+...+..... .+.......++++++.+.
T Consensus 208 Yy~~It~a~~g-~~~~~r~eAL~sL~T------Ds---G-L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTG-SDEPLRQEALQSLET------DS---G-LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHhhcc------Cc---c-HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 55666666666 366777778777631 11 1 24566676666643211 122222334444443332
Q ss_pred HHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCC---CCCCCChhhHHHHHHHHHHHHHHhcchh
Q 046316 190 MLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPV---QPEDPDDWGVKMEVLKCLNQFIQNFPSL 253 (966)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~---~~~d~~~~~lk~~~~~~L~~l~~~f~~~ 253 (966)
+ -.-++.+|+-..|+.++.++-... .+.....|.+|--+.+.+..++.+|+..
T Consensus 277 ---------N--p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~ 332 (576)
T KOG2549|consen 277 ---------N--PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTL 332 (576)
T ss_pred ---------C--CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhH
Confidence 1 234667788888888777764321 1233467999999999999999999864
No 166
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=65.97 E-value=63 Score=38.73 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=61.2
Q ss_pred HHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHH
Q 046316 608 HQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFI 687 (966)
Q Consensus 608 ~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i 687 (966)
..+.+.++|+|...++.... -..+.+|..+..+.+.+..++.. +.++|.|.++..+++...+..++..|+..++
T Consensus 384 e~~~~~IlplL~~S~~~~~~---~iQ~~~L~~lptv~e~iD~~~vk---~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDV---QIQELALQILPTVAESIDVPFVK---QAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred HHHHHHHHHHHHHHhcCcch---hhHHHHHHhhhHHHHhccHHHHH---HHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 34668999999999987643 35678899999999998755544 3569999999888888999999999999998
Q ss_pred hc
Q 046316 688 SG 689 (966)
Q Consensus 688 ~~ 689 (966)
..
T Consensus 458 q~ 459 (700)
T KOG2137|consen 458 QR 459 (700)
T ss_pred HH
Confidence 43
No 167
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=65.46 E-value=2e+02 Score=37.08 Aligned_cols=193 Identities=12% Similarity=0.214 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc
Q 046316 464 PFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA 543 (966)
Q Consensus 464 ~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 543 (966)
.-+|..+.|+++.+..++.+......++.+...+..+ .-.+|.+...+++.+... -.+.+...++.++.....-+++.
T Consensus 143 apVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~-~w~ir~Ggll~iky~~ai-r~d~l~~~~~~vl~~~i~~L~ds 220 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLIKETLDILLQMLRQP-NWEIRHGGLLGIKYNVAI-RQDLLFQLLNLVLDFVIEGLEDS 220 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCc-chhheechHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhc
Confidence 3588999999999999998888888898888887644 567788887788777652 22334455556667777777787
Q ss_pred ChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhh--cCChhHH--HHHHHHHHHHHcCC---------CcHHHH
Q 046316 544 RDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALH--VSDPFIS--IDAIEVLEAIKCSP---------GCIHQL 610 (966)
Q Consensus 544 ~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~--~~d~~~~--~~~~~~l~~l~~~~---------~~~~~l 610 (966)
++|........++.+...-. ......+..++-.+|... ..| ... ......+.+++.-+ ..-..+
T Consensus 221 ~ddv~~~aa~~l~~~~s~~v--~l~~~~i~~lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~L 297 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSIQV--KLMVQKIAKLVHTLWSFLLELDD-LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGL 297 (1549)
T ss_pred chHHHHHHHHHhhhhhHHHH--hhhHhHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhcc
Confidence 87877766666655544321 000112322333334322 112 100 01111222222100 011356
Q ss_pred HHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhH-HH-HHHHHHhHHHHHHHh
Q 046316 611 ASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDV-VK-AAYDVCFDAVIRIIL 668 (966)
Q Consensus 611 ~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l-~~-~~~~~~fp~l~~~l~ 668 (966)
.++.+|++.+.+.. ....+++.+..++..-++.. |+ .+....|..+++.++
T Consensus 298 vp~~~p~l~~~i~s-------v~~a~l~~l~~lle~~~qs~~~~~~~l~~~~r~ifq~ll 350 (1549)
T KOG0392|consen 298 VPRLWPFLRHTISS-------VRRAALETLAMLLEADDQSDSWQIRILGKLFRKIFQILL 350 (1549)
T ss_pred chhhHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHHHHHHH
Confidence 67788888776653 34456677777765443221 22 233445666666665
No 168
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=65.06 E-value=63 Score=34.31 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=37.2
Q ss_pred HHhhHhhhHHHHHHHHHHhcC-C--CCCCCCChhhHHHHHHHHHHHHHHhcchh
Q 046316 203 FALMMPMLKPWMNHFSIILEH-P--VQPEDPDDWGVKMEVLKCLNQFIQNFPSL 253 (966)
Q Consensus 203 ~~~~~~~l~~w~~~~~~~L~~-~--~~~~d~~~~~lk~~~~~~L~~l~~~f~~~ 253 (966)
.-|+.|++.+.|+.++.++-. . ..|.|.+.+.+|.-+...+...+++|+..
T Consensus 268 ~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 268 YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 346778888888888887643 1 12334455789998888999999999863
No 169
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.37 E-value=3.2e+02 Score=32.96 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=34.4
Q ss_pred hhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhh-HhHHHHHHHHHHhhc
Q 046316 85 LDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNG-VHGGLRCLALLSADL 146 (966)
Q Consensus 85 L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~-~~~aL~~L~~l~~~l 146 (966)
|.+.++.-..-+-.||+.|+..|+-+.. -+.+...|.++++.+. ...|-.||-.+++..
T Consensus 120 L~srn~~fv~LAL~~I~niG~re~~ea~---~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s 179 (938)
T KOG1077|consen 120 LSSRNPTFVCLALHCIANIGSREMAEAF---ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS 179 (938)
T ss_pred hhcCCcHHHHHHHHHHHhhccHhHHHHh---hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC
Confidence 4555666666666788888888876643 3344455655554443 334445555666543
No 170
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=64.27 E-value=69 Score=35.75 Aligned_cols=150 Identities=14% Similarity=0.075 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc---ChhhHHHHHHHHHHHHhh
Q 046316 485 VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA---RDETLHLVLETLQAAIKA 561 (966)
Q Consensus 485 ~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~---~~d~l~~~le~l~~~i~~ 561 (966)
-.+.||..+.+.+..+ +...|..|...| -.+ ..+++.+|.+++-+..-.... ....+..+|..+...+.-
T Consensus 175 Elq~yf~~It~a~~~~-~~~~r~~aL~sL---~tD---~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 175 ELQLYFEEITEALVGS-NEEKRREALQSL---RTD---PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHh---ccC---CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 3667888888887633 444444444443 333 234444444444444333221 345677777777777764
Q ss_pred cc-hhhcccccchHHHHHHH-Hhhc-C------ChhHHHHHHHHHHHHH-cCCCcHHHHHHhhhcchHhhhcCCCCCCch
Q 046316 562 GF-LTASMEPMISPLILNIW-ALHV-S------DPFISIDAIEVLEAIK-CSPGCIHQLASRILPYVGPILNNPQQQPDG 631 (966)
Q Consensus 562 ~~-~~~~~~~~l~p~~l~l~-~~~~-~------d~~~~~~~~~~l~~l~-~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~ 631 (966)
.. +...|..+|+|.++... ++.. . +..+|..+-.++..++ ..+..|..+..+++-++.+++-++... ..
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~-~~ 326 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKP-LT 326 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCC-cc
Confidence 44 66667778889888664 2221 1 1258888889999998 457778888899998888888755321 12
Q ss_pred hhHHHHHHHHH
Q 046316 632 LVAGSLDLLTM 642 (966)
Q Consensus 632 ~~~~al~ll~~ 642 (966)
....|+-.|..
T Consensus 327 ~~YGAi~GL~~ 337 (343)
T cd08050 327 THYGAIVGLSA 337 (343)
T ss_pred hhhHHHHHHHH
Confidence 23444444443
No 171
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=64.16 E-value=2.4e+02 Score=31.85 Aligned_cols=131 Identities=18% Similarity=0.100 Sum_probs=74.1
Q ss_pred HHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHH-----HHHhh
Q 046316 641 TMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLD-----AASRL 715 (966)
Q Consensus 641 ~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~-----i~~~l 715 (966)
..++++.|.--....+....+.+...++.+ +.++...|..+++.++... ..++.+++ .+.+-
T Consensus 8 v~l~~~~p~l~~~~~~~~~~~~i~~~lL~~-~~~vraa~yRilRy~i~d~------------~~l~~~~~l~id~~ii~S 74 (371)
T PF14664_consen 8 VDLLKRHPTLKYDLVLSFFGERIQCMLLSD-SKEVRAAGYRILRYLISDE------------ESLQILLKLHIDIFIIRS 74 (371)
T ss_pred HHHHHhCchhhhhhhHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCH------------HHHHHHHHcCCchhhHhh
Confidence 344455552122222233345555555544 4899999999999988752 22222322 12233
Q ss_pred cC-CCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 046316 716 LN-PDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFI 789 (966)
Q Consensus 716 L~-~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~~~~~~~~~l 789 (966)
|+ +.-.+.....+-+++-.++..-++ ....=..++++++.-... +...++.-.+..+|-+.+. ||+.+.
T Consensus 75 L~~~~~~~~ER~QALkliR~~l~~~~~-~~~~~~~vvralvaiae~-~~D~lr~~cletL~El~l~---~P~lv~ 144 (371)
T PF14664_consen 75 LDRDNKNDVEREQALKLIRAFLEIKKG-PKEIPRGVVRALVAIAEH-EDDRLRRICLETLCELALL---NPELVA 144 (371)
T ss_pred hcccCCChHHHHHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHhh---CHHHHH
Confidence 43 222344566788888888876322 112223555555544332 4467888888899999998 888643
No 172
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=62.91 E-value=2.7e+02 Score=31.50 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHH
Q 046316 370 VSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLE 449 (966)
Q Consensus 370 ~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~ 449 (966)
.++.-|+.-+.....++++..++..+..++++. +.|+. +++-.+... ++ .. .++|+.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d------------~sr~~---lf~~~a~~~---k~---~~--~~~fl~ 121 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSED------------RSRVD---LFHDYAHKL---KR---TE--WLSFLN 121 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC------------chHHH---HHHHHHHhh---hc---cc--hHHHHH
Confidence 345566666667777788888999999988863 22222 233333221 11 01 233343
Q ss_pred HHHhhhhcCCCCCChhHHHHHHHHHHHhhhhc----ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 450 QMITEDIGTGVHQYPFLYARIFASVARFSSAI----SDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 450 ~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~----~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
.++ ...+|+...+.|++++++..- ...-+.-++..+-..|++..+.--+..|+++|+.++..
T Consensus 122 -----ll~---r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~ 187 (442)
T KOG2759|consen 122 -----LLN---RQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV 187 (442)
T ss_pred -----HHh---cCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 233 678899888888888887652 21122223333333333322333345677777777653
No 173
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.48 E-value=3.7e+02 Score=32.97 Aligned_cols=126 Identities=14% Similarity=0.214 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSA 492 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~ 492 (966)
+...|=.||..+.++-- +. +.+++--.|..... +..|++|..|...+.|.... .++.-.++ ..
T Consensus 121 N~LiRasALRvlSsIRv-----------p~-IaPI~llAIk~~~~---D~s~yVRk~AA~AIpKLYsL-d~e~k~qL-~e 183 (968)
T KOG1060|consen 121 NQLIRASALRVLSSIRV-----------PM-IAPIMLLAIKKAVT---DPSPYVRKTAAHAIPKLYSL-DPEQKDQL-EE 183 (968)
T ss_pred cHHHHHHHHHHHHhcch-----------hh-HHHHHHHHHHHHhc---CCcHHHHHHHHHhhHHHhcC-ChhhHHHH-HH
Confidence 35677778888877632 11 33334444444333 89999999999999998765 33333344 44
Q ss_pred HHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHh
Q 046316 493 AITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIK 560 (966)
Q Consensus 493 ~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~ 560 (966)
++..|-.|.++.|--+|+-|+...|.+. -+.+-++ +..|++++.+.++=....++++|....+
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~evCPer-ldLIHkn----yrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEVCPER-LDLIHKN----YRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHhchhH-HHHhhHH----HHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 5555556777888888999999999763 1344444 3688899999888777888888877754
No 174
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.47 E-value=3.6e+02 Score=32.87 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCC--CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc
Q 046316 76 VIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPE--DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL 146 (966)
Q Consensus 76 ~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~--~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l 146 (966)
++-+-|..++.+.++-+|+.++.++++.-..+ |+ +=-.+++.|..++.+ .++..+-+|+..|.+|.+.-
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-~~~~~~~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-PDLVEDSGLVDALKDLLSD-SNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-hhhccccchhHHHHHHhcC-CCchHHHHHHHHHHHHHHhC
Confidence 44455666778888999999999999987665 43 335699999999987 48899999999999998753
No 175
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=61.89 E-value=1.8e+02 Score=29.11 Aligned_cols=101 Identities=10% Similarity=0.091 Sum_probs=68.6
Q ss_pred ccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Q 046316 112 WPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAML 191 (966)
Q Consensus 112 WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l 191 (966)
..-+||..+..+... +.....-|.+...++++.-..+.+-+++|++++.+-+.+++. +.++...+++++...+..-
T Consensus 36 y~~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr---~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 36 YHHYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR---DPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhhHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhh
Confidence 456899999999875 444555667777777766334567788899999998888754 4677777888777654321
Q ss_pred HhhhccchhHHHHhhHhhhHHHHHHHHHHhcCC
Q 046316 192 GVMSGVCKTEMFALMMPMLKPWMNHFSIILEHP 224 (966)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~ 224 (966)
..+.+.+.|++.+.++.+-...+..
T Consensus 112 --------~~vG~aLvPyyrqLLp~ln~f~~k~ 136 (183)
T PF10274_consen 112 --------DMVGEALVPYYRQLLPVLNLFKNKN 136 (183)
T ss_pred --------hhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1255667777777776666544443
No 176
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=61.85 E-value=4.3e+02 Score=33.59 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=77.7
Q ss_pred HHHHHHH--HHhcCCCHHHhHHHHHHHHhhccC----c---HHHHHHHHhh-----hccccccccccCCCCChHHHHHHH
Q 046316 13 QWLLNCL--SATLDPNQEVRSFAEVSLNQASLQ----P---AAVLLKHFIK-----KHWQEGEESFELPAVSSEEKEVIR 78 (966)
Q Consensus 13 ~~l~~~L--~~~ls~d~~~R~~AE~~L~~~~~~----p---A~i~LKn~I~-----~~W~~~~~~~~~~~i~~~~K~~IR 78 (966)
++|..+| .+..+++-+.|++|-+.|++.-.. | ..+..-||+. +.|..- ..+-..-...|
T Consensus 469 ~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l-------~~~ia~~~~y~ 541 (1133)
T KOG1943|consen 469 QSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDL-------CVSIAEFSGYR 541 (1133)
T ss_pred HHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHH-------hHHHHhhhhHH
Confidence 4455554 556889999999999999976554 3 2233333322 122211 11111112223
Q ss_pred HHHHH-----HhhhchHHHHHHHHHHHHHHHhccCCCCcc-chHHHHHHHhcccCchhhHhHHHHHHHHHHhh
Q 046316 79 KLLLS-----SLDDTHRKICTAISMAVASIAAYDWPEDWP-DLLPFLLKLITDQSNMNGVHGGLRCLALLSAD 145 (966)
Q Consensus 79 ~~Ll~-----~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP-~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~ 145 (966)
+-+++ -+..=+.+||-+.|+++.+++.+. |+.-- ..++.++..+.+. +..-.||...+..++...
T Consensus 542 ~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~-pk~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 542 EPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE-PKYLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh-HHhhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHH
Confidence 33333 245668999999999999988765 66543 5677777777664 888899998888887653
No 177
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=61.82 E-value=1.9e+02 Score=35.58 Aligned_cols=129 Identities=17% Similarity=0.165 Sum_probs=79.4
Q ss_pred chHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhh-hHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH
Q 046316 114 DLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVP-VLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLG 192 (966)
Q Consensus 114 ~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~-~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~ 192 (966)
.|+..|-.++..+ ..+..+|.+|..++..-.. .+..|+. .+|+.|++.+.... +..+-..|+.++-.++-.
T Consensus 70 ~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~-~l~~i~~t~Lf~~LLk~L~~D~--~~~~~~~al~~LimlLP~-- 141 (668)
T PF04388_consen 70 HLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPP-WLYKILQTPLFKSLLKCLQFDT--SITVVSSALLVLIMLLPH-- 141 (668)
T ss_pred HHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCc-hHHHHhcChhHHHHHHHHhhcc--cHHHHHHHHHHHHHHhcc--
Confidence 6888888888653 5778899999888875332 2333433 57888888886553 333333444433332221
Q ss_pred hhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCC-CCC-CCh--hhHHHHHHHHHHHHHHhcchhhHHhhH
Q 046316 193 VMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQ-PED-PDD--WGVKMEVLKCLNQFIQNFPSLAESEFL 259 (966)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~-~~d-~~~--~~lk~~~~~~L~~l~~~f~~~~~~~~~ 259 (966)
++..+.++++..+.+|..++..... +.. ++. ..+...++..++.|..-||--|-.|+.
T Consensus 142 ---------ip~~l~~~L~~Lf~If~Rl~~W~~~~~~~~~~~~~~~l~~~~~~lFt~LYGlyP~NF~~flr 203 (668)
T PF04388_consen 142 ---------IPSSLGPHLPDLFNIFGRLLSWERKNPGSVPEVYLIHLQASVYALFTRLYGLYPCNFLSFLR 203 (668)
T ss_pred ---------ccchhhHHHHHHHHHHHHHHHcccCCCCCccccccccchhhHHHHHHHHHhcccchHHHHHH
Confidence 3445677899999999999865421 111 111 244555666788888888875555543
No 178
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=61.63 E-value=2.4e+02 Score=30.58 Aligned_cols=87 Identities=14% Similarity=0.282 Sum_probs=56.8
Q ss_pred HHHHHHhhhhc-ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHH----HHHHHHHHHHhhcCh
Q 046316 471 FASVARFSSAI-SDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMM----GLFSSLADLLHQARD 545 (966)
Q Consensus 471 ~~~l~~f~~~~-~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~----~il~~L~~ll~~~~~ 545 (966)
.-++.|+.... +.....+++..+-.+|..+ +..||+-||+.+..+++++..+.+...+. .|+..++..+-..++
T Consensus 64 VscLERLfkakegahlapnlmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 64 VSCLERLFKAKEGAHLAPNLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHhhccchhhchhhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 35566665543 3345556666666666644 67899999999999999876555544433 355555555555566
Q ss_pred hhHHHHHHHHHHH
Q 046316 546 ETLHLVLETLQAA 558 (966)
Q Consensus 546 d~l~~~le~l~~~ 558 (966)
++-...+|+|..+
T Consensus 143 eVAkAAiesikri 155 (524)
T KOG4413|consen 143 EVAKAAIESIKRI 155 (524)
T ss_pred HHHHHHHHHHHHH
Confidence 6666777777655
No 179
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.40 E-value=28 Score=40.08 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHH
Q 046316 415 RMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAI 494 (966)
Q Consensus 415 ~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~ 494 (966)
..|-||..|+|-++- .+ .+. +...+-+.. .+.++++|+-...++|-++..........+++
T Consensus 567 DVrRAAViAlGfvc~-----~D-----~~~---lv~tvelLs---~shN~hVR~g~AvaLGiacag~G~~~a~diL~--- 627 (926)
T COG5116 567 DVRRAAVIALGFVCC-----DD-----RDL---LVGTVELLS---ESHNFHVRAGVAVALGIACAGTGDKVATDILE--- 627 (926)
T ss_pred HHHHHHHHheeeeEe-----cC-----cch---hhHHHHHhh---hccchhhhhhhHHHhhhhhcCCccHHHHHHHH---
Confidence 457777777777642 11 121 323332222 37889999999999999987754444444444
Q ss_pred hhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Q 046316 495 TTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAI 559 (966)
Q Consensus 495 ~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i 559 (966)
.|.-|...-||-+||.|+.-++-.+ .+.+.|....|.+.+.+++.+-.++.+..+=-++..-+
T Consensus 628 -~L~~D~~dfVRQ~AmIa~~mIl~Q~-n~~Lnp~v~~I~k~f~~vI~~Khe~glaklGA~laqGi 690 (926)
T COG5116 628 -ALMYDTNDFVRQSAMIAVGMILMQC-NPELNPNVKRIIKKFNRVIVDKHESGLAKLGAVLAQGI 690 (926)
T ss_pred -HHhhCcHHHHHHHHHHHHHHHHhhc-CcccChhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhh
Confidence 3444556689999999998776443 35689999999999999999888887665544544443
No 180
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.89 E-value=17 Score=33.37 Aligned_cols=83 Identities=13% Similarity=0.243 Sum_probs=55.0
Q ss_pred hhccccccccccCCCCChHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhccCCCC---c--cchHHHHHHHhcccC
Q 046316 54 KKHWQEGEESFELPAVSSEEKEVIRKLLLSSL-DDTHRKICTAISMAVASIAAYDWPED---W--PDLLPFLLKLITDQS 127 (966)
Q Consensus 54 ~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L-~~~~~kIr~~~a~~Is~Ia~~D~P~~---W--P~Ll~~L~~~l~s~~ 127 (966)
.++|+..... +.+++-+.+|. |.+.| .+.++.+-..+|+=|+.++++ ||+. . -..=..+++++++ .
T Consensus 27 e~FW~ENa~k-----f~~~~~~llk~-L~~lL~~s~d~~~laVac~Dig~~vr~-~p~gr~ii~~lg~K~~vM~Lm~h-~ 98 (119)
T PF11698_consen 27 EKFWRENADK-----FEENNFELLKK-LIKLLDKSDDPTTLAVACHDIGEFVRH-YPNGRNIIEKLGAKERVMELMNH-E 98 (119)
T ss_dssp HHHHHHHSGG-----GSSGGGHHHHH-HHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS--S
T ss_pred ccHHHHHHHH-----HHHcccHHHHH-HHHHHccCCCcceeehhhcchHHHHHH-ChhHHHHHHhcChHHHHHHHhcC-C
Confidence 3455544443 45555555555 67777 455788888889999999987 4652 1 1233556777877 4
Q ss_pred chhhHhHHHHHHHHHHh
Q 046316 128 NMNGVHGGLRCLALLSA 144 (966)
Q Consensus 128 ~~~~~~~aL~~L~~l~~ 144 (966)
|++..+-||.|+..++-
T Consensus 99 d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 99 DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88999999999988753
No 181
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=58.29 E-value=14 Score=35.32 Aligned_cols=128 Identities=18% Similarity=0.219 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC---------------CCCCcccc
Q 046316 464 PFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA---------------NKGNFQPQ 528 (966)
Q Consensus 464 ~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~---------------~~~~l~p~ 528 (966)
++++.+.+.+++.++...-|+.-..+++.+++.+.++ ..-.....+.|..+.++. .++.+...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~--~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS--PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 6788888888888877632222334555555555432 111112333333333321 01335556
Q ss_pred HHHHHHHHHHHHhhcC----hhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHH
Q 046316 529 MMGLFSSLADLLHQAR----DETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVL 597 (966)
Q Consensus 529 l~~il~~L~~ll~~~~----~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l 597 (966)
.+.+++.+.++++... .+....+++++...++--+...-..+.+++.++++ ..+|.++..|.+||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~----l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQL----LQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHH----TTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHH----cCCHHHHHHHHHhC
Confidence 7778888888887765 56677888888887764331111112355555544 46677788888875
No 182
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=57.95 E-value=1.4e+02 Score=32.77 Aligned_cols=147 Identities=13% Similarity=0.176 Sum_probs=72.6
Q ss_pred chHHhhhhHHHHHHHHhcCcc---ceeee----ccCCcchHHHHHHHHHhhcCCCC----CCccccchHHHHHHHHHhCC
Q 046316 672 DHSEMQNATECLATFISGGRQ---LMLVW----GGDSGFTMRSLLDAASRLLNPDL----ESSGSLFVGSYILQLILHLP 740 (966)
Q Consensus 672 d~~~lq~~~~~l~~~i~~~~~---~~~~~----~~~~~~~l~~il~i~~~lL~~~~----~~~~~~~vg~Lv~~li~~~~ 740 (966)
..++.-.++.||++|+.+..+ .|++- +.+ .........++..|++++. +-...++++-++..++..-.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~-~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYAS-GNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT---SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 445566677777777764332 12211 001 0100111125555554322 23346788888888776321
Q ss_pred h---h---h-------hHhHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCc
Q 046316 741 S---Q---M-------AQHIRDLVAALVRRLQS----AQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNS 803 (966)
Q Consensus 741 ~---~---l-------~~~l~~iL~a~~~rL~~----~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~ 803 (966)
. . + ++-...+++.+...|.+ .+.+.....+++.++.-++. +|..+=+||+. .+.
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e---~p~AV~~FL~~------~s~ 200 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE---CPDAVNDFLSE------GSN 200 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT----HHHHHHHHCS------TTH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC---CHHHHHHHHcC------cch
Confidence 1 0 1 11111234444433333 44577778888888888888 99998889952 356
Q ss_pred HHHHHHHHhcccccccccchhHHHHHHHHHHH
Q 046316 804 FVYVMSEWTKLQGEIQGAYPIKVTTTALALLL 835 (966)
Q Consensus 804 L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll 835 (966)
++.++.. ..+.-+-.+.+-|||.++
T Consensus 201 l~~Li~~-------~~~~~~~~~~VqGL~A~L 225 (312)
T PF04869_consen 201 LQSLIEF-------SNQSSSEDVLVQGLCAFL 225 (312)
T ss_dssp HHHHHHH-------HS--TCCCHHHHHHHHHH
T ss_pred HHHHHHH-------hhcCCCCcchHHHHHHHH
Confidence 7777776 223334455666776665
No 183
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=57.83 E-value=1.3e+02 Score=33.44 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=68.0
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhh----cC-ChhHHHHHHHHHHHHHcCCCc-H
Q 046316 534 SSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALH----VS-DPFISIDAIEVLEAIKCSPGC-I 607 (966)
Q Consensus 534 ~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~----~~-d~~~~~~~~~~l~~l~~~~~~-~ 607 (966)
+.+...+...++.....+|++|..--+. .+++|++.+..+.. .+ |-......+.+..+|..+|.. .
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~tD~gl--------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRTDPGL--------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHL 252 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhccCCCc--------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCch
Confidence 3333333334445556667666433222 35667776654443 33 344455677888999988874 4
Q ss_pred HHHHHhhhcchHhhhcCC-------CCCCchhhHHHHHHHHHHhhcCCh
Q 046316 608 HQLASRILPYVGPILNNP-------QQQPDGLVAGSLDLLTMLLKSAST 649 (966)
Q Consensus 608 ~~l~~~~lP~l~~~l~~~-------~~~~~~~~~~al~ll~~l~~~~~~ 649 (966)
.++...++|.+..++-.. ..+.+.+.+.|-.++..+++..+.
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~ 301 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFST 301 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCC
Confidence 667778999998887422 223457778999999999987653
No 184
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.49 E-value=3e+02 Score=30.39 Aligned_cols=191 Identities=14% Similarity=0.170 Sum_probs=101.4
Q ss_pred HHHHhhhcCCCCCcEehhHHHHHHhhcccC-CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcc-
Q 046316 491 SAAITTIAMDVPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASM- 568 (966)
Q Consensus 491 ~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~- 568 (966)
+.+++.+. ..++-||.+|++|+.++.-+. ....+...-|.++..|..++...+....-..--++..+-+...+....
T Consensus 211 pvLVsll~-s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 211 PVLVSLLK-SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred hhhhhhhc-cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 44455554 347889999999999886542 233455555667788999998887765544433443332211122111
Q ss_pred cccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHH-HhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcC
Q 046316 569 EPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLA-SRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSA 647 (966)
Q Consensus 569 ~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~-~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~ 647 (966)
..--.|.++++. +...-| +..+.+-|+..++-.|..-..+. .-++..+..++..... .+....|.+.|-.+.-..
T Consensus 290 ~ag~lP~lv~Ll-qs~~~p-lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dn--EeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 290 EAGSLPLLVELL-QSPMGP-LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDN--EEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hcCCchHHHHHH-hCcchh-HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCc--hhhhhhHHHHHHHHhhhh
Confidence 112248888883 333333 23345667777764444322222 3355566667764321 124456666666665432
Q ss_pred ChhHHHHHH-HHHhHHHHHHHhccCchHHhhhhHHHHHHHHh
Q 046316 648 STDVVKAAY-DVCFDAVIRIILQSEDHSEMQNATECLATFIS 688 (966)
Q Consensus 648 ~~~l~~~~~-~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~ 688 (966)
...... ++ .-..|.+..+++.+ -.++......|+.-+-.
T Consensus 366 e~n~~~-i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 366 EHNVSV-IRESGAIPKLIELLLDG-PVSVQSEISACIAQLAL 405 (550)
T ss_pred hhhhHH-HhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHh
Confidence 211111 11 12356667776633 34566666667665433
No 185
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.19 E-value=78 Score=36.21 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=72.2
Q ss_pred hhchHHHHHHHHHHHHHHHhccCCC----CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHH
Q 046316 86 DDTHRKICTAISMAVASIAAYDWPE----DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPV 161 (966)
Q Consensus 86 ~~~~~kIr~~~a~~Is~Ia~~D~P~----~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~ 161 (966)
.+|+.++|..++-+++..|.- -|+ +-+.++..++..|-+..+...++-+|.+|..+.......++..+.-.+--.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~-~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASG-APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhcc-CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 468889999999999998875 575 678899999888877667788999999999999877665554443333334
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHH
Q 046316 162 LHTIVSFPESYDRYVRTKALSIVYSCT 188 (966)
Q Consensus 162 L~~i~~~~~~~~~~~r~~al~i~~~~~ 188 (966)
+-+++.+. ..++|..|.-+|....
T Consensus 347 lR~l~~se---~~~~R~aa~~Lfg~L~ 370 (533)
T KOG2032|consen 347 LRTLFDSE---DDKMRAAAFVLFGALA 370 (533)
T ss_pred HHHHHHhc---ChhhhhhHHHHHHHHH
Confidence 44555443 3567777777776544
No 186
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=56.80 E-value=4.8e+02 Score=32.46 Aligned_cols=348 Identities=11% Similarity=0.054 Sum_probs=169.8
Q ss_pred HHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 046316 347 IHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAF 426 (966)
Q Consensus 347 ~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~ 426 (966)
...+...+..|+.=..|+..++|-+|.+-+..+...+.... .+...+...+-+.. +...|+.+...--.+..
T Consensus 271 ~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~------~d~~~~v~~~~~~~~~~ 342 (759)
T KOG0211|consen 271 EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAV------EDGSWRVSYMVADKFSE 342 (759)
T ss_pred HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHh------cChhHHHHHHHhhhhhh
Confidence 45566666667654445568999999999999999987653 22222222221111 22368888877666666
Q ss_pred hHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC----hhH-HHHHHHHHHhhhcCCC
Q 046316 427 LSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS----DGV-LEHFLSAAITTIAMDV 501 (966)
Q Consensus 427 l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~----~~~-~~~~l~~~~~~L~~~~ 501 (966)
++..+.. +. ...+..+.+... ++ +..--.|..+.-=..+|....+ ++. ...+|..+-.. -.++
T Consensus 343 L~~~~~~--~~--~~~~~~~~~~~l----~~---~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l-v~d~ 410 (759)
T KOG0211|consen 343 LSSAVGP--SA--TRTQLVPPVSNL----LK---DEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL-VLDN 410 (759)
T ss_pred HHHHhcc--cc--CcccchhhHHHH----hc---chhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH-Hhcc
Confidence 6554432 11 112221212222 22 3333344444445555555443 221 22334443333 3466
Q ss_pred CCcEehhHHHHHHhhcccCCC-CCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc--hhhcccccchHHHHH
Q 046316 502 PPPVKVGACRALSELLPKANK-GNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF--LTASMEPMISPLILN 578 (966)
Q Consensus 502 ~~~Vr~~A~~al~~~~~~~~~-~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~--~~~~~~~~l~p~~l~ 578 (966)
...||.+.+.-+....+..++ ..+.+.++..+ ..+++..-+++..+++.+........ -...+.+.+.|.+..
T Consensus 411 ~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~----~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~e 486 (759)
T KOG0211|consen 411 ALHVRSALASVITGLSPILPKERTISELLPLLI----GNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVE 486 (759)
T ss_pred cchHHHHHhccccccCccCCcCcCccccChhhh----hhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhh
Confidence 778888777666655554333 34445554333 23333333333333333322222211 111222345565555
Q ss_pred HHHhhcCC--hhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCCCC-CchhhHHHHHHHHHHhhcCChhHHHHH
Q 046316 579 IWALHVSD--PFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQ-PDGLVAGSLDLLTMLLKSASTDVVKAA 655 (966)
Q Consensus 579 l~~~~~~d--~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~~-~~~~~~~al~ll~~l~~~~~~~l~~~~ 655 (966)
+ ..| .-++.++++-+-.++.- . ..+.+-|.+...+.....+ .+...+.+.-.+..++...+ .-|..
T Consensus 487 l----~~d~~wRvr~ail~~ip~la~q--~---~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~- 555 (759)
T KOG0211|consen 487 L----AEDLLWRVRLAILEYIPQLALQ--L---GVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWAR- 555 (759)
T ss_pred h----ccchhHHHHHHHHHHHHHHHHh--h---hhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH-
Confidence 4 223 22344444444333311 0 1233334444444433222 23455666777777776655 34443
Q ss_pred HHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHH
Q 046316 656 YDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQL 735 (966)
Q Consensus 656 ~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~l 735 (966)
....|.++....+. .--+.....-++..++...++++ +.+.++.++..+....+. +..+++++.+..+
T Consensus 556 -~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei---------~~~~Llp~~~~l~~D~va-nVR~nvak~L~~i 623 (759)
T KOG0211|consen 556 -LEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEI---------TCEDLLPVFLDLVKDPVA-NVRINVAKHLPKI 623 (759)
T ss_pred -HHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHH---------HHHHHhHHHHHhccCCch-hhhhhHHHHHHHH
Confidence 22234444433321 12334555556666666544433 467788888887644332 4556777877776
Q ss_pred HHhCCh
Q 046316 736 ILHLPS 741 (966)
Q Consensus 736 i~~~~~ 741 (966)
...+..
T Consensus 624 ~~~L~~ 629 (759)
T KOG0211|consen 624 LKLLDE 629 (759)
T ss_pred Hhhcch
Confidence 655543
No 187
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=56.76 E-value=25 Score=25.18 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=18.2
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHh
Q 046316 81 LLSSLDDTHRKICTAISMAVASIAA 105 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is~Ia~ 105 (966)
|+++|.+++..++..++.+++.|++
T Consensus 17 Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 17 LVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4455577778888888888887764
No 188
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=56.46 E-value=2.9e+02 Score=29.95 Aligned_cols=140 Identities=13% Similarity=0.097 Sum_probs=86.3
Q ss_pred hhhcCC-CCCChhHHHHHHHHHHHhhhhcCh----h----HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC----
Q 046316 454 EDIGTG-VHQYPFLYARIFASVARFSSAISD----G----VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA---- 520 (966)
Q Consensus 454 ~~l~~~-~~~~~~Lr~Ra~~~l~~f~~~~~~----~----~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~---- 520 (966)
|+++.+ ..+...++.-+|..+|++.+..+. + ....+|..++.++..+ +..|--+|..+++++....
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-ddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcHHHHH
Confidence 455522 256678899999999999987652 1 1345677778887643 5566677888887765431
Q ss_pred ---CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhccc--ccchHHHHHHHHhhcCChhHHHHHHH
Q 046316 521 ---NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASME--PMISPLILNIWALHVSDPFISIDAIE 595 (966)
Q Consensus 521 ---~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~--~~l~p~~l~l~~~~~~d~~~~~~~~~ 595 (966)
+.+.+-| -.+.++...+.+=..+.++|-|+.+++..+..+.+. +-++..+..= .+...|..++.-+++
T Consensus 164 aiFeSellDd------lhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE-lkGteDtLVianciE 236 (524)
T KOG4413|consen 164 AIFESELLDD------LHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE-LKGTEDTLVIANCIE 236 (524)
T ss_pred HhcccccCCh------HHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH-hcCCcceeehhhHHH
Confidence 1122222 234455566666678889999999998876222221 1233333222 334567788877777
Q ss_pred HHHHHH
Q 046316 596 VLEAIK 601 (966)
Q Consensus 596 ~l~~l~ 601 (966)
+..+|.
T Consensus 237 lvteLa 242 (524)
T KOG4413|consen 237 LVTELA 242 (524)
T ss_pred HHHHHH
Confidence 777776
No 189
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=55.79 E-value=1.1e+02 Score=28.77 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=63.7
Q ss_pred hchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhh-hHHHHHHHH
Q 046316 87 DTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVP-VLFPVLHTI 165 (966)
Q Consensus 87 ~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~-~l~p~L~~i 165 (966)
+++-.+-..+|..|... +..=-+.+..|-..|+++ +++....||.+|..+++.-....-..++. ..+..+..+
T Consensus 15 ~~D~~~il~icd~I~~~-----~~~~k~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l 88 (133)
T cd03561 15 EPDWALNLELCDLINLK-----PNGPKEAARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKI 88 (133)
T ss_pred CccHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHH
Confidence 35555555566665543 333346788888888884 89999999999999998755422234444 566667777
Q ss_pred hcCCCCCcHHHHHHHHHHHHHHHH
Q 046316 166 VSFPESYDRYVRTKALSIVYSCTA 189 (966)
Q Consensus 166 ~~~~~~~~~~~r~~al~i~~~~~~ 189 (966)
+......+..+|.+++.++..-..
T Consensus 89 ~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 89 AKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHH
Confidence 765423566787777776665444
No 190
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.70 E-value=2e+02 Score=41.29 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHh---hcc-ccchhhhhhhHHHHHHHHhcCCCC------CcHHHHHHHHHHHHHHHHHHHhhhccchhHH
Q 046316 133 HGGLRCLALLSA---DLD-DAIVPKLVPVLFPVLHTIVSFPES------YDRYVRTKALSIVYSCTAMLGVMSGVCKTEM 202 (966)
Q Consensus 133 ~~aL~~L~~l~~---~l~-~~~~~~i~~~l~p~L~~i~~~~~~------~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~ 202 (966)
..=+..+.++.+ .+. .+.+. ....++|.+++.+..... ...+.|...+.|++.|..
T Consensus 22 ~~klk~~~E~~~~le~~~~~~~~~-~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~------------- 87 (3550)
T KOG0889|consen 22 ESKLKMLVEIRDFLENLFSPESYL-FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPH------------- 87 (3550)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhccc-------------
Confidence 344555555544 332 24444 788899999999976431 235678888888888764
Q ss_pred HHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHh
Q 046316 203 FALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSS 272 (966)
Q Consensus 203 ~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 272 (966)
.+.+.++-...+..+.++|..++ + ..-.-++|++..+++.|...+..+++.|+..+.+++.+.
T Consensus 88 ~e~~~~~~~~~~~~~~~vl~~dN-----e--en~~l~lkii~~l~r~f~~~~~~~v~~fl~~V~~ly~~~ 150 (3550)
T KOG0889|consen 88 NEVFKPFSQELLKVLMRVLTNDN-----E--ENAILCLKIITDLFRQFKSLVEQHVQPFLDIVIDLYKNM 150 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-----c--hhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh
Confidence 34456667777788888887632 1 233456888999999999999999999999888887763
No 191
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=55.59 E-value=1.4e+02 Score=32.69 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=81.0
Q ss_pred chHHHHHHHhcccCchhhHh-HHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH
Q 046316 114 DLLPFLLKLITDQSNMNGVH-GGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLG 192 (966)
Q Consensus 114 ~Ll~~L~~~l~s~~~~~~~~-~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~ 192 (966)
.+-..|-++|+.. =|..|| -||.+...|++.+..+.+..=..-..|-|+..+... +.++|...+++|..-+.-
T Consensus 54 ~v~krLaqCL~P~-LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~a---si~Vkp~lL~i~e~~~lp-- 127 (307)
T PF04118_consen 54 QVSKRLAQCLNPA-LPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYA---SIQVKPQLLDIYEKYYLP-- 127 (307)
T ss_pred HHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhcC--
Confidence 3666777788653 567777 699999999999888766544455666666666532 467887777777653321
Q ss_pred hhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHH
Q 046316 193 VMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFV 270 (966)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~ 270 (966)
....+.+.+++.+-.+.-.++. +.-.....+++.+.++....+.. .|++.+|..+.
T Consensus 128 ---------L~~~L~p~l~~li~slLpGLed-------e~sE~~~~~~~ll~~l~~~v~~~------~F~~~lwl~ii 183 (307)
T PF04118_consen 128 ---------LGPALRPCLKGLILSLLPGLED-------EGSEFFDRTLKLLDKLKEAVGDK------YFWQCLWLCII 183 (307)
T ss_pred ---------ccHHHHHHHHHHHHHhcccccc-------CCchHHHHHHHHHHHHHHhcChh------HHHHHHHHHHh
Confidence 2224455566555555444442 22236677788888877776643 45666665543
No 192
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.24 E-value=1.6e+02 Score=34.32 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHH---cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHH
Q 046316 589 ISIDAIEVLEAIK---CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIR 665 (966)
Q Consensus 589 ~~~~~~~~l~~l~---~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~ 665 (966)
.|..+.+.+..+. +..+++...+.++.- + ......++.+|-.+..++++.++.--.. +|-+++
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e-------~--~~~We~~EAaLF~l~~~~~~~~~~e~~i-----~pevl~ 433 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE-------N--NASWEEVEAALFILRAVAKNVSPEENTI-----MPEVLK 433 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc-------C--CCchHHHHHHHHHHHHHhccCCccccch-----HHHHHH
Confidence 4555556665554 445566555444433 1 1246788999999999999998543332 566677
Q ss_pred HHhc-cCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcC
Q 046316 666 IILQ-SEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLN 717 (966)
Q Consensus 666 ~l~~-s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~ 717 (966)
++.+ ..-..+++.++..+..|= .|-...+..++.+++.+...+.
T Consensus 434 ~i~nlp~Q~~~~~ts~ll~g~~~--------ew~~~~p~~le~v~~~~~~~~~ 478 (559)
T KOG2081|consen 434 LICNLPEQAPLRYTSILLLGEYS--------EWVEQHPELLEPVLRYIRQGLQ 478 (559)
T ss_pred HHhCCccchhHHHHHHHHHHHHH--------HHHHhCcHHHHHHHHHHHHHhh
Confidence 6663 222337777777766652 2322114567788888776653
No 193
>PF14961 BROMI: Broad-minded protein
Probab=54.88 E-value=6e+02 Score=33.01 Aligned_cols=136 Identities=14% Similarity=0.098 Sum_probs=83.0
Q ss_pred HHHHHHhh-hchHHHHHHHHHHHHHHHhccCC--CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhh
Q 046316 79 KLLLSSLD-DTHRKICTAISMAVASIAAYDWP--EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLV 155 (966)
Q Consensus 79 ~~Ll~~L~-~~~~kIr~~~a~~Is~Ia~~D~P--~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~ 155 (966)
+.+++-|+ +.++.+|..+...+..+--.|-. +.||.|-..|...|.++ |+..-+.+|+.....+.--.-..-.++.
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDp-D~~is~~~L~f~Ak~fssSpl~~trEiY 242 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDP-DPEISDASLRFHAKMFSSSPLNMTREIY 242 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCCchhhhHHHH
Confidence 44555554 45689999999888887777766 58999999999999885 7777888888877776543221223444
Q ss_pred hhHHHHHHHHhcCCCC------CcHHHH----HHHHHHHHHHHHHHHhhhccchhHHHH----hhHhhhHHHHHHHHHHh
Q 046316 156 PVLFPVLHTIVSFPES------YDRYVR----TKALSIVYSCTAMLGVMSGVCKTEMFA----LMMPMLKPWMNHFSIIL 221 (966)
Q Consensus 156 ~~l~p~L~~i~~~~~~------~~~~~r----~~al~i~~~~~~~l~~~~~~~~~~~~~----~~~~~l~~w~~~~~~~L 221 (966)
..+..++...+.+..+ .+..++ .+.+|.++-..++. .+++. +-..++...++.++.+|
T Consensus 243 tsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq--------~E~ps~WiRhpeK~mEeIVEsTLsLL 314 (1296)
T PF14961_consen 243 TSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQ--------KEVPSFWIRHPEKYMEEIVESTLSLL 314 (1296)
T ss_pred HHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHH--------HhcchhhhcCcHHHHHHHHHHHHHHh
Confidence 5555555554432211 011111 23455555444432 22333 33456677777777777
Q ss_pred cC
Q 046316 222 EH 223 (966)
Q Consensus 222 ~~ 223 (966)
..
T Consensus 315 s~ 316 (1296)
T PF14961_consen 315 ST 316 (1296)
T ss_pred cc
Confidence 65
No 194
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=54.86 E-value=1.9e+02 Score=34.82 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=73.0
Q ss_pred cchhhHHHHHHHHHHHHhCh-------hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcC
Q 046316 366 YSCRVSGALLLEEVVSYCGR-------EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSG 438 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~-------~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~ 438 (966)
.-+|.+|.--+..+..++.. .....+.+++.+.+..+.+. ++ -..+=.+|.+||.++..-
T Consensus 411 ~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~---~~~~~~~LkaLGN~g~~~------- 477 (574)
T smart00638 411 PYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK---GD---EEEIQLYLKALGNAGHPS------- 477 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc---CC---chheeeHHHhhhccCChh-------
Confidence 45677777777777664432 12355667777666654321 12 234566788888775421
Q ss_pred CccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHH
Q 046316 439 LTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALS 514 (966)
Q Consensus 439 ~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~ 514 (966)
....+..++. + .....+++|.-|+|.+.+++...+......+++...+. ..+.-||++|+.++-
T Consensus 478 -----~i~~l~~~l~---~-~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~---~e~~EvRiaA~~~lm 541 (574)
T smart00638 478 -----SIKVLEPYLE---G-AEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNR---AEPPEVRMAAVLVLM 541 (574)
T ss_pred -----HHHHHHHhcC---C-CCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCC---CCChHHHHHHHHHHH
Confidence 1122443432 1 12567899999999999998776654444444443222 335679999987774
No 195
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=54.79 E-value=1.3e+02 Score=31.58 Aligned_cols=123 Identities=18% Similarity=0.191 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCCHHHhHHHHHHHHhhccCc-HHH--HHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHh---h-
Q 046316 14 WLLNCLSATLDPNQEVRSFAEVSLNQASLQP-AAV--LLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSL---D- 86 (966)
Q Consensus 14 ~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p-A~i--~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L---~- 86 (966)
.+++.|-..-..++..+...=+-|..+..++ +.. .+=+.+.+-|....-.| +.-|..+....++.. .
T Consensus 20 ~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~~~~r~~~~~~~ 93 (234)
T PF12530_consen 20 PLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLLLILRIPSSFSS 93 (234)
T ss_pred HHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHHHHhhcccccCC
Confidence 3455554443333255555666666666665 222 34455677887543222 333333333333321 1
Q ss_pred -hchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHh-cccCchhhHhHHHHHHHHHHh
Q 046316 87 -DTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLI-TDQSNMNGVHGGLRCLALLSA 144 (966)
Q Consensus 87 -~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l-~s~~~~~~~~~aL~~L~~l~~ 144 (966)
+......-+.+.++..|+..+ |++|+++++.|.+++ ++ +++...--|+..+..+|+
T Consensus 94 ~~~~~~~~i~~a~s~~~ic~~~-p~~g~~ll~~ls~~L~~~-~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 94 KDEFWECLISIAASIRDICCSR-PDHGVDLLPLLSGCLNQS-CDEVAQALALEALAPLCE 151 (234)
T ss_pred CcchHHHHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHH
Confidence 233445556677888888877 889999999999999 55 466677788888999884
No 196
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=54.53 E-value=3.9e+02 Score=30.76 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHH
Q 046316 631 GLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLD 710 (966)
Q Consensus 631 ~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~ 710 (966)
.....++.+++.++...+..........++..+...+...++.+..+-+..||..+++...-...=|.. .++..+++
T Consensus 116 ~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~---~~v~~L~~ 192 (429)
T cd00256 116 FIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA---DGVPTLVK 192 (429)
T ss_pred hHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc---cCHHHHHH
Confidence 456778889999987655433333334455666666654455677888889999988865533222322 25556665
Q ss_pred HHH
Q 046316 711 AAS 713 (966)
Q Consensus 711 i~~ 713 (966)
++.
T Consensus 193 ~L~ 195 (429)
T cd00256 193 LLS 195 (429)
T ss_pred HHh
Confidence 554
No 197
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=53.80 E-value=4.7e+02 Score=31.47 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCC-CCCcEehhHHHHHHhhcccC
Q 046316 444 LGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMD-VPPPVKVGACRALSELLPKA 520 (966)
Q Consensus 444 ~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~-~~~~Vr~~A~~al~~~~~~~ 520 (966)
+-..|.++|+|-.+ ..+++.-.+|+.+ +.++....|+..+++.+.+. .+...|.+|+.+|.+|+...
T Consensus 312 Ll~~F~~~ILpT~~-----sr~vQFl~Fy~~s-----~~~~~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRA 379 (563)
T PF05327_consen 312 LLSIFESHILPTHK-----SRHVQFLLFYFCS-----LDPELADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARA 379 (563)
T ss_dssp HHHHHHHTCCCC-S------SSTTHHHHHHHT-----TSHHHHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHccCCCc-----cchHHHHHHHHHH-----cCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34446777776543 2344444444443 45666677777777776543 35678999999999998753
No 198
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=52.53 E-value=1.2e+02 Score=38.97 Aligned_cols=101 Identities=10% Similarity=-0.003 Sum_probs=70.6
Q ss_pred CCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHH
Q 046316 460 VHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADL 539 (966)
Q Consensus 460 ~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~l 539 (966)
.+.++.+|..|.-+++.+......+....+++.++..+... +..+|-.++..+-..+.......+.||.+=++.-|+..
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~-~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL-DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 48999999999999999988766677777888877776533 44455554444433333333456788888888888888
Q ss_pred HhhcChhhHHHHHHHHHHHHhh
Q 046316 540 LHQARDETLHLVLETLQAAIKA 561 (966)
Q Consensus 540 l~~~~~d~l~~~le~l~~~i~~ 561 (966)
+....+.....+-+++..++..
T Consensus 905 msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcc
Confidence 8877776666666666666643
No 199
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=51.71 E-value=1.6e+02 Score=28.84 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 046316 728 VGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFA 775 (966)
Q Consensus 728 vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa 775 (966)
+-.-+..++...+..--+++++++...++.+.++.. ...+.++.-++
T Consensus 107 vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~-~~~e~~~~qL~ 153 (160)
T PF11865_consen 107 VVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD-SLREFYFQQLA 153 (160)
T ss_pred HHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH-HHHHHHHHHHH
Confidence 334444555444444456666666666666654443 44443333333
No 200
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.32 E-value=2.1e+02 Score=34.31 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=88.0
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHH
Q 046316 160 PVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEV 239 (966)
Q Consensus 160 p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~ 239 (966)
|.+++-++.. +..+|..|..+|-...-+ .+ +...++.+...+..=+..+..+|+.+.| .+|..+
T Consensus 177 p~l~R~L~a~---Ns~VrsnAa~lf~~~fP~----~d--pd~~~e~mD~i~~kQf~~l~~LL~d~~p-------~VRS~a 240 (1005)
T KOG1949|consen 177 PILWRGLKAR---NSEVRSNAALLFVEAFPI----RD--PDLHAEEMDSIIQKQFEELYSLLEDPYP-------MVRSTA 240 (1005)
T ss_pred HHHHHhhccC---chhhhhhHHHHHHHhccC----CC--CCccHHHHHHHHHHHHHHHHHHhcCCCc-------hHHHHH
Confidence 4455555443 457888888887765543 11 1112233444555556667777876432 589999
Q ss_pred HHHHHHHHHhcchhhHHhhH-HHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcC
Q 046316 240 LKCLNQFIQNFPSLAESEFL-VVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGS 318 (966)
Q Consensus 240 ~~~L~~l~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~ 318 (966)
.+.+.++++.|=..+.+..- .++..+.+.+.. |+ . .++.+..|+-+..+.-+
T Consensus 241 ~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~---------------------dt----~--s~VR~svf~gl~~~l~n 293 (1005)
T KOG1949|consen 241 ILGVCKITSKFWEMIPPTILIDLLKKITDELAF---------------------DT----S--SDVRCSVFKGLPMILDN 293 (1005)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhh---------------------cc----c--hheehhHhcCcHHHHcC
Confidence 99999998888655444321 333322222111 11 1 36777888888877766
Q ss_pred hhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHh
Q 046316 319 AKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYC 383 (966)
Q Consensus 319 ~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~ 383 (966)
|-....++. +++.+=+.|+ |.+.++|.|+.++|..+-..+
T Consensus 294 p~sh~~le~----~Lpal~~~l~---------------------D~se~VRvA~vd~ll~ik~vr 333 (1005)
T KOG1949|consen 294 PLSHPLLEQ----LLPALRYSLH---------------------DNSEKVRVAFVDMLLKIKAVR 333 (1005)
T ss_pred ccchhHHHH----HHHhcchhhh---------------------ccchhHHHHHHHHHHHHHhhh
Confidence 644433332 3331112222 235678999999888776643
No 201
>PF05536 Neurochondrin: Neurochondrin
Probab=51.31 E-value=5e+02 Score=31.06 Aligned_cols=176 Identities=19% Similarity=0.137 Sum_probs=107.3
Q ss_pred HHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCC
Q 046316 509 ACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARD-ETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSD 586 (966)
Q Consensus 509 A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~-d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d 586 (966)
|+.-+..|+... .-.-.|.+..-+..|..++...+. ++...++++|..+.+... ...-+...-+|.+.++.. +.
T Consensus 77 avsvL~~f~~~~-~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~---~~ 152 (543)
T PF05536_consen 77 AVSVLAAFCRDP-ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIP---NQ 152 (543)
T ss_pred HHHHHHHHcCCh-hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHH---hC
Confidence 777778888742 112235555566677777877777 888999999988885433 222222344577776633 35
Q ss_pred hhHHHHHHHHHHHHHcCCC-----cHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCCh-----hHHHHHH
Q 046316 587 PFISIDAIEVLEAIKCSPG-----CIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAST-----DVVKAAY 656 (966)
Q Consensus 587 ~~~~~~~~~~l~~l~~~~~-----~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~-----~l~~~~~ 656 (966)
++....+..++..++...+ ........+++.+...+..... ..-..++++++.++...+. ...+...
T Consensus 153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~---~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHG---EDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 6666666666666653211 3344555667777777764322 3345678999999987731 1122223
Q ss_pred HHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 657 DVCFDAVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 657 ~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
.++...+..++.+--.+..+..++.+..+++...+
T Consensus 230 ~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 230 SDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 45566667776544456667777777777777543
No 202
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.95 E-value=12 Score=45.23 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=7.1
Q ss_pred EEecchHHHHHH
Q 046316 872 TVLPLPAKILTL 883 (966)
Q Consensus 872 t~ip~~~Ki~kl 883 (966)
+.||...-++.+
T Consensus 1354 aTi~v~R~~~Dl 1365 (1516)
T KOG1832|consen 1354 ATIPVDRCLLDL 1365 (1516)
T ss_pred eeeecccchhhh
Confidence 556666666655
No 203
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.47 E-value=7.7e+02 Score=33.02 Aligned_cols=225 Identities=10% Similarity=0.149 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchh---hhhhhHHHHHHH
Q 046316 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVP---KLVPVLFPVLHT 164 (966)
Q Consensus 88 ~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~---~i~~~l~p~L~~ 164 (966)
...+||--+..|++ ...+ ..|..++..+-..-... +.+.+..+......+..++-+..++ .-..+.++.+..
T Consensus 1049 ~s~~Irelv~rC~~--~nik--SGWk~if~i~~~aA~~~-~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~ 1123 (1514)
T KOG0929|consen 1049 SSAEIRELVVRCIS--SNIK--SGWKNIFKIFTTAASDS-SKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEE 1123 (1514)
T ss_pred CcchhHHHHHhhhh--hhhh--hhhhHHHHHHHHhhccc-hhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHH
Confidence 45678888899998 3333 36999988877666553 6667777777777666654433332 222333444444
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHH----HhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHH
Q 046316 165 IVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMF----ALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVL 240 (966)
Q Consensus 165 i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~ 240 (966)
...+.... .....+++..+-|..-+.-. .+....+ .........|++.+..+=..- ......+++..+
T Consensus 1124 F~~~~~~~--~~s~~aI~~lr~ca~k~~e~--~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~----~~~~~~vr~~al 1195 (1514)
T KOG0929|consen 1124 FTKNLGFP--DDSLNAIRFLRLCALKLAEG--VYNEKLKVGKDSEFDVWNSGWFPMLFQLSKII----NDYRLEVRKRAL 1195 (1514)
T ss_pred HHHhcCCC--ccchHHHHHHHHHHHHhccc--cchhhcccccccccccceeeeehhHhhhhHHh----hccHHHHHHHHH
Confidence 33322111 11122444455555432211 1111111 011223445655554432210 012346889999
Q ss_pred HHHHHHHHhcchhhHHhhHHHHHHHHHHHHH-hHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcCh
Q 046316 241 KCLNQFIQNFPSLAESEFLVVVRSLWQTFVS-SLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSA 319 (966)
Q Consensus 241 ~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~ 319 (966)
+.+..+...++..|.++ +|+.+-. +.+.| ..+.... +.. ..++|.. ....+++.++..+..
T Consensus 1196 ~vlF~il~~~g~~F~~~-------~We~v~~~~fpIF--~~~~~~~---~~~--~~~eW~~--tT~~~Al~~~v~lf~-- 1257 (1514)
T KOG0929|consen 1196 EVLFDILKEHGDDFSKE-------FWEDVFRILFPIF--DNVKLDE---DES--EKDEWLS--TTCNHALQALVDLFT-- 1257 (1514)
T ss_pred HHHHHHHHhhhhhccHH-------HHHHHHHheeecc--cccCccc---chh--hhhHHHH--HHHHHHHHHHHHHHH--
Confidence 99999999998766544 4544332 23333 1121110 011 2234653 455677777766652
Q ss_pred hHHHHHHHhHHHHHHHHHHhhcCC
Q 046316 320 KLVKVIASNVRELVYHTIAFLQMT 343 (966)
Q Consensus 320 ~~~~~l~~~l~~li~~li~~~~lt 343 (966)
.+++.+.+.|+.++..+..+++=.
T Consensus 1258 ~~~~~l~~lL~~~~~ll~~ci~~~ 1281 (1514)
T KOG0929|consen 1258 QFFKQLNNLLPKVLGLLVGCIKQD 1281 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344455555666666555555533
No 204
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=49.60 E-value=51 Score=28.86 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=57.5
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHh-cc-CCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhH
Q 046316 81 LLSSLDDTHRKICTAISMAVASIAA-YD-WPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVL 158 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is~Ia~-~D-~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l 158 (966)
.+.-|.++...||...-..+++... .+ ....+|.++..+...+++. |.-.-.+|.++|..+++...+ .+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~--------~v 78 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD--------EV 78 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH--------HH
Confidence 3455678888899888888887655 45 4467899999999999885 666667899999888876543 24
Q ss_pred HHHHHHHhcC
Q 046316 159 FPVLHTIVSF 168 (966)
Q Consensus 159 ~p~L~~i~~~ 168 (966)
+|.|...+.+
T Consensus 79 l~~L~~~y~~ 88 (92)
T PF10363_consen 79 LPILLDEYAD 88 (92)
T ss_pred HHHHHHHHhC
Confidence 5555555543
No 205
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.77 E-value=6.7e+02 Score=32.36 Aligned_cols=146 Identities=20% Similarity=0.182 Sum_probs=97.0
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLL 540 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll 540 (966)
.+.|-|++.|..++|||.-. +.++...-++..++.|...+++.||.-++-|+..|.=. .+..+.|+-+ .|..-+
T Consensus 934 ~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimeksp~p~IRsN~VvalgDlav~-fpnlie~~T~----~Ly~rL 1007 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR-FPNLIEPWTE----HLYRRL 1007 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhh-cccccchhhH----HHHHHh
Confidence 46699999999999999644 45677777888888887556889999998888776532 3456666664 666667
Q ss_pred hhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCCh--hHHHHHHHHHHHHHcCCC-cHHHHHHhhhc
Q 046316 541 HQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDP--FISIDAIEVLEAIKCSPG-CIHQLASRILP 616 (966)
Q Consensus 541 ~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~--~~~~~~~~~l~~l~~~~~-~~~~l~~~~lP 616 (966)
.+.+.++...++=++...+-.+. .+. .++... +.+..|| .++..+...|..|.+-.. .| .++|
T Consensus 1008 ~D~~~~vRkta~lvlshLILndmiKVK---Gql~eM-----A~cl~D~~~~IsdlAk~FF~Els~k~n~iy-----nlLP 1074 (1251)
T KOG0414|consen 1008 RDESPSVRKTALLVLSHLILNDMIKVK---GQLSEM-----ALCLEDPNAEISDLAKSFFKELSSKGNTIY-----NLLP 1074 (1251)
T ss_pred cCccHHHHHHHHHHHHHHHHhhhhHhc---ccHHHH-----HHHhcCCcHHHHHHHHHHHHHhhhcccchh-----hhch
Confidence 77777777777777777665443 111 233222 3355555 577778888888874432 33 3566
Q ss_pred chHhhhcCC
Q 046316 617 YVGPILNNP 625 (966)
Q Consensus 617 ~l~~~l~~~ 625 (966)
=|..-+.+.
T Consensus 1075 dil~~Ls~~ 1083 (1251)
T KOG0414|consen 1075 DILSRLSNG 1083 (1251)
T ss_pred HHHHhhccC
Confidence 666666544
No 206
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=47.56 E-value=38 Score=25.32 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhcc
Q 046316 72 EEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYD 107 (966)
Q Consensus 72 ~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D 107 (966)
.+.+++|+.+++.|...++..|.++..+|+++.+.+
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 467899999999997777888889999999887654
No 207
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=46.69 E-value=2.3e+02 Score=28.42 Aligned_cols=66 Identities=15% Similarity=0.050 Sum_probs=54.4
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcc
Q 046316 80 LLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLD 147 (966)
Q Consensus 80 ~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~ 147 (966)
.+++...+++.++|..+..+|..|.+.-+-+=| +.+|.|+.+.+++ ++...+.|...+.++.+...
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILRQGLVNPK-QCVPTLIALETSP-NPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-HHHhHhhhhhCCC-ChHHHHHHHHHHHHHHHHhH
Confidence 355666778899999999999999998875434 3899999998885 88889999999999887654
No 208
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=46.41 E-value=61 Score=27.93 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=42.4
Q ss_pred hhchHHHHHHHHHHHHHHHhccCC---CCccchHHHHHHHhcccCchhhHhHHHHHHHH
Q 046316 86 DDTHRKICTAISMAVASIAAYDWP---EDWPDLLPFLLKLITDQSNMNGVHGGLRCLAL 141 (966)
Q Consensus 86 ~~~~~kIr~~~a~~Is~Ia~~D~P---~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~ 141 (966)
..++..+|..+-.||.+|...-.. ..||.++..+-....++ +...+..|..++..
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~-~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN-DESLVRLAFQIVQL 85 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC-CccHHHHHHHHHhh
Confidence 345678888888888888765443 37999999998888764 77888888888754
No 209
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=44.76 E-value=5.4e+02 Score=29.63 Aligned_cols=188 Identities=18% Similarity=0.133 Sum_probs=92.8
Q ss_pred ccccchHHHHHHHHhhcCCh------hHHHHHHHHHHHHHcCCCcHHH-HHHhhhcchHhhhcCCCCCCchhhHHHHHHH
Q 046316 568 MEPMISPLILNIWALHVSDP------FISIDAIEVLEAIKCSPGCIHQ-LASRILPYVGPILNNPQQQPDGLVAGSLDLL 640 (966)
Q Consensus 568 ~~~~l~p~~l~l~~~~~~d~------~~~~~~~~~l~~l~~~~~~~~~-l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll 640 (966)
+.+.| |.++.+..+. .|+ .+...+.+|+..+++.+..... +-.--+|.+.++-..+.. -.+.++-++
T Consensus 102 ~v~~I-P~llev~~~~-~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~----~~d~alal~ 175 (698)
T KOG2611|consen 102 MVSRI-PLLLEVMSKG-IDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDG----SHDMALALK 175 (698)
T ss_pred HHHhh-hHHHHHHHhc-CCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCC----chhHHHHHH
Confidence 34455 8888885543 333 2566788899999877544443 345567777766554422 223444444
Q ss_pred HHHhhcCChhHHHHHHHHHhHHHHHHHhc---cCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcC
Q 046316 641 TMLLKSASTDVVKAAYDVCFDAVIRIILQ---SEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLN 717 (966)
Q Consensus 641 ~~l~~~~~~~l~~~~~~~~fp~l~~~l~~---s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~ 717 (966)
-.++....-.-|+.-. .-|-.+++-+.. ..+...-=..+..|...+.....+++--.-.+...-+++..=+.+.|.
T Consensus 176 Vlll~~~~~~cw~e~~-~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~IL~ 254 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETI-ERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVAILQ 254 (698)
T ss_pred HHHHHHHhcccCcCCH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHHHHh
Confidence 4444433322222211 112333333221 112222223455566555544433331000112233444444445555
Q ss_pred CCCCCccccchHHHHHHHHHhCChh--h-h----HhHH--HHHHHHHHHHHHhh
Q 046316 718 PDLESSGSLFVGSYILQLILHLPSQ--M-A----QHIR--DLVAALVRRLQSAQ 762 (966)
Q Consensus 718 ~~~~~~~~~~vg~Lv~~li~~~~~~--l-~----~~l~--~iL~a~~~rL~~~~ 762 (966)
..+..+-...+-.|+..+..-+|.+ + + -+++ +++...--||+-.+
T Consensus 255 ~kv~p~qr~pAL~Laa~~~hilG~~W~~~geq~t~fL~ll~~la~~evrl~lee 308 (698)
T KOG2611|consen 255 NKVAPSQRLPALILAANMMHILGEKWLLGGEQKTVFLPLLDILADREVRLVLEE 308 (698)
T ss_pred cccCchhcChHHHHHHHHHHHhchhhcccCCccceehhhhcchhhHHHHHhhhh
Confidence 5555555566777888888877765 2 2 2343 34555556666433
No 210
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=44.48 E-value=3.6e+02 Score=28.74 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCCC
Q 046316 91 KICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPE 170 (966)
Q Consensus 91 kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~ 170 (966)
......|..|+++|.. ...|+|-..+..+.+. .. ...=.-+..+++.+.+.-|+....+++-.+..++.+..
T Consensus 130 ~~~~~~A~~La~~a~~---~~~~~La~il~~ya~~--~f---r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~ 201 (262)
T PF14225_consen 130 QECIEIAEALAQVAEA---QGLPNLARILSSYAKG--RF---RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGP 201 (262)
T ss_pred HHHHHHHHHHHHHHHh---CCCccHHHHHHHHHhc--CC---CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCc
Confidence 4556788889998842 3566766665555443 11 23334455566555554456677778888888887542
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhc
Q 046316 171 SYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNF 250 (966)
Q Consensus 171 ~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f 250 (966)
.-+|..++++++.++..+.+- .+.-+.++..+.++++++ .-.+++++|..+++.-
T Consensus 202 ---~w~~~~~L~iL~~ll~~~d~~------------~~~~~dlispllrlL~t~----------~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 202 ---PWLRRKTLQILKVLLPHVDMR------------SPHGADLISPLLRLLQTD----------LWMEALEVLDEIVTRS 256 (262)
T ss_pred ---HHHHHHHHHHHHHHhccccCC------------CCcchHHHHHHHHHhCCc----------cHHHHHHHHHHHHhhc
Confidence 467888888888877653221 124455677778888762 3367888888777665
Q ss_pred chh
Q 046316 251 PSL 253 (966)
Q Consensus 251 ~~~ 253 (966)
+..
T Consensus 257 ~s~ 259 (262)
T PF14225_consen 257 GSP 259 (262)
T ss_pred ccc
Confidence 543
No 211
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=44.29 E-value=1.8e+02 Score=26.39 Aligned_cols=56 Identities=13% Similarity=0.060 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcccc
Q 046316 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDA 149 (966)
Q Consensus 88 ~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~ 149 (966)
++.+.-..+|.++. ++|+...+.+..|...|++. ++..+.-||.+|..+++.-++.
T Consensus 16 p~~~~i~~i~d~~~-----~~~~~~~~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~ 71 (115)
T cd00197 16 PDWPLIMEICDLIN-----ETNVGPKEAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGER 71 (115)
T ss_pred CCHHHHHHHHHHHH-----CCCccHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHH
Confidence 34444444444442 45788889999999999985 9999999999999999976653
No 212
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=43.75 E-value=2.8e+02 Score=29.34 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHH
Q 046316 303 SFVIQLFEFLLTIVGSAKLVKVI-ASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVS 381 (966)
Q Consensus 303 ~l~~~~~efl~~~~~~~~~~~~l-~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~ 381 (966)
.=++.++..+..++++|+++..| +.+ +..++.|++..+...- |.|| +|-++..++..+++
T Consensus 65 nRVcnaLaLlQ~vAshpetr~~Fl~a~---iplyLyPfL~tt~k~r------~~E~----------LRLtsLGVIgaLvK 125 (262)
T PF04078_consen 65 NRVCNALALLQCVASHPETRMPFLKAH---IPLYLYPFLNTTSKTR------PFEY----------LRLTSLGVIGALVK 125 (262)
T ss_dssp HHHHHHHHHHHHHHH-TTTHHHHHHTT---GGGGGHHHHH----SH------HHHH----------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHcC---chhhehhhhhcccccc------ccch----------hhHhHHHHHHHHHc
Confidence 56788999999999999998665 444 3344558887665432 2333 48888889999988
Q ss_pred HhChhhH
Q 046316 382 YCGREGI 388 (966)
Q Consensus 382 ~~~~~~~ 388 (966)
.-..++.
T Consensus 126 ~d~~evi 132 (262)
T PF04078_consen 126 TDDPEVI 132 (262)
T ss_dssp T--HHHH
T ss_pred CCcHHHH
Confidence 6554443
No 213
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=41.68 E-value=5.5e+02 Score=28.78 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHH
Q 046316 235 VKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLT 314 (966)
Q Consensus 235 lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~ 314 (966)
.-+.++.+|+--.-..|..+.+.++.++..+ +.+.. -..+...++||++.
T Consensus 251 ~a~~CI~aLtic~~EmP~s~~k~L~~iL~kL-------------s~i~t-----------------t~~~Ai~ILEFLs~ 300 (356)
T PF03542_consen 251 TAKPCIHALTICCYEMPDSMKKLLPSILLKL-------------SKIST-----------------TPNMAIHILEFLSS 300 (356)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------Hhhcc-----------------chhhHHHHHHHHHH
Confidence 3466778888777788877777766655421 11211 13677899999999
Q ss_pred HhcCh-hHHHHH-HHhHHHHHHHHHHhhcC
Q 046316 315 IVGSA-KLVKVI-ASNVRELVYHTIAFLQM 342 (966)
Q Consensus 315 ~~~~~-~~~~~l-~~~l~~li~~li~~~~l 342 (966)
+.+-| ..+.-| ......+....+||++-
T Consensus 301 L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~~ 330 (356)
T PF03542_consen 301 LSRLPNHLYSNFTEDEYKRVFAIALPYTQP 330 (356)
T ss_pred HhhCcHHHhcCCCHHHHHHHHHHHhhccch
Confidence 99888 665444 34455566666688653
No 214
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.07 E-value=36 Score=35.80 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHHH
Q 046316 876 LPAKILTLLADALIE 890 (966)
Q Consensus 876 ~~~Ki~klL~~~l~~ 890 (966)
+.-++=+||-.++..
T Consensus 10 aGnrm~~LL~~E~e~ 24 (240)
T PF05764_consen 10 AGNRMKKLLEEELEE 24 (240)
T ss_pred hhHHHHHHHHHHHhh
Confidence 455677888777654
No 215
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=40.25 E-value=49 Score=24.78 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhcc
Q 046316 73 EKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYD 107 (966)
Q Consensus 73 ~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D 107 (966)
+.+++|+.+++.|...+.. |.++.-+|+++.+.+
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4578999999998666655 888888888887655
No 216
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=37.66 E-value=1.4e+02 Score=33.75 Aligned_cols=123 Identities=14% Similarity=0.201 Sum_probs=62.3
Q ss_pred hhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHH-HHhHHHHHHHh-c--cCchHHhhhhHHHHHHHHh
Q 046316 613 RILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYD-VCFDAVIRIIL-Q--SEDHSEMQNATECLATFIS 688 (966)
Q Consensus 613 ~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~-~~fp~l~~~l~-~--s~d~~~lq~~~~~l~~~i~ 688 (966)
.++..+..|+++...-+..+...++++++.++.+=|..++.. .+ -+.+.+++.+. . --..+++...-.+|.++.-
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l-~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSIL-QEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHH-HHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 556677778877655456777888888888887766333221 11 11222233332 1 0123445444445555433
Q ss_pred c--CccceeeeccCCcchHHHHHHHHHh--hcCCCCCCccccchHHHHHHHHHhCCh
Q 046316 689 G--GRQLMLVWGGDSGFTMRSLLDAASR--LLNPDLESSGSLFVGSYILQLILHLPS 741 (966)
Q Consensus 689 ~--~~~~~~~~~~~~~~~l~~il~i~~~--lL~~~~~~~~~~~vg~Lv~~li~~~~~ 741 (966)
+ |-+.|.+ ...+..+++++.. .+..-.....+..+|.-+..++++-+.
T Consensus 185 N~~Gl~~~~~-----~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~ 236 (379)
T PF06025_consen 185 NNRGLEKVKS-----SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS 236 (379)
T ss_pred CHHHHHHHHh-----cChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence 2 2222322 2455566666541 111001113344778888888877543
No 217
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.63 E-value=1.4e+02 Score=36.02 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=64.7
Q ss_pred CCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHH
Q 046316 460 VHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADL 539 (966)
Q Consensus 460 ~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~l 539 (966)
.+-+|++|+-+..++|-++..-.-...-. ++..|..|..--||-+|+.|+.-+.-- ..+.+-|....+-+.+.++
T Consensus 599 es~N~HVRyGaA~ALGIaCAGtG~~eAi~----lLepl~~D~~~fVRQgAlIa~amIm~Q-~t~~~~pkv~~frk~l~kv 673 (929)
T KOG2062|consen 599 ESYNPHVRYGAAMALGIACAGTGLKEAIN----LLEPLTSDPVDFVRQGALIALAMIMIQ-QTEQLCPKVNGFRKQLEKV 673 (929)
T ss_pred hhcChhhhhhHHHHHhhhhcCCCcHHHHH----HHhhhhcChHHHHHHHHHHHHHHHHHh-cccccCchHHHHHHHHHHH
Confidence 37889999999999999987643222222 334445565668999999999876533 2467889999999999999
Q ss_pred HhhcChhhHHHH
Q 046316 540 LHQARDETLHLV 551 (966)
Q Consensus 540 l~~~~~d~l~~~ 551 (966)
+.+-.+|.+...
T Consensus 674 I~dKhEd~~aK~ 685 (929)
T KOG2062|consen 674 INDKHEDGMAKF 685 (929)
T ss_pred hhhhhhHHHHHH
Confidence 999988876543
No 218
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=37.39 E-value=7e+02 Score=28.75 Aligned_cols=165 Identities=8% Similarity=0.027 Sum_probs=85.8
Q ss_pred CCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhcchhh-cccccchHHHHHH
Q 046316 502 PPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA-RDETLHLVLETLQAAIKAGFLTA-SMEPMISPLILNI 579 (966)
Q Consensus 502 ~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~-~~d~l~~~le~l~~~i~~~~~~~-~~~~~l~p~~l~l 579 (966)
+..+...|+..+..++.......-...++.+++-+...+... +.+....++.++......+.+.. -+....++.+..+
T Consensus 114 d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~ 193 (429)
T cd00256 114 DQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKL 193 (429)
T ss_pred chhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHH
Confidence 557777888888888765332222223333445555555432 34666677777777776654211 1122355777777
Q ss_pred HHhhcCChhHHHHHHHHHHHHHcCCCc-HHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcC-----ChhHHH
Q 046316 580 WALHVSDPFISIDAIEVLEAIKCSPGC-IHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSA-----STDVVK 653 (966)
Q Consensus 580 ~~~~~~d~~~~~~~~~~l~~l~~~~~~-~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~-----~~~l~~ 653 (966)
......+.++...+.=|+=-|+=.+.. -......++|.+..++.....+ -.+..++.++..++... ......
T Consensus 194 L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KE--KvvRv~l~~l~Nll~~~~~~~~~~~~~~ 271 (429)
T cd00256 194 LSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKE--KVIRIVLAIFRNLISKRVDREVKKTAAL 271 (429)
T ss_pred HhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhH--HHHHHHHHHHHHHhhcccccchhhhHHH
Confidence 443333444444444343333211111 1111246788888888754322 35567777777777643 122333
Q ss_pred HHHHHHhHHHHHHHh
Q 046316 654 AAYDVCFDAVIRIIL 668 (966)
Q Consensus 654 ~~~~~~fp~l~~~l~ 668 (966)
.++..=++++++.+.
T Consensus 272 ~mv~~~l~~~l~~L~ 286 (429)
T cd00256 272 QMVQCKVLKTLQSLE 286 (429)
T ss_pred HHHHcChHHHHHHHh
Confidence 444433456666655
No 219
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=37.15 E-value=1.5e+02 Score=26.53 Aligned_cols=63 Identities=13% Similarity=0.267 Sum_probs=46.7
Q ss_pred CcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhcc
Q 046316 605 GCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQS 670 (966)
Q Consensus 605 ~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s 670 (966)
+...++++.++..+...|..-. .+...+++.++..+++.+|..+....+..+++..+.++-.+
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~---~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHIS---PDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCC---HHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 3456777888888888887532 25678999999999999998744445667788888887643
No 220
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=36.65 E-value=30 Score=33.73 Aligned_cols=128 Identities=19% Similarity=0.287 Sum_probs=79.5
Q ss_pred HhhhcC-CCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhc-c-c
Q 046316 494 ITTIAM-DVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTAS-M-E 569 (966)
Q Consensus 494 ~~~L~~-~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~-~-~ 569 (966)
++.|.. .....+|..|.-++..+.+.. ++.....+. +-+-.++.+.+.|.+..++.++..++...+ .... + .
T Consensus 9 L~~L~~~~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~---~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~ 84 (157)
T PF11701_consen 9 LTSLDMLRQPEEVRSHALVILSKLLDAA-REEFKEKIS---DFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLS 84 (157)
T ss_dssp HHHHHCTTTSCCHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCT
T ss_pred HHHhcccCCCHhHHHHHHHHHHHHHHHh-HHHHHHHHH---HHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 344432 345678888888888886431 122222222 333344566666788888888888877655 2222 1 2
Q ss_pred ccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCC
Q 046316 570 PMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNP 625 (966)
Q Consensus 570 ~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~ 625 (966)
+.+.+.++.+..+..++..+...+.++|.+=+....|-..+....++.+.....++
T Consensus 85 eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~ 140 (157)
T PF11701_consen 85 EGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNS 140 (157)
T ss_dssp TTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTC
T ss_pred hhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccc
Confidence 45667777664435667777777778877766666677778888888888888644
No 221
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.56 E-value=6.2e+02 Score=27.58 Aligned_cols=132 Identities=11% Similarity=0.143 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHH
Q 046316 368 CRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGEL 447 (966)
Q Consensus 368 ~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~ 447 (966)
....+.+++..|+..-++..-..+-..|..++.+-. |. ..-.--||+..++-+...+.+. +.+.
T Consensus 104 ~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslK------Nl-RS~VsraA~~t~~difs~ln~~---------i~~~ 167 (334)
T KOG2933|consen 104 DKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLK------NL-RSAVSRAACMTLADIFSSLNNS---------IDQE 167 (334)
T ss_pred HHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc------Ch-HHHHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence 344567777777776554333333334444443321 11 1123344555555554443322 1222
Q ss_pred HHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 448 LEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 448 l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
+...+...+..+...+.|+|..|--.+-.......|. .+++.++.++.. ....+|..|+.++.++...
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~---~~L~~L~~~~~~-~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ---KLLRKLIPILQH-SNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH---HHHHHHHHHHhh-hchhhhhhhhcccccccee
Confidence 3333333344334678999999998888887776543 456666666553 3667888888777766644
No 222
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.48 E-value=1.9e+02 Score=31.67 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcChh----hHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHH-cCCCc
Q 046316 533 FSSLADLLHQARDE----TLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIK-CSPGC 606 (966)
Q Consensus 533 l~~L~~ll~~~~~d----~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~-~~~~~ 606 (966)
++.++.++.++.++ ....++..|..+-|.|. ...-....-.|.++.+..++..||.+...++-|+..|+ ..|+.
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Q ss_pred HHHHHH
Q 046316 607 IHQLAS 612 (966)
Q Consensus 607 ~~~l~~ 612 (966)
.....+
T Consensus 365 sa~~ie 370 (461)
T KOG4199|consen 365 SAKAIE 370 (461)
T ss_pred HHHHHh
No 223
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=34.64 E-value=2.4e+02 Score=34.39 Aligned_cols=175 Identities=17% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhh-cCCHHHHHHHhhCHHHHhhcccC-CccchhhHHHHHHHHHHHHhC
Q 046316 307 QLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFL-QMTEQQIHIWSIDANQFLADEDE-STYSCRVSGALLLEEVVSYCG 384 (966)
Q Consensus 307 ~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~-~lt~ed~e~w~~Dp~~fv~de~d-~~~s~R~aa~~lL~~L~~~~~ 384 (966)
.++.++...+..++....-... ++..+.... ..|++-++.+. +++....- ..-.+|.+|.--+..+...+-
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~---~l~~l~~~~~~Pt~e~l~~l~----~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQ---LLASLPFHVRRPTEELLKELF----ELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHH---HHHHHHHT-----HHHHHHHH----HHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHH---HHHHHHhhcCCCCHHHHHHHH----HHHhCccccCChhHHHHHHHHHHHHhCcee
Q ss_pred hh-------------hHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHH
Q 046316 385 RE-------------GIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQM 451 (966)
Q Consensus 385 ~~-------------~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~ 451 (966)
.. ....+..++.+.+..+.. ..+-..+-.+|.|||.++..- ....
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~LkaLgN~g~~~----------------~i~~ 525 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVS------RGDEEEKIVYLKALGNLGHPE----------------SIPV 525 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHT-GG----------------GHHH
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhh------ccCHHHHHHHHHHhhccCCch----------------hhHH
Q ss_pred HhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHH
Q 046316 452 ITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRAL 513 (966)
Q Consensus 452 i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al 513 (966)
+.+.+........++|..|+|.+.+++...+......+++...+. ..+..||++|+..|
T Consensus 526 l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~---~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 526 LLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNT---TEDPEVRIAAYLIL 584 (618)
T ss_dssp HHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-T---TS-HHHHHHHHHHH
T ss_pred HHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCC---CCChhHHHHHHHHH
No 224
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.06 E-value=7.4e+02 Score=31.67 Aligned_cols=96 Identities=19% Similarity=0.080 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhccCCC-C----ccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 046316 90 RKICTAISMAVASIAAYDWPE-D----WPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHT 164 (966)
Q Consensus 90 ~kIr~~~a~~Is~Ia~~D~P~-~----WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~ 164 (966)
++-|.-+|.+++.|.+. ||- + =++|+..-+..+++...+-...=.+.||..+-.+++..++.++=..-...|+.
T Consensus 571 ~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 58889999999999987 883 1 25788877777776324556667889999999999887776665666777888
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHHHH
Q 046316 165 IVSFPESYDRYVRTKALSIVYSCTA 189 (966)
Q Consensus 165 i~~~~~~~~~~~r~~al~i~~~~~~ 189 (966)
++.++ .+++|+.|+-.+.+.+.
T Consensus 650 ~LsD~---vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 650 LLSDP---VPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HhcCc---cHHHHHHHHHHHHHHhc
Confidence 88754 47899988877776554
No 225
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.05 E-value=26 Score=42.42 Aligned_cols=7 Identities=0% Similarity=-0.173 Sum_probs=3.5
Q ss_pred CchhHHH
Q 046316 932 PTYEHLE 938 (966)
Q Consensus 932 ~~~~~l~ 938 (966)
++|+.++
T Consensus 1469 ~df~~el 1475 (1516)
T KOG1832|consen 1469 GDFMEEL 1475 (1516)
T ss_pred hHHHHHH
Confidence 4455444
No 226
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=33.91 E-value=19 Score=31.10 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=2.2
Q ss_pred CCchhHHH
Q 046316 931 RPTYEHLE 938 (966)
Q Consensus 931 ~~~~~~l~ 938 (966)
+|.|-...
T Consensus 43 ~p~fgea~ 50 (101)
T PF09026_consen 43 VPEFGEAM 50 (101)
T ss_dssp ---HHHHH
T ss_pred chhHHHHH
Confidence 45554443
No 227
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=33.76 E-value=4.8e+02 Score=28.46 Aligned_cols=31 Identities=6% Similarity=0.111 Sum_probs=16.9
Q ss_pred HHhhcCChhHHHHHHHHHhHHHHHHHhccCc
Q 046316 642 MLLKSASTDVVKAAYDVCFDAVIRIILQSED 672 (966)
Q Consensus 642 ~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d 672 (966)
.+++..++.....+++.+.+.+..+..+...
T Consensus 207 ~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~G 237 (322)
T cd07920 207 HVLELGDPDDTSRIIEKLLGNIVQLSCHKFA 237 (322)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHcCcch
Confidence 3445555555555666666666666544333
No 228
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=33.47 E-value=2.6e+02 Score=25.47 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=44.4
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcc
Q 046316 80 LLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLD 147 (966)
Q Consensus 80 ~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~ 147 (966)
..|+.|..+...|++....|+...-.. +++...+.+.+... .+......|+++.+++..-.
T Consensus 4 ~~L~~L~~s~~~I~~lt~~~~~~~~~a------~~Iv~~i~~~~~~~-~~~~kL~~LYlindIl~n~~ 64 (121)
T smart00582 4 QKLESLNNSQESIQTLTKWAIEHASHA------KEIVELWEKYIKKA-PPPRKLPLLYLLDSIVQNSK 64 (121)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhC-CccceehhHHhHHHHHHHHh
Confidence 356666667788888888888765433 36888888888764 55677789999999988653
No 229
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=33.40 E-value=2.4e+02 Score=27.55 Aligned_cols=110 Identities=11% Similarity=0.077 Sum_probs=62.1
Q ss_pred HhhhhHHHHHHHHhcCccceeeeccCCcchH----HHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHH
Q 046316 675 EMQNATECLATFISGGRQLMLVWGGDSGFTM----RSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDL 750 (966)
Q Consensus 675 ~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l----~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~i 750 (966)
...-+.+.+.+.+..++..|.++... +..+ +.+...+.+.+.... -.-...+.+++..++.+++.++...++-+
T Consensus 38 ~k~l~LeLl~~iL~~~~~~f~~~~~~-~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 38 SKLLSLELLESILENHGSVFRSSEEH-PSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHhCHHHHhCCcch-HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777666531100 0111 222222333221111 22333566888888888887788888888
Q ss_pred HHHHHHHHHHhhhH--HHHHHHHHHHHHHHhhcCCCHHHHHH
Q 046316 751 VAALVRRLQSAQIA--GLRSSLLLIFARLVHMSAPNVEWFIN 790 (966)
Q Consensus 751 L~a~~~rL~~~~~~--~~~~~li~vfa~l~~~~~~~~~~~l~ 790 (966)
+..++.++...+.. ..+.-.+.++.++. . +|..+++
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~-~---~p~~l~~ 153 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELC-K---DPQFLVD 153 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHH-h---ChhHHHH
Confidence 99998887765552 32333444555544 4 6776666
No 230
>PLN03205 ATR interacting protein; Provisional
Probab=33.18 E-value=2.6e+02 Score=31.07 Aligned_cols=119 Identities=22% Similarity=0.227 Sum_probs=70.9
Q ss_pred ccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcc--ccchhh----hhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 046316 112 WPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLD--DAIVPK----LVPVLFPVLHTIVSFPESYDRYVRTKALSIVY 185 (966)
Q Consensus 112 WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~--~~~~~~----i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~ 185 (966)
-..|+..|+++-.- ++...|+++|++|+.+.+.+- ++.|.. ---.+|..+.++..... ...+|.-|+.|..
T Consensus 321 lqtLlEaLLdLC~v-~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~T--EE~VrLEAvSIMn 397 (652)
T PLN03205 321 LKSLVEPLLDLCKA-ETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRT--EEDVKLEALSIMN 397 (652)
T ss_pred HHHHHHHHHHHHhc-CchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccc--hhheeeehhhhhH
Confidence 45688888887765 477889999999999888752 234432 12346777777765432 2345655666555
Q ss_pred HHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHH
Q 046316 186 SCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFI 247 (966)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~ 247 (966)
-++. ......++..|-. .+.++.+.++|+... ...+++++++.|-.+.
T Consensus 398 VIlm-----ssna~~eREkFG~---~~VfESiaQLLkkEa------Gl~VqKealhLLfLLL 445 (652)
T PLN03205 398 IIVM-----STDAYTARESFVS---KEVFESISLLLRKEG------GLHVRKEAIHLFYLLL 445 (652)
T ss_pred Hhhh-----ccchhHHHHHhcc---hHHHHHHHHHHHHhc------cchhhHHHHHHHHHHH
Confidence 3321 1111122333322 245666777777632 2468888888776554
No 231
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=32.09 E-value=9.3e+02 Score=28.64 Aligned_cols=71 Identities=14% Similarity=0.028 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCC--C-CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhh
Q 046316 74 KEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWP--E-DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSAD 145 (966)
Q Consensus 74 K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P--~-~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~ 145 (966)
-+.+-..++.++.++++++|.-.+.+++.+...=-| + -...|+..|...+-+. .+....-|+.||..+-+.
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEM 162 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhc
Confidence 344555677888899999999999999998866544 2 2455666666666554 566778899999887754
No 232
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=32.04 E-value=2.2e+02 Score=33.31 Aligned_cols=84 Identities=17% Similarity=0.052 Sum_probs=52.2
Q ss_pred HHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeecc-CCcch-H------HHHHHHHHhhcCCCCCCccccchH
Q 046316 658 VCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGG-DSGFT-M------RSLLDAASRLLNPDLESSGSLFVG 729 (966)
Q Consensus 658 ~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~-~~~~~-l------~~il~i~~~lL~~~~~~~~~~~vg 729 (966)
.+.+.|+..+..+.+.++..+++++|+++|+.+...-..-.. -+++. + +.|-+++..+|+... .++..++.
T Consensus 62 ~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~-~s~lvn~v 140 (475)
T PF04499_consen 62 NLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG-GSSLVNGV 140 (475)
T ss_pred CHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC-cchHHHHH
Confidence 346777888876777888999999999999977654332111 11111 1 222233445564332 56666777
Q ss_pred HHHHHHHHhCChh
Q 046316 730 SYILQLILHLPSQ 742 (966)
Q Consensus 730 ~Lv~~li~~~~~~ 742 (966)
.++..+++|-...
T Consensus 141 ~IlieLIRknnsd 153 (475)
T PF04499_consen 141 SILIELIRKNNSD 153 (475)
T ss_pred HHHHHHHHhcccc
Confidence 8888888887543
No 233
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=31.96 E-value=21 Score=41.03 Aligned_cols=17 Identities=47% Similarity=0.880 Sum_probs=10.6
Q ss_pred CCCCCCCcccccccCCC
Q 046316 898 DDDEEDSDWEEVQEGDV 914 (966)
Q Consensus 898 ~~d~~~~dwe~~~~~~~ 914 (966)
||||||+||||..++.|
T Consensus 307 dDDDDssDWEDSveESG 323 (507)
T PF11702_consen 307 DDDDDSSDWEDSVEESG 323 (507)
T ss_pred cCCccchhhhhcccccc
Confidence 44555788987765443
No 234
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=31.72 E-value=1.5e+02 Score=25.59 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=34.2
Q ss_pred cCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHH
Q 046316 341 QMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASK 397 (966)
Q Consensus 341 ~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~ 397 (966)
++++++.|.-... +...+.+.+|..||..|.+..+...++.++.++..
T Consensus 31 ~L~~~~~e~I~a~---------~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~ 78 (88)
T cd08812 31 CLTDEDKEQILAE---------ERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRR 78 (88)
T ss_pred HcCHHHHHHHHHH---------HhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 6888877654321 23456788999999999986677778777766543
No 235
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=31.37 E-value=1.3e+02 Score=26.21 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCccchHHHHHH----Hhccc-CchhhHhHHHHHHHHHHhh
Q 046316 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLLK----LITDQ-SNMNGVHGGLRCLALLSAD 145 (966)
Q Consensus 88 ~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~----~l~s~-~~~~~~~~aL~~L~~l~~~ 145 (966)
.+-.+|..+|.+++.|++. |-+..|+|-+.+.. .+.++ .+....+||+..|..+-.+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred chHHHHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3568999999999999965 55556665555554 44433 2455789999999887544
No 236
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.95 E-value=2.6e+02 Score=35.34 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh----hHHHHHH
Q 046316 415 RMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD----GVLEHFL 490 (966)
Q Consensus 415 ~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~----~~~~~~l 490 (966)
..|--|-|.+.++..++.-.+.. -++ .+++. +-+..++ .+++|+||-=+|.++|++-+.++. .......
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~a---cl~-~~li~-iCle~ln--d~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKA---CLN-GNLIG-ICLEHLN--DDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHH---hcc-ccHHH-HHHHHhc--CCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 45555666676666543222111 011 11122 3333344 125899999999999999877653 2233455
Q ss_pred HHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 491 SAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 491 ~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
+.++..|. |+.+.||.+|+-||..|+..
T Consensus 645 ekL~~~Ls-D~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 645 EKLILLLS-DPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHHHhc-CccHHHHHHHHHHHHHHhcc
Confidence 66666665 55778999999999999985
No 237
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=29.60 E-value=1.1e+02 Score=36.21 Aligned_cols=135 Identities=15% Similarity=0.138 Sum_probs=84.4
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCC-CCCcEehhHHHHH---HhhcccCCCCCccccHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMD-VPPPVKVGACRAL---SELLPKANKGNFQPQMMGLFSSL 536 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~-~~~~Vr~~A~~al---~~~~~~~~~~~l~p~l~~il~~L 536 (966)
...+.+|.|.+-++.|=... ......+++.+..+|..+ ....+|..+..-+ ...+.+.....+...-+.|+..+
T Consensus 294 pa~~~lq~kIL~~L~kS~~A--a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g 371 (501)
T PF13001_consen 294 PASPRLQEKILSLLSKSVIA--ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQG 371 (501)
T ss_pred CCCHHHHHHHHHHHHHhHHH--HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcC
Confidence 46688999998888773222 112335566666666643 2467888888777 66665554555666666677888
Q ss_pred HHHHh--------hcChhhHHHHHHHHHHHHhhcc--hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046316 537 ADLLH--------QARDETLHLVLETLQAAIKAGF--LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIK 601 (966)
Q Consensus 537 ~~ll~--------~~~~d~l~~~le~l~~~i~~~~--~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~ 601 (966)
.++++ ..+.+.....-|+|..+.+..+ +...+ .++..+++-. ...++.++..+.++|.++.
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~--~li~~LF~sL--~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDL--SLIEFLFDSL--EDESPEVRVSIQEALSSLA 442 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccH--HHHHHHHHHh--hCcchHHHHHHHHHHHHHH
Confidence 88883 1223467788899999888766 22221 2233333331 3445678888888888776
No 238
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=28.85 E-value=1.1e+02 Score=37.16 Aligned_cols=221 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH-----hhcch
Q 046316 490 LSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAI-----KAGFL 564 (966)
Q Consensus 490 l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i-----~~~~~ 564 (966)
+..++..|... +..|+.-|+.+++..|-...+--.+-....=+..|..++..-..+....++-++...+ ..+..
T Consensus 235 lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Q ss_pred hhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHh
Q 046316 565 TASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLL 644 (966)
Q Consensus 565 ~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~ 644 (966)
+....+.+ |.++++ .+...|-.++..+.++|=.|.+...+-. ..+..+|..|+--+
T Consensus 314 ai~~~~Gv-~~l~~~-Lr~t~D~ev~e~iTg~LWNLSS~D~lK~----------------------~ii~~al~tLt~~v 369 (717)
T KOG1048|consen 314 AIKELNGV-PTLVRL-LRHTQDDEVRELITGILWNLSSNDALKM----------------------LIITSALSTLTDNV 369 (717)
T ss_pred hhhhcCCh-HHHHHH-HHhhcchHHHHHHHHHHhcccchhHHHH----------------------HHHHHHHHHHHHhh
Q ss_pred hcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCcc
Q 046316 645 KSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSG 724 (966)
Q Consensus 645 ~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~ 724 (966)
-.--.+.... |.- .+-.+.+++.+++.||+|.-+.+.+.--+-+.- ...++.++..+.........|+-
T Consensus 370 I~P~Sgw~~~------~~~----~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c-~GLIdaL~~~iq~~i~~~~~d~K 438 (717)
T KOG1048|consen 370 IIPHSGWEEE------PAP----RKAEDSTVFRNVTGCLRNLSSAGQEAREQMREC-DGLIDALLFSIQTAIQKSDLDSK 438 (717)
T ss_pred cccccccCCC------Ccc----cccccceeeehhhhhhccccchhHHHHHHHhhc-cchHHHHHHHHHHHHHhccccch
Q ss_pred ccchHHHHHHHHHhCChhhhHhHHH
Q 046316 725 SLFVGSYILQLILHLPSQMAQHIRD 749 (966)
Q Consensus 725 ~~~vg~Lv~~li~~~~~~l~~~l~~ 749 (966)
.+.-| ..+++|++-++...+|+
T Consensus 439 ~VENc---vCilRNLSYrl~~Evp~ 460 (717)
T KOG1048|consen 439 SVENC---VCILRNLSYRLEAEVPP 460 (717)
T ss_pred hHHHH---HHHHhhcCchhhhhcCH
No 239
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=28.64 E-value=1.2e+03 Score=28.95 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=64.4
Q ss_pred HHHHHHHHhh-----hchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhh---ccc
Q 046316 77 IRKLLLSSLD-----DTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSAD---LDD 148 (966)
Q Consensus 77 IR~~Ll~~L~-----~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~---l~~ 148 (966)
+--.+..+|. ..++.+|...-+++..+-.....--+.+++|-++.++-++ ++....=|-..+..+-.. ++.
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~-~~~~r~WA~~~~~~l~~~~~~~t~ 156 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPLKLPKELLPGMTYFLFDG-NPERRRWAERWWQRLKRPPYSITD 156 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCccccccccchhhhhhhcC-CHHHHHHHHHHHHHcCCCccCCch
Confidence 3444455553 3456688889999998886654444588999999999885 888888888888888764 566
Q ss_pred cchh-hhhhhHHHHHHHH
Q 046316 149 AIVP-KLVPVLFPVLHTI 165 (966)
Q Consensus 149 ~~~~-~i~~~l~p~L~~i 165 (966)
+.|. .+...+..+++.+
T Consensus 157 ~~~~~av~~~l~~~l~~i 174 (727)
T PF12726_consen 157 EEFDWAVLDELSSHLYRI 174 (727)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 6774 5677788888888
No 240
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.99 E-value=3.9e+02 Score=29.03 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=62.4
Q ss_pred chhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHH
Q 046316 412 VWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLS 491 (966)
Q Consensus 412 ~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~ 491 (966)
++|..+=-+|..+..++.. +. + .+...|..+|+..++...+...=+-..||.+++...+.++.. ..+-+.
T Consensus 100 ~dW~~~vdgLn~irrLs~f-h~--e------~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i~~~ld 169 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEF-HP--E------SLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-IDQELD 169 (334)
T ss_pred HHHHHHhhhHHHHHHHHhh-hH--H------HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4688888888888888763 21 1 133344444444433222555667788899999888776533 223455
Q ss_pred HHHhhhc---CCCCCcEehhHHHHHHhhcccC
Q 046316 492 AAITTIA---MDVPPPVKVGACRALSELLPKA 520 (966)
Q Consensus 492 ~~~~~L~---~~~~~~Vr~~A~~al~~~~~~~ 520 (966)
.++..|. .+.+--||..|-+||.....+.
T Consensus 170 ~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 170 DLVTQLLHKASQDNRFVREDAEKALVAMVNHV 201 (334)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHhcc
Confidence 5555553 2335678999999999888763
No 241
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.85 E-value=1.4e+03 Score=29.43 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=55.8
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC-CCCCccccHHHHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFSSLADL 539 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~l 539 (966)
+..|-+|+-|..-+|-|....|.-++..-|=.-+.-.-+|.+.-||..+.+||..+.+.. ....++-+...+=..+..+
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeM 377 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEM 377 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 677899999999999999888765555544444555456778899999999999998762 2233444444444444555
Q ss_pred H
Q 046316 540 L 540 (966)
Q Consensus 540 l 540 (966)
.
T Consensus 378 a 378 (1048)
T KOG2011|consen 378 A 378 (1048)
T ss_pred H
Confidence 4
No 242
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=27.48 E-value=8.3e+02 Score=28.24 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcC-CCCCChhHHHHHHHHHHHhhhh--c---ChhHH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGT-GVHQYPFLYARIFASVARFSSA--I---SDGVL 486 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~-~~~~~~~Lr~Ra~~~l~~f~~~--~---~~~~~ 486 (966)
.-|.|.-+..++|.+...+..-.. -.+...++.-+...... .....--+|--||.++|...++ + +....
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~-----~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA 571 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEK-----PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWA 571 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhh-----ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCch
Confidence 468888899999998765432211 11222222222221110 1134456889999999999875 2 22456
Q ss_pred HHHHHHHHhhhcCCCCCcEehhHHHHHHh
Q 046316 487 EHFLSAAITTIAMDVPPPVKVGACRALSE 515 (966)
Q Consensus 487 ~~~l~~~~~~L~~~~~~~Vr~~A~~al~~ 515 (966)
.+.|..+...+.+-.+.-||+.|+.||..
T Consensus 572 ~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 572 SQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred HHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 67777777776655688999999999864
No 243
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=27.45 E-value=97 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=23.6
Q ss_pred HhHHHHHHHhccCchHHhhhhHHHHHHHH
Q 046316 659 CFDAVIRIILQSEDHSEMQNATECLATFI 687 (966)
Q Consensus 659 ~fp~l~~~l~~s~d~~~lq~~~~~l~~~i 687 (966)
++|+|++++. +.+.++...+..+|.++-
T Consensus 13 ~i~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 4788899875 788999999999998874
No 244
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=26.77 E-value=1.3e+02 Score=29.61 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhccCCCCc-----cchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcc
Q 046316 95 AISMAVASIAAYDWPEDW-----PDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLD 147 (966)
Q Consensus 95 ~~a~~Is~Ia~~D~P~~W-----P~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~ 147 (966)
.++.+++.+....=|+.| +++||.+..+|+|. .+..+..||.+|..+++.+.
T Consensus 45 vlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk-~E~~i~~aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 45 VLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSK-YESYISVALEMLRSILKKFG 101 (164)
T ss_pred HHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHH
Confidence 456677777766667778 58999999999985 78899999999999988653
No 245
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=26.75 E-value=8.7e+02 Score=30.55 Aligned_cols=179 Identities=17% Similarity=0.141 Sum_probs=97.6
Q ss_pred CCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHH
Q 046316 502 PPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARD-ETLHLVLETLQAAIKAGF-LTASMEPMISPLILNI 579 (966)
Q Consensus 502 ~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~-d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l 579 (966)
.-.=|..|...+...++... ...++....++..++.......+ -.....+..|..+..... ....|...+.|.++.-
T Consensus 266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~ 344 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDR 344 (815)
T ss_pred chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHH
Confidence 34556777777777776643 22333333344444444333222 334444555554443322 1112222333544443
Q ss_pred HHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCC-hhHHHHHHHH
Q 046316 580 WALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAS-TDVVKAAYDV 658 (966)
Q Consensus 580 ~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~-~~l~~~~~~~ 658 (966)
+ ..+-+.++..+.+|+.++++. .-.....+.+...+.+..+ ..-..+..++...++..+ .......+..
T Consensus 345 l--kekk~~l~d~l~~~~d~~~ns-----~~l~~~~~~I~e~lk~knp---~~k~~~~~~l~r~~~~~~~~~~~~~t~~~ 414 (815)
T KOG1820|consen 345 L--KEKKSELRDALLKALDAILNS-----TPLSKMSEAILEALKGKNP---QIKGECLLLLDRKLRKLGPKTVEKETVKT 414 (815)
T ss_pred h--hhccHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHHHhhcCCcCcchhhHHH
Confidence 2 123356777777888777762 1234666777777765433 233455666777776655 3333334566
Q ss_pred HhHHHHHHHhccCchHHhhhhHHHHHHHHhcCcc
Q 046316 659 CFDAVIRIILQSEDHSEMQNATECLATFISGGRQ 692 (966)
Q Consensus 659 ~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~ 692 (966)
+.|+++.... ..+.+|...+.+++...+..-++
T Consensus 415 l~p~~~~~~~-D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 415 LVPHLIKHIN-DTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HhHHHhhhcc-CCcHHHHHHHHHHHHHHHHHhhH
Confidence 6777777653 55788999999998887775443
No 246
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.72 E-value=1.1e+03 Score=27.78 Aligned_cols=139 Identities=17% Similarity=0.098 Sum_probs=68.6
Q ss_pred chhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhc----cCchHHhhhhHHHHHHHHhcCccceeeeccCCcchH
Q 046316 630 DGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQ----SEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTM 705 (966)
Q Consensus 630 ~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~----s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l 705 (966)
..++..-.++++++.+..|..+++ +..+++..+.+++-- +.....++...+.+-.|-+-+...=. +.+ ...+
T Consensus 571 P~lc~~~~~lIty~ce~~pe~la~-~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspankgrc--Tqn-lafL 646 (748)
T KOG4541|consen 571 PKLCFDDVDLITYMCERAPEALAS-YHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANKGRC--TQN-LAFL 646 (748)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhh-hhHHHHHHHHHhhccCCccccchHhhccChHhhhccccccccccc--ccc-HHHH
Confidence 345667788999999998877776 467788888877652 12234455555554444322111100 000 0111
Q ss_pred --HHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhh
Q 046316 706 --RSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQ-IAGLRSSLLLIFARLVHM 780 (966)
Q Consensus 706 --~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~-~~~~~~~li~vfa~l~~~ 780 (966)
+.+-.++..+|..+.+.+--..+|.-+-.+|.-=++ .... .+.-|.+.+ .+.++|-|--.|-.|.-.
T Consensus 647 ~~efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~----~y~e----lvneL~skq~np~~~qrLa~Af~~Lt~s 716 (748)
T KOG4541|consen 647 SREFLRTVFHFLLFEDYSTDLVSTAADALYPLILCEPN----LYQE----LVNELISKQANPNFKQRLANAFQVLTTS 716 (748)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHH----HHHH----HHHHHHhhccChHHHHHHHHHHHHHhcc
Confidence 122223444454443322222344444444432222 2222 233333333 477888777777666655
No 247
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.68 E-value=3.3e+02 Score=32.90 Aligned_cols=85 Identities=19% Similarity=0.332 Sum_probs=61.5
Q ss_pred CCChhHHHHHH----HHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHH
Q 046316 461 HQYPFLYARIF----ASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSL 536 (966)
Q Consensus 461 ~~~~~Lr~Ra~----~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L 536 (966)
++.|.+|+.|. .+++.|=+.+|+.....++..++.-+.-|...-||.+-+..|..++... .=-|.+..++..+
T Consensus 231 d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np---~sh~~le~~Lpal 307 (1005)
T KOG1949|consen 231 DPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP---LSHPLLEQLLPAL 307 (1005)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc---cchhHHHHHHHhc
Confidence 89999999876 4566666668988899999999888887767799999999998887652 1124444555555
Q ss_pred HHHHhhcChhhH
Q 046316 537 ADLLHQARDETL 548 (966)
Q Consensus 537 ~~ll~~~~~d~l 548 (966)
-..+.+..+.+.
T Consensus 308 ~~~l~D~se~VR 319 (1005)
T KOG1949|consen 308 RYSLHDNSEKVR 319 (1005)
T ss_pred chhhhccchhHH
Confidence 556655555443
No 248
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=25.99 E-value=2.8e+02 Score=29.26 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=54.8
Q ss_pred HhhhcchHhhhcCCCCCCchhhHH-HHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchH-HhhhhHHHHHHHHhc
Q 046316 612 SRILPYVGPILNNPQQQPDGLVAG-SLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHS-EMQNATECLATFISG 689 (966)
Q Consensus 612 ~~~lP~l~~~l~~~~~~~~~~~~~-al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~-~lq~~~~~l~~~i~~ 689 (966)
++++|.+...+..+......+..+ .-+-+..++.....+= ...+.+++...+-.+ +.-.++.+|......
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~--------~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~ 143 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGD--------IEPLKELIEDPDADEYVRMAAISALAFLVHE 143 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCC--------HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHc
Confidence 577888888887654321111111 1222222222211111 123355555443333 345555666666555
Q ss_pred CccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHH
Q 046316 690 GRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIR 748 (966)
Q Consensus 690 ~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~ 748 (966)
|+. .-+.+++.+..++......+.....|.|+..++.-.+.++.|.+.
T Consensus 144 ~~~-----------~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~ 191 (249)
T PF06685_consen 144 GPI-----------SREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIR 191 (249)
T ss_pred CCC-----------CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHH
Confidence 432 233444444444433222223336788888887666555444433
No 249
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.75 E-value=1.3e+03 Score=28.23 Aligned_cols=125 Identities=17% Similarity=0.096 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC---CC
Q 046316 529 MMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS---PG 605 (966)
Q Consensus 529 l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~---~~ 605 (966)
+..-+..|.+++..-|.....+.+|+++..+...+.....-.. ...++.. .+...|--+|-.+.++|-.+|.. ..
T Consensus 327 l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~s-LkterDvSirrravDLLY~mcD~~Nak~ 404 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINS-LKTERDVSIRRRAVDLLYAMCDVSNAKQ 404 (938)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHH-hccccchHHHHHHHHHHHHHhchhhHHH
Confidence 4455667777777777777788888888877654311000011 1223333 33466777888888888888732 11
Q ss_pred ---cHHHHHHhhhcchHh-------hhc-CCCCCCchhhHHHHHHHHHHhhcCChhHHHHH
Q 046316 606 ---CIHQLASRILPYVGP-------ILN-NPQQQPDGLVAGSLDLLTMLLKSASTDVVKAA 655 (966)
Q Consensus 606 ---~~~~l~~~~lP~l~~-------~l~-~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~ 655 (966)
...++.+..=|.+.. |+. ...++...+++..|+++..--...+.+.|..+
T Consensus 405 IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~Rv 465 (938)
T KOG1077|consen 405 IVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRV 465 (938)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHh
Confidence 233333443343322 232 33455678889999988887777777888764
No 250
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=25.64 E-value=1.3e+03 Score=28.16 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHHHHHhhhhc--ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhc
Q 046316 461 HQYPFLYARIFASVARFSSAI--SDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELL 517 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~--~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~ 517 (966)
+.+|+.|..|+.++.+....- .+.-...+...++.+++ |.+..||--|++-+..++
T Consensus 357 D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lq-Drss~VRrnaikl~SkLL 414 (1128)
T COG5098 357 DTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQ-DRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred ccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 678888888888888877642 23345567777788876 556788888877776665
No 251
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.11 E-value=1.8e+03 Score=29.60 Aligned_cols=78 Identities=10% Similarity=0.190 Sum_probs=57.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcc
Q 046316 172 YDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFP 251 (966)
Q Consensus 172 ~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~ 251 (966)
.+..+|.+|++=+...++.. . . +.....++.|...+.+++.. .+-.+|....+.+..+.+.-.
T Consensus 53 kD~~TK~KaL~eL~eli~~~-------~--~-e~~~~il~~w~~i~~kl~~d-------~~~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 53 RDETTKIKALQELSELIDTS-------D--T-EELKGILPEWLVIYAKLIID-------EDRTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred cChHHHHHHHHhHHHhcccc-------c--c-hHHhhhHHHHHHHHHHHhcC-------ccHHHHHHHHHHHHHHHHHHH
Confidence 46778888887666544421 1 1 11223789999999999865 345799999999999999999
Q ss_pred hhhHHhhHHHHHHHH
Q 046316 252 SLAESEFLVVVRSLW 266 (966)
Q Consensus 252 ~~~~~~~~~~~~~~~ 266 (966)
|.+.|+++.++++.|
T Consensus 116 k~lsp~LK~li~~wl 130 (1312)
T KOG0803|consen 116 KKLSPFLKSLIPPWL 130 (1312)
T ss_pred HHhhHHHHhhhhhhh
Confidence 999999988877543
No 252
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=24.88 E-value=4.2e+02 Score=24.18 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=48.8
Q ss_pred HHHHHHHhhhcCCC-CCcEehhHHHHHHhhcccCC--CCCccccHHHHHHHHHHHHhhcChhhH-HHHHHHHHHHHhhcc
Q 046316 488 HFLSAAITTIAMDV-PPPVKVGACRALSELLPKAN--KGNFQPQMMGLFSSLADLLHQARDETL-HLVLETLQAAIKAGF 563 (966)
Q Consensus 488 ~~l~~~~~~L~~~~-~~~Vr~~A~~al~~~~~~~~--~~~l~p~l~~il~~L~~ll~~~~~d~l-~~~le~l~~~i~~~~ 563 (966)
.|+..++..|..+. +..-...|.++...+++... ...+..+...+++.|+.+-+..+.+.. ..-.++++.++-..|
T Consensus 3 vYlrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P 82 (114)
T PF10193_consen 3 VYLRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAP 82 (114)
T ss_dssp --HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSG
T ss_pred chHHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhh
Confidence 46677777777443 44445568888888887632 357889999999999999998876543 344566666654443
Q ss_pred hhhcccccchHHHHHHH
Q 046316 564 LTASMEPMISPLILNIW 580 (966)
Q Consensus 564 ~~~~~~~~l~p~~l~l~ 580 (966)
.++.|++.+.+
T Consensus 83 ------~~~~~~L~~~f 93 (114)
T PF10193_consen 83 ------EKVAPYLTEEF 93 (114)
T ss_dssp ------GGHHH-HHHHH
T ss_pred ------HHHHHHHHHHH
Confidence 24567666653
No 253
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=24.87 E-value=1.1e+03 Score=27.33 Aligned_cols=293 Identities=13% Similarity=0.116 Sum_probs=143.9
Q ss_pred chhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHH
Q 046316 367 SCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGE 446 (966)
Q Consensus 367 s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~ 446 (966)
+-|..|..=|....++|+-..++.++..+..++... . .-..|.+++.++-.+... ... .....=..
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~-------~--p~e~R~~~~~ll~~~i~~----~~~-~~~~~R~~ 70 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPN-------Q--PSEARRAALELLIACIKR----QDS-SSGLMRAE 70 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCC-------C--CHHHHHHHHHHHHHHHHc----ccc-ccHHHHHH
Confidence 347777777777778888777888888888877541 1 235688888877766542 110 00111112
Q ss_pred HHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC---h---hHHHHHHHHHHhhhc-------CCCCCc--------E
Q 046316 447 LLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS---D---GVLEHFLSAAITTIA-------MDVPPP--------V 505 (966)
Q Consensus 447 ~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~---~---~~~~~~l~~~~~~L~-------~~~~~~--------V 505 (966)
|+..+-.+ ..++.--+|-.|+..+.+=...+. . .++...+..+.+... .....+ .
T Consensus 71 fF~~I~~~----~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 146 (464)
T PF11864_consen 71 FFRDISDP----SNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDN 146 (464)
T ss_pred HHHHHhcC----CCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 23322111 112333566677777665544432 1 233333333331111 000000 0
Q ss_pred ehhHHHHHHhhcccC---CCCCcc-ccHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhcchhhcccccchHHHHHHH
Q 046316 506 KVGACRALSELLPKA---NKGNFQ-PQMMGLFSSLADLLHQARD-ETLHLVLETLQAAIKAGFLTASMEPMISPLILNIW 580 (966)
Q Consensus 506 r~~A~~al~~~~~~~---~~~~l~-p~l~~il~~L~~ll~~~~~-d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~ 580 (966)
.......+-.|+.+. +...+. ..+..+++.++.+-..... +.+..+++.+-.++.... .|. ..+ +.++++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~-iP~--~sl-~~~i~vL 222 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD-IPS--ESL-SPCIEVL 222 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc-CCh--HHH-HHHHHHH
Confidence 111222222222221 223333 5677777777777544443 455666666666655422 000 123 3344444
Q ss_pred HhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCCC---CCchhhHHHHHHHHHHhhcCC-hhHHHHHH
Q 046316 581 ALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQ---QPDGLVAGSLDLLTMLLKSAS-TDVVKAAY 656 (966)
Q Consensus 581 ~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~---~~~~~~~~al~ll~~l~~~~~-~~l~~~~~ 656 (966)
+.-.+-.-+...+..++..|+++.-. ...+-.+..+|.++.. .....+..|+.++..++-+.+ ..++..-+
T Consensus 223 Csi~~~~~l~~~~w~~m~nL~~S~~g-----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~ 297 (464)
T PF11864_consen 223 CSIVNSVSLCKPSWRTMRNLLKSHLG-----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF 297 (464)
T ss_pred hhHhcccccchhHHHHHHHHHcCccH-----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence 54443334555677788888865322 2333444555532221 123567799999999986652 23333212
Q ss_pred H--HHhHHHHHHHhccCchHHhhhhHHHHHHHH
Q 046316 657 D--VCFDAVIRIILQSEDHSEMQNATECLATFI 687 (966)
Q Consensus 657 ~--~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i 687 (966)
. .++|.+...+.... .-+--+...++.+++
T Consensus 298 ~~~~vl~sl~~al~~~~-~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 298 SPSSVLPSLLNALKSNS-PRVDYEILLLINRLL 329 (464)
T ss_pred cHHHHHHHHHHHHhCCC-CeehHHHHHHHHHHH
Confidence 2 25777777765332 222223445555555
No 254
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=24.85 E-value=4.8e+02 Score=24.83 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=47.9
Q ss_pred chHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhh-hhHHHHHHHHhcCC---CCCcHHHHHHHHHHHHHHHH
Q 046316 114 DLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLV-PVLFPVLHTIVSFP---ESYDRYVRTKALSIVYSCTA 189 (966)
Q Consensus 114 ~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~-~~l~p~L~~i~~~~---~~~~~~~r~~al~i~~~~~~ 189 (966)
+-+..|...|+++ +++....||.+|..+++.=....-..|+ ...+..|.+++... ......+|.+++.++.+-..
T Consensus 38 ~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677788888875 8888889999998888865442213333 45566777777531 11345676666665555443
No 255
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=24.76 E-value=7.9e+02 Score=29.04 Aligned_cols=204 Identities=20% Similarity=0.235 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc-HHHHHHHHhhhccccc-cccccCCCCChHHHHHHHHHHHHHhhhc
Q 046316 11 DQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP-AAVLLKHFIKKHWQEG-EESFELPAVSSEEKEVIRKLLLSSLDDT 88 (966)
Q Consensus 11 ~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p-A~i~LKn~I~~~W~~~-~~~~~~~~i~~~~K~~IR~~Ll~~L~~~ 88 (966)
+.+.+.-.|.++-+++.++-..||..||.....= -.-..++.+.-|-..+ ....+-++. +..+|..+++.|..+
T Consensus 235 d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa----~~~lq~kIL~~L~kS 310 (501)
T PF13001_consen 235 DEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPA----SPRLQEKILSLLSKS 310 (501)
T ss_pred cHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCC----CHHHHHHHHHHHHHh
Confidence 4466777788888889999999999999876541 0011111111111011 111111222 345666666666432
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccC-chhhHhHHHHHH---HHHHhhccccchhhhhhhHHHHHHH
Q 046316 89 HRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQS-NMNGVHGGLRCL---ALLSADLDDAIVPKLVPVLFPVLHT 164 (966)
Q Consensus 89 ~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~-~~~~~~~aL~~L---~~l~~~l~~~~~~~i~~~l~p~L~~ 164 (966)
.+|...+ |+.+..+...+.+.+ +......||+.. ...++......+..+.+.++..+..
T Consensus 311 -------------~~Aa~~~----~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p 373 (501)
T PF13001_consen 311 -------------VIAATSF----PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWP 373 (501)
T ss_pred -------------HHHHhCC----ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcc
Confidence 2333343 456777777776531 233455677777 7777777776777777778877777
Q ss_pred Hhc-----CCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHH
Q 046316 165 IVS-----FPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEV 239 (966)
Q Consensus 165 i~~-----~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~ 239 (966)
.++ .....+...|..+ | .++..|. .- .+..+..-+. .++.+...|+. +.-.++..|
T Consensus 374 ~~~~~~~~~~~~~~~~lR~~a---Y-e~lG~L~---~~----~p~l~~~d~~-li~~LF~sL~~-------~~~evr~sI 434 (501)
T PF13001_consen 374 LIQDSSSQSNSSEDIELRSLA---Y-ETLGLLA---KR----APSLFSKDLS-LIEFLFDSLED-------ESPEVRVSI 434 (501)
T ss_pred ccccccccCCCcccHHHHHHH---H-HHHHHHH---cc----CcccccccHH-HHHHHHHHhhC-------cchHHHHHH
Confidence 773 1111345556544 2 2222221 11 1222211122 22333333333 123488889
Q ss_pred HHHHHHHHHhcchhh
Q 046316 240 LKCLNQFIQNFPSLA 254 (966)
Q Consensus 240 ~~~L~~l~~~f~~~~ 254 (966)
-++|..+...|...-
T Consensus 435 qeALssl~~af~~~~ 449 (501)
T PF13001_consen 435 QEALSSLAPAFKDLP 449 (501)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998887643
No 256
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=24.60 E-value=5.4e+02 Score=25.72 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=53.2
Q ss_pred hhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCCh
Q 046316 153 KLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDD 232 (966)
Q Consensus 153 ~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~ 232 (966)
.++...++.++++..+.+ ..+|..|++++..++.. +.+ ++. + . ++.++.+ +. | .+
T Consensus 4 ~l~Qryl~~Il~~~~~~~---~~vr~~Al~~l~~il~q-GLv---nP~---~----c----vp~lIAL-~t-----s-~~ 58 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSD---DSVRLAALQVLELILRQ-GLV---NPK---Q----C----VPTLIAL-ET-----S-PN 58 (187)
T ss_pred HHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHhc-CCC---ChH---H----H----HhHhhhh-hC-----C-CC
Confidence 356667788888776553 67888899988887764 111 111 1 1 1222333 22 1 22
Q ss_pred hhHHHHHHHHHHHHHHhcchhhHHhhHH
Q 046316 233 WGVKMEVLKCLNQFIQNFPSLAESEFLV 260 (966)
Q Consensus 233 ~~lk~~~~~~L~~l~~~f~~~~~~~~~~ 260 (966)
-.++..+.+.+..+.++|+..+.....+
T Consensus 59 ~~ir~~A~~~l~~l~eK~~s~v~~~~~~ 86 (187)
T PF12830_consen 59 PSIRSRAYQLLKELHEKHESLVESRYSE 86 (187)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3699999999999999999977655443
No 257
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=23.75 E-value=1.1e+02 Score=21.37 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=19.3
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHH
Q 046316 81 LLSSLDDTHRKICTAISMAVASIA 104 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is~Ia 104 (966)
|+++|.+++..++.+++.++..|+
T Consensus 17 L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 17 LVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHc
Confidence 555566778999999999998886
No 258
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=23.46 E-value=3.7e+02 Score=30.80 Aligned_cols=86 Identities=22% Similarity=0.256 Sum_probs=59.9
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhh
Q 046316 78 RKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPV 157 (966)
Q Consensus 78 R~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~ 157 (966)
-+.|+..|.+++..+|..++.+++.| .+|...+.|...+.+. ++....+++..+.... ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i-------~~~~a~~~L~~~L~~~-~p~vR~aal~al~~r~------------~~ 147 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL-------GGRQAEPWLEPLLAAS-EPPGRAIGLAALGAHR------------HD 147 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC-------CchHHHHHHHHHhcCC-ChHHHHHHHHHHHhhc------------cC
Confidence 56788888888888999999999864 3677888888889774 7776667776654411 12
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 046316 158 LFPVLHTIVSFPESYDRYVRTKALSIVYS 186 (966)
Q Consensus 158 l~p~L~~i~~~~~~~~~~~r~~al~i~~~ 186 (966)
-.+.+...+++ .++.+|..|+.++..
T Consensus 148 ~~~~L~~~L~d---~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 148 PGPALEAALTH---EDALVRAAALRALGE 173 (410)
T ss_pred hHHHHHHHhcC---CCHHHHHHHHHHHHh
Confidence 23455566653 356788877776553
No 259
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=23.16 E-value=50 Score=41.39 Aligned_cols=9 Identities=0% Similarity=0.054 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 046316 705 MRSLLDAAS 713 (966)
Q Consensus 705 l~~il~i~~ 713 (966)
++.+.+++.
T Consensus 1532 ~qat~qVFh 1540 (3015)
T KOG0943|consen 1532 LQATAQVFH 1540 (3015)
T ss_pred HHHHHHHHh
Confidence 333333333
No 260
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=22.55 E-value=6e+02 Score=29.32 Aligned_cols=130 Identities=11% Similarity=0.184 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhc---CCCCCChhHHHHHHHHHHHhhhhcC---hhHHH
Q 046316 414 WRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIG---TGVHQYPFLYARIFASVARFSSAIS---DGVLE 487 (966)
Q Consensus 414 w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~---~~~~~~~~Lr~Ra~~~l~~f~~~~~---~~~~~ 487 (966)
...|+-+..++|.+.+.+.++..... .+ -+.+..-.+....+ ......--+++||.-.+|.....+. +-.+.
T Consensus 447 ln~r~KaawtlgnITdAL~~~~Ps~~-s~-~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~ 524 (728)
T KOG4535|consen 447 LNVRAKAAWSLGNITDALIVNMPTPD-SF-QERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFA 524 (728)
T ss_pred HhHHHHHHHHhhhhHHHHHcCCCCch-HH-HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHH
Confidence 34566677789999888765432100 01 12222111111111 1123456789998888887766543 22344
Q ss_pred HHHHHHHhhhcC----CCCCcEehhHHHHHHhhcccC-CCCCccccHHHHHHHHHHHHhhcCh
Q 046316 488 HFLSAAITTIAM----DVPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFSSLADLLHQARD 545 (966)
Q Consensus 488 ~~l~~~~~~L~~----~~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~ 545 (966)
...+..+..+.. ....+||=-||.|+.+++.+. .+-.-.|..+.++..|+.++.++.+
T Consensus 525 e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~N 587 (728)
T KOG4535|consen 525 EIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKN 587 (728)
T ss_pred HHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhcc
Confidence 445544444432 346789999999999999873 2223357778888888888876654
No 261
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=22.28 E-value=3.6e+02 Score=26.60 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=58.1
Q ss_pred hhhhhHHHHHHHHhcCC---------------CCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHH
Q 046316 153 KLVPVLFPVLHTIVSFP---------------ESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHF 217 (966)
Q Consensus 153 ~i~~~l~p~L~~i~~~~---------------~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~ 217 (966)
++.+.++|.++.-..-. ...+.++|+.|...+++++... .+.-+. ..+++..
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~-----~~~~~~--------~~~~~~v 71 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTC-----LSRIDI--------SEFLDRV 71 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHST-----CSSS-H--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHH-----HHhCCH--------HHHHHHH
Confidence 34567777777544311 0135789998988888777621 111111 1222222
Q ss_pred HHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHH
Q 046316 218 SIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVS 271 (966)
Q Consensus 218 ~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~ 271 (966)
..-|. ++..+|.-++-++.++....|..+.+.+..+..++-.++..
T Consensus 72 ~~GL~--------D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 72 EAGLK--------DEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHTTS--------S-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HhhcC--------CcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 22221 35679999999999999999988887777777766666553
No 262
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=22.27 E-value=82 Score=23.49 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.0
Q ss_pred cccCCCCChHHHHHHHHHHHH
Q 046316 63 SFELPAVSSEEKEVIRKLLLS 83 (966)
Q Consensus 63 ~~~~~~i~~~~K~~IR~~Ll~ 83 (966)
||.|-++++++|..||..+-.
T Consensus 25 Sf~GrPltdevK~a~k~i~~~ 45 (49)
T PF06543_consen 25 SFDGRPLTDEVKEAMKLIFGK 45 (49)
T ss_pred eeCCeeCCHHHHHHHHHHHhh
Confidence 566779999999999986643
No 263
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=22.12 E-value=1.2e+03 Score=26.64 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhh-------cChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc-
Q 046316 448 LEQMITEDIGTGVHQYPFLYARIFASVARFSSA-------ISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK- 519 (966)
Q Consensus 448 l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~-------~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~- 519 (966)
+-+.+..-+. |...=+.-.+..++|.|+.. +.......++..+.+.=.-+++..++-+++.|+++|.=-
T Consensus 316 ~l~~~~sw~~---S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 316 FLDFLESWFR---SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred HHHHHHHHhc---CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Q ss_pred CCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHH--HHhhcCChhHHHHHHHH
Q 046316 520 ANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNI--WALHVSDPFISIDAIEV 596 (966)
Q Consensus 520 ~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l--~~~~~~d~~~~~~~~~~ 596 (966)
.++..+.| ..+.+.++..+.-.........+-|++..+...+ .+..+...- ..+-++ |+++..-.-+...+..+
T Consensus 393 ~nka~~~~--aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~-~l~ekLv~Wsks~D~aGv~gESnRl 469 (604)
T KOG4500|consen 393 SNKAHFAP--AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNP-ELFEKLVDWSKSPDFAGVAGESNRL 469 (604)
T ss_pred Cchhhccc--cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCH-HHHHHHHHhhhCCccchhhhhhhHH
Q ss_pred HHHHH
Q 046316 597 LEAIK 601 (966)
Q Consensus 597 l~~l~ 601 (966)
+..+.
T Consensus 470 l~~lI 474 (604)
T KOG4500|consen 470 LLGLI 474 (604)
T ss_pred HHHHH
No 264
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=21.54 E-value=1.8e+02 Score=34.11 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh---hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 445 GELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD---GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 445 ~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~---~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
.+++. +++..+. +...-+|.|+|..+......+.+ ....-++..+.+.+- |....||..|+.+|..|-+.
T Consensus 90 ~~~~~-h~lRg~e---skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 90 AGTFY-HLLRGTE---SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred HHHHH-HHHhccc---CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhc
Confidence 34444 4444443 67788999999999999887542 344444444444444 45778999999999988765
No 265
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=21.35 E-value=1.5e+03 Score=27.38 Aligned_cols=78 Identities=10% Similarity=0.153 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhc-ChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHh
Q 046316 305 VIQLFEFLLTIVG-SAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYC 383 (966)
Q Consensus 305 ~~~~~efl~~~~~-~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~ 383 (966)
.+++++||..+++ .......++|.+..+++.++..+++-. +.-.|=.|--+...|..|+..-
T Consensus 397 fi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLip-----------------T~qy~PLRlhcir~Li~Ls~ss 459 (661)
T KOG2256|consen 397 YVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIP-----------------TPQYYPLRLHCIRSLISLSRSS 459 (661)
T ss_pred HHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcC-----------------cccchhHHHHHHHHHHHHHhhc
Confidence 3678888888876 333334555555555555554433321 1124777988888888888875
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 046316 384 GREGIDAIIDAASKRFNE 401 (966)
Q Consensus 384 ~~~~~~~l~~~i~~~l~~ 401 (966)
|- +-++.+.+.+++..
T Consensus 460 g~--fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 460 GT--FIPLSPLLVEMLKS 475 (661)
T ss_pred Cc--eeecHHHHHHHHHH
Confidence 53 44666777777654
No 266
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=21.20 E-value=9.4e+02 Score=25.00 Aligned_cols=166 Identities=19% Similarity=0.196 Sum_probs=86.3
Q ss_pred cCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHH
Q 046316 498 AMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLI 576 (966)
Q Consensus 498 ~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~ 576 (966)
....+..++.....+|..++.+. - +..+.+++.|..+.+....+.-...+.-+....+.++ .-+ .+-+++
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~----~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~----~L~~~L 80 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHK----N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFP----FLQPLL 80 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccC----c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHH----HHHHHH
Confidence 33345566677777777777653 1 5556666777777777766664455555555555544 111 222222
Q ss_pred HHHHHh---h--cCChh--HHHHHHHHHHHHHc-CCCcHHHHHHhhhcchHhhhc-CCCCCCchhhHHHHHHHHHHhhcC
Q 046316 577 LNIWAL---H--VSDPF--ISIDAIEVLEAIKC-SPGCIHQLASRILPYVGPILN-NPQQQPDGLVAGSLDLLTMLLKSA 647 (966)
Q Consensus 577 l~l~~~---~--~~d~~--~~~~~~~~l~~l~~-~~~~~~~l~~~~lP~l~~~l~-~~~~~~~~~~~~al~ll~~l~~~~ 647 (966)
...-.+ . ..+.. .....--++..++. .|+ .-.-+++.|..++. .. .......++|.+..+.++-
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~---~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC---DEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHh
Confidence 221011 1 11111 11122235555553 355 34577888888884 32 2245678899999999653
Q ss_pred ChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHH
Q 046316 648 STDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLA 684 (966)
Q Consensus 648 ~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~ 684 (966)
--++.+. +..+.+-+.....+.+.+..++.+.
T Consensus 154 vvd~~s~-----w~vl~~~l~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 154 VVDFYSA-----WKVLQKKLSLDYRPLVLKSLCSLFA 185 (234)
T ss_pred hccHHHH-----HHHHHHhcCCccchHHHHHHHHHHH
Confidence 3333332 2333333333456666665444433
No 267
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=21.19 E-value=1.1e+02 Score=34.56 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.5
Q ss_pred CCCCCccc
Q 046316 944 QGDDYEDD 951 (966)
Q Consensus 944 ~~~~~~~~ 951 (966)
|||||+++
T Consensus 113 DDEdD~~s 120 (458)
T PF10446_consen 113 DDEDDDGS 120 (458)
T ss_pred cccccccc
Confidence 44444333
No 268
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.10 E-value=4.6e+02 Score=25.56 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=48.1
Q ss_pred chHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHHH
Q 046316 114 DLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHT-IVSFPESYDRYVRTKALSIVYSCT 188 (966)
Q Consensus 114 ~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~-i~~~~~~~~~~~r~~al~i~~~~~ 188 (966)
+|.+.+.+.+.+. ++.....+++++..+...+.+ .+..=...+++.++. ++.+.. .+...|..++++++...
T Consensus 73 ~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~~-~Lk~ele~~l~~i~~~il~~~~-~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 73 DLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFRS-HLKLELEVFLSHIILRILESDN-SSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHHH
Confidence 5777777777764 577888999999998877644 222223566777666 666554 24567777888777654
No 269
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=21.01 E-value=2.4e+02 Score=24.23 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=31.5
Q ss_pred cCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHH
Q 046316 341 QMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAAS 396 (966)
Q Consensus 341 ~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~ 396 (966)
++|+++.|..... .+..+.+.+|..|+..|. ++...++.++.++.
T Consensus 29 ~Lt~~d~e~I~a~---------~~~~G~~~aa~~Ll~~L~--r~~~Wf~~Fl~AL~ 73 (84)
T cd08789 29 CLTAEDKERIQAA---------ENNSGNIKAAWTLLDTLV--RRDNWLEPFLDALR 73 (84)
T ss_pred cCCHHHHHHHHHH---------HhcCChHHHHHHHHHHHh--ccCChHHHHHHHHH
Confidence 8888887754321 134677889999999998 56666777666554
No 270
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=20.66 E-value=1.5e+03 Score=27.27 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=25.8
Q ss_pred ccchhhHHHHHHHHHHHHhChhhHHHHHHHHH
Q 046316 365 TYSCRVSGALLLEEVVSYCGREGIDAIIDAAS 396 (966)
Q Consensus 365 ~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~ 396 (966)
.-++|..|.-+|..++..++..++.+++....
T Consensus 295 e~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY 326 (661)
T KOG2256|consen 295 EESLRVLAFLCLIDLCRKFKSTCLDPVLKTMY 326 (661)
T ss_pred CcchhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46789999999999999999887766665443
No 271
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=20.65 E-value=1.2e+03 Score=26.14 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHH--HHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChh
Q 046316 388 IDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQ--LLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPF 465 (966)
Q Consensus 388 ~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~--l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 465 (966)
++.++.++++-+... .+.+++..-+.--.||.++|.+... +.+. .+-++..|+-.+....+. ..+.+.-
T Consensus 37 ~~~l~~~i~rDi~~~---~~~~~p~~~~L~~qALkll~~~l~~~~i~~~-----l~~d~~~~~i~~~i~~l~-~~~~~K~ 107 (372)
T PF12231_consen 37 MSLLLQFIQRDISSS---SSKGDPFDSRLVIQALKLLGFFLYHPEIVST-----LSDDFASFIIDHSIESLQ-NPNSPKS 107 (372)
T ss_pred HHHHHHHHHHHHhcc---cCCCCCcchHHHHHHHHHHHHHHccHHHHhh-----CChHHHHHHHHHHHHHHc-CCCCCHH
Confidence 344555666555432 1224444567888889988887642 1111 122344433333333443 2356678
Q ss_pred HHHHHHHHHHH--hhhhc-ChhHHHHHHHHHHhhhcC-CCCCcEehhHHHHHHhhcccCCCCCcc----ccHHHHHHHHH
Q 046316 466 LYARIFASVAR--FSSAI-SDGVLEHFLSAAITTIAM-DVPPPVKVGACRALSELLPKANKGNFQ----PQMMGLFSSLA 537 (966)
Q Consensus 466 Lr~Ra~~~l~~--f~~~~-~~~~~~~~l~~~~~~L~~-~~~~~Vr~~A~~al~~~~~~~~~~~l~----p~l~~il~~L~ 537 (966)
+..+++|+++. |...+ +.+.... +-.++..+.+ =++..|-..+..++++++...+ +.+. -+++.++..++
T Consensus 108 i~~~~l~~ls~Q~f~~~~~~~~~~~~-l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p-~~M~~~~~~W~~~l~~~l~ 185 (372)
T PF12231_consen 108 ICTHYLWCLSDQKFSPKIMTSDRVER-LLAALHNIKNRFPSKSIISERLNIYKRLLSQFP-QQMIKHADIWFPILFPDLL 185 (372)
T ss_pred HHHHHHHHHHcCCCCCcccchhhHHH-HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 88899999984 44432 2233333 3333444442 2345666778889999887532 2233 24454555444
Q ss_pred H
Q 046316 538 D 538 (966)
Q Consensus 538 ~ 538 (966)
.
T Consensus 186 ~ 186 (372)
T PF12231_consen 186 S 186 (372)
T ss_pred h
Confidence 4
No 272
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=20.51 E-value=2.4e+02 Score=31.11 Aligned_cols=53 Identities=19% Similarity=0.334 Sum_probs=32.9
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHH
Q 046316 81 LLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCL 139 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L 139 (966)
+...+.+....||...+.++..+.... +.+.+.+...+.+. +......++..|
T Consensus 185 l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~-~~~vr~~~~~~l 237 (335)
T COG1413 185 LIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDE-SLEVRKAALLAL 237 (335)
T ss_pred HHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCC-CHHHHHHHHHHh
Confidence 334445566678888888888777655 45666666666653 555555555544
No 273
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=20.50 E-value=53 Score=38.62 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=6.8
Q ss_pred ccccccchhH
Q 046316 816 GEIQGAYPIK 825 (966)
Q Consensus 816 ~~~~g~~~~K 825 (966)
+-++|.|.+|
T Consensus 492 P~YyGTWrKK 501 (811)
T KOG4364|consen 492 PGYYGTWRKK 501 (811)
T ss_pred Cccccccccc
Confidence 4567777777
No 274
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=20.49 E-value=5.7e+02 Score=24.34 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=47.1
Q ss_pred chHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhh-hhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Q 046316 114 DLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKL-VPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTA 189 (966)
Q Consensus 114 ~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i-~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~ 189 (966)
+.+..|...|++ +|++....||.+|..+++.-...--..+ ...++..|.+++.. .....+|.+++.++.+-..
T Consensus 41 ~a~ral~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLS-KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT--TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc--cCCHHHHHHHHHHHHHHHH
Confidence 577788888887 4889999999999998886433211111 24456666666654 2456677666665555443
No 275
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=20.23 E-value=6.3e+02 Score=28.96 Aligned_cols=114 Identities=11% Similarity=-0.001 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCHHHhHHHHHHHHhhccCcHHHHHHHHhhhccccccccccCCCCChHHHHHH----HHHHHHHhhhchH
Q 046316 15 LLNCLSATLDPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKHWQEGEESFELPAVSSEEKEVI----RKLLLSSLDDTHR 90 (966)
Q Consensus 15 l~~~L~~~ls~d~~~R~~AE~~L~~~~~~pA~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~I----R~~Ll~~L~~~~~ 90 (966)
+..++....+++.++|..|=..|..+...-+.-.|...++.. . +..+...+ +.+... -..+...|.+++.
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~-~---p~vR~aal--~al~~r~~~~~~~L~~~L~d~d~ 161 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAAS-E---PPGRAIGL--AALGAHRHDPGPALEAALTHEDA 161 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCC-C---hHHHHHHH--HHHHhhccChHHHHHHHhcCCCH
Confidence 344444455677778888888877655432333333333110 0 00000000 000000 1245555677788
Q ss_pred HHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHH
Q 046316 91 KICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALL 142 (966)
Q Consensus 91 kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l 142 (966)
.+|..+..+++.|. +++.++.|...+.+. |+....+|+..|..+
T Consensus 162 ~Vra~A~raLG~l~-------~~~a~~~L~~al~d~-~~~VR~aA~~al~~l 205 (410)
T TIGR02270 162 LVRAAALRALGELP-------RRLSESTLRLYLRDS-DPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHHHHHhhc-------cccchHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 88888888887765 345677777777764 777777777777443
No 276
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=20.03 E-value=2.5e+02 Score=23.44 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhh
Q 046316 416 MREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSA 480 (966)
Q Consensus 416 ~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~ 480 (966)
.+-++|.++|.++..-... . -....++ +..++ .... .++..-+|+.|++++|-++..
T Consensus 3 ~lKaaLWaighIgss~~G~-~-lL~~~~i---v~~iv-~~a~--~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI-Q-LLDESDI---VEDIV-KIAE--NSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChHHH-H-HHhhcCH---HHHHH-HHHH--hCCccchHHHHHHHHHHHhCC
Confidence 3457899999887531100 0 0000122 22222 1222 367788999999999998765
Done!