Query 046316
Match_columns 966
No_of_seqs 300 out of 1508
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 19:01:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 100.0 3.3E-70 1.1E-74 694.7 64.2 758 9-838 1-845 (960)
2 4fdd_A Transportin-1; heat rep 100.0 1.3E-50 4.3E-55 509.9 62.5 729 10-843 10-791 (852)
3 2bpt_A Importin beta-1 subunit 100.0 4.4E-41 1.5E-45 424.3 55.3 657 10-759 1-733 (861)
4 2x19_B Importin-13; nuclear tr 100.0 1.2E-37 4E-42 397.5 59.1 718 10-793 21-905 (963)
5 1qgr_A Protein (importin beta 100.0 1.1E-37 3.9E-42 393.8 50.8 654 14-759 2-744 (876)
6 3m1i_C Exportin-1; heat repeat 100.0 4.5E-38 1.5E-42 402.9 45.7 704 7-789 10-840 (1049)
7 2x1g_F Cadmus; transport prote 100.0 2.5E-36 8.6E-41 385.1 55.3 718 10-793 4-917 (971)
8 4hat_C Exportin-1; heat repeat 100.0 1.6E-31 5.6E-36 334.4 40.8 702 8-763 11-913 (1023)
9 1ibr_B P95, importin beta-1 su 100.0 1.7E-31 5.9E-36 311.4 27.0 407 14-498 2-461 (462)
10 3gjx_A Exportin-1; transport, 100.0 8E-28 2.8E-32 298.9 53.0 688 8-762 23-936 (1073)
11 3ibv_A Exportin-T; karyopherin 100.0 7.8E-28 2.7E-32 301.3 51.5 718 9-837 2-871 (980)
12 3a6p_A Exportin-5; exportin-5, 99.9 3.5E-24 1.2E-28 275.3 37.1 524 12-582 10-682 (1204)
13 1u6g_C TIP120 protein, CAND1; 99.9 1.7E-22 5.9E-27 263.8 42.4 687 12-780 5-765 (1230)
14 4fdd_A Transportin-1; heat rep 99.9 1.6E-17 5.4E-22 208.6 51.1 677 14-789 49-791 (852)
15 1qgr_A Protein (importin beta 99.8 1.1E-17 3.9E-22 210.8 43.7 612 74-780 33-723 (876)
16 2bpt_A Importin beta-1 subunit 99.8 1.1E-15 3.6E-20 192.4 57.3 607 73-760 176-836 (861)
17 1u6g_C TIP120 protein, CAND1; 99.7 1.1E-14 3.9E-19 189.9 46.0 628 45-840 26-725 (1230)
18 1b3u_A Protein (protein phosph 99.6 4.4E-13 1.5E-17 160.6 38.4 563 79-775 13-583 (588)
19 1b3u_A Protein (protein phosph 99.6 8.1E-12 2.8E-16 149.6 41.7 284 366-686 295-585 (588)
20 1wa5_C Importin alpha RE-expor 99.2 1.6E-06 5.4E-11 109.8 54.9 315 365-717 418-771 (960)
21 2x1g_F Cadmus; transport prote 99.2 1.2E-06 4E-11 111.4 53.5 306 462-788 476-820 (971)
22 2x19_B Importin-13; nuclear tr 99.2 3.3E-06 1.1E-10 107.2 55.8 347 461-837 460-847 (963)
23 1ibr_B P95, importin beta-1 su 99.0 7.1E-08 2.4E-12 111.3 25.2 376 79-540 38-460 (462)
24 2vgl_B AP-2 complex subunit be 98.9 4.8E-07 1.7E-11 107.9 30.3 431 16-555 52-527 (591)
25 2jdq_A Importin alpha-1 subuni 98.8 4.8E-07 1.6E-11 104.0 26.2 390 80-560 24-443 (450)
26 2vgl_B AP-2 complex subunit be 98.7 9.4E-06 3.2E-10 96.7 30.9 466 81-684 54-528 (591)
27 3now_A UNC-45 protein, SD10334 98.6 4E-05 1.4E-09 92.5 34.1 511 89-691 217-785 (810)
28 2jdq_A Importin alpha-1 subuni 98.6 3.1E-06 1.1E-10 97.1 23.1 300 366-690 34-349 (450)
29 2z6g_A B-catenin; FULL-length, 98.6 4.3E-05 1.5E-09 94.0 34.3 510 79-691 118-666 (780)
30 4hat_C Exportin-1; heat repeat 98.5 0.0012 4.1E-08 82.9 46.3 309 462-780 465-834 (1023)
31 1wa5_B Importin alpha subunit; 98.5 8.3E-06 2.8E-10 96.0 25.3 391 80-561 91-511 (530)
32 1w63_A Adapter-related protein 98.5 7.5E-05 2.6E-09 89.3 33.4 409 17-519 74-541 (618)
33 3m1i_C Exportin-1; heat repeat 98.5 0.00088 3E-08 85.4 44.8 395 365-779 466-929 (1049)
34 3ibv_A Exportin-T; karyopherin 98.5 0.0065 2.2E-07 76.1 50.4 506 88-665 205-787 (980)
35 1wa5_B Importin alpha subunit; 98.4 2.1E-06 7.2E-11 101.1 16.9 263 413-691 144-415 (530)
36 2z6h_A Catenin beta-1, beta-ca 98.4 0.00064 2.2E-08 81.8 38.9 474 79-647 17-529 (644)
37 4b8j_A Importin subunit alpha- 98.4 9.1E-06 3.1E-10 95.5 21.5 302 367-691 89-403 (528)
38 3now_A UNC-45 protein, SD10334 98.4 0.011 3.9E-07 71.3 47.6 622 115-838 50-739 (810)
39 2z6g_A B-catenin; FULL-length, 98.4 0.00021 7.1E-09 87.9 33.1 471 81-648 155-666 (780)
40 1w63_A Adapter-related protein 98.4 0.00061 2.1E-08 81.3 36.0 485 82-686 76-575 (618)
41 4b8j_A Importin subunit alpha- 98.3 9.1E-06 3.1E-10 95.5 17.1 349 461-838 85-445 (528)
42 2z6h_A Catenin beta-1, beta-ca 98.2 0.0018 6.2E-08 77.8 34.3 494 113-718 13-548 (644)
43 2vgl_A Adaptor protein complex 98.1 0.0044 1.5E-07 73.8 35.4 149 16-167 77-238 (621)
44 1jdh_A Beta-catenin; beta-cate 98.1 0.0068 2.3E-07 70.6 36.2 493 78-686 19-528 (529)
45 2vgl_A Adaptor protein complex 98.0 0.018 6.2E-07 68.4 39.0 451 71-601 106-588 (621)
46 2qk1_A Protein STU2; STU2P, XM 98.0 4.2E-05 1.4E-09 80.0 13.6 182 412-603 28-221 (249)
47 2qk2_A LP04448P; mini spindles 97.9 0.00016 5.4E-09 75.3 16.5 175 364-560 27-205 (242)
48 3tpo_A Importin subunit alpha- 97.9 0.00038 1.3E-08 81.6 19.5 265 413-691 175-452 (529)
49 2qk1_A Protein STU2; STU2P, XM 97.8 0.00075 2.6E-08 70.4 18.1 199 22-260 25-233 (249)
50 3tpo_A Importin subunit alpha- 97.7 0.0042 1.4E-07 72.7 25.0 263 414-691 134-409 (529)
51 3ul1_B Importin subunit alpha- 97.7 0.0006 2.1E-08 79.5 17.2 265 413-691 156-433 (510)
52 4hxt_A De novo protein OR329; 97.7 0.00045 1.5E-08 71.8 14.3 224 461-694 13-247 (252)
53 3ul1_B Importin subunit alpha- 97.7 0.0056 1.9E-07 71.2 25.0 263 414-691 115-390 (510)
54 2qk2_A LP04448P; mini spindles 97.6 0.0017 5.8E-08 67.3 18.3 159 80-267 19-183 (242)
55 4db8_A Armadillo-repeat protei 97.6 0.00025 8.6E-09 74.0 11.5 216 461-687 23-250 (252)
56 1oyz_A Hypothetical protein YI 97.4 0.007 2.4E-07 64.1 19.2 241 366-684 37-278 (280)
57 3l6x_A Catenin delta-1; cateni 96.9 0.079 2.7E-06 61.7 22.6 353 461-836 59-476 (584)
58 4db6_A Armadillo repeat protei 96.8 0.0037 1.3E-07 63.0 9.8 189 489-687 13-208 (210)
59 1oyz_A Hypothetical protein YI 96.8 0.028 9.5E-07 59.3 16.9 209 366-639 68-276 (280)
60 1jdh_A Beta-catenin; beta-cate 96.8 0.045 1.5E-06 63.6 20.1 257 413-689 30-296 (529)
61 2iw3_A Elongation factor 3A; a 96.8 0.0067 2.3E-07 74.5 13.1 298 418-737 70-379 (986)
62 4db6_A Armadillo repeat protei 96.7 0.0056 1.9E-07 61.6 9.9 176 413-601 25-208 (210)
63 4db8_A Armadillo-repeat protei 96.6 0.005 1.7E-07 64.0 9.4 193 490-690 14-211 (252)
64 4hxt_A De novo protein OR329; 96.6 0.0055 1.9E-07 63.4 9.2 192 490-689 4-200 (252)
65 3u0r_A Apoptosis inhibitor 5; 96.5 0.58 2E-05 51.8 24.7 291 461-788 39-364 (507)
66 1xm9_A Plakophilin 1; armadill 96.5 0.046 1.6E-06 62.4 16.8 352 461-836 13-449 (457)
67 3nmw_A APC variant protein; AR 96.4 0.05 1.7E-06 59.6 16.0 224 462-694 96-340 (354)
68 3ltm_A Alpha-REP4; protein eng 96.4 0.026 8.8E-07 56.7 12.6 176 365-606 32-207 (211)
69 3ltj_A Alpharep-4; protein eng 96.3 0.041 1.4E-06 54.7 13.2 172 364-601 26-197 (201)
70 1xqr_A HSPBP1 protein; armadil 96.3 0.035 1.2E-06 59.1 13.3 140 461-603 93-239 (296)
71 2iw3_A Elongation factor 3A; a 96.1 0.19 6.6E-06 61.7 20.5 209 366-601 109-323 (986)
72 2db0_A 253AA long hypothetical 95.9 0.67 2.3E-05 44.2 18.3 202 362-601 42-245 (253)
73 3l6x_A Catenin delta-1; cateni 95.8 4.1 0.00014 47.3 31.7 394 133-603 26-477 (584)
74 3ltm_A Alpha-REP4; protein eng 95.6 0.26 8.7E-06 49.2 15.8 188 10-251 16-206 (211)
75 3ltj_A Alpharep-4; protein eng 95.6 0.23 7.8E-06 49.1 15.3 179 451-686 18-196 (201)
76 3grl_A General vesicular trans 95.6 4.8 0.00017 46.6 28.9 351 461-835 133-544 (651)
77 3nmz_A APC variant protein; pr 95.6 0.14 4.7E-06 58.0 14.8 223 462-692 212-454 (458)
78 3nmw_A APC variant protein; AR 95.2 0.19 6.5E-06 54.9 14.0 219 465-689 47-293 (354)
79 3a6p_A Exportin-5; exportin-5, 95.2 11 0.00037 48.2 36.2 140 366-519 110-277 (1204)
80 1xm9_A Plakophilin 1; armadill 94.9 0.17 5.8E-06 57.6 13.3 193 490-688 4-220 (457)
81 3nmz_A APC variant protein; pr 94.6 0.24 8.2E-06 56.0 13.3 218 467-690 165-410 (458)
82 3grl_A General vesicular trans 94.4 0.17 6E-06 58.5 11.4 193 488-690 21-243 (651)
83 1xqr_A HSPBP1 protein; armadil 94.4 0.33 1.1E-05 51.5 13.0 178 506-691 57-241 (296)
84 3tjz_B Coatomer subunit gamma; 93.6 0.18 6.2E-06 54.7 9.1 149 379-560 57-205 (355)
85 3tjz_B Coatomer subunit gamma; 93.4 0.34 1.2E-05 52.5 10.8 234 366-648 82-319 (355)
86 3gjx_A Exportin-1; transport, 93.2 23 0.00078 44.3 36.3 366 68-479 509-904 (1073)
87 3b2a_A TON_1937, putative unch 93.1 1.9 6.5E-05 43.0 14.4 171 461-646 44-219 (265)
88 3b2a_A TON_1937, putative unch 92.7 4.9 0.00017 40.1 16.7 169 413-603 46-219 (265)
89 3oc3_A Helicase MOT1, MOT1; re 91.1 0.3 1E-05 54.8 6.8 185 464-684 242-432 (800)
90 3opb_A SWI5-dependent HO expre 90.4 35 0.0012 40.6 37.4 225 461-691 468-731 (778)
91 4ffb_C Protein STU2; tubulin f 89.0 0.65 2.2E-05 48.7 7.3 182 364-561 21-213 (278)
92 2db0_A 253AA long hypothetical 88.8 8 0.00027 37.0 13.4 180 486-690 30-212 (253)
93 1te4_A Conserved protein MTH18 88.0 1.1 3.8E-05 40.7 7.4 104 413-555 25-128 (131)
94 3tt9_A Plakophilin-2; cell adh 88.0 2.9 0.0001 42.3 11.1 129 490-622 10-144 (233)
95 2npp_B PP2A, B subunit, serine 87.7 35 0.0012 37.8 20.2 222 10-257 159-408 (449)
96 3fga_B Serine/threonine-protei 87.2 7.8 0.00027 42.3 14.4 223 10-258 126-376 (403)
97 2of3_A ZYG-9; multifunctional 86.2 24 0.00083 36.2 16.8 112 66-189 122-236 (266)
98 1te4_A Conserved protein MTH18 86.1 1.6 5.4E-05 39.6 7.2 83 79-183 45-127 (131)
99 1vsy_4 Proteasome activator BL 84.2 79 0.0027 38.0 23.8 276 485-780 336-646 (799)
100 4atg_A TAF6; transcription, TF 83.3 17 0.00057 35.4 13.2 147 485-642 8-159 (196)
101 1upk_A MO25 protein; transfera 79.3 67 0.0023 33.9 21.7 162 74-258 72-250 (341)
102 3oc3_A Helicase MOT1, MOT1; re 78.9 18 0.00061 40.9 12.8 174 360-563 182-368 (800)
103 4ady_A RPN2, 26S proteasome re 78.8 1.1E+02 0.0038 37.3 20.9 286 414-760 409-699 (963)
104 4gmo_A Putative uncharacterize 77.0 5.6 0.00019 47.5 9.3 58 461-520 45-107 (684)
105 2jak_A Serine/threonine-protei 76.6 35 0.0012 36.9 14.4 166 10-184 171-362 (392)
106 1vsy_4 Proteasome activator BL 74.9 79 0.0027 38.0 18.4 100 461-560 350-455 (799)
107 3l9t_A Putative uncharacterize 74.0 7 0.00024 39.1 7.4 125 364-519 83-208 (240)
108 4ffb_C Protein STU2; tubulin f 72.6 29 0.001 35.7 12.6 98 85-188 112-211 (278)
109 3fga_B Serine/threonine-protei 69.7 1.3E+02 0.0045 32.7 17.4 115 572-695 252-373 (403)
110 3gs3_A Symplekin, LD45768P; he 68.0 97 0.0033 31.5 14.7 111 70-191 6-125 (257)
111 4ady_A RPN2, 26S proteasome re 67.1 36 0.0012 41.5 12.9 88 461-560 589-676 (963)
112 4atg_A TAF6; transcription, TF 66.6 31 0.0011 33.5 10.0 94 547-648 24-122 (196)
113 3qml_C Protein SLS1, nucleotid 66.1 55 0.0019 34.0 12.2 134 111-257 111-256 (315)
114 2of3_A ZYG-9; multifunctional 64.5 68 0.0023 32.8 12.7 134 414-561 101-237 (266)
115 3tt9_A Plakophilin-2; cell adh 62.8 12 0.00042 37.7 6.7 103 80-187 12-122 (233)
116 1w9c_A CRM1 protein, exportin 62.4 1.2E+02 0.004 31.9 14.2 52 590-647 147-198 (321)
117 1w9c_A CRM1 protein, exportin 61.3 35 0.0012 35.9 10.0 180 591-778 47-244 (321)
118 2npp_B PP2A, B subunit, serine 61.1 1.6E+02 0.0056 32.5 15.7 114 572-694 285-405 (449)
119 3dad_A FH1/FH2 domain-containi 59.2 1.8E+02 0.0062 30.6 15.5 160 525-691 112-289 (339)
120 4gmo_A Putative uncharacterize 59.0 25 0.00085 41.8 9.7 73 15-110 36-110 (684)
121 1vsy_5 Proteasome activator BL 55.5 26 0.00089 43.4 9.1 115 68-189 126-245 (997)
122 3o2t_A Symplekin; heat repeat, 47.6 3E+02 0.01 29.7 17.6 105 81-190 68-184 (386)
123 4flb_A Regulation of nuclear P 45.2 80 0.0027 28.2 8.6 61 81-148 13-73 (132)
124 1vsy_5 Proteasome activator BL 36.4 39 0.0013 41.8 6.4 96 68-167 835-944 (997)
125 3u0r_A Apoptosis inhibitor 5; 31.6 5.7E+02 0.02 28.3 19.3 155 461-623 111-278 (507)
126 1sz9_A PCF11 protein; RNA poly 29.9 3.2E+02 0.011 24.8 10.5 38 110-148 39-76 (144)
127 1vdy_A Hypothetical protein (R 28.6 38 0.0013 30.9 3.3 51 97-148 29-82 (140)
128 3eg5_B Protein diaphanous homo 28.2 5.8E+02 0.02 27.3 13.5 58 587-647 134-193 (383)
129 2fv2_A RCD1 required for cell 27.0 5E+02 0.017 26.2 14.4 121 235-388 17-138 (268)
130 1lsh_A Lipovitellin (LV-1N, LV 24.6 9.4E+02 0.032 29.7 16.2 144 20-185 383-539 (1056)
131 2fv2_A RCD1 required for cell 24.1 5.6E+02 0.019 25.8 13.4 163 13-186 3-221 (268)
132 2lwd_A Probable ATP-dependent 23.0 1.6E+02 0.0056 25.0 6.1 51 337-396 34-86 (100)
133 3gs3_A Symplekin, LD45768P; he 22.1 6.1E+02 0.021 25.5 18.4 108 78-190 55-174 (257)
134 3lge_E Sorting nexin-9; comple 21.9 26 0.00087 22.1 0.5 9 903-911 11-19 (31)
135 4fu3_A Regulation of nuclear P 20.8 2.7E+02 0.0091 24.7 7.7 77 81-164 12-94 (135)
136 3d9j_A RNA-binding protein 16; 20.7 2E+02 0.0068 26.2 6.7 52 90-148 24-75 (145)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=3.3e-70 Score=694.75 Aligned_cols=758 Identities=13% Similarity=0.198 Sum_probs=591.5
Q ss_pred cCCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhccccccccccC
Q 046316 9 DQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGEESFEL 66 (966)
Q Consensus 9 ~~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~~~~~~ 66 (966)
|.|.++|.++|.+++|||+++| ||++|++++++| |+++|||+|+++|+...+.
T Consensus 1 M~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~--- 75 (960)
T 1wa5_C 1 MSDLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGN--- 75 (960)
T ss_dssp CCHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSC---
T ss_pred CCcHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccC---
Confidence 4567899999999999999999 999999998887 9999999999999865432
Q ss_pred CCCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc
Q 046316 67 PAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL 146 (966)
Q Consensus 67 ~~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l 146 (966)
+.+++++|..||+.|++++.++++.||+++|.+|+.||++|||++||+|++.|++.++++ ++..++|||.+|+.++++.
T Consensus 76 ~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 76 HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999987779999999999999999999999999999999999884 8889999999999999975
Q ss_pred cc-----c---chhhhhhhHHHHHHHHh-------cCCCCCcH------HHHHHHHHHHHHHHHHHHhhhccchhHHHHh
Q 046316 147 DD-----A---IVPKLVPVLFPVLHTIV-------SFPESYDR------YVRTKALSIVYSCTAMLGVMSGVCKTEMFAL 205 (966)
Q Consensus 147 ~~-----~---~~~~i~~~l~p~L~~i~-------~~~~~~~~------~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~ 205 (966)
.. + .+..+....+|.+++++ ++...... .++..++|+|+.+.. .+.+++
T Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~----------~~~~~~ 224 (960)
T 1wa5_C 155 RPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNC----------QDIPEF 224 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHS----------SCCCHH
T ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh----------ccchHH
Confidence 32 1 22334555566555544 32211111 222334555543221 123455
Q ss_pred hHhhhHHHHHHHHHHhcCCCCC--CC---C---ChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHH
Q 046316 206 MMPMLKPWMNHFSIILEHPVQP--ED---P---DDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYT 277 (966)
Q Consensus 206 ~~~~l~~w~~~~~~~L~~~~~~--~d---~---~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~ 277 (966)
+.+.+..|++.|.++++...+. .| . ..+++|+++++++.+++++|++.|.++++.+++.+|+.+.. +
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~----~- 299 (960)
T 1wa5_C 225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTS----I- 299 (960)
T ss_dssp HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH----C-
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-
Confidence 6778999999999999874331 11 1 12689999999999999999999999999999988887653 1
Q ss_pred HhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHH--HhHHHHHH-HHHHhhcCCHHHHHHHhhCH
Q 046316 278 RSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIA--SNVRELVY-HTIAFLQMTEQQIHIWSIDA 354 (966)
Q Consensus 278 ~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~--~~l~~li~-~li~~~~lt~ed~e~w~~Dp 354 (966)
.. . ...++++.++++||.++++.+..++.++ +++..++. .++|+|+++++|++.|++||
T Consensus 300 ----~~-------~-------~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp 361 (960)
T 1wa5_C 300 ----SN-------Q-------PKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP 361 (960)
T ss_dssp ----CS-------C-------TTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH
T ss_pred ----CC-------C-------cCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH
Confidence 00 0 1127899999999999999888887876 89999995 55599999999999999999
Q ss_pred HHHhhccc--CCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHH
Q 046316 355 NQFLADED--ESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLL 432 (966)
Q Consensus 355 ~~fv~de~--d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~ 432 (966)
++|++++. ++.+|+|.+|.++|..++.++++.+++.+++++.+.++++.+.+ ..+|+.||||++++|+++++..
T Consensus 362 ~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~----~~~w~~reaal~algaia~~~~ 437 (960)
T 1wa5_C 362 IEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP----SKNWKFKDLYIYLFTALAINGN 437 (960)
T ss_dssp HHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHBSSC
T ss_pred HHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCc----chhHHHHHHHHHHHHHHHHHhc
Confidence 99998654 35689999999999999999998899999999999998764321 2369999999999999976421
Q ss_pred HhHhcCC----ccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehh
Q 046316 433 EAEVSGL----TSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVG 508 (966)
Q Consensus 433 ~~~~~~~----~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~ 508 (966)
.... +. ..+++.+|+.+++.|.++...+.+|+||+||||++|+|+++++++.+.++++.++++|. +.+.+||.+
T Consensus 438 ~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~-d~~~~V~~~ 515 (960)
T 1wa5_C 438 ITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ-TDEYVVYTY 515 (960)
T ss_dssp CBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTT-CSCHHHHHH
T ss_pred cccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhC-CCChhHHHH
Confidence 1110 11 12378999999999999821123999999999999999999988899999999999987 447899999
Q ss_pred HHHHHHhhcccC----------CCCCccccHHHHHHHHHHHHhhc--------ChhhHHHHHHHHHHHHhhcchhhcccc
Q 046316 509 ACRALSELLPKA----------NKGNFQPQMMGLFSSLADLLHQA--------RDETLHLVLETLQAAIKAGFLTASMEP 570 (966)
Q Consensus 509 A~~al~~~~~~~----------~~~~l~p~l~~il~~L~~ll~~~--------~~d~l~~~le~l~~~i~~~~~~~~~~~ 570 (966)
||.|+.+|++.. .++.+.||++++++.|+.++++. +.+.+..++..++...+.+ .. ++..
T Consensus 516 A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~-~~-p~~~ 593 (960)
T 1wa5_C 516 AAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS-IQ-PLFP 593 (960)
T ss_dssp HHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT-TG-GGHH
T ss_pred HHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHh-hh-hHHH
Confidence 999999999741 24669999999999999999986 4455555555555555432 22 3555
Q ss_pred cchHHHHHHHHhh---cCChhHHHHHHHHHHHHHcC--CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhh
Q 046316 571 MISPLILNIWALH---VSDPFISIDAIEVLEAIKCS--PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLK 645 (966)
Q Consensus 571 ~l~p~~l~l~~~~---~~d~~~~~~~~~~l~~l~~~--~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~ 645 (966)
.+++.+..+|.+. ..|+.++..+.+|+..+... |+.+.++++.++|++..++++... ++...++++++.+++
T Consensus 594 ~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~---~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 594 QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQ---EFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCT---TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhH---hhHHHHHHHHHHHHH
Confidence 6778777777654 45677787888999888854 678999999999999999987643 467788888888887
Q ss_pred cCChhHHHHHHHHHhHHHH--HHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCc
Q 046316 646 SASTDVVKAAYDVCFDAVI--RIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESS 723 (966)
Q Consensus 646 ~~~~~l~~~~~~~~fp~l~--~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~ 723 (966)
.. .++++. +..+||.+. ..+.. . +++..+.++|.+|+..++++|.+ ++.+++++.+++.....+
T Consensus 671 ~~-~~~~~~-~~~~~~~l~~~~~~~~-~--~~~~~~~~~L~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~- 736 (960)
T 1wa5_C 671 QS-ATIPES-IKPLAQPLLAPNVWEL-K--GNIPAVTRLLKSFIKTDSSIFPD--------LVPVLGIFQRLIASKAYE- 736 (960)
T ss_dssp HC-SSCCTT-TGGGHHHHTSGGGGCC-T--TTHHHHHHHHHHHHHHHGGGCSC--------SHHHHHHHHHHHTCTTTH-
T ss_pred hc-cCCCHH-HHHHHHHHcCHHHhcC-C--CCchhHHHHHHHHHHhChHHHHH--------HHHHHHHHHHHhCCCccc-
Confidence 65 233332 233477777 54432 2 37888899999999998877752 567888888887654332
Q ss_pred cccchHHHHHHHHHhCChh-hhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhcCCCHHHHHHHhhcCCCCCCc
Q 046316 724 GSLFVGSYILQLILHLPSQ-MAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLV-HMSAPNVEWFINMLMTIPSEGYG 801 (966)
Q Consensus 724 ~~~~vg~Lv~~li~~~~~~-l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~-~~~~~~~~~~l~~L~~i~~~~~~ 801 (966)
..++.++..++.+++++ +.||++.++..++.+|+..++..+++.++..++.++ .+ +|+.+++.|.+++.+
T Consensus 737 --~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~i~~~--- 808 (960)
T 1wa5_C 737 --VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKL---GSDFLIHFIDEVQDG--- 808 (960)
T ss_dssp --HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHH---CHHHHHHHHHTTSTT---
T ss_pred --chHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHc---CHHHHHHHHHhcchh---
Confidence 46788999999999998 899999999999999998888888888887777764 45 889999999876521
Q ss_pred CcHHHHHHHHhcccccccccchhHHHHHHHHHHHccC
Q 046316 802 NSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTR 838 (966)
Q Consensus 802 ~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~~~ 838 (966)
.....+++.||.+..++.|.++||++++|||+|+..+
T Consensus 809 ~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~ 845 (960)
T 1wa5_C 809 LFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVING 845 (960)
T ss_dssp HHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcc
Confidence 2355677899999999999999999999999999988
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.3e-50 Score=509.93 Aligned_cols=729 Identities=15% Similarity=0.232 Sum_probs=567.0
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc-----------------------HHHHHHHHhhhccccccccccC
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP-----------------------AAVLLKHFIKKHWQEGEESFEL 66 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p-----------------------A~i~LKn~I~~~W~~~~~~~~~ 66 (966)
.+.++|.++|.+++|||+++|++||++|++++.+| |+++|||.|+++|.
T Consensus 10 ~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~-------- 81 (852)
T 4fdd_A 10 QGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-------- 81 (852)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG--------
T ss_pred hhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC--------
Confidence 46788999999999999999999999999999877 89999999999998
Q ss_pred CCCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc
Q 046316 67 PAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL 146 (966)
Q Consensus 67 ~~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l 146 (966)
.++++.|..||+.++++|.++++.||++++.+|+.|++.|||+.||++++.|++.++++ ++..+++|+.+|..++++.
T Consensus 82 -~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~ 159 (852)
T 4fdd_A 82 -NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDS 159 (852)
T ss_dssp -GCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999985 8889999999999999987
Q ss_pred ccc----chhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhc
Q 046316 147 DDA----IVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILE 222 (966)
Q Consensus 147 ~~~----~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~ 222 (966)
... .+......++|.+++.++++ +..+|..|++.+..++.. .. ..+.+.++.+++.+...++
T Consensus 160 ~~~~~~~~~~~~~~~il~~l~~~l~~~---~~~vR~~A~~aL~~~~~~-------~~----~~~~~~~~~~l~~l~~~~~ 225 (852)
T 4fdd_A 160 AEILDSDVLDRPLNIMIPKFLQFFKHS---SPKIRSHAVACVNQFIIS-------RT----QALMLHIDSFIENLFALAG 225 (852)
T ss_dssp TTHHHHCSSSSCHHHHHHHHTTTTTCS---SHHHHHHHHHHHHTTTTT-------TC----HHHHTSHHHHHHHHHHHHT
T ss_pred HHHhchhhhcchHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhc-------cc----HHHHHHHHHHHHHHHHHcC
Confidence 542 34455678888888888754 478898888876643321 11 1233455566666666665
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchH
Q 046316 223 HPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLD 302 (966)
Q Consensus 223 ~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~ 302 (966)
. ++..+|++++++|..+.+.+|+.+.+++..+++.+++.+. +.+ +
T Consensus 226 d-------~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~----------------------~~~------~ 270 (852)
T 4fdd_A 226 D-------EEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ----------------------DQD------E 270 (852)
T ss_dssp C-------CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT----------------------CSS------H
T ss_pred C-------CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc----------------------CCc------H
Confidence 3 3457999999999999999999999998887776554321 111 5
Q ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccC-CccchhhHHHHHHHHHHH
Q 046316 303 SFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDE-STYSCRVSGALLLEEVVS 381 (966)
Q Consensus 303 ~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d-~~~s~R~aa~~lL~~L~~ 381 (966)
.++..+++||.++++.+..++.+++++..++..+++.|+.+++|.+.|+.|+++.-.++++ ..|++|.+|...|..+++
T Consensus 271 ~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~ 350 (852)
T 4fdd_A 271 NVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLAN 350 (852)
T ss_dssp HHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHH
Confidence 7889999999999987777777889999999999999999999988777776543211212 469999999999999999
Q ss_pred HhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCC
Q 046316 382 YCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVH 461 (966)
Q Consensus 382 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 461 (966)
.+++.+++.+++++.+.+++ ..|+.|++++.++|.+++...+... ++ +..++. .+.+.++ +
T Consensus 351 ~~~~~~~~~l~~~l~~~l~~----------~~~~~R~aa~~alg~i~~~~~~~~~----~~-l~~~l~-~l~~~l~---d 411 (852)
T 4fdd_A 351 VYRDELLPHILPLLKELLFH----------HEWVVKESGILVLGAIAEGCMQGMI----PY-LPELIP-HLIQCLS---D 411 (852)
T ss_dssp HHGGGGHHHHHHHHHHHHTC----------SSHHHHHHHHHHHHHTTTTTHHHHG----GG-HHHHHH-HHHHHTT---C
T ss_pred hccHHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHhcchHHHH----HH-HHHHHH-HHHHHcC---C
Confidence 99998888898888887753 2599999999999999876543211 22 444443 4445565 8
Q ss_pred CChhHHHHHHHHHHHhhhhcC----hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHH
Q 046316 462 QYPFLYARIFASVARFSSAIS----DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLA 537 (966)
Q Consensus 462 ~~~~Lr~Ra~~~l~~f~~~~~----~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~ 537 (966)
+++.+|..|+|++|+|++.++ ......+++.+++.|. +.+..||..|+.|+.++++... ..+.||++.+++.|.
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~-d~~~~vr~~a~~aL~~l~~~~~-~~l~~~l~~ll~~L~ 489 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL-DSNKRVQEAACSAFATLEEEAC-TELVPYLAYILDTLV 489 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHG-GGGGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhh-HhhHhHHHHHHHHHH
Confidence 899999999999999998753 3567788888888886 4477899999999999998743 348999999999999
Q ss_pred HHHhhcChhhHHHHHHHHHHHHhhcc---hhhcccccchHHHHHHHHhhc-CChhHHHHHHHHHHHHHcC-CCcHHHHHH
Q 046316 538 DLLHQARDETLHLVLETLQAAIKAGF---LTASMEPMISPLILNIWALHV-SDPFISIDAIEVLEAIKCS-PGCIHQLAS 612 (966)
Q Consensus 538 ~ll~~~~~d~l~~~le~l~~~i~~~~---~~~~~~~~l~p~~l~l~~~~~-~d~~~~~~~~~~l~~l~~~-~~~~~~l~~ 612 (966)
.+++..+...+..+++++..++.... ..+.+.+.++|.+++.|..-. .++.++ .+.+|+..++.. ...+.++.+
T Consensus 490 ~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 490 FAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHH
Confidence 99998888777777777766654321 233466788999999986532 345554 678888888843 446666666
Q ss_pred hhhcchHhhhcC-----------C-C--CCCchhhHHHHHHHHHHhhcCChhHHHHHH-HHHhHHHHHHHhccCchHHhh
Q 046316 613 RILPYVGPILNN-----------P-Q--QQPDGLVAGSLDLLTMLLKSASTDVVKAAY-DVCFDAVIRIILQSEDHSEMQ 677 (966)
Q Consensus 613 ~~lP~l~~~l~~-----------~-~--~~~~~~~~~al~ll~~l~~~~~~~l~~~~~-~~~fp~l~~~l~~s~d~~~lq 677 (966)
.++|.+...+.+ + . .....+...++++++.+++..++.+.+.+. ..+++.++.++ .+...++.+
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~~vr~ 647 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM-QDKMPEVRQ 647 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHT-TCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHh-CCCChhHHH
Confidence 666655544432 1 1 112356778899999999988766655421 35677777776 445688999
Q ss_pred hhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHH
Q 046316 678 NATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRR 757 (966)
Q Consensus 678 ~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~r 757 (966)
.+..++..+....++++ .+|+..++.++.+.|+.+ +.+....++..+..+..+++..+.||++.++..++..
T Consensus 648 ~a~~~l~~l~~~~~~~~-------~~~l~~~lp~l~~~l~~~-~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~ 719 (852)
T 4fdd_A 648 SSFALLGDLTKACFQHV-------KPCIADFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEI 719 (852)
T ss_dssp HHHHHHHHHHHHCGGGT-------GGGHHHHHHHHHHTCCTT-SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHcCcc-chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 99999999998877665 468889999888888543 2233345666677777787777899999999999998
Q ss_pred HHHhhh-HHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHHHc
Q 046316 758 LQSAQI-AGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLS 836 (966)
Q Consensus 758 L~~~~~-~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~ 836 (966)
|.+.+. ..++++.+..++|+... +|+.+- +.+..+++.||...+......+|..++-|||.++.
T Consensus 720 l~~~~~~~~~~~~a~~~igrl~~~---~~~~~~------------~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 720 INRPNTPKTLLENTAITIGRLGYV---CPQEVA------------PMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHHHH---CHHHHG------------GGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred hCCCCCCchHHHHHHHHHHHHHHh---CHHHhC------------ccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 876543 57889999999999998 787532 34677999999999999999999999999999999
Q ss_pred cCCcccc
Q 046316 837 TRHPELA 843 (966)
Q Consensus 837 ~~d~~l~ 843 (966)
.+++.+.
T Consensus 785 ~~p~~~~ 791 (852)
T 4fdd_A 785 VNPSGVI 791 (852)
T ss_dssp HCGGGTG
T ss_pred hChHhHH
Confidence 9987544
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=4.4e-41 Score=424.34 Aligned_cols=657 Identities=15% Similarity=0.192 Sum_probs=491.8
Q ss_pred CCHHHHHHHHHHh-cCCCHHHhHHHHHHHHhhccC--c----------------------HHHHHHHHhhhccccccccc
Q 046316 10 QDQQWLLNCLSAT-LDPNQEVRSFAEVSLNQASLQ--P----------------------AAVLLKHFIKKHWQEGEESF 64 (966)
Q Consensus 10 ~~~~~l~~~L~~~-ls~d~~~R~~AE~~L~~~~~~--p----------------------A~i~LKn~I~~~W~~~~~~~ 64 (966)
||.++|.++|.++ +|||+++|++||++|++++.+ | |+++|||.|+++|+...+.+
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHH
Confidence 6788999999999 999999999999999998874 4 89999999999998655432
Q ss_pred --cCCC-CChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCC-CCccchHHHHHHHhcccCchhhHhHHHHHHH
Q 046316 65 --ELPA-VSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWP-EDWPDLLPFLLKLITDQSNMNGVHGGLRCLA 140 (966)
Q Consensus 65 --~~~~-i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P-~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~ 140 (966)
.|.. ++++.|..||+.|++.|.++++++|++++.+|+.|++.||| +.||++++.|++.++++.++..+++|+.+|.
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~ 160 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALG 160 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred HHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2455 99999999999999999998999999999999999999999 5999999999999987437889999999999
Q ss_pred HHHhhccccc--hhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHH
Q 046316 141 LLSADLDDAI--VPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFS 218 (966)
Q Consensus 141 ~l~~~l~~~~--~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~ 218 (966)
.+++++..+. +.+..+.+++.+.+.+.+.. .+..+|..|++++..++..+...... .. ..+..++.+.
T Consensus 161 ~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~vr~~al~~l~~~~~~~~~~~~~-~~--------~~~~ll~~l~ 230 (861)
T 2bpt_A 161 YMCESADPQSQALVSSSNNILIAIVQGAQSTE-TSKAVRLAALNALADSLIFIKNNMER-EG--------ERNYLMQVVC 230 (861)
T ss_dssp HHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHGGGCHHHHTS-HH--------HHHHHHHHHH
T ss_pred HHHHcCChhhhHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHccC-hh--------HHHHHHHHHH
Confidence 9999876543 56778889999999887653 35789999999888776432211000 00 0112334444
Q ss_pred HHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhH-HHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCC
Q 046316 219 IILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFL-VVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGA 297 (966)
Q Consensus 219 ~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~ 297 (966)
..++. +++.+|..++++|..+...+++.+.+++. .++..++.. +. +.+
T Consensus 231 ~~~~~-------~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~------------~~----------~~~-- 279 (861)
T 2bpt_A 231 EATQA-------EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIAT------------MK----------SPN-- 279 (861)
T ss_dssp HHHTC-------SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHH------------TT----------CSS--
T ss_pred HHhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------Hc----------CCc--
Confidence 44432 45789999999999999999998888876 555432211 11 111
Q ss_pred ccchHHHHHHHHHHHHHHhcChhHH---------------HHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhccc
Q 046316 298 EKSLDSFVIQLFEFLLTIVGSAKLV---------------KVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADED 362 (966)
Q Consensus 298 ~~~~~~l~~~~~efl~~~~~~~~~~---------------~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~ 362 (966)
+.+...+++||..+++..... ..+++.+..++..++..+.-.++ |++
T Consensus 280 ----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~--------------d~~ 341 (861)
T 2bpt_A 280 ----DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNE--------------DPE 341 (861)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCC--------------C-C
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccc--------------ccc
Confidence 578899999999987653221 12344556666666655542211 123
Q ss_pred CCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccc
Q 046316 363 ESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSV 442 (966)
Q Consensus 363 d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~ 442 (966)
|+.|++|.+|.++|..++..+++..++.+++++.+.+++ ..|+.|++++.++|.+++.+.. .
T Consensus 342 d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~----------~~~~~r~~a~~~l~~i~~~~~~--------~ 403 (861)
T 2bpt_A 342 DDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA----------DNWRNREAAVMAFGSIMDGPDK--------V 403 (861)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC----------SSHHHHHHHHHHHHHTSSSSCH--------H
T ss_pred cccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCC----------CChhHHHHHHHHHHHHHcCCCH--------H
Confidence 456899999999999999999988888888888877752 2599999999999999754210 1
Q ss_pred cHHHHHHH---HHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC-----hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHH
Q 046316 443 RLGELLEQ---MITEDIGTGVHQYPFLYARIFASVARFSSAIS-----DGVLEHFLSAAITTIAMDVPPPVKVGACRALS 514 (966)
Q Consensus 443 ~~~~~l~~---~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~-----~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~ 514 (966)
.+.+++.+ .+.+.++ ++++.+|.+++|++|+++..+. .+....+++.++++|.++ ..||..||.++.
T Consensus 404 ~~~~~l~~il~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~ 478 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMN---DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTII 478 (861)
T ss_dssp HHHHHHHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 12233332 2334444 7899999999999999998753 456888999999998632 689999999999
Q ss_pred hhcccCC---CCCccccHHHHHHHHHHHHhhcC--hhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhc----
Q 046316 515 ELLPKAN---KGNFQPQMMGLFSSLADLLHQAR--DETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHV---- 584 (966)
Q Consensus 515 ~~~~~~~---~~~l~p~l~~il~~L~~ll~~~~--~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~---- 584 (966)
.+++... +..+.||++.++..|++++...+ .++...+++++..++...+ ....+...++|.+++.|.+..
T Consensus 479 ~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 558 (861)
T 2bpt_A 479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDE 558 (861)
T ss_dssp HHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred HHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9998642 46789999999999999998654 4567778888888877654 334444567888888877541
Q ss_pred ---C------ChhHHHHHHHHHHHHH-cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHH
Q 046316 585 ---S------DPFISIDAIEVLEAIK-CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKA 654 (966)
Q Consensus 585 ---~------d~~~~~~~~~~l~~l~-~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~ 654 (966)
+ .+.++..+.+++..++ ..+..+.++.+.++|.+...++....+ ...+.++..++.+++..+..+.+.
T Consensus 559 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~--~v~~~~~~~l~~l~~~~~~~~~~~ 636 (861)
T 2bpt_A 559 NQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSA--FIEDDVFYAISALAASLGKGFEKY 636 (861)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGG--GTHHHHHHHHHHHHHHHGGGGHHH
T ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCC--cHHHHHHHHHHHHHHHHhhhHHHH
Confidence 1 2345667788888887 445567788889999999998865321 466788889999988877666653
Q ss_pred HHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhc-CCCCCCccccchHHHHH
Q 046316 655 AYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLL-NPDLESSGSLFVGSYIL 733 (966)
Q Consensus 655 ~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL-~~~~~~~~~~~vg~Lv~ 733 (966)
+..++|.+...+ ++.+..+...+..++..++....+.+ .+++..++..+.+.+ +++.+......+...+.
T Consensus 637 -l~~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 637 -LETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDF-------RRYSDAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp -HHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGG-------HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred -HHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhc-------cchHHHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 567788888888 45667789999999999988765543 357788888777666 33322334445667777
Q ss_pred HHHHhCChhhhHhHHHHHHHHHHHHH
Q 046316 734 QLILHLPSQMAQHIRDLVAALVRRLQ 759 (966)
Q Consensus 734 ~li~~~~~~l~~~l~~iL~a~~~rL~ 759 (966)
.++.++|..+.+|++.++..++..+.
T Consensus 708 ~l~~~~~~~~~~~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 708 DIASNIGADFIPYLNDIMALCVAAQN 733 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 78888888889999999998888775
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.2e-37 Score=397.47 Aligned_cols=718 Identities=16% Similarity=0.201 Sum_probs=464.7
Q ss_pred CCHHHHHHHHHH-hcCCCHHHhHHHHHHHHhhccCc---------------------HHHHHHHHhhhccccccccccCC
Q 046316 10 QDQQWLLNCLSA-TLDPNQEVRSFAEVSLNQASLQP---------------------AAVLLKHFIKKHWQEGEESFELP 67 (966)
Q Consensus 10 ~~~~~l~~~L~~-~ls~d~~~R~~AE~~L~~~~~~p---------------------A~i~LKn~I~~~W~~~~~~~~~~ 67 (966)
++.++|.++|.+ ..+||++.|++||++|++++++| |+++|||.|+++|.
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~--------- 91 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWS--------- 91 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGG---------
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHH---------
Confidence 469999999999 66799999999999999999987 99999999999997
Q ss_pred CCChHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhccc----CchhhHhHHHHHHH
Q 046316 68 AVSSEEKEVIRKLLLSSLDD---THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQ----SNMNGVHGGLRCLA 140 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~---~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~----~~~~~~~~aL~~L~ 140 (966)
.+++++|..||+.|++.+.+ .++.||++++.+|+.|+++|||++||++++.|++.+++. .++....++|.+|.
T Consensus 92 ~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 92 DIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp GSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 68999999999999999855 469999999999999999999999999999999999751 14567889999999
Q ss_pred HHHhhccc------------cchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhh--
Q 046316 141 LLSADLDD------------AIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALM-- 206 (966)
Q Consensus 141 ~l~~~l~~------------~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~-- 206 (966)
.+++++.+ +.+....+.+++.+.+++.+... ...++..+++++.+.+. +.........-++.++
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~-~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~ 249 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS-PSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAA 249 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTC-CHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHH
T ss_pred hCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHH
Confidence 99876521 13455677888888888876532 23466777777755432 1110000000011000
Q ss_pred ---HhhhHHHHHHHHHHhcCCCCCCC-----------------------CChhhHHHHHHHHHHHHHHhcchhhHHh--h
Q 046316 207 ---MPMLKPWMNHFSIILEHPVQPED-----------------------PDDWGVKMEVLKCLNQFIQNFPSLAESE--F 258 (966)
Q Consensus 207 ---~~~l~~w~~~~~~~L~~~~~~~d-----------------------~~~~~lk~~~~~~L~~l~~~f~~~~~~~--~ 258 (966)
.+....|++.+..++..+.++.- .++....+.+++.+..+.+.+++.+... .
T Consensus 250 l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 329 (963)
T 2x19_B 250 LQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEH 329 (963)
T ss_dssp TTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccc
Confidence 12334455555555543211100 0001122233444444444444333211 1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcC---------hhHHHHHHHhH
Q 046316 259 LVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGS---------AKLVKVIASNV 329 (966)
Q Consensus 259 ~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~---------~~~~~~l~~~l 329 (966)
...+..+|+.+.. .... .+.|..+ +.+...+++||.++++. +..+..+++++
T Consensus 330 ~~~~~~~l~~ll~--------~~~~-----~~~~~~~------~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l 390 (963)
T 2x19_B 330 WQSFLALVNMIMF--------CTGI-----PGHYPVN------ETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVY 390 (963)
T ss_dssp HHHHHHHHHHHHH--------HHTC-----SSCTTTT------CGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--------HHcC-----CCCCCch------hhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 1122223332221 1110 0111211 24567789999988751 34566778999
Q ss_pred HHHHHHHHHhhcCCHHH-HHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc
Q 046316 330 RELVYHTIAFLQMTEQQ-IHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAA 408 (966)
Q Consensus 330 ~~li~~li~~~~lt~ed-~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 408 (966)
.+++..+++.|..++++ .+.|++| +.++..+.|.++.++|..++..+++.+++.+++++.+.++.+
T Consensus 391 ~~l~~~ll~~~~~p~~~~~~~~~~d-------e~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~------ 457 (963)
T 2x19_B 391 FQLVDVLLHKAQFPSDEEYGFWSSD-------EKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSS------ 457 (963)
T ss_dssp HHHHHHHHHHHSCCCHHHHHTSCHH-------HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHcCCCcccccCCChh-------HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc------
Confidence 99999988777765543 3345432 122334569999999999999999888888999888888654
Q ss_pred CCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC--hhHH
Q 046316 409 GSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS--DGVL 486 (966)
Q Consensus 409 ~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~--~~~~ 486 (966)
.+..+|+.+||+++++|++++.+.+.. .++ +..++. . ++.+. +++|.+|.++||++|+|++++. ++.+
T Consensus 458 ~~~~~w~~~eaal~al~~i~~~~~~~~----~~~-l~~l~~-~-l~~l~---~~~~~vr~~~~~~l~~~~~~l~~~~~~l 527 (963)
T 2x19_B 458 EEPYSWQHTEALLYGFQSIAETIDVNY----SDV-VPGLIG-L-IPRIS---ISNVQLADTVMFTIGALSEWLADHPVMI 527 (963)
T ss_dssp CCSCCHHHHHHHHHHHHHHTTSCCSSC----CSH-HHHHHH-H-GGGSC---CCSHHHHHHHHHHHHHTHHHHHHCHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhhcCchh----hHH-HHHHHH-H-HHhCC---CCcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 123479999999999999987643211 111 333333 2 23333 4789999999999999999853 5778
Q ss_pred HHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhh--cChhhHHHHHHHHHHHHhhc-c
Q 046316 487 EHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQ--ARDETLHLVLETLQAAIKAG-F 563 (966)
Q Consensus 487 ~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~--~~~d~l~~~le~l~~~i~~~-~ 563 (966)
..+++.++++|. +..||..||.|+..+++.. +..+.||++++++.+.++++. .+.+....++|++..++..- +
T Consensus 528 ~~vl~~l~~~l~---~~~V~~~A~~al~~l~~~~-~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~ 603 (963)
T 2x19_B 528 NSVLPLVLHALG---NPELSVSSVSTLKKICREC-KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV 603 (963)
T ss_dssp TTTHHHHHHHTT---CGGGHHHHHHHHHHHHHHT-GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHhC---CchHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence 888899998885 3689999999999999875 356889999999999999986 35578889999999988643 1
Q ss_pred -hhhcccccchHHHHHHHHhhc---CChhH---HHHHHHHHHHHHc-C----C------------------CcHHHHHHh
Q 046316 564 -LTASMEPMISPLILNIWALHV---SDPFI---SIDAIEVLEAIKC-S----P------------------GCIHQLASR 613 (966)
Q Consensus 564 -~~~~~~~~l~p~~l~l~~~~~---~d~~~---~~~~~~~l~~l~~-~----~------------------~~~~~l~~~ 613 (966)
....+...+++.+.+.|.+.. .++.. +...++|+..+.. . + ..+.++.+.
T Consensus 604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (963)
T 2x19_B 604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHH
Confidence 333455677788888887532 24433 3355666655551 1 1 235668888
Q ss_pred hhcchHhhhcCCCCC---------------------Cchhh----------------HHHHHHHHHHhh--cCCh---hH
Q 046316 614 ILPYVGPILNNPQQQ---------------------PDGLV----------------AGSLDLLTMLLK--SAST---DV 651 (966)
Q Consensus 614 ~lP~l~~~l~~~~~~---------------------~~~~~----------------~~al~ll~~l~~--~~~~---~l 651 (966)
++|.+..+++....+ ..+++ ...+.+++.+++ +..+ +.
T Consensus 684 ~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~ 763 (963)
T 2x19_B 684 VFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPP 763 (963)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHH
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHH
Confidence 999888777532110 01111 124455555555 3321 12
Q ss_pred HHHHHHHHhHHHHHHHhc--cCchHHhhhhHHHHHHHHhcCccceeeeccCCcch-HHHHHHHHHhhcCCCCCCccccch
Q 046316 652 VKAAYDVCFDAVIRIILQ--SEDHSEMQNATECLATFISGGRQLMLVWGGDSGFT-MRSLLDAASRLLNPDLESSGSLFV 728 (966)
Q Consensus 652 ~~~~~~~~fp~l~~~l~~--s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~-l~~il~i~~~lL~~~~~~~~~~~v 728 (966)
...++..++..++.++.. .+++++.+++...+..++.+.+..++. .+. +..+++.+...+.. .+-.....+
T Consensus 764 ~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~l~~-~~~~~~~~~ 837 (963)
T 2x19_B 764 IEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKAVFQCAVLALKF-PEAPTVKAS 837 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHHHHHHHHHHTTC-SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 222344555555555542 346899999999999999998888764 234 78888887776642 122333355
Q ss_pred HHHHHHHHHhCCh--h----hhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhh
Q 046316 729 GSYILQLILHLPS--Q----MAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLM 793 (966)
Q Consensus 729 g~Lv~~li~~~~~--~----l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~ 793 (966)
...+..++.+.++ . +.++.+.|+..++..+...........+..++..++.. +++.+.++|.
T Consensus 838 l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~---~~~~~~~~l~ 905 (963)
T 2x19_B 838 CGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKH---CFSLLSMWIK 905 (963)
T ss_dssp HHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHH---SHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHH---ChHHHHHHHH
Confidence 6677777766541 1 24667788888877776433222223333444444444 5665555553
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.1e-37 Score=393.85 Aligned_cols=654 Identities=14% Similarity=0.153 Sum_probs=478.5
Q ss_pred HHHHHHHHhcCCCHHHhHHHHHHHHhhccC--c----------------------HHHHHHHHhhhcccccccc--ccCC
Q 046316 14 WLLNCLSATLDPNQEVRSFAEVSLNQASLQ--P----------------------AAVLLKHFIKKHWQEGEES--FELP 67 (966)
Q Consensus 14 ~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~--p----------------------A~i~LKn~I~~~W~~~~~~--~~~~ 67 (966)
+|.++|.+++|||+++|++||++|+++..+ | |+++|||.|...|...... ..|+
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 488999999999999999999999998764 3 8999999986554321110 1133
Q ss_pred CCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCC-CCccchHHHHHHHhcccC-chhhHhHHHHHHHHHHhh
Q 046316 68 AVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWP-EDWPDLLPFLLKLITDQS-NMNGVHGGLRCLALLSAD 145 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P-~~WP~Ll~~L~~~l~s~~-~~~~~~~aL~~L~~l~~~ 145 (966)
.++++.|..||+.|+++|.+++.++ ++++.+++.|++++|| ++||++++.+++.+++++ ++..+++++.+|..++++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999998888888 9999999999999999 899999999999998743 778899999999999998
Q ss_pred ccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCC
Q 046316 146 LDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPV 225 (966)
Q Consensus 146 l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~ 225 (966)
+..+.+....+.+++.+.+.+.+.. .+..+|..|++++..++..+..... .. . .....++.+...++.
T Consensus 161 ~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~~~~~--~~---~----~~~~il~~l~~~~~~-- 228 (876)
T 1qgr_A 161 IDPEQLQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFD--KE---S----ERHFIMQVVCEATQC-- 228 (876)
T ss_dssp SCHHHHGGGHHHHHHHHHHHHSTTC-SCHHHHHHHHHHHHHHGGGCHHHHT--SH---H----HHHHHHHHHHHHTTC--
T ss_pred cCHhhHHhHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHH--hH---H----HHHHHHHHHHHHcCC--
Confidence 7666677888999999999987653 3568898899988876643221100 00 0 001234444444432
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhH-HHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHH
Q 046316 226 QPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFL-VVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSF 304 (966)
Q Consensus 226 ~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l 304 (966)
++..+|..++++|..+...+++.+.+++. .+++.++..+ . +. -+.+
T Consensus 229 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~------------~----------~~------~~~v 275 (876)
T 1qgr_A 229 -----PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM------------K----------SD------IDEV 275 (876)
T ss_dssp -----SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH------------T----------CS------SHHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------------c----------CC------chHH
Confidence 34679999999999999999999988887 6666554322 1 00 1578
Q ss_pred HHHHHHHHHHHhcChh-------------------HHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCc
Q 046316 305 VIQLFEFLLTIVGSAK-------------------LVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDEST 365 (966)
Q Consensus 305 ~~~~~efl~~~~~~~~-------------------~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~ 365 (966)
...+++||..+++... .....++++..++..++..+.-.++ |++++.
T Consensus 276 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~--------------d~~~~~ 341 (876)
T 1qgr_A 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE--------------NDDDDD 341 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCS--------------SCCTTC
T ss_pred HHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccc--------------cccccc
Confidence 8899999998875421 1112344556666666655542211 123456
Q ss_pred cchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHH
Q 046316 366 YSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLG 445 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~ 445 (966)
|++|.+|..+|..++..+++..++.+++++.+.+.. .+|+.|++++.++|.+++.+.. -.+.
T Consensus 342 ~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~----------~~~~~r~~a~~~l~~i~~~~~~--------~~~~ 403 (876)
T 1qgr_A 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN----------PDWRYRDAAVMAFGCILEGPEP--------SQLK 403 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC----------SSHHHHHHHHHHHHHTSSSSCH--------HHHH
T ss_pred cHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC----------CChHHHHHHHHHHHHHHcCCCH--------HHHH
Confidence 999999999999999999988888888887776642 3599999999999999764310 0122
Q ss_pred HHHHH---HHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC-----hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhc
Q 046316 446 ELLEQ---MITEDIGTGVHQYPFLYARIFASVARFSSAIS-----DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELL 517 (966)
Q Consensus 446 ~~l~~---~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~-----~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~ 517 (966)
+++.+ .+.+.++ ++++.+|.+|+|++|+|++.++ .+.+..+++.+++.|.+ +..||..|+.++..++
T Consensus 404 ~~~~~~l~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 404 PLVIQAMPTLIELMK---DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLA 478 (876)
T ss_dssp HHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHH
Confidence 22322 2334454 7899999999999999999854 35678889999998864 3678999999999998
Q ss_pred ccC-------------CCCCccccHHHHHHHHHHHHhhcCh---hhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHH
Q 046316 518 PKA-------------NKGNFQPQMMGLFSSLADLLHQARD---ETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIW 580 (966)
Q Consensus 518 ~~~-------------~~~~l~p~l~~il~~L~~ll~~~~~---d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~ 580 (966)
+.. ..+.+.||++.++..|++++.+.+. .....+++++..++...+ ....+...++|.+++.|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 558 (876)
T 1qgr_A 479 EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERL 558 (876)
T ss_dssp HHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHH
Confidence 752 2356899999999999999987642 455678888888876544 33345567888888888
Q ss_pred Hhh---------cCC----hhHHHHHHHHHHHHHcC-C-CcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhh
Q 046316 581 ALH---------VSD----PFISIDAIEVLEAIKCS-P-GCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLK 645 (966)
Q Consensus 581 ~~~---------~~d----~~~~~~~~~~l~~l~~~-~-~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~ 645 (966)
... ..| +.++..+..++..++.. + ..+.++.+.++|.+..++...... ......++..++.+++
T Consensus 559 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~v~~~a~~~l~~l~~ 637 (876)
T 1qgr_A 559 QQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGS-GGVQEDALMAVSTLVE 637 (876)
T ss_dssp HHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----C-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCC-CCccHHHHHHHHHHHH
Confidence 753 223 34566778889888854 6 678888999999999999865211 2456788999999998
Q ss_pred cCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCC-CCCCcc
Q 046316 646 SASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNP-DLESSG 724 (966)
Q Consensus 646 ~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~-~~~~~~ 724 (966)
..+..+.+ ++..++|.+...+...++..+.+.+..++..++...++.+ .+++..++..+.+.|+. +.+...
T Consensus 638 ~~~~~~~~-~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~~~i~~~l~~~l~~~~~~~~~ 709 (876)
T 1qgr_A 638 VLGGEFLK-YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI-------IPFCDEVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp HHGGGGGG-GHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG-------HHHHHHHHHHHHHHHTCTTSCGGG
T ss_pred HHHhhHHH-HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHhCCccccHHh
Confidence 76655554 3566788888888655577899999999999988755443 35778888888777754 233334
Q ss_pred ccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHH
Q 046316 725 SLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQ 759 (966)
Q Consensus 725 ~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~ 759 (966)
...+...+..+...+|.++.++++.++..+...+.
T Consensus 710 ~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 710 KPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHh
Confidence 44666777777778888888899999988776654
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=4.5e-38 Score=402.94 Aligned_cols=704 Identities=12% Similarity=0.138 Sum_probs=437.6
Q ss_pred cccCCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc---------------------HHHHHHHHhhhcccccccccc
Q 046316 7 AGDQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP---------------------AAVLLKHFIKKHWQEGEESFE 65 (966)
Q Consensus 7 ~~~~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p---------------------A~i~LKn~I~~~W~~~~~~~~ 65 (966)
..+++.++|.++|.++++|+++.|++||++|++++++| |+++|||.|+++|.
T Consensus 10 ~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~------- 82 (1049)
T 3m1i_C 10 SNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWK------- 82 (1049)
T ss_dssp TSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGG-------
T ss_pred CCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCc-------
Confidence 35789999999999999999999999999999999987 99999999999997
Q ss_pred CCCCChHHHHHHHHHHHHHhhhc---------hHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHH
Q 046316 66 LPAVSSEEKEVIRKLLLSSLDDT---------HRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGL 136 (966)
Q Consensus 66 ~~~i~~~~K~~IR~~Ll~~L~~~---------~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL 136 (966)
.+++++|..||+.|++.+.+. ++.||+++|.+|+.|++.|||++||++++.|++.+++ ++....++|
T Consensus 83 --~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~--~~~~~~~~l 158 (1049)
T 3m1i_C 83 --LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS--SVNVCENNM 158 (1049)
T ss_dssp --GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT--CHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc--ChHHHHHHH
Confidence 689999999999999998542 3799999999999999999999999999999999963 555667777
Q ss_pred HHHHHHHhhccc---------------cchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 046316 137 RCLALLSADLDD---------------AIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTE 201 (966)
Q Consensus 137 ~~L~~l~~~l~~---------------~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~ 201 (966)
.+|..+++++.+ +.+....+.+++.+.+++.+.. +..++..+++++.+++..+..-.-....-
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~--~~~~~~~aL~~l~~~l~wi~~~~~~~~~l 236 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS--SSSLIVATLESLLRYLHWIPYRYIYETNI 236 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTTSCTHHHHSSSH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhhCCHHHHhhhhH
Confidence 777777765431 1244456777777888886542 46788889998877654221000000000
Q ss_pred HHHhh------HhhhHHHHHHHHHHhcCCCCCCCC-ChhhHHHHHHHHHHHHHH-hcchhh------H---HhhHHHHHH
Q 046316 202 MFALM------MPMLKPWMNHFSIILEHPVQPEDP-DDWGVKMEVLKCLNQFIQ-NFPSLA------E---SEFLVVVRS 264 (966)
Q Consensus 202 ~~~~~------~~~l~~w~~~~~~~L~~~~~~~d~-~~~~lk~~~~~~L~~l~~-~f~~~~------~---~~~~~~~~~ 264 (966)
+.-++ .+....|++.+..++....++.+. -..++..+.-.++..+.. -+|... . ..-..++..
T Consensus 237 l~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~ 316 (1049)
T 3m1i_C 237 LELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQD 316 (1049)
T ss_dssp HHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHH
T ss_pred HHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHH
Confidence 11111 123445777777777653221100 011232332223332222 111100 0 000112222
Q ss_pred HHHHHHHhHHHHH-----------------HhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhc----ChhHHH
Q 046316 265 LWQTFVSSLRVYT-----------------RSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVG----SAKLVK 323 (966)
Q Consensus 265 ~~~~~~~~~~~y~-----------------~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~----~~~~~~ 323 (966)
+.+.|..++..|. ...+..+. .+ + +.+...+++||.++++ .+..+.
T Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~------~~-d------~~v~~~~lefw~~l~~~l~~~~~~~~ 383 (1049)
T 3m1i_C 317 LAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSK------IE-E------RELFKTTLDYWHNLVADLFYEPLKKH 383 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHT------SS-C------HHHHHHHHHHHHHHHHHHHHSTTCGG
T ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHc------CC-c------HHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 2222222221111 00111000 01 1 5778899999999987 455556
Q ss_pred HHHHhHHHHHHHHHHhhcCCHHHHHHHh-hCHHHHhhcccC--CccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Q 046316 324 VIASNVRELVYHTIAFLQMTEQQIHIWS-IDANQFLADEDE--STYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFN 400 (966)
Q Consensus 324 ~l~~~l~~li~~li~~~~lt~ed~e~w~-~Dp~~fv~de~d--~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~ 400 (966)
.+++++..++..+++.|+.+++ +.|. +|+.+++++..+ |.++.|.++.++|..++..++..+++.+++.+.+.++
T Consensus 384 ~~~~~l~~Lv~~ll~~m~~~ed--~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~ 461 (1049)
T 3m1i_C 384 IYEEICSQLRLVIIENMVRPEE--VLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID 461 (1049)
T ss_dssp GGHHHHHHHHHHHHHTCCCCTT--CCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCcc--eeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhC
Confidence 6788999999998999988753 3464 466666654333 4578999999999999998887777777777776654
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccc--cHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhh
Q 046316 401 ESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSV--RLGELLEQMITEDIGTGVHQYPFLYARIFASVARFS 478 (966)
Q Consensus 401 ~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~--~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~ 478 (966)
. ...+|+.+||+++++|++++.+.+...+ .+ .+.+++.+ ++++..+.+++|.+|.++||++|+|+
T Consensus 462 ~--------~~~~W~~~eaal~algsia~~~~~~~e~---~~l~~v~~~l~~--l~~~~~~~~~~~~v~~~~~~~lgry~ 528 (1049)
T 3m1i_C 462 G--------SEWSWHNINTLSWAIGSISGTMSEDTEK---RFVVTVIKDLLD--LTVKKRGKDNKAVVASDIMYVVGQYP 528 (1049)
T ss_dssp S--------SSCCHHHHHHHHHHHHHTTTSSCHHHHH---HHHHHHHHHHHH--HTTSSCSHHHHHHHHHHHHHHHHHCH
T ss_pred C--------CCCCHHHHHHHHHHHHHHhcccCchhhH---HHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHHH
Confidence 2 2346999999999999998754322110 11 12222222 12222111367888989999999999
Q ss_pred hhc--ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCC-------CCCccccHHHHHHHHHHHHhhcChhhHH
Q 046316 479 SAI--SDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKAN-------KGNFQPQMMGLFSSLADLLHQARDETLH 549 (966)
Q Consensus 479 ~~~--~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~-------~~~l~p~l~~il~~L~~ll~~~~~d~l~ 549 (966)
+++ .++.+..+++.++++|. +.+.+||..||.|+.+|++.+. ...+.||+++|++.+..++.+.+.+...
T Consensus 529 ~~~~~~~~~l~~vl~~ll~~l~-~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~ 607 (1049)
T 3m1i_C 529 RFLKAHWNFLRTVILKLFEFMH-ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 985 45788889999998886 4478999999999999998642 2344699999999999999998888889
Q ss_pred HHHHHHHHHHhhcc---hhhcccccchHHHHHHHHhhc-------C---ChhHHH---HHHHHHHHHHc-CCCcHHHHHH
Q 046316 550 LVLETLQAAIKAGF---LTASMEPMISPLILNIWALHV-------S---DPFISI---DAIEVLEAIKC-SPGCIHQLAS 612 (966)
Q Consensus 550 ~~le~l~~~i~~~~---~~~~~~~~l~p~~l~l~~~~~-------~---d~~~~~---~~~~~l~~l~~-~~~~~~~l~~ 612 (966)
.++|++..+++..+ ....+...+++.+++.|.+-. + |+.... ...+|+..++. ....+.+...
T Consensus 608 ~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~ 687 (1049)
T 3m1i_C 608 TFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG 687 (1049)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999987543 344455677788877775421 1 221111 22334444432 2333333332
Q ss_pred hhhcchHhhhcCCCCCCchhhHHHHHHHHHHh-hcCC----hhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHH
Q 046316 613 RILPYVGPILNNPQQQPDGLVAGSLDLLTMLL-KSAS----TDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFI 687 (966)
Q Consensus 613 ~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~-~~~~----~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i 687 (966)
.+++-+..+++. ..+++...+ ...+ .+... ....+.|.+.+++ ..|+
T Consensus 688 ~i~~~~l~~~~~-----------~~~~~~~~~~~~g~~~~~~p~~~-~~~~~~~~l~~ll----------------~~~~ 739 (1049)
T 3m1i_C 688 HIYYNMLQLYRA-----------VSSMISAQVAAEGLIATKTPKVR-GLRTIKKEILKLV----------------ETYI 739 (1049)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHCGGGGGSHHHH-HHHHHHHHHHHHH----------------HHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHccCchhhhhHHHH-HHHHHHHHHHHHH----------------HHHH
Confidence 222221121110 011111111 1111 11111 1233344444433 2232
Q ss_pred hcCc--cceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHH-----
Q 046316 688 SGGR--QLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQS----- 760 (966)
Q Consensus 688 ~~~~--~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~----- 760 (966)
.... +.+.. +-.++.++.+++.+.+. .+...+ ..+..++..++.++|+.+.++++.++..++.+...
T Consensus 740 ~~~~~l~~~~~--~~~~~~l~~ll~~~~~~-~~~~~~---~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~ 813 (1049)
T 3m1i_C 740 SKARNLDDVVK--VLVEPLLNAVLEDYMNN-VPDARD---AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKD 813 (1049)
T ss_dssp HHCSCHHHHHH--HTHHHHHHHHHHHHHHS-CGGGCC---THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhCCCHHHHHH--HHHHHHHHHHHHHHHhC-Cccccc---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 2210 00000 00023455566666652 122122 25778899999999887889999999988888633
Q ss_pred -hhhHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 046316 761 -AQIAGLRSSLLLIFARLVHMSAPNVEWFI 789 (966)
Q Consensus 761 -~~~~~~~~~li~vfa~l~~~~~~~~~~~l 789 (966)
.+.+.+++++...+.+++.. +|..++
T Consensus 814 ~~~~pd~~~~~f~ll~~i~~~---~~~~l~ 840 (1049)
T 3m1i_C 814 FTEYPEHRVEFYKLLKVINEK---SFAAFL 840 (1049)
T ss_dssp SSSSHHHHHHHHHHHHHHHHH---CTHHHH
T ss_pred hhhCHHHHHHHHHHHHHHHHh---CHHHHH
Confidence 23488999998888888766 555544
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-36 Score=385.09 Aligned_cols=718 Identities=12% Similarity=0.128 Sum_probs=439.2
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc---------------------HHHHHHHHhhhccccccccccCCC
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP---------------------AAVLLKHFIKKHWQEGEESFELPA 68 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p---------------------A~i~LKn~I~~~W~~~~~~~~~~~ 68 (966)
+|.++|.+++.++++||++.|++||+.|++++++| |+++|||.|+++|. .
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~---------~ 74 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWH---------E 74 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGG---------G
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHh---------h
Confidence 57888999999999999999999999999999987 99999999999997 6
Q ss_pred CChHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccC-----chhhHhHHHHHHH
Q 046316 69 VSSEEKEVIRKLLLSSLDD---THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQS-----NMNGVHGGLRCLA 140 (966)
Q Consensus 69 i~~~~K~~IR~~Ll~~L~~---~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~-----~~~~~~~aL~~L~ 140 (966)
+++++|..||+.|++.+.+ .++.||++++.+++.|+..+|| .||++++.|++.+++++ ++....++|.+|.
T Consensus 75 l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~ 153 (971)
T 2x1g_F 75 VPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLT 153 (971)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHH
Confidence 8999999999999999854 2689999999999999999999 99999999999997631 4567889999999
Q ss_pred HHHhhccc-----------cchhhhhhhHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHHHHH-----------HHh
Q 046316 141 LLSADLDD-----------AIVPKLVPVLFPVLHTIVSFPESYD-----RYVRTKALSIVYSCTAM-----------LGV 193 (966)
Q Consensus 141 ~l~~~l~~-----------~~~~~i~~~l~p~L~~i~~~~~~~~-----~~~r~~al~i~~~~~~~-----------l~~ 193 (966)
.+++++.. +.+....+.+++.+.+++......+ ..++..+++++.+.+.. +..
T Consensus 154 ~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~ 233 (971)
T 2x1g_F 154 AIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAV 233 (971)
T ss_dssp HHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHH
T ss_pred HhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHH
Confidence 88876321 1233445666666666665332111 25777788888765541 111
Q ss_pred hhcc------------------chhHH--------------------HHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhH
Q 046316 194 MSGV------------------CKTEM--------------------FALMMPMLKPWMNHFSIILEHPVQPEDPDDWGV 235 (966)
Q Consensus 194 ~~~~------------------~~~~~--------------------~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~l 235 (966)
+... ...+. ...+...++..++....+... ....|.+.-..
T Consensus 234 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~d~~~~~~ 312 (971)
T 2x1g_F 234 LLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKT-EWKRENDNEDI 312 (971)
T ss_dssp HHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHH-HSSSSCSCSHH
T ss_pred HHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHH-HhcccccchHH
Confidence 1100 00000 011111222222211111100 00011100135
Q ss_pred HHHHHHHHHHHHHhcchhhH----H----hhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHH
Q 046316 236 KMEVLKCLNQFIQNFPSLAE----S----EFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQ 307 (966)
Q Consensus 236 k~~~~~~L~~l~~~f~~~~~----~----~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~ 307 (966)
...+++.+..+.+.+++.+. + ..+.+...++.++. ..... +.+..+ +.+...
T Consensus 313 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~---------~~~~~-----~~~~~~------~~v~~~ 372 (971)
T 2x1g_F 313 IVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILH---------CTDKP-----GIYPVE------ESCSTM 372 (971)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHH---------HHHCS-----SCTTTT------CTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHH---------HHcCC-----CCCCcc------hhhhHH
Confidence 55667777777777666544 1 11111111111111 11000 001101 457789
Q ss_pred HHHHHHHHhc----------ChhHHHHHHHhHHHHHHHHHHhhcCCHHH-HHHHhhCHHHHhhcccCCccchhhHHHHHH
Q 046316 308 LFEFLLTIVG----------SAKLVKVIASNVRELVYHTIAFLQMTEQQ-IHIWSIDANQFLADEDESTYSCRVSGALLL 376 (966)
Q Consensus 308 ~~efl~~~~~----------~~~~~~~l~~~l~~li~~li~~~~lt~ed-~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL 376 (966)
+++||.++++ .+..+..+++++..++..++..+..++++ .+.| |+++ .+++.+.|.++.++|
T Consensus 373 ~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~--d~~e-----~~~f~~~R~~~~~~l 445 (971)
T 2x1g_F 373 ALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW--SSDD-----LECFRCYRQDISDTF 445 (971)
T ss_dssp HHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS--CHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc--CHhH-----HHHHHHHHHHHHHHH
Confidence 9999988754 13345667889999999998666654432 2333 3332 234578999999999
Q ss_pred HHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhh
Q 046316 377 EEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDI 456 (966)
Q Consensus 377 ~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l 456 (966)
..++..+++.+++.+++++.+.++.+.. +..+|+.+||+++++|++++++.+... -.++.++. +++.+
T Consensus 446 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~-----~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~--~l~~l 513 (971)
T 2x1g_F 446 MYCYDVLNDYILEILAAMLDEAIADLQR-----HPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMR--VLAEI 513 (971)
T ss_dssp HHHHTTCTTHHHHHHHHHHHHHHHHHHH-----CTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHH--HHHHS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccC-----CCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHH--HHHhc
Confidence 9999999988899999999998876542 234699999999999999987654321 12555555 44555
Q ss_pred cCCCCCChhHHHHHHHHHHHhhhhcC--hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHH
Q 046316 457 GTGVHQYPFLYARIFASVARFSSAIS--DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFS 534 (966)
Q Consensus 457 ~~~~~~~~~Lr~Ra~~~l~~f~~~~~--~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~ 534 (966)
.. .+.+|.+|.++||++|+|++++. ++++..+++.++++|. ++|+..||.|+..|++.. +..+.||++++++
T Consensus 514 ~~-~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~----~~v~~~A~~al~~l~~~~-~~~l~p~~~~ll~ 587 (971)
T 2x1g_F 514 PY-EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN----SSMSAQATLGLKELCRDC-QLQLKPYADPLLN 587 (971)
T ss_dssp CT-TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHC-HHHHHHHHHHHHH
T ss_pred Cc-cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHH-HHhccccHHHHHH
Confidence 41 13599999999999999999864 4678888999998882 689999999999999875 3568899999999
Q ss_pred HHHHHHhh--cChhhHHHHHHHHHHHHhhcc--hhhcccccchHHHHHHHHhhcCC----hhHHH---HHHHHHHHHHcC
Q 046316 535 SLADLLHQ--ARDETLHLVLETLQAAIKAGF--LTASMEPMISPLILNIWALHVSD----PFISI---DAIEVLEAIKCS 603 (966)
Q Consensus 535 ~L~~ll~~--~~~d~l~~~le~l~~~i~~~~--~~~~~~~~l~p~~l~l~~~~~~d----~~~~~---~~~~~l~~l~~~ 603 (966)
.+.++++. .+.+....+++++..++..-+ ....+...+++.+++.|.+...+ +..+. ..++++..+...
T Consensus 588 ~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~ 667 (971)
T 2x1g_F 588 ACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSS 667 (971)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhh
Confidence 99999987 566788999999999987421 22333445667777776654332 22233 333444333311
Q ss_pred --------------CCcHHHHHHhhhcchHhhhcCCCCCCchhhHH----------------------------------
Q 046316 604 --------------PGCIHQLASRILPYVGPILNNPQQQPDGLVAG---------------------------------- 635 (966)
Q Consensus 604 --------------~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~---------------------------------- 635 (966)
+..+.++.+.++|++..+++.... ..++++.
T Consensus 668 l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~ 746 (971)
T 2x1g_F 668 LNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVE-EIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR 746 (971)
T ss_dssp HTC-------------CCHHHHHTTHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--
T ss_pred cCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC
Confidence 234567788888888877753211 1122222
Q ss_pred ----HHHHHHHHhhcCChh--H---HHHHHHHHhHHHHHHHhcc------CchHHhhhhHHHHHHHHhcCccceeeeccC
Q 046316 636 ----SLDLLTMLLKSASTD--V---VKAAYDVCFDAVIRIILQS------EDHSEMQNATECLATFISGGRQLMLVWGGD 700 (966)
Q Consensus 636 ----al~ll~~l~~~~~~~--l---~~~~~~~~fp~l~~~l~~s------~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~ 700 (966)
.+++++.+++..+.. . ...++..++..++.++... +++++.++....+..++.+.+..++.
T Consensus 747 ~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~---- 822 (971)
T 2x1g_F 747 CCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED---- 822 (971)
T ss_dssp CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC----
T ss_pred CchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC----
Confidence 344455555433221 1 1112333334444444322 36788899999999999999988874
Q ss_pred Ccch-HHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhC--ChhhhH----hHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 046316 701 SGFT-MRSLLDAASRLLNPDLESSGSLFVGSYILQLILHL--PSQMAQ----HIRDLVAALVRRLQSAQIAGLRSSLLLI 773 (966)
Q Consensus 701 ~~~~-l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~--~~~l~~----~l~~iL~a~~~rL~~~~~~~~~~~li~v 773 (966)
.+. +..+++....-|... +-.+...++.....++..- +..+.+ +.+.++..++..+...-..+....+..+
T Consensus 823 -s~~~l~~i~~~~~~~l~~~-~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~ 900 (971)
T 2x1g_F 823 -KTLAYDRLVFYAQRGMTLP-ESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADI 900 (971)
T ss_dssp -TTSCHHHHHHHHHHHHTSS-CSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHH
T ss_pred -CcccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHH
Confidence 345 788888777655432 1122234555555555442 222344 4445555555554433234444566677
Q ss_pred HHHHHhhcCCCHHHHHHHhh
Q 046316 774 FARLVHMSAPNVEWFINMLM 793 (966)
Q Consensus 774 fa~l~~~~~~~~~~~l~~L~ 793 (966)
+.+++.. +|+.+.+.|.
T Consensus 901 l~~l~~~---~~~~~~~~l~ 917 (971)
T 2x1g_F 901 LLAMNRK---YAAEMAVWMK 917 (971)
T ss_dssp HHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHH---CcHHHHHHHH
Confidence 7777776 6777777664
No 8
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.6e-31 Score=334.41 Aligned_cols=702 Identities=13% Similarity=0.168 Sum_probs=419.6
Q ss_pred ccCCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc---------------------HHHHHHHHhhhccccccccccC
Q 046316 8 GDQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP---------------------AAVLLKHFIKKHWQEGEESFEL 66 (966)
Q Consensus 8 ~~~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p---------------------A~i~LKn~I~~~W~~~~~~~~~ 66 (966)
.++|++.|.+++...++|+++.|++|++.|++++++| |+++|||.|+++|.
T Consensus 11 ~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~-------- 82 (1023)
T 4hat_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWK-------- 82 (1023)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGG--------
T ss_pred CCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh--------
Confidence 4799999999999999999999999999999999987 99999999999997
Q ss_pred CCCChHHHHHHHHHHHHHhhh----c-----hHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHH
Q 046316 67 PAVSSEEKEVIRKLLLSSLDD----T-----HRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLR 137 (966)
Q Consensus 67 ~~i~~~~K~~IR~~Ll~~L~~----~-----~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~ 137 (966)
.+++++|..||+.|++.+.. + ++-|++.+|.+++.|+..|||+.||++++.+++.+++ ++..+..+|.
T Consensus 83 -~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~--~~~~~~~~L~ 159 (1023)
T 4hat_C 83 -LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS--SVNVCENNMI 159 (1023)
T ss_dssp -GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT--CHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC--CHHHHHHHHH
Confidence 69999999999999998732 1 4678888999999999999999999999999999975 4567888999
Q ss_pred HHHHHHhhcc---cc------------chhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHh--hhccchh
Q 046316 138 CLALLSADLD---DA------------IVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGV--MSGVCKT 200 (966)
Q Consensus 138 ~L~~l~~~l~---~~------------~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~--~~~~~~~ 200 (966)
+|..+.+++. ++ .+..-.+.+++.+.+++.+.. +..+...+++++.+++.-+.. +.. ..
T Consensus 160 iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~--~~~l~~~~L~~l~s~l~WI~i~~i~~--~~ 235 (1023)
T 4hat_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA--SSSLIVATLESLLRYLHWIPYRYIYE--TN 235 (1023)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTTSCTHHHHS--SS
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhCCHHHhcc--hh
Confidence 9988888742 11 134456777777777776543 345566677777665431100 000 00
Q ss_pred HHHHhh------HhhhHHHHHHHHHHhcCCCCCCCCChhh-HHHHHH-HHHHHH-HHhcchh--hHHh-------hHHHH
Q 046316 201 EMFALM------MPMLKPWMNHFSIILEHPVQPEDPDDWG-VKMEVL-KCLNQF-IQNFPSL--AESE-------FLVVV 262 (966)
Q Consensus 201 ~~~~~~------~~~l~~w~~~~~~~L~~~~~~~d~~~~~-lk~~~~-~~L~~l-~~~f~~~--~~~~-------~~~~~ 262 (966)
-+..++ .+....-++.+..++....++ +...+. .-..++ +.+..+ ..-+|.. +.+. =..++
T Consensus 236 ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~-~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~ 314 (1023)
T 4hat_C 236 ILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQ-DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFL 314 (1023)
T ss_dssp HHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCS-SCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHccccCC-chHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHH
Confidence 000000 011112233333333211100 000010 000000 111111 1111110 0000 02233
Q ss_pred HHHHHHHHHhHHHHHHhhccCCCCCCC------------CCcCCCCCccchHHHHHHHHHHHHHHhcC----hhHHHHHH
Q 046316 263 RSLWQTFVSSLRVYTRSSIEGTEDPYA------------GRYDSDGAEKSLDSFVIQLFEFLLTIVGS----AKLVKVIA 326 (966)
Q Consensus 263 ~~~~~~~~~~~~~y~~~~i~~~~~~~~------------~~~d~~g~~~~~~~l~~~~~efl~~~~~~----~~~~~~l~ 326 (966)
..+...|..+.+.|.. .+....+..+ ...+ | .++...+++||..+.+. +..+..++
T Consensus 315 ~~l~~l~~~~~e~~~~-li~~~~~~~~~l~~~l~~Ll~~~~~~-d------~ei~~~tl~FW~~L~~~l~~e~~~~~~~~ 386 (1023)
T 4hat_C 315 QDLAMFLTTYLARNRA-LLESDESLRELLLNAHQYLIQLSKIE-E------RELFKTTLDYWHNLVADLFYEPLKKHIYE 386 (1023)
T ss_dssp HHHHHHHHHHHHHHGG-GGTSCGGGHHHHHHHHHHHHHHTTSS-C------HHHHHHHHHHHHHHHHHHTTSTTTGGGGH
T ss_pred HHHHHHHHHHHHHHHH-HHhCCcchhHHHHHHHHHHHHhhCCC-c------HHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 4444444444444421 1111000000 0011 1 46778899999988642 11234567
Q ss_pred HhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhc----ccC-C-ccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Q 046316 327 SNVRELVYHTIAFLQMTEQQIHIWSIDANQFLAD----EDE-S-TYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFN 400 (966)
Q Consensus 327 ~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~d----e~d-~-~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~ 400 (966)
|.+..++..++..|+.+++.. .+++|-.+++++ -++ + +.+.| ++|..+..-.+.++++.+++.+.+.+.
T Consensus 387 ~~~~~L~~vli~km~~P~e~~-ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~ 461 (1023)
T 4hat_C 387 EICSQLRLVIIENMVRPEEVL-VVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQID 461 (1023)
T ss_dssp HHHHHHHHHHHHSCCCCTTCC-EEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCcccc-cCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 888899999999999987432 223332223221 111 1 23556 778777777666666666666555443
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcC-----CCCCChhHHHHHHHHHH
Q 046316 401 ESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGT-----GVHQYPFLYARIFASVA 475 (966)
Q Consensus 401 ~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~-----~~~~~~~Lr~Ra~~~l~ 475 (966)
. +...|+.+||+++++|++++.+.+.. ..+++.+++...++. +.++.+.+|..+||++|
T Consensus 462 ~--------~~~~W~~~EA~~~a~gaIa~~~~~~~--------e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG 525 (1023)
T 4hat_C 462 G--------SEWSWHNINTLSWAIGSISGTMSEDT--------EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG 525 (1023)
T ss_dssp S--------TTCCHHHHHHHHHHHHHTTTSSCHHH--------HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred C--------CCCCHHHHHHHHHHHHHHHcCCCchh--------HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH
Confidence 2 22369999999999999987653221 122233333222221 11355677888999999
Q ss_pred Hhhhhc--ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCC-------CCCccccHHHHHHHHHHHHhhcChh
Q 046316 476 RFSSAI--SDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKAN-------KGNFQPQMMGLFSSLADLLHQARDE 546 (966)
Q Consensus 476 ~f~~~~--~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~-------~~~l~p~l~~il~~L~~ll~~~~~d 546 (966)
||++++ .++.+...++.++.+|. +..+.|+..||.|+..+|+.+. .....||++++++.+.+.....+.+
T Consensus 526 ry~~wl~~~~~~L~~vl~~L~~~l~-~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~ 604 (1023)
T 4hat_C 526 QYPRFLKAHWNFLRTVILKLFEFMH-ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQ 604 (1023)
T ss_dssp TCHHHHHHCHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHH
Confidence 999986 46888899999999986 3356799999999999998642 2355799999999999999988888
Q ss_pred hHHHHHHHHHHHHhhcc---hhhcccccchHHHHHHHHhhc----CChh---------HHHHHHHHHHHHHcC-CCcHHH
Q 046316 547 TLHLVLETLQAAIKAGF---LTASMEPMISPLILNIWALHV----SDPF---------ISIDAIEVLEAIKCS-PGCIHQ 609 (966)
Q Consensus 547 ~l~~~le~l~~~i~~~~---~~~~~~~~l~p~~l~l~~~~~----~d~~---------~~~~~~~~l~~l~~~-~~~~~~ 609 (966)
....+.|++..+++.-+ ....+...+++...+.|.+-. .+|. ......+|+.++++. +..|.+
T Consensus 605 ~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~ 684 (1023)
T 4hat_C 605 QVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYP 684 (1023)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence 88999999999998754 344555677888888886532 1221 011222333333311 111111
Q ss_pred H---------------------------------------------------------------HHhhhcchHh-hhcCC
Q 046316 610 L---------------------------------------------------------------ASRILPYVGP-ILNNP 625 (966)
Q Consensus 610 l---------------------------------------------------------------~~~~lP~l~~-~l~~~ 625 (966)
. .+.++|.+.. ++...
T Consensus 685 ~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY 764 (1023)
T 4hat_C 685 QLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDY 764 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHH
Confidence 1 1122222211 12110
Q ss_pred CCCCch--hhHHHHHHHHHHhhcCCh---hHHHHHHHHHhHHHHHHHhc--cCchHHhhhhHHHHHHHHhcCccceeeec
Q 046316 626 QQQPDG--LVAGSLDLLTMLLKSAST---DVVKAAYDVCFDAVIRIILQ--SEDHSEMQNATECLATFISGGRQLMLVWG 698 (966)
Q Consensus 626 ~~~~~~--~~~~al~ll~~l~~~~~~---~l~~~~~~~~fp~l~~~l~~--s~d~~~lq~~~~~l~~~i~~~~~~~~~~~ 698 (966)
.. ..+ --...|.+.+++++..+. +..+.+++.+|.+-++++.+ .+-++...+....+++++.+++..|++.
T Consensus 765 ~~-~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~- 842 (1023)
T 4hat_C 765 MN-NVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLEL- 842 (1023)
T ss_dssp HH-SCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTS-
T ss_pred Hh-CChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcC-
Confidence 00 001 114567888888866542 22333567777777777754 4568889999999999999999888752
Q ss_pred cCCcchHHHHHHHHHhhc---CCCCCCccccchHHHHHHHHHhCCh----h-----hhHhHHHHHHHHHHHHHHhhh
Q 046316 699 GDSGFTMRSLLDAASRLL---NPDLESSGSLFVGSYILQLILHLPS----Q-----MAQHIRDLVAALVRRLQSAQI 763 (966)
Q Consensus 699 ~~~~~~l~~il~i~~~lL---~~~~~~~~~~~vg~Lv~~li~~~~~----~-----l~~~l~~iL~a~~~rL~~~~~ 763 (966)
..+....+++.+.--. .++.++++ -+++..++.++.+ + ...|.-.|++-++.-+..+-.
T Consensus 843 --~~~~~~~~~~~~~~a~~h~~r~~~~~~----l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h 913 (1023)
T 4hat_C 843 --PPAAFKLFVDAICWAFKHNNRDVEVNG----LQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDH 913 (1023)
T ss_dssp --CHHHHHHHHHHHHHHHTCCCHHHHHHH----HHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred --CHHHHHHHHHHHHHHcCCCchHHHHHH----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 1235555666433212 22223333 3444445544332 1 135666677777776665443
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.98 E-value=1.7e-31 Score=311.38 Aligned_cols=407 Identities=15% Similarity=0.218 Sum_probs=301.0
Q ss_pred HHHHHHHHhcCCCHHHhHHHHHHHHhhccC--c----------------------HHHHHHHHhhhccccccccc--cCC
Q 046316 14 WLLNCLSATLDPNQEVRSFAEVSLNQASLQ--P----------------------AAVLLKHFIKKHWQEGEESF--ELP 67 (966)
Q Consensus 14 ~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~--p----------------------A~i~LKn~I~~~W~~~~~~~--~~~ 67 (966)
+|.++|.+++|||+++|++||++|++++.+ | |+++|||+|+++|+...+.+ .|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 488999999999999999999999998872 3 89999999999998654432 245
Q ss_pred CCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCC-CccchHHHHHHHhcccC-chhhHhHHHHHHHHHHhh
Q 046316 68 AVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPE-DWPDLLPFLLKLITDQS-NMNGVHGGLRCLALLSAD 145 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~-~WP~Ll~~L~~~l~s~~-~~~~~~~aL~~L~~l~~~ 145 (966)
.++++.|..||+.|++.|.++++++ ++++.+|+.||+++||+ .||+++|.|++.+++++ ++..+++|+.+|..++++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999998888889 99999999999999995 99999999999998742 778899999999999998
Q ss_pred ccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCC
Q 046316 146 LDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPV 225 (966)
Q Consensus 146 l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~ 225 (966)
...+.+....+.+++.+.+.+.+.. .+..+|..|++++..++..+..... . ..+.++ .++.+...+..
T Consensus 161 ~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~~~~~--~----~~~~~~---l~~~l~~~~~~-- 228 (462)
T 1ibr_B 161 IDPEQLQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFD--K----ESERHF---IMQVVCEATQC-- 228 (462)
T ss_dssp SCGGGTGGGHHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHTTTTHHHHT--S----HHHHHH---HHHHHHHHTTC--
T ss_pred CCchhhHhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHhhh--h----hHHHHH---HHHHHHHhcCC--
Confidence 7655677788889999999998653 2578999999988877643221100 0 001111 13333333322
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhH-HHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHH
Q 046316 226 QPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFL-VVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSF 304 (966)
Q Consensus 226 ~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l 304 (966)
.+..+|.+++++|..+...+++.+.+++. .+++.+...+ . +. -+.+
T Consensus 229 -----~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~------------~----------~~------~~~v 275 (462)
T 1ibr_B 229 -----PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM------------K----------SD------IDEV 275 (462)
T ss_dssp -----SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH------------H----------CS------SHHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------c----------CC------chHH
Confidence 34579999999999999999998888887 6665433221 1 00 1578
Q ss_pred HHHHHHHHHHHhcCh-------------------hHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCc
Q 046316 305 VIQLFEFLLTIVGSA-------------------KLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDEST 365 (966)
Q Consensus 305 ~~~~~efl~~~~~~~-------------------~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~ 365 (966)
+..+++||..+++.. ..+..++++++.++..++..+.-.++ |.+++.
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~--------------d~~~~~ 341 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE--------------NDDDDD 341 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCS--------------SCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccc--------------cccccc
Confidence 899999999987542 11223455666677666655432111 123356
Q ss_pred cchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHH
Q 046316 366 YSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLG 445 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~ 445 (966)
|++|.+|.++|..++..+++..++.+++++.+.+++ .+|+.|+|+++++|++++++.. +...++ +.
T Consensus 342 ~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~----------~~~~~r~aal~~l~~l~~~~~~---~~~~~~-l~ 407 (462)
T 1ibr_B 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN----------PDWRYRDAAVMAFGCILEGPEP---SQLKPL-VI 407 (462)
T ss_dssp CSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC----------SSHHHHHHHHHHHHHTSSSSCT---TTTCTT-TT
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHHHHhcCCcH---HHHHHH-HH
Confidence 999999999999999999988888888888877753 3599999999999999864310 000111 22
Q ss_pred HHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh-----hHHHHHHHHHHhhhc
Q 046316 446 ELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD-----GVLEHFLSAAITTIA 498 (966)
Q Consensus 446 ~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~-----~~~~~~l~~~~~~L~ 498 (966)
.++ ..+.+.++ ++++.+|.+|+|++|+|++.+.+ +.+..+++.++++|.
T Consensus 408 ~~~-~~l~~~l~---d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 408 QAM-PTLIELMK---DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp THH-HHHHHGGG---CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHH-HHHHHHhc---CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 223 34555666 78999999999999999998643 467777777776653
No 10
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.97 E-value=8e-28 Score=298.92 Aligned_cols=688 Identities=12% Similarity=0.186 Sum_probs=407.8
Q ss_pred ccCCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc---------------------HHHHHHHHhhhccccccccccC
Q 046316 8 GDQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP---------------------AAVLLKHFIKKHWQEGEESFEL 66 (966)
Q Consensus 8 ~~~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p---------------------A~i~LKn~I~~~W~~~~~~~~~ 66 (966)
.++|.+.|.+++.+.++|+++.|++|++.|++++++| |+..||+.|+++|.
T Consensus 23 ~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~-------- 94 (1073)
T 3gjx_A 23 QKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWK-------- 94 (1073)
T ss_dssp CCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGG--------
T ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh--------
Confidence 3689999999999999999999999999999999987 99999999999997
Q ss_pred CCCChHHHHHHHHHHHHHhhh---------chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHH
Q 046316 67 PAVSSEEKEVIRKLLLSSLDD---------THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLR 137 (966)
Q Consensus 67 ~~i~~~~K~~IR~~Ll~~L~~---------~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~ 137 (966)
.+++++|..||+.|++.+.. .++.+++++|.+++.|+..+||+.||++++.+++.+++ ++..+..+|+
T Consensus 95 -~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~--~~~~~~~~L~ 171 (1073)
T 3gjx_A 95 -ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT--SESLCQNNMV 171 (1073)
T ss_dssp -GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH--CHHHHHHHHH
T ss_pred -hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC--CHHHHHHHHH
Confidence 68999999999999998732 24788999999999999999999999999999999864 4567889999
Q ss_pred HHHHHHhhccc---------------cchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH-----------
Q 046316 138 CLALLSADLDD---------------AIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAML----------- 191 (966)
Q Consensus 138 ~L~~l~~~l~~---------------~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l----------- 191 (966)
+|..+.+++.+ +.+....+.+++.+..++.+.. +..+...+++++.+++.-+
T Consensus 172 IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~--~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll 249 (1073)
T 3gjx_A 172 ILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ--NAPLVHATLETLLRFLNWIPLGYIFETKLI 249 (1073)
T ss_dssp HHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTTSCTHHHHSSSHH
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHhcCHHHhccchHH
Confidence 99999887421 1234445667777777775442 3444445555554332110
Q ss_pred Hhh----hccc--hhHHHHhh---------------HhhhHHHHHHHHHHhcCCCC------CCCCChhhHHHHHHHHHH
Q 046316 192 GVM----SGVC--KTEMFALM---------------MPMLKPWMNHFSIILEHPVQ------PEDPDDWGVKMEVLKCLN 244 (966)
Q Consensus 192 ~~~----~~~~--~~~~~~~~---------------~~~l~~w~~~~~~~L~~~~~------~~d~~~~~lk~~~~~~L~ 244 (966)
..+ .... ....-+++ ...+...|+.+..++..... ..+.++ ...++.+.
T Consensus 250 ~~L~~~~L~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d----~e~~~~l~ 325 (1073)
T 3gjx_A 250 STLIYKFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDE----QNFIQNLS 325 (1073)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTH----HHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhh----HHHHHHHH
Confidence 000 0000 00000111 11111112222222211000 000011 12233333
Q ss_pred HHHHhcch----hhHH--hhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcC
Q 046316 245 QFIQNFPS----LAES--EFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGS 318 (966)
Q Consensus 245 ~l~~~f~~----~~~~--~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~ 318 (966)
+++..|.+ .+.. .....+....+ |. ..+.. .+ | .++...+|+||..+...
T Consensus 326 ~~f~~~~e~~~~lIe~~p~~~~~l~~~l~--------~l-l~~s~--------~~-d------~ei~kitf~fW~~L~~~ 381 (1073)
T 3gjx_A 326 LFLCTFLKEHGQLLEKRLNLREALMEALH--------YM-LLVSE--------VE-E------TEIFKICLEYWNHLAAE 381 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHH--------HH-HHHTT--------CS-C------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHHH--------HH-HHHhC--------CC-c------HHHHHHHHHHHHHHHHH
Confidence 33333332 2111 11111111111 10 01111 11 1 56888899999877421
Q ss_pred -----------------------hhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCC--ccchhhHHH
Q 046316 319 -----------------------AKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDES--TYSCRVSGA 373 (966)
Q Consensus 319 -----------------------~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~--~~s~R~aa~ 373 (966)
+..+..+++.+..+...+|..|..++|-.- =++|..+++++...+ .-+.+.+..
T Consensus 382 L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i-~e~e~ge~~re~~~d~~~~~ly~~mr 460 (1073)
T 3gjx_A 382 LYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLV-VENDQGEVVREFMKDTDSINLYKNMR 460 (1073)
T ss_dssp HHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEE-EECSSSCEEEEECSSCHHHHHHHHHH
T ss_pred HHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccc-cCcccchHHHHHHhhcchHHHHHHHH
Confidence 112334577888888888888887764321 123333444432222 234566666
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHh
Q 046316 374 LLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMIT 453 (966)
Q Consensus 374 ~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~ 453 (966)
++|..+..-.+.++...+++.+.+.++ ++...|+..||+++++|+++..+.+..+ ..++.+++.
T Consensus 461 d~L~~lt~l~~~~~~~i~~~~l~~~~~--------~~~~sW~~lea~~~aigaIag~~~~~~E--------~~~Lp~vi~ 524 (1073)
T 3gjx_A 461 ETLVYLTHLDYVDTEIIMTKKLQNQVN--------GTEWSWKNLNTLCWAIGSISGAMHEEDE--------KRFLVTVIK 524 (1073)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHT--------SCCCCHHHHHHHHHHHHHTTTSSCHHHH--------HHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhc--------CCCCCHHHHhHHHHHHHHHHCcCCcccc--------cchHHHHHH
Confidence 777666654445555555555544332 2333599999999999999854322111 122333332
Q ss_pred hhhcC-----CCCCChhHHHHHHHHHHHhhhhc--ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCC----
Q 046316 454 EDIGT-----GVHQYPFLYARIFASVARFSSAI--SDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANK---- 522 (966)
Q Consensus 454 ~~l~~-----~~~~~~~Lr~Ra~~~l~~f~~~~--~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~---- 522 (966)
-.++. +.+..+.+++.+||++|||.+++ .++.+...+..++.++. +.+..|+.+||.|+..+|+.+.+
T Consensus 525 ~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~-~~~~~vq~aA~~af~~i~~~C~~~lv~ 603 (1073)
T 3gjx_A 525 DLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH-ETHDGVQDMACDTFIKIAQKCRRHFVQ 603 (1073)
T ss_dssp HHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTT-CCSTTHHHHHHHHHHHHHHHTGGGGTS
T ss_pred HHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22220 11224578888999999999996 46888888999998876 44789999999999999987532
Q ss_pred ---CCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc---hhhcccccchHHHHHHHHhhc----------CC
Q 046316 523 ---GNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF---LTASMEPMISPLILNIWALHV----------SD 586 (966)
Q Consensus 523 ---~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~---~~~~~~~~l~p~~l~l~~~~~----------~d 586 (966)
....||+.+|++.+.......+.+....+.|++..+++.-+ ..+.+...+++...+.|.+-. .|
T Consensus 604 ~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d 683 (1073)
T 3gjx_A 604 VQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKD 683 (1073)
T ss_dssp CCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred ccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccC
Confidence 34578999999999999999999999999999999988765 235556677787777775533 24
Q ss_pred hhH---HHHHHHHHHHHHcC-CC---------------------------------------------------------
Q 046316 587 PFI---SIDAIEVLEAIKCS-PG--------------------------------------------------------- 605 (966)
Q Consensus 587 ~~~---~~~~~~~l~~l~~~-~~--------------------------------------------------------- 605 (966)
+.. ...+.+|..++++. +.
T Consensus 684 ~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~ 763 (1073)
T 3gjx_A 684 PETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISG 763 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHH
Confidence 421 01112222222211 11
Q ss_pred ------cHHHHHHhhhcchHhhh-cCCCC-CCchhhHHHHHHHHHHhhcCC----hhHHHHHHHHHhHHHHHHHhc--cC
Q 046316 606 ------CIHQLASRILPYVGPIL-NNPQQ-QPDGLVAGSLDLLTMLLKSAS----TDVVKAAYDVCFDAVIRIILQ--SE 671 (966)
Q Consensus 606 ------~~~~l~~~~lP~l~~~l-~~~~~-~~~~~~~~al~ll~~l~~~~~----~~l~~~~~~~~fp~l~~~l~~--s~ 671 (966)
....+.+.++|.+...+ ..... ....--.+.|.+.++++++.+ +.++. +++.+|.+-++++.+ .+
T Consensus 764 ~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~-il~~vf~~Tl~mi~~~f~~ 842 (1073)
T 3gjx_A 764 WVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQ-IFDAVFECTLNMINKDFEE 842 (1073)
T ss_dssp HHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHH-HHHHHHHHHHHHHSSCSSS
T ss_pred HHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHhCCccc
Confidence 11112223333322221 10000 000111356778888886543 34443 567777777777753 44
Q ss_pred chHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHH-hh--cCCCCCCccccchHHHHHHHHHhCCh------h
Q 046316 672 DHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAAS-RL--LNPDLESSGSLFVGSYILQLILHLPS------Q 742 (966)
Q Consensus 672 d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~-~l--L~~~~~~~~~~~vg~Lv~~li~~~~~------~ 742 (966)
-++...+....+++++.++...|++- ..+....+++-+- .+ -.+++.++ +-+++..++.++.. .
T Consensus 843 ~Pe~r~~ff~ll~~~~~~~f~~l~~l---~~~~~~~~i~~i~wa~kh~~r~i~~~----~l~~~~~ll~~~~~~~~~~~~ 915 (1073)
T 3gjx_A 843 YPEHRTNFFLLLQAVNSHCFPAFLAI---PPAQFKLVLDSIIWAFKHTMRNVADT----GLQILFTLLQNVAQEEAAAQS 915 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGTTTS---CHHHHHHHHHHHHHHHTCSSHHHHHH----HHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHHcCCCChhHHHH----HHHHHHHHHHHhhcChHHHHH
Confidence 58889999999999999999888752 1234445554333 22 12222222 22455555555432 1
Q ss_pred -hhHhHHHHHHHHHHHHHHhh
Q 046316 743 -MAQHIRDLVAALVRRLQSAQ 762 (966)
Q Consensus 743 -l~~~l~~iL~a~~~rL~~~~ 762 (966)
...|.-.|++-++.-+...-
T Consensus 916 F~~~~~~~~~~~i~~v~td~~ 936 (1073)
T 3gjx_A 916 FYQTYFCDILQHIFSVVTDTS 936 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 13455566666666555433
No 11
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.97 E-value=7.8e-28 Score=301.27 Aligned_cols=718 Identities=15% Similarity=0.145 Sum_probs=434.6
Q ss_pred cCCHHHHHHHHHHhcCC--CHHHhHHHHHHHHhhccCc-----------------------HHHHHHHHhhhcccccccc
Q 046316 9 DQDQQWLLNCLSATLDP--NQEVRSFAEVSLNQASLQP-----------------------AAVLLKHFIKKHWQEGEES 63 (966)
Q Consensus 9 ~~~~~~l~~~L~~~ls~--d~~~R~~AE~~L~~~~~~p-----------------------A~i~LKn~I~~~W~~~~~~ 63 (966)
|||.+++.+++..+++| |++.|++|++.|++++++| |+.+||+.|+
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~--------- 72 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR--------- 72 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH---------
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---------
Confidence 78999999999999998 6999999999999999987 8889999998
Q ss_pred ccCCCCChH----HHHHHHHHHHHHhhh-----chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCch-hhHh
Q 046316 64 FELPAVSSE----EKEVIRKLLLSSLDD-----THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNM-NGVH 133 (966)
Q Consensus 64 ~~~~~i~~~----~K~~IR~~Ll~~L~~-----~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~-~~~~ 133 (966)
.++++ +|..||+.|+..+.. .++.||+++|.+++.|+..+||+.||++++.+++.++++ +. ..+.
T Consensus 73 ----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~ 147 (980)
T 3ibv_A 73 ----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS-SQSEFSN 147 (980)
T ss_dssp ----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH-CCHHHHH
T ss_pred ----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC-ChhHHHH
Confidence 15777 899999999999753 468999999999999999999999999999999999874 44 4566
Q ss_pred HHHHHHHHHHhhcccc-----------------chhh-hhhhHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHHHHHHHhh
Q 046316 134 GGLRCLALLSADLDDA-----------------IVPK-LVPVLFPVLHTIVSFPE-SYDRYVRTKALSIVYSCTAMLGVM 194 (966)
Q Consensus 134 ~aL~~L~~l~~~l~~~-----------------~~~~-i~~~l~p~L~~i~~~~~-~~~~~~r~~al~i~~~~~~~l~~~ 194 (966)
.-|++|..+.+|+.+. .+.. -++.+++.++.++.... ..+..++..+++++.+.+.- +
T Consensus 148 ~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w---i 224 (980)
T 3ibv_A 148 FYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW---I 224 (980)
T ss_dssp HHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---S
T ss_pred HHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh---c
Confidence 7788888666664321 0111 13445666666664310 02345666777776665531 1
Q ss_pred hccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhH-------------------
Q 046316 195 SGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAE------------------- 255 (966)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~------------------- 255 (966)
.....+. ..+++.+.+++.. -.++..+++||..++++-.+.-.
T Consensus 225 ------~~~~i~~---~~ll~~l~~~L~~---------~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~ 286 (980)
T 3ibv_A 225 ------NINLIVN---EPCMNLLYSFLQI---------EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQE 286 (980)
T ss_dssp ------CHHHHHC---HHHHHHHHHHTTS---------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC---
T ss_pred ------CHHhhhc---chHHHHHHHHcCC---------hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhc
Confidence 1111111 3455555566543 14666777777776655432100
Q ss_pred -HhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCC--------C---C-------cCCCCCccchHHHHHHHHHHHHHHh
Q 046316 256 -SEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYA--------G---R-------YDSDGAEKSLDSFVIQLFEFLLTIV 316 (966)
Q Consensus 256 -~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~--------~---~-------~d~~g~~~~~~~l~~~~~efl~~~~ 316 (966)
..=..++..+.+++..+...++.. ....+... . . .-+. .-+++...+++||...+
T Consensus 287 ~~~D~d~~~~la~L~~~~ge~l~~~--~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~----~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 287 QSTDPNFDEHVAKLINAQGVELVAI--KSDPSELSPELKENCSFQLYNLFPYLIRYLSD----DYDETSTAVFPFLSDLL 360 (980)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH--HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC----SSHHHHHTTHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH--ccCccccchhhhhhHHHHHHHHHHHHHHHhCC----CchhHHHHHHHHHHHHH
Confidence 000123334444444433333221 10000000 0 0 0000 01467777889998876
Q ss_pred cChh-------HHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHH
Q 046316 317 GSAK-------LVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGID 389 (966)
Q Consensus 317 ~~~~-------~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~ 389 (966)
+..+ ....+++++..++..++..|++++++ .|++|.+ .|+++++-..|.....+++.+..-.++.++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~--~~~~~~d---~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 361 VSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQ--EWDDDPD---SEEEAEFQEMRKKLKIFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTC--CCCCCSS---SSTHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcc--ccccccc---hhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 4311 23566789999999999999998764 3643100 0111123457888886665555555555566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhc--C---CccccHHHHHHHHHhhhhcCCCCCCh
Q 046316 390 AIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVS--G---LTSVRLGELLEQMITEDIGTGVHQYP 464 (966)
Q Consensus 390 ~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~--~---~~~~~~~~~l~~~i~~~l~~~~~~~~ 464 (966)
.++.++...+++.-. .++...|+.+||+|++++++++.+...... + ..+ .+.+++.+.+...+ ...+||
T Consensus 436 ~~~~~i~~~l~~~l~---~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp-~l~~ll~~ll~s~i--~~~~hp 509 (980)
T 3ibv_A 436 YMYSAITSSLSTAAT---LSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPT-VLSQILALVTTSQV--CRHPHP 509 (980)
T ss_dssp HHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBC-HHHHHHHHHHHSST--TTCCCH
T ss_pred HHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhH-HHHHHHHHHHhCCC--CCCCCH
Confidence 455566655544210 011236999999999999999976431110 0 011 24455554433221 236899
Q ss_pred hHHHHHHHHHHHhhhhcC--hhHHHHHHHHHHh--hhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHH
Q 046316 465 FLYARIFASVARFSSAIS--DGVLEHFLSAAIT--TIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLL 540 (966)
Q Consensus 465 ~Lr~Ra~~~l~~f~~~~~--~~~~~~~l~~~~~--~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll 540 (966)
.+|..+||++|||++++. ++.+...++.++. ++. +++..||.+|+.|+.+||+.+ +..+.||+++|++.+..++
T Consensus 510 ~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~-~~~~~V~~~a~~af~~f~~~~-~~~L~~~~~~il~~l~~lL 587 (980)
T 3ibv_A 510 LVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIH-NTNERVRPRAWYLFYRFVKSI-KKQVVNYTESSLAMLGDLL 587 (980)
T ss_dssp HHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTT-CCCTTTHHHHHHHHHHHHHHT-TTTCSSSHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhcccccc-CCChhHHHHHHHHHHHHHHHh-hHHhhhHHHHHHHHHHHhh
Confidence 999999999999999973 5778888888888 765 346789999999999999986 3468899999999998887
Q ss_pred hhc----C-----------------hhhHHHHHHHHHHHHhhcc----hhhcccccchHHHHHHHHhhcCChhHHHHHHH
Q 046316 541 HQA----R-----------------DETLHLVLETLQAAIKAGF----LTASMEPMISPLILNIWALHVSDPFISIDAIE 595 (966)
Q Consensus 541 ~~~----~-----------------~d~l~~~le~l~~~i~~~~----~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~ 595 (966)
.-. + -|....+.|++..+++... ....+...+++.+++-|.+......
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~------- 660 (980)
T 3ibv_A 588 NISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDL------- 660 (980)
T ss_dssp CCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSC-------
T ss_pred cCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-------
Confidence 621 1 1245667888888876521 2222223333333333332211000
Q ss_pred HHHHHHcCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCC------hhHHHHHHHHHhHHHHHHHhc
Q 046316 596 VLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAS------TDVVKAAYDVCFDAVIRIILQ 669 (966)
Q Consensus 596 ~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~------~~l~~~~~~~~fp~l~~~l~~ 669 (966)
+.++... .+...+-.++.+.|+.+ .+ +...+..+.+.+...+..
T Consensus 661 ------~~~~~~~-----------------------~i~~~i~al~~lakgf~~~~~~~~p-~~~~f~~~~~~il~~l~~ 710 (980)
T 3ibv_A 661 ------SALENII-----------------------SVYCSLMAIGNFAKGFPARGSEEVA-WLASFNKASDEIFLILDR 710 (980)
T ss_dssp ------C--CHHH-----------------------HHHHHHHHHHHHHHTSCSCC-CCCS-HHHHHHHHHHHHHHHHHH
T ss_pred ------cCccHHH-----------------------HHHHHHHHHHHHhccCCcccCCCCc-HHHHHHHHHHHHHHHHHh
Confidence 0000000 11111222233333221 22 334566677777776653
Q ss_pred -cCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHH
Q 046316 670 -SEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIR 748 (966)
Q Consensus 670 -s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~ 748 (966)
..+..+++.+..+++.+|..-+..+ .+++..++..+-.-++ ..+ ....-.++..++.+++.++.+.+.
T Consensus 711 ~~~~~~irea~~~~~~r~i~~lg~~~-------~p~lp~~i~~ll~~~~--~~e--~~~fL~l~~qli~~f~~~~~~~l~ 779 (980)
T 3ibv_A 711 MGFNEDIRGAVRFTSGRIINVVGPDM-------LPKVPQLISILLNSID--MNE--LVDVLSFISQLIHIYKDNMMEITN 779 (980)
T ss_dssp SCCSHHHHHHHHHHHHHHTTTTHHHH-------TTTHHHHHHHHHHHCC--TTT--HHHHHHHHHHHHHHTTTTSHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHccHhH-------HHHHHHHHHHHHhcCC--HHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999988654443 2455555554432222 222 223447899999999988777777
Q ss_pred HHHHHHHHHHHH----h--------hhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccc
Q 046316 749 DLVAALVRRLQS----A--------QIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQG 816 (966)
Q Consensus 749 ~iL~a~~~rL~~----~--------~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~ 816 (966)
.++..++.|... . ....++.+++..+..++.. +...+ +++ ..++..|+.++..-+....
T Consensus 780 ~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~---~~~~v--~~s----~~n~~~l~~~l~~l~~~a~ 850 (980)
T 3ibv_A 780 RMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNK---GFGSI--LFT----EENQVYFDPLINSILHFAN 850 (980)
T ss_dssp HHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHT---TCTGG--GGS----HHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhC---Cchhh--hcC----CcchHHHHHHHHHHHHHhc
Confidence 777777776543 1 1123555666555555544 22222 221 1113457777887776666
Q ss_pred cccccchhHHHHHHHHHHHcc
Q 046316 817 EIQGAYPIKVTTTALALLLST 837 (966)
Q Consensus 817 ~~~g~~~~K~~~laL~~Ll~~ 837 (966)
.+....-.|.++..|+++...
T Consensus 851 ~~~d~~~~K~a~~~l~~~v~~ 871 (980)
T 3ibv_A 851 LVGEPATQKSSIALVSKMVSL 871 (980)
T ss_dssp ----CHHHHHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHHHHHHHH
Confidence 677888999999999998855
No 12
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.93 E-value=3.5e-24 Score=275.27 Aligned_cols=524 Identities=14% Similarity=0.134 Sum_probs=328.3
Q ss_pred HHHHHHHHHHhcCC--CHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhccccccccccCC
Q 046316 12 QQWLLNCLSATLDP--NQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGEESFELP 67 (966)
Q Consensus 12 ~~~l~~~L~~~ls~--d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~~~~~~~ 67 (966)
.++|.++|.++++| |++.|++||++|++++++| |+++|||.|+++|.
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~--------- 80 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN--------- 80 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG---------
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc---------
Confidence 56799999999999 7888999999999998876 89999999999997
Q ss_pred CCChHHHHHHHHHHHHHhhh-------chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHH
Q 046316 68 AVSSEEKEVIRKLLLSSLDD-------THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLA 140 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~-------~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~ 140 (966)
.+++++|..||+.+++.+.. .++.||+++|.+|+.|++.|||++||++++.|++.+++ ++....++|.+|.
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~--~~~~~e~~L~iL~ 158 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ--GETQTELVMFILL 158 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence 68999999999999999743 46999999999999999999999999999999999975 4567899999999
Q ss_pred HHHhhccc-c------------chhhhhhhHHHHHHHHhcCC-----------C-----CCcHHHHHHHHHHHHHHHHHH
Q 046316 141 LLSADLDD-A------------IVPKLVPVLFPVLHTIVSFP-----------E-----SYDRYVRTKALSIVYSCTAML 191 (966)
Q Consensus 141 ~l~~~l~~-~------------~~~~i~~~l~p~L~~i~~~~-----------~-----~~~~~~r~~al~i~~~~~~~l 191 (966)
.+++++.. + .+..-++.+++.+.+++.+. . .....++..+++++.+++.-+
T Consensus 159 ~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi 238 (1204)
T 3a6p_A 159 RLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV 238 (1204)
T ss_dssp HHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc
Confidence 99987321 0 12333556777777666431 0 011234555666665432210
Q ss_pred H--hhhccchhHHHHhh-----HhhhHHHHHHHHHHhcCCCC---------------------------CC--CCChhhH
Q 046316 192 G--VMSGVCKTEMFALM-----MPMLKPWMNHFSIILEHPVQ---------------------------PE--DPDDWGV 235 (966)
Q Consensus 192 ~--~~~~~~~~~~~~~~-----~~~l~~w~~~~~~~L~~~~~---------------------------~~--d~~~~~l 235 (966)
. .+......-+.-++ .+.-..-++.+..++..... +. +.++..+
T Consensus 239 ~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~ 318 (1204)
T 3a6p_A 239 SMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVF 318 (1204)
T ss_dssp CHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHH
T ss_pred CHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHH
Confidence 0 00000000000000 00111222233333322110 00 1111222
Q ss_pred HHHHHHHHHHHHHhcchhh--------HHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHH
Q 046316 236 KMEVLKCLNQFIQNFPSLA--------ESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQ 307 (966)
Q Consensus 236 k~~~~~~L~~l~~~f~~~~--------~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~ 307 (966)
.+.+.+.++.+...+.+.+ .+++..+++.+... .. ++ + ..+...
T Consensus 319 ~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~------------t~----------~~-----~-~~vs~~ 370 (1204)
T 3a6p_A 319 LKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAF------------TT----------HP-----S-QFLRSS 370 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHH------------HT----------SS-----C-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHH------------Hh----------Cc-----c-HHhHHH
Confidence 2233333332222111110 11122222211111 11 11 1 457778
Q ss_pred HHHHHHHHhcChh--HHHHHHHhHHHHHHHH---HHhhcCCHHHH---HHHhhCHHHHhhccc--CCccchhhHHHHHHH
Q 046316 308 LFEFLLTIVGSAK--LVKVIASNVRELVYHT---IAFLQMTEQQI---HIWSIDANQFLADED--ESTYSCRVSGALLLE 377 (966)
Q Consensus 308 ~~efl~~~~~~~~--~~~~l~~~l~~li~~l---i~~~~lt~ed~---e~w~~Dp~~fv~de~--d~~~s~R~aa~~lL~ 377 (966)
+++||...++... ....+.++++.++..+ +..|.+++++. ..|.. ++|-.+++ +.+.+.|....++++
T Consensus 371 ~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~--~D~d~~~E~~~~f~~~Rk~~~d~l~ 448 (1204)
T 3a6p_A 371 TQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSR--FDFDSDEDFNAFFNSSRAQQGEVMR 448 (1204)
T ss_dssp HHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHH--HHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhh--cccCCcHHHHHHHHHHHHHHHHHHH
Confidence 8999998876532 2235677888888888 65667765432 33431 12211111 124788999999999
Q ss_pred HHHHHhChhhHHHHHHHHHHHHHHHHHHH--------h-------cCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccc
Q 046316 378 EVVSYCGREGIDAIIDAASKRFNESQQEK--------A-------AGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSV 442 (966)
Q Consensus 378 ~L~~~~~~~~~~~l~~~i~~~l~~~~~~~--------~-------~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~ 442 (966)
.++..++..++..+.+.+.+.+.+..... + ......|...||..++++++..++.+..+....+-
T Consensus 449 ~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~ 528 (1204)
T 3a6p_A 449 LACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPV 528 (1204)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccH
Confidence 99999988888888888877765421110 0 01234699999999999999988754332110110
Q ss_pred c-HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhc--ChhHHHHHHHHHHhhhcCC-----------CCCcEehh
Q 046316 443 R-LGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAI--SDGVLEHFLSAAITTIAMD-----------VPPPVKVG 508 (966)
Q Consensus 443 ~-~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~--~~~~~~~~l~~~~~~L~~~-----------~~~~Vr~~ 508 (966)
. +..++.. ++ .++ ..+|.+|.|++-++|+|..++ .++.+..+++.++..+... ....||..
T Consensus 529 ~~~~~Ll~~-ll-~~~---~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~ 603 (1204)
T 3a6p_A 529 NDGIELLQM-VL-NFD---TKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRH 603 (1204)
T ss_dssp HHHHHHHHH-HH-HCC---CSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHH-HH-hCC---CCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHH
Confidence 1 2333332 21 112 468999999999999998885 3678888999888887531 11258888
Q ss_pred HHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcC---hhhHHHHHHHHHHHHhh-cc--hhhcccccchHHHHHHHHh
Q 046316 509 ACRALSELLPKANKGNFQPQMMGLFSSLADLLHQAR---DETLHLVLETLQAAIKA-GF--LTASMEPMISPLILNIWAL 582 (966)
Q Consensus 509 A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~---~d~l~~~le~l~~~i~~-~~--~~~~~~~~l~p~~l~l~~~ 582 (966)
||.++..++... ++.+.||+++|.+.+..++.... ......+.|++..+-.. .+ ....+...+++.+++.|..
T Consensus 604 a~~al~~L~~~~-~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 604 ACSSIIKMCRDY-PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHC-HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999875 46789999999999999887443 56677778888666322 12 3334445677778877753
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.92 E-value=1.7e-22 Score=263.78 Aligned_cols=687 Identities=13% Similarity=0.119 Sum_probs=431.4
Q ss_pred HHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc-----------HH-HHHHHHhhhcccccccc-----ccCCCCChHHH
Q 046316 12 QQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP-----------AA-VLLKHFIKKHWQEGEES-----FELPAVSSEEK 74 (966)
Q Consensus 12 ~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p-----------A~-i~LKn~I~~~W~~~~~~-----~~~~~i~~~~K 74 (966)
..++.++|....|||+++|++|++.|.+..+.+ .. .+++-.-..+|.-.... --...++++..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 467999999999999999999999998654332 01 11111111222211000 00113566788
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCC---------CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhh
Q 046316 75 EVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPE---------DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSAD 145 (966)
Q Consensus 75 ~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~---------~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~ 145 (966)
..|+..|+++|.+++..+|.+++.+++.|+..-.|+ .||+++|.|++.+.+..+...+++|+.+|.++++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 899999999998888899999999999999987766 49999999999998434778999999999999987
Q ss_pred ccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCC
Q 046316 146 LDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPV 225 (966)
Q Consensus 146 l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~ 225 (966)
... .+.+..+.+++.++..+.+. +..+|..|++.+..++... . ..+ ++.+++.+...+..+.
T Consensus 165 ~~~-~l~~~~~~ll~~l~~~L~~~---~~~vR~~a~~al~~l~~~~-------~---~~~----~~~~l~~l~~~L~~~~ 226 (1230)
T 1u6g_C 165 QGG-LLVNFHPSILTCLLPQLTSP---RLAVRKRTIIALGHLVMSC-------G---NIV----FVDLIEHLLSELSKND 226 (1230)
T ss_dssp TCS-SCTTTHHHHHHHHGGGGGCS---SHHHHHHHHHHHHHHTTTC------------------CTTHHHHHHHHHHHTC
T ss_pred hHh-HHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhc-------C---HHH----HHHHHHHHHHHhccCC
Confidence 654 34456688899998888764 3578888888766654321 1 112 3334445555554321
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHH
Q 046316 226 QPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFV 305 (966)
Q Consensus 226 ~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~ 305 (966)
+...|..+++++..+....|+.+.+|+..+++.+.+.+. . .+ -......
T Consensus 227 ------~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~------------d----------~~---~~vR~~a 275 (1230)
T 1u6g_C 227 ------SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN------------V----------DD---DELREYC 275 (1230)
T ss_dssp ------SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS------------S----------CC---TTTHHHH
T ss_pred ------chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc------------C----------CC---HHHHHHH
Confidence 134677889999999999999888888887776554331 0 01 1135566
Q ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHH----HHHHhhCHH-------------HHhhcccCCccch
Q 046316 306 IQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQ----IHIWSIDAN-------------QFLADEDESTYSC 368 (966)
Q Consensus 306 ~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed----~e~w~~Dp~-------------~fv~de~d~~~s~ 368 (966)
..++++|....+. .+.|+++.++..++.++...++. .+.|.++.+ .| .++++..|.+
T Consensus 276 ~~~l~~l~~~~~~-----~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~v 349 (1230)
T 1u6g_C 276 IQAFESFVRRCPK-----EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEY-SDDDDMSWKV 349 (1230)
T ss_dssp HHHHHHHHHCTTC-----CCHHHHHHHHHHHTTCCCCC-------------------------------------CTTHH
T ss_pred HHHHHHHHHHChH-----HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccc-ccccccCHHH
Confidence 6677776665432 23567777888777766643321 112211111 11 1112235889
Q ss_pred hhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhH--hcCC-------
Q 046316 369 RVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAE--VSGL------- 439 (966)
Q Consensus 369 R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~--~~~~------- 439 (966)
|.+|.+.+..++..+++ .+..+++.+...+...- .+ .+...|.+++.+++.+...+.... ..+.
T Consensus 350 R~~A~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l-----~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 422 (1230)
T 1u6g_C 350 RRAAAKCLDAVVSTRHE-MLPEFYKTVSPALISRF-----KE-REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGE 422 (1230)
T ss_dssp HHHHHHHHHHHHTTCCT-THHHHHTTTHHHHHSTT-----SC-SSSHHHHHHHHHHHHHHHHHCCC------------CC
T ss_pred HHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHHHc-----CC-CchHHHHHHHHHHHHHHHHhccccccccCcccccccc
Confidence 99999999999987664 23333333333332210 12 235778888888877654321000 0000
Q ss_pred ccc-cHHHHHHHH---HhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh---hHHHHHHHHHHhhhcCCCC-CcEehhHHH
Q 046316 440 TSV-RLGELLEQM---ITEDIGTGVHQYPFLYARIFASVARFSSAISD---GVLEHFLSAAITTIAMDVP-PPVKVGACR 511 (966)
Q Consensus 440 ~~~-~~~~~l~~~---i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~---~~~~~~l~~~~~~L~~~~~-~~Vr~~A~~ 511 (966)
.+. .+..++..+ +...++ ++++.+|..+|.+++.+....+. +...++++.++..|..... ..||..|+.
T Consensus 423 ~~~~~~~~~l~~ll~~l~~~l~---~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~ 499 (1230)
T 1u6g_C 423 TPLTMLQSQVPNIVKALHKQMK---EKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALS 499 (1230)
T ss_dssp CHHHHHHHHTTHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHH
T ss_pred chHHHHHHHhhHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 000 122223222 222344 78889999999999999887542 5678888888888874321 268888999
Q ss_pred HHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh--c-----c-hhhcccccchHHHHHHHHhh
Q 046316 512 ALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKA--G-----F-LTASMEPMISPLILNIWALH 583 (966)
Q Consensus 512 al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~--~-----~-~~~~~~~~l~p~~l~l~~~~ 583 (966)
++..++.....+.+.||+..++..++..+.+........++.++..+++. . . ....|.+.++|.+++.+.+.
T Consensus 500 ~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 579 (1230)
T 1u6g_C 500 CLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA 579 (1230)
T ss_dssp HHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc
Confidence 99999876555668899998999998888765544445566666655532 0 1 11234456777777775445
Q ss_pred cCChhHHHHHHHHHHHHHc-CCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCC-hhHHHHHHHHHhH
Q 046316 584 VSDPFISIDAIEVLEAIKC-SPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAS-TDVVKAAYDVCFD 661 (966)
Q Consensus 584 ~~d~~~~~~~~~~l~~l~~-~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~-~~l~~~~~~~~fp 661 (966)
..++.+|..+..++..++. .++.+.++...++|.+...+.++. ....++..++.+..... .++. .++..++|
T Consensus 580 d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~-----~r~~~~~al~~i~~~~~~~~~~-~~~~~i~~ 653 (1230)
T 1u6g_C 580 DIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI-----TRLTTVKALTLIAGSPLKIDLR-PVLGEGVP 653 (1230)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS-----HHHHHHHHHHHHTTCSSCCCCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch-----hHHHHHHHHHHHHhCccccchH-HHHHHHHH
Confidence 5677899999999999984 355556677888888888877542 23445666666665432 1232 34566778
Q ss_pred HHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhh---cCCCCCCccccchHHHHHHHHHh
Q 046316 662 AVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRL---LNPDLESSGSLFVGSYILQLILH 738 (966)
Q Consensus 662 ~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~l---L~~~~~~~~~~~vg~Lv~~li~~ 738 (966)
.+...+ .+.+..+.++++.++..++...++.+. .+.+..++..+ ++.. +......+...+..++.+
T Consensus 654 ~L~~~l-~~~~~~~r~~a~~al~~l~~~~~~~~~---------~~~v~~~l~~ll~ll~~~-D~~~~~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 654 ILASFL-RKNQRALKLGTLSALDILIKNYSDSLT---------AAMIDAVLDELPPLISES-DMHVSQMAISFLTTLAKV 722 (1230)
T ss_dssp HHHHHT-TSCCHHHHHHHHHHHHHHHHHCCTTCC---------HHHHHHHHTTCGGGSCTT-CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHHHhcccccCC---------HHHHHHHHHHHHhhcCcc-hHHHHHHHHHHHHHHHHh
Confidence 887765 466788999999999999998665431 23444444433 2221 112334667777777777
Q ss_pred CChhhhHhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhh
Q 046316 739 LPSQMAQHIRDLVAALVRRLQSAQ-IAGLRSSLLLIFARLVHM 780 (966)
Q Consensus 739 ~~~~l~~~l~~iL~a~~~rL~~~~-~~~~~~~li~vfa~l~~~ 780 (966)
.+..+.++.+.++..++..+.+.. .....+.++.+|..+...
T Consensus 723 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 765 (1230)
T 1u6g_C 723 YPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVT 765 (1230)
T ss_dssp CGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhc
Confidence 766566666777777766665544 233456677777766654
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.85 E-value=1.6e-17 Score=208.62 Aligned_cols=677 Identities=14% Similarity=0.115 Sum_probs=411.6
Q ss_pred HHHHHHHHhcCCCHHHhHHHHHHHHhhccC-----c--HHHHHHHHhhhcccccc------------------ccccCCC
Q 046316 14 WLLNCLSATLDPNQEVRSFAEVSLNQASLQ-----P--AAVLLKHFIKKHWQEGE------------------ESFELPA 68 (966)
Q Consensus 14 ~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~-----p--A~i~LKn~I~~~W~~~~------------------~~~~~~~ 68 (966)
.+..++....+.+.++|..|=..|+..-+. | .--.+|+.+-+.-.... ....||.
T Consensus 49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ 128 (852)
T 4fdd_A 49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD 128 (852)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTT
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHH
Confidence 456666655678899999999999855432 2 11233333222111000 0001211
Q ss_pred CChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCC---------CccchHHHHHHHhcccCchhhHhHHHHHH
Q 046316 69 VSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPE---------DWPDLLPFLLKLITDQSNMNGVHGGLRCL 139 (966)
Q Consensus 69 i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~---------~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L 139 (966)
+-..|.+.+.+++..+|.....+++.|+.. +|+ .++.+++.+++.+++. ++..+..|+.+|
T Consensus 129 --------ll~~L~~~l~~~~~~~r~~al~~L~~i~~~-~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL 198 (852)
T 4fdd_A 129 --------LLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACV 198 (852)
T ss_dssp --------HHHHHHHHHSCSSHHHHHHHHHHHHHHHHH-HTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHH
T ss_pred --------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hHHHhchhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 344456666777888999999999988763 232 2678889999888874 778889999999
Q ss_pred HHHHhhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHH
Q 046316 140 ALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSI 219 (966)
Q Consensus 140 ~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~ 219 (966)
..+++.... .+....+.+++.+...+++. +..+|..+++++..+... .++.+.++++..++.+..
T Consensus 199 ~~~~~~~~~-~~~~~~~~~l~~l~~~~~d~---~~~vr~~a~~~L~~l~~~-----------~~~~~~~~l~~l~~~l~~ 263 (852)
T 4fdd_A 199 NQFIISRTQ-ALMLHIDSFIENLFALAGDE---EPEVRKNVCRALVMLLEV-----------RMDRLLPHMHNIVEYMLQ 263 (852)
T ss_dssp HTTTTTTCH-HHHTSHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHHH-----------CHHHHGGGHHHHHHHHHH
T ss_pred HHHHhcccH-HHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHh-----------CHHHHHHHHHHHHHHHHH
Confidence 887764332 34445567888888877654 467888888877665542 245566788888888888
Q ss_pred HhcCCCCCCCCChhhHHHHHHHHHHHHHHh--cchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCC-
Q 046316 220 ILEHPVQPEDPDDWGVKMEVLKCLNQFIQN--FPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDG- 296 (966)
Q Consensus 220 ~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g- 296 (966)
+++. .+..+|..+++.+..+.+. ..+.+.+++..+++.+.+.+...-.-.. ..... ..++..+.|+
T Consensus 264 ~~~~-------~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~--~~~~d--~~ed~~~dd~~ 332 (852)
T 4fdd_A 264 RTQD-------QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDII--LLKGD--VEGGSGGDDTI 332 (852)
T ss_dssp HHTC-------SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHH--HHHC--------------
T ss_pred HccC-------CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHH--HhcCC--ccccccccccc
Confidence 8764 2346899999998887653 2234555666555544333311000000 00010 0000111110
Q ss_pred CccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHH
Q 046316 297 AEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLL 376 (966)
Q Consensus 297 ~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL 376 (966)
...++......++..+...... . .++.++..+..++. +..+.+|.+|...|
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~-~-------~~~~l~~~l~~~l~---------------------~~~~~~R~aa~~al 383 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRD-E-------LLPHILPLLKELLF---------------------HHEWVVKESGILVL 383 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGG-G-------GHHHHHHHHHHHHT---------------------CSSHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccH-H-------HHHHHHHHHHHHhc---------------------CCCHHHHHHHHHHH
Confidence 1122344555555555554431 1 12223333333221 12477899999999
Q ss_pred HHHHHHhChh---hHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHh
Q 046316 377 EEVVSYCGRE---GIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMIT 453 (966)
Q Consensus 377 ~~L~~~~~~~---~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~ 453 (966)
..+++..++. .++.+++.+.+.+. + ..++.|.++..++|.+++.+..... .++ +..++.. +.
T Consensus 384 g~i~~~~~~~~~~~l~~~l~~l~~~l~---------d-~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~-~~~ll~~-L~ 448 (852)
T 4fdd_A 384 GAIAEGCMQGMIPYLPELIPHLIQCLS---------D-KKALVRSITCWTLSRYAHWVVSQPP---DTY-LKPLMTE-LL 448 (852)
T ss_dssp HHTTTTTHHHHGGGHHHHHHHHHHHTT---------C-SSHHHHHHHHHHHHHTHHHHHHSCT---TTT-HHHHHHH-HH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHcC---------C-CCHHHHHHHHHHHHHHHHHhccchH---HHH-HHHHHHH-HH
Confidence 9988765432 23455555555443 2 3589999999999999986542111 112 3443443 23
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhhhhcCh---hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCC-CccccH
Q 046316 454 EDIGTGVHQYPFLYARIFASVARFSSAISD---GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKG-NFQPQM 529 (966)
Q Consensus 454 ~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~---~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~-~l~p~l 529 (966)
..++ +.++-+|..|+|.++.+++..++ +++..+++.++..+... ....+..+..|+..+++..... .-.+|+
T Consensus 449 ~~L~---d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~~~~~~~~~~~~~~ 524 (852)
T 4fdd_A 449 KRIL---DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY-QHKNLLILYDAIGTLADSVGHHLNKPEYI 524 (852)
T ss_dssp HHHT---CSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHGGGGCCHHHH
T ss_pred HHHh---CCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhhhhhccHHHH
Confidence 3444 67899999999999999987543 45667777777776532 2222233556666665442111 113577
Q ss_pred HHHHHHHHHHHhhcCh--hhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhc---------------CChhHHH
Q 046316 530 MGLFSSLADLLHQARD--ETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHV---------------SDPFISI 591 (966)
Q Consensus 530 ~~il~~L~~ll~~~~~--d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~---------------~d~~~~~ 591 (966)
..++..+++..+...+ ..+..+++++..++..-. ....+...+.+.++++..... .|..++.
T Consensus 525 ~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~ 604 (852)
T 4fdd_A 525 QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMI 604 (852)
T ss_dssp HHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHH
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHH
Confidence 7777777765543221 223466777766654321 111222334454444433221 1445677
Q ss_pred HHHHHHHHHHc-CCCcHHHHH--HhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHh
Q 046316 592 DAIEVLEAIKC-SPGCIHQLA--SRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIIL 668 (966)
Q Consensus 592 ~~~~~l~~l~~-~~~~~~~l~--~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~ 668 (966)
.+.+++..++. .++.+.++. +.++|.+...++.+ .......+..+++.+.+..+..+-+. +..++|.+.+.+
T Consensus 605 ~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~~vr~~a~~~l~~l~~~~~~~~~~~-l~~~lp~l~~~l- 679 (852)
T 4fdd_A 605 VALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK---MPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNL- 679 (852)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC---ChhHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHc-
Confidence 78888888873 456666665 78899999988654 23567889999999999887665553 455678888877
Q ss_pred ccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhc-CCCCCCccccchHHHHHHHHHhCChhhhHhH
Q 046316 669 QSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLL-NPDLESSGSLFVGSYILQLILHLPSQMAQHI 747 (966)
Q Consensus 669 ~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL-~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l 747 (966)
..++.++..+++.++..+..+..+.+ .+++..++..+.+++ +|+...+..-++...+..+....+..+.|++
T Consensus 680 ~~~~~~v~~~a~~alg~i~~~~~~~~-------~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l 752 (852)
T 4fdd_A 680 NPEFISVCNNATWAIGEISIQMGIEM-------QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML 752 (852)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHGGGG-------GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred CccchHHHHHHHHHHHHHHHHhhHhH-------HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccH
Confidence 45577899999999999988765544 467788888888777 4554433344455555666667666678999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 046316 748 RDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFI 789 (966)
Q Consensus 748 ~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~~~~~~~~~l 789 (966)
++++...++.|...+...-+.....-|+.++.. ||+.++
T Consensus 753 ~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~---~p~~~~ 791 (852)
T 4fdd_A 753 QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV---NPSGVI 791 (852)
T ss_dssp HHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHH---CGGGTG
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHh---ChHhHH
Confidence 999999999998755555566677778888888 777544
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.83 E-value=1.1e-17 Score=210.79 Aligned_cols=612 Identities=12% Similarity=0.076 Sum_probs=389.5
Q ss_pred HHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHhccC-------CCCccchHHH--------HHHHhcccCchhhHhHHH
Q 046316 74 KEVIRKLLLSSLDD--THRKICTAISMAVASIAAYDW-------PEDWPDLLPF--------LLKLITDQSNMNGVHGGL 136 (966)
Q Consensus 74 K~~IR~~Ll~~L~~--~~~kIr~~~a~~Is~Ia~~D~-------P~~WP~Ll~~--------L~~~l~s~~~~~~~~~aL 136 (966)
+..+...|++.+.+ .+..+|..++.++......+| +..|+.+-+. +++.+.+. ++.. +++.
T Consensus 33 ~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~-~~~~-~~~~ 110 (876)
T 1qgr_A 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTE-TYRP-SSAS 110 (876)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTC-CSSS-CHHH
T ss_pred hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCC-cHHH-HHHH
Confidence 45677888888855 458899999999998776553 4678877776 88888764 5556 9999
Q ss_pred HHHHHHHhhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHH
Q 046316 137 RCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNH 216 (966)
Q Consensus 137 ~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~ 216 (966)
.++..+.+.... ..--+.++|.+.+.+.+.. ++..+|..+++++..+...+. ++.+.++++.+++.
T Consensus 111 ~~l~~i~~~~~~---~~~w~~ll~~l~~~l~~~~-~~~~~r~~al~~l~~l~~~~~----------~~~~~~~~~~ll~~ 176 (876)
T 1qgr_A 111 QCVAGIACAEIP---VNQWPELIPQLVANVTNPN-STEHMKESTLEAIGYICQDID----------PEQLQDKSNEILTA 176 (876)
T ss_dssp HHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSC----------HHHHGGGHHHHHHH
T ss_pred HHHHHHHHhhCc---ccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhcC----------HhhHHhHHHHHHHH
Confidence 999998875311 1224678888888887652 246788889988887765321 22356778888888
Q ss_pred HHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCC
Q 046316 217 FSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDG 296 (966)
Q Consensus 217 ~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g 296 (966)
+.+.+..+. ....+|..+++++..++..++..+.... ....+++.+.. ... +.+
T Consensus 177 l~~~l~~~~-----~~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~~il~~l~~--------~~~----------~~~- 230 (876)
T 1qgr_A 177 IIQGMRKEE-----PSNNVKLAATNALLNSLEFTKANFDKES--ERHFIMQVVCE--------ATQ----------CPD- 230 (876)
T ss_dssp HHHHHSTTC-----SCHHHHHHHHHHHHHHGGGCHHHHTSHH--HHHHHHHHHHH--------HTT----------CSS-
T ss_pred HHHhhcCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHH--------HcC----------CCC-
Confidence 888887521 1467899999999998865554332111 00111221111 111 111
Q ss_pred CccchHHHHHHHHHHHHHHhcChhHHHHHHHhHH-HHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHH
Q 046316 297 AEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVR-ELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALL 375 (966)
Q Consensus 297 ~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~-~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~l 375 (966)
.++...+++++..+++.. .+.+.+++. .++..++..+.- ...++|..|.++
T Consensus 231 -----~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~---------------------~~~~v~~~al~~ 282 (876)
T 1qgr_A 231 -----TRVRVAALQNLVKIMSLY--YQYMETYMGPALFAITIEAMKS---------------------DIDEVALQGIEF 282 (876)
T ss_dssp -----HHHHHHHHHHHHHHHHHS--GGGCHHHHTTTHHHHHHHHHTC---------------------SSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhcC---------------------CchHHHHHHHHH
Confidence 457777888888776421 123445555 555555443321 123456667777
Q ss_pred HHHHHHHhC------------------------hhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHH
Q 046316 376 LEEVVSYCG------------------------REGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQL 431 (966)
Q Consensus 376 L~~L~~~~~------------------------~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l 431 (966)
+..+++... +..+..+++.+.+.+..... ..+..+|+.|.++..+++.++..+
T Consensus 283 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~---d~~~~~~~~r~~a~~~l~~l~~~~ 359 (876)
T 1qgr_A 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE---NDDDDDWNPCKAAGVCLMLLATCC 359 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCS---SCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccc---cccccccHHHHHHHHHHHHHHHHC
Confidence 766665421 00123333333333322100 001346999999999999998765
Q ss_pred HHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh----hHHHHHHHHHHhhhcCCCCCcEeh
Q 046316 432 LEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD----GVLEHFLSAAITTIAMDVPPPVKV 507 (966)
Q Consensus 432 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~----~~~~~~l~~~~~~L~~~~~~~Vr~ 507 (966)
.+ . + +..++. .+...++ ++++.+|..|++++|.+++...+ +....+++.++..|. +.+..||.
T Consensus 360 ~~--~-----~-~~~~l~-~l~~~l~---~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~vr~ 426 (876)
T 1qgr_A 360 ED--D-----I-VPHVLP-FIKEHIK---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-DPSVVVRD 426 (876)
T ss_dssp GG--G-----G-HHHHHH-HHHHHTT---CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT-CSSHHHHH
T ss_pred cH--h-----h-HHHHHH-HHHHHcc---CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 31 1 1 333333 4444455 68899999999999999987663 345566777777775 55678999
Q ss_pred hHHHHHHhhcccCCCCC-ccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhc--------------c-hhhccccc
Q 046316 508 GACRALSELLPKANKGN-FQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAG--------------F-LTASMEPM 571 (966)
Q Consensus 508 ~A~~al~~~~~~~~~~~-l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~--------------~-~~~~~~~~ 571 (966)
.|+.++.++++...... ..|++..++..++..+.+. ......++.++..++..- . ....+...
T Consensus 427 ~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (876)
T 1qgr_A 427 TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505 (876)
T ss_dssp HHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH
T ss_pred HHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHH
Confidence 99999999998743222 5689999999999998763 444444444444443220 1 11223345
Q ss_pred chHHHHHHHHhhc-CChhHHHHHHHHHHHHHcC-CCcHHHHHHhhhcchHhhhcCC------C-CCC-----chhhHHHH
Q 046316 572 ISPLILNIWALHV-SDPFISIDAIEVLEAIKCS-PGCIHQLASRILPYVGPILNNP------Q-QQP-----DGLVAGSL 637 (966)
Q Consensus 572 l~p~~l~l~~~~~-~d~~~~~~~~~~l~~l~~~-~~~~~~l~~~~lP~l~~~l~~~------~-~~~-----~~~~~~al 637 (966)
++|.+++++.+.. .+..++..+.+++..+... +....++...++|.+...+... . ... ......++
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~ 585 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHH
Confidence 6677766633322 2346888889999988843 5566678888888887766531 0 111 12235678
Q ss_pred HHHHHHhhcCC-hhHHHHHHHHHhHHHHHHHhccCc-hHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhh
Q 046316 638 DLLTMLLKSAS-TDVVKAAYDVCFDAVIRIILQSED-HSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRL 715 (966)
Q Consensus 638 ~ll~~l~~~~~-~~l~~~~~~~~fp~l~~~l~~s~d-~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~l 715 (966)
..++.+++..+ ..+.+ +...++|.+++++....+ ..+...++.++..++...+..| .+++..++.++.+.
T Consensus 586 ~~l~~l~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~-------~~~~~~~~~~l~~~ 657 (876)
T 1qgr_A 586 ATLQNVLRKVQHQDALQ-ISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF-------LKYMEAFKPFLGIG 657 (876)
T ss_dssp HHHHHHHTTSCHHHHHT-THHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGG-------GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhhH-HHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHH
Confidence 89999998887 66654 356678888888764322 3678889999999988755544 36788888888877
Q ss_pred cCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhh
Q 046316 716 LNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQ-IAGLRSSLLLIFARLVHM 780 (966)
Q Consensus 716 L~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~-~~~~~~~li~vfa~l~~~ 780 (966)
|...........+...+..++..++.++.++++.++..++..|...+ ...++...+..+++++..
T Consensus 658 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 658 LKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA 723 (876)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHH
Confidence 74321222333456677777777777788999999999999887632 355777777788877654
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.82 E-value=1.1e-15 Score=192.38 Aligned_cols=607 Identities=12% Similarity=0.131 Sum_probs=395.0
Q ss_pred HHHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHhc---cCC--CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhh
Q 046316 73 EKEVIRKLLLSSLDDT--HRKICTAISMAVASIAAY---DWP--EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSAD 145 (966)
Q Consensus 73 ~K~~IR~~Ll~~L~~~--~~kIr~~~a~~Is~Ia~~---D~P--~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~ 145 (966)
....|-..+.+++.++ +..+|.++..++..+..+ .+. ..|+.+++.+.+.+++. +......++.+|..+++.
T Consensus 176 ~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 176 SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 4555666677777766 789999999999886532 111 13677999999888774 778889999999999987
Q ss_pred ccccchhhhhh-hHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhH------HHHhhHhhhHHHHHHHH
Q 046316 146 LDDAIVPKLVP-VLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTE------MFALMMPMLKPWMNHFS 218 (966)
Q Consensus 146 l~~~~~~~i~~-~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~------~~~~~~~~l~~w~~~~~ 218 (966)
..+ .+.+... .+++.+...+.+. ...+|..|+..+..+.............+ .+.++.+++...++.+.
T Consensus 255 ~~~-~~~~~l~~~l~~~~~~~~~~~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll 330 (861)
T 2bpt_A 255 YYT-FMKPYMEQALYALTIATMKSP---NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL 330 (861)
T ss_dssp HGG-GCHHHHHHTHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence 653 3444455 7777777776543 46788888888887766432111000000 01133455666777777
Q ss_pred HHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCc
Q 046316 219 IILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAE 298 (966)
Q Consensus 219 ~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~ 298 (966)
..+..+....+.++|.+++.+.++|..+...+++.+.+. +++.+ . ..+.. ..
T Consensus 331 ~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~---l~~~l----~--------~~l~~------------~~- 382 (861)
T 2bpt_A 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP---VLEFV----E--------QNITA------------DN- 382 (861)
T ss_dssp HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH---HHHHH----H--------HHTTC------------SS-
T ss_pred HHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHH---HHHHH----H--------HHcCC------------CC-
Confidence 777653211123558999999999999999888643332 22211 1 11111 11
Q ss_pred cchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHH
Q 046316 299 KSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEE 378 (966)
Q Consensus 299 ~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~ 378 (966)
.+....++..+..+++... ...+.++++.++..+++.+. || ...+|.++...+..
T Consensus 383 ---~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~-----------d~----------~~~vr~~a~~~l~~ 437 (861)
T 2bpt_A 383 ---WRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMN-----------DQ----------SLQVKETTAWCIGR 437 (861)
T ss_dssp ---HHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGG-----------CS----------CHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcC-----------CC----------cHHHHHHHHHHHHH
Confidence 2456667777888775432 12446777777777766542 11 24568888889999
Q ss_pred HHHHhCh-----hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHh
Q 046316 379 VVSYCGR-----EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMIT 453 (966)
Q Consensus 379 L~~~~~~-----~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~ 453 (966)
+++..+. ..+..+++.+.+.+. +. ++.|.++..+++.++..+.+.......++ +..++.. +.
T Consensus 438 l~~~~~~~~~~~~~~~~~l~~l~~~l~---------~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~-~~~il~~-L~ 504 (861)
T 2bpt_A 438 IADSVAESIDPQQHLPGVVQACLIGLQ---------DH--PKVATNCSWTIINLVEQLAEATPSPIYNF-YPALVDG-LI 504 (861)
T ss_dssp HHHHHGGGSCTTTTHHHHHHHHHHHHT---------SC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGG-HHHHHHH-HH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhc---------cC--hHHHHHHHHHHHHHHHhcccccchhhHHH-HHHHHHH-HH
Confidence 9988753 346677777666553 22 78899999999998776421000001122 3444433 23
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhhhhcCh---hHHHHHHHHHHhhhcCC--------------CCCcEehhHHHHHHhh
Q 046316 454 EDIGTGVHQYPFLYARIFASVARFSSAISD---GVLEHFLSAAITTIAMD--------------VPPPVKVGACRALSEL 516 (966)
Q Consensus 454 ~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~---~~~~~~l~~~~~~L~~~--------------~~~~Vr~~A~~al~~~ 516 (966)
..+.. .+.++-+|..++.+++.+....+. .....+++.+++.|... ....+|..++.++..+
T Consensus 505 ~~l~~-~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l 583 (861)
T 2bpt_A 505 GAANR-IDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAV 583 (861)
T ss_dssp HHHTC-SCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-cCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHH
Confidence 33431 134478999999999999987653 34445555555555311 1234677899999999
Q ss_pred cccCCCCCccccHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHH
Q 046316 517 LPKANKGNFQPQMMGLFSSLADLLHQARD-ETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAI 594 (966)
Q Consensus 517 ~~~~~~~~l~p~l~~il~~L~~ll~~~~~-d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~ 594 (966)
+.... ..+.|+++.++..+..+++.... .....++.++..+..... ....+...++|.+++.+ ...++.++..+.
T Consensus 584 ~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l--~~~~~~vr~~a~ 660 (861)
T 2bpt_A 584 IRKSP-SSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL--NQVDSPVSITAV 660 (861)
T ss_dssp HHHCG-GGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH--HCTTSHHHHHHH
T ss_pred HHHhh-hhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--ccccHHHHHHHH
Confidence 87643 36789999999999999987655 555555555544443221 11233346778888876 345667888889
Q ss_pred HHHHHHH-cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccC--
Q 046316 595 EVLEAIK-CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSE-- 671 (966)
Q Consensus 595 ~~l~~l~-~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~-- 671 (966)
+++..++ ..+..+.++...++|.+...+..+.. .......++..++.+++..+..+.+. +..++|.+++.+..+.
T Consensus 661 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~-l~~~l~~l~~~~~~~~~~ 738 (861)
T 2bpt_A 661 GFIADISNSLEEDFRRYSDAMMNVLAQMISNPNA-RRELKPAVLSVFGDIASNIGADFIPY-LNDIMALCVAAQNTKPEN 738 (861)
T ss_dssp HHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTC-CTTHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHhchhccchHHHHHHHHHHHhCCccc-cHhhhHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCC
Confidence 9998888 34667788899999999999876421 23567788999999999887777663 6778898888775321
Q ss_pred -c-------hHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCC--C-CCccccchHHHHHHHHHhC-
Q 046316 672 -D-------HSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPD--L-ESSGSLFVGSYILQLILHL- 739 (966)
Q Consensus 672 -d-------~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~--~-~~~~~~~vg~Lv~~li~~~- 739 (966)
| ..+...+++++..++....+. . ....+++..+++++.+.+... . ++.-...+..++..+...+
T Consensus 739 ~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~--~--~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~ 814 (861)
T 2bpt_A 739 GTLEALDYQIKVLEAVLDAYVGIVAGLHDK--P--EALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFP 814 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHTTTC--H--HHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCT
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHccC--H--HHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcC
Confidence 1 235577778888887654321 0 001468888999888776321 0 3344556788888999899
Q ss_pred ChhhhHhHH-HHHHHHHHHHHH
Q 046316 740 PSQMAQHIR-DLVAALVRRLQS 760 (966)
Q Consensus 740 ~~~l~~~l~-~iL~a~~~rL~~ 760 (966)
|..+.++++ .++..+++++..
T Consensus 815 g~~~~~~~~~~~~~~ll~~l~~ 836 (861)
T 2bpt_A 815 DGSIKQFYGQDWVIDYIKRTRS 836 (861)
T ss_dssp TSTTGGGTTCHHHHHHHHHHHH
T ss_pred CchHHHHHhcHHHHHHHHHHhh
Confidence 667888998 899999998885
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.74 E-value=1.1e-14 Score=189.94 Aligned_cols=628 Identities=14% Similarity=0.138 Sum_probs=385.3
Q ss_pred HHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhc
Q 046316 45 AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLIT 124 (966)
Q Consensus 45 A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~ 124 (966)
|.--|++.++.... ..++..-..+...|++.|.+++..+|.+++.+++.++..--+..|+.+++.|...+.
T Consensus 26 A~~~L~~~l~~~~~---------~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~ 96 (1230)
T 1u6g_C 26 ATNDLMTELQKDSI---------KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML 96 (1230)
T ss_dssp HHHHHHHHTSSSCC---------SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccc---------CCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 55667776654321 234455556777788999899999999999999999986555679999999999998
Q ss_pred ccCchhhHhHHHHHHHHHHhhcccc-----chhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccch
Q 046316 125 DQSNMNGVHGGLRCLALLSADLDDA-----IVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCK 199 (966)
Q Consensus 125 s~~~~~~~~~aL~~L~~l~~~l~~~-----~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~ 199 (966)
+. ++..+++|..+|..++..+..+ ......+.++|.|+..+.+. .+..+|..|+.++..+....
T Consensus 97 d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~--~~~~~~~~al~~l~~~~~~~-------- 165 (1230)
T 1u6g_C 97 SD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ--EDVSVQLEALDIMADMLSRQ-------- 165 (1230)
T ss_dssp CS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC--SCHHHHHHHHHHHHHHHHHT--------
T ss_pred CC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHh--------
Confidence 74 6677899999999999887653 23456789999999999742 24678888888888766431
Q ss_pred hHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHh
Q 046316 200 TEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRS 279 (966)
Q Consensus 200 ~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 279 (966)
+..+.++++.+++.+...++.+ +..+|..+++++..+....++.+ +..+++.+++.+..
T Consensus 166 ---~~~l~~~~~~ll~~l~~~L~~~-------~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~-------- 224 (1230)
T 1u6g_C 166 ---GGLLVNFHPSILTCLLPQLTSP-------RLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSK-------- 224 (1230)
T ss_dssp ---CSSCTTTHHHHHHHHGGGGGCS-------SHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHH--------
T ss_pred ---HhHHHHHHHHHHHHHHHHHcCC-------cHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhcc--------
Confidence 1234467788888888888642 24799999999999987776543 22233333333321
Q ss_pred hccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhh
Q 046316 280 SIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLA 359 (966)
Q Consensus 280 ~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~ 359 (966)
. . + . ....-...++..+...+.. .+.++++.++..++..+.
T Consensus 225 ~-~----------~-~----~~r~~a~~~l~~l~~~~~~-----~~~~~l~~l~~~ll~~l~------------------ 265 (1230)
T 1u6g_C 225 N-D----------S-M----STTRTYIQCIAAISRQAGH-----RIGEYLEKIIPLVVKFCN------------------ 265 (1230)
T ss_dssp T-C----------S-S----CSCTTHHHHHHHHHHHSSG-----GGTTSCTTHHHHHHHHHS------------------
T ss_pred C-C----------c-h----hHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHhc------------------
Confidence 0 0 0 0 0011223333333333221 345677777777776553
Q ss_pred cccCCccchhhHHHHHHHHHHHHhChhh---HHHHHHHHHHHHHHH---------------H---HH-H--------hcC
Q 046316 360 DEDESTYSCRVSGALLLEEVVSYCGREG---IDAIIDAASKRFNES---------------Q---QE-K--------AAG 409 (966)
Q Consensus 360 de~d~~~s~R~aa~~lL~~L~~~~~~~~---~~~l~~~i~~~l~~~---------------~---~~-~--------~~~ 409 (966)
| +...+|.+|..++..+++.+++.. ++.+++.+.+.+... . .. . ...
T Consensus 266 d---~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1230)
T 1u6g_C 266 V---DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDD 342 (1230)
T ss_dssp S---CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------------------------
T ss_pred C---CCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccc
Confidence 1 124579999999999999887653 333444333222100 0 00 0 000
Q ss_pred CCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC-------
Q 046316 410 STVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS------- 482 (966)
Q Consensus 410 ~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~------- 482 (966)
+...|+.|+++..+++.++... +-.+.+++...+........+.++-+|..++-+++.+.....
T Consensus 343 ~d~~~~vR~~A~~~l~~l~~~~---------~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 413 (1230)
T 1u6g_C 343 DDMSWKVRRAAAKCLDAVVSTR---------HEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLC 413 (1230)
T ss_dssp --CTTHHHHHHHHHHHHHHTTC---------CTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cccCHHHHHHHHHHHHHHHHhc---------hhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccccc
Confidence 1236999999999999886521 111344444333222221236788999988888887765431
Q ss_pred ---------------hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcCh--
Q 046316 483 ---------------DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARD-- 545 (966)
Q Consensus 483 ---------------~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~-- 545 (966)
...+..+++.+.+.|. +.+..+|..|+.++..++... +..+.|++..++..++..+.+...
T Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-~~~~~vr~~~~~~L~~l~~~~-~~~l~~~l~~ll~~l~~~L~d~~~~~ 491 (1230)
T 1u6g_C 414 DPDAMEQGETPLTMLQSQVPNIVKALHKQMK-EKSVKTRQCCFNMLTELVNVL-PGALTQHIPVLVPGIIFSLNDKSSSS 491 (1230)
T ss_dssp -------CCCHHHHHHHHTTHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHS-TTTTGGGHHHHHHHHHHHTTCSSSCH
T ss_pred CccccccccchHHHHHHHhhHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHc-hhhhHHHHHHHHHHHHHHHcCCCCcc
Confidence 1233344555555566 446689999999999998874 456788999888888888765542
Q ss_pred hhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHc-C-CCcHHHHHHhhhcchHhhhc
Q 046316 546 ETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKC-S-PGCIHQLASRILPYVGPILN 623 (966)
Q Consensus 546 d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~-~-~~~~~~l~~~~lP~l~~~l~ 623 (966)
+.... +...+..+.. . ++.+.++.+.++|.+...++
T Consensus 492 ~v~~~------------------------------------------a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~ 529 (1230)
T 1u6g_C 492 NLKID------------------------------------------ALSCLYVILCNHSPQVFHPHVQALVPPVVACVG 529 (1230)
T ss_dssp HHHHH------------------------------------------HHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHT
T ss_pred hHHHH------------------------------------------HHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHc
Confidence 11111 1122222221 1 23455666777888777775
Q ss_pred CCCCCCchhhHHHHHHHHHHhhcCCh-------hHHHHHHHHHhHHHHHHHh-ccCchHHhhhhHHHHHHHHhcCcccee
Q 046316 624 NPQQQPDGLVAGSLDLLTMLLKSAST-------DVVKAAYDVCFDAVIRIIL-QSEDHSEMQNATECLATFISGGRQLML 695 (966)
Q Consensus 624 ~~~~~~~~~~~~al~ll~~l~~~~~~-------~l~~~~~~~~fp~l~~~l~-~s~d~~~lq~~~~~l~~~i~~~~~~~~ 695 (966)
.. .......++..+..+++..++ .+.+ ++..++|.+++.+. .+.+.++.+.+..++..++...++.+
T Consensus 530 d~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~-~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~- 604 (1230)
T 1u6g_C 530 DP---FYKITSEALLVTQQLVKVIRPLDQPSSFDATP-YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNL- 604 (1230)
T ss_dssp CS---SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH-HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC-
T ss_pred cc---chHHHHHHHHHHHHHHHHhcCcccccccchHH-HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchh-
Confidence 43 123345678888888865432 4444 35677888888875 34577899999999999999877654
Q ss_pred eeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCC-hhhhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 046316 696 VWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLP-SQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIF 774 (966)
Q Consensus 696 ~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~-~~l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vf 774 (966)
.+++..++.++...+..+ .....+.+.+..+..... ..+.++++.++..+...+. .+....+.+.+..+
T Consensus 605 ------~~~~~~~l~~L~~~l~~e---~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~-~~~~~~r~~a~~al 674 (1230)
T 1u6g_C 605 ------GSDLPNTLQIFLERLKNE---ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR-KNQRALKLGTLSAL 674 (1230)
T ss_dssp ------CTHHHHHHHHHHHHTTSS---SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHH
T ss_pred ------hhhHHHHHHHHHHHhccc---hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 346777888777555422 222233444444433221 2356788888877766543 33467788888888
Q ss_pred HHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccc--cccchhHHHHHHHHHHHccCCc
Q 046316 775 ARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEI--QGAYPIKVTTTALALLLSTRHP 840 (966)
Q Consensus 775 a~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~--~g~~~~K~~~laL~~Ll~~~d~ 840 (966)
++++.. .+.. -....+.+.|....+.+ ......+...-+|++++...++
T Consensus 675 ~~l~~~---~~~~--------------~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~ 725 (1230)
T 1u6g_C 675 DILIKN---YSDS--------------LTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS 725 (1230)
T ss_dssp HHHHHH---CCTT--------------CCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGG
T ss_pred HHHHhc---cccc--------------CCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCch
Confidence 888776 3321 01233455554433332 2344566677777777765543
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.63 E-value=4.4e-13 Score=160.60 Aligned_cols=563 Identities=12% Similarity=0.100 Sum_probs=342.7
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHhccCC-CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhh
Q 046316 79 KLLLSSLDDTHRKICTAISMAVASIAAYDWP-EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPV 157 (966)
Q Consensus 79 ~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P-~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~ 157 (966)
..+++.|.+++..+|..++..++.|+....| ..|++++|.|.+.+ + .+......+..+|..+++.+... .....
T Consensus 13 ~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d-~~~~vr~~~~~~L~~~~~~~~~~---~~~~~ 87 (588)
T 1b3u_A 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-Y-DEDEVLLALAEQLGTFTTLVGGP---EYVHC 87 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-C-CCHHHHHHHHHHHTTCSGGGTSG---GGGGG
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-C-CcHHHHHHHHHHHHHHHhccCcH---HHHHH
Confidence 3577788899999999999999999987655 36999999998876 3 35556667777777666554332 24567
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHH
Q 046316 158 LFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKM 237 (966)
Q Consensus 158 l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~ 237 (966)
++|.+..+..+. +..+|..|+..+..+...+ .+ ..+.+. +++.+..+.+. +.+..|.
T Consensus 88 ll~~L~~l~~~~---~~~vR~~a~~~L~~l~~~~------~~----~~~~~~---l~~~l~~l~~~-------~~~~~R~ 144 (588)
T 1b3u_A 88 LLPPLESLATVE---ETVVRDKAVESLRAISHEH------SP----SDLEAH---FVPLVKRLAGG-------DWFTSRT 144 (588)
T ss_dssp GHHHHHHHTTSS---CHHHHHHHHHHHHHHHTTS------CH----HHHHHT---HHHHHHHHHTC-------SSHHHHH
T ss_pred HHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHC------CH----HHHHHH---HHHHHHHHhcC-------CCcHHHH
Confidence 788887776543 4678888887666654321 11 111122 23444444432 3467888
Q ss_pred HHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhc
Q 046316 238 EVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVG 317 (966)
Q Consensus 238 ~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~ 317 (966)
.++.++..+....+....+ .+++.+.+ ... |++ ..+...+.+.+..+.+
T Consensus 145 ~a~~~l~~~~~~~~~~~~~---~l~~~l~~------------l~~----------d~~------~~VR~~a~~~l~~l~~ 193 (588)
T 1b3u_A 145 SACGLFSVCYPRVSSAVKA---ELRQYFRN------------LCS----------DDT------PMVRRAAASKLGEFAK 193 (588)
T ss_dssp HHGGGHHHHTTTSCHHHHH---HHHHHHHH------------HHT----------CSC------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHH---HHHHHHHH------------HhC----------CCC------HHHHHHHHHHHHHHHH
Confidence 8999888877666543222 22221111 111 111 4677777788877764
Q ss_pred ChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhh-HHHHHHHHH
Q 046316 318 SAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREG-IDAIIDAAS 396 (966)
Q Consensus 318 ~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~-~~~l~~~i~ 396 (966)
.-.-. . ..+.++..+...+ . ++..++|.+|...|..+++..+.+. .+.+++.+.
T Consensus 194 ~~~~~-~---~~~~l~~~l~~~~------------------~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 248 (588)
T 1b3u_A 194 VLELD-N---VKSEIIPMFSNLA------------------S---DEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 248 (588)
T ss_dssp TSCHH-H---HHHTHHHHHHHHH------------------T---CSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHH
T ss_pred HhcHH-h---HHHHHHHHHHHHh------------------c---CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 32111 1 1122333222211 1 1235789999999999999887642 344555555
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHH
Q 046316 397 KRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVAR 476 (966)
Q Consensus 397 ~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~ 476 (966)
+.+. + .+|+.|.++..++|.++..+.... + ...++ ..+...++ ++++-+|..|++.+++
T Consensus 249 ~~~~---------d-~~~~vR~~a~~~l~~l~~~~~~~~------~-~~~l~-~~l~~~l~---d~~~~vr~~a~~~l~~ 307 (588)
T 1b3u_A 249 QAAE---------D-KSWRVRYMVADKFTELQKAVGPEI------T-KTDLV-PAFQNLMK---DCEAEVRAAASHKVKE 307 (588)
T ss_dssp HHHT---------C-SSHHHHHHHHHTHHHHHHHHCHHH------H-HHTHH-HHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHcc---------C-CCHHHHHHHHHHHHHHHHHhCccc------c-hhHHH-HHHHHHhC---CCcHHHHHHHHHHHHH
Confidence 5442 2 359999999999999987542110 0 11112 22223344 7889999999999999
Q ss_pred hhhhcChh-----HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHH
Q 046316 477 FSSAISDG-----VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLV 551 (966)
Q Consensus 477 f~~~~~~~-----~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~ 551 (966)
++..++++ ....+++.+...+. +.+..||..|+.++..+++....+. ..+.++..+..++++.+.++...+
T Consensus 308 ~~~~~~~~~~~~~~~~~l~p~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~Vr~~a 383 (588)
T 1b3u_A 308 FCENLSADCRENVIMSQILPCIKELVS-DANQHVKSALASVIMGLSPILGKDN---TIEHLLPLFLAQLKDECPEVRLNI 383 (588)
T ss_dssp HHHTSCTTTHHHHHHHTHHHHHHHHHT-CSCHHHHHHHHTTGGGGHHHHCHHH---HHHHTHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHhChhhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhhHhH---HHHHHHHHHHHHhCCCchHHHHHH
Confidence 99987643 45566666666655 5577899999999999886532221 234455666677776666777777
Q ss_pred HHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHHHHHhhhcchHhhhcCCCCCCc
Q 046316 552 LETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQLASRILPYVGPILNNPQQQPD 630 (966)
Q Consensus 552 le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~l~~~~lP~l~~~l~~~~~~~~ 630 (966)
++++..+.+.-.. ..+...+.|.+.++ . ...+..+|..+.+++..++.. +.. .+.+.++|.+...+..+ ..
T Consensus 384 ~~~l~~l~~~~~~-~~~~~~~lp~l~~~-~-~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~---~~ 455 (588)
T 1b3u_A 384 ISNLDCVNEVIGI-RQLSQSLLPAIVEL-A-EDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDH---VY 455 (588)
T ss_dssp HTTCHHHHHHSCH-HHHHHHHHHHHHHH-H-TCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCS---SH
T ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHHH-h-cCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCC---cH
Confidence 7777666543210 01112456666655 2 234556788888888888742 221 12346788888887654 23
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHH
Q 046316 631 GLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLD 710 (966)
Q Consensus 631 ~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~ 710 (966)
.....++..++.+++..++.. ....++|.+..++ .+.+..+...++.++..+....+. ..+...++.
T Consensus 456 ~Vr~~a~~~l~~l~~~~~~~~---~~~~llp~l~~~~-~~~~~~~R~~a~~~l~~l~~~~~~---------~~~~~~~~~ 522 (588)
T 1b3u_A 456 AIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMS-GDPNYLHRMTTLFCINVLSEVCGQ---------DITTKHMLP 522 (588)
T ss_dssp HHHHHHHHHHHHHHHHHCHHH---HHHHTHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHH---------HHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHH
Confidence 566788999999988766432 2456678877654 455678888899999888765221 235667777
Q ss_pred HHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 046316 711 AASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFA 775 (966)
Q Consensus 711 i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa 775 (966)
.+.++++... ......+.+.+..+...++.. ++...+..++.++.......++......++
T Consensus 523 ~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~---~~~~~~~p~l~~l~~d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 523 TVLRMAGDPV-ANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp HHHHGGGCSC-HHHHHHHHHHHHHHGGGSCHH---HHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHhhCCCCC-chHHHHHHHHHHHHHHHhchh---hhHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 7777774332 233445566666666666653 222222333344444444555554444443
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.58 E-value=8.1e-12 Score=149.57 Aligned_cols=284 Identities=12% Similarity=0.070 Sum_probs=190.5
Q ss_pred cchhhHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCc
Q 046316 366 YSCRVSGALLLEEVVSYCGRE-----GIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLT 440 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~-----~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~ 440 (966)
..+|.+|...|..+++..+.. ..+.+++.+.+.++ + .+|+.|.+++.+++.++..+.+..
T Consensus 295 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~---------d-~~~~vR~~a~~~l~~l~~~~~~~~----- 359 (588)
T 1b3u_A 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS---------D-ANQHVKSALASVIMGLSPILGKDN----- 359 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT---------C-SCHHHHHHHHTTGGGGHHHHCHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc---------C-CCHHHHHHHHHHHHHHHHHhhHhH-----
Confidence 567999999999999988754 24455555555443 2 358999999999999987653211
Q ss_pred cccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChh-HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 441 SVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDG-VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 441 ~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~-~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
..+.+...+...++ ++++-+|..++..++.+...+..+ ....+++.+...+. +.+..||..++.++..++..
T Consensus 360 ---~~~~l~p~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~-d~~~~vr~~~~~~l~~l~~~ 432 (588)
T 1b3u_A 360 ---TIEHLLPLFLAQLK---DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE-DAKWRVRLAIIEYMPLLAGQ 432 (588)
T ss_dssp ---HHHHTHHHHHHHHT---CSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhC---CCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHH
Confidence 11112222333344 678999999999999998877643 34567777777664 45678999999999998875
Q ss_pred CCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHH
Q 046316 520 ANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEA 599 (966)
Q Consensus 520 ~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~ 599 (966)
...+.+. +.++..+..++.+.+.++...+++++..++..-.. ..+...++|.+.+++ ...++.+|..+.+++..
T Consensus 433 ~~~~~~~---~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~llp~l~~~~--~~~~~~~R~~a~~~l~~ 506 (588)
T 1b3u_A 433 LGVEFFD---EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK-EWAHATIIPKVLAMS--GDPNYLHRMTTLFCINV 506 (588)
T ss_dssp HCGGGCC---HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-HHHHHHTHHHHHHTT--TCSCHHHHHHHHHHHHH
T ss_pred cCHHHHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHH
Confidence 3333333 45567777777777667777777777666543110 001235667766541 23456788888888888
Q ss_pred HHcC-CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhh
Q 046316 600 IKCS-PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQN 678 (966)
Q Consensus 600 l~~~-~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~ 678 (966)
++.. +. ..+.+.++|.+...+..+. ......++..++.+.+..+..+.. ..+.|.+..+ ..+.|.++.+.
T Consensus 507 l~~~~~~--~~~~~~~~~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~~~~---~~~~p~l~~l-~~d~d~~vr~~ 577 (588)
T 1b3u_A 507 LSEVCGQ--DITTKHMLPTVLRMAGDPV---ANVRFNVAKSLQKIGPILDNSTLQ---SEVKPILEKL-TQDQDVDVKYF 577 (588)
T ss_dssp HHHHHHH--HHHHHHTHHHHHHGGGCSC---HHHHHHHHHHHHHHGGGSCHHHHH---HHHHHHHHHH-TTCSSHHHHHH
T ss_pred HHHhcCH--HHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHHHHHHhchhhhH---HHHHHHHHHH-cCCCchhHHHH
Confidence 8742 21 2366789999998887542 245678899999999887654432 2446666664 46778899999
Q ss_pred hHHHHHHH
Q 046316 679 ATECLATF 686 (966)
Q Consensus 679 ~~~~l~~~ 686 (966)
+..++..+
T Consensus 578 a~~al~~l 585 (588)
T 1b3u_A 578 AQEALTVL 585 (588)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99888754
No 20
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.19 E-value=1.6e-06 Score=109.82 Aligned_cols=315 Identities=11% Similarity=0.110 Sum_probs=193.0
Q ss_pred ccchhhHHHHHHHHHHHHh-----Ch-------hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHH
Q 046316 365 TYSCRVSGALLLEEVVSYC-----GR-------EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLL 432 (966)
Q Consensus 365 ~~s~R~aa~~lL~~L~~~~-----~~-------~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~ 432 (966)
.|..|.+|.-.+..+++.. +. ...+.+...+...++. .++.+...|.+++.++|.+++.+.
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~-------~~~~~p~vr~~a~~~lg~~~~~~~ 490 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS-------NNIPHIILRVDAIKYIYTFRNQLT 490 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC-------SSCSCHHHHHHHHHHHHHTGGGSC
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC-------CCCCCceehHHHHHHHHHHHhhCC
Confidence 3677999999999997642 11 1122223344444432 111257899999999999987531
Q ss_pred HhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhc----------Ch----hHHHHHHHHHHhhhc
Q 046316 433 EAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAI----------SD----GVLEHFLSAAITTIA 498 (966)
Q Consensus 433 ~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~----------~~----~~~~~~l~~~~~~L~ 498 (966)
.+ .+...+.. +...+. ++++.+|.+||+++.+|++.. .. +++..+++.++..+.
T Consensus 491 --~~------~l~~~l~~-l~~~L~---d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~ 558 (960)
T 1wa5_C 491 --KA------QLIELMPI-LATFLQ---TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALIL 558 (960)
T ss_dssp --HH------HHHHHHHH-HHHHTT---CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHH
T ss_pred --HH------HHHHHHHH-HHHHhC---CCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHH
Confidence 11 14444443 334454 678999999999999998742 12 456667777777766
Q ss_pred CCCCC----cEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc----Ch-hhHHHHHHHHHHHHhh-cc-hhhc
Q 046316 499 MDVPP----PVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA----RD-ETLHLVLETLQAAIKA-GF-LTAS 567 (966)
Q Consensus 499 ~~~~~----~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~----~~-d~l~~~le~l~~~i~~-~~-~~~~ 567 (966)
..++. .....+..|+..++... .+.+.||...+++.|...+... ++ .....++|+|..++.. ++ ....
T Consensus 559 ~~~~~~~~~~~~e~l~~al~~vv~~~-~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~ 637 (960)
T 1wa5_C 559 KHGSSPEKLAENEFLMRSIFRVLQTS-EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL 637 (960)
T ss_dssp TTCCCHHHHTSCHHHHHHHHHHHHHH-TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred hccCCCCcccccHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH
Confidence 42111 14457888888888764 3578899999999999988764 12 3446789999888875 33 4445
Q ss_pred ccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchH--hhhcCCCCCCchhhHHHHHHHHHHhh
Q 046316 568 MEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVG--PILNNPQQQPDGLVAGSLDLLTMLLK 645 (966)
Q Consensus 568 ~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~--~~l~~~~~~~~~~~~~al~ll~~l~~ 645 (966)
+.+.++|.+..+..+...+ +...+.+++..+......+.++...++|.+. .+++.. +.+...+.++..++.
T Consensus 638 ~~~~~~p~~~~iL~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~L~~~~~ 710 (960)
T 1wa5_C 638 LVDSMMPTFLTVFSEDIQE--FIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELK-----GNIPAVTRLLKSFIK 710 (960)
T ss_dssp HHHHHHHHHHHHHHTTCTT--THHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCT-----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHh--hHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCC-----CCchhHHHHHHHHHH
Confidence 6667888888885543332 3444556665555221333344455666665 555543 356667777877776
Q ss_pred cCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcC
Q 046316 646 SASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLN 717 (966)
Q Consensus 646 ~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~ 717 (966)
..+..+.+ ++.++..+..++. +...+ +.++.++..++.+.+...+ .+|+..++.++...|.
T Consensus 711 ~~~~~~~~--~~~~l~~~~~~~~-~~~~~--~~a~~ll~~i~~~~~~~~~------~~yl~~i~~~l~~~l~ 771 (960)
T 1wa5_C 711 TDSSIFPD--LVPVLGIFQRLIA-SKAYE--VHGFDLLEHIMLLIDMNRL------RPYIKQIAVLLLQRLQ 771 (960)
T ss_dssp HHGGGCSC--SHHHHHHHHHHHT-CTTTH--HHHHHHHHHHHHHSCHHHH------GGGHHHHHHHHHHGGG
T ss_pred hChHHHHH--HHHHHHHHHHHhC-CCccc--chHHHHHHHHHHHCCHHHH------HHHHHHHHHHHHHHHh
Confidence 55433321 1122333333332 22222 7788899999887665522 4689999988775553
No 21
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.19 E-value=1.2e-06 Score=111.38 Aligned_cols=306 Identities=8% Similarity=-0.004 Sum_probs=182.9
Q ss_pred CChhHHHHHHHHHHHhhhhcCh---hHHHHHHHHHHhhhcC-CCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHH
Q 046316 462 QYPFLYARIFASVARFSSAISD---GVLEHFLSAAITTIAM-DVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLA 537 (966)
Q Consensus 462 ~~~~Lr~Ra~~~l~~f~~~~~~---~~~~~~l~~~~~~L~~-~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~ 537 (966)
.+..-+-.|++++|.+++.... +.+.++++ ++..+.. +.+..||..||.++..|.+..... ..+++++++.++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~--~~~l~~vl~~l~ 552 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMEN--PAYIPPAINLLV 552 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHH
Confidence 4566788899999999987643 34556666 4444442 346789999999999998763221 167788888888
Q ss_pred HHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-C-CcHHHHHHhh
Q 046316 538 DLLHQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-P-GCIHQLASRI 614 (966)
Q Consensus 538 ~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~-~~~~~l~~~~ 614 (966)
..++ ..+...+..++...+..-. ....+.+.|+..+.++..+..-+...+..+.+++..+... | +...++...+
T Consensus 553 ~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~l 629 (971)
T 2x1g_F 553 RGLN---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDII 629 (971)
T ss_dssp HHHH---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHhC---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7773 3444444455554443221 2222333455555555443223556777788888888743 4 5555566666
Q ss_pred hcchHhhh----cCCC-CC-CchhhHHHHHHHHHHhhcCCh-------------hHHHHHHHHHhHHHHHHHhc-cCchH
Q 046316 615 LPYVGPIL----NNPQ-QQ-PDGLVAGSLDLLTMLLKSAST-------------DVVKAAYDVCFDAVIRIILQ-SEDHS 674 (966)
Q Consensus 615 lP~l~~~l----~~~~-~~-~~~~~~~al~ll~~l~~~~~~-------------~l~~~~~~~~fp~l~~~l~~-s~d~~ 674 (966)
++.+...+ ++.. .+ .......+++.++.+++...+ ++.+ ++..++|.+..++.. .++.+
T Consensus 630 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~ 708 (971)
T 2x1g_F 630 VSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWVEEID 708 (971)
T ss_dssp HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhccccHH
Confidence 55554443 3321 11 123445677888877764321 2222 456667777776643 34678
Q ss_pred HhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChh--hhHhHHHHHH
Q 046316 675 EMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQ--MAQHIRDLVA 752 (966)
Q Consensus 675 ~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~--l~~~l~~iL~ 752 (966)
+.+.++.++++++..-.+++ .+++..+++.+..-+... . .. .+-.++..++..++.+ ..+.+..++.
T Consensus 709 v~e~~~~~~~~~~~~~~~~~-------~p~l~~~~~~l~~~~~~~-~-~~--~~l~l~~~~i~~~~~~~~~~~~l~~~~~ 777 (971)
T 2x1g_F 709 VLEAACSAMKHAITNLRSSF-------QPMLQDLCLFIVASFQTR-C-CA--PTLEISKTAIVMFFKDEGCKPLMQQLLR 777 (971)
T ss_dssp HHHHHHHHHHHHHHHHHC---------CTHHHHHHHHHHHHCC---C-CH--HHHHHHHHHHTTCCC-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhc-------cccHHHHHHHHHHHHhcC-C-ch--HHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999877544433 467888888776555432 1 12 3567888899988873 3444555554
Q ss_pred HHHHH----HHHh------hhHHHHHHHHHHHHHHHhhcCCCHHHH
Q 046316 753 ALVRR----LQSA------QIAGLRSSLLLIFARLVHMSAPNVEWF 788 (966)
Q Consensus 753 a~~~r----L~~~------~~~~~~~~li~vfa~l~~~~~~~~~~~ 788 (966)
.++.. |.+. ..+.++++++..+.+++.+ +|..+
T Consensus 778 ~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~---~p~~~ 820 (971)
T 2x1g_F 778 EFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKK---IPQVL 820 (971)
T ss_dssp HHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHS---SGGGG
T ss_pred HHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHh---CcHHH
Confidence 44443 3321 3478889999999999888 77654
No 22
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.16 E-value=3.3e-06 Score=107.18 Aligned_cols=347 Identities=10% Similarity=0.038 Sum_probs=205.7
Q ss_pred CCChhHHHHHHHHHHHhhhhcCh---hHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISD---GVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLA 537 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~---~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~ 537 (966)
+.+...+-.++|++|.+++.+.. +.+.++++.+ ..+.. +++.||..|+.++..|.+..... .+++++++..++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~-~~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~ 535 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISI-SNVQLADTVMFTIGALSEWLADH--PVMINSVLPLVL 535 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCC-CSHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCC-CcHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHH
Confidence 45677788899999999988642 4455555532 23332 35679999999999998752111 156666777777
Q ss_pred HHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHc-CC-CcHHHHHHhh
Q 046316 538 DLLHQARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKC-SP-GCIHQLASRI 614 (966)
Q Consensus 538 ~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~-~~-~~~~~l~~~~ 614 (966)
..+.+ ..+...+..++...+..-. ...++...++..+.++..+..-+...+..+.+++..++. .+ +...++.+.+
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l 613 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSL 613 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77654 4555555666665554322 222233344455555533322345677778888888874 44 5667777888
Q ss_pred hcchHhhhc----CCCC-CCchhhHHHHHHHHHHhhcCChh---------------------HHHHHHHHHhHHHHHHHh
Q 046316 615 LPYVGPILN----NPQQ-QPDGLVAGSLDLLTMLLKSASTD---------------------VVKAAYDVCFDAVIRIIL 668 (966)
Q Consensus 615 lP~l~~~l~----~~~~-~~~~~~~~al~ll~~l~~~~~~~---------------------l~~~~~~~~fp~l~~~l~ 668 (966)
++.+...++ ++.. +........++.++.+.+..... -...++..++|.+..++.
T Consensus 614 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 693 (963)
T 2x19_B 614 ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLS 693 (963)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 877766553 2211 11133446788888888765421 122256777777777765
Q ss_pred c-cCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCCh--hhhH
Q 046316 669 Q-SEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPS--QMAQ 745 (966)
Q Consensus 669 ~-s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~--~l~~ 745 (966)
. ..+..+.+.++.+++.++..-++.+ .+++..++..+..-.... .. ..+..++..++..++. ...+
T Consensus 694 ~~~~~~~v~e~~~~~l~~~~~~~~~~~-------~~~l~~~~~~l~~~~~~~-~~---~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 694 KWLNDAQVVEAVCAIFEKSVKTLLDDF-------APMVPQLCEMLGRMYSTI-PQ---ASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSSTT-------GGGHHHHHHHHHHHHHHS-CC---HHHHHHHHHHHHHHTTCTTTCH
T ss_pred hccCchHHHHHHHHHHHHHHHhhcccc-------cccHHHHHHHHHHHHHcC-Cc---cHHHHHHHHHHHHhCCCcchHH
Confidence 3 4467889999999999987644443 356666666544332211 11 1466888888884433 3456
Q ss_pred hHHHHHHHHHHHH----HH--hhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhccccccc
Q 046316 746 HIRDLVAALVRRL----QS--AQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQ 819 (966)
Q Consensus 746 ~l~~iL~a~~~rL----~~--~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~ 819 (966)
.++.++..++... .. .+.+.++++++..+.+++.+ +|..+ +. .+ ..+..++..-...+. ..
T Consensus 763 ~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~---~~~~~---~~---~~---~~~~~i~~~~~~~l~-~~ 829 (963)
T 2x19_B 763 PIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKR---KPDLF---LC---ER---LDVKAVFQCAVLALK-FP 829 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHH---CGGGG---GC---TT---SCHHHHHHHHHHHTT-CS
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHh---CcHHH---cC---Cc---ccHHHHHHHHHHHcC-CC
Confidence 6666666555543 32 13488899999999988887 77653 21 11 125666654444332 22
Q ss_pred ccchhHHHHHHHHHHHcc
Q 046316 820 GAYPIKVTTTALALLLST 837 (966)
Q Consensus 820 g~~~~K~~~laL~~Ll~~ 837 (966)
...-.|.+.-.|..++..
T Consensus 830 ~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 830 EAPTVKASCGFFTELLPR 847 (963)
T ss_dssp CHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 333344455555666543
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.95 E-value=7.1e-08 Score=111.28 Aligned_cols=376 Identities=11% Similarity=0.094 Sum_probs=227.6
Q ss_pred HHHHHHhhh--chHHHHHHHHHHHHHHHhccCCC-------Cccc--------hHHHHHHHhcccCchhhHhHHHHHHHH
Q 046316 79 KLLLSSLDD--THRKICTAISMAVASIAAYDWPE-------DWPD--------LLPFLLKLITDQSNMNGVHGGLRCLAL 141 (966)
Q Consensus 79 ~~Ll~~L~~--~~~kIr~~~a~~Is~Ia~~D~P~-------~WP~--------Ll~~L~~~l~s~~~~~~~~~aL~~L~~ 141 (966)
..|++.+.+ .+..+|..++..+.......|+. .|+. +-..|++.+.+. +... ..+..++..
T Consensus 38 ~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ 115 (462)
T 1ibr_B 38 VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAG 115 (462)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHH
Confidence 345555544 36899999999999988766531 2543 555677777764 5555 778888888
Q ss_pred HHhhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHh
Q 046316 142 LSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIIL 221 (966)
Q Consensus 142 l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L 221 (966)
+.+....+ ..-+.++|.+.+.+++.. .+..+|..++.+++.+..-.. ++.+.++++..++.+..++
T Consensus 116 ia~~~~~~---~~w~~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~----------~~~~~~~~~~ll~~l~~~l 181 (462)
T 1ibr_B 116 IACAEIPV---NQWPELIPQLVANVTNPN-STEHMKESTLEAIGYICQDID----------PEQLQDKSNEILTAIIQGM 181 (462)
T ss_dssp HHHHHGGG---TCCTTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSC----------GGGTGGGHHHHHHHHHHHH
T ss_pred HHHHhccc---cccHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCC----------chhhHhHHHHHHHHHHHHh
Confidence 87653221 124778888888887642 145788888888777654310 2235567778888888888
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccch
Q 046316 222 EHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSL 301 (966)
Q Consensus 222 ~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~ 301 (966)
+.+. ....+|..+++++..+...+...+.... +...+...+. .... +++
T Consensus 182 ~~~~-----~~~~vr~~a~~~l~~~~~~~~~~~~~~~------~~~~l~~~l~----~~~~----------~~~------ 230 (462)
T 1ibr_B 182 RKEE-----PSNNVKLAATNALLNSLEFTKANFDKES------ERHFIMQVVC----EATQ----------CPD------ 230 (462)
T ss_dssp STTC-----CCHHHHHHHHHHHHHHTTTTHHHHTSHH------HHHHHHHHHH----HHTT----------CSS------
T ss_pred CCCC-----CCHHHHHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHH----HhcC----------CCC------
Confidence 7521 1357999999999887643332221110 0111111110 1111 111
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHhHH-HHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHH
Q 046316 302 DSFVIQLFEFLLTIVGSAKLVKVIASNVR-ELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVV 380 (966)
Q Consensus 302 ~~l~~~~~efl~~~~~~~~~~~~l~~~l~-~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~ 380 (966)
..+...+++.+..+++.. .+.+.++++ .++..++..+. +....+|..|.+++..++
T Consensus 231 ~~vr~~~~~~l~~l~~~~--~~~~~~~~~~~l~~~~~~~~~---------------------~~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 231 TRVRVAALQNLVKIMSLY--YQYMETYMGPALFAITIEAMK---------------------SDIDEVALQGIEFWSNVC 287 (462)
T ss_dssp HHHHHHHHHHHHHHHHHC--GGGCTTTTTTTHHHHHHHHHH---------------------CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc---------------------CCchHHHHHHHHHHHHHH
Confidence 356666777777665421 122344555 55554443321 112346778888888887
Q ss_pred HHh-------------------C-hh----hHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHh
Q 046316 381 SYC-------------------G-RE----GIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEV 436 (966)
Q Consensus 381 ~~~-------------------~-~~----~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~ 436 (966)
+.. . .. .++.+++.+.+.+..... ..+...|..|.++..+++.++..+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~---d~~~~~~~~r~~a~~~L~~l~~~~~~--- 361 (462)
T 1ibr_B 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE---NDDDDDWNPCKAAGVCLMLLATCCED--- 361 (462)
T ss_dssp HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCS---SCCTTCCSHHHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccc---ccccccchHHHHHHHHHHHHHHhccH---
Confidence 652 0 01 123444444444432100 00124689999999999999875421
Q ss_pred cCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh----hHHHHHHHHHHhhhcCCCCCcEehhHHHH
Q 046316 437 SGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD----GVLEHFLSAAITTIAMDVPPPVKVGACRA 512 (966)
Q Consensus 437 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~----~~~~~~l~~~~~~L~~~~~~~Vr~~A~~a 512 (966)
.+.+.+..++...++ ++++.+|..|++++|.+++...+ +....+++.++..|. +.+..||..|+.+
T Consensus 362 ------~~~~~~~~~l~~~l~---~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~Vr~~a~~~ 431 (462)
T 1ibr_B 362 ------DIVPHVLPFIKEHIK---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-DPSVVVRDTAAWT 431 (462)
T ss_dssp ------THHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG-CSCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHH
Confidence 122223334444555 78899999999999999986532 345678888888887 4468899999999
Q ss_pred HHhhcccCCCCC-ccccHHHHHHHHHHHH
Q 046316 513 LSELLPKANKGN-FQPQMMGLFSSLADLL 540 (966)
Q Consensus 513 l~~~~~~~~~~~-l~p~l~~il~~L~~ll 540 (966)
+.++++...+.. ..+++++++..|++.+
T Consensus 432 l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 432 VGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 999998743333 3588998888887654
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.90 E-value=4.8e-07 Score=107.90 Aligned_cols=431 Identities=14% Similarity=0.134 Sum_probs=234.2
Q ss_pred HHHHHHhcCCCHHHhHHHHHHHHhhcc-Cc-HHHHHHHHhhhcccccccccc-------CCCCChHHHHHHHHHHHHHhh
Q 046316 16 LNCLSATLDPNQEVRSFAEVSLNQASL-QP-AAVLLKHFIKKHWQEGEESFE-------LPAVSSEEKEVIRKLLLSSLD 86 (966)
Q Consensus 16 ~~~L~~~ls~d~~~R~~AE~~L~~~~~-~p-A~i~LKn~I~~~W~~~~~~~~-------~~~i~~~~K~~IR~~Ll~~L~ 86 (966)
.+++....|+|...|+.+-..+..+.+ .| -+++.-|.+.+.-....+..+ +.-.+++--..+-..+.++|.
T Consensus 52 ~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~ 131 (591)
T 2vgl_B 52 PDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 131 (591)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Confidence 344445567777778777777776655 34 223333444443332111100 111233344455556777888
Q ss_pred hchHHHHHHHHHHHHHHHhccCCCCcc--chHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 046316 87 DTHRKICTAISMAVASIAAYDWPEDWP--DLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHT 164 (966)
Q Consensus 87 ~~~~kIr~~~a~~Is~Ia~~D~P~~WP--~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~ 164 (966)
++++.||+.++.++.+|++. .|+.++ ++++.+.+++.++ |+..+.+|+.+|.+++.+-.+.....+.+..++.|++
T Consensus 132 d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~ 209 (591)
T 2vgl_B 132 DEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDSLRDLIADS-NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLT 209 (591)
T ss_dssp CSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhh-ChhhcccccHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHH
Confidence 99999999999999999995 499888 5999999999874 8889999999999998764322111222333333333
Q ss_pred HhcCCCCCcHHHHHHHHHHH------------------------------HHHHHHHHhhhc-c-chhHHHHhhHhhhHH
Q 046316 165 IVSFPESYDRYVRTKALSIV------------------------------YSCTAMLGVMSG-V-CKTEMFALMMPMLKP 212 (966)
Q Consensus 165 i~~~~~~~~~~~r~~al~i~------------------------------~~~~~~l~~~~~-~-~~~~~~~~~~~~l~~ 212 (966)
.+.... +-.+..+++++ ..|+..+..+.. . .. ++.+...+..
T Consensus 210 ~l~~~~---~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~---~~~~~~~~~~ 283 (591)
T 2vgl_B 210 ALNECT---EWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD---SDYYNMLLKK 283 (591)
T ss_dssp HHHHCC---HHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBT---TBSHHHHHHH
T ss_pred cCCCCC---chHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCC---HHHHHHHHHH
Confidence 332111 11111111111 111111111110 0 00 0111111222
Q ss_pred HHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCc
Q 046316 213 WMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRY 292 (966)
Q Consensus 213 w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~ 292 (966)
....++.++. ++-.+|.-+++.+..+...+|+.+.+++..+ .. .+
T Consensus 284 ~~~~L~~L~~--------~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~--------------------~~-------~~ 328 (591)
T 2vgl_B 284 LAPPLVTLLS--------GEPEVQYVALRNINLIVQKRPEILKQEIKVF--------------------FV-------KY 328 (591)
T ss_dssp THHHHHHHTT--------SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT--------------------SC-------CT
T ss_pred HHHHHHHHhc--------CCccHHHHHHHHHHHHHHhChHHHHHHHHhh--------------------ee-------cc
Confidence 2223333322 1235777778888888877777655543211 00 01
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHH
Q 046316 293 DSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSG 372 (966)
Q Consensus 293 d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa 372 (966)
+ | . ..+...+++.+..++.... +..++..+..|+.- . ....|..+
T Consensus 329 ~-d----~-~~Ir~~al~~L~~l~~~~n--------v~~iv~~L~~~l~~------------------~---d~~~r~~~ 373 (591)
T 2vgl_B 329 N-D----P-IYVKLEKLDIMIRLASQAN--------IAQVLAELKEYATE------------------V---DVDFVRKA 373 (591)
T ss_dssp T-S----C-HHHHHHHHHHHHHTCCSST--------HHHHHHHHHHHTTS------------------S---CHHHHHHH
T ss_pred C-C----h-HHHHHHHHHHHHHHCChhh--------HHHHHHHHHHHHhc------------------C---CHHHHHHH
Confidence 1 1 1 4577788899988775433 23344444444321 1 13458888
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHH
Q 046316 373 ALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMI 452 (966)
Q Consensus 373 ~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i 452 (966)
..-+..++.+|+.. ...+++.+.+.+.. ..+|..+|+ +.+++.+... ... ....-+.. +.
T Consensus 374 v~aI~~la~~~~~~-~~~~v~~Ll~ll~~---------~~~~v~~e~-i~~l~~ii~~---~p~--~~~~~v~~-L~--- 433 (591)
T 2vgl_B 374 VRAIGRCAIKVEQS-AERCVSTLLDLIQT---------KVNYVVQEA-IVVIRDIFRK---YPN--KYESIIAT-LC--- 433 (591)
T ss_dssp HHHHHHHHTTCHHH-HHHHHHHHHHHHHT---------CCHHHHHHH-HHHHHHHHHH---SCS--SCCTTHHH-HH---
T ss_pred HHHHHHHHHhChhH-HHHHHHHHHHHHcc---------cchHHHHHH-HHHHHHHHHH---Ccc--hHHHHHHH-HH---
Confidence 88899999988643 45566666666653 234556666 4455554322 111 00111222 21
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHH
Q 046316 453 TEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGL 532 (966)
Q Consensus 453 ~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~i 532 (966)
..+. ....|-+|..++|++|+|+...+. ...+++.+++.+. +.+..||..+++|+..+....+ +..+ +.
T Consensus 434 -~~l~--~~~~~~~~~~~~wilGey~~~~~~--~~~~l~~l~~~~~-~~~~~vr~~~l~a~~Kl~~~~p-~~~~----~~ 502 (591)
T 2vgl_B 434 -ENLD--SLDEPDARAAMIWIVGEYAERIDN--ADELLESFLEGFH-DESTQVQLTLLTAIVKLFLKKP-SETQ----EL 502 (591)
T ss_dssp -HTTT--TCCSHHHHHHHHHHHHTTCTTCTT--HHHHHHHHSTTCS-SSCHHHHHHHHHHHHHHHTTCC-STTH----HH
T ss_pred -HHHH--hccCHHHHHHHHHHHHcccccccC--HHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHhcCc-hHHH----HH
Confidence 2232 246788899999999999988742 3456666666654 3366899999999998876532 2222 33
Q ss_pred HHHHHHHH-hhcCh-hhHHHHHHHH
Q 046316 533 FSSLADLL-HQARD-ETLHLVLETL 555 (966)
Q Consensus 533 l~~L~~ll-~~~~~-d~l~~~le~l 555 (966)
++.+++.. .+..+ |..-.+.+.+
T Consensus 503 i~~ll~~~~~d~~d~evrdRA~~y~ 527 (591)
T 2vgl_B 503 VQQVLSLATQDSDNPDLRDRGYIYW 527 (591)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCChHHHHHHHHHH
Confidence 44444443 33233 5555544433
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.83 E-value=4.8e-07 Score=103.95 Aligned_cols=390 Identities=7% Similarity=0.038 Sum_probs=225.9
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHhccC-CC-C----ccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhh
Q 046316 80 LLLSSLDDTHRKICTAISMAVASIAAYDW-PE-D----WPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPK 153 (966)
Q Consensus 80 ~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~-P~-~----WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~ 153 (966)
.|++.|.+++..+|..++.++..++.... |. . =+++++.|++.+++.+++.....|+.+|..++..-.+ ....
T Consensus 24 ~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 102 (450)
T 2jdq_A 24 DMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-QTRI 102 (450)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-HHHH
Confidence 46677778889999999999999876332 22 1 1278999999998754778889999999998863222 1111
Q ss_pred -hhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCCh
Q 046316 154 -LVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDD 232 (966)
Q Consensus 154 -i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~ 232 (966)
+-...+|.|.+++.+. +..+|..|+.++..+... ........+. ...++.+..+++.. .+
T Consensus 103 ~~~~~~i~~L~~lL~~~---~~~vr~~a~~~L~~l~~~-------~~~~~~~~~~---~~~i~~L~~~l~~~------~~ 163 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSE---FEDVQEQAVWALGNIAGD-------STMCRDYVLD---CNILPPLLQLFSKQ------NR 163 (450)
T ss_dssp HHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTT-------CHHHHHHHHH---TTCHHHHHHHTTSC------CC
T ss_pred HHhCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHccC-------CHHHHHHHHH---CCCHHHHHHHhcCC------CC
Confidence 2256789999999864 467888777766654421 1111111111 12345556666531 34
Q ss_pred hhHHHHHHHHHHHHHHhc-chhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHH
Q 046316 233 WGVKMEVLKCLNQFIQNF-PSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEF 311 (966)
Q Consensus 233 ~~lk~~~~~~L~~l~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~ef 311 (966)
..++..++.+|..+.... +..-.......++.+.+. +.. .+ ..+...++..
T Consensus 164 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~------------l~~----------~~------~~v~~~a~~~ 215 (450)
T 2jdq_A 164 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL------------LFV----------SD------TDVLADACWA 215 (450)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHH------------TTC----------CC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH------------Hcc----------CC------HHHHHHHHHH
Confidence 679999999999988544 321111112222221111 110 11 4677778888
Q ss_pred HHHHhcCh-hHHHHH-HHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhh--
Q 046316 312 LLTIVGSA-KLVKVI-ASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREG-- 387 (966)
Q Consensus 312 l~~~~~~~-~~~~~l-~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~-- 387 (966)
+..+.... .....+ .. .++..++.++.- ....+|..|...|..++...+...
T Consensus 216 L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~ 271 (450)
T 2jdq_A 216 LSYLSDGPNDKIQAVIDA---GVCRRLVELLMH---------------------NDYKVVSPALRAVGNIVTGDDIQTQV 271 (450)
T ss_dssp HHHHTSSSHHHHHHHHHT---TTHHHHHHHTTC---------------------SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHCCCcHHHHHHHHc---CcHHHHHHHHCC---------------------CchhHHHHHHHHHHHHhhCChHHHHH
Confidence 88877643 222221 21 134444444421 123567888888888876432211
Q ss_pred -H-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChh
Q 046316 388 -I-DAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPF 465 (966)
Q Consensus 388 -~-~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 465 (966)
. ..+++.+.+.+. + ..+..|++++.+++.++....+.... .....+ +. .+...+. ++++-
T Consensus 272 ~~~~~~l~~L~~ll~---------~-~~~~vr~~a~~~L~~l~~~~~~~~~~-~~~~~~---l~-~L~~~l~---~~~~~ 333 (450)
T 2jdq_A 272 ILNCSALQSLLHLLS---------S-PKESIKKEACWTISNITAGNRAQIQT-VIDANI---FP-ALISILQ---TAEFR 333 (450)
T ss_dssp HHTTTHHHHHHHHTT---------C-SSHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTH---HH-HHHHHHH---HSCHH
T ss_pred HHHCccHHHHHHHHc---------C-CCHHHHHHHHHHHHHHHcCCHHHHHH-HHHCCC---HH-HHHHHHh---cCCHH
Confidence 0 123344444443 2 24799999999999987421111100 000011 22 2223344 56789
Q ss_pred HHHHHHHHHHHhhhhcChhHHH-----HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCC------CCCccccHHHH--
Q 046316 466 LYARIFASVARFSSAISDGVLE-----HFLSAAITTIAMDVPPPVKVGACRALSELLPKAN------KGNFQPQMMGL-- 532 (966)
Q Consensus 466 Lr~Ra~~~l~~f~~~~~~~~~~-----~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~------~~~l~p~l~~i-- 532 (966)
+|..|+|+++.++...+++... .+++.++..|.. .+..||..|+.||.+++.... ...+.||...+
T Consensus 334 v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~ 412 (450)
T 2jdq_A 334 TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEE 412 (450)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHH
Confidence 9999999999998765443333 356667777764 367899999999999987531 12345666655
Q ss_pred ---HHHHHHHHhhcChhhHHHHHHHHHHHHh
Q 046316 533 ---FSSLADLLHQARDETLHLVLETLQAAIK 560 (966)
Q Consensus 533 ---l~~L~~ll~~~~~d~l~~~le~l~~~i~ 560 (966)
++.|..+....+.+....++..|...++
T Consensus 413 ~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 413 AYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 4566666555444555555555555553
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.66 E-value=9.4e-06 Score=96.71 Aligned_cols=466 Identities=11% Similarity=0.094 Sum_probs=254.9
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchH----HHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhh
Q 046316 81 LLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLL----PFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVP 156 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll----~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~ 156 (966)
+++++.+++..+|+....++..++.. -|++. +.+.+.+++ .|+..+..|+++|..+. -..+.+
T Consensus 54 vi~l~~s~~~~~Krl~yl~l~~~~~~-----~~e~~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~-------~~~~~~ 120 (591)
T 2vgl_B 54 VVNCMQTDNLELKKLVYLYLMNYAKS-----QPDMAIMAVNSFVKDCED-PNPLIRALAVRTMGCIR-------VDKITE 120 (591)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHH-----SHHHHHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCC-------SGGGHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHccc-----CchHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC-------hHHHHH
Confidence 34456778888888888888888764 24443 344444555 36777778888876654 234667
Q ss_pred hHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHH
Q 046316 157 VLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVK 236 (966)
Q Consensus 157 ~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk 236 (966)
.++|.+.+.+.+. ++.+|+.|+..+..+... ++ +.+.+ ..|++.+..+|+. .+..++
T Consensus 121 ~l~~~l~~~L~d~---~~~VRk~A~~al~~i~~~-------~p----~~~~~--~~~~~~l~~lL~d-------~d~~V~ 177 (591)
T 2vgl_B 121 YLCEPLRKCLKDE---DPYVRKTAAVCVAKLHDI-------NA----QMVED--QGFLDSLRDLIAD-------SNPMVV 177 (591)
T ss_dssp HHHHHHHHHSSCS---CHHHHHHHHHHHHHHHHS-------SC----CCHHH--HHHHHHHHHTTSC-------SCHHHH
T ss_pred HHHHHHHHHcCCC---ChHHHHHHHHHHHHHHhh-------Ch----hhccc--ccHHHHHHHHhCC-------CChhHH
Confidence 7788888888754 578998877755554431 11 11111 3688888888864 235788
Q ss_pred HHHHHHHHHHHHhcchh-hHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHH
Q 046316 237 MEVLKCLNQFIQNFPSL-AESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTI 315 (966)
Q Consensus 237 ~~~~~~L~~l~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~ 315 (966)
..++..|..+...-++. ........+..+.+.+.. . + +-....+++.+...
T Consensus 178 ~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~-----------~---------~--------~~~q~~il~~l~~l 229 (591)
T 2vgl_B 178 ANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE-----------C---------T--------EWGQIFILDCLSNY 229 (591)
T ss_dssp HHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH-----------C---------C--------HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC-----------C---------C--------chHHHHHHHHHHHh
Confidence 99999999887765532 111111112211111110 0 0 22334555555544
Q ss_pred hcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHh--ChhhHHHHHH
Q 046316 316 VGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYC--GREGIDAIID 393 (966)
Q Consensus 316 ~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~--~~~~~~~l~~ 393 (966)
..... +....++..+.+.++ +...++|..|..++..+.... ..+.+..+..
T Consensus 230 ~~~~~------~~~~~~l~~l~~~l~---------------------~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~ 282 (591)
T 2vgl_B 230 NPKDD------REAQSICERVTPRLS---------------------HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK 282 (591)
T ss_dssp CCCSH------HHHHHHHHHHTTCSC---------------------SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH
T ss_pred CCCCh------HHHHHHHHHHHHHHc---------------------CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 32211 111223333333221 123577888888887775433 2233433333
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHH
Q 046316 394 AASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFAS 473 (966)
Q Consensus 394 ~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~ 473 (966)
.+...+.... + .+...|.+++.+++.+... ..+ . +...+.. + +.. .+....+|.+|+++
T Consensus 283 ~~~~~L~~L~------~-~d~~vr~~aL~~l~~i~~~----~p~----~-~~~~~~~-~---~~~-~~d~~~Ir~~al~~ 341 (591)
T 2vgl_B 283 KLAPPLVTLL------S-GEPEVQYVALRNINLIVQK----RPE----I-LKQEIKV-F---FVK-YNDPIYVKLEKLDI 341 (591)
T ss_dssp HTHHHHHHHT------T-SCHHHHHHHHHHHHHHHHH----CCS----T-TTTCTTT-T---SCC-TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHh------c-CCccHHHHHHHHHHHHHHh----ChH----H-HHHHHHh-h---eec-cCChHHHHHHHHHH
Confidence 2222211110 1 1346899999999888652 110 0 1111111 1 111 12338999999999
Q ss_pred HHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHH
Q 046316 474 VARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLE 553 (966)
Q Consensus 474 l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le 553 (966)
+++++.. +....++..+...+. +.+..+|..|++++..++.. ..+.....+..|++++....+.....++.
T Consensus 342 L~~l~~~---~nv~~iv~~L~~~l~-~~d~~~r~~~v~aI~~la~~-----~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~ 412 (591)
T 2vgl_B 342 MIRLASQ---ANIAQVLAELKEYAT-EVDVDFVRKAVRAIGRCAIK-----VEQSAERCVSTLLDLIQTKVNYVVQEAIV 412 (591)
T ss_dssp HHHTCCS---STHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHCCh---hhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHh-----ChhHHHHHHHHHHHHHcccchHHHHHHHH
Confidence 9998644 345567777777765 34667899999999998864 34556778889999998877777667777
Q ss_pred HHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHHHHHhhhcchHhhhcCCCCCCchh
Q 046316 554 TLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQLASRILPYVGPILNNPQQQPDGL 632 (966)
Q Consensus 554 ~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~l~~~~lP~l~~~l~~~~~~~~~~ 632 (966)
++..++...+ .....+++.+.+. .....+|..+..+.-++...+.. ++ -. . .+..+++.-..+....
T Consensus 413 ~l~~ii~~~p---~~~~~~v~~L~~~-l~~~~~~~~~~~~~wilGey~~~~~~-~~----~---~l~~l~~~~~~~~~~v 480 (591)
T 2vgl_B 413 VIRDIFRKYP---NKYESIIATLCEN-LDSLDEPDARAAMIWIVGEYAERIDN-AD----E---LLESFLEGFHDESTQV 480 (591)
T ss_dssp HHHHHHHHSC---SSCCTTHHHHHHT-TTTCCSHHHHHHHHHHHHTTCTTCTT-HH----H---HHHHHSTTCSSSCHHH
T ss_pred HHHHHHHHCc---chHHHHHHHHHHH-HHhccCHHHHHHHHHHHHcccccccC-HH----H---HHHHHHHhhccCCHHH
Confidence 8877776544 1112334544443 22345666666665555554422 21 11 1 1222222211111223
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHh-ccCchHHhhhhHHHHH
Q 046316 633 VAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIIL-QSEDHSEMQNATECLA 684 (966)
Q Consensus 633 ~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~-~s~d~~~lq~~~~~l~ 684 (966)
...++..+.-+....|+...+ .+..+++... .+.|.++.+.|.+.++
T Consensus 481 r~~~l~a~~Kl~~~~p~~~~~-----~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 481 QLTLLTAIVKLFLKKPSETQE-----LVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHHHHHHHHTTCCSTTHH-----HHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCchHHHH-----HHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 334444444444444433212 1344455443 4567899998876654
No 27
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.61 E-value=4e-05 Score=92.49 Aligned_cols=511 Identities=10% Similarity=0.031 Sum_probs=286.6
Q ss_pred hHHHHHHHHHHHHHHHhccCC----CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc---cchhhhhhhHHHH
Q 046316 89 HRKICTAISMAVASIAAYDWP----EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD---AIVPKLVPVLFPV 161 (966)
Q Consensus 89 ~~kIr~~~a~~Is~Ia~~D~P----~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~---~~~~~i~~~l~p~ 161 (966)
....|.+++.|+++|-...+. +.+.+++...++..-..++.+....|..++..++---.+ ..+ .-...+|.
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~--~~~G~v~~ 294 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVV--AREGILQM 294 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHH--HTTTHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHH--hccchHHH
Confidence 457889999999998776665 356666666655433334555566677777777653222 111 12356788
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHH
Q 046316 162 LHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLK 241 (966)
Q Consensus 162 L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~ 241 (966)
+..++++.. ..++..|+.++..+.. . .+..+++.+.- .+.+..+++. ++-.+|.|+.-
T Consensus 295 li~Ll~s~~---~~~q~~A~~al~~aa~--------~-~~~R~~I~~~g---v~~L~~Ll~s-------~~~~vr~~Al~ 352 (810)
T 3now_A 295 ILAMATTDD---ELQQRVACECLIAASS--------K-KDKAKALCEQG---VDILKRLYHS-------KNDGIRVRALV 352 (810)
T ss_dssp HHHHHHSSC---HHHHHHHHHHHHHHTT--------S-HHHHHTTHHHH---HHHHHHHTTC-------SCHHHHHHHHH
T ss_pred HHHHhCCCC---HHHHHHHHHHHHHHcC--------C-cHHHHHHHHcC---cHHHHHHHcC-------CCHHHHHHHHH
Confidence 888887763 4566667666665331 1 22344444432 2556666653 12357889999
Q ss_pred HHHHHHHhcc-----hhhHH-hhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHH
Q 046316 242 CLNQFIQNFP-----SLAES-EFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTI 315 (966)
Q Consensus 242 ~L~~l~~~f~-----~~~~~-~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~ 315 (966)
+|.++...+. +.+.. .+..+++.+.+.+.+ . ..| .+....+++-|..+
T Consensus 353 ~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~-----------~-------~~d--------~~v~~~AveaLayL 406 (810)
T 3now_A 353 GLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIK-----------P-------GKD--------KDIRRWAADGLAYL 406 (810)
T ss_dssp HHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHC-----------S-------SCC--------SSHHHHHHHHHHHH
T ss_pred HHHHhccccccCccccchhhccHHHHHHHHHHHhcC-----------C-------CCC--------HHHHHHHHHHHHHH
Confidence 9999986442 22321 122333333332221 0 011 23556777777777
Q ss_pred hcChhHHHHHH---HhHHHHHHHHHHhhcCCHHHH---HHHhhCHHHHhhccc-C----C-----ccc--------hhhH
Q 046316 316 VGSAKLVKVIA---SNVRELVYHTIAFLQMTEQQI---HIWSIDANQFLADED-E----S-----TYS--------CRVS 371 (966)
Q Consensus 316 ~~~~~~~~~l~---~~l~~li~~li~~~~lt~ed~---e~w~~Dp~~fv~de~-d----~-----~~s--------~R~a 371 (966)
...+..+..+. ..++.++..+ .-.+..+ -.|.- .-.....+ . . .|+ +...
T Consensus 407 S~~~~vk~~lv~d~g~Ip~LV~LL----~s~d~~i~~~al~~L--~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 407 TLDAECKEKLIEDKASIHALMDLA----RGGNQSCLYGVVTTF--VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp TTSHHHHHHHHHCHHHHHHHHHHH----HTTCGGGHHHHHHHH--HHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHH
T ss_pred hCCcHHHHHHHHccchHHHHHHHh----CCCChHHHHHHHHHH--HHHcCCchhhhhhHHHHHHHHHhhccCcccccccc
Confidence 76766665443 2334443332 1100000 00000 00000000 0 0 000 0000
Q ss_pred HHHHH----HHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHH
Q 046316 372 GALLL----EEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGEL 447 (966)
Q Consensus 372 a~~lL----~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~ 447 (966)
.+.. ..+.+. ..++.+.+++.+ .....||.+..+++.++.. .+.... ...-...+
T Consensus 481 -~~~v~~r~~~Vvea-------GaVp~LV~LL~s----------~s~~vqe~Aa~aL~NLA~d-~~~r~~-Vv~~Gaip- 539 (810)
T 3now_A 481 -VDFINKRITVLANE-------GITTALCALAKT----------ESHNSQELIARVLNAVCGL-KELRGK-VVQEGGVK- 539 (810)
T ss_dssp -HHHHHHHHHHHHHT-------THHHHHHHHHTC----------CCHHHHHHHHHHHHHHHTS-HHHHHH-HHHTTHHH-
T ss_pred -HHHHHHHHHHHHHC-------cCHHHHHHHHcC----------CCHHHHHHHHHHHHHHcCC-HHHHHH-HHHCCCHH-
Confidence 0111 112211 123333344432 1247899999999999843 111110 00011111
Q ss_pred HHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhH------HHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCC
Q 046316 448 LEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGV------LEHFLSAAITTIAMDVPPPVKVGACRALSELLPKAN 521 (966)
Q Consensus 448 l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~------~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~ 521 (966)
.+...++ +..+-.|..|+|++++++...+++. ....++.++..|.++.+...+..|+.||.+++....
T Consensus 540 ---~Lv~LL~---s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 540 ---ALLRMAL---EGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613 (810)
T ss_dssp ---HHHHHHH---SSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred ---HHHHHHc---cCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence 1222344 5677889999999999987654432 234567777777644333445689999999987521
Q ss_pred --C-CCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhccc-ccchHHHHHHHHhhcCChhHHHHHHHH
Q 046316 522 --K-GNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASME-PMISPLILNIWALHVSDPFISIDAIEV 596 (966)
Q Consensus 522 --~-~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~-~~l~p~~l~l~~~~~~d~~~~~~~~~~ 596 (966)
. ..+.. ..+..|..++..........+.++|..+...+. .+.-.. ...+|.++.+ .. ..|..++..+..+
T Consensus 614 ~~~~~Ii~a---G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~L-L~-s~d~~vq~~Aa~A 688 (810)
T 3now_A 614 SVRQRIIKE---QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL-CE-DEDEETATACAGA 688 (810)
T ss_dssp HHHHHHHHT---THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHG-GG-CSSHHHHHHHHHH
T ss_pred HHHHHHHHc---CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHH-hc-CCCHHHHHHHHHH
Confidence 1 11111 245677777777777788888888888765433 211111 2456777777 32 3567788888899
Q ss_pred HHHHHc-CCCcHHHHH--HhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHH-HHHhHHHHHHHhcc--
Q 046316 597 LEAIKC-SPGCIHQLA--SRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAY-DVCFDAVIRIILQS-- 670 (966)
Q Consensus 597 l~~l~~-~~~~~~~l~--~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~-~~~fp~l~~~l~~s-- 670 (966)
|..|+. .+.....+. ...+|.+...+.++ .......|+..+..++.+.+ .....+. .-++|+|.+++..+
T Consensus 689 LanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~---d~~vq~~A~~aL~NL~~~s~-e~~~~l~e~G~i~~L~~LL~~~d~ 764 (810)
T 3now_A 689 LAIITSVSVKCCEKILAIASWLDILHTLIANP---SPAVQHRGIVIILNMINAGE-EIAKKLFETDIMELLSGLGQLPDD 764 (810)
T ss_dssp HHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHTTCH-HHHHHHHTSTHHHHHTTSCCCTTS
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC---CHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHhCccc
Confidence 999985 566555555 47899999999864 23567788888888888543 3333333 23678888887644
Q ss_pred CchHHhhhhHHHHHHHHhcCc
Q 046316 671 EDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 671 ~d~~~lq~~~~~l~~~i~~~~ 691 (966)
.+..+.+-+.++|.+++.+|-
T Consensus 765 ~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 765 TRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp TTHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHhCCC
Confidence 478899999999999998864
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.59 E-value=3.1e-06 Score=97.14 Aligned_cols=300 Identities=11% Similarity=0.088 Sum_probs=187.3
Q ss_pred cchhhHHHHHHHHHHHHhChhhHH------HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCC
Q 046316 366 YSCRVSGALLLEEVVSYCGREGID------AIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGL 439 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~~~~------~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~ 439 (966)
..+|..|...|..+.......... .+++.+.+.+.. ..++..+..++.+++.++..-.+.... .
T Consensus 34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~-~ 103 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR---------KENCTLQFESAWVLTNIASGNSLQTRI-V 103 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTC---------TTCHHHHHHHHHHHHHHHSSCHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCC---------CCCHHHHHHHHHHHHHHhcCCHHHHHH-H
Confidence 346888888888876532221111 234444444432 224678888888888886421111000 0
Q ss_pred ccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHH-----HHHHHHHHhhhcCCCCCcEehhHHHHHH
Q 046316 440 TSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVL-----EHFLSAAITTIAMDVPPPVKVGACRALS 514 (966)
Q Consensus 440 ~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~-----~~~l~~~~~~L~~~~~~~Vr~~A~~al~ 514 (966)
..-+. +. .+...++ ++++-+|..|+|+++.++...+ +.. ...++.++..|.++.+..||..|+.++.
T Consensus 104 ~~~~~---i~-~L~~lL~---~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 104 IQAGA---VP-IFIELLS---SEFEDVQEQAVWALGNIAGDST-MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175 (450)
T ss_dssp HHTTH---HH-HHHHHTT---CSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HhCCC---HH-HHHHHHc---CCCHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 00011 22 2223344 6789999999999999987532 111 1356677777775456789999999999
Q ss_pred hhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc--hhhcccccchHHHHHHHHhhcCChhHHHH
Q 046316 515 ELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF--LTASMEPMISPLILNIWALHVSDPFISID 592 (966)
Q Consensus 515 ~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~--~~~~~~~~l~p~~l~l~~~~~~d~~~~~~ 592 (966)
+++....+..-...+..++..|.+++...+.+....++.++.......+ ...-....++|.++++. ...++.++..
T Consensus 176 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~ 253 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL--MHNDYKVVSP 253 (450)
T ss_dssp HHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT--TCSCHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH--CCCchhHHHH
Confidence 9997531111223335566677778877666777778888877665322 11111234668887773 2457788888
Q ss_pred HHHHHHHHHcCCC-cHHH-HHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHH-HHHhHHHHHHHhc
Q 046316 593 AIEVLEAIKCSPG-CIHQ-LASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAY-DVCFDAVIRIILQ 669 (966)
Q Consensus 593 ~~~~l~~l~~~~~-~~~~-l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~-~~~fp~l~~~l~~ 669 (966)
+..++..++...+ .... +...++|.+...+..+ .......++..++.+..+.+..... ++ ..++|.+++++.
T Consensus 254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~vr~~a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~~l~- 328 (450)
T 2jdq_A 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP---KESIKKEACWTISNITAGNRAQIQT-VIDANIFPALISILQ- 328 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS---SHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTHHHHHHHHHH-
T ss_pred HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHH-HHHCCCHHHHHHHHh-
Confidence 8888888875432 2222 2236888888888764 2356778888999988765432222 23 356788888875
Q ss_pred cCchHHhhhhHHHHHHHHhcC
Q 046316 670 SEDHSEMQNATECLATFISGG 690 (966)
Q Consensus 670 s~d~~~lq~~~~~l~~~i~~~ 690 (966)
+.+..+...++.+|.++...+
T Consensus 329 ~~~~~v~~~a~~~L~~l~~~~ 349 (450)
T 2jdq_A 329 TAEFRTRKEAAWAITNATSGG 349 (450)
T ss_dssp HSCHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHcCC
Confidence 557889999999999998864
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.58 E-value=4.3e-05 Score=94.01 Aligned_cols=510 Identities=11% Similarity=0.067 Sum_probs=270.5
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhH
Q 046316 79 KLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVL 158 (966)
Q Consensus 79 ~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l 158 (966)
..+++.|.+++..+|.+++..+..+.+...+ ...+|.|+.+|.+ +++.....|+.+|..++.+........-.+..
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~---~g~ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQDDAELA---TRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhhHHHHH---hCCHHHHHHHHCC-CCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 3566777777778888888888776554433 4567777788876 48888999999999998754322111112467
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHH
Q 046316 159 FPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKME 238 (966)
Q Consensus 159 ~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~ 238 (966)
++.|.+++.+.. +..+|..|+..++.+.. . ... ...+... .-++.++.+|+.+ +..++..
T Consensus 194 i~~Lv~~L~~~~--d~~vr~~Aa~aL~~Ls~----~----~~~-~~~i~~~--g~I~~Lv~lL~~~-------~~~v~~~ 253 (780)
T 2z6g_A 194 VSAIVRTMQNTN--DVETARCTSGTLHNLSH----H----REG-LLAIFKS--GGIPALVNMLGSP-------VDSVLFH 253 (780)
T ss_dssp HHHHHHHHHHCC--CHHHHHHHHHHHHHHHT----S----HHH-HHHHHHT--THHHHHHHHTTCS-------CHHHHHH
T ss_pred HHHHHHHHcCCC--CHHHHHHHHHHHHHHhC----C----chh-HHHHHHc--CCHHHHHHHHcCC-------CHHHHHH
Confidence 888888886542 46788777776665321 1 111 1111111 3466777777652 3468999
Q ss_pred HHHHHHHHHHhcchhhHHhhH-HHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhc
Q 046316 239 VLKCLNQFIQNFPSLAESEFL-VVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVG 317 (966)
Q Consensus 239 ~~~~L~~l~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~ 317 (966)
++.+|..+...++..-..... ..++.+.+ .+.. ++ ..+...+..++..|.. .
T Consensus 254 A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~------------lL~~----------~~---~~v~~~a~~aL~~La~--~ 306 (780)
T 2z6g_A 254 AITTLHNLLLHQEGAKMAVRLAGGLQKMVA------------LLNK----------TN---VKFLAITTDCLQILAY--G 306 (780)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHTTHHHHHHH------------GGGC----------CC---HHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHhCCChhhHHHHHHcCCHHHHHH------------HHhc----------CC---HHHHHHHHHHHHHHhc--C
Confidence 999999998876542111110 12221111 1110 00 1112333334443331 2
Q ss_pred ChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHH-----H
Q 046316 318 SAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAI-----I 392 (966)
Q Consensus 318 ~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l-----~ 392 (966)
.+..+..+... ..+..++..+.-.. ....+..+..+|..|+..-. ....+ +
T Consensus 307 ~~e~~~~i~~~--~~i~~Lv~lL~~~~--------------------~~~~~~~a~~aL~~Ls~~~~--~~~~i~~~g~l 362 (780)
T 2z6g_A 307 NQESKLIILAS--GGPQALVNIMRTYT--------------------YEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGM 362 (780)
T ss_dssp CHHHHHHHHTT--THHHHHHHHHTTCC--------------------CHHHHHHHHHHHHHHHTSTT--HHHHHHHTTHH
T ss_pred ChHHHHHHHHc--CCHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHhhcChH--HHHHHHHhchH
Confidence 33333333211 12333333332110 11223455666666664211 11111 2
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHH
Q 046316 393 DAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFA 472 (966)
Q Consensus 393 ~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~ 472 (966)
+.+...+. +. ....++.++.++..++... .. .......+.. +...+. +..+-+|..|+|
T Consensus 363 ~~Ll~lL~---------~~-~~~~~~~a~~~L~~L~~~~----~~---~~~~~~~i~~-Lv~lL~---~~d~~vr~~A~~ 421 (780)
T 2z6g_A 363 QALGLHLT---------DP-SQRLVQNCLWTLRNLSDAA----TK---QEGMEGLLGT-LVQLLG---SDDINVVTCAAG 421 (780)
T ss_dssp HHHGGGTT---------CS-CHHHHHHHHHHHHHHHTTC----TT---CSCCHHHHHH-HHHHTT---CSCHHHHHHHHH
T ss_pred HHHHHHHc---------CC-chHHHHHHHHHHHHHhccc----hh---hhhhhhHHHH-HHHHHc---CCCHHHHHHHHH
Confidence 22222222 11 2456667777777765421 10 0112333332 223344 678899999999
Q ss_pred HHHHhhhhcChhHHH-----HHHHHHHhhhcCCCCC-cEehhHHHHHHhhcccCCCC-CccccH--HHHHHHHHHHHhhc
Q 046316 473 SVARFSSAISDGVLE-----HFLSAAITTIAMDVPP-PVKVGACRALSELLPKANKG-NFQPQM--MGLFSSLADLLHQA 543 (966)
Q Consensus 473 ~l~~f~~~~~~~~~~-----~~l~~~~~~L~~~~~~-~Vr~~A~~al~~~~~~~~~~-~l~p~l--~~il~~L~~ll~~~ 543 (966)
+++.++..-+ +... ..++.++..|....+. .||..|+.+|.+++...... ..+..+ ...+..|..++...
T Consensus 422 aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~ 500 (780)
T 2z6g_A 422 ILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP 500 (780)
T ss_dssp HHHHHTSSCH-HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT
T ss_pred HHHHHHhCCH-HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCC
Confidence 9999976521 1111 2456666666532233 79999999999997542110 011000 12345666777666
Q ss_pred Ch-hhHHHHHHHHHHHHhhcchhhcc-cccchHHHHHHHHhhc--------------------CChhHHHHHHHHHHHHH
Q 046316 544 RD-ETLHLVLETLQAAIKAGFLTASM-EPMISPLILNIWALHV--------------------SDPFISIDAIEVLEAIK 601 (966)
Q Consensus 544 ~~-d~l~~~le~l~~~i~~~~~~~~~-~~~l~p~~l~l~~~~~--------------------~d~~~~~~~~~~l~~l~ 601 (966)
.. +....++.+|..+.........+ ...++|.++++..... +++.++..+.++|..|+
T Consensus 501 ~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La 580 (780)
T 2z6g_A 501 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA 580 (780)
T ss_dssp CCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHh
Confidence 55 56666666666655322211111 1245677777643211 11335566777888887
Q ss_pred cCCCcHHHH-HHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHH-HHhHHHHHHHhccCchHHhhhh
Q 046316 602 CSPGCIHQL-ASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYD-VCFDAVIRIILQSEDHSEMQNA 679 (966)
Q Consensus 602 ~~~~~~~~l-~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~-~~fp~l~~~l~~s~d~~~lq~~ 679 (966)
..+.....+ ...++|.+...+.... ......++..+..+... ++.-..+.+ ...+.|.+++ ++.+.++...+
T Consensus 581 ~~~~~~~~l~~~~~i~~Lv~lL~~~~---~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll-~~~~~~Vr~~A 654 (780)
T 2z6g_A 581 RDIHNRIVIRGLNTIPLFVQLLYSPI---ENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELL-HSRNEGVATYA 654 (780)
T ss_dssp TSHHHHHHHHHTCCHHHHHHGGGCSC---HHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHH
T ss_pred cChhhHHHHHHCCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHH
Confidence 554433333 4667899999988642 24556677777777643 223222221 1467777765 56788899999
Q ss_pred HHHHHHHHhcCc
Q 046316 680 TECLATFISGGR 691 (966)
Q Consensus 680 ~~~l~~~i~~~~ 691 (966)
..+|.++....+
T Consensus 655 ~~aL~~l~~~~~ 666 (780)
T 2z6g_A 655 AAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHcCCh
Confidence 999999887643
No 30
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.54 E-value=0.0012 Score=82.90 Aligned_cols=309 Identities=9% Similarity=0.059 Sum_probs=165.8
Q ss_pred CChhHHHHHHHHHHHhhhhcChh----HHHHHHHHHHhhhcC----CCCCcEehhHHHHHHhhcccCCCCCccccHHHHH
Q 046316 462 QYPFLYARIFASVARFSSAISDG----VLEHFLSAAITTIAM----DVPPPVKVGACRALSELLPKANKGNFQPQMMGLF 533 (966)
Q Consensus 462 ~~~~Lr~Ra~~~l~~f~~~~~~~----~~~~~l~~~~~~L~~----~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il 533 (966)
.+---+-.+||++|-.++.+.++ .+.++++.+++.+.. +....||..+|..+.++.+-.. .-..++++++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~--~~~~~L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK--AHWNFLRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH--HCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh--ccHHHHHHHH
Confidence 56778889999999999987653 444555555554432 1234566678889988876421 0134788888
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHhhcc--hhhcccccchHHHH---HHHHhh--cCChhHHHHHHHHHHHHHcC-CC
Q 046316 534 SSLADLLHQARDETLHLVLETLQAAIKAGF--LTASMEPMISPLIL---NIWALH--VSDPFISIDAIEVLEAIKCS-PG 605 (966)
Q Consensus 534 ~~L~~ll~~~~~d~l~~~le~l~~~i~~~~--~~~~~~~~l~p~~l---~l~~~~--~~d~~~~~~~~~~l~~l~~~-~~ 605 (966)
+.|+..+.+........+..++..++..-. ....-.+++.|++- +.+.+. .-++.-+..+.+++..+.+. |.
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 898888876655566666666666554211 11000011222222 222221 23445556777888887744 43
Q ss_pred --cHHHHHHhhhcchHhhhcCC------CCCC------chhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhcc-
Q 046316 606 --CIHQLASRILPYVGPILNNP------QQQP------DGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQS- 670 (966)
Q Consensus 606 --~~~~l~~~~lP~l~~~l~~~------~~~~------~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s- 670 (966)
....+.++++|.+...++.- .... ...+...+++++.+.+..+.++.+. +..+||.++++....
T Consensus 623 ~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~-~~~i~~~~l~~y~~~s 701 (1023)
T 4hat_C 623 VAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQ-LGHIYYNMLQLYRAVS 701 (1023)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34557777777665444320 0000 1123344566666666666666654 456667666553210
Q ss_pred ---------Cch------------HHhhhhHHHHHHHHhcCcc--ceeeeccCC-cchHHHHHHHHHhhcCCCCCCcccc
Q 046316 671 ---------EDH------------SEMQNATECLATFISGGRQ--LMLVWGGDS-GFTMRSLLDAASRLLNPDLESSGSL 726 (966)
Q Consensus 671 ---------~d~------------~~lq~~~~~l~~~i~~~~~--~~~~~~~~~-~~~l~~il~i~~~lL~~~~~~~~~~ 726 (966)
++. .+..+....+..||.+... .+.. +- ++-++.++.-..+- .|...++
T Consensus 702 ~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~---~~~~~l~~~vl~dY~~~-~~~~r~~--- 774 (1023)
T 4hat_C 702 SMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVK---VLVEPLLNAVLEDYMNN-VPDARDA--- 774 (1023)
T ss_dssp HHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHH---HTHHHHHHHHHHHHHHS-CGGGCCH---
T ss_pred HHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HhHHHHHHHHHHHHHhC-ChhhccH---
Confidence 010 1222333444555555421 0000 00 12233333333321 1222333
Q ss_pred chHHHHHHHHHhCChhhhHhHHHHHHHHHHH----HHH--hhhHHHHHHHHHHHHHHHhh
Q 046316 727 FVGSYILQLILHLPSQMAQHIRDLVAALVRR----LQS--AQIAGLRSSLLLIFARLVHM 780 (966)
Q Consensus 727 ~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~r----L~~--~~~~~~~~~li~vfa~l~~~ 780 (966)
.+-.++.+++.++++.+.+.++.|+++++.. +.. .+.|.++.++.-...++...
T Consensus 775 ~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~ 834 (1023)
T 4hat_C 775 EVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEK 834 (1023)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 4667888889999887788899888887533 222 23377777766655555443
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.53 E-value=8.3e-06 Score=95.95 Aligned_cols=391 Identities=8% Similarity=0.042 Sum_probs=223.1
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHhccCCCCc-----cchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhh
Q 046316 80 LLLSSLDDTHRKICTAISMAVASIAAYDWPEDW-----PDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKL 154 (966)
Q Consensus 80 ~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~W-----P~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i 154 (966)
.|++.|.+++..+|..++.++..++..+-...+ .+++|.|++++.++.++.....|+.+|..++..-.+..-.-+
T Consensus 91 ~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 170 (530)
T 1wa5_B 91 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV 170 (530)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 455666777889999999999999876422223 468999999998744677888999999999874322110111
Q ss_pred hhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhh
Q 046316 155 VPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWG 234 (966)
Q Consensus 155 ~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~ 234 (966)
-...+|.|.+++.+. +..+|..|+.++..+.. .... ....+.. ...++.+..++.. .+..
T Consensus 171 ~~g~i~~Lv~lL~~~---~~~vr~~A~~aL~~l~~-------~~~~-~~~~~~~--~~~l~~L~~ll~~-------~~~~ 230 (530)
T 1wa5_B 171 DADAVPLFIQLLYTG---SVEVKEQAIWALGNVAG-------DSTD-YRDYVLQ--CNAMEPILGLFNS-------NKPS 230 (530)
T ss_dssp HTTCHHHHHHHHHHC---CHHHHHHHHHHHHHHHT-------TCHH-HHHHHHH--TTCHHHHHHGGGS-------CCHH
T ss_pred HCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhC-------CCcc-chHHHHH--cCcHHHHHHHhcc-------CCHH
Confidence 245678888888754 46788877776665442 1111 1111111 1234556666654 2346
Q ss_pred HHHHHHHHHHHHHHhc-chhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHH
Q 046316 235 VKMEVLKCLNQFIQNF-PSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLL 313 (966)
Q Consensus 235 lk~~~~~~L~~l~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~ 313 (966)
++..++.+|..+...- +..-.......++.+.. .+. +++ ..+...++..+.
T Consensus 231 v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~------------lL~----------~~d------~~v~~~a~~~L~ 282 (530)
T 1wa5_B 231 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK------------LIY----------SMD------TETLVDACWAIS 282 (530)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHH------------HTT----------CCC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHH------------HHc----------CCC------HHHHHHHHHHHH
Confidence 8888999999888554 32211111112221111 111 111 467777888888
Q ss_pred HHhcCh-hHHH-HHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhh---H
Q 046316 314 TIVGSA-KLVK-VIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREG---I 388 (966)
Q Consensus 314 ~~~~~~-~~~~-~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~---~ 388 (966)
.+.... .... .+.. .++..++.++.- ....+|..|...|..++...+... +
T Consensus 283 ~L~~~~~~~~~~~~~~---~~v~~Lv~lL~~---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 338 (530)
T 1wa5_B 283 YLSDGPQEAIQAVIDV---RIPKRLVELLSH---------------------ESTLVQTPALRAVGNIVTGNDLQTQVVI 338 (530)
T ss_dssp HHHSSCHHHHHHHHHT---TCHHHHHHGGGC---------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHhc---CcHHHHHHHHCC---------------------CChhhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 877543 2222 2221 234444444421 124567788888887765322111 0
Q ss_pred -HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHH
Q 046316 389 -DAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLY 467 (966)
Q Consensus 389 -~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr 467 (966)
..+++.+.+.+.. ..|..|+.|+.+++.++....+.... .....+ +. .+...++ ++++-+|
T Consensus 339 ~~~~l~~L~~lL~~----------~~~~vr~~A~~aL~~l~~~~~~~~~~-~~~~~~---l~-~L~~lL~---~~~~~v~ 400 (530)
T 1wa5_B 339 NAGVLPALRLLLSS----------PKENIKKEACWTISNITAGNTEQIQA-VIDANL---IP-PLVKLLE---VAEYKTK 400 (530)
T ss_dssp HTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTC---HH-HHHHHHH---HSCHHHH
T ss_pred HcchHHHHHHHHcC----------CCHHHHHHHHHHHHHHHcCCHHHHHH-HHHCCC---HH-HHHHHHh---cCCHHHH
Confidence 1233344444432 25899999999999987421111000 000011 11 1222333 5678999
Q ss_pred HHHHHHHHHhhhhcCh--hHHHH-----HHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCC------CCccccHHHH--
Q 046316 468 ARIFASVARFSSAISD--GVLEH-----FLSAAITTIAMDVPPPVKVGACRALSELLPKANK------GNFQPQMMGL-- 532 (966)
Q Consensus 468 ~Ra~~~l~~f~~~~~~--~~~~~-----~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~------~~l~p~l~~i-- 532 (966)
..|+|+++.++....+ +.... .++.++..|.. .+..||..|+.+|.+++..... ....++...+
T Consensus 401 ~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (530)
T 1wa5_B 401 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 479 (530)
T ss_dssp HHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHH
Confidence 9999999999876443 33332 45566666653 3678999999999999875311 1344554443
Q ss_pred ---HHHHHHHHhhcChhhHHHHHHHHHHHHhh
Q 046316 533 ---FSSLADLLHQARDETLHLVLETLQAAIKA 561 (966)
Q Consensus 533 ---l~~L~~ll~~~~~d~l~~~le~l~~~i~~ 561 (966)
++.|..+......+....+...|...+..
T Consensus 480 ~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 480 AGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp TTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 55666666555556556666666665543
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.52 E-value=7.5e-05 Score=89.28 Aligned_cols=409 Identities=14% Similarity=0.131 Sum_probs=206.4
Q ss_pred HHHHHhcCCCHHHhHHHHHHHHhhccC-c-HHHHHHHHhhhcccccccccc-------CCCCChHHHHHHHHHHHHHhhh
Q 046316 17 NCLSATLDPNQEVRSFAEVSLNQASLQ-P-AAVLLKHFIKKHWQEGEESFE-------LPAVSSEEKEVIRKLLLSSLDD 87 (966)
Q Consensus 17 ~~L~~~ls~d~~~R~~AE~~L~~~~~~-p-A~i~LKn~I~~~W~~~~~~~~-------~~~i~~~~K~~IR~~Ll~~L~~ 87 (966)
+++....|+|-..||-+-..+..+... | -+++.=|.+.+.-....+..+ +.--+++--..+-..+.++|.+
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~ 153 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKT 153 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 333444466666777666666655543 3 233333333332222111100 0001222223344555667788
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc--cchhhhhhhHHHHHHHH
Q 046316 88 THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD--AIVPKLVPVLFPVLHTI 165 (966)
Q Consensus 88 ~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~--~~~~~i~~~l~p~L~~i 165 (966)
+++-||+.++.|+.+|.+.+ |+.=+++++.+..++.+. |+..+.+|+.+|.+++..-.+ +.+..+++.++..|.++
T Consensus 154 ~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~ 231 (618)
T 1w63_A 154 SNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNL 231 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 765567777788888774 888899999999999864221 23444555555555554
Q ss_pred hcCCC--------CCcHHHHHHHHHHHHHHHH-----------HHHhhhc---c--ch--hHHHHhhH---------hhh
Q 046316 166 VSFPE--------SYDRYVRTKALSIVYSCTA-----------MLGVMSG---V--CK--TEMFALMM---------PML 210 (966)
Q Consensus 166 ~~~~~--------~~~~~~r~~al~i~~~~~~-----------~l~~~~~---~--~~--~~~~~~~~---------~~l 210 (966)
..+.. ..++-.+..+++++..... .+..+.. . +. .-+.+.+. ...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~ 311 (618)
T 1w63_A 232 IMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 311 (618)
T ss_dssp HHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH
Confidence 32110 0133344444444332110 0000000 0 00 00000000 001
Q ss_pred HHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCC
Q 046316 211 KPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAG 290 (966)
Q Consensus 211 ~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~ 290 (966)
..-++.+..++..+ +-.+|--++.+|.++....|+.+.++...++. .+
T Consensus 312 ~~a~~~L~~~L~~~-------d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~----------------~l--------- 359 (618)
T 1w63_A 312 VLAINILGRFLLNN-------DKNIRYVALTSLLKTVQTDHNAVQRHRSTIVD----------------CL--------- 359 (618)
T ss_dssp HHHHHHHHHHHTCS-------STTTHHHHHHHHHHHHHHHHHHHGGGHHHHHH----------------GG---------
T ss_pred HHHHHHHHHHHhCC-------CCchHHHHHHHHHHHHhhCHHHHHHHHHHHHH----------------Hc---------
Confidence 11223333334321 12466666777777777666665555443322 11
Q ss_pred CcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhh
Q 046316 291 RYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRV 370 (966)
Q Consensus 291 ~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~ 370 (966)
+|+| ..+...+++.+..++..... ..++..++.|+.- . ....|.
T Consensus 360 -~d~d------~~Ir~~alelL~~l~~~~nv--------~~iv~eL~~~l~~---------~------------d~e~r~ 403 (618)
T 1w63_A 360 -KDLD------VSIKRRAMELSFALVNGNNI--------RGMMKELLYFLDS---------C------------EPEFKA 403 (618)
T ss_dssp -GSSC------HHHHHHHHHHHHHHCCSSST--------HHHHHHHHHHHHH---------C------------CHHHHH
T ss_pred -cCCC------hhHHHHHHHHHHHHcccccH--------HHHHHHHHHHHHh---------C------------CHHHHH
Confidence 1222 46778889988888765433 2244444444320 1 123588
Q ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHH
Q 046316 371 SGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQ 450 (966)
Q Consensus 371 aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~ 450 (966)
.+...+..++.+|+.. ....++.+.+.+.... .+...| ++..+..+ +... + ++......
T Consensus 404 ~~v~~I~~la~k~~~~-~~~~v~~ll~lL~~~~---------~~v~~~-~~~~l~~i---i~~~------p-~l~~~~v~ 462 (618)
T 1w63_A 404 DCASGIFLAAEKYAPS-KRWHIDTIMRVLTTAG---------SYVRDD-AVPNLIQL---ITNS------V-EMHAYTVQ 462 (618)
T ss_dssp HHHHHHHHHHHSSCCC-HHHHHHHHHHHHHHTG---------GGSCSS-HHHHHHHH---HHHS------C-STHHHHHH
T ss_pred HHHHHHHHHHHHhCcc-HHHHHHHHHHHHHhcc---------chhHHH-HHHHHHHH---HhcC------h-hHHHHHHH
Confidence 8999999999998644 3444555555555421 111112 22222222 1111 1 11111111
Q ss_pred HHhhhhcCCCCCChhHHHHHHHHHHHhhhhc-------------ChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhc
Q 046316 451 MITEDIGTGVHQYPFLYARIFASVARFSSAI-------------SDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELL 517 (966)
Q Consensus 451 ~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~-------------~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~ 517 (966)
.+...+.......+..+ .++|++|.|++.+ .+.....++..+++.. ..+..||..+.+|+..+.
T Consensus 463 ~L~~~l~~~~~~~~~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~vr~~~lta~~Kl~ 539 (618)
T 1w63_A 463 RLYKAILGDYSQQPLVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN--MSTSVTRGYALTAIMKLS 539 (618)
T ss_dssp HHHHHHHHCCSCSHHHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST--TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccHHHHH-HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHH
Confidence 12222221113456665 5899999999754 2334445555544432 236689999999997776
Q ss_pred cc
Q 046316 518 PK 519 (966)
Q Consensus 518 ~~ 519 (966)
-.
T Consensus 540 ~~ 541 (618)
T 1w63_A 540 TR 541 (618)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 33
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.51 E-value=0.00088 Score=85.42 Aligned_cols=395 Identities=10% Similarity=0.065 Sum_probs=191.7
Q ss_pred ccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccH
Q 046316 365 TYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRL 444 (966)
Q Consensus 365 ~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~ 444 (966)
.|..|.+|.-.+..+++..++..-..+++.+.+.+...... ..++......+-.+++++|..++.+....+ + +
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~-~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-----~-l 538 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVK-KRGKDNKAVVASDIMYVVGQYPRFLKAHWN-----F-L 538 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTS-SCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-----H-H
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhh-hccccchHHHHHHHHHHHHHHHHHHHhHHH-----H-H
Confidence 35568888888888876555432122233333333221000 000012345666788999999876543211 1 3
Q ss_pred HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChh-----------HHHHHHHHHHhhhcCCCCCcEehhHHHHH
Q 046316 445 GELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDG-----------VLEHFLSAAITTIAMDVPPPVKVGACRAL 513 (966)
Q Consensus 445 ~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~-----------~~~~~l~~~~~~L~~~~~~~Vr~~A~~al 513 (966)
...+.. ++..+. ++++-++.+||+++.+|++..... ++..+++.+...+.. -+..-+.....|+
T Consensus 539 ~~vl~~-ll~~l~---~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~-~~~~~~~~~~eai 613 (1049)
T 3m1i_C 539 RTVILK-LFEFMH---ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-LQPQQVHTFYKAC 613 (1049)
T ss_dssp HHHHHH-HHHHTT---SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-SCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 343432 333444 678999999999999999875432 234444444444331 1111223456666
Q ss_pred HhhcccCC-CCCccccHHHHHHH----HHHHHhhc--------Chh---hHHHHHHHHHHHHhhc-c-hhhcccccchHH
Q 046316 514 SELLPKAN-KGNFQPQMMGLFSS----LADLLHQA--------RDE---TLHLVLETLQAAIKAG-F-LTASMEPMISPL 575 (966)
Q Consensus 514 ~~~~~~~~-~~~l~p~l~~il~~----L~~ll~~~--------~~d---~l~~~le~l~~~i~~~-~-~~~~~~~~l~p~ 575 (966)
..++...+ .+...+++..++.. +-+++.+. +.+ .+..+++++..+++.- . +.+.+. .+.+-
T Consensus 614 ~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~-~i~~~ 692 (1049)
T 3m1i_C 614 GIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYN 692 (1049)
T ss_dssp HHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHH
Confidence 66665433 13345555554443 44444321 112 2345566766665431 1 332221 12222
Q ss_pred HHHHHHhh---------------cCChhH---HH---HHHHHHHHHHcCCCcH----HHHHHhhhcchHhhhcCCCCCCc
Q 046316 576 ILNIWALH---------------VSDPFI---SI---DAIEVLEAIKCSPGCI----HQLASRILPYVGPILNNPQQQPD 630 (966)
Q Consensus 576 ~l~l~~~~---------------~~d~~~---~~---~~~~~l~~l~~~~~~~----~~l~~~~lP~l~~~l~~~~~~~~ 630 (966)
++.+|... ...|.+ +. ....+++.......+. .++++..+..+...+++....
T Consensus 693 ~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~-- 770 (1049)
T 3m1i_C 693 MLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPD-- 770 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGG--
T ss_pred HHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcc--
Confidence 22332210 012211 11 1112222222112222 222222222233333221110
Q ss_pred hhhHHHHHHHHHHhhcCChhHH---HHHHHHHhHHHHHHHhc--cCchHHhhhhHHHHHHHHhcCccceeeeccCCcchH
Q 046316 631 GLVAGSLDLLTMLLKSASTDVV---KAAYDVCFDAVIRIILQ--SEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTM 705 (966)
Q Consensus 631 ~~~~~al~ll~~l~~~~~~~l~---~~~~~~~fp~l~~~l~~--s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l 705 (966)
.-...++++++.++...++.+. +.++..++...+.++.. ++++++.++....+..++.+.+..++.- ....+
T Consensus 771 ~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~---~~~~~ 847 (1049)
T 3m1i_C 771 ARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLEL---PPAAF 847 (1049)
T ss_dssp GCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHS---CHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcC---CHHHH
Confidence 0014578888888875543332 33344444444444432 4578999999999999999988877631 12235
Q ss_pred HHHHHHHHhhc-CCCCCCccccchHHHHHHHHHhCCh----h-----hhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 046316 706 RSLLDAASRLL-NPDLESSGSLFVGSYILQLILHLPS----Q-----MAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFA 775 (966)
Q Consensus 706 ~~il~i~~~lL-~~~~~~~~~~~vg~Lv~~li~~~~~----~-----l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa 775 (966)
..+++.+..-+ .++ -...-.+.+.+..++.+... + ...+...|++.++.-|...-..+-......++.
T Consensus 848 ~~v~~~~~~al~~~~--~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~ 925 (1049)
T 3m1i_C 848 KLFVDAICWAFKHNN--RDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLM 925 (1049)
T ss_dssp HHHHHHHHHHHTCCS--HHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC--chHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHH
Confidence 56666554333 222 12233455666666665431 1 134556667777666665444444444555666
Q ss_pred HHHh
Q 046316 776 RLVH 779 (966)
Q Consensus 776 ~l~~ 779 (966)
+++.
T Consensus 926 ~l~~ 929 (1049)
T 3m1i_C 926 KLIS 929 (1049)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 34
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.47 E-value=0.0065 Score=76.07 Aligned_cols=506 Identities=10% Similarity=0.007 Sum_probs=247.4
Q ss_pred chHHHHHHHHHHHHHHHhccCCC---CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc-cchhhhhhhHHHHHH
Q 046316 88 THRKICTAISMAVASIAAYDWPE---DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD-AIVPKLVPVLFPVLH 163 (966)
Q Consensus 88 ~~~kIr~~~a~~Is~Ia~~D~P~---~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~-~~~~~i~~~l~p~L~ 163 (966)
++..++..+-.|+..-..|--+. + +++++.+++.+++ +.....|+.||.+++..-.. +...+++..+ .+.
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l--~L~ 278 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNIL--NLN 278 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH--hHH
Confidence 45667666666666555421000 1 5788889988854 56788999999998875221 1111121111 233
Q ss_pred HHhcCCC--CCcHHHHHHHHHHHHHHHHHHHhhhccch----hHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHH
Q 046316 164 TIVSFPE--SYDRYVRTKALSIVYSCTAMLGVMSGVCK----TEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKM 237 (966)
Q Consensus 164 ~i~~~~~--~~~~~~r~~al~i~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~ 237 (966)
.++.... ..+........+++..+...+... ...+ .+......+.+...++.++.+...+ +..+-.
T Consensus 279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~-------~deVs~ 350 (980)
T 3ibv_A 279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD-------YDETST 350 (980)
T ss_dssp HHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS-------SHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC-------chhHHH
Confidence 3443321 234556555666766554443333 2111 1222234466777778888887653 123334
Q ss_pred HHHHHHHHHHHhcc---------hhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCC---CccchHHHH
Q 046316 238 EVLKCLNQFIQNFP---------SLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDG---AEKSLDSFV 305 (966)
Q Consensus 238 ~~~~~L~~l~~~f~---------~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g---~~~~~~~l~ 305 (966)
.++..+..+...+. ..+.+++..++..+++ +...... ..++++| +.-.|..++
T Consensus 351 ~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~----------k~~yp~d-----~~~~~~~d~ed~~~F~e~R 415 (980)
T 3ibv_A 351 AVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIK----------KMKYDES-----QEWDDDPDSEEEAEFQEMR 415 (980)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHH----------TTSCCTT-----CCCCCCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH----------HccCCCc-----cccccccchhHHHHHHHHH
Confidence 45555555443321 1222333333332221 1111111 1122211 112233344
Q ss_pred HHHHHHHHHHhc-ChhHHHHHHHhHHHHHHHHH-HhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHh
Q 046316 306 IQLFEFLLTIVG-SAKLVKVIASNVRELVYHTI-AFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYC 383 (966)
Q Consensus 306 ~~~~efl~~~~~-~~~~~~~l~~~l~~li~~li-~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~ 383 (966)
..+-.++..+.. .+. .+.+.+-+.+..++ ..+. . ..-..| ..+.+|.-.|..+++..
T Consensus 416 k~l~~l~d~~~~l~~~---~~l~~~~~~i~~~l~~~l~-~-~~~~~W----------------~~~EaaL~~l~~iaE~i 474 (980)
T 3ibv_A 416 KKLKIFQDTINSIDSS---LFSSYMYSAITSSLSTAAT-L-SPENSW----------------QLIEFALYETYIFGEGL 474 (980)
T ss_dssp HHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHTT-S-CHHHHH----------------HHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHhc-c-cCCCCH----------------HHHHHHHHHHHHHHhhc
Confidence 333322222210 111 11111111222222 2221 1 011224 44667777777777765
Q ss_pred Ch---------hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhh
Q 046316 384 GR---------EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITE 454 (966)
Q Consensus 384 ~~---------~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~ 454 (966)
.. ...+.+++++.+.+++. ..+..+.+.|-+++..+|..++-+..+ +--+.+.|.. +..
T Consensus 475 ~~~~~~~~~~~~~lp~l~~ll~~ll~s~-----i~~~~hp~V~~~~~~~l~rys~~~~~~------~~~l~~~L~~-ll~ 542 (980)
T 3ibv_A 475 RGPDAFFNEVDKSPTVLSQILALVTTSQ-----VCRHPHPLVQLLYMEILVRYASFFDYE------SAAIPALIEY-FVG 542 (980)
T ss_dssp CSGGGTBCSSSCCBCHHHHHHHHHHHSS-----TTTCCCHHHHHHHHHHHHHTGGGGGTC------CTTHHHHHHH-HTS
T ss_pred cccccccCcccchhHHHHHHHHHHHhCC-----CCCCCCHHHHHHHHHHHHHHHHHHhcC------chhHHHHHHH-Hhc
Confidence 42 23456777777766531 112346899999999999988765321 1125554543 333
Q ss_pred --hhcCCCCCChhHHHHHHHHHHHhhhhcCh---hHHHHHHHHHHhhhcCCCCC---c-----------------EehhH
Q 046316 455 --DIGTGVHQYPFLYARIFASVARFSSAISD---GVLEHFLSAAITTIAMDVPP---P-----------------VKVGA 509 (966)
Q Consensus 455 --~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~---~~~~~~l~~~~~~L~~~~~~---~-----------------Vr~~A 509 (966)
.+. ++++-+|.||+.++.+|++...+ +....+++.+-..|.-.... . -+..-
T Consensus 543 ~~gl~---~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L 619 (980)
T 3ibv_A 543 PRGIH---NTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYL 619 (980)
T ss_dssp TTTTT---CCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHH
T ss_pred ccccc---CCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHH
Confidence 333 67789999999999999987543 34455555554444311110 0 13445
Q ss_pred HHHHHhhcccCC--C----CCccccHHHHHHHHHHHHhhcCh--h---hHHHHHHHHHHHHhhc---c-h-h--hccccc
Q 046316 510 CRALSELLPKAN--K----GNFQPQMMGLFSSLADLLHQARD--E---TLHLVLETLQAAIKAG---F-L-T--ASMEPM 571 (966)
Q Consensus 510 ~~al~~~~~~~~--~----~~l~p~l~~il~~L~~ll~~~~~--d---~l~~~le~l~~~i~~~---~-~-~--~~~~~~ 571 (966)
..|+..++.... . ..+...+.++++.+-++++.... + ..+..+-++..+.+.- + . . .....+
T Consensus 620 ~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~ 699 (980)
T 3ibv_A 620 FETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNK 699 (980)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHH
Confidence 666666664421 1 23444455666666666654432 2 2222232323222211 1 0 0 011123
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChh
Q 046316 572 ISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTD 650 (966)
Q Consensus 572 l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~ 650 (966)
.++.++.+..+..++..+|..+..+|..+... +....++.+.++..+...++ ...+...|.+++.++...+..
T Consensus 700 ~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~------~~e~~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 700 ASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSID------MNELVDVLSFISQLIHIYKDN 773 (980)
T ss_dssp HHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCC------TTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHHHHH
Confidence 44556666566678888999888888887743 33333344444443332222 123566788888888666544
Q ss_pred HHHHHHHHHhHHHHH
Q 046316 651 VVKAAYDVCFDAVIR 665 (966)
Q Consensus 651 l~~~~~~~~fp~l~~ 665 (966)
+.+. +..+|++++.
T Consensus 774 ~~~~-l~~ll~~l~~ 787 (980)
T 3ibv_A 774 MMEI-TNRMLPTLLM 787 (980)
T ss_dssp SHHH-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHH
Confidence 4442 3444554443
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.44 E-value=2.1e-06 Score=101.11 Aligned_cols=263 Identities=10% Similarity=0.074 Sum_probs=171.8
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCcccc-HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh--h--HHH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVR-LGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD--G--VLE 487 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~-~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~--~--~~~ 487 (966)
++..++.|+.+++.++..-.+.... ...-. +.. |.. .++ ++++-+|..|+|+++.++..-+. . ...
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~-~~~~g~i~~-Lv~----lL~---~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~ 214 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKV-VVDADAVPL-FIQ----LLY---TGSVEVKEQAIWALGNVAGDSTDYRDYVLQC 214 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTCHHH-HHH----HHH---HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHH-HHHCCCHHH-HHH----HHc---CCCHHHHHHHHHHHHHHhCCCccchHHHHHc
Confidence 5788999999999887521111100 00001 222 222 233 56789999999999999865321 1 112
Q ss_pred HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc--hh
Q 046316 488 HFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF--LT 565 (966)
Q Consensus 488 ~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~--~~ 565 (966)
..++.++..|.+ .+..||..|+.+|.+++....+..-......++..|..++...+.+....++.+|..+....+ ..
T Consensus 215 ~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~ 293 (530)
T 1wa5_B 215 NAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ 293 (530)
T ss_dssp TCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 356777777764 466789999999999997642222233445667788888887777788888888887765432 11
Q ss_pred hcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHH-HHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHH
Q 046316 566 ASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQ-LASRILPYVGPILNNPQQQPDGLVAGSLDLLTML 643 (966)
Q Consensus 566 ~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~-l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l 643 (966)
.-....++|.++++. + ..++.++..+..++..++.. +..... +...++|.+...+..+ .......|+..++.+
T Consensus 294 ~~~~~~~v~~Lv~lL-~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 294 AVIDVRIPKRLVELL-S-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP---KENIKKEACWTISNI 368 (530)
T ss_dssp HHHHTTCHHHHHHGG-G-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHH-C-CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC---CHHHHHHHHHHHHHH
Confidence 112235668887773 2 45677888888888888743 322222 3347889999988865 245677889999998
Q ss_pred hhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 644 LKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 644 ~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
..+.+......+-..++|.|++++. +.+..+...++.+|.++...+.
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~ 415 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLE-VAEYKTKKEACWAISNASSGGL 415 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCC
Confidence 8765432222211346888898875 5678899999999999998754
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.43 E-value=0.00064 Score=81.77 Aligned_cols=474 Identities=11% Similarity=0.069 Sum_probs=254.8
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHhccCCC----CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc-cchhh
Q 046316 79 KLLLSSLDDTHRKICTAISMAVASIAAYDWPE----DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD-AIVPK 153 (966)
Q Consensus 79 ~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~----~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~-~~~~~ 153 (966)
..|+..|.+++..+|..++.++..++..+-.. .=++.++.|++.|.+..++.....|..+|..++.+-.. ..+.
T Consensus 17 ~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~- 95 (644)
T 2z6h_A 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF- 95 (644)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH-
Confidence 44666777888999999999999999765211 12468999999998754777888899999887764221 1111
Q ss_pred hhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChh
Q 046316 154 LVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDW 233 (966)
Q Consensus 154 i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~ 233 (966)
-...+|.|.+++.+. +..+|..|+.++..+... .......+.. ...++.++.+|+.+ ..
T Consensus 96 -~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nL~~~-------~~~~~~~v~~---~g~i~~Lv~lL~~~-------~~ 154 (644)
T 2z6h_A 96 -KSGGIPALVKMLGSP---VDSVLFYAITTLHNLLLH-------QEGAKMAVRL---AGGLQKMVALLNKT-------NV 154 (644)
T ss_dssp -TTTHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHH-------STTHHHHHHH---TTHHHHHHHGGGCC-------CH
T ss_pred -HcCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhC-------cchhHHHHHH---CCChHHHHHHHCcC-------CH
Confidence 125788888988765 367777777777665532 0111111111 23456677777752 24
Q ss_pred hHHHHHHHHHHHHHHhcchhhHHhhH-HHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHH
Q 046316 234 GVKMEVLKCLNQFIQNFPSLAESEFL-VVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFL 312 (966)
Q Consensus 234 ~lk~~~~~~L~~l~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl 312 (966)
.++..+..+|..+....++.-..... ..++.+.+.+ .. .+ .+.....+...+
T Consensus 155 ~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL------------~~--------~~-------~~~~~~~a~~~L 207 (644)
T 2z6h_A 155 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM------------RT--------YT-------YEKLLWTTSRVL 207 (644)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH------------TT--------CC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHH------------Hc--------CC-------hHHHHHHHHHHH
Confidence 67777778888777533321000000 1112111111 10 00 145666677777
Q ss_pred HHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhCh-hhHHHH
Q 046316 313 LTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGR-EGIDAI 391 (966)
Q Consensus 313 ~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~-~~~~~l 391 (966)
.++...+..+..+... ..+..++.++.-+ ...+|..|...|..|+...++ .....+
T Consensus 208 ~nLs~~~~~~~~l~~~--g~l~~L~~ll~~~---------------------~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 264 (644)
T 2z6h_A 208 KVLSVCSSNKPAIVEA--GGMQALGLHLTDP---------------------SQRLVQNCLWTLRNLSDAATKQEGMEGL 264 (644)
T ss_dssp HHHTTCTTHHHHHHHT--THHHHHHTTTTCS---------------------CHHHHHHHHHHHHHHGGGCTTCCSCHHH
T ss_pred HHHhcCcccHHHHHHC--CCHHHHHHHHhcC---------------------CHHHHHHHHHHHHHHhhcchhhhhhhhH
Confidence 7776665555443221 1344444444211 133466777788888765432 122344
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHH
Q 046316 392 IDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIF 471 (966)
Q Consensus 392 ~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~ 471 (966)
++.+.+.+.. .++..++.+..+++.++..-.+.... ......-+.+...+ .. .+.++-++..|+
T Consensus 265 i~~Lv~lL~~----------~d~~v~~~a~~aL~~L~~~~~~~~~~-v~~~g~v~~Lv~lL----~~-~~~~~~v~~~a~ 328 (644)
T 2z6h_A 265 LGTLVQLLGS----------DDINVVTCAAGILSNLTCNNYKNKMM-VCQVGGIEALVRTV----LR-AGDREDITEPAI 328 (644)
T ss_dssp HHHHHHHTTC----------SCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHH----HH-HTTCHHHHHHHH
T ss_pred HHHHHHHHcC----------CCHHHHHHHHHHHHHHHcCCHHHHHH-HHHcCCHHHHHHHH----Hc-cCCcHHHHHHHH
Confidence 5555555542 24788999999998886521111100 00001111122222 20 123478999999
Q ss_pred HHHHHhhhhcCh-hHH------HHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH-HHHHHHHHHHHhhc
Q 046316 472 ASVARFSSAISD-GVL------EHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM-MGLFSSLADLLHQA 543 (966)
Q Consensus 472 ~~l~~f~~~~~~-~~~------~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~ 543 (966)
++++.++...+. +.. ...++.+++.|.++.+..||..|+.+|.++..... ..+..+ ..++..|..++...
T Consensus 329 ~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~--~~~~i~~~~~i~~Lv~lL~~~ 406 (644)
T 2z6h_A 329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--NHAPLREQGAIPRLVQLLVRA 406 (644)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG--GHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH--HHHHHHHcCCHHHHHHHHhcc
Confidence 999999764321 111 13567777887755445899999999999986421 001110 12344455555432
Q ss_pred C----------------------hhhHHHHHHHHHHHHhhcchhhcc-cccchHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 046316 544 R----------------------DETLHLVLETLQAAIKAGFLTASM-EPMISPLILNIWALHVSDPFISIDAIEVLEAI 600 (966)
Q Consensus 544 ~----------------------~d~l~~~le~l~~~i~~~~~~~~~-~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l 600 (966)
+ ++.+..++.+|............+ ....+|.++++. ...++.++..+..+|..+
T Consensus 407 ~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL--~~~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 407 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL--YSPIENIQRVAAGVLCEL 484 (644)
T ss_dssp HHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHT--TCSCHHHHHHHHHHHHHH
T ss_pred chhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHH--cCCCHHHHHHHHHHHHHH
Confidence 1 233344555555433221111111 124567777773 235566777777788777
Q ss_pred HcCCCcHHHHH-HhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcC
Q 046316 601 KCSPGCIHQLA-SRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSA 647 (966)
Q Consensus 601 ~~~~~~~~~l~-~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~ 647 (966)
...++....+. ...++.+...+..+. ......|...|..+....
T Consensus 485 ~~~~~~~~~i~~~g~l~~L~~ll~~~~---~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 485 AQDKEAAEAIEAEGATAPLTELLHSRN---EGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HTSHHHHHHHHHTTCHHHHHHHTTCSC---HHHHHHHHHHHHHHTTTS
T ss_pred HcCHHHHHHHHHcCChhHHHHHHcCCC---HHHHHHHHHHHHHHhccC
Confidence 75433222222 234555555554331 234455555555555544
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.42 E-value=9.1e-06 Score=95.54 Aligned_cols=302 Identities=11% Similarity=0.116 Sum_probs=189.4
Q ss_pred chhhHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCcc
Q 046316 367 SCRVSGALLLEEVVSYCGREGI-----DAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTS 441 (966)
Q Consensus 367 s~R~aa~~lL~~L~~~~~~~~~-----~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~ 441 (966)
..|..|...|..+....+.... ..+++.+.+.+.. .+.+..++.|+.+++.++..-.+.... ...
T Consensus 89 ~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~---------~~~~~v~~~A~~~L~~l~~~~~~~~~~-~~~ 158 (528)
T 4b8j_A 89 NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR---------EDFPQLQFEAAWALTNIASGTSENTKV-VID 158 (528)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC---------TTCHHHHHHHHHHHHHHHTSCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC---------CCCHHHHHHHHHHHHHHhCCCHHHHHH-HHh
Confidence 3466777777777554331111 1233344444432 223788999999999987631111110 000
Q ss_pred ccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcCh--hHHH--HHHHHHHhhhcCCCCCcEehhHHHHHHhhc
Q 046316 442 VRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISD--GVLE--HFLSAAITTIAMDVPPPVKVGACRALSELL 517 (966)
Q Consensus 442 ~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~--~~~~--~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~ 517 (966)
... +. .+...+. ++++-+|..|+|+++.++..-+. .... ..++.++..|..+.+..++..|+.+|.+++
T Consensus 159 ~g~---i~-~L~~lL~---~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 159 HGA---VP-IFVKLLG---SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp TTH---HH-HHHHHTT---CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCc---HH-HHHHHhc---CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 011 21 1223344 67899999999999999865321 1111 256677778754557789999999999999
Q ss_pred ccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hh-hcccccchHHHHHHHHhhcCChhHHHHHHH
Q 046316 518 PKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LT-ASMEPMISPLILNIWALHVSDPFISIDAIE 595 (966)
Q Consensus 518 ~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~-~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~ 595 (966)
...+ ..-......++..|..++...+.+....++.+|..+..... .. .-....++|.++++. + ..++.++..+..
T Consensus 232 ~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~-~~~~~v~~~a~~ 308 (528)
T 4b8j_A 232 RGKP-QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-L-HPSPSVLIPALR 308 (528)
T ss_dssp CSSS-CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-T-CSCHHHHHHHHH
T ss_pred cCCC-CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-c-CCChhHHHHHHH
Confidence 7642 22223445677888888887777888888888887764432 11 112234668888773 2 345678888888
Q ss_pred HHHHHHcC-CCcHHH-HHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCch
Q 046316 596 VLEAIKCS-PGCIHQ-LASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDH 673 (966)
Q Consensus 596 ~l~~l~~~-~~~~~~-l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~ 673 (966)
+|..++.. +..... +...++|.+...+..+. .......|+-.++.+..+.+......+-..++|.|+.++. +.+.
T Consensus 309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~ 385 (528)
T 4b8j_A 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL--KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ-TAEF 385 (528)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH-HSCH
T ss_pred HHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC--cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh-cCCH
Confidence 88888753 322222 23567899999998541 2356678888899888754322222222356789999885 4578
Q ss_pred HHhhhhHHHHHHHHhcCc
Q 046316 674 SEMQNATECLATFISGGR 691 (966)
Q Consensus 674 ~~lq~~~~~l~~~i~~~~ 691 (966)
.+...+..+|.++...+.
T Consensus 386 ~v~~~a~~aL~nl~~~~~ 403 (528)
T 4b8j_A 386 DIKKEAAWAISNATSGGS 403 (528)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 899999999999998754
No 38
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.39 E-value=0.011 Score=71.26 Aligned_cols=622 Identities=10% Similarity=0.001 Sum_probs=310.0
Q ss_pred hHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhh-hHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 046316 115 LLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVP-VLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGV 193 (966)
Q Consensus 115 Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~-~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~ 193 (966)
-+..+.+++.+..|+..+.+|+++|.++|+.-.+... .+.. --.|.+.+++.+.+ .+.-..+..++..+++.+..
T Consensus 50 ~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 125 (810)
T 3now_A 50 CIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTK-GVLTELGVPWFMRVLDQKH---ENCVSTAQFCLQTILNALSG 125 (810)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH-HHHHHSCHHHHHHHHHCCS---TTHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHH-HHHHHcCHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHhc
Confidence 4567777777645788999999999999986432111 1222 23677888887754 23334567777777777765
Q ss_pred hhcc-c-hhHHHHhhH---hhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHH
Q 046316 194 MSGV-C-KTEMFALMM---PMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQT 268 (966)
Q Consensus 194 ~~~~-~-~~~~~~~~~---~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~ 268 (966)
+... + +.+ +..+. .-+...+..+...+.... -.-.-|-.++..+.+-+ |..-......++. -+-
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~--~~g 194 (810)
T 3now_A 126 LKNKPDSKPD-KELCTRNNREIDTLLTCLVYSITDRT-----ISGAARDGVIELITRNV---HYTALEWAERLVE--IRG 194 (810)
T ss_dssp CCSSTTCCCC-HHHHHHTHHHHHHHHHHHHHHHTCTT-----SCHHHHHHHHHHHHHHT---TCTTTTHHHHHHH--TTH
T ss_pred cccccccCCc-HHHHhhhhhHHHHHHHHHHHHhhccc-----cChhhHHHHHHHHHHhC---Cccccccccchhh--Hhh
Confidence 4421 1 111 12222 244555566666665421 11235566666555544 3210000001111 012
Q ss_pred HHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHH
Q 046316 269 FVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIH 348 (966)
Q Consensus 269 ~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e 348 (966)
+..++.+- ..+. +..|++. .+++ ++...++--.++.+.+.-.+.+ .-|
T Consensus 195 ~~~~l~v~--~~~~------~~~~~~~-~~~~-~~~r~~~~~~l~~~~~~~~~~~----------------------~~~ 242 (810)
T 3now_A 195 LCRLLDVC--SELE------DYKYESA-MDIT-GSSSTIASVCLARIYENMYYDE----------------------AKA 242 (810)
T ss_dssp HHHHHHHH--TCCS------SSCCSSC-CCCC-TTHHHHHHHHHHHHHHTCCSHH----------------------HHH
T ss_pred HHHHHHHH--hcCc------ccccccc-CCCC-hhHHHHHHHHHHHHHHHhccch----------------------hHH
Confidence 22222222 1111 1112211 2222 3344444333333322111110 012
Q ss_pred HHhhCHHHHhhcccC--C-ccchhhHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046316 349 IWSIDANQFLADEDE--S-TYSCRVSGALLLEEVVSYCGREGI-----DAIIDAASKRFNESQQEKAAGSTVWWRMREAT 420 (966)
Q Consensus 349 ~w~~Dp~~fv~de~d--~-~~s~R~aa~~lL~~L~~~~~~~~~-----~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaa 420 (966)
.|.+-..+||..--+ + ...+ -|...+..+..--.+.+. ...++.+..++++ . +-..++.|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~--~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s---------~-~~~~q~~A 310 (810)
T 3now_A 243 RFTDQIDEYIKDKLLAPDMESKV--RVTVAITALLNGPLDVGNQVVAREGILQMILAMATT---------D-DELQQRVA 310 (810)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHH--HHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS---------S-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHhHH--HHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC---------C-CHHHHHHH
Confidence 222222333321000 0 0112 223333333221111100 1122333333332 1 34678899
Q ss_pred HHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhh---------cChhHHHHHHH
Q 046316 421 LFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSA---------ISDGVLEHFLS 491 (966)
Q Consensus 421 L~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~---------~~~~~~~~~l~ 491 (966)
+.+++.++.. .++.+ . + .+... ..+...++ +..+.+|.+|.|.+.+.... +.......+.+
T Consensus 311 ~~al~~aa~~-~~~R~-~---I-~~~gv-~~L~~Ll~---s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~ 380 (810)
T 3now_A 311 CECLIAASSK-KDKAK-A---L-CEQGV-DILKRLYH---SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAE 380 (810)
T ss_dssp HHHHHHHTTS-HHHHH-T---T-HHHHH-HHHHHHTT---CSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHH
T ss_pred HHHHHHHcCC-cHHHH-H---H-HHcCc-HHHHHHHc---CCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHH
Confidence 9999988764 22221 0 1 11112 22323333 56689999999999999742 11133567777
Q ss_pred HHHhhhcCC-CCCcEehhHHHHHHhhcccC-CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-h----
Q 046316 492 AAITTIAMD-VPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-L---- 564 (966)
Q Consensus 492 ~~~~~L~~~-~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~---- 564 (966)
.+++.|.++ .+.-+|..|+.+|.++.... .+..+.- -...+..|..++...+......++.+|..+..... .
T Consensus 381 ~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~-d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~ 459 (810)
T 3now_A 381 ACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIE-DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLP 459 (810)
T ss_dssp HHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHH-ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhH
Confidence 788888754 26779999999999987652 1111111 03456677777776555677778888877764210 0
Q ss_pred ------------------------h-----hcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHH-HHhh
Q 046316 565 ------------------------T-----ASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQL-ASRI 614 (966)
Q Consensus 565 ------------------------~-----~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l-~~~~ 614 (966)
. .-...-.+|.++++ .+ ..++.++..+..+|..|+..+++-..+ ..-.
T Consensus 460 ~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L-L~-s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Ga 537 (810)
T 3now_A 460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL-AK-TESHNSQELIARVLNAVCGLKELRGKVVQEGG 537 (810)
T ss_dssp SCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH-HT-CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred HHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH-Hc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 0 00112345777777 33 357788888999999998655443333 3457
Q ss_pred hcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHH--HHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCcc
Q 046316 615 LPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVV--KAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQ 692 (966)
Q Consensus 615 lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~--~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~ 692 (966)
+|.+...+.+.. ......|...|+.+.....+... ......+.|+|++++....+......++.+|.|+...+.+
T Consensus 538 ip~Lv~LL~s~~---~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~ 614 (810)
T 3now_A 538 VKALLRMALEGT---EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614 (810)
T ss_dssp HHHHHHHHHSSC---HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHccCC---HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence 899999987542 24457788888888776543321 1011236899999875322222234688899998876321
Q ss_pred ---ceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChh-hhHhH--HHHHHHHHHHHHHhhhHHH
Q 046316 693 ---LMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQ-MAQHI--RDLVAALVRRLQSAQIAGL 766 (966)
Q Consensus 693 ---~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~-l~~~l--~~iL~a~~~rL~~~~~~~~ 766 (966)
.+.. ..++..+...+. +++ ......+.+++..+.. +.. ...++ .+.+..++.-+ ......+
T Consensus 615 ~~~~Ii~-----aG~l~~Lv~LL~---s~~--~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL-~s~d~~v 681 (810)
T 3now_A 615 VRQRIIK-----EQGVSKIEYYLM---EDH--LYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLC-EDEDEET 681 (810)
T ss_dssp HHHHHHH-----TTHHHHHHHHHH---SCC--TTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGG-GCSSHHH
T ss_pred HHHHHHH-----cCCHHHHHHHHc---CCC--HHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHh-cCCCHHH
Confidence 1111 123333333322 322 1122223333333321 111 12222 12344444333 3344566
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHHHccC
Q 046316 767 RSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTR 838 (966)
Q Consensus 767 ~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~~~ 838 (966)
+......++++... ++...-.++.. ..++..++..- . -....-++..+.|++.+...+
T Consensus 682 q~~Aa~ALanLt~~---s~~~~~~ii~~------~g~I~~Lv~LL-~----s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 682 ATACAGALAIITSV---SVKCCEKILAI------ASWLDILHTLI-A----NPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp HHHHHHHHHHHHHH---CHHHHHHHHTS------TTHHHHHHHHH-T----CSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHH------cCCHHHHHHHH-C----CCCHHHHHHHHHHHHHHHhCC
Confidence 66677788887764 44443334421 23444444322 2 134455777888888888754
No 39
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.38 E-value=0.00021 Score=87.89 Aligned_cols=471 Identities=10% Similarity=0.070 Sum_probs=248.9
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhccCCC----CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc-cchhhhh
Q 046316 81 LLSSLDDTHRKICTAISMAVASIAAYDWPE----DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD-AIVPKLV 155 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~----~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~-~~~~~i~ 155 (966)
|+.+|.+.+..+|..++.++..|+..+-.. .=++.++.|++.|.+..++.....|..+|..+..+-.. ..+. -
T Consensus 155 Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~--~ 232 (780)
T 2z6g_A 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF--K 232 (780)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH--H
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH--H
Confidence 444556778999999999999999754211 12578999999998644778888999999988764211 1122 1
Q ss_pred hhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhH
Q 046316 156 PVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGV 235 (966)
Q Consensus 156 ~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~l 235 (966)
...+|.|..++.+. +..+|..|+.++..+... +. .....+.. ..-++.++.++.. .++++
T Consensus 233 ~g~I~~Lv~lL~~~---~~~v~~~A~~aL~nLa~~-------~~-~~~~~v~~--~g~v~~Lv~lL~~-------~~~~v 292 (780)
T 2z6g_A 233 SGGIPALVNMLGSP---VDSVLFHAITTLHNLLLH-------QE-GAKMAVRL--AGGLQKMVALLNK-------TNVKF 292 (780)
T ss_dssp TTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHH-------ST-THHHHHHH--TTHHHHHHHGGGC-------CCHHH
T ss_pred cCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCC-------Ch-hhHHHHHH--cCCHHHHHHHHhc-------CCHHH
Confidence 35788999999765 367777777766655432 11 11111110 1234566777764 23567
Q ss_pred HHHHHHHHHHHHHhcchhhHHhhH-HHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHH
Q 046316 236 KMEVLKCLNQFIQNFPSLAESEFL-VVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLT 314 (966)
Q Consensus 236 k~~~~~~L~~l~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~ 314 (966)
+..+..+|..+....+..-..... ..+..+.+. +... + .+.....+...+..
T Consensus 293 ~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~l------------L~~~--------~-------~~~~~~~a~~aL~~ 345 (780)
T 2z6g_A 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNI------------MRTY--------T-------YEKLLWTTSRVLKV 345 (780)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH------------HTTC--------C-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH------------HhcC--------C-------HHHHHHHHHHHHHH
Confidence 777778887665322211000000 111111111 1100 0 02333344445555
Q ss_pred HhcChhHHHHH-HHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChh-hHHHHH
Q 046316 315 IVGSAKLVKVI-ASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGRE-GIDAII 392 (966)
Q Consensus 315 ~~~~~~~~~~l-~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~-~~~~l~ 392 (966)
+...+..+..+ ... .+..++.++.-. ...++..|...|..|+....+. ....++
T Consensus 346 Ls~~~~~~~~i~~~g---~l~~Ll~lL~~~---------------------~~~~~~~a~~~L~~L~~~~~~~~~~~~~i 401 (780)
T 2z6g_A 346 LSVCSSNKPAIVEAG---GMQALGLHLTDP---------------------SQRLVQNCLWTLRNLSDAATKQEGMEGLL 401 (780)
T ss_dssp HHTSTTHHHHHHHTT---HHHHHGGGTTCS---------------------CHHHHHHHHHHHHHHHTTCTTCSCCHHHH
T ss_pred hhcChHHHHHHHHhc---hHHHHHHHHcCC---------------------chHHHHHHHHHHHHHhccchhhhhhhhHH
Confidence 44444333332 222 334444443211 1123556677777777654321 234455
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCcccc-HHHHHHHHHhhhhcCCCCCChhHHHHHH
Q 046316 393 DAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVR-LGELLEQMITEDIGTGVHQYPFLYARIF 471 (966)
Q Consensus 393 ~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~-~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~ 471 (966)
+.+.+.+.. .+|..|+.+..+++.++..-.+.... ..... +.. +.+.+.. .+...-+|..|+
T Consensus 402 ~~Lv~lL~~----------~d~~vr~~A~~aL~~L~~~~~~~~~~-i~~~g~i~~-Lv~lL~~-----~~~~~~v~~~Al 464 (780)
T 2z6g_A 402 GTLVQLLGS----------DDINVVTCAAGILSNLTCNNYKNKMM-VCQVGGIEA-LVRTVLR-----AGDREDITEPAI 464 (780)
T ss_dssp HHHHHHTTC----------SCHHHHHHHHHHHHHHTSSCHHHHHH-HHTTTHHHH-HHHHHHH-----HTTCHHHHHHHH
T ss_pred HHHHHHHcC----------CCHHHHHHHHHHHHHHHhCCHHHHHH-HHHCCCHHH-HHHHHHc-----cCCHHHHHHHHH
Confidence 555555532 35889999999999886521111100 00011 222 2222211 022347999999
Q ss_pred HHHHHhhhhcCh-hHH------HHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC-CCCCccccHHHHHHHHHHHHhhc
Q 046316 472 ASVARFSSAISD-GVL------EHFLSAAITTIAMDVPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFSSLADLLHQA 543 (966)
Q Consensus 472 ~~l~~f~~~~~~-~~~------~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~ 543 (966)
|+++.++...+. +.. ...++.+++.|..+....||..||.+|.++.... .+..+.. ..++..|..++...
T Consensus 465 ~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~ 542 (780)
T 2z6g_A 465 CALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE--QGAIPRLVQLLVRA 542 (780)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHH--TTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHH--CCCHHHHHHHHHhc
Confidence 999999764322 111 1236677777765533489999999999998541 1100100 12334444444332
Q ss_pred C----------------------hhhHHHHHHHHHHHHhhcchhhcc-cccchHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 046316 544 R----------------------DETLHLVLETLQAAIKAGFLTASM-EPMISPLILNIWALHVSDPFISIDAIEVLEAI 600 (966)
Q Consensus 544 ~----------------------~d~l~~~le~l~~~i~~~~~~~~~-~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l 600 (966)
+ +++...++.+|............+ ....+|.++++ . ...++.++..+..+|..+
T Consensus 543 ~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~l-L-~~~~~~v~~~a~~aL~~L 620 (780)
T 2z6g_A 543 HQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQL-L-YSPIENIQRVAAGVLCEL 620 (780)
T ss_dssp HHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHG-G-GCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHH-H-cCCCHHHHHHHHHHHHHH
Confidence 1 233444555555443211111111 12456777776 2 235677777788888887
Q ss_pred HcCCCcHHHHHH-hhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCC
Q 046316 601 KCSPGCIHQLAS-RILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAS 648 (966)
Q Consensus 601 ~~~~~~~~~l~~-~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~ 648 (966)
...+.....+.+ ..++.|...+..+. ......|+..|..+....+
T Consensus 621 ~~~~~~~~~i~~~g~i~~L~~Ll~~~~---~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 621 AQDKEAAEAIEAEGATAPLTELLHSRN---EGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HTSHHHHHHHHHTTCHHHHHHGGGCSC---HHHHHHHHHHHHHHHTTSC
T ss_pred hcCHHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCh
Confidence 754333222222 35677777666432 2455666666777666554
No 40
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.37 E-value=0.00061 Score=81.34 Aligned_cols=485 Identities=12% Similarity=0.065 Sum_probs=251.8
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHH----HHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhh
Q 046316 82 LSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLP----FLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPV 157 (966)
Q Consensus 82 l~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~----~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~ 157 (966)
++.+.+++..+|+..-..+...+.. -|+++- .+.+-++++ |+..+..|+++|..+.. ..+++.
T Consensus 76 ik~~~s~~~~~Krl~Yl~~~~~~~~-----~~e~~~l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~-------~~~~~~ 142 (618)
T 1w63_A 76 LKLIASQKFTDKRIGYLGAMLLLDE-----RQDVHLLMTNCIKNDLNHS-TQFVQGLALCTLGCMGS-------SEMCRD 142 (618)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHSCS-SSHHHHHHHHHHHHHCC-------HHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhcCCC-CHhHHHHHHHHHHhcCC-------HHHHHH
Confidence 3455677777887777777776643 366544 445555564 77788889999988863 235678
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHH
Q 046316 158 LFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKM 237 (966)
Q Consensus 158 l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~ 237 (966)
++|.+.+.+.+. ++.+|+.|+.....+... ++ +.+..|++.+..+|.. .+..++.
T Consensus 143 l~~~l~~~L~~~---~~~VRk~A~~al~~l~~~-------~p--------~~v~~~~~~l~~lL~D-------~d~~V~~ 197 (618)
T 1w63_A 143 LAGEVEKLLKTS---NSYLRKKAALCAVHVIRK-------VP--------ELMEMFLPATKNLLNE-------KNHGVLH 197 (618)
T ss_dssp HHHHHHHHHHSC---CHHHHHHHHHHHHHHHHH-------CG--------GGGGGGGGGTTTSTTC-------CCHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHHHHHH-------Ch--------HHHHHHHHHHHHHhCC-------CCHhHHH
Confidence 888999988765 478998887766554432 11 1222444444444432 3356888
Q ss_pred HHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhc
Q 046316 238 EVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVG 317 (966)
Q Consensus 238 ~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~ 317 (966)
.++..|..+....|+. ..++..+++.+++.+..+.. ... ...|+-.|. .-+-....+++++.....
T Consensus 198 ~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~-------~~~----~~~~~~~~~--~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 198 TSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIM-------SGY----SPEHDVSGI--SDPFLQVRILRLLRILGR 263 (618)
T ss_dssp HHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHH-------SCC----CTTTCSSSS--SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHc-------CCC----CccccccCC--CCChHHHHHHHHHHHhCC
Confidence 8888888887554432 11222333334444332110 000 011111111 013455678888887764
Q ss_pred C-hhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHH
Q 046316 318 S-AKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAAS 396 (966)
Q Consensus 318 ~-~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~ 396 (966)
. +... ..+.+++..+++..... .+ ...++.-.|..++..+.. .........+.+.
T Consensus 264 ~~~~~~----~~~~~~L~~l~~~~~~~--------~~----------~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~ 319 (618)
T 1w63_A 264 NDDDSS----EAMNDILAQVATNTETS--------KN----------VGNAILYETVLTIMDIKS--ESGLRVLAINILG 319 (618)
T ss_dssp TCHHHH----HTTHHHHHHHHHTSCCS--------ST----------HHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHH
T ss_pred CCHHHH----HHHHHHHHHHHhccccc--------cc----------hHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Confidence 3 2221 22222333333211000 00 113344445454443311 0111112223333
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHH
Q 046316 397 KRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVAR 476 (966)
Q Consensus 397 ~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~ 476 (966)
..+.+ .+...|.++|.+++.++..-.+ -+..... .+.+.+. ++.+.+|.+|+.++.+
T Consensus 320 ~~L~~----------~d~~vr~~aL~~L~~i~~~~p~---------~~~~~~~-~i~~~l~---d~d~~Ir~~alelL~~ 376 (618)
T 1w63_A 320 RFLLN----------NDKNIRYVALTSLLKTVQTDHN---------AVQRHRS-TIVDCLK---DLDVSIKRRAMELSFA 376 (618)
T ss_dssp HHHTC----------SSTTTHHHHHHHHHHHHHHHHH---------HHGGGHH-HHHHGGG---SSCHHHHHHHHHHHHH
T ss_pred HHHhC----------CCCchHHHHHHHHHHHHhhCHH---------HHHHHHH-HHHHHcc---CCChhHHHHHHHHHHH
Confidence 33332 1236799999999998753111 1222222 3344555 6789999999999999
Q ss_pred hhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHH
Q 046316 477 FSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQ 556 (966)
Q Consensus 477 f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~ 556 (966)
++..-+ ...++..++..+.. .+.-+|..++.++..++... .|.....+..+++++..........++..+.
T Consensus 377 l~~~~n---v~~iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~-----~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~ 447 (618)
T 1w63_A 377 LVNGNN---IRGMMKELLYFLDS-CEPEFKADCASGIFLAAEKY-----APSKRWHIDTIMRVLTTAGSYVRDDAVPNLI 447 (618)
T ss_dssp HCCSSS---THHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSS-----CCCHHHHHHHHHHHHHHTGGGSCSSHHHHHH
T ss_pred Hccccc---HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHh-----CccHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 976532 34455666666653 35678999999999998652 2334444566666666555444444556666
Q ss_pred HHHhhcc-hhhcccccchHHHHHHHHhh-cCChhHHHHHHHHHHHHHcC-CC-----c--HHHHHHhhhcchHhhhcCCC
Q 046316 557 AAIKAGF-LTASMEPMISPLILNIWALH-VSDPFISIDAIEVLEAIKCS-PG-----C--IHQLASRILPYVGPILNNPQ 626 (966)
Q Consensus 557 ~~i~~~~-~~~~~~~~l~p~~l~l~~~~-~~d~~~~~~~~~~l~~l~~~-~~-----~--~~~l~~~~lP~l~~~l~~~~ 626 (966)
.++...+ ... ..++.+.+.+... ..++..+ .+..++...+.. +. . .......+++.+...+....
T Consensus 448 ~ii~~~p~l~~----~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 522 (618)
T 1w63_A 448 QLITNSVEMHA----YTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNM 522 (618)
T ss_dssp HHHHHSCSTHH----HHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTT
T ss_pred HHHhcChhHHH----HHHHHHHHHHhcccccHHHHH-HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccC
Confidence 6666544 111 2334444543432 3455544 456677665421 10 0 00011234455555554321
Q ss_pred CCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHH
Q 046316 627 QQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATF 686 (966)
Q Consensus 627 ~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~ 686 (966)
+.......++..+.-+.-+.|. .-+. +..++.....+.|.++.+.|.+.++-+
T Consensus 523 -~~~~vr~~~lta~~Kl~~~~~~-~~~~-----l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 523 -STSVTRGYALTAIMKLSTRFTC-TVNR-----IKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSS-CHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCcc-hHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 1112223333333223223332 2222 233344445677889999988877654
No 41
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.28 E-value=9.1e-06 Score=95.55 Aligned_cols=349 Identities=12% Similarity=0.080 Sum_probs=206.0
Q ss_pred CCChhHHHHHHHHHHHhhhhcC-h--h--HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH--HHHH
Q 046316 461 HQYPFLYARIFASVARFSSAIS-D--G--VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM--MGLF 533 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~-~--~--~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l--~~il 533 (966)
++.+-+|..|+|.+.++...-+ + . .....++.++..|..+++..+|..|+.+|.+++.... .....+ ...+
T Consensus 85 s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~--~~~~~~~~~g~i 162 (528)
T 4b8j_A 85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS--ENTKVVIDHGAV 162 (528)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--HHHHHHHhCCcH
Confidence 6778999999999999976532 1 1 1123567777888755347899999999999987521 111111 1356
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcc-cccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHHH
Q 046316 534 SSLADLLHQARDETLHLVLETLQAAIKAGF-LTASM-EPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQL 610 (966)
Q Consensus 534 ~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~-~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~l 610 (966)
..|..++...+.+....++.+|..+....+ ....+ ....+|.++++ .+...++.++..+..+|..|+.. |..-...
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~l-L~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 241 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQ-LNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHT-CCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHH-HhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 778888887777788888888888876543 11111 12356777777 33345778888889999999854 5544456
Q ss_pred HHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHH-HHHhHHHHHHHhccCchHHhhhhHHHHHHHHhc
Q 046316 611 ASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAY-DVCFDAVIRIILQSEDHSEMQNATECLATFISG 689 (966)
Q Consensus 611 ~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~-~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~ 689 (966)
...++|.+...+... .......++..|..+....+. ....++ ..++|.|+.++. +.+..+...++.+|.++...
T Consensus 242 ~~~~l~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~ 316 (528)
T 4b8j_A 242 TRPALPALARLIHSN---DEEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLL-HPSPSVLIPALRTVGNIVTG 316 (528)
T ss_dssp HTTHHHHHHHHTTCC---CHHHHHHHHHHHHHHTSSCHH-HHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCHHHHHHHHHc-CCChhHHHHHHHHHHHHHcC
Confidence 688899999998754 235677888888888866432 222222 246788888875 45678899999999999875
Q ss_pred CccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHH-HHHHHHHHHHHHhhhHHHHH
Q 046316 690 GRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIR-DLVAALVRRLQSAQIAGLRS 768 (966)
Q Consensus 690 ~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~-~iL~a~~~rL~~~~~~~~~~ 768 (966)
.......-- + ...+. .+.++|....+......++..+..+....+......+. .++..++..|... ...++.
T Consensus 317 ~~~~~~~~~-~-~~~l~----~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~ 389 (528)
T 4b8j_A 317 DDAQTQCII-D-HQALP----CLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKK 389 (528)
T ss_dssp CHHHHHHHH-T-TTHHH----HHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHH
T ss_pred CHHHHHHHH-H-hhhHH----HHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHH
Confidence 332110000 0 12233 33344432212222334444444444322121222221 3444555555443 566777
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHHHccC
Q 046316 769 SLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTR 838 (966)
Q Consensus 769 ~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~~~ 838 (966)
..+..++++...+ +++ ....|.. ...+..+ +..+.. ....-++.++-+|..|+..+
T Consensus 390 ~a~~aL~nl~~~~--~~~-~~~~l~~------~~~i~~L----~~lL~~-~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 390 EAAWAISNATSGG--SHD-QIKYLVS------EGCIKPL----CDLLIC-PDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHS--CHH-HHHHHHH------TTCHHHH----HHGGGC-SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHH-HHHHHHH------CCCHHHH----HHHHcC-CCHHHHHHHHHHHHHHHHHH
Confidence 7888888887652 344 3444421 1233333 333322 22334555667777777544
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.17 E-value=0.0018 Score=77.83 Aligned_cols=494 Identities=11% Similarity=0.057 Sum_probs=267.4
Q ss_pred cchHHHHHHHhcccCchhhHhHHHHHHHHHHhhcccc-chhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Q 046316 113 PDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDA-IVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAML 191 (966)
Q Consensus 113 P~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~-~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l 191 (966)
...++.|+.++++. ++..+..|+.+|..++++-... .+. -.+..++.|.+.+.+.. +..+|..|+..++.+..
T Consensus 13 ~g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~~~~~i~-~~~~~i~~Lv~~L~~~~--~~~~~~~A~~~L~~Ls~-- 86 (644)
T 2z6h_A 13 TRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVRTMQNTN--DVETARCTAGTLHNLSH-- 86 (644)
T ss_dssp TTTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTTHHHHHT-TCHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHTT--
T ss_pred hchHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCChhHHHHH-hccChHHHHHHHHhcCC--CHHHHHHHHHHHHHHhc--
Confidence 35788899999874 8889999999999999865421 111 01356788888887542 46677767665553221
Q ss_pred HhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhH-HHHHHHHHHHH
Q 046316 192 GVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFL-VVVRSLWQTFV 270 (966)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~-~~~~~~~~~~~ 270 (966)
. .. ....+... .-++.++.+|+.+ +..++..++.+|..+............. ..++.+.+
T Consensus 87 -----~-~~-~~~~i~~~--g~i~~Lv~lL~~~-------~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~--- 147 (644)
T 2z6h_A 87 -----H-RE-GLLAIFKS--GGIPALVKMLGSP-------VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA--- 147 (644)
T ss_dssp -----S-HH-HHHHHHTT--THHHHHHHHTTCS-------SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH---
T ss_pred -----C-hh-hHHHHHHc--CCHHHHHHHHhCC-------CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH---
Confidence 1 11 11112121 3456677777652 3468999999999998776432111111 12221111
Q ss_pred HhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhc-ChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHH
Q 046316 271 SSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVG-SAKLVKVIASNVRELVYHTIAFLQMTEQQIHI 349 (966)
Q Consensus 271 ~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~-~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~ 349 (966)
.+.. . + .++...+...+..+.. .+..+..+... ..+..++..+.-..
T Consensus 148 ---------lL~~-----------~----~-~~~~~~a~~~L~~La~~~~~~~~~i~~~--g~v~~Lv~lL~~~~----- 195 (644)
T 2z6h_A 148 ---------LLNK-----------T----N-VKFLAITTDCLQILAYGNQESKLIILAS--GGPQALVNIMRTYT----- 195 (644)
T ss_dssp ---------GGGC-----------C----C-HHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHTTCC-----
T ss_pred ---------HHCc-----------C----C-HHHHHHHHHHHHHHHhcCcHHHHHHHHc--CChHHHHHHHHcCC-----
Confidence 1110 0 0 2444555566666553 44444333211 12333443332111
Q ss_pred HhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHH-----HHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 046316 350 WSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDA-----IIDAASKRFNESQQEKAAGSTVWWRMREATLFAL 424 (966)
Q Consensus 350 w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~-----l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~al 424 (966)
...++..+..+|..++..-. .-.. .++.+.+.+.. ..-..++.++.++
T Consensus 196 ---------------~~~~~~~a~~~L~nLs~~~~--~~~~l~~~g~l~~L~~ll~~----------~~~~~~~~a~~~L 248 (644)
T 2z6h_A 196 ---------------YEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTD----------PSQRLVQNCLWTL 248 (644)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCTT--HHHHHHHTTHHHHHHTTTTC----------SCHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhc----------CCHHHHHHHHHHH
Confidence 01234456666666653211 1111 12222222221 1356788888888
Q ss_pred HhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHH-----HHHHHHHhhhcC
Q 046316 425 AFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLE-----HFLSAAITTIAM 499 (966)
Q Consensus 425 g~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~-----~~l~~~~~~L~~ 499 (966)
+.++..- .. ...+...+.. +...+. +..+-+|..|+|+++.++..- ++... ..++.++..|..
T Consensus 249 ~nL~~~~---~~----~~~~~~~i~~-Lv~lL~---~~d~~v~~~a~~aL~~L~~~~-~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 249 RNLSDAA---TK----QEGMEGLLGT-LVQLLG---SDDINVVTCAAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHGGGC---TT----CCSCHHHHHH-HHHHTT---CSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHhhcc---hh----hhhhhhHHHH-HHHHHc---CCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHHc
Confidence 8876421 11 0112233332 223344 677899999999999997642 11111 245566666653
Q ss_pred CC-CCcEehhHHHHHHhhcccCCCC-CccccH--HHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhcc-hhhcccccch
Q 046316 500 DV-PPPVKVGACRALSELLPKANKG-NFQPQM--MGLFSSLADLLHQARD-ETLHLVLETLQAAIKAGF-LTASMEPMIS 573 (966)
Q Consensus 500 ~~-~~~Vr~~A~~al~~~~~~~~~~-~l~p~l--~~il~~L~~ll~~~~~-d~l~~~le~l~~~i~~~~-~~~~~~~~l~ 573 (966)
.. ...||..|+.+|.+++...... ..+..+ ...+..|.+++....+ +....++.+|..+..... ...-....++
T Consensus 317 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i 396 (644)
T 2z6h_A 317 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI 396 (644)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHH
T ss_pred cCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCH
Confidence 22 2578999999999997542110 111101 1345677777776643 566666666666543322 1111123456
Q ss_pred HHHHHHHHhhc--------------------CChhHHHHHHHHHHHHHcCCCcHHHH-HHhhhcchHhhhcCCCCCCchh
Q 046316 574 PLILNIWALHV--------------------SDPFISIDAIEVLEAIKCSPGCIHQL-ASRILPYVGPILNNPQQQPDGL 632 (966)
Q Consensus 574 p~~l~l~~~~~--------------------~d~~~~~~~~~~l~~l~~~~~~~~~l-~~~~lP~l~~~l~~~~~~~~~~ 632 (966)
|.++++..... .+..++..+..+|..|+..+..-..+ ...++|.+...+.... ...
T Consensus 397 ~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~---~~v 473 (644)
T 2z6h_A 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI---ENI 473 (644)
T ss_dssp HHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSC---HHH
T ss_pred HHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCC---HHH
Confidence 77777643311 12345566777888777555433333 4567899999887542 245
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHH-HHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHH-HHH
Q 046316 633 VAGSLDLLTMLLKSASTDVVKAAYD-VCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRS-LLD 710 (966)
Q Consensus 633 ~~~al~ll~~l~~~~~~~l~~~~~~-~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~-il~ 710 (966)
...++..+..+... ++....+.+ ..++.|..++ ++.+.++.+.+..+|.++...... .|... .+.
T Consensus 474 ~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll-~~~~~~vr~~A~~aL~~l~~~~~~----------~~~~~~~~~ 540 (644)
T 2z6h_A 474 QRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMSEDKPQ----------DYKKRLSVE 540 (644)
T ss_dssp HHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTSCH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHH-cCCCHHHHHHHHHHHHHHhccCcH----------hhhcccchH
Confidence 66677777777643 223222211 2356667665 567889999999999988665321 23221 366
Q ss_pred HHHhhcCC
Q 046316 711 AASRLLNP 718 (966)
Q Consensus 711 i~~~lL~~ 718 (966)
++.+++..
T Consensus 541 il~~~~~~ 548 (644)
T 2z6h_A 541 LTSSLFRT 548 (644)
T ss_dssp HHHHHSCC
T ss_pred HHHHHHhC
Confidence 77777643
No 43
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.11 E-value=0.0044 Score=73.75 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=96.0
Q ss_pred HHHHHHhcCCCHHHhHHHHHHHHhhccC-c-HHHHHHHHhhhcccccccccc-------CCCCChHHHHHHHHHHHHHh-
Q 046316 16 LNCLSATLDPNQEVRSFAEVSLNQASLQ-P-AAVLLKHFIKKHWQEGEESFE-------LPAVSSEEKEVIRKLLLSSL- 85 (966)
Q Consensus 16 ~~~L~~~ls~d~~~R~~AE~~L~~~~~~-p-A~i~LKn~I~~~W~~~~~~~~-------~~~i~~~~K~~IR~~Ll~~L- 85 (966)
.+++....|+|...||-+-..+..+.+. | -+++.=|.+.+.-....+..+ +.-..++--+.+-..+.++|
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~ 156 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILV 156 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 4455556677778888777777766554 4 334444444443332211100 00122333334444556677
Q ss_pred -hhchHHHHHHHHHHHHHHHhccCCCCcc--chHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 046316 86 -DDTHRKICTAISMAVASIAAYDWPEDWP--DLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVL 162 (966)
Q Consensus 86 -~~~~~kIr~~~a~~Is~Ia~~D~P~~WP--~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L 162 (966)
.++++-||+.++.|+.+|.+.+ |+.=+ ++++.+..+|.+. |+..+.+|+.+|.+++.+-. +.+...++.++..|
T Consensus 157 ~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~~-~~~~~~~~~~~~~L 233 (621)
T 2vgl_A 157 AGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKNP-EEFKTSVSLAVSRL 233 (621)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCH-HHHTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHH
Confidence 7889999999999999999954 76555 7888888999774 88899999999999987532 23445556666666
Q ss_pred HHHhc
Q 046316 163 HTIVS 167 (966)
Q Consensus 163 ~~i~~ 167 (966)
.+++.
T Consensus 234 ~~ll~ 238 (621)
T 2vgl_A 234 SRIVT 238 (621)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.08 E-value=0.0068 Score=70.64 Aligned_cols=493 Identities=11% Similarity=0.055 Sum_probs=256.1
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHhccCCC----CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc-cchh
Q 046316 78 RKLLLSSLDDTHRKICTAISMAVASIAAYDWPE----DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD-AIVP 152 (966)
Q Consensus 78 R~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~----~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~-~~~~ 152 (966)
-..|+..|.+++..+|..++.++..++..+-.. .=++.++.|++.+.++.++.....|..+|..+..+-.. ..+.
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 98 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 98 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 345666778889999999999999999755211 12468899999997644777888999999988764211 1121
Q ss_pred hhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCCh
Q 046316 153 KLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDD 232 (966)
Q Consensus 153 ~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~ 232 (966)
-...+|.|.+++.+.. ..++..|+.++..+... ... ....+.+ ...++.++.++.. ++
T Consensus 99 --~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~-------~~~-~~~~i~~--~g~i~~L~~ll~~-------~~ 156 (529)
T 1jdh_A 99 --KSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLH-------QEG-AKMAVRL--AGGLQKMVALLNK-------TN 156 (529)
T ss_dssp --HTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHH-------CTT-HHHHHHH--HTHHHHHHHGGGC-------CC
T ss_pred --HcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhcC-------Ccc-hHHHHHH--cCCHHHHHHHHhc-------CC
Confidence 2357888899887653 67777777776665431 001 1111111 2345566777765 23
Q ss_pred hhHHHHHHHHHHHHHHhcchhhHHhhH-HHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHH
Q 046316 233 WGVKMEVLKCLNQFIQNFPSLAESEFL-VVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEF 311 (966)
Q Consensus 233 ~~lk~~~~~~L~~l~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~ef 311 (966)
+.++..+..+|..+....+..-..... ..++.+.+.+.. + + .+.....+...
T Consensus 157 ~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~----~----------------~-------~~~~~~~a~~~ 209 (529)
T 1jdh_A 157 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT----Y----------------T-------YEKLLWTTSRV 209 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH----C----------------C-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh----C----------------C-------hHHHHHHHHHH
Confidence 567777777887766432221000000 112222222211 0 0 03455556666
Q ss_pred HHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhCh-hhHHH
Q 046316 312 LLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGR-EGIDA 390 (966)
Q Consensus 312 l~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~-~~~~~ 390 (966)
+.++...+..+..+... ..+..++..+.-+ ...+|..|...|..++...+. .....
T Consensus 210 L~~l~~~~~~~~~~~~~--g~~~~L~~ll~~~---------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~ 266 (529)
T 1jdh_A 210 LKVLSVCSSNKPAIVEA--GGMQALGLHLTDP---------------------SQRLVQNCLWTLRNLSDAATKQEGMEG 266 (529)
T ss_dssp HHHHTTSTTHHHHHHHT--THHHHHHTTTTSS---------------------CHHHHHHHHHHHHHHHTTCTTCSCCHH
T ss_pred HHHHhcCcccHHHHHHC--CCHHHHHHHHhCC---------------------ChHHHHHHHHHHHHHhcCChhhHHHHh
Confidence 66666555554433211 1344444444211 123456677777777765432 12234
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHH
Q 046316 391 IIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARI 470 (966)
Q Consensus 391 l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra 470 (966)
+++.+.+.+.. .+...++.+..+++.++..-.+.... ......-+.+.+.+.. .+..+-++..|
T Consensus 267 ~i~~L~~ll~~----------~~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~~~v~~L~~ll~~-----~~~~~~v~~~a 330 (529)
T 1jdh_A 267 LLGTLVQLLGS----------DDINVVTCAAGILSNLTCNNYKNKMM-VCQVGGIEALVRTVLR-----AGDREDITEPA 330 (529)
T ss_dssp HHHHHHHHTTC----------SCHHHHHHHHHHHHHHTTTCHHHHHH-HHHTTHHHHHHHHHHH-----HTTCHHHHHHH
T ss_pred HHHHHHHHHcC----------CCHHHHHHHHHHHHHHhcCCHHHHHH-HHHcCChHHHHHHHHc-----cCCHHHHHHHH
Confidence 45555555532 24678899999998886421111100 0001111112222211 13447899999
Q ss_pred HHHHHHhhhhcCh-h-HHH-----HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH-HHHHHHHHHHHhh
Q 046316 471 FASVARFSSAISD-G-VLE-----HFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM-MGLFSSLADLLHQ 542 (966)
Q Consensus 471 ~~~l~~f~~~~~~-~-~~~-----~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l-~~il~~L~~ll~~ 542 (966)
+++++.++...+. + ... ..++.++..|.++.+..+|..|+.++.++..... ..+... ..++..|..++..
T Consensus 331 ~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~~~i~~L~~ll~~ 408 (529)
T 1jdh_A 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--NHAPLREQGAIPRLVQLLVR 408 (529)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG--GHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh--hhHHHHHcCCHHHHHHHHHH
Confidence 9999999765322 1 111 2356677777654334799999999999986421 101111 1223334444432
Q ss_pred cChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHH-HHHhhhcchHhh
Q 046316 543 ARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQ-LASRILPYVGPI 621 (966)
Q Consensus 543 ~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~-l~~~~lP~l~~~ 621 (966)
.+.++...+.-++... .+....+...+...+..++..++..++.... .....+|.+...
T Consensus 409 ~~~~v~~~a~~~l~n~--------------------~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~l 468 (529)
T 1jdh_A 409 AHQDTQRRTSMGGTQQ--------------------QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 468 (529)
T ss_dssp HHHHHC-------------------------------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred HhHHHHHHHhcccCch--------------------hhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHH
Confidence 2222111111111000 0000111122333445566666544332222 234667888888
Q ss_pred hcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHH-HHhHHHHHHHhccCchHHhhhhHHHHHHH
Q 046316 622 LNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYD-VCFDAVIRIILQSEDHSEMQNATECLATF 686 (966)
Q Consensus 622 l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~-~~fp~l~~~l~~s~d~~~lq~~~~~l~~~ 686 (966)
+..+. ......+...+..+... ++....+.+ ...+.|..++ ++.+.++...+..+|.++
T Consensus 469 l~~~~---~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~-~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 469 LYSPI---ENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GGCSC---HHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHH
T ss_pred HcCCc---hHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHh-cCCCHHHHHHHHHHHHhc
Confidence 87542 24556666666666532 222222211 2356667665 567788888888877654
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.04 E-value=0.018 Score=68.42 Aligned_cols=451 Identities=14% Similarity=0.116 Sum_probs=218.3
Q ss_pred hHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHh--cccCchhhHhHHHHHHHHHHhhccc
Q 046316 71 SEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLI--TDQSNMNGVHGGLRCLALLSADLDD 148 (966)
Q Consensus 71 ~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l--~s~~~~~~~~~aL~~L~~l~~~l~~ 148 (966)
++.-..+=+.+.+-|.+++..+|..+..+++.|.. |+--+.+++.+.+++ .+. ++.....|..++..+++. ..
T Consensus 106 ~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~-~~~VRK~A~~al~kl~~~-~p 180 (621)
T 2vgl_A 106 SELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDT-MDSVKQSAALCLLRLYRT-SP 180 (621)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSS-CHHHHHHHHHHHHHHHHH-CG
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHh-Ch
Confidence 33333444555566788999999988888888865 556778999999999 664 788889999999999983 32
Q ss_pred cchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCC-
Q 046316 149 AIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQP- 227 (966)
Q Consensus 149 ~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~- 227 (966)
+.+.. +.+++.+..++.+. ++.++..|+.++..+... .++.+.+.++..++.+.+++....-+
T Consensus 181 ~~~~~--~~~~~~l~~lL~d~---d~~V~~~a~~~l~~i~~~-----------~~~~~~~~~~~~~~~L~~ll~~~~~~~ 244 (621)
T 2vgl_A 181 DLVPM--GDWTSRVVHLLNDQ---HLGVVTAATSLITTLAQK-----------NPEEFKTSVSLAVSRLSRIVTSASTDL 244 (621)
T ss_dssp GGCCC--CSCHHHHHHHTTCS---CHHHHHHHHHHHHHHHHH-----------CHHHHTTHHHHHHHHHHHHHHCCSSSC
T ss_pred hhcCc--hhHHHHHHHHhCCC---CccHHHHHHHHHHHHHHh-----------ChHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 22221 26788888888643 456777777766654431 12233445555555565555431000
Q ss_pred CC------CChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHH---------H--h--HHHHH--HhhccCCCC
Q 046316 228 ED------PDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFV---------S--S--LRVYT--RSSIEGTED 286 (966)
Q Consensus 228 ~d------~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~---------~--~--~~~y~--~~~i~~~~~ 286 (966)
.+ ++.| ++..+++.+..+...-.......+..++..+.+... + . +=.|. +..+..
T Consensus 245 ~~~~~~~~~~~w-~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l--- 320 (621)
T 2vgl_A 245 QDYTYYFVPAPW-LSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHH--- 320 (621)
T ss_dssp STTEETTEESHH-HHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred cchhhcCCCCch-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhc---
Confidence 00 1344 444445544443211000111112222222111100 0 0 00000 000000
Q ss_pred CCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHH-HhhcCCHHHHHHHhhCHHHHhhccc-CC
Q 046316 287 PYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTI-AFLQMTEQQIHIWSIDANQFLADED-ES 364 (966)
Q Consensus 287 ~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li-~~~~lt~ed~e~w~~Dp~~fv~de~-d~ 364 (966)
++ ...++..++..+...+..+. +++.-+.-..+ ..+.... +.+....--..|+.--. ++
T Consensus 321 ------~~------~~~~~~~~~~~L~~~L~~~~------~niry~aL~~l~~l~~~~~-~~~~~~~~~~~i~~~L~~d~ 381 (621)
T 2vgl_A 321 ------DS------EPNLLVRACNQLGQFLQHRE------TNLRYLALESMCTLASSEF-SHEAVKTHIETVINALKTER 381 (621)
T ss_dssp ------CC------CHHHHHHHHHHHHHHSSCSC------HHHHHHHHHHHHHHTTCTT-THHHHHTTHHHHHHHHTTCC
T ss_pred ------CC------cHHHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhccCC
Confidence 00 02233333333333332111 11111111111 1222111 01111222223332111 22
Q ss_pred ccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccH
Q 046316 365 TYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRL 444 (966)
Q Consensus 365 ~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~ 444 (966)
..++|..|.++|..++.. ..+..++..+...+... +-..|..++.++|.++..+. -+.
T Consensus 382 d~~Ir~~aL~lL~~l~~~---~Nv~~Iv~eL~~yl~~~----------d~~~~~~~v~~I~~la~k~~---------~~~ 439 (621)
T 2vgl_A 382 DVSVRQRAVDLLYAMCDR---SNAQQIVAEMLSYLETA----------DYSIREEIVLKVAILAEKYA---------VDY 439 (621)
T ss_dssp CHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHC---------SST
T ss_pred CHhHHHHHHHHHHHHcCh---hhHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHhcC---------CcH
Confidence 366999999999888754 23556666666666541 23567778889999886531 112
Q ss_pred HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCC-cEehhHHHHHHhhcccC-CC
Q 046316 445 GELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPP-PVKVGACRALSELLPKA-NK 522 (966)
Q Consensus 445 ~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~-~Vr~~A~~al~~~~~~~-~~ 522 (966)
..++. .+...+. ....++...+...+-+.....+ +........++..+.++... .+-..|+..+..|.+.. ..
T Consensus 440 ~~~v~-~Ll~ll~---~~~~~v~~ev~~~l~~ii~~~~-~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~ 514 (621)
T 2vgl_A 440 TWYVD-TILNLIR---IAGDYVSEEVWYRVIQIVINRD-DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD 514 (621)
T ss_dssp HHHHH-HHHHHHH---HHGGGSCSHHHHHHHHHHGGGC-SCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS
T ss_pred HHHHH-HHHHHHH---hhcccchHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhccc
Confidence 22222 2222232 1223344444333333333322 22233444455566532111 22223557777776542 11
Q ss_pred CCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHH--Hhh--cCChhHHHHHHHHHH
Q 046316 523 GNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIW--ALH--VSDPFISIDAIEVLE 598 (966)
Q Consensus 523 ~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~--~~~--~~d~~~~~~~~~~l~ 598 (966)
..+.| ..++..+.+-+...+..+...++-++...+...+ ++.+.+..++ ..+ ..|+.++-.+.+...
T Consensus 515 ~~~~p--~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-------~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 515 PRSSP--LIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-------EVKATIQDVLRSDSQLKNADVELQQRAVEYLR 585 (621)
T ss_dssp TTSCH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-------GGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHH
T ss_pred CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 12222 2345555555555666788888888877665433 2334444443 333 567778877777665
Q ss_pred HHH
Q 046316 599 AIK 601 (966)
Q Consensus 599 ~l~ 601 (966)
-+.
T Consensus 586 Ll~ 588 (621)
T 2vgl_A 586 LST 588 (621)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
No 46
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.02 E-value=4.2e-05 Score=80.00 Aligned_cols=182 Identities=12% Similarity=0.077 Sum_probs=129.2
Q ss_pred chhHHHHHHHHHHHh-hHHHHHHhHhcCCccccHHHHHHHHHhhhh-cCCCCCChhHHHHHHHHHHHhhhhcC-h----h
Q 046316 412 VWWRMREATLFALAF-LSEQLLEAEVSGLTSVRLGELLEQMITEDI-GTGVHQYPFLYARIFASVARFSSAIS-D----G 484 (966)
Q Consensus 412 ~~w~~rEaaL~alg~-l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l-~~~~~~~~~Lr~Ra~~~l~~f~~~~~-~----~ 484 (966)
..|+.|-+++..++. +.+++.+-.. . .-++..++. .+...+ + +.++.+|..||-++|.+++.+. + .
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~-~--~~~~~~~~~-~L~~~l~~---D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKS-T--SQNYSNLLG-IYGHIIQK---DANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCC-T--TCCCHHHHH-HHHHHHHH---CSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcccc-C--cccHHHHHH-HHHHHhcc---CCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 369999999999988 7543110000 0 112334333 333445 4 7899999999999999998765 2 4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcch
Q 046316 485 VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFL 564 (966)
Q Consensus 485 ~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~ 564 (966)
+...++..++..+. +....||-+|..|+..+++..++....+++..+++.|+..+....-.....++..|...+...+.
T Consensus 101 y~~~llp~ll~~l~-dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTK-EKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGG-CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 66778888888886 44568999999999999987644444456999999999999876666777888888887765321
Q ss_pred ----hhccc-ccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC
Q 046316 565 ----TASME-PMISPLILNIWALHVSDPFISIDAIEVLEAIKCS 603 (966)
Q Consensus 565 ----~~~~~-~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~ 603 (966)
...+. ..++|.+.+.. +..++.+|..+.+|+..+...
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l--~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIV--NDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHH--TCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHH
Confidence 11233 57788877773 455778999999999998743
No 47
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.94 E-value=0.00016 Score=75.31 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=129.8
Q ss_pred CccchhhHHHHHHHHHHHHhCh---hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCc
Q 046316 364 STYSCRVSGALLLEEVVSYCGR---EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLT 440 (966)
Q Consensus 364 ~~~s~R~aa~~lL~~L~~~~~~---~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~ 440 (966)
..|..|.+|...|..+++..++ ..+..+++.+...+.. + .+.+.+.+++.++|.++..+..
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~k--------d-~~~~V~~~a~~~l~~la~~l~~------- 90 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK--------D-SNVVLVAMAGKCLALLAKGLAK------- 90 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHH--------C-SCHHHHHHHHHHHHHHHHHHGG-------
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhcc--------C-CCHHHHHHHHHHHHHHHHHHhh-------
Confidence 4699999999999999887432 2245667777776642 1 2468899999999999976521
Q ss_pred cccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC
Q 046316 441 SVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA 520 (966)
Q Consensus 441 ~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~ 520 (966)
.+.+++..++.+.+....+..+.+|..|+-++..+....+ ...+++.+...|.+ .+..||..++..+..++...
T Consensus 91 --~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 91 --RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSN-KNPSVKSETALFIARALTRT 164 (242)
T ss_dssp --GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTC
T ss_pred --hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHc
Confidence 2344444444444332237889999999999999988764 45678888888874 36789999999999987653
Q ss_pred -CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHh
Q 046316 521 -NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIK 560 (966)
Q Consensus 521 -~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~ 560 (966)
+.....++++.++..+..++++...++...+.+++..+..
T Consensus 165 ~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 165 QPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2335789999999999999998888888877777766654
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.85 E-value=0.00038 Score=81.57 Aligned_cols=265 Identities=11% Similarity=0.132 Sum_probs=164.4
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCcccc-HHHHHHHHHhhhhcCC--CCCChhHHHHHHHHHHHhhhhcC----hhH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVR-LGELLEQMITEDIGTG--VHQYPFLYARIFASVARFSSAIS----DGV 485 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~-~~~~l~~~i~~~l~~~--~~~~~~Lr~Ra~~~l~~f~~~~~----~~~ 485 (966)
....+|.|+.+||.++..-.+.... ..... +..++ ..+... .....-++..++|+++.++.... ...
T Consensus 175 ~~~v~e~A~~aL~nLa~~~~~~r~~-i~~~g~i~~Ll-----~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 248 (529)
T 3tpo_A 175 HAHISEQAVWALGNIAGAGSAFRDL-VIKHGAIDPLL-----ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 248 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTCHHHHH-----HTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHH
T ss_pred CHHHHHHHHHHHHHHhccCHHHHHH-HHHcCCcHHHH-----HHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 3578999999999997421111110 00000 22211 222210 11223466778999999987532 244
Q ss_pred HHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCcccc-HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-
Q 046316 486 LEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQ-MMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF- 563 (966)
Q Consensus 486 ~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~-l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~- 563 (966)
...+++.++..|.++ +..|+..||.||.+++.... +..+.. -..++..|..++...+......++.+|..+...++
T Consensus 249 ~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~ 326 (529)
T 3tpo_A 249 VEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPN-ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 326 (529)
T ss_dssp HHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCH-HHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhh-hhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchH
Confidence 567788888887643 66789999999999886531 000000 01234566777777777778888888877765433
Q ss_pred hhhc-ccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHH-HHHhhhcchHhhhcCCCCCCchhhHHHHHHH
Q 046316 564 LTAS-MEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQ-LASRILPYVGPILNNPQQQPDGLVAGSLDLL 640 (966)
Q Consensus 564 ~~~~-~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~-l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll 640 (966)
.+.. .....+|.+.++ .+ ..++.++..+..+|..|+.. +..... ...-++|.+...+.... ......|.-.+
T Consensus 327 ~~~~i~~~g~l~~L~~L-L~-~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL 401 (529)
T 3tpo_A 327 QTQKVIDAGALAVFPSL-LT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD---FKTQKAAAWAI 401 (529)
T ss_dssp HHHHHHHTTGGGGHHHH-TT-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC---HHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHHH-Hc-CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC---HHHHHHHHHHH
Confidence 2211 122345767776 32 45667788888888888743 332222 34568899999987652 35667788888
Q ss_pred HHHhhcCChhHHHHHHH-HHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 641 TMLLKSASTDVVKAAYD-VCFDAVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 641 ~~l~~~~~~~l~~~~~~-~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
+.++.+........+++ -+.|+|++++ .+.|..+++.++.+|.+++..+.
T Consensus 402 ~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 402 TNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhH
Confidence 88887665443333332 3678889887 46789999999999999987653
No 49
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00075 Score=70.39 Aligned_cols=199 Identities=8% Similarity=-0.014 Sum_probs=138.5
Q ss_pred hcCCCHHHhHHHHHHHHh-hc-cCcHHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHh-hhchHHHHHHHHH
Q 046316 22 TLDPNQEVRSFAEVSLNQ-AS-LQPAAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSL-DDTHRKICTAISM 98 (966)
Q Consensus 22 ~ls~d~~~R~~AE~~L~~-~~-~~pA~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L-~~~~~kIr~~~a~ 98 (966)
..|++-..|++|=..|.. +. ..| +.+.. ..+-..+-+.|.+.+ .+++..+|..++.
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~----------~i~~~-----------~~~~~~~~~~L~~~l~~D~n~~v~~~A~~ 83 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTK----------KLKST-----------SQNYSNLLGIYGHIIQKDANIQAVALAAQ 83 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCC----------CBCCT-----------TCCCHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCC----------ccccC-----------cccHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 358899999998888877 53 333 22210 111012345567778 7899999999999
Q ss_pred HHHHHHhccCCCCc-----cchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCCCCCc
Q 046316 99 AVASIAAYDWPEDW-----PDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYD 173 (966)
Q Consensus 99 ~Is~Ia~~D~P~~W-----P~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~ 173 (966)
+++.||..--...+ ..++|.++..+.+. ....+..+-.+|..+++..+.....+..+.+++.++..+++. +
T Consensus 84 al~~la~~l~~~~f~~~y~~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k---~ 159 (249)
T 2qk1_A 84 SVELICDKLKTPGFSKDYVSLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK---T 159 (249)
T ss_dssp HHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS---S
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC---C
Confidence 99999964320234 46889999998874 566667788888888887654222222567888888888765 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhh-HHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcch
Q 046316 174 RYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPML-KPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPS 252 (966)
Q Consensus 174 ~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l-~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~ 252 (966)
+.+|..+++.+..|+..-.. .+..+.+++ +..++.+..++.. .+-.+|..+++++..+...+++
T Consensus 160 ~~vk~~al~~l~~~~~~~~~--------~~~~l~~~l~~~iip~l~~~l~D-------~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKD--------GYSTLQRYLKDEVVPIVIQIVND-------TQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCS--------CSHHHHHHHTTTHHHHHHHHHTC-------SSHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHcCC--------cchhHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhCH
Confidence 68999899988888764110 113355677 8888888888853 2456999999999999999996
Q ss_pred -hhHHhhHH
Q 046316 253 -LAESEFLV 260 (966)
Q Consensus 253 -~~~~~~~~ 260 (966)
.+.|+++.
T Consensus 225 ~~~~p~l~~ 233 (249)
T 2qk1_A 225 NTFVKTLEH 233 (249)
T ss_dssp GGGHHHHHH
T ss_pred HHHHHHHHH
Confidence 47777654
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.70 E-value=0.0042 Score=72.68 Aligned_cols=263 Identities=11% Similarity=0.108 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHH-----
Q 046316 414 WRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEH----- 488 (966)
Q Consensus 414 w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~----- 488 (966)
...+..|..+|+.++..-.+.... ...... +. .+...+. ++++-+|..|+|+++.++..- ++....
T Consensus 134 ~~~q~~Aa~aL~nia~~~~~~~~~-vv~~Ga---ip-~Lv~LL~---s~~~~v~e~A~~aL~nLa~~~-~~~r~~i~~~g 204 (529)
T 3tpo_A 134 SPIQFESAWALTNIASGTSEQTKA-VVDGGA---IP-AFISLLA---SPHAHISEQAVWALGNIAGAG-SAFRDLVIKHG 204 (529)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHH-HHHTTH---HH-HHHHHTT---CSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHH-HHHCCC---HH-HHHHHHc---CCCHHHHHHHHHHHHHHhccC-HHHHHHHHHcC
Confidence 566777778888887431111100 000011 11 1222344 788999999999999998642 222222
Q ss_pred HHHHHHhhhcCCCCC----cEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-
Q 046316 489 FLSAAITTIAMDVPP----PVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF- 563 (966)
Q Consensus 489 ~l~~~~~~L~~~~~~----~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~- 563 (966)
.+..++..|...... .++..|+.++.+++.......-......++..|..++...+.+.+..++.+|........
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~ 284 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 284 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh
Confidence 345666666533211 233457788888886532222223345677888888888888888888888877765432
Q ss_pred h-hhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCc--HHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHH
Q 046316 564 L-TASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGC--IHQLASRILPYVGPILNNPQQQPDGLVAGSLDLL 640 (966)
Q Consensus 564 ~-~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~--~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll 640 (966)
. ..-....++|.++++. ...++.++..+..++..++...+. ..-+...++|.+...+..+. ......++-.|
T Consensus 285 ~~~~v~~~g~i~~Lv~lL--~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~---~~i~~~a~~aL 359 (529)
T 3tpo_A 285 RIEMVVKKGVVPQLVKLL--GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK---TNIQKEATWTM 359 (529)
T ss_dssp HHHHHHTTTCHHHHHHHH--TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS---HHHHHHHHHHH
T ss_pred hHHHHHhccchHHHHHHh--cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCC---HHHHHHHHHHH
Confidence 1 1112345678888773 345677777788888888744332 22344568899999987642 34567788888
Q ss_pred HHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 641 TMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 641 ~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
+.+..+.+......+-..++|.++.++. +.+.++...+..+|.++...+.
T Consensus 360 ~nl~~~~~~~~~~v~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nl~~~~~ 409 (529)
T 3tpo_A 360 SNITAGRQDQIQQVVNHGLVPFLVGVLS-KADFKTQKAAAWAITNYTSGGT 409 (529)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhcccHHHHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCC
Confidence 8888765432222211236788888875 5678899999999999988754
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.68 E-value=0.0006 Score=79.46 Aligned_cols=265 Identities=11% Similarity=0.121 Sum_probs=161.7
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCcccc-HHHHHHHHHhhhhcCC--CCCChhHHHHHHHHHHHhhhhcC----hhH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVR-LGELLEQMITEDIGTG--VHQYPFLYARIFASVARFSSAIS----DGV 485 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~-~~~~l~~~i~~~l~~~--~~~~~~Lr~Ra~~~l~~f~~~~~----~~~ 485 (966)
....||.|+.+||.++..-.+.... ..... +..++ . .+... .....-+++.++|+++.++.... ...
T Consensus 156 ~~~v~e~A~~aL~nLa~d~~~~r~~-v~~~G~i~~Ll-~----lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 229 (510)
T 3ul1_B 156 HAHISEQAVWALGNIAGDGSAFRDL-VIKHGAIDPLL-A----LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 229 (510)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTCHHHHH-H----HTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHH-HHHcCChHHHH-H----HHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHH
Confidence 3688999999999997431111110 00000 22222 2 22210 11233466778999999987532 134
Q ss_pred HHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccc-cHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-
Q 046316 486 LEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQP-QMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF- 563 (966)
Q Consensus 486 ~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p-~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~- 563 (966)
...+++.++..|.+ .+..|+..||.||.+++.... +..+. .-..++..|..++...+......++.++..+...+.
T Consensus 230 ~~~~lp~L~~LL~~-~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~ 307 (510)
T 3ul1_B 230 VEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPN-ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 307 (510)
T ss_dssp HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHhHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhchh-hhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH
Confidence 56778888888764 366789999999999986531 00000 001234667777877777788888888877765443
Q ss_pred hhhcc-cccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHH-HHHhhhcchHhhhcCCCCCCchhhHHHHHHH
Q 046316 564 LTASM-EPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQ-LASRILPYVGPILNNPQQQPDGLVAGSLDLL 640 (966)
Q Consensus 564 ~~~~~-~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~-l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll 640 (966)
.+..+ ....+|.+.++ . ...++.++..+..++..|+.. +..... ....++|.+...+.... ......|.-.+
T Consensus 308 ~~~~i~~~g~l~~L~~L-L-~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~---~~v~~~Aa~aL 382 (510)
T 3ul1_B 308 QTQKVIDAGALAVFPSL-L-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD---FKTQKEAAWAI 382 (510)
T ss_dssp HHHHHHHTTGGGGCC-C-T-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC---HHHHHHHHHHH
T ss_pred HHHHHhhccchHHHHHH-h-cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC---HHHHHHHHHHH
Confidence 22111 12233544444 2 234566777788888888743 332222 34568899999998652 35567788888
Q ss_pred HHHhhcCChhHHHHHH-HHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 641 TMLLKSASTDVVKAAY-DVCFDAVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 641 ~~l~~~~~~~l~~~~~-~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
+.+..+........++ .-++++|++++ .+.|..++..+..+|.+++..+.
T Consensus 383 ~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 383 TNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhH
Confidence 8888776544333332 23678888876 56788999999999999988653
No 52
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.66 E-value=0.00045 Score=71.80 Aligned_cols=224 Identities=12% Similarity=0.104 Sum_probs=150.9
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHH-----HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH--HHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLE-----HFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM--MGLF 533 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~-----~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l--~~il 533 (966)
++++-+|..|+|+++.++..-+ +... ..++.+++.|.++ +..||..|+.+|.+++.... ..+..+ ...+
T Consensus 13 ~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i 88 (252)
T 4hxt_A 13 STDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPD--EAIKAIVDAGGV 88 (252)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCh--HHHHHHHHCCCH
Confidence 5669999999999999987643 1222 3567777777643 67899999999999986521 111111 1356
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhh-cccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCc-HHH
Q 046316 534 SSLADLLHQARDETLHLVLETLQAAIKAGF-LTA-SMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGC-IHQ 609 (966)
Q Consensus 534 ~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~-~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~-~~~ 609 (966)
..+..++...+.+....++.+|......++ ... -.....+|.++++ . ...++.++..+..++..++.. ++. ..-
T Consensus 89 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~-l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 166 (252)
T 4hxt_A 89 EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL-L-TSTDSEVQKEAARALANIASGPDEAIKAI 166 (252)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH-T-TCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH-H-cCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 778888887777888888888888774433 111 1122456777776 2 245677888888999988854 332 222
Q ss_pred HHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhc
Q 046316 610 LASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISG 689 (966)
Q Consensus 610 l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~ 689 (966)
....++|.+...+..+. ......++..+..+....+.......-..++|.+.+++. +.+..+...+..+|.++...
T Consensus 167 ~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 167 VDAGGVEVLVKLLTSTD---SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT-STDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHT
T ss_pred HHCcCHHHHHHHHCCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC-CCcHHHHHHHHHHHHHHHcC
Confidence 34568899999988542 356778888888888754322222111235788888774 56788999999999999987
Q ss_pred Cccce
Q 046316 690 GRQLM 694 (966)
Q Consensus 690 ~~~~~ 694 (966)
.+...
T Consensus 243 ~~~~~ 247 (252)
T 4hxt_A 243 GWLEH 247 (252)
T ss_dssp CBCCC
T ss_pred CCccc
Confidence 66543
No 53
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.65 E-value=0.0056 Score=71.21 Aligned_cols=263 Identities=11% Similarity=0.103 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHH-----
Q 046316 414 WRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEH----- 488 (966)
Q Consensus 414 w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~----- 488 (966)
...++.|..+|+.++.+-.+.... ...... +. .+...++ ++++-+|..|+|+++.++..-+ +....
T Consensus 115 ~~lq~~Aa~aL~nias~~~e~~~~-vv~~Ga---Ip-~Lv~lL~---s~~~~v~e~A~~aL~nLa~d~~-~~r~~v~~~G 185 (510)
T 3ul1_B 115 SPIQFESAWALTNIASGTSEQTKA-VVDGGA---IP-AFISLLA---SPHAHISEQAVWALGNIAGDGS-AFRDLVIKHG 185 (510)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHH-HHHTTH---HH-HHHHHTT---CSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHH-HHHCCC---HH-HHHHHHc---CCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHcC
Confidence 567777888999887432111110 000011 11 1222344 7889999999999999986532 22221
Q ss_pred HHHHHHhhhcCCCC----CcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-
Q 046316 489 FLSAAITTIAMDVP----PPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF- 563 (966)
Q Consensus 489 ~l~~~~~~L~~~~~----~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~- 563 (966)
.+..++..|..... ..++..|+.++.+++.......-......++..|..++...+.+.+..++.+|..+.....
T Consensus 186 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~ 265 (510)
T 3ul1_B 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265 (510)
T ss_dssp CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh
Confidence 34556666653211 1234457888888887532222223346677888888888888888888888877764332
Q ss_pred hh-hcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcH--HHHHHhhhcchHhhhcCCCCCCchhhHHHHHHH
Q 046316 564 LT-ASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCI--HQLASRILPYVGPILNNPQQQPDGLVAGSLDLL 640 (966)
Q Consensus 564 ~~-~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~--~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll 640 (966)
.. .-....++|.++++. ...++.++..+..++..++...+.. .-+...++|.+...+.++. ......++-.+
T Consensus 266 ~~~~i~~~g~i~~Lv~lL--~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~---~~v~~~A~~aL 340 (510)
T 3ul1_B 266 RIEMVVKKGVVPQLVKLL--GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK---TNIQKEATWTM 340 (510)
T ss_dssp HHHHHHTTTCHHHHHHHH--TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSS---HHHHHHHHHHH
T ss_pred hHHHHHhcccchhhhhhh--cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCC---HHHHHHHHHHH
Confidence 11 112235678888773 2456667777788888877443322 2234567888888887542 35667788888
Q ss_pred HHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 641 TMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 641 ~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
+.+..+.+......+-..++|.++.++. +.+.++...+..+|.++...+.
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~-~~~~~v~~~Aa~aL~Nl~~~~~ 390 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLS-KADFKTQKEAAWAITNYTSGGT 390 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHccCC
Confidence 8887664432222211246788888875 5678899999999999988754
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.64 E-value=0.0017 Score=67.34 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=120.5
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHhc--cC-CCCccchHHHHHHHhc-ccCchhhHhHHHHHHHHHHhhccccchhhhh
Q 046316 80 LLLSSLDDTHRKICTAISMAVASIAAY--DW-PEDWPDLLPFLLKLIT-DQSNMNGVHGGLRCLALLSADLDDAIVPKLV 155 (966)
Q Consensus 80 ~Ll~~L~~~~~kIr~~~a~~Is~Ia~~--D~-P~~WP~Ll~~L~~~l~-s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~ 155 (966)
.+++.+.+.+-+.|..++..+..++.. ++ +....++++.|...+. + .+...+.+|+.+|..+++.+.. .|.+.+
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd-~~~~V~~~a~~~l~~la~~l~~-~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD-SNVVLVAMAGKCLALLAKGLAK-RFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHGG-GGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHhh-hHHHHH
Confidence 366777889999999999999999875 32 3467889999999995 6 4888899999999999988765 577888
Q ss_pred hhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhH
Q 046316 156 PVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGV 235 (966)
Q Consensus 156 ~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~l 235 (966)
+.++|.++..+.+. +..+|..|...+.+++... .+...++.+...++. ..+.+
T Consensus 97 ~~ilp~ll~~l~d~---~~~vr~~a~~aL~~~~~~~-----------------~~~~ll~~l~~~l~~-------~~~~v 149 (242)
T 2qk2_A 97 SACVPSLLEKFKEK---KPNVVTALREAIDAIYAST-----------------SLEAQQESIVESLSN-------KNPSV 149 (242)
T ss_dssp HHHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTS-----------------CHHHHHHHHHHHTTC-------SCHHH
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHcC-------CChHH
Confidence 99999999999865 3678887777766655321 123445556666654 34789
Q ss_pred HHHHHHHHHHHHHhcc-h-hhHHhhHHHHHHHHH
Q 046316 236 KMEVLKCLNQFIQNFP-S-LAESEFLVVVRSLWQ 267 (966)
Q Consensus 236 k~~~~~~L~~l~~~f~-~-~~~~~~~~~~~~~~~ 267 (966)
|..++..+..+...++ + .+.++++.+++.+..
T Consensus 150 r~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~ 183 (242)
T 2qk2_A 150 KSETALFIARALTRTQPTALNKKLLKLLTTSLVK 183 (242)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 9999999999998884 4 456777766665443
No 55
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.61 E-value=0.00025 Score=74.01 Aligned_cols=216 Identities=15% Similarity=0.178 Sum_probs=145.1
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHH-----HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH--HHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLE-----HFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM--MGLF 533 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~-----~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l--~~il 533 (966)
++++-+|..|+|.+.++... +.+... ..++.+++.|.++ +..||..|+.+|.+++.... ..+..+ ...+
T Consensus 23 s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~i 98 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN--EQIQAVIDAGAL 98 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCH
Confidence 78889999999999887665 222222 3567777888744 57899999999999986421 111111 1356
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHhhcc-h-hhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHH-
Q 046316 534 SSLADLLHQARDETLHLVLETLQAAIKAGF-L-TASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQ- 609 (966)
Q Consensus 534 ~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~-~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~- 609 (966)
..|..++...+.+....++.+|..+..... . ..-.....+|.++++. ...++.++..+..+|..++.. ++....
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 176 (252)
T 4db8_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL--SSPNEQILQEALWALSNIASGGNEQIQAV 176 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG--GCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH--hCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 788888888777788888888877654433 2 1122234567777773 235778888899999999854 333322
Q ss_pred HHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHH-HHhHHHHHHHhccCchHHhhhhHHHHHHHH
Q 046316 610 LASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYD-VCFDAVIRIILQSEDHSEMQNATECLATFI 687 (966)
Q Consensus 610 l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~-~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i 687 (966)
....++|.+...+..+ .......++..|+.+....+..... +.+ .++|.+.+++. +.+..+...+..+|.++.
T Consensus 177 ~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~ll~-~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 177 IDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQA-VKEAGALEKLEQLQS-HENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHTTCHHHHHHGGGCS---SHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTHHHHHHTTTT-CSSSHHHHTHHHHHHTTC
T ss_pred HHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHhcCCHHHHHH-HHHCCcHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 3367889999999865 2356788899999998654432222 222 35788888774 567788999998888764
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.37 E-value=0.007 Score=64.07 Aligned_cols=241 Identities=15% Similarity=0.130 Sum_probs=145.7
Q ss_pred cchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccc-cH
Q 046316 366 YSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSV-RL 444 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~-~~ 444 (966)
..+|..|...|..+. +.. .++.+.+.+.. .++..|.++..++|.+... .. .+ .+
T Consensus 37 ~~vr~~A~~~L~~~~---~~~----~~~~L~~~l~d----------~~~~vR~~A~~aL~~l~~~----~~----~~~~l 91 (280)
T 1oyz_A 37 SLKRISSARVLQLRG---GQD----AVRLAIEFCSD----------KNYIRRDIGAFILGQIKIC----KK----CEDNV 91 (280)
T ss_dssp HHHHHHHHHHHHHHC---CHH----HHHHHHHHHTC----------SSHHHHHHHHHHHHHSCCC----TT----THHHH
T ss_pred HHHHHHHHHHHHccC---Cch----HHHHHHHHHcC----------CCHHHHHHHHHHHHHhccc----cc----cchHH
Confidence 456888888777664 222 33334444432 2467899999999877421 00 01 12
Q ss_pred HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCC
Q 046316 445 GELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGN 524 (966)
Q Consensus 445 ~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~ 524 (966)
.+++... .++ ++++.+|..|+|.+|++....+ .....+++.++..|. +.+..||..|+.++..+-..
T Consensus 92 ~~~L~~~---~~~---d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~-d~~~~vR~~a~~aL~~~~~~----- 158 (280)
T 1oyz_A 92 FNILNNM---ALN---DKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAF-DKSTNVRRATAFAISVINDK----- 158 (280)
T ss_dssp HHHHHHH---HHH---CSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTT-CSCHHHHHHHHHHHHTC--------
T ss_pred HHHHHHH---Hhc---CCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhh-CCCHHHHHHHHHHHHhcCCH-----
Confidence 1222221 123 6889999999999999975432 223456677777776 45788999999999876431
Q ss_pred ccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCC
Q 046316 525 FQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSP 604 (966)
Q Consensus 525 l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~ 604 (966)
..+..|..++.+.+.++...++.+|... +.+. ....|.+.+.. ...|+.+|..+...|..+.
T Consensus 159 ------~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~~~------~~~~~~L~~~l--~d~~~~vR~~A~~aL~~~~--- 220 (280)
T 1oyz_A 159 ------ATIPLLINLLKDPNGDVRNWAAFAININ-KYDN------SDIRDCFVEML--QDKNEEVRIEAIIGLSYRK--- 220 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHH-TCCC------HHHHHHHHHHT--TCSCHHHHHHHHHHHHHTT---
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHhh-ccCc------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhC---
Confidence 1234566677776667777788887554 2111 13445555542 2456788887777776553
Q ss_pred CcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHH
Q 046316 605 GCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLA 684 (966)
Q Consensus 605 ~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~ 684 (966)
.+..+|.+...+..+. ....++..++.+- .+ .++|.|...+....+.++.+.+...++
T Consensus 221 ------~~~~~~~L~~~l~d~~-----vr~~a~~aL~~i~---~~--------~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 221 ------DKRVLSVLCDELKKNT-----VYDDIIEAAGELG---DK--------TLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp ------CGGGHHHHHHHHTSSS-----CCHHHHHHHHHHC---CG--------GGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred ------CHhhHHHHHHHhcCcc-----HHHHHHHHHHhcC---ch--------hhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 1356777777776532 3445555555442 21 235777888776677788877776654
No 57
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.87 E-value=0.079 Score=61.65 Aligned_cols=353 Identities=12% Similarity=0.091 Sum_probs=191.1
Q ss_pred CCChhHHHHHHHHHHHhhhhcCh--h-H-HHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc---CCCCCccccHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISD--G-V-LEHFLSAAITTIAMDVPPPVKVGACRALSELLPK---ANKGNFQPQMMGLF 533 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~--~-~-~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~---~~~~~l~p~l~~il 533 (966)
+.++-++..|+|++..++..-+. . . ....++.++..|.++ +..||..|+.||.+++.. ..+..+... ..+
T Consensus 59 s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~--GaI 135 (584)
T 3l6x_A 59 FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNC--DGV 135 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHHHHHHHHT--THH
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHc--CCH
Confidence 67789999999999988754221 1 1 112467788888754 678999999999999853 122222221 245
Q ss_pred HHHHHHHhhc-ChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHH----------------hhcCChhHHHHHHHH
Q 046316 534 SSLADLLHQA-RDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWA----------------LHVSDPFISIDAIEV 596 (966)
Q Consensus 534 ~~L~~ll~~~-~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~----------------~~~~d~~~~~~~~~~ 596 (966)
..|..++... +.+....+..+|...-..+.....+...-+|.++++.. +...|+.+...+.+|
T Consensus 136 p~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~ 215 (584)
T 3l6x_A 136 PALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGC 215 (584)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHH
Confidence 6677777764 34555555555544433222111111223577766531 123356778888999
Q ss_pred HHHHHcCCCc-HHHHH--HhhhcchHhhhcCC---CCCCchhhHHHHHHHHHHhhcC-----------------------
Q 046316 597 LEAIKCSPGC-IHQLA--SRILPYVGPILNNP---QQQPDGLVAGSLDLLTMLLKSA----------------------- 647 (966)
Q Consensus 597 l~~l~~~~~~-~~~l~--~~~lP~l~~~l~~~---~~~~~~~~~~al~ll~~l~~~~----------------------- 647 (966)
|..|+...+. ...+. .-++|.+..++... .......++.++-.|..|..+.
T Consensus 216 L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~ 295 (584)
T 3l6x_A 216 LRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGT 295 (584)
T ss_dssp HHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------
T ss_pred HHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccc
Confidence 9999865432 33332 23455666665431 1112345666666665554331
Q ss_pred --ChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchH--HHHHHHHHhhcCCCCCCc
Q 046316 648 --STDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTM--RSLLDAASRLLNPDLESS 723 (966)
Q Consensus 648 --~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l--~~il~i~~~lL~~~~~~~ 723 (966)
+.++....-..+++.++.++..+....++++++.+|.++.......-. .....+ +..+..+-+||... ++.
T Consensus 296 ~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~----~~~~~v~~~~glp~Lv~LL~s~-~~~ 370 (584)
T 3l6x_A 296 SPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGR----YIRSALRQEKALSAIADLLTNE-HER 370 (584)
T ss_dssp CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHH----HHHHHHTSHHHHHHHHHGGGCS-CHH
T ss_pred cCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccH----HHHHHHHHcCcHHHHHHHHcCC-CHH
Confidence 111111001234678888887677889999999999999764311000 000011 23356666777433 222
Q ss_pred cccchHHHHHHHHHhCChhhhHhH-HHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcC
Q 046316 724 GSLFVGSYILQLILHLPSQMAQHI-RDLVAALVRRLQSAQ-------IAGLRSSLLLIFARLVHMSAPNVEWFINMLMTI 795 (966)
Q Consensus 724 ~~~~vg~Lv~~li~~~~~~l~~~l-~~iL~a~~~rL~~~~-------~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i 795 (966)
....++..+..+...-.. ...+ ...+..++..|...+ ...+..+.+..+.+++.. +++..-.+..
T Consensus 371 v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~---~~~~~~~I~~-- 443 (584)
T 3l6x_A 371 VVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE---NLEAAKKLRE-- 443 (584)
T ss_dssp HHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT---CHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC---CHHHHHHHHH--
Confidence 233344444444332222 1122 233333444443332 134555666677777766 7777666653
Q ss_pred CCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHHHc
Q 046316 796 PSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLS 836 (966)
Q Consensus 796 ~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~ 836 (966)
..++..++ .++.+-+ ++....|.+..+|+.+..
T Consensus 444 -----~g~I~~Lv-~LL~s~~--~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 444 -----TQGIEKLV-LINKSGN--RSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp -----TTHHHHHH-HHHTCSS--SCHHHHHHHHHHHHHHHT
T ss_pred -----CCChHHHH-HHHhCCC--CChHHHHHHHHHHHHHHc
Confidence 23555444 3444321 356778889999999985
No 58
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.83 E-value=0.0037 Score=62.96 Aligned_cols=189 Identities=17% Similarity=0.218 Sum_probs=124.2
Q ss_pred HHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH--HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-h-
Q 046316 489 FLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM--MGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-L- 564 (966)
Q Consensus 489 ~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l--~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~- 564 (966)
.+..++..|.+ .+..+|..|+.+|.+++.... ..+..+ ...+..|.+++...+.+....++.+|..+...++ .
T Consensus 13 ~~~~l~~LL~s-~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 13 ELPQMVQQLNS-PDQQELQSALRKLSQIASGGN--EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp CHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 34455555553 367899999999999885421 111111 1456778888887777788888888877764333 1
Q ss_pred hhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC-CCcHHH-HHHhhhcchHhhhcCCCCCCchhhHHHHHHHHH
Q 046316 565 TASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS-PGCIHQ-LASRILPYVGPILNNPQQQPDGLVAGSLDLLTM 642 (966)
Q Consensus 565 ~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~-~~~~~~-l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~ 642 (966)
..-.....+|.++++. ...|+.++..+..++..++.. ++.... +...++|.+...+..+ .......++..+..
T Consensus 90 ~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 90 QAVIDAGALPALVQLL--SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSN 164 (210)
T ss_dssp HHHHHTTCHHHHHHHT--TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH--cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 1112234568888773 234778888888899988843 333322 3456889999999864 23567888999999
Q ss_pred HhhcCChhHHHHHH-HHHhHHHHHHHhccCchHHhhhhHHHHHHHH
Q 046316 643 LLKSASTDVVKAAY-DVCFDAVIRIILQSEDHSEMQNATECLATFI 687 (966)
Q Consensus 643 l~~~~~~~l~~~~~-~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i 687 (966)
+....+... ..+. ..+++.|.+++. +.+..+...+..+|.++.
T Consensus 165 l~~~~~~~~-~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 165 IASGGNEQK-QAVKEAGALEKLEQLQS-HENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHTSCHHHH-HHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHC
T ss_pred HHcCCcHHH-HHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHh
Confidence 987654322 2222 235788888775 667889999999998874
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.79 E-value=0.028 Score=59.35 Aligned_cols=209 Identities=11% Similarity=0.074 Sum_probs=126.3
Q ss_pred cchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHH
Q 046316 366 YSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLG 445 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~ 445 (966)
..+|..|...|..+.. ....+..+++.+.+.+.. + .++..|.+++.++|.++.... .+ ..
T Consensus 68 ~~vR~~A~~aL~~l~~--~~~~~~~l~~~L~~~~~~--------d-~~~~vr~~a~~aL~~l~~~~~--------~~-~~ 127 (280)
T 1oyz_A 68 YIRRDIGAFILGQIKI--CKKCEDNVFNILNNMALN--------D-KSACVRATAIESTAQRCKKNP--------IY-SP 127 (280)
T ss_dssp HHHHHHHHHHHHHSCC--CTTTHHHHHHHHHHHHHH--------C-SCHHHHHHHHHHHHHHHHHCG--------GG-HH
T ss_pred HHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHhc--------C-CCHHHHHHHHHHHHHHhccCC--------cc-cH
Confidence 4578888887766542 123344555554433222 2 257899999999998864210 00 11
Q ss_pred HHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCc
Q 046316 446 ELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNF 525 (966)
Q Consensus 446 ~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l 525 (966)
..+. .+...++ ++++.+|..|++.+|++... ..++.++..|. +.+..||..|+.++..+-..
T Consensus 128 ~~~~-~L~~~l~---d~~~~vR~~a~~aL~~~~~~-------~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~------ 189 (280)
T 1oyz_A 128 KIVE-QSQITAF---DKSTNVRRATAFAISVINDK-------ATIPLLINLLK-DPNGDVRNWAAFAININKYD------ 189 (280)
T ss_dssp HHHH-HHHHHTT---CSCHHHHHHHHHHHHTC----------CCHHHHHHHHT-CSSHHHHHHHHHHHHHHTCC------
T ss_pred HHHH-HHHHHhh---CCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHc-CCCHHHHHHHHHHHHhhccC------
Confidence 1122 2223344 78999999999999987542 23455556665 44678999999999876321
Q ss_pred cccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCC
Q 046316 526 QPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPG 605 (966)
Q Consensus 526 ~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~ 605 (966)
-+.++..|..++.+.+.++...++.+|...-. ...+|.+++.+ .|+.++..+...+..+..
T Consensus 190 ---~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---------~~~~~~L~~~l----~d~~vr~~a~~aL~~i~~--- 250 (280)
T 1oyz_A 190 ---NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---------KRVLSVLCDEL----KKNTVYDDIIEAAGELGD--- 250 (280)
T ss_dssp ---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---------GGGHHHHHHHH----TSSSCCHHHHHHHHHHCC---
T ss_pred ---cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---------HhhHHHHHHHh----cCccHHHHHHHHHHhcCc---
Confidence 13556777778877776777777777755421 24557776663 334477767666665532
Q ss_pred cHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHH
Q 046316 606 CIHQLASRILPYVGPILNNPQQQPDGLVAGSLDL 639 (966)
Q Consensus 606 ~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~l 639 (966)
..++|.+...++.+. ...++..+++.
T Consensus 251 ------~~~~~~L~~~l~~~~--~~~~~~~~~~~ 276 (280)
T 1oyz_A 251 ------KTLLPVLDTMLYKFD--DNEIITSAIDK 276 (280)
T ss_dssp ------GGGHHHHHHHHTTSS--CCHHHHHHHHH
T ss_pred ------hhhhHHHHHHHhcCC--CcHHHHHHHHH
Confidence 367888888887542 23445444443
No 60
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.78 E-value=0.045 Score=63.56 Aligned_cols=257 Identities=13% Similarity=0.099 Sum_probs=160.3
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHH-----
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLE----- 487 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~----- 487 (966)
+...|+.|..+++.++..-. .... .+.....+...+ ..+. .++++.+|..|++++.+++.. ++...
T Consensus 30 ~~~v~~~A~~~L~~l~~~~~-~~~~---~~~~~~~i~~Lv-~~L~--~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~ 100 (529)
T 1jdh_A 30 DQVVVNKAAVMVHQLSKKEA-SRHA---IMRSPQMVSAIV-RTMQ--NTNDVETARCTAGTLHNLSHH--REGLLAIFKS 100 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSHH-HHHH---HHTCHHHHHHHH-HHHH--HCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCc-cHHH---HHhCcchHHHHH-HHHh--cCCCHHHHHHHHHHHHHHHcC--chhHHHHHHc
Confidence 46789999999998875321 1100 010011222222 2222 135788999999999998654 12111
Q ss_pred HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH--HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-h
Q 046316 488 HFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM--MGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-L 564 (966)
Q Consensus 488 ~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l--~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~ 564 (966)
..++.++..|.++ +..+|..|+.+|.+++..... .+..+ ...+..|.+++...+.+....+..++......++ .
T Consensus 101 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 101 GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp THHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTT--HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcc--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 2466777777643 577999999999999876311 12221 3456778888877666666666666665443222 1
Q ss_pred hhc-ccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHH-HHhhhcchHhhhcCCCCCCchhhHHHHHHHHH
Q 046316 565 TAS-MEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQL-ASRILPYVGPILNNPQQQPDGLVAGSLDLLTM 642 (966)
Q Consensus 565 ~~~-~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l-~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~ 642 (966)
... .....+|.++++ .+...+......+..++..++..++.-..+ ....+|.+...+..+ .......++..+..
T Consensus 178 ~~~i~~~~~i~~L~~l-l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~---~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 178 KLIILASGGPQALVNI-MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRN 253 (529)
T ss_dssp HHHHHHTTHHHHHHHH-HHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS---CHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHH-HHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC---ChHHHHHHHHHHHH
Confidence 111 112345777777 444555566667778888888766644443 346788888888654 23567788888888
Q ss_pred HhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhc
Q 046316 643 LLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISG 689 (966)
Q Consensus 643 l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~ 689 (966)
+.+..+... ....++|.+++++ .+.+.++...++.+|.++...
T Consensus 254 l~~~~~~~~---~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 254 LSDAATKQE---GMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHTTCTTCS---CCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTT
T ss_pred HhcCChhhH---HHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcC
Confidence 887654311 1234578888887 567889999999999998664
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.77 E-value=0.0067 Score=74.45 Aligned_cols=298 Identities=14% Similarity=0.137 Sum_probs=191.7
Q ss_pred HHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhh
Q 046316 418 EATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTI 497 (966)
Q Consensus 418 EaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L 497 (966)
|+|+.+++.++.... . ...+++|+...+...+....+-..-+|..|-..+-.+...++++....+++.+++.|
T Consensus 70 ~~a~~~~~~~~~~~~------~-~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~ 142 (986)
T 2iw3_A 70 ANAMQAVAHIANQSN------L-SPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAI 142 (986)
T ss_dssp HHHHHHHHHHTCTTT------C-CTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC------C-CCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 999999999875321 0 012466665444333332236667899999999999999999877799999999999
Q ss_pred cCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHH
Q 046316 498 AMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLIL 577 (966)
Q Consensus 498 ~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l 577 (966)
.+.+.-..|+.|...+..+.+.. ++.+.-.++.++-.+...+-+...|+.....+++..+++.-. ...++ ..+|.++
T Consensus 143 ~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d~~-~~~~~~~ 219 (986)
T 2iw3_A 143 VETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKDIE-RFIPSLI 219 (986)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTTTG-GGHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccchh-hhHHHHH
Confidence 75444578999999999999875 466788889999999999988888888888888877776411 00111 1235554
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHcC---CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChh-HHH
Q 046316 578 NIWALHVSDPFISIDAIEVLEAIKCS---PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTD-VVK 653 (966)
Q Consensus 578 ~l~~~~~~d~~~~~~~~~~l~~l~~~---~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~-l~~ 653 (966)
+ +..+| ..+-+|+..|... .+.-.+....+.|.+...|....+ ..-.-+.=++..+.|-+..+ -..
T Consensus 220 ~----~~~~p---~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~---~~~r~~~~~~~n~~~lv~~~~~~~ 289 (986)
T 2iw3_A 220 Q----CIADP---TEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERET---GIKRKSAVIIDNMCKLVEDPQVIA 289 (986)
T ss_dssp H----HHHCT---THHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSH---HHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred H----HhcCh---hhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcc---hhheeeEEEEcchhhhcCCHHHHh
Confidence 4 44555 2367888888743 556677888999999999975432 22234444555555555422 222
Q ss_pred HHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCcc----ceeeeccCCcchHHHHHHHHHhhcCCCCC----Cccc
Q 046316 654 AAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQ----LMLVWGGDSGFTMRSLLDAASRLLNPDLE----SSGS 725 (966)
Q Consensus 654 ~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~----~~~~~~~~~~~~l~~il~i~~~lL~~~~~----~~~~ 725 (966)
.+...++|.+-+....-.|+++..-+..+++.+.+.+.. .+.. . ....-...++..+...+..... +...
T Consensus 290 ~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (986)
T 2iw3_A 290 PFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPE-L-SHAGDVSTTLQVVNELLKDETVAPRFKIVV 367 (986)
T ss_dssp HHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCC-C-CCTTCHHHHHHHHHHHTTTSCCCGGGHHHH
T ss_pred hhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcccccccccc-c-cccchHHHHHHHHHHHhcccccccchhhHH
Confidence 234445666666665667899999999999888776442 1110 0 0012244566666666643211 1122
Q ss_pred cchHHHHHHHHH
Q 046316 726 LFVGSYILQLIL 737 (966)
Q Consensus 726 ~~vg~Lv~~li~ 737 (966)
.+++.++..++.
T Consensus 368 ~y~~~~~~~~~~ 379 (986)
T 2iw3_A 368 EYIAAIGADLID 379 (986)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 355555555553
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.67 E-value=0.0056 Score=61.55 Aligned_cols=176 Identities=16% Similarity=0.118 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHH-----
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLE----- 487 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~----- 487 (966)
++..++.++.+++.++..-.+... .+--...+. .+...+. ++++-+|..|+|+++.++..-+ +...
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~----~i~~~g~i~-~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~ 95 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQ----AVIDAGALP-ALVQLLS---SPNEQILQEALWALSNIASGGN-EQIQAVIDA 95 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHH----HHHHTTHHH-HHHHHTT---CSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHH----HHHHcCCHH-HHHHHHc---CCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHC
Confidence 478899999999998742111110 000001122 2223444 6789999999999999975421 2222
Q ss_pred HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCcccc-HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hh
Q 046316 488 HFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQ-MMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LT 565 (966)
Q Consensus 488 ~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~-l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~ 565 (966)
..++.++..|.++ +..||..|+.+|.+++.... +..+.. -...+..|.+++...+.+....++.+|......++ ..
T Consensus 96 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 96 GALPALVQLLSSP-NEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp TCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 2467777877643 67899999999999986421 111111 12356788888887777888888888888876533 21
Q ss_pred hc-ccccchHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046316 566 AS-MEPMISPLILNIWALHVSDPFISIDAIEVLEAIK 601 (966)
Q Consensus 566 ~~-~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~ 601 (966)
.. .....+|.+.++ . ...++.++..+..+|..|+
T Consensus 174 ~~~~~~g~i~~L~~l-l-~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 174 QAVKEAGALEKLEQL-Q-SHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTHHHHHHHG-G-GCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHH-H-hCCCHHHHHHHHHHHHHHh
Confidence 11 122345666666 2 2467788888888887775
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.63 E-value=0.005 Score=63.95 Aligned_cols=193 Identities=18% Similarity=0.269 Sum_probs=127.1
Q ss_pred HHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhc
Q 046316 490 LSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM-MGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTAS 567 (966)
Q Consensus 490 l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~ 567 (966)
++..+..|.++ +..+|..|+.+|.+++... .......+ ..++..|.+++...+.+....++.+|......++ ....
T Consensus 14 ~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 14 LPQMTQQLNSD-DMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp HHHHHHHHHSS-CSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 55556666644 6789999999998766531 11111111 1356788888887777788888888877765333 2211
Q ss_pred -ccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcH-HH-HHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHh
Q 046316 568 -MEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCI-HQ-LASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLL 644 (966)
Q Consensus 568 -~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~-~~-l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~ 644 (966)
.....+|.++++. +. .++.++..+..+|..++..+... .. .....+|.+...+..+ .......++..+..+.
T Consensus 92 i~~~g~i~~L~~lL-~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 92 VIDAGALPALVQLL-SS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIA 166 (252)
T ss_dssp HHHTTHHHHHHHGG-GC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHH-cC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHH
Confidence 1223567777773 22 57788888889999888654432 33 3445889999999764 2356788899999988
Q ss_pred hcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcC
Q 046316 645 KSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGG 690 (966)
Q Consensus 645 ~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~ 690 (966)
...+......+-..++|.+++++. +.+..+...++.+|.++....
T Consensus 167 ~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 167 SGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSC
T ss_pred cCChHHHHHHHHCCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCC
Confidence 765432222111346788888875 557889999999999998643
No 64
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.57 E-value=0.0055 Score=63.36 Aligned_cols=192 Identities=13% Similarity=0.161 Sum_probs=128.5
Q ss_pred HHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhc
Q 046316 490 LSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM-MGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTAS 567 (966)
Q Consensus 490 l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~ 567 (966)
++.+++.|.++ +..+|..|+.+|.+++.... +.....+ ..++..|.+++...+.+....++.+|......++ ....
T Consensus 4 i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTST-DSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 45667777644 57799999999999986531 1111111 1467788888888777888888888887765433 1111
Q ss_pred -ccccchHHHHHHHHhhcCChhHHHHHHHHHHHHH-cCCCcHHHH-HHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHh
Q 046316 568 -MEPMISPLILNIWALHVSDPFISIDAIEVLEAIK-CSPGCIHQL-ASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLL 644 (966)
Q Consensus 568 -~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~-~~~~~~~~l-~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~ 644 (966)
.....+|.++++. + ..++.++..+..+|..++ ..+.....+ ....+|.+...+..+. ......++..+..+.
T Consensus 82 ~~~~~~i~~l~~ll-~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 82 IVDAGGVEVLVKLL-T-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD---SEVQKEAARALANIA 156 (252)
T ss_dssp HHHTTHHHHHHHHT-T-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHH-c-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHH
Confidence 1224567777773 2 456788888999999998 444433333 3457899999888643 356788899999988
Q ss_pred hcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhc
Q 046316 645 KSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISG 689 (966)
Q Consensus 645 ~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~ 689 (966)
...+......+-..++|.+++++. +.+..+...++.+|.++...
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASG 200 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcC
Confidence 764422222111335788888875 66788999999999998764
No 65
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.53 E-value=0.58 Score=51.81 Aligned_cols=291 Identities=13% Similarity=0.130 Sum_probs=170.5
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLL 540 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll 540 (966)
...+-.+.=|..+|+||...+| ++..+.+.+.+.... |.+.-||+.|+++|..||.+ .+++.+...|.+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcE-Ded~~IR~qaik~Lp~~ck~-------~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCE-DEDVSIRRQAIKELPQFATG-------ENLPRVADILTQLL 109 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHT-CSSHHHHHHHHHHGGGGCCT-------TCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHh-cccHHHHHHHHHhhHHHhhh-------hhhhhHHHHHHHHH
Confidence 3568888889999999999985 567788888888754 55788999999999999965 45888889999999
Q ss_pred hhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHH-cCC-CcH-HHHHHhhhcc
Q 046316 541 HQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIK-CSP-GCI-HQLASRILPY 617 (966)
Q Consensus 541 ~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~-~~~-~~~-~~l~~~~lP~ 617 (966)
+..+...+..|=.+|...++.|+.. .+..+.-++ .+ .|..+|..++..+..=. ..+ +.+ ...++.+.-.
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~-----tl~~lf~~i-~~--~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ 181 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKG-----TLGGLFSQI-LQ--GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHH-HH--SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHhcChHH-----HHHHHHHHH-cc--cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence 9777778888889999999988621 243444444 32 47778866655543322 332 222 4456666777
Q ss_pred hHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHh-----ccCchHHhhhhHHHHHHHHhcCcc
Q 046316 618 VGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIIL-----QSEDHSEMQNATECLATFISGGRQ 692 (966)
Q Consensus 618 l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~-----~s~d~~~lq~~~~~l~~~i~~~~~ 692 (966)
+.++++.- + .......+++|..+--... . +. ...+.+.+....- ...|.+.+...+.|++.=+-.
T Consensus 182 ikK~L~DV-T--~~EF~L~m~lL~~lkl~~t--~-~g-~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~--- 251 (507)
T 3u0r_A 182 SKKVLEDV-T--GEEFVLFMKILSGLKSLQT--V-SG-RQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPL--- 251 (507)
T ss_dssp HHHHTTSC-C--HHHHHHHHHHHHTSGGGSS--H-HH-HHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGG---
T ss_pred HHHHhccc-c--HHHHHHHHHHHHhcccccC--c-hH-HHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHH---
Confidence 77777422 1 1222334444433221111 1 11 1122233333221 234666776666666654332
Q ss_pred ceeeeccCCcchHHHHHHHHH-hhc---CCCCC-----CccccchHHHHHHHHHhCCh--hhhHhHHHHHHHHHHHHHH-
Q 046316 693 LMLVWGGDSGFTMRSLLDAAS-RLL---NPDLE-----SSGSLFVGSYILQLILHLPS--QMAQHIRDLVAALVRRLQS- 760 (966)
Q Consensus 693 ~~~~~~~~~~~~l~~il~i~~-~lL---~~~~~-----~~~~~~vg~Lv~~li~~~~~--~l~~~l~~iL~a~~~rL~~- 760 (966)
|.. +.+. ..++..+. ++| + .+. +......-+++..+...++. .....++.|...+...+=.
T Consensus 252 -FS~----~v~S-tkFv~y~~~kIlP~l~-~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~ 324 (507)
T 3u0r_A 252 -FSK----NVHS-TRFVTYFCEQVLPNLG-TLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLP 324 (507)
T ss_dssp -CBT----TBCC-HHHHHHHHHHTGGGTT-CCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCC
T ss_pred -hcc----CCCh-HHHHHHHHHhhccchh-hccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCC
Confidence 211 1111 12333332 322 2 121 12455677777777777772 2344555555444432211
Q ss_pred -h----------hh----HHHHHHHHHHHHHHHhhcCCCHHHH
Q 046316 761 -A----------QI----AGLRSSLLLIFARLVHMSAPNVEWF 788 (966)
Q Consensus 761 -~----------~~----~~~~~~li~vfa~l~~~~~~~~~~~ 788 (966)
. ++ -+.+..|+..|.+|... .|+.+
T Consensus 325 p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k---~P~~l 364 (507)
T 3u0r_A 325 PEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRK---LPDFL 364 (507)
T ss_dssp C--------------CCCHHHHHHHHHHHHHHHTT---CTHHH
T ss_pred cccccccccccccCcccchhHHHHHHHHHHHHhhh---Chhhh
Confidence 1 11 35668888899999988 77765
No 66
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.46 E-value=0.046 Score=62.41 Aligned_cols=352 Identities=12% Similarity=0.057 Sum_probs=186.7
Q ss_pred CCChhHHHHHHHHHHHhhhhcCh---hH-HHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC--CCCCccccHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISD---GV-LEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA--NKGNFQPQMMGLFS 534 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~---~~-~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~--~~~~l~p~l~~il~ 534 (966)
++.+-+|..|+|++.+++..-+. .. ....++.++..|.++ +..++..|+.||.++.... .+..+.. ...+.
T Consensus 13 s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~i~~--~G~i~ 89 (457)
T 1xm9_A 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRR--QNGIR 89 (457)
T ss_dssp SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHH--TTCHH
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHH
Confidence 56788999999999999854321 11 123467788888743 6678999999999998641 1111111 12356
Q ss_pred HHHHHHh-hcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHh-------hc-------CChhHHHHHHHHHHH
Q 046316 535 SLADLLH-QARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWAL-------HV-------SDPFISIDAIEVLEA 599 (966)
Q Consensus 535 ~L~~ll~-~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~-------~~-------~d~~~~~~~~~~l~~ 599 (966)
.|.+++. ..+.+....+..+|..+...+.....+....+|.++++... .. .++.+...+..+|..
T Consensus 90 ~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~n 169 (457)
T 1xm9_A 90 EAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRN 169 (457)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHH
Confidence 6777777 44557777777788777655331111111455888887521 11 244555577888888
Q ss_pred HHcCCCcHHHHHH--hhhcchHhhhcCC---CCCCchhhHHHHHHHHHHhhcC---------------------------
Q 046316 600 IKCSPGCIHQLAS--RILPYVGPILNNP---QQQPDGLVAGSLDLLTMLLKSA--------------------------- 647 (966)
Q Consensus 600 l~~~~~~~~~l~~--~~lP~l~~~l~~~---~~~~~~~~~~al~ll~~l~~~~--------------------------- 647 (966)
|+..|+....+.+ -++|.+...+... .......++.++-++..+....
T Consensus 170 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (457)
T 1xm9_A 170 LSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC 249 (457)
T ss_dssp HTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------------
T ss_pred HccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccch
Confidence 8866555455553 5788887777631 0011234455554444432110
Q ss_pred -----------------------ChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccc---eeeeccCC
Q 046316 648 -----------------------STDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQL---MLVWGGDS 701 (966)
Q Consensus 648 -----------------------~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~---~~~~~~~~ 701 (966)
+...-..+-..+.+.++.++..+.++.+...+..+|.++.....+. +.+-.-..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~ 329 (457)
T 1xm9_A 250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK 329 (457)
T ss_dssp ----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTT
T ss_pred hhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHH
Confidence 0000000112346778888877777889999999999987653221 10000000
Q ss_pred cchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhH-HHHHHHHHHHHHHhh-----hHHHHHHHHHHHH
Q 046316 702 GFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHI-RDLVAALVRRLQSAQ-----IAGLRSSLLLIFA 775 (966)
Q Consensus 702 ~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l-~~iL~a~~~rL~~~~-----~~~~~~~li~vfa 775 (966)
..++ ..+-+||... ++.....++.++..+... .+....+ ...+..++..|.... ...++...+..++
T Consensus 330 ~~~l----~~Lv~LL~~~-~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ 402 (457)
T 1xm9_A 330 EKGL----PQIARLLQSG-NSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402 (457)
T ss_dssp SCCH----HHHHHHTTCS-CHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHH
T ss_pred cCCc----hHHHHHHhCC-CHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHH
Confidence 1223 3444556433 222233444444444332 2222222 234455555555432 2345556677777
Q ss_pred HHHhhcCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHHHc
Q 046316 776 RLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLS 836 (966)
Q Consensus 776 ~l~~~~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~ 836 (966)
.++.. +++....+.. ..++..+...--.. +...-+|.+...|..++.
T Consensus 403 ni~~~---~~~~~~~i~~-------~g~l~~L~~L~~~~----~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 403 NLMAS---QPQLAKQYFS-------SSMLNNIINLCRSS----ASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHTT---CTHHHHHHCC-------HHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTSS
T ss_pred HHHhc---CHHHHHHHHH-------cCCHHHHHHHHcCC----CcHHHHHHHHHHHHHHHc
Confidence 77765 5665444441 23555555433211 122234445555555553
No 67
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.42 E-value=0.05 Score=59.58 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=140.1
Q ss_pred CChhHHHHHHHHHHHhhhhcC--hhHH---HHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC---CCCCccccHHHHH
Q 046316 462 QYPFLYARIFASVARFSSAIS--DGVL---EHFLSAAITTIAMDVPPPVKVGACRALSELLPKA---NKGNFQPQMMGLF 533 (966)
Q Consensus 462 ~~~~Lr~Ra~~~l~~f~~~~~--~~~~---~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~---~~~~l~p~l~~il 533 (966)
.++-+|..|+|++...+..-+ .... ..+++.++..|.++ +..||..|+.||.++.... .+..+.. ...+
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~--~G~I 172 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSV 172 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH--TTHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH--CCCH
Confidence 357799999999999985432 1111 23577888888743 6789999999999987531 1112211 1245
Q ss_pred HHHHHHHhh-cChhhHHHHHHHHHHHHhhc-chhhcc--cccchHHHHHHHHhhcCCh---hHHHHHHHHHHHHHc----
Q 046316 534 SSLADLLHQ-ARDETLHLVLETLQAAIKAG-FLTASM--EPMISPLILNIWALHVSDP---FISIDAIEVLEAIKC---- 602 (966)
Q Consensus 534 ~~L~~ll~~-~~~d~l~~~le~l~~~i~~~-~~~~~~--~~~l~p~~l~l~~~~~~d~---~~~~~~~~~l~~l~~---- 602 (966)
..|.+++.. .+.+.+..++.+|..+.... .....+ ....+|.++++. ++.++. .++..+..+|..|+.
T Consensus 173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL-~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 251 (354)
T 3nmw_A 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL-TYRSQTNTLAIIESGGGILRNVSSLIAT 251 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHT-TCCCSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHh-ccCCCcccHHHHHHHHHHHHHHHhhccC
Confidence 666665444 34466666666666655422 111111 234568888883 333332 366677888888875
Q ss_pred CCCcHHHHH-HhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHH-HHHhHHHHHHHhccCchHHhhhhH
Q 046316 603 SPGCIHQLA-SRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAY-DVCFDAVIRIILQSEDHSEMQNAT 680 (966)
Q Consensus 603 ~~~~~~~l~-~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~-~~~fp~l~~~l~~s~d~~~lq~~~ 680 (966)
.++.-..+. .-.+|.+...+.... ......|+-.|..+..+.+. .-..+. .-++|+|++++ ++.+..+...+.
T Consensus 252 ~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~i~~Lv~LL-~s~~~~i~~~A~ 326 (354)
T 3nmw_A 252 NEDHRQILRENNCLQTLLQHLKSHS---LTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLI-HSKHKMIAMGSA 326 (354)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSCHH-HHHHHHHTTHHHHHHTTT-TCSSHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCC---hHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHHH-hCCCHHHHHHHH
Confidence 343322222 347899999987542 34677888888888754332 222222 23578899876 466778899999
Q ss_pred HHHHHHHhcCccce
Q 046316 681 ECLATFISGGRQLM 694 (966)
Q Consensus 681 ~~l~~~i~~~~~~~ 694 (966)
.+|.++....+++.
T Consensus 327 ~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 327 AALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHTTCCGGG
T ss_pred HHHHHHHcCCHHHH
Confidence 99999999866553
No 68
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.38 E-value=0.026 Score=56.75 Aligned_cols=176 Identities=15% Similarity=0.142 Sum_probs=109.0
Q ss_pred ccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccH
Q 046316 365 TYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRL 444 (966)
Q Consensus 365 ~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~ 444 (966)
...+|..|...|..+.. ...++.+. +.+. +. ++..|..++.++|.+... -.+
T Consensus 32 ~~~vR~~A~~~L~~~~~---~~~~~~L~----~~l~---------~~-~~~vr~~a~~aL~~~~~~-----------~~~ 83 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD---ERAVEPLI----KALK---------DE-DAWVRRAAADALGQIGDE-----------RAV 83 (211)
T ss_dssp SHHHHHHHHHHHHHHCC---GGGHHHHH----HHTT---------CS-CHHHHHHHHHHHHHHCCG-----------GGH
T ss_pred CHHHHHHHHHHHHHhCC---ccHHHHHH----HHHc---------CC-CHHHHHHHHHHHHhhCCH-----------HHH
Confidence 45678888777766532 23344433 3332 22 478899999999876421 012
Q ss_pred HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCC
Q 046316 445 GELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGN 524 (966)
Q Consensus 445 ~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~ 524 (966)
.. +.. .++ ++++.+|..|++.++++... ..++.++..|. +.+..||..|+.+|..+-..
T Consensus 84 ~~-L~~----~l~---~~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~----- 142 (211)
T 3ltm_A 84 EP-LIK----ALK---DEDGWVRQSAAVALGQIGDE-------RAVEPLIKALK-DEDWFVRIAAAFALGEIGDE----- 142 (211)
T ss_dssp HH-HHH----HTT---CSSHHHHHHHHHHHHHHCCG-------GGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCG-----
T ss_pred HH-HHH----HHc---CCCHHHHHHHHHHHHHhCcH-------HHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCH-----
Confidence 22 222 344 78899999999999998542 23455556664 55778999999999987421
Q ss_pred ccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCC
Q 046316 525 FQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSP 604 (966)
Q Consensus 525 l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~ 604 (966)
..+..|..++++.+..+...++++|...-. ....+.+.++.. ..++.++..+.+.|..+...+
T Consensus 143 ------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 143 ------RAVEPLIKALKDEDGWVRQSAADALGEIGG---------ERVRAAMEKLAE--TGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------HHHHHHHHHHHH--HCCHHHHHHHHHHHHC-----
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------hhHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCC
Confidence 233556667766666777777787766522 134566666632 467889998888888776554
Q ss_pred Cc
Q 046316 605 GC 606 (966)
Q Consensus 605 ~~ 606 (966)
..
T Consensus 206 ~~ 207 (211)
T 3ltm_A 206 HH 207 (211)
T ss_dssp --
T ss_pred CC
Confidence 43
No 69
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.26 E-value=0.041 Score=54.70 Aligned_cols=172 Identities=15% Similarity=0.152 Sum_probs=109.5
Q ss_pred CccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCcccc
Q 046316 364 STYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVR 443 (966)
Q Consensus 364 ~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~ 443 (966)
....+|..|...|..+.. ...++.+. +.+. +. ++..|..++.++|.+... -.
T Consensus 26 ~~~~vr~~A~~~L~~~~~---~~~~~~L~----~~l~---------~~-~~~vr~~a~~~L~~~~~~-----------~~ 77 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGD---ERAVEPLI----KALK---------DE-DAWVRRAAADALGQIGDE-----------RA 77 (201)
T ss_dssp SCHHHHHHHHHHHHHHCC---GGGHHHHH----HHTT---------CS-SHHHHHHHHHHHHHHCCG-----------GG
T ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHH----HHHc---------CC-CHHHHHHHHHHHHhhCCH-----------HH
Confidence 446788888888776532 23343333 3332 22 467888898888876321 01
Q ss_pred HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCC
Q 046316 444 LGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKG 523 (966)
Q Consensus 444 ~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~ 523 (966)
+.. +.. .++ ++++.+|..|+|.++++... ..++.++..|. +.+..||..|+.++..+-.
T Consensus 78 ~~~-L~~----~l~---d~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 78 VEP-LIK----ALK---DEDGWVRQSAAVALGQIGDE-------RAVEPLIKALK-DEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp HHH-HHH----HTT---CSSHHHHHHHHHHHHHHCCG-------GGHHHHHHHTT-CSSHHHHHHHHHHHHHHTC-----
T ss_pred HHH-HHH----HHc---CCCHHHHHHHHHHHHHhCcH-------HHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC-----
Confidence 222 222 344 78899999999999998542 23455556665 4477899999999998742
Q ss_pred CccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046316 524 NFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIK 601 (966)
Q Consensus 524 ~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~ 601 (966)
+..+..|..++.+.+..+...++++|...-. ....+.+.++. ...++.++..+.+.|..+.
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------~~~~~~L~~~l--~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------ERVRAAMEKLA--ETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------HHHHHHHHHHH--HHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------hhHHHHHHHHH--hCCCHHHHHHHHHHHHHHH
Confidence 1233556677776666777777888766522 13446666663 3367888888887776653
No 70
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.25 E-value=0.035 Score=59.09 Aligned_cols=140 Identities=13% Similarity=0.055 Sum_probs=93.0
Q ss_pred CCChhHHHHHHHHHHHhhhhcCh--hHH--HHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH-HHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISD--GVL--EHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM-MGLFSS 535 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~--~~~--~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l-~~il~~ 535 (966)
++++-+|..|+|++|..+..-+. ... ...++.++..|.++.+..||..|+.||.+++...+ ...+.+. ...+..
T Consensus 93 s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~-~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 93 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE-AGLLQFLRLDGFSV 171 (296)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc-HHHHHHHHCCCHHH
Confidence 78999999999999999865321 111 13566777777654456799999999999987531 1111221 135667
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcc-cccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC
Q 046316 536 LADLLHQARDETLHLVLETLQAAIKAGF-LTASM-EPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS 603 (966)
Q Consensus 536 L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~-~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~ 603 (966)
|..++...+.++...++-+|..+...++ ....+ ....+|.++.+ . ...|+.++..+..++..|+..
T Consensus 172 L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L-L-~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL-V-RTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH-H-TSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH-H-cCCChhHHHHHHHHHHHHHhC
Confidence 7788887777788888888877765443 22211 23456777777 3 234777888888888887743
No 71
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.14 E-value=0.19 Score=61.65 Aligned_cols=209 Identities=13% Similarity=0.137 Sum_probs=140.4
Q ss_pred cchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHH
Q 046316 366 YSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLG 445 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~ 445 (966)
-.+|.+|..-+..+...++...+..+++.+...+.. ...|+.|.|||-+++.+++... ..+.
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~kw~~k~~~l~~~~~~~~~~~---------~~~~ 170 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVE---------TNKWQEKIAILAAFSAMVDAAK---------DQVA 170 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHSH---------HHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc---------ccchHHHHHHHHHHHHHHHHhH---------HHHH
Confidence 578999999999999999998888899988887754 1249999999999999987431 1233
Q ss_pred HHHHHHHhhhhc-CCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC-CCC
Q 046316 446 ELLEQMITEDIG-TGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKA-NKG 523 (966)
Q Consensus 446 ~~l~~~i~~~l~-~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~-~~~ 523 (966)
..+...| |.+. ...+..+=++..|.-++-+++..+.-.-..++++.+++++..+.. +- .|++.+.... ..+
T Consensus 171 ~~~~~~~-p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~----~~--~~~~~l~~~tfv~~ 243 (986)
T 2iw3_A 171 LRMPELI-PVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE----VP--ETVHLLGATTFVAE 243 (986)
T ss_dssp HHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH----HH--HHHHHHTTCCCCSC
T ss_pred Hhccchh-cchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh----hH--HHHHHhhcCeeEee
Confidence 4444433 2332 124788999999999999999987654567889999999974321 11 2233333322 233
Q ss_pred CccccHHHHHHHHHHHHhhcChhhH---HHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHH
Q 046316 524 NFQPQMMGLFSSLADLLHQARDETL---HLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEA 599 (966)
Q Consensus 524 ~l~p~l~~il~~L~~ll~~~~~d~l---~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~ 599 (966)
+-.|-+.-++-.|..-+++-+.... ..+++.++..+. || .++.|.+.++|-+-+. ....+||..|..+..++..
T Consensus 244 v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~-~~~~~~~f~~~l~p~~~~~-~~~~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 244 VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE-DPQVIAPFLGKLLPGLKSN-FATIADPEAREVTLRALKT 321 (986)
T ss_dssp CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC-CHHHHHHHHTTTHHHHHHH-TTTCCSHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC-CHHHHhhhhhhhhhHHHHH-hhccCCHHHHHHHHHHHHH
Confidence 4445554444444444454443332 334455544443 45 6667778888887777 6778999999888777777
Q ss_pred HH
Q 046316 600 IK 601 (966)
Q Consensus 600 l~ 601 (966)
|.
T Consensus 322 l~ 323 (986)
T 2iw3_A 322 LR 323 (986)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.95 E-value=0.67 Score=44.20 Aligned_cols=202 Identities=7% Similarity=0.076 Sum_probs=121.7
Q ss_pred cCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCcc
Q 046316 362 DESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTS 441 (966)
Q Consensus 362 ~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~ 441 (966)
|||-||+|.-|..++.++++.+++- ..++..-+.-++..++ .....-+.-.++|.++..- |
T Consensus 42 DDDlwtV~kNAl~vi~~i~~~~~el-~epl~~kL~vm~~ksE---------aIpltqeIa~a~G~la~i~---------P 102 (253)
T 2db0_A 42 DDDLWTVVKNAISIIMVIAKTREDL-YEPMLKKLFSLLKKSE---------AIPLTQEIAKAFGQMAKEK---------P 102 (253)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHHHHCC---------SHHHHHHHHHHHHHHHHHC---------H
T ss_pred ccHHHHHHHhHHHHHHHHHHHhHHH-HHHHHHHHHHHHhhcc---------cCchHHHHHHHHhHHHHhC---------H
Confidence 4568999999999999999998754 4555555555555421 1223333456788887531 1
Q ss_pred ccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCC
Q 046316 442 VRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKAN 521 (966)
Q Consensus 442 ~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~ 521 (966)
--+.+ +..++...+. -..|-.|--.-.++++.... +|+....++..+...+.+. +..=|..|..-+..+-+. .
T Consensus 103 e~v~~-vVp~lfanyr---igd~kikIn~~yaLeeIara-nP~l~~~v~rdi~smltsk-d~~Dkl~aLnFi~alGen-~ 175 (253)
T 2db0_A 103 ELVKS-MIPVLFANYR---IGDEKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSK-NREDKLTALNFIEAMGEN-S 175 (253)
T ss_dssp HHHHH-HHHHHHHHSC---CCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTSCS-SHHHHHHHHHHHHTCCTT-T
T ss_pred HHHHh-hHHHHHHHHh---cCCccceecHHHHHHHHHHh-ChHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcc-C
Confidence 11222 2223333343 34566676677788887766 4677888888888888743 322333343333322222 2
Q ss_pred CCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCCh--hHHHHHHHHHHH
Q 046316 522 KGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDP--FISIDAIEVLEA 599 (966)
Q Consensus 522 ~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~--~~~~~~~~~l~~ 599 (966)
...+.||+| .|+.++.+-++=+...+.||+..+-..++ .+-+.+...+ +..+|+ .+...+.+-+..
T Consensus 176 ~~yv~PfLp----rL~aLL~D~deiVRaSaVEtL~~lA~~np-------klRkii~~kl-~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYVNPFLP----RIINLLHDGDEIVRASAVEALVHLATLND-------KLRKVVIKRL-EELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHGGGHH----HHHGGGGCSSHHHHHHHHHHHHHHHTSCH-------HHHHHHHHHH-HHCCCSCHHHHHHHHHHHHH
T ss_pred ccccCcchH----HHHHHHcCcchhhhHHHHHHHHHHHHcCH-------HHHHHHHHHH-HHhcCcHHHHHHHHHHHHHH
Confidence 245677776 66778888887788999999988876654 3445555553 345554 344455555544
Q ss_pred HH
Q 046316 600 IK 601 (966)
Q Consensus 600 l~ 601 (966)
+.
T Consensus 244 l~ 245 (253)
T 2db0_A 244 LL 245 (253)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 73
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.78 E-value=4.1 Score=47.28 Aligned_cols=394 Identities=15% Similarity=0.066 Sum_probs=197.4
Q ss_pred hHHHHHHHHHHhhcccc-chhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhH
Q 046316 133 HGGLRCLALLSADLDDA-IVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLK 211 (966)
Q Consensus 133 ~~aL~~L~~l~~~l~~~-~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 211 (966)
.|+|--|..+.++-..+ .+. ..-+|.|.+.+.+.+ ..++..|...+..+. .... +.+..+.. .
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~---~~~i~~LV~~L~s~~---~~~q~~Aa~~L~~La-------~~~~-~~k~~V~~--~ 89 (584)
T 3l6x_A 26 RGSLASLDSLRKGGPPPPNWR---QPELPEVIAMLGFRL---DAVKSNAAAYLQHLC-------YRND-KVKTDVRK--L 89 (584)
T ss_dssp --------------CCCCCCC---CCCHHHHHHHTTCSC---HHHHHHHHHHHHHHH-------TTCH-HHHHHHHH--T
T ss_pred cchHHHHHHHHhcCCCCCCcc---cccHHHHHHHHCCCC---HHHHHHHHHHHHHHH-------cCCh-HHHHHHHH--c
Confidence 46666676666542221 221 234677888887653 456655544333221 1111 11222221 1
Q ss_pred HHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHh-cc--h-hhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCC
Q 046316 212 PWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQN-FP--S-LAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDP 287 (966)
Q Consensus 212 ~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~-f~--~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~ 287 (966)
.-++.|+.+|..+ +..++..+..+|..|... -+ + .+... ..++++.+++.+ ..
T Consensus 90 G~Ip~LV~LL~s~-------~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~--GaIp~LV~LL~s----------~~---- 146 (584)
T 3l6x_A 90 KGIPVLVGLLDHP-------KKEVHLGACGALKNISFGRDQDNKIAIKNC--DGVPALVRLLRK----------AR---- 146 (584)
T ss_dssp THHHHHHHGGGCS-------SHHHHHHHHHHHHHHTSSSCHHHHHHHHHT--THHHHHHHHHHH----------CC----
T ss_pred CCcHHHHHHHCCC-------CHHHHHHHHHHHHHHHccCCHHHHHHHHHc--CCHHHHHHHHcC----------CC----
Confidence 3357778888763 346888888888888742 11 1 11111 123333333321 00
Q ss_pred CCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHH-HHHHhHHHHHHHHH-HhhcCCHHHHHHHhhCHHHHhhcccCCc
Q 046316 288 YAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVK-VIASNVRELVYHTI-AFLQMTEQQIHIWSIDANQFLADEDEST 365 (966)
Q Consensus 288 ~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~-~l~~~l~~li~~li-~~~~lt~ed~e~w~~Dp~~fv~de~d~~ 365 (966)
+ ..+...+...|.++...+..+. +.+..++.|+..++ |+...+....+ + .-.+ +-..
T Consensus 147 ------------~-~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~----~--~k~~--~~~d 205 (584)
T 3l6x_A 147 ------------D-MDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNE----D--CKPR--HIEW 205 (584)
T ss_dssp ------------S-HHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC------------------CCCC
T ss_pred ------------C-HHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccc----c--cccc--cccc
Confidence 0 2344444545555544444443 34567888888775 77655432110 0 0000 0012
Q ss_pred cchhhHHHHHHHHHHHHhCh---------hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHh
Q 046316 366 YSCRVSGALLLEEVVSYCGR---------EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEV 436 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~---------~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~ 436 (966)
-.++..|..+|..|+...++ ..++.++.++...+.. ++ ..-+.+|-|+.+|..++..+.....
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~-------~~-~~~~~~enav~aL~NLs~~~~~e~~ 277 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ-------KD-SDSKLVENCVCLLRNLSYQVHREIP 277 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHT-------TC-CSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcc-------cC-ccHHHHHHHHHHHHHhhcccccccc
Confidence 35677888888888653211 1122333333332221 11 2347889999999888865421110
Q ss_pred ---------------------cCCcc-ccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC---hh---HH--
Q 046316 437 ---------------------SGLTS-VRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS---DG---VL-- 486 (966)
Q Consensus 437 ---------------------~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~---~~---~~-- 486 (966)
.|... ++. ..+. .++..++ .+..+-++..|+|++..++..-. .. ..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~-~~v~-~Ll~LL~--~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 278 QAERYQEAAPNVANNTGTSPARGYELLFQP-EVVR-IYISLLK--ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp TCCC--------------CCCCGGGGGGSH-HHHH-HHHHHHH--HCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred chhhhhhhcccccccccccCchhHHHHhcc-cHHH-HHHHHHc--cCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 00000 010 1121 2222332 24578899999999999964311 11 11
Q ss_pred HHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC-CCCCccccHHHHHHHHHHHHhhc--------ChhhHHHHHHHHHH
Q 046316 487 EHFLSAAITTIAMDVPPPVKVGACRALSELLPKA-NKGNFQPQMMGLFSSLADLLHQA--------RDETLHLVLETLQA 557 (966)
Q Consensus 487 ~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~--------~~d~l~~~le~l~~ 557 (966)
...++.++..|.++ +..|+..|+.||.++..+. .+..+ -...+..|.+++... .+++...++.+|..
T Consensus 354 ~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N 429 (584)
T 3l6x_A 354 EKALSAIADLLTNE-HERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429 (584)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 24477777777644 6689999999999998763 22222 245667777777655 35677788888888
Q ss_pred HHhhcc-hhhcc-cccchHHHHHHHHhhc-CChhHHHHHHHHHHHHHcC
Q 046316 558 AIKAGF-LTASM-EPMISPLILNIWALHV-SDPFISIDAIEVLEAIKCS 603 (966)
Q Consensus 558 ~i~~~~-~~~~~-~~~l~p~~l~l~~~~~-~d~~~~~~~~~~l~~l~~~ 603 (966)
++..++ .+..+ ....+|.+.++ .++. ..+-....|.-+|..+.+.
T Consensus 430 L~a~~~~~~~~I~~~g~I~~Lv~L-L~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 430 VIAENLEAAKKLRETQGIEKLVLI-NKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHH-HTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HhcCCHHHHHHHHHCCChHHHHHH-HhCCCCChHHHHHHHHHHHHHHcC
Confidence 776555 32222 23456888888 4432 3555566666677666643
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.60 E-value=0.26 Score=49.21 Aligned_cols=188 Identities=14% Similarity=0.036 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCcHHHHHHHHhhhc-cccccccc--cCCCCChHHHHHHHHHHHHHhh
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKH-WQEGEESF--ELPAVSSEEKEVIRKLLLSSLD 86 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~pA~i~LKn~I~~~-W~~~~~~~--~~~~i~~~~K~~IR~~Ll~~L~ 86 (966)
.+.+.+..++....++|..+|..|=..|.++....+.-.|.+.+... |.-..... -+..-++ ..-..|+..|.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----~~~~~L~~~l~ 91 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE----RAVEPLIKALK 91 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----GGHHHHHHHTT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----HHHHHHHHHHc
Confidence 34455666666667899999999999999876533333333333210 00000000 0000000 12234555667
Q ss_pred hchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHh
Q 046316 87 DTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIV 166 (966)
Q Consensus 87 ~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~ 166 (966)
+++..+|..++.+++.+.. ++.++.|...+.++ ++.....|+.+|..+-. +..++.|..++
T Consensus 92 ~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l 152 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD-----------ERAVEPLIKAL 152 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-----------HHHHHHHHHHH
Confidence 7778888888888887753 45777777877764 77777778887776632 23556666766
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHH
Q 046316 167 SFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQF 246 (966)
Q Consensus 167 ~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l 246 (966)
.+. +..+|..|+..+..+- . +...+.+..+++. ++..+|..+.+.|..+
T Consensus 153 ~d~---~~~vr~~a~~aL~~~~-------~--------------~~~~~~L~~~l~d-------~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 153 KDE---DGWVRQSAADALGEIG-------G--------------ERVRAAMEKLAET-------GTGFARKVAVNYLETH 201 (211)
T ss_dssp TCS---SHHHHHHHHHHHHHHC-------S--------------HHHHHHHHHHHHH-------CCHHHHHHHHHHHHC-
T ss_pred cCC---CHHHHHHHHHHHHHhC-------c--------------hhHHHHHHHHHhC-------CCHHHHHHHHHHHHhc
Confidence 543 3567766555443321 0 1112334444442 1245788888888776
Q ss_pred HHhcc
Q 046316 247 IQNFP 251 (966)
Q Consensus 247 ~~~f~ 251 (966)
....+
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 65554
No 75
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.59 E-value=0.23 Score=49.14 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=115.6
Q ss_pred HHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHH
Q 046316 451 MITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMM 530 (966)
Q Consensus 451 ~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~ 530 (966)
.++..++ ++++.+|..|++.++++... ..+..++..|. +.+..||..|+.+|..+-..
T Consensus 18 ~~i~~L~---~~~~~vr~~A~~~L~~~~~~-------~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~~----------- 75 (201)
T 3ltj_A 18 MYIKNLQ---DDSYYVRRAAAYALGKIGDE-------RAVEPLIKALK-DEDAWVRRAAADALGQIGDE----------- 75 (201)
T ss_dssp HHHHHTT---CSCHHHHHHHHHHHHHHCCG-------GGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCG-----------
T ss_pred HHHHHhc---CCCHHHHHHHHHHHHhcCCh-------hHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCH-----------
Confidence 3344565 88999999999999987642 23455666665 44778999999999887421
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHH
Q 046316 531 GLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQL 610 (966)
Q Consensus 531 ~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l 610 (966)
..+..|..++.+.+..+...++++|...-. ....+.+.+.. ...|+.++..+...+..+..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l--~d~~~~vr~~a~~aL~~~~~-------- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKAL--KDEDWFVRIAAAFALGEIGD-------- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHT--TCSSHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHH--cCCCHHHHHHHHHHHHHhCC--------
Confidence 223455566776666777788888766422 13456666652 34577888888887776642
Q ss_pred HHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHH
Q 046316 611 ASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATF 686 (966)
Q Consensus 611 ~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~ 686 (966)
...+|.+...+..+ .......++..|..+ ..+ . ..+.|..++ .+.+..+...+..+|..+
T Consensus 137 -~~~~~~L~~~l~d~---~~~vr~~A~~aL~~~---~~~---~-----~~~~L~~~l-~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 -ERAVEPLIKALKDE---DGWVRQSAADALGEI---GGE---R-----VRAAMEKLA-ETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -GGGHHHHHHHTTCS---SHHHHHHHHHHHHHH---CSH---H-----HHHHHHHHH-HHCCHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHcCC---CHHHHHHHHHHHHHh---Cch---h-----HHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence 34667777777653 223455666666665 221 1 245556665 456777888887777653
No 76
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.56 E-value=4.8 Score=46.61 Aligned_cols=351 Identities=11% Similarity=0.125 Sum_probs=184.6
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHHHH------HHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH--HHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLEHF------LSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM--MGL 532 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~------l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l--~~i 532 (966)
+...++|.-+..++...+..-+...-..+ ...++..|. +...++|-.|...|..+..+. ..+|..+ ...
T Consensus 133 ~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~-d~rE~iRneallLL~~Lt~~n--~~iQklVAFEna 209 (651)
T 3grl_A 133 EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA-DSREVIRNDGVLLLQALTRSN--GAIQKIVAFENA 209 (651)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG-CSSHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTH
T ss_pred CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh-CchHHHHHHHHHHHHHHhcCC--HHHHHHHHHhcc
Confidence 67788898898898888876443333333 345666665 447899999999999988763 2333322 245
Q ss_pred HHHHHHHHhhcCh----hhHHHHHHHHHHHHhhcchhhc-c-cccchHHHHHHHHhhcCC-----hhH-H--HHHHHHHH
Q 046316 533 FSSLADLLHQARD----ETLHLVLETLQAAIKAGFLTAS-M-EPMISPLILNIWALHVSD-----PFI-S--IDAIEVLE 598 (966)
Q Consensus 533 l~~L~~ll~~~~~----d~l~~~le~l~~~i~~~~~~~~-~-~~~l~p~~l~l~~~~~~d-----~~~-~--~~~~~~l~ 598 (966)
++.|++++.+... .+...++..+....+.++.... + +...+|.+..++ +...+ ++- + ..+++++.
T Consensus 210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL-~~~~~~~~W~~Qk~~N~~~~L~iIr 288 (651)
T 3grl_A 210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF-EVGDENSGWSAQKVTNLHLMLQLVR 288 (651)
T ss_dssp HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG-CCCSCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh-CCCccccccHHHHHHHHHHHHHHHH
Confidence 7888888876543 3455666667666666531111 1 112223333331 11111 111 1 23556666
Q ss_pred HHHcCCC-------cHHHH-HHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHH-------hHHH
Q 046316 599 AIKCSPG-------CIHQL-ASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVC-------FDAV 663 (966)
Q Consensus 599 ~l~~~~~-------~~~~l-~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~-------fp~l 663 (966)
.++.-.+ +-..+ ...+++.+...+-.+.. .......|+-.++.++++-+. . +..+... .|++
T Consensus 289 lLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~-p~~i~~~Al~tla~~irgN~~-~-Q~~fa~~~vp~~~~~p~l 365 (651)
T 3grl_A 289 VLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGV-PADILTETINTVSEVIRGCQV-N-QDYFASVNAPSNPPRPAI 365 (651)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSC-CHHHHHHHHHHHHHHHTTCHH-H-HHHHHHCEESSSSCEEHH
T ss_pred HHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCC-CHHHHHHHHHHHHHHHhCCHH-H-HHHHhhccCCCCCCcChH
Confidence 6663211 11222 22344555555443321 235667888888888876541 1 1111111 2455
Q ss_pred HHHHh----ccCchHHhhhhHHHHHHHHhcCcc---ceeee----ccCC-cchHHHHHHHHHhhcCCCCCCccccchHHH
Q 046316 664 IRIIL----QSEDHSEMQNATECLATFISGGRQ---LMLVW----GGDS-GFTMRSLLDAASRLLNPDLESSGSLFVGSY 731 (966)
Q Consensus 664 ~~~l~----~s~d~~~lq~~~~~l~~~i~~~~~---~~~~~----~~~~-~~~l~~il~i~~~lL~~~~~~~~~~~vg~L 731 (966)
+.+++ .....++.-.++.||++|+.+..+ ++... ..++ .+.+..---++..+.+. +....++++-+
T Consensus 366 i~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~--d~~~~wfAavi 443 (651)
T 3grl_A 366 VVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFST--DSLSNWCAAVA 443 (651)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSS--CHHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccC--chHHHHHHHHH
Confidence 55432 223466678889999999987542 12211 0000 00000000012222221 22345666666
Q ss_pred HHHHHHhCCh------------hhhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCC
Q 046316 732 ILQLILHLPS------------QMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEG 799 (966)
Q Consensus 732 v~~li~~~~~------------~l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~ 799 (966)
+.+++..-+. ..++-.-.+++.+...|.....+.....+++.++.-++. +|+.+=+||+.
T Consensus 444 l~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e---~p~AV~dFL~~----- 515 (651)
T 3grl_A 444 LAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSN---CPIAVTHFLHN----- 515 (651)
T ss_dssp HHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHS-----
T ss_pred HHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhC---ChHHHHHHHcC-----
Confidence 6666654211 011111133444455555444466777888888888888 99998889963
Q ss_pred CcCcHHHHHHHHhcccccccccchhHHHHHHHHHHH
Q 046316 800 YGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLL 835 (966)
Q Consensus 800 ~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll 835 (966)
.+.++.++.. +.+ -.| +-.+.+-|||.++
T Consensus 516 -~s~l~~L~~~-i~~---~~~--~~~~lvqGL~a~L 544 (651)
T 3grl_A 516 -SANVPFLTGQ-IAE---NLG--EEEQLVQGLCALL 544 (651)
T ss_dssp -TTHHHHHHHH-HHS---CCC--HHHHHHHHHHHHH
T ss_pred -CchHHHHHHH-HHh---ccC--cchHHHHHHHHHH
Confidence 2456555533 221 112 3457777888765
No 77
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.55 E-value=0.14 Score=58.04 Aligned_cols=223 Identities=13% Similarity=0.065 Sum_probs=139.3
Q ss_pred CChhHHHHHHHHHHHhhhhcC--hhHH---HHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccH--HHHHH
Q 046316 462 QYPFLYARIFASVARFSSAIS--DGVL---EHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQM--MGLFS 534 (966)
Q Consensus 462 ~~~~Lr~Ra~~~l~~f~~~~~--~~~~---~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l--~~il~ 534 (966)
.++-++..|+|++..++..-+ .... ..+++.++..|.+ .+..||..|+.||.++..... ...+..+ ...+.
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~-~~~k~~I~~~GaI~ 289 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVK 289 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCC-HHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCC-HHHHHHHHHcCCHH
Confidence 346789999999999986532 1122 3457788888874 367899999999999875311 0111111 13456
Q ss_pred HHHHHHhhc-ChhhHHHHHHHHHHHHh-hcchhhcc--cccchHHHHHHHHhhcCCh---hHHHHHHHHHHHHHc----C
Q 046316 535 SLADLLHQA-RDETLHLVLETLQAAIK-AGFLTASM--EPMISPLILNIWALHVSDP---FISIDAIEVLEAIKC----S 603 (966)
Q Consensus 535 ~L~~ll~~~-~~d~l~~~le~l~~~i~-~~~~~~~~--~~~l~p~~l~l~~~~~~d~---~~~~~~~~~l~~l~~----~ 603 (966)
.|.+++... +.+.+..++.+|..+.. .+.....+ ....+|.+.++. ++.++. .+...+..+|..|+. .
T Consensus 290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL-~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 368 (458)
T 3nmz_A 290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL-TYRSQTNTLAIIESGGGILRNVSSLIATN 368 (458)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT-TCCCSSSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh-cCCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence 667765443 44566666666666554 21111111 234568888883 343332 366677888888875 3
Q ss_pred CCcHHHH-HHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHH-HHHhHHHHHHHhccCchHHhhhhHH
Q 046316 604 PGCIHQL-ASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAY-DVCFDAVIRIILQSEDHSEMQNATE 681 (966)
Q Consensus 604 ~~~~~~l-~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~-~~~fp~l~~~l~~s~d~~~lq~~~~ 681 (966)
++.-..+ ..-.+|.+...+.... ......|+-.+..+..+.+. .-..+. .-++|+|++++ ++.+..+...+..
T Consensus 369 ~~~~~~i~~~G~i~~Lv~LL~~~~---~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~I~~Lv~LL-~s~~~~v~~~Aa~ 443 (458)
T 3nmz_A 369 EDHRQILRENNCLQTLLQHLKSHS---LTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLI-HSKHKMIAMGSAA 443 (458)
T ss_dssp HHHHHHHHHTTHHHHHHHHSSCSC---HHHHHHHHHHHHHHHSSCHH-HHHHHHHHTHHHHHHTTT-TCSSHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCC---hHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHH
Confidence 3332222 3457899999887542 34677888888888754332 222223 23578999986 4667888999999
Q ss_pred HHHHHHhcCcc
Q 046316 682 CLATFISGGRQ 692 (966)
Q Consensus 682 ~l~~~i~~~~~ 692 (966)
+|.++....+.
T Consensus 444 AL~nL~~~~p~ 454 (458)
T 3nmz_A 444 ALRNLMANRPA 454 (458)
T ss_dssp HHHHHHTCCSC
T ss_pred HHHHHHcCCHh
Confidence 99999987653
No 78
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.17 E-value=0.19 Score=54.91 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHhhhhcChhHHHH-----HHHHHHhhhcC---------C-CCCcEehhHHHHHHhhcccCCCCCccccH
Q 046316 465 FLYARIFASVARFSSAISDGVLEH-----FLSAAITTIAM---------D-VPPPVKVGACRALSELLPKANKGNFQPQM 529 (966)
Q Consensus 465 ~Lr~Ra~~~l~~f~~~~~~~~~~~-----~l~~~~~~L~~---------~-~~~~Vr~~A~~al~~~~~~~~~~~l~p~l 529 (966)
-....|.|++++.+.. ++.... .++.++..|.. + .+..+|..|+.+|.+++.... ..+..+
T Consensus 47 ~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~--~~k~~i 122 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKATL 122 (354)
T ss_dssp GTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH--HHHHHH
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH--HHHHHH
Confidence 3455788999999754 222222 23444555421 1 134688999999999986421 112222
Q ss_pred ---HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh-cc-hhhc-ccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHc-
Q 046316 530 ---MGLFSSLADLLHQARDETLHLVLETLQAAIKA-GF-LTAS-MEPMISPLILNIWALHVSDPFISIDAIEVLEAIKC- 602 (966)
Q Consensus 530 ---~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~-~~-~~~~-~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~- 602 (966)
..++..|..++...+.+....+..+|..+... +. .... ...-.+|.++++.. ...++.++..+..++..|+.
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~-~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL-EVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHh-cCCCHHHHHHHHHHHHHHHcc
Confidence 34567788888876777777777777766542 22 1111 11234588888633 34566677777888888886
Q ss_pred CCCcHHHHH--HhhhcchHhhhcCCCCCC-chhhHHHHHHHHHHhhc--CChhHHHHHH-HHHhHHHHHHHhccCchHHh
Q 046316 603 SPGCIHQLA--SRILPYVGPILNNPQQQP-DGLVAGSLDLLTMLLKS--ASTDVVKAAY-DVCFDAVIRIILQSEDHSEM 676 (966)
Q Consensus 603 ~~~~~~~l~--~~~lP~l~~~l~~~~~~~-~~~~~~al~ll~~l~~~--~~~~l~~~~~-~~~fp~l~~~l~~s~d~~~l 676 (966)
.++.-..+. .-.+|.+...+....... ......+.-.|..+... ..+..-..+. .-.+|+|++++. +.+..+.
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~ 280 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSLTIV 280 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT-CSCHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc-CCChHHH
Confidence 444334443 578999999997543211 24566777777666652 1222222222 225788999875 5567789
Q ss_pred hhhHHHHHHHHhc
Q 046316 677 QNATECLATFISG 689 (966)
Q Consensus 677 q~~~~~l~~~i~~ 689 (966)
.+++.+|.++...
T Consensus 281 ~~A~~aL~nLa~~ 293 (354)
T 3nmw_A 281 SNACGTLWNLSAR 293 (354)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998654
No 79
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.16 E-value=11 Score=48.24 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=81.5
Q ss_pred cchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcC--C-cc-
Q 046316 366 YSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSG--L-TS- 441 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~--~-~~- 441 (966)
..+|.....++..+++.--....+.+++.+.+.++. + ...+|+++.++..+.+.+.+..... . ..
T Consensus 110 ~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~--------~---~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l 178 (1204)
T 3a6p_A 110 NHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ--------G---ETQTELVMFILLRLAEDVVTFQTLPPQRRRDI 178 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT--------C---HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC--------C---HHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 557888888888888764323345555555555432 1 2458899999999987654321000 0 00
Q ss_pred -------c-cHHHHHHHHHhhhh----------cC--CCCCChhHHHHHHHHHHHhhhhcChhHHH----HHHHHHHhhh
Q 046316 442 -------V-RLGELLEQMITEDI----------GT--GVHQYPFLYARIFASVARFSSAISDGVLE----HFLSAAITTI 497 (966)
Q Consensus 442 -------~-~~~~~l~~~i~~~l----------~~--~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~----~~l~~~~~~L 497 (966)
+ ++-.++.+.+-... +. ...+++-++..++-++..|.++++..... .+++.+...+
T Consensus 179 ~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l 258 (1204)
T 3a6p_A 179 QQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLL 258 (1204)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHc
Confidence 0 11111222111100 00 00134557788999999999988754432 3666666665
Q ss_pred cCCCCCcEehhHHHHHHhhccc
Q 046316 498 AMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 498 ~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
. +..+|..|+.+|..++..
T Consensus 259 ~---~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 259 N---EQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp G---CTTTHHHHHHHHHHHHTC
T ss_pred C---CHHHHHHHHHHHHHHHhC
Confidence 4 457899999999999975
No 80
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.94 E-value=0.17 Score=57.61 Aligned_cols=193 Identities=9% Similarity=0.059 Sum_probs=124.2
Q ss_pred HHHHHhhhcCCCCCcEehhHHHHHHhhcccCCC--CCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhh
Q 046316 490 LSAAITTIAMDVPPPVKVGACRALSELLPKANK--GNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTA 566 (966)
Q Consensus 490 l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~--~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~ 566 (966)
++.++..|.++ +..+|..|+.+|.+++..... ..+. -...+..|.+++...+.+....+..+|..+...++ ...
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVY--QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHH--HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45567777654 678999999999999854211 1111 12346777788877666777777778877765423 222
Q ss_pred cc-cccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhc--------CCCC-----CCchh
Q 046316 567 SM-EPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILN--------NPQQ-----QPDGL 632 (966)
Q Consensus 567 ~~-~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~--------~~~~-----~~~~~ 632 (966)
.+ ..-.+|.++++ .+...++.++..+..+|..|+..+..-..+.+-.+|.+...+. .+.. ....+
T Consensus 81 ~i~~~G~i~~Lv~l-L~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 81 ETRRQNGIREAVSL-LRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHTTCHHHHHHH-HTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHcCCHHHHHHH-HhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 11 23456888888 4435577888889999999997665544455588999999993 2211 11244
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHH--HHhHHHHHHHhcc-----CchHHhhhhHHHHHHHHh
Q 046316 633 VAGSLDLLTMLLKSASTDVVKAAYD--VCFDAVIRIILQS-----EDHSEMQNATECLATFIS 688 (966)
Q Consensus 633 ~~~al~ll~~l~~~~~~~l~~~~~~--~~fp~l~~~l~~s-----~d~~~lq~~~~~l~~~i~ 688 (966)
...++-.|..+... ++.-..+.+ -++|+|+.++..+ .+..+.+++..+|+++..
T Consensus 160 ~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~ 220 (457)
T 1xm9_A 160 FFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220 (457)
T ss_dssp HHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhccc
Confidence 55788888888865 333333342 4678888887631 345677888888888743
No 81
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.62 E-value=0.24 Score=56.03 Aligned_cols=218 Identities=12% Similarity=0.090 Sum_probs=133.7
Q ss_pred HHHHHHHHHHhhhhcChhHHHH-----HHHHHHhhhcC---------C-CCCcEehhHHHHHHhhcccCCCCCcccc---
Q 046316 467 YARIFASVARFSSAISDGVLEH-----FLSAAITTIAM---------D-VPPPVKVGACRALSELLPKANKGNFQPQ--- 528 (966)
Q Consensus 467 r~Ra~~~l~~f~~~~~~~~~~~-----~l~~~~~~L~~---------~-~~~~Vr~~A~~al~~~~~~~~~~~l~p~--- 528 (966)
.+.|.|++++++.. ++.... .++.++..|.. + .+..+|..|+.+|.+++.... .-+..
T Consensus 165 ~~qAv~aL~nls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~--~~k~~i~~ 240 (458)
T 3nmz_A 165 ICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKATLCS 240 (458)
T ss_dssp THHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCc--ccHHHHHH
Confidence 44889999998643 222222 23444444421 1 134578899999999986521 11222
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh-cc-hhhc-ccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHc-CC
Q 046316 529 MMGLFSSLADLLHQARDETLHLVLETLQAAIKA-GF-LTAS-MEPMISPLILNIWALHVSDPFISIDAIEVLEAIKC-SP 604 (966)
Q Consensus 529 l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~-~~-~~~~-~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~-~~ 604 (966)
....+..|..++...+.+....+..+|..+... +. .... ...-.+|.++++.. ...++.+...+..++..|+. .+
T Consensus 241 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl-~s~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL-EVKKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT-TCCSHHHHHHHHHHHHHHHHHCH
T ss_pred cCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh-cCCCHHHHHHHHHHHHHHccCCH
Confidence 234567888888877778888888787766442 22 1111 11234588888633 34466677777888888886 54
Q ss_pred CcHHHHH--HhhhcchHhhhcCCCCCC-chhhHHHHHHHHHHhhc--CChhHHHHHH-HHHhHHHHHHHhccCchHHhhh
Q 046316 605 GCIHQLA--SRILPYVGPILNNPQQQP-DGLVAGSLDLLTMLLKS--ASTDVVKAAY-DVCFDAVIRIILQSEDHSEMQN 678 (966)
Q Consensus 605 ~~~~~l~--~~~lP~l~~~l~~~~~~~-~~~~~~al~ll~~l~~~--~~~~l~~~~~-~~~fp~l~~~l~~s~d~~~lq~ 678 (966)
+.-..+. .-.+|.+...+....... ......+.-.|..+... ..+..-..+. .-++|+|+.++. +.+..+..+
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~-~~~~~v~~~ 398 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSN 398 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS-CSCHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc-CCChHHHHH
Confidence 4444453 568999999998653221 13566777777776652 2222223222 235788898875 556778999
Q ss_pred hHHHHHHHHhcC
Q 046316 679 ATECLATFISGG 690 (966)
Q Consensus 679 ~~~~l~~~i~~~ 690 (966)
++.+|.++...+
T Consensus 399 A~~aL~nLa~~~ 410 (458)
T 3nmz_A 399 ACGTLWNLSARN 410 (458)
T ss_dssp HHHHHHHHHSSC
T ss_pred HHHHHHHHHcCC
Confidence 999999997543
No 82
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.38 E-value=0.17 Score=58.48 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=122.3
Q ss_pred HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc--ChhhHHHHHHHHHHHHhhcchh
Q 046316 488 HFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA--RDETLHLVLETLQAAIKAGFLT 565 (966)
Q Consensus 488 ~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~--~~d~l~~~le~l~~~i~~~~~~ 565 (966)
..++.+...+++..-..=|-+|+.+|+.|.+.- +..+. ..-+..|+..+... +.|+...+||||..++..+...
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-RLEVG---IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-TTHHH---HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-HHHhh---hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 334444444443223344788999999987542 22222 22345666666554 3367888999998887643210
Q ss_pred h------c--------cc------ccchHHHHHHHHhhcCChhHHHHHHHHHHHHHc-CCCcHHH-H--HHhhhcchHhh
Q 046316 566 A------S--------ME------PMISPLILNIWALHVSDPFISIDAIEVLEAIKC-SPGCIHQ-L--ASRILPYVGPI 621 (966)
Q Consensus 566 ~------~--------~~------~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~-~~~~~~~-l--~~~~lP~l~~~ 621 (966)
. . +. ..-++.++.+. ...|.+.|..++.+|+.|+. .|..+.. + .+.-+|.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL--~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLL--EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHT--TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHh--cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 0 0 00 11234555552 34577889999999999994 4553332 2 33678888888
Q ss_pred hcCCCCCCchhhHHHHHHHHHHhhcCChhHHHH-HHHHHhHHHHHHHhc---cCchHHhhhhHHHHHHHHhcC
Q 046316 622 LNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKA-AYDVCFDAVIRIILQ---SEDHSEMQNATECLATFISGG 690 (966)
Q Consensus 622 l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~-~~~~~fp~l~~~l~~---s~d~~~lq~~~~~l~~~i~~~ 690 (966)
|..+. ..+..+++-+|..+.++.+ .+-+. .|+..|+.|+.++.. .++..+.+.+..++.+++++.
T Consensus 175 L~d~r---E~iRneallLL~~Lt~~n~-~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N 243 (651)
T 3grl_A 175 LADSR---EVIRNDGVLLLQALTRSNG-AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN 243 (651)
T ss_dssp GGCSS---HHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC
T ss_pred HhCch---HHHHHHHHHHHHHHhcCCH-HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC
Confidence 88652 3677899999999999865 33332 345789999999873 234567899999999988876
No 83
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.38 E-value=0.33 Score=51.45 Aligned_cols=178 Identities=11% Similarity=0.075 Sum_probs=113.0
Q ss_pred ehhHHHHHHhhcccC-CCCCccccHHHHHHHHHH-HHhhcChhhHHHHHHHHHHHHhhcc-hhhcc-cccchHHHHHHHH
Q 046316 506 KVGACRALSELLPKA-NKGNFQPQMMGLFSSLAD-LLHQARDETLHLVLETLQAAIKAGF-LTASM-EPMISPLILNIWA 581 (966)
Q Consensus 506 r~~A~~al~~~~~~~-~~~~l~p~l~~il~~L~~-ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~-~~~l~p~~l~l~~ 581 (966)
|..|...|..+++.. ....+.. ...+..+.. ++...+.+....++.+|..+.+.++ ....+ ....+|.++++..
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~--~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQ--LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHH--cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 444666666666531 0111100 112344555 6666666788888888888877655 22111 1234588888843
Q ss_pred hhcCChhHHHHHHHHHHHHHc-CCCcHHHHH-HhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHH-HH
Q 046316 582 LHVSDPFISIDAIEVLEAIKC-SPGCIHQLA-SRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAY-DV 658 (966)
Q Consensus 582 ~~~~d~~~~~~~~~~l~~l~~-~~~~~~~l~-~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~-~~ 658 (966)
+..++.++..+..+|..++. .+.....+. .-.+|.+..++.+. .......++-.++.+..+.+ ..-..++ .-
T Consensus 135 -~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~---d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g 209 (296)
T 1xqr_A 135 -RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGHP-EHKGTLCSMG 209 (296)
T ss_dssp -HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCG-GGHHHHHHTT
T ss_pred -cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCCh-HHHHHHHHcC
Confidence 44467788888888888884 444333333 36789999999864 23566788888999888744 2322222 24
Q ss_pred HhHHHHHHHhccCchHHhhhhHHHHHHHHhcCc
Q 046316 659 CFDAVIRIILQSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 659 ~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
++|+|+.++. +.+..+...+..+|.+++..++
T Consensus 210 ~i~~Lv~LL~-~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 210 MVQQLVALVR-TEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHHT-SCCSTHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHc-CCChhHHHHHHHHHHHHHhCCh
Confidence 6788999874 6688899999999999988743
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.61 E-value=0.18 Score=54.71 Aligned_cols=149 Identities=13% Similarity=0.034 Sum_probs=89.7
Q ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcC
Q 046316 379 VVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGT 458 (966)
Q Consensus 379 L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~ 458 (966)
.++.||+.-...++..+.+.+++ ++...|--+++.+..++.. .+ ++- +..+.+..+++
T Consensus 57 ~G~~f~~~e~t~lf~~v~kl~~s----------~d~~lKrLvYLyl~~~~~~----~~------e~i-Lv~Nsl~kDl~- 114 (355)
T 3tjz_B 57 QGEHLGTTEATEAFFAMTKLFQS----------NDPTLRRMCYLTIKEMSCI----AE------DVI-IVTSSLTKDMT- 114 (355)
T ss_dssp HTCCCCHHHHHHHHHHHHGGGGC----------CCHHHHHHHHHHHHHHTTT----SS------CGG-GGHHHHHHHHH-
T ss_pred CCCCCchhHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHhCCC----HH------HHH-HHHHHHHhhcC-
Confidence 33455543344556666666653 2345666666666555432 11 111 35666777887
Q ss_pred CCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHH
Q 046316 459 GVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLAD 538 (966)
Q Consensus 459 ~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ 538 (966)
+++|++|+-|+-+++++. .++....+...+-++|. +.++-||-.|+-|...+++.. ++.++. +++.+..
T Consensus 115 --~~N~~iR~lALRtL~~I~---~~~m~~~l~~~lk~~L~-d~~pyVRk~A~l~~~kL~~~~-pe~v~~----~~~~l~~ 183 (355)
T 3tjz_B 115 --GKEDSYRGPAVRALCQIT---DSTMLQAIERYMKQAIV-DKVPSVSSSALVSSLHLLKCS-FDVVKR----WVNEAQE 183 (355)
T ss_dssp --SSCHHHHHHHHHHHHHHC---CTTTHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHTTTC-HHHHHT----THHHHHH
T ss_pred --CCcHhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhccC-HHHHHH----HHHHHHH
Confidence 899999999999999984 44566777777778876 457789999999988887653 222332 3344444
Q ss_pred HHhhcChhhHHHHHHHHHHHHh
Q 046316 539 LLHQARDETLHLVLETLQAAIK 560 (966)
Q Consensus 539 ll~~~~~d~l~~~le~l~~~i~ 560 (966)
++.+...-+...++-.+.++..
T Consensus 184 ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 184 AASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHT
T ss_pred HhcCCCccHHHHHHHHHHHHHh
Confidence 5544333344444444444433
No 85
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.36 E-value=0.34 Score=52.51 Aligned_cols=234 Identities=13% Similarity=0.121 Sum_probs=115.8
Q ss_pred cchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHH
Q 046316 366 YSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLG 445 (966)
Q Consensus 366 ~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~ 445 (966)
...|.-..-.+..+.+. .++++ -+.+.+.+-++. + +.-.|=.||.+++++.+. ++-
T Consensus 82 ~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~---------~-N~~iR~lALRtL~~I~~~------------~m~ 137 (355)
T 3tjz_B 82 PTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTG---------K-EDSYRGPAVRALCQITDS------------TML 137 (355)
T ss_dssp HHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHS---------S-CHHHHHHHHHHHHHHCCT------------TTH
T ss_pred HHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCC---------C-cHhHHHHHHHHHhcCCCH------------HHH
Confidence 55677777777776666 44444 334444444432 2 346788899999887431 122
Q ss_pred HHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCc
Q 046316 446 ELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNF 525 (966)
Q Consensus 446 ~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l 525 (966)
+.+...+...+. +.+|++|..|+.++.+.... .|+....+++.+-..+. +.+..|...|..++..+.+..
T Consensus 138 ~~l~~~lk~~L~---d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~-d~n~~V~~~Al~lL~ei~~~d----- 207 (355)
T 3tjz_B 138 QAIERYMKQAIV---DKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAAS-SDNIMVQYHALGLLYHVRKND----- 207 (355)
T ss_dssp HHHHHHHHHHHT---CSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHhhc-----
Confidence 223334444555 89999999999999988765 46777788887777765 446667788888888776542
Q ss_pred cccHHHHHHHHHHHHhhcCh--h-hHHHHHHHHHHHHhhc-chhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046316 526 QPQMMGLFSSLADLLHQARD--E-TLHLVLETLQAAIKAG-FLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIK 601 (966)
Q Consensus 526 ~p~l~~il~~L~~ll~~~~~--d-~l~~~le~l~~~i~~~-~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~ 601 (966)
...+..+..-+.+... . ....++..+......+ + .....+.+++... .+ .+++.+ +.||...+.
T Consensus 208 ----~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~-L~-~~~~aV---vyEa~k~I~ 275 (355)
T 3tjz_B 208 ----RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESC-LR-NKHEMV---VYEAASAIV 275 (355)
T ss_dssp ----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CC-CC-CSSHHH---HHHHHHHHT
T ss_pred ----hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHH-Hc-CCChHH---HHHHHHHHH
Confidence 1122233333333211 1 2223333333333322 2 1111222322222 22 234433 456666666
Q ss_pred cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCC
Q 046316 602 CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAS 648 (966)
Q Consensus 602 ~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~ 648 (966)
..+..-........+++...+.++.. ..-..||..+..++..-|
T Consensus 276 ~l~~~~~~~~~~a~~~L~~fLss~d~---niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 276 NLPGCSAKELAPAVSVLQLFCSSPKA---ALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp C-----------CCCTHHHHHHSSSS---SSHHHHHHCC--------
T ss_pred hccCCCHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHHCc
Confidence 55443233445667777777765432 345667777777776654
No 86
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.19 E-value=23 Score=44.31 Aligned_cols=366 Identities=10% Similarity=0.109 Sum_probs=168.1
Q ss_pred CCC-hHHHHHHHHHHHHHhh---hc---h--HHHHHHHHHHHHHHHhccCCCCccchHHHHHH----HhcccCchhhHhH
Q 046316 68 AVS-SEEKEVIRKLLLSSLD---DT---H--RKICTAISMAVASIAAYDWPEDWPDLLPFLLK----LITDQSNMNGVHG 134 (966)
Q Consensus 68 ~i~-~~~K~~IR~~Ll~~L~---~~---~--~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~----~l~s~~~~~~~~~ 134 (966)
.+. +.+|..+-+.+-.++. .+ + ..+++.+++++++-.++=- .+| ++|+.+++ .+.. +++.....
T Consensus 509 ~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~-~h~-~~L~~vl~~L~~~m~~-~~~~vq~a 585 (1073)
T 3gjx_A 509 AMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR-AHW-KFLKTVVNKLFEFMHE-THDGVQDM 585 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH-HCH-HHHHHHHHHHHHHTTC-CSTTHHHH
T ss_pred cCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH-hCH-HHHHHHHHHHHHHHhc-CCHHHHHH
Confidence 344 4566666654443332 21 2 2366667788887554310 234 34444444 4444 36677888
Q ss_pred HHHHHHHHHhhccccc-------hhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccc--hhHHHHh
Q 046316 135 GLRCLALLSADLDDAI-------VPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVC--KTEMFAL 205 (966)
Q Consensus 135 aL~~L~~l~~~l~~~~-------~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~--~~~~~~~ 205 (966)
|..+|..|+++=.+.. ..+.+.+++..+.++..... ......+|.++..++....... ..-+..+
T Consensus 586 A~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~------~~~~~~lyeav~~vi~~~p~~~~~~~~i~~L 659 (1073)
T 3gjx_A 586 ACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ------PQQVHTFYEAVGYMIGAQTDQTVQEHLIEKY 659 (1073)
T ss_dssp HHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 9999999987644321 12344555555555554332 1233455555555544433211 1113334
Q ss_pred hHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHH---hhcc
Q 046316 206 MMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTR---SSIE 282 (966)
Q Consensus 206 ~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~i~ 282 (966)
+.+.+..|-....+.-+.+....|++..+--..++||...+....+..+.+++..++..+.+.. +.|-. ..|.
T Consensus 660 m~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y----~~~s~~i~~~v~ 735 (1073)
T 3gjx_A 660 MLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVY----KCLSENISAAIQ 735 (1073)
T ss_dssp THHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4455566655444332221101122212444567788888888888877777766554333222 22210 1111
Q ss_pred CCCCCCCCCcCCCCCc--cchHHHHHHHHHHHHHHhcChh-HHHHHHHhHHHHHHHHH-HhhcCCHHHHHHHhhCHHHHh
Q 046316 283 GTEDPYAGRYDSDGAE--KSLDSFVIQLFEFLLTIVGSAK-LVKVIASNVRELVYHTI-AFLQMTEQQIHIWSIDANQFL 358 (966)
Q Consensus 283 ~~~~~~~~~~d~~g~~--~~~~~l~~~~~efl~~~~~~~~-~~~~l~~~l~~li~~li-~~~~lt~ed~e~w~~Dp~~fv 358 (966)
.. +.... ..+ ..+..+...++.++.+.+++.. ......+.++.++..++ -|..-.
T Consensus 736 ~~-----g~~~~-~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~--------------- 794 (1073)
T 3gjx_A 736 AN-----GEMVT-KQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNV--------------- 794 (1073)
T ss_dssp HH-----CGGGG-SSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSC---------------
T ss_pred hC-----Cchhh-ccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCC---------------
Confidence 00 00000 000 1123455567777777765432 22222334444554443 222100
Q ss_pred hcccCCccchhh-HHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhc
Q 046316 359 ADEDESTYSCRV-SGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVS 437 (966)
Q Consensus 359 ~de~d~~~s~R~-aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~ 437 (966)
-..|. ....++..+++++|....+.+...+...+...-+.=..+-.+..-.|..-+.++..+...+...--
T Consensus 795 -------p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~- 866 (1073)
T 3gjx_A 795 -------PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFL- 866 (1073)
T ss_dssp -------GGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTT-
T ss_pred -------cccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHH-
Confidence 01122 456677778888776432222222222232222111112223456677766677776554322100
Q ss_pred CCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhh
Q 046316 438 GLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSS 479 (966)
Q Consensus 438 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~ 479 (966)
..++-.+..++...+ -.++ +.++=+-..++-++-.+.+
T Consensus 867 ~l~~~~~~~~i~~i~-wa~k---h~~r~i~~~~l~~~~~ll~ 904 (1073)
T 3gjx_A 867 AIPPAQFKLVLDSII-WAFK---HTMRNVADTGLQILFTLLQ 904 (1073)
T ss_dssp TSCHHHHHHHHHHHH-HHHT---CSSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHcC---CCChhHHHHHHHHHHHHHH
Confidence 001112333444433 3444 5666666666655554443
No 87
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.07 E-value=1.9 Score=42.98 Aligned_cols=171 Identities=18% Similarity=0.168 Sum_probs=111.6
Q ss_pred CCChhHHHHHHHHHHHhhhhcC----hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccc-cHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAIS----DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQP-QMMGLFSS 535 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~----~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p-~l~~il~~ 535 (966)
+..+.++.||+.+++......+ ......+++.++..+. +.+..|-+.|.+|++.+++..+ +.| ....++..
T Consensus 44 dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vp---L~~~~y~Kl~~a 119 (265)
T 3b2a_A 44 EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS-QENEKVTIKALRALGYLVKDVP---MGSKTFLKAAKT 119 (265)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCC---CCHHHHHHHHHH
Confidence 7889999999999999988754 3567788888888876 4477888999999999998742 222 23445566
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhh
Q 046316 536 LADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRIL 615 (966)
Q Consensus 536 L~~ll~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~l 615 (966)
+..++.+-.+=....+.|.+... . .......+..++.++. .+.|+.+..++...|.++++..+.- .+.+.++
T Consensus 120 L~dlik~~~~il~~eaae~Lgkl----k-v~~~~~~V~~~l~sLl--~Skd~~vK~agl~~L~eia~~S~D~-~i~~~I~ 191 (265)
T 3b2a_A 120 LVSLLESPDDMMRIETIDVLSKL----Q-PLEDSKLVRTYINELV--VSPDLYTKVAGFCLFLNMLNSSADS-GHLTLIL 191 (265)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHC----C-BSCCCHHHHHHHHHHH--TCSSHHHHHHHHHHHHHHGGGCSSC-CCGGGTT
T ss_pred HHHHhcCCCchHHHHHHHHhCcC----C-cccchHHHHHHHHHHH--hCCChhHHHHHHHHHHHhhcccCCH-HHHHHHH
Confidence 66666622221222233333222 1 1111234667777874 7889999999999999998542211 1223444
Q ss_pred cchHhhhcCCCCCCchhhHHHHHHHHHHhhc
Q 046316 616 PYVGPILNNPQQQPDGLVAGSLDLLTMLLKS 646 (966)
Q Consensus 616 P~l~~~l~~~~~~~~~~~~~al~ll~~l~~~ 646 (966)
--+...++++ ..++++-||+.+-.++..
T Consensus 192 ~eI~elL~~e---D~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 192 DEIPSLLQND---NEFIVELALDVLEKALSF 219 (265)
T ss_dssp TTHHHHHTCS---CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHcC
Confidence 5556666654 236778888888777643
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=92.71 E-value=4.9 Score=40.12 Aligned_cols=169 Identities=12% Similarity=0.065 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhc--ChhHHHHHH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAI--SDGVLEHFL 490 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~--~~~~~~~~l 490 (966)
+-..+..+|++++-+-....+..+ ...++.+|..+|- .+. +.+--+.-+|+-|++...+.. +++.+..+.
T Consensus 46 D~~vk~raL~~LeellK~~~~~l~----~~~~e~~Ld~iI~-llk---~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~ 117 (265)
T 3b2a_A 46 DETTRLRAFVALGEILKRADSDLR----MMVLERHLDVFIN-ALS---QENEKVTIKALRALGYLVKDVPMGSKTFLKAA 117 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHH----HHHHHHHHHHHHH-TCC---STTHHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcccccc----HHHHHHHHHHHHH-HHh---ccchhHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 467889999999877543211111 1235667776652 233 788899999999999999985 467777777
Q ss_pred HHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh--cc-hhhc
Q 046316 491 SAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKA--GF-LTAS 567 (966)
Q Consensus 491 ~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~--~~-~~~~ 567 (966)
.++.+.+. .++.+++.+|+..+..+ .+....+.++..++.++...+.++....+..+..+-+. |+ ....
T Consensus 118 ~aL~dlik-~~~~il~~eaae~Lgkl-------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~ 189 (265)
T 3b2a_A 118 KTLVSLLE-SPDDMMRIETIDVLSKL-------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTL 189 (265)
T ss_dssp HHHHHHTT-SCCHHHHHHHHHHHHHC-------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGG
T ss_pred HHHHHHhc-CCCchHHHHHHHHhCcC-------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHH
Confidence 77777766 55778999999999876 12333466778888888555557888888888777553 33 3333
Q ss_pred ccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcC
Q 046316 568 MEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCS 603 (966)
Q Consensus 568 ~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~ 603 (966)
...++ +.++ +..||+++..+.+.++.+.+.
T Consensus 190 I~~eI-~elL-----~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 190 ILDEI-PSLL-----QNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp TTTTH-HHHH-----TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHH-HHHH-----cCCCHHHHHHHHHHHHHHHcC
Confidence 44455 4433 445999999999988888755
No 89
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=91.10 E-value=0.3 Score=54.78 Aligned_cols=185 Identities=14% Similarity=0.074 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc
Q 046316 464 PFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA 543 (966)
Q Consensus 464 ~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 543 (966)
.-+|-.|+.++|.. ..++++ .+++..++..+. ...=.||-++.-+|+.+ .+ .+.. ++.++..++..+.+.
T Consensus 242 APVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~-~~~WEVRHGGLLGLKYL-~D----LL~~-Ld~Vv~aVL~GL~D~ 311 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLD-SGDWQVQFSGLIALGYL-KE----FVED-KDGLCRKLVSLLSSP 311 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGG-CSCHHHHHHHHHHHHHT-GG----GCCC-HHHHHHHHHHHTTCS
T ss_pred eehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcC-CCCeeehhhhHHHHHHH-HH----HHHH-HHHHHHHHHhhcCCc
Confidence 45899999999998 777765 345555554433 23457888899999987 22 1222 888899999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHhh--cCCh-hHHHHHHHHHHHHHcCCC---cHHHHHHhhhcc
Q 046316 544 RDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALH--VSDP-FISIDAIEVLEAIKCSPG---CIHQLASRILPY 617 (966)
Q Consensus 544 ~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~~--~~d~-~~~~~~~~~l~~l~~~~~---~~~~l~~~~lP~ 617 (966)
++|+...+.++|..+.. + ..+-.++-.+|..- ..|- .....++++|.+|++.|. ....+.+++.|+
T Consensus 312 DDDVRAVAAetLiPIA~--p------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PF 383 (800)
T 3oc3_A 312 DEDIKLLSAELLCHFPI--T------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPC 383 (800)
T ss_dssp SHHHHHHHHHHHTTSCC--S------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGG
T ss_pred ccHHHHHHHHHhhhhcc--h------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhh
Confidence 99999999999976652 1 12323333445432 2231 245677889999985533 123566777777
Q ss_pred hHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHH
Q 046316 618 VGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLA 684 (966)
Q Consensus 618 l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~ 684 (966)
+...+. .....++..+..++ . ..+++.+++-++-..+.++++.+..+.+
T Consensus 384 LRHtIT-------SVR~AVL~TL~tfL---~--------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 384 FTSPVP-------EVRTSILNMVKNLS---E--------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTCSSH-------HHHHHHHHHTTTCC---C--------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hcCCcH-------HHHHHHHHHHHHHH---h--------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 766543 23344455555544 1 1235566666665566777777766664
No 90
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=90.41 E-value=35 Score=40.63 Aligned_cols=225 Identities=11% Similarity=0.092 Sum_probs=126.9
Q ss_pred CCChhHHHHHHHHHHHhhhhcC-h-hHH-HHHHHHHHhhhcCCCCC--cEehhHHHHHHhhcccCCC-CCcccc-HHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAIS-D-GVL-EHFLSAAITTIAMDVPP--PVKVGACRALSELLPKANK-GNFQPQ-MMGLF 533 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~-~-~~~-~~~l~~~~~~L~~~~~~--~Vr~~A~~al~~~~~~~~~-~~l~p~-l~~il 533 (966)
++.+-.|.-|+|+++.++..-. . ... +..++.++..|.+.... .+|..|+.||.++.-..++ ..+..+ ....+
T Consensus 468 S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI 547 (778)
T 3opb_A 468 NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAI 547 (778)
T ss_dssp GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccch
Confidence 6778899999999999986521 1 111 23466677777644222 3799999999998854221 111111 11455
Q ss_pred HHHHHHHhh-cChh----------h---HHHHHHHHHHHHhhc-----chhhcccc--cchHHHHHHHHhhcCChhHHHH
Q 046316 534 SSLADLLHQ-ARDE----------T---LHLVLETLQAAIKAG-----FLTASMEP--MISPLILNIWALHVSDPFISID 592 (966)
Q Consensus 534 ~~L~~ll~~-~~~d----------~---l~~~le~l~~~i~~~-----~~~~~~~~--~l~p~~l~l~~~~~~d~~~~~~ 592 (966)
..|..++.. .+.+ . ...++-+|....+.+ .....+.. ...|.+.++. ...++.++.+
T Consensus 548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL--~s~n~~VrrA 625 (778)
T 3opb_A 548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM--LDENVPLQRS 625 (778)
T ss_dssp HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG--GCSSHHHHHH
T ss_pred HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH--hCCCHHHHHH
Confidence 666666652 1111 1 233444554454432 00111111 1345555552 1346689999
Q ss_pred HHHHHHHHHcCCCcH-HHHHH----h---hhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHH--HHhHH
Q 046316 593 AIEVLEAIKCSPGCI-HQLAS----R---ILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYD--VCFDA 662 (966)
Q Consensus 593 ~~~~l~~l~~~~~~~-~~l~~----~---~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~--~~fp~ 662 (966)
+.+++..|...|+.. ..+.. + -++.+...++.+. .+....|.-.++.+....+ .....++. ..+..
T Consensus 626 A~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D---~~~r~AAagALAnLts~~~-~ia~~ll~~~~gi~~ 701 (778)
T 3opb_A 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD---VESQRAVAAIFANIATTIP-LIAKELLTKKELIEN 701 (778)
T ss_dssp HHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHCH-HHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC---HHHHHHHHHHHHHhcCCCh-HHHHHHHHccccHHH
Confidence 999999999777643 22321 2 2667777776532 3444555555555543322 11122221 24567
Q ss_pred HHHHHhc-cCchHHhhhhHHHHHHHHhcCc
Q 046316 663 VIRIILQ-SEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 663 l~~~l~~-s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
++.++.. .++.++...+..++.|+..+.+
T Consensus 702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 702 AIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 7777654 2788999999999999998543
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=88.98 E-value=0.65 Score=48.69 Aligned_cols=182 Identities=9% Similarity=0.060 Sum_probs=110.1
Q ss_pred CccchhhHHHHHHHHHHHHhChhhH--------HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhH
Q 046316 364 STYSCRVSGALLLEEVVSYCGREGI--------DAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAE 435 (966)
Q Consensus 364 ~~~s~R~aa~~lL~~L~~~~~~~~~--------~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~ 435 (966)
-.|..|..|.+-|..+....+.... ..+...+...+. + .+....+.++-++..+...+....
T Consensus 21 k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~---------D-sN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 21 KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT---------D-SNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT---------C-SSHHHHHHHHHHHHHHHTTCC---
T ss_pred CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc---------c-chHHHHHHHHHHHHHHHHHhhhhh
Confidence 3599999998877776664332111 111122333332 2 245677778887777654221100
Q ss_pred hcC-CccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHH
Q 046316 436 VSG-LTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALS 514 (966)
Q Consensus 436 ~~~-~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~ 514 (966)
..+ ....-+..++...+-..+. +..+-+|..|+-++-.+.+...+ ...+++.++.++.+ .++.||..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~---~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l~~-Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLT---SSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFFEK-KLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGGGC-SCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhc---CccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence 000 0000022233333322233 67888999998888888766432 22456667777763 36789999999999
Q ss_pred hhcccCCC--CCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh
Q 046316 515 ELLPKANK--GNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKA 561 (966)
Q Consensus 515 ~~~~~~~~--~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~ 561 (966)
.++..... -..++.++.++..+..++++.+.++....++.+..++..
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 98876222 234667888999999999999999999999998888753
No 92
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=88.84 E-value=8 Score=36.98 Aligned_cols=180 Identities=15% Similarity=0.142 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhH-HHHHHHHHHHHhhcch
Q 046316 486 LEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETL-HLVLETLQAAIKAGFL 564 (966)
Q Consensus 486 ~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l-~~~le~l~~~i~~~~~ 564 (966)
-..++..++..|.+| --.||.-|.+-+....+. ......+++..|+.++...+.=-+ ..+-.++..+....|
T Consensus 30 d~~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~-----~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDD-LWTVVKNAISIIMVIAKT-----REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP- 102 (253)
T ss_dssp CHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-
T ss_pred hHHHHHHHHHHhccH-HHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-
Confidence 346788888888632 335888888888777654 233456677888888887765222 223344444444444
Q ss_pred hhcccccchHHHHHHHHhh-cCChhHHHHHHHHHHHHH-cCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHH
Q 046316 565 TASMEPMISPLILNIWALH-VSDPFISIDAIEVLEAIK-CSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTM 642 (966)
Q Consensus 565 ~~~~~~~l~p~~l~l~~~~-~~d~~~~~~~~~~l~~l~-~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~ 642 (966)
.....++|. +|+++ ..||..+.-....|+.+. ..|..... +.--|.+.+.++. ..--..+|.+++.
T Consensus 103 --e~v~~vVp~---lfanyrigd~kikIn~~yaLeeIaranP~l~~~----v~rdi~smltskd---~~Dkl~aLnFi~a 170 (253)
T 2db0_A 103 --ELVKSMIPV---LFANYRIGDEKTKINVSYALEEIAKANPMLMAS----IVRDFMSMLSSKN---REDKLTALNFIEA 170 (253)
T ss_dssp --HHHHHHHHH---HHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHTSCSS---HHHHHHHHHHHHT
T ss_pred --HHHHhhHHH---HHHHHhcCCccceecHHHHHHHHHHhChHHHHH----HHHHHHHHhcCCC---hHHHHHHHHHHHH
Confidence 111123444 44656 679998887778888887 44554433 3333444454332 1223456666666
Q ss_pred HhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcC
Q 046316 643 LLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGG 690 (966)
Q Consensus 643 l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~ 690 (966)
+-.+.+.- +.-.+|.++.++. ..|.-+..++.+.|.++....
T Consensus 171 lGen~~~y-----v~PfLprL~aLL~-D~deiVRaSaVEtL~~lA~~n 212 (253)
T 2db0_A 171 MGENSFKY-----VNPFLPRIINLLH-DGDEIVRASAVEALVHLATLN 212 (253)
T ss_dssp CCTTTHHH-----HGGGHHHHHGGGG-CSSHHHHHHHHHHHHHHHTSC
T ss_pred HhccCccc-----cCcchHHHHHHHc-CcchhhhHHHHHHHHHHHHcC
Confidence 55554322 2223677788764 566778889999999887763
No 93
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=88.04 E-value=1.1 Score=40.67 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHH
Q 046316 413 WWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSA 492 (966)
Q Consensus 413 ~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~ 492 (966)
+|..|.+++.++|.+.+ + .+.. | ...++ ++++.+|..|+|.+|++.. + ..++.
T Consensus 25 ~~~vR~~A~~~L~~~~~-----------~-~~~~-L----~~~L~---d~~~~vR~~A~~aL~~~~~---~----~a~~~ 77 (131)
T 1te4_A 25 NKWVRRDVSTALSRMGD-----------E-AFEP-L----LESLS---NEDWRIRGAAAWIIGNFQD---E----RAVEP 77 (131)
T ss_dssp CCCSSSSCCSSTTSCSS-----------T-THHH-H----HHGGG---CSCHHHHHHHHHHHGGGCS---H----HHHHH
T ss_pred CHHHHHHHHHHHHHhCc-----------h-HHHH-H----HHHHc---CCCHHHHHHHHHHHHhcCC---H----HHHHH
Confidence 35667777777776532 1 1222 2 23444 7889999999999999853 1 33555
Q ss_pred HHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHH
Q 046316 493 AITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETL 555 (966)
Q Consensus 493 ~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l 555 (966)
++..|. +.+..||..|+.+|..+-. +..+..|..++++.+..+...+.++|
T Consensus 78 L~~~L~-d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 78 LIKLLE-DDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHH-HCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 556655 4578899999999998742 23456666677655545555555554
No 94
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=88.00 E-value=2.9 Score=42.27 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=82.6
Q ss_pred HHHHHhhhcCCCCC--cEehhHHHHHHhhcccC--CCCCccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-h
Q 046316 490 LSAAITTIAMDVPP--PVKVGACRALSELLPKA--NKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-L 564 (966)
Q Consensus 490 l~~~~~~L~~~~~~--~Vr~~A~~al~~~~~~~--~~~~l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~ 564 (966)
++.+++.|.++ +. -++..|+.++.+++... .+..+.. ...+..|.+++.....+....+..+|..+...++ .
T Consensus 10 i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~--~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 10 LERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQ--LRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp HHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHH--TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 45677777754 34 67888999999887542 1112211 1234667777777667778888888887765432 1
Q ss_pred hhc-ccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhh
Q 046316 565 TAS-MEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPIL 622 (966)
Q Consensus 565 ~~~-~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l 622 (966)
... ...--+|.++++ .+...++.++..+..+|-.|+..+..-..+.+..+|.+...+
T Consensus 87 k~~I~~~GaI~~Lv~l-L~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll 144 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQV-LKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENI 144 (233)
T ss_dssp HHHHHHTTHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCCHHHHHHH-HccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHH
Confidence 111 112345888888 444557778888888888888766655555566788777654
No 95
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=87.72 E-value=35 Score=37.75 Aligned_cols=222 Identities=16% Similarity=0.135 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccC-----c----H-HHHHHHHhhhcc--cccc----------ccccCC
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQ-----P----A-AVLLKHFIKKHW--QEGE----------ESFELP 67 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~-----p----A-~i~LKn~I~~~W--~~~~----------~~~~~~ 67 (966)
.|..-+.++|...-|+|+..|..-..-|..+... + + .=.|-++|...= ..-. ..| ..
T Consensus 159 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGf-a~ 237 (449)
T 2npp_B 159 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF-AL 237 (449)
T ss_dssp SCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSC-CS
T ss_pred CCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcc-CC
Confidence 4666788899999999999999999999876653 1 1 122333332100 0000 012 23
Q ss_pred CCChHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhccc---CchhhHhHHHHHHHHHH
Q 046316 68 AVSSEEKEVIRKLLLSSLDD-THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQ---SNMNGVHGGLRCLALLS 143 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~-~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~---~~~~~~~~aL~~L~~l~ 143 (966)
++.++-|..+.+.|+.+... .-+.--.++++|+.+....| |.|...++..|-.. ++...-..-|.-|.+++
T Consensus 238 PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-----p~L~~~vi~~LLk~WP~tns~KevlFL~eleeil 312 (449)
T 2npp_B 238 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-----STLTEPVVMALLKYWPKTHSPKEVMFLNELEEIL 312 (449)
T ss_dssp SCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC-----cHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 68899999988888887643 33455679999999988765 56666666665311 23333334555666777
Q ss_pred hhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcC
Q 046316 144 ADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEH 223 (966)
Q Consensus 144 ~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~ 223 (966)
+-+..++|..+...+|..+-+.+++++ .++-.+|+.++..= ..-.++.++-...++.+...|..
T Consensus 313 e~~~~~ef~~i~~~lF~~la~ci~S~h---fqVAErAL~~w~N~-------------~i~~li~~n~~~IlPii~p~L~~ 376 (449)
T 2npp_B 313 DVIEPSEFVKIMEPLFRQLAKCVSSPH---FQVAERALYYWNNE-------------YIMSLISDNAAKILPIMFPSLYR 376 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCSC---HHHHHHHHGGGGCH-------------HHHHHHHTTHHHHHHHHHHHHTS
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHCCH-------------HHHHHHHhchhhhHHhhHHHHHH
Confidence 777778899999999999999998864 45555555543321 11122233333344444444433
Q ss_pred CCCCCCCChh--hHHHHHHHHHHHHHHhcchhhHHh
Q 046316 224 PVQPEDPDDW--GVKMEVLKCLNQFIQNFPSLAESE 257 (966)
Q Consensus 224 ~~~~~d~~~~--~lk~~~~~~L~~l~~~f~~~~~~~ 257 (966)
.. ...| .++..++.++..+.+--++.+...
T Consensus 377 ~s----~~HWn~~V~~la~~vlk~l~e~d~~lf~~c 408 (449)
T 2npp_B 377 NS----KTHWNKTIHGLIYNALKLFMEMNQKLFDDC 408 (449)
T ss_dssp CT----TCCSSTTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HH----HHhcCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 21 1234 588888888877666666655433
No 96
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=87.24 E-value=7.8 Score=42.28 Aligned_cols=223 Identities=16% Similarity=0.132 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccC-c---------HHHHHHHHhhhcc--cccc----------ccccCC
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQ-P---------AAVLLKHFIKKHW--QEGE----------ESFELP 67 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~-p---------A~i~LKn~I~~~W--~~~~----------~~~~~~ 67 (966)
.|..-+.++|...-|+|+..|.....-|..+... . ..=.|-++|...= ..-. ..| ..
T Consensus 126 id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGf-a~ 204 (403)
T 3fga_B 126 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF-AL 204 (403)
T ss_dssp SCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC-CS
T ss_pred cCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHccc-CC
Confidence 4555688899989999999999999988876553 1 0011222221100 0000 011 23
Q ss_pred CCChHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcc---cCchhhHhHHHHHHHHHH
Q 046316 68 AVSSEEKEVIRKLLLSSLDD-THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITD---QSNMNGVHGGLRCLALLS 143 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~-~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s---~~~~~~~~~aL~~L~~l~ 143 (966)
++.++-|..+.+.|+.+-.. .-+.--.++++|+.+....| |.|...++..|-. .++...-..=|.-+.+++
T Consensus 205 PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD-----p~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iL 279 (403)
T 3fga_B 205 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-----STLTEPVVMALLKYWPKTHSPKEVMFLNELEEIL 279 (403)
T ss_dssp SCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC-----chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 68889999988888887643 23455579999999999877 4555555555521 123333334555566777
Q ss_pred hhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcC
Q 046316 144 ADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEH 223 (966)
Q Consensus 144 ~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~ 223 (966)
+-+..++|..+...+|..+-..+++++ .++-.+|+.++..= . .-..+.++-...++.+...|..
T Consensus 280 e~~~~~~f~~i~~~lf~~la~ci~S~h---fqVAErAL~~wnNe-~------------i~~li~~n~~~IlPii~p~L~~ 343 (403)
T 3fga_B 280 DVIEPSEFVKIMEPLFRQLAKCVSSPH---FQVAERALYYWNNE-Y------------IMSLISDNAAKILPIMFPSLYR 343 (403)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCSC---HHHHHHHHGGGGCH-H------------HHHHHHTTHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHhccH-H------------HHHHHHHhHHHHHHHHHHHHHH
Confidence 777777899999999999999998874 45555565544320 1 1112222222333333333322
Q ss_pred CCCCCCCChh--hHHHHHHHHHHHHHHhcchhhHHhh
Q 046316 224 PVQPEDPDDW--GVKMEVLKCLNQFIQNFPSLAESEF 258 (966)
Q Consensus 224 ~~~~~d~~~~--~lk~~~~~~L~~l~~~f~~~~~~~~ 258 (966)
.. ...| .++..++.++..+.+--++.|....
T Consensus 344 ~~----~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~ 376 (403)
T 3fga_B 344 NS----KTHWNKTIHGLIYNALKLFMEMNQKLFDDCT 376 (403)
T ss_dssp TT----SCCSCHHHHHHHHHHHHHHHTTSCCCCCTTH
T ss_pred HH----HHccCHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 10 1235 5778888888777766666555443
No 97
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=86.22 E-value=24 Score=36.16 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=83.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhh
Q 046316 66 LPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSAD 145 (966)
Q Consensus 66 ~~~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~ 145 (966)
++.+++.+-..+=-.|+.=++++..++|.++-.++..+... ||- .-+++.+.+.+.+. |...+.++|.++..+.+.
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-~~~--~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-VGP--LKMTPMLLDALKSK-NARQRSECLLVIEYYITN 197 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-HCH--HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-CCH--HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh
Confidence 34677777666666777777889899999999999888765 451 23788888889885 788999999999999887
Q ss_pred ccccchhhhhhhHH---HHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Q 046316 146 LDDAIVPKLVPVLF---PVLHTIVSFPESYDRYVRTKALSIVYSCTA 189 (966)
Q Consensus 146 l~~~~~~~i~~~l~---p~L~~i~~~~~~~~~~~r~~al~i~~~~~~ 189 (966)
.... + ...+ |.+...+.+. +..+|..|+.+.-.+..
T Consensus 198 ~G~~--~---~~~l~~~~~ia~ll~D~---d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 198 AGIS--P---LKSLSVEKTVAPFVGDK---DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HCSG--G---GGGGCHHHHHGGGGGCS---SHHHHHHHHHHHHHHHH
T ss_pred cCCC--c---cccccchHHHHHHHcCC---CHHHHHHHHHHHHHHHH
Confidence 6543 1 2345 8888888754 47899988876555443
No 98
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=86.15 E-value=1.6 Score=39.65 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=63.4
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccchhhhhhhH
Q 046316 79 KLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVL 158 (966)
Q Consensus 79 ~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l 158 (966)
..|+..|.+++..+|..++.+++.|.. ++.++.|...+.+. ++..+..|..+|..+.+ +..
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~-----------~~a 105 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD-------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----------ERV 105 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS-------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----------HHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHH
Confidence 667888899999999999999998863 46788888999874 88888999999887642 345
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHH
Q 046316 159 FPVLHTIVSFPESYDRYVRTKALSI 183 (966)
Q Consensus 159 ~p~L~~i~~~~~~~~~~~r~~al~i 183 (966)
+|.|...+.+. +..+|..|...
T Consensus 106 ~~~L~~~l~d~---~~~vr~~A~~a 127 (131)
T 1te4_A 106 RAAMEKLAETG---TGFARKVAVNY 127 (131)
T ss_dssp HHHHHHHTTSC---CTHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHH
Confidence 67777777643 35677665543
No 99
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=84.24 E-value=79 Score=38.00 Aligned_cols=276 Identities=12% Similarity=0.075 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhh--cChh-hHHHHHHHHHHHHhh
Q 046316 485 VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQ--ARDE-TLHLVLETLQAAIKA 561 (966)
Q Consensus 485 ~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~--~~~d-~l~~~le~l~~~i~~ 561 (966)
....+++.++.++.+. +..+...+..|++.++-..+ ....-.+|.+++.+..-++. ..+. -+..+|+++..++..
T Consensus 336 fV~~l~p~~~~g~fSK-~~~~~~~~~~~l~~La~l~P-~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~ 413 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNK-NPDIANYYISCFAYLLELDP-SNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRF 413 (799)
T ss_dssp HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTCC-TTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhCcC-CcchHHHHHHHHHHHHhcCC-CccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHH
Confidence 3444555666666543 45566778888888875421 01112456677877777766 4432 445556666555432
Q ss_pred cchhhcccccchHHHHHHHHhh--cCChhHHHHHHHHHHHHHcC-CC-------cHHHHHHhhhcchHhhhc---CCC--
Q 046316 562 GFLTASMEPMISPLILNIWALH--VSDPFISIDAIEVLEAIKCS-PG-------CIHQLASRILPYVGPILN---NPQ-- 626 (966)
Q Consensus 562 ~~~~~~~~~~l~p~~l~l~~~~--~~d~~~~~~~~~~l~~l~~~-~~-------~~~~l~~~~lP~l~~~l~---~~~-- 626 (966)
-.....|-..+.| ++.+.... .+|+.-...+..++..+.+. |- .+..+.....|.+...+. .+.
T Consensus 414 lv~~~~yr~hl~~-lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (799)
T 1vsy_4 414 IVMDKLYRVHITN-VLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESS 492 (799)
T ss_dssp HTTSTTGGGHHHH-HHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCS
T ss_pred HhcCcccHHHHHH-HHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcccccc
Confidence 1111122234544 33342333 68888888888888888732 21 222122222333333321 111
Q ss_pred --CCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcch
Q 046316 627 --QQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFT 704 (966)
Q Consensus 627 --~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~ 704 (966)
.+.....+ ...++.+...+.. ++...+..++.++.+..+..+......++..++...++. .
T Consensus 493 ~~~~~d~~~~------~~~~~~sT~~f~~-~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~----------i 555 (799)
T 1vsy_4 493 KTFRVDDELL------NNAFKASTTVFQS-MLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDK----------I 555 (799)
T ss_dssp SSCCCCTTHH------HHHHHHHTSTHHH-HHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHH----------H
T ss_pred ccccccHHHH------HHHHHHHHhhHHH-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHH----------H
Confidence 11111111 1222333334444 456667888888876555555544444455555554433 3
Q ss_pred HHHHHHHHHhhcCCCCCCccccchHHH----HHHHHHhCChhhhHhHHHHHHHHHHHHHHh--------h---hHHHHHH
Q 046316 705 MRSLLDAASRLLNPDLESSGSLFVGSY----ILQLILHLPSQMAQHIRDLVAALVRRLQSA--------Q---IAGLRSS 769 (966)
Q Consensus 705 l~~il~i~~~lL~~~~~~~~~~~vg~L----v~~li~~~~~~l~~~l~~iL~a~~~rL~~~--------~---~~~~~~~ 769 (966)
.+.+++-+.+....+...+++-.+|.| +..+...-|..+..++|.+...+...+... + .......
T Consensus 556 f~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w 635 (799)
T 1vsy_4 556 FNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVL 635 (799)
T ss_dssp HHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHH
Confidence 344454444444334444566688888 777777755523445555554443322111 1 1234555
Q ss_pred HHHHHHHHHhh
Q 046316 770 LLLIFARLVHM 780 (966)
Q Consensus 770 li~vfa~l~~~ 780 (966)
.+.+++.++.+
T Consensus 636 ~l~iL~~~v~~ 646 (799)
T 1vsy_4 636 YLTALNDVLRN 646 (799)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 66677777665
No 100
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=83.31 E-value=17 Score=35.41 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhc--ChhhHHHHHHHHHHHHhhc
Q 046316 485 VLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQA--RDETLHLVLETLQAAIKAG 562 (966)
Q Consensus 485 ~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~--~~d~l~~~le~l~~~i~~~ 562 (966)
-.+.||+.+.+.+.. ..|..|...++ .+ ..++|.+|-+++-+..-.... +-+.+..+|+.+...+.-.
T Consensus 8 Elq~yf~~It~a~~~----~~r~~aL~sL~---~D---~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~ 77 (196)
T 4atg_A 8 ELQLYFDKILSMIKS----DMKDIAIECLE---KE---SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK 77 (196)
T ss_dssp HHHHHHHHHHHHHTS----TTHHHHHHHHH---HC---SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHh----HHHHHHHHHHh---cC---CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence 367888888888763 44655555554 33 234555554444444433222 3356777787777777644
Q ss_pred c-hhhcccccchHHHHHHHH-hhcCChhHHHHHHHHHHHHHc-CCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHH
Q 046316 563 F-LTASMEPMISPLILNIWA-LHVSDPFISIDAIEVLEAIKC-SPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDL 639 (966)
Q Consensus 563 ~-~~~~~~~~l~p~~l~l~~-~~~~d~~~~~~~~~~l~~l~~-~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~l 639 (966)
. +...|..+++|.++.... +......+|..|-.++..++. .+..|..+..++.-++.+++.++.. ...-...|+-.
T Consensus 78 ~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~-~l~t~YGAi~G 156 (196)
T 4atg_A 78 HVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNR-SEDSQYGALYC 156 (196)
T ss_dssp TCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTS-CHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCC-ChHHHHHHHHH
Confidence 4 666777889998887743 333333788889999999984 4777888889999999998876542 22334455544
Q ss_pred HHH
Q 046316 640 LTM 642 (966)
Q Consensus 640 l~~ 642 (966)
+..
T Consensus 157 L~~ 159 (196)
T 4atg_A 157 LSI 159 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 101
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=79.31 E-value=67 Score=33.87 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHhcc---------CCCCccchHHHHHHHhcccCchhhHhHHHHHHH
Q 046316 74 KEVIRKLLLSSL----DDTHRKICTAISMAVASIAAYD---------WPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLA 140 (966)
Q Consensus 74 K~~IR~~Ll~~L----~~~~~kIr~~~a~~Is~Ia~~D---------~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~ 140 (966)
.+..++.++..| ..-+-.-|+.++.+.+.+.+.. |-..+|+++..|+..-.++ +.....|. .|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~-diAl~~G~--mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP-EIALNCGI--MLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST-TTHHHHHH--HHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccc-hhHhHHHH--HHH
Confidence 444555555543 2334556777777777776543 4446899999999988764 43333332 244
Q ss_pred HHHhhccccchhh--hhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHH
Q 046316 141 LLSADLDDAIVPK--LVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFS 218 (966)
Q Consensus 141 ~l~~~l~~~~~~~--i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~ 218 (966)
+.++. +.+.. +-...|-.++..++.+ +-++-+-|...|+.++. .|+.-+.+|+...+..++..+.
T Consensus 149 ecir~---e~la~~iL~~~~f~~fF~yv~~~---~FdiasDAf~TfkelLt-------~Hk~lvaefL~~nyd~Ff~~y~ 215 (341)
T 1upk_A 149 ECIRH---EPLAKIILWSEQFYDFFRYVEMS---TFDIASDAFATFKDLLT-------RHKLLSAEFLEQHYDRFFSEYE 215 (341)
T ss_dssp HHHTS---HHHHHHHHHSGGGGHHHHHTTCS---SHHHHHHHHHHHHHHHH-------SSHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHh---HHHHHHHhccHHHHHHHHHhcCC---CchHHHHHHHHHHHHHh-------ccHHHHHHHHHHhHHHHHHHHH
Confidence 44432 11100 0011233444555443 35666667777776543 3666678899999999999999
Q ss_pred HHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcc--hhhHHhh
Q 046316 219 IILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFP--SLAESEF 258 (966)
Q Consensus 219 ~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~--~~~~~~~ 258 (966)
++|+. +.+-.|.+.+|.|+.+...-. ..+..|+
T Consensus 216 ~Ll~S-------~NYVTkRQSlKLLgelLldr~N~~vM~~Yi 250 (341)
T 1upk_A 216 KLLHS-------ENYVTKRQSLKLLGELLLDRHNFTIMTKYI 250 (341)
T ss_dssp HHTTC-------SSHHHHHHHHHHHHHHHHSGGGHHHHHHHT
T ss_pred HHhcC-------CcchhHHHHHHHHHHHHhCchHHHHHHHHh
Confidence 98876 468899999999999987644 3455554
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=78.88 E-value=18 Score=40.94 Aligned_cols=174 Identities=9% Similarity=0.028 Sum_probs=107.7
Q ss_pred cccCCccchhhHHHHHHHHHHHHhCh-----------hhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhH
Q 046316 360 DEDESTYSCRVSGALLLEEVVSYCGR-----------EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLS 428 (966)
Q Consensus 360 de~d~~~s~R~aa~~lL~~L~~~~~~-----------~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~ 428 (966)
|-.+..|.+|.-|+--|.++.+.-|. -++..++-+...+|..+. ++..--..||+|-.++|++
T Consensus 182 DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYV-----SDqVVAPVRETaAQtLGaL- 255 (800)
T 3oc3_A 182 NLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFV-----DDRTVAPVRDAAAYLLSRI- 255 (800)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCS-----SSSCBCHHHHHHHHHHHHH-
T ss_pred HhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccc-----cCeeeeehHHHHHHHHHHH-
Confidence 33445799999999999999887652 123334444444554442 1223357899999999998
Q ss_pred HHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehh
Q 046316 429 EQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVG 508 (966)
Q Consensus 429 ~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~ 508 (966)
..+ .. .+++ +.+.+. .+. .+.=-+|--++.-+-.+.+.+. + +..++++++.+|. |.+.=||..
T Consensus 256 ~hL----p~---e~~I---L~qLV~-~l~---~~~WEVRHGGLLGLKYL~DLL~-~-Ld~Vv~aVL~GL~-D~DDDVRAV 318 (800)
T 3oc3_A 256 YPL----IG---PNDI---IEQLVG-FLD---SGDWQVQFSGLIALGYLKEFVE-D-KDGLCRKLVSLLS-SPDEDIKLL 318 (800)
T ss_dssp TTT----SC---SCCH---HHHHTT-GGG---CSCHHHHHHHHHHHHHTGGGCC-C-HHHHHHHHHHHTT-CSSHHHHHH
T ss_pred HhC----Ch---hHHH---HHHHHh-hcC---CCCeeehhhhHHHHHHHHHHHH-H-HHHHHHHHHhhcC-CcccHHHHH
Confidence 432 11 1443 444442 222 2223334334444433322233 2 7788999999987 446679999
Q ss_pred HHHHHHhhcccCCCCCccccHHHHHHHHHHHHhhcCh--hhHHHHHHHHHHHHhhcc
Q 046316 509 ACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARD--ETLHLVLETLQAAIKAGF 563 (966)
Q Consensus 509 A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~--d~l~~~le~l~~~i~~~~ 563 (966)
|+.+|..++ ....+..++..+...+.+.++ -....+|+-|...++...
T Consensus 319 AAetLiPIA-------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~ 368 (800)
T 3oc3_A 319 SAELLCHFP-------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP 368 (800)
T ss_dssp HHHHHTTSC-------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT
T ss_pred HHHHhhhhc-------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc
Confidence 999998776 235578888999988887633 256677888877777543
No 103
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.80 E-value=1.1e+02 Score=37.30 Aligned_cols=286 Identities=10% Similarity=0.120 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhc-CCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHH
Q 046316 414 WRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIG-TGVHQYPFLYARIFASVARFSSAISDGVLEHFLSA 492 (966)
Q Consensus 414 w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~-~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~ 492 (966)
--.|-+|++++|.+..+..+ +.-.+|..++...-. .+...++.+|..|+.-+|...-.... ..+++.
T Consensus 409 ~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~---eev~e~ 476 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN---IEVYEA 476 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC---HHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC---HHHHHH
Confidence 46788999999988643211 123345554432100 00011478898899999975433211 234555
Q ss_pred HHhhhcCCCCCcEehhHHHHHHhhc-ccCCCCCccccHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhcchhhcccc
Q 046316 493 AITTIAMDVPPPVKVGACRALSELL-PKANKGNFQPQMMGLFSSLADLLHQARDE-TLHLVLETLQAAIKAGFLTASMEP 570 (966)
Q Consensus 493 ~~~~L~~~~~~~Vr~~A~~al~~~~-~~~~~~~l~p~l~~il~~L~~ll~~~~~d-~l~~~le~l~~~i~~~~~~~~~~~ 570 (966)
+...|..+ +..+|..|+.|+.-.. -.++ ..+++.|++.+.+.+.| ....+...|.-+.-.. .
T Consensus 477 L~~~L~dd-~~~~~~~AalALGli~vGTgn--------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~-------~ 540 (963)
T 4ady_A 477 LKEVLYND-SATSGEAAALGMGLCMLGTGK--------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGR-------Q 540 (963)
T ss_dssp HHHHHHTC-CHHHHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-------G
T ss_pred HHHHHhcC-CHHHHHHHHHHHhhhhcccCC--------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC-------h
Confidence 55666534 3466777888887643 2222 24445666655554443 4444444454432111 2
Q ss_pred cchHHHHHHHHhhcCChhHHHHHHHHHHHH-HcCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCCh
Q 046316 571 MISPLILNIWALHVSDPFISIDAIEVLEAI-KCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAST 649 (966)
Q Consensus 571 ~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l-~~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~ 649 (966)
+-++.+++. .....||.+|..+.-++.-- ++... ....+.++..+. ... .......|+--|+.+.-+-+
T Consensus 541 e~~~~li~~-L~~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~~---~d~---~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 541 ELADDLITK-MLASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVAV---SDS---NDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp GGGHHHHHH-HHHCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHHH---HCS---CHHHHHHHHHHHHHHTSSSC-
T ss_pred HHHHHHHHH-HHhCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHhc---cCC---cHHHHHHHHHHHHhhccCCH-
Confidence 345777777 44578999887654433211 12222 111222222222 111 11233455555555443333
Q ss_pred hHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccccchH
Q 046316 650 DVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVG 729 (966)
Q Consensus 650 ~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~~~vg 729 (966)
++ .|.++..+.++.++.+...+..+|.. +.. +++...+++++.+++..... ..+.++.
T Consensus 611 e~--------v~rlv~~L~~~~d~~VR~gAalALGl-i~a------------Gn~~~~aid~L~~L~~D~d~-~Vrq~Ai 668 (963)
T 4ady_A 611 TT--------VPRIVQLLSKSHNAHVRCGTAFALGI-ACA------------GKGLQSAIDVLDPLTKDPVD-FVRQAAM 668 (963)
T ss_dssp SS--------HHHHTTTGGGCSCHHHHHHHHHHHHH-HTS------------SSCCHHHHHHHHHHHTCSSH-HHHHHHH
T ss_pred HH--------HHHHHHHHHhcCCHHHHHHHHHHHHH-hcc------------CCCcHHHHHHHHHHccCCCH-HHHHHHH
Confidence 22 24457777778888888887777753 222 22335677788888753322 1111111
Q ss_pred HHHHHHHH-hCChhhhHhHHHHHHHHHHHHHH
Q 046316 730 SYILQLIL-HLPSQMAQHIRDLVAALVRRLQS 760 (966)
Q Consensus 730 ~Lv~~li~-~~~~~l~~~l~~iL~a~~~rL~~ 760 (966)
+...++. .-.+...|.+.++++.+......
T Consensus 669 -~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 669 -IALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp -HHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred -HHHHHHhcCCccccchHHHHHHHHHHHHHhc
Confidence 1111111 11111345677777777666553
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=77.00 E-value=5.6 Score=47.51 Aligned_cols=58 Identities=9% Similarity=0.019 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHH-----HHHHHHHhhhcCCCCCcEehhHHHHHHhhcccC
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLE-----HFLSAAITTIAMDVPPPVKVGACRALSELLPKA 520 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~-----~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~ 520 (966)
++.+-.|..|||+++.+++. ++... ..+..++..+..|.+..||..|+.||++++.+.
T Consensus 45 S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp SSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 78899999999999999863 32222 234444444334667889999999999998653
No 105
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=76.64 E-value=35 Score=36.95 Aligned_cols=166 Identities=19% Similarity=0.172 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccC-----c----H-HHHHHHHhhhcccc-c-c----------ccccCC
Q 046316 10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQ-----P----A-AVLLKHFIKKHWQE-G-E----------ESFELP 67 (966)
Q Consensus 10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~-----p----A-~i~LKn~I~~~W~~-~-~----------~~~~~~ 67 (966)
.|..-+.+++...-|+|+..|..-..-|..+... + + .=.|-++|...=.. + . ..| ..
T Consensus 171 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngf-a~ 249 (392)
T 2jak_A 171 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF-AL 249 (392)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC-CS
T ss_pred CCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc-CC
Confidence 4566688899999999999999999988766542 1 1 11222333211000 0 0 011 23
Q ss_pred CCChHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhccc---CchhhHhHHHHHHHHHH
Q 046316 68 AVSSEEKEVIRKLLLSSLDD-THRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQ---SNMNGVHGGLRCLALLS 143 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~-~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~---~~~~~~~~aL~~L~~l~ 143 (966)
++.++-|..+.+.|+.+... .-+.--.++++|+.+....| |.|...++..|-.. ++...-.-=|.-+.+++
T Consensus 250 PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-----p~L~~~vi~~LLk~WP~tns~KevlFL~eleeiL 324 (392)
T 2jak_A 250 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-----STLTEPVVMALLKYWPKTHSPKEVMFLNELEEIL 324 (392)
T ss_dssp SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcC-----chhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 58889999988888888643 33556679999999998777 45666555555210 22223333455577777
Q ss_pred hhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 046316 144 ADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIV 184 (966)
Q Consensus 144 ~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~ 184 (966)
+-+..++|..+...+|..+-+.+++++ .++-.+|+.++
T Consensus 325 e~~~~~~f~~i~~~lF~~la~ci~S~h---fqVAErAL~~w 362 (392)
T 2jak_A 325 DVIEPSEFVKIMEPLFRQLAKCVSSPH---FQVAERALYYW 362 (392)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHTCSS---HHHHHHHHGGG
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHh
Confidence 777778899999999999999998864 45555555544
No 106
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=74.85 E-value=79 Score=38.01 Aligned_cols=100 Identities=8% Similarity=0.103 Sum_probs=60.4
Q ss_pred CCChhHHHHHHHHHHHhhhhcC---hhHHHHHHHHHHhhhcCC-CCCcEeh-hHHHHHHhhcccC-CCCCccccHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAIS---DGVLEHFLSAAITTIAMD-VPPPVKV-GACRALSELLPKA-NKGNFQPQMMGLFS 534 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~---~~~~~~~l~~~~~~L~~~-~~~~Vr~-~A~~al~~~~~~~-~~~~l~p~l~~il~ 534 (966)
+.++-+...+.-++..++-.-| .-.+..+++.+..+|... -..+=|. +|.+++..++... .....++++.+++.
T Consensus 350 SK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~ 429 (799)
T 1vsy_4 350 NKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLS 429 (799)
T ss_dssp CSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 6777778888888888887666 556667777777776530 1122233 4677777766542 23456778887777
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHHHh
Q 046316 535 SLADLLHQARDETLHLVLETLQAAIK 560 (966)
Q Consensus 535 ~L~~ll~~~~~d~l~~~le~l~~~i~ 560 (966)
.++.-+.-.+-.--..++..+..++.
T Consensus 430 l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 430 MLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCcccHHHHHHHHHHHHHHHH
Confidence 76665544444333444555555543
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=73.95 E-value=7 Score=39.14 Aligned_cols=125 Identities=13% Similarity=0.142 Sum_probs=78.1
Q ss_pred CccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCcccc
Q 046316 364 STYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVR 443 (966)
Q Consensus 364 ~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~ 443 (966)
+.|++|..|..+|..+ . ....+++++...+.. ..+|+.+|.+-.+++-++... . +-.
T Consensus 83 ~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~---------D~~WrVre~lA~a~~~~~~~~--~------pe~ 139 (240)
T 3l9t_A 83 DVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSK---------DNNWRVQEVLAKAFDEFCKKI--E------YKK 139 (240)
T ss_dssp SSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGG---------CSCHHHHHHHHHHHHHHHHHH--C------TTT
T ss_pred cchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCC---------CCCccHHHHHHHHHHHHHHhc--C------HHH
Confidence 3689999999987766 2 135677777765542 347999999988888765311 1 111
Q ss_pred HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcC-hhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhccc
Q 046316 444 LGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAIS-DGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPK 519 (966)
Q Consensus 444 ~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~-~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~ 519 (966)
..+.+.. -.+ ++++.+|+-|.-..--|+.... ......+++ ++..+..|.+.-||-+-+.+|+.+...
T Consensus 140 ~l~~~~~----W~~---d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~-iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 ALPIIDE----WLK---SSNLHTRRAATEGLRIWTNRPYFKENPNEAIR-RIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp THHHHHH----HHH---CSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHH-HHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH----Hhc---CCCHHHHHHHHHhhHHHhccchhhcCHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 1111222 223 7899999998866555654311 122223333 445556677888999988899887765
No 108
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=72.65 E-value=29 Score=35.68 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=72.5
Q ss_pred hhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccccc--hhhhhhhHHHHH
Q 046316 85 LDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAI--VPKLVPVLFPVL 162 (966)
Q Consensus 85 L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~~~--~~~i~~~l~p~L 162 (966)
|.++..++|..+..++..++....|. ..+++.+...+.+. ++..+.+++.+|..+++++.... ....++.+++.+
T Consensus 112 l~~~k~~~~~~a~~~l~~~~~~~~~~--~~~~e~l~~~l~~K-npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l 188 (278)
T 4ffb_C 112 LTSSRATTKTQSMSCILSLCGLDTSI--TQSVELVIPFFEKK-LPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHV 188 (278)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTSSSS--HHHHHHHGGGGGCS-CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGH
T ss_pred hcCccHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHH
Confidence 45677889988888888887766553 24677788888774 89999999999999999876533 234556677777
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHH
Q 046316 163 HTIVSFPESYDRYVRTKALSIVYSCT 188 (966)
Q Consensus 163 ~~i~~~~~~~~~~~r~~al~i~~~~~ 188 (966)
...+.+. +..+|..|.+++..+.
T Consensus 189 ~k~l~d~---~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 189 PQLAGHG---DRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHTCS---SHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---cHHHHHHHHHHHHHHH
Confidence 7778654 4789998888665543
No 109
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=69.71 E-value=1.3e+02 Score=32.67 Aligned_cols=115 Identities=12% Similarity=0.160 Sum_probs=70.4
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHHHHHcC--CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHH-----HHHh
Q 046316 572 ISPLILNIWALHVSDPFISIDAIEVLEAIKCS--PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLL-----TMLL 644 (966)
Q Consensus 572 l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~--~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll-----~~l~ 644 (966)
++..+++.|- ..++.--..-++-++.+... |..+..++..+...+..++.++. ....+.|+.+| ..++
T Consensus 252 vi~~LLk~WP--~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~h---fqVAErAL~~wnNe~i~~li 326 (403)
T 3fga_B 252 VVMALLKYWP--KTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH---FQVAERALYYWNNEYIMSLI 326 (403)
T ss_dssp HHHHHHHTCC--SSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC---HHHHHHHHGGGGCHHHHHHH
T ss_pred HHHHHHHhCC--CCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHhccHHHHHHH
Confidence 3455555552 23443223334445555533 55778888888888888888763 34566777666 2233
Q ss_pred hcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCcccee
Q 046316 645 KSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLML 695 (966)
Q Consensus 645 ~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~ 695 (966)
..- ...++..+||+|.+.....|...+...+..+++-+...+++-|-
T Consensus 327 ~~n----~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~ 373 (403)
T 3fga_B 327 SDN----AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFD 373 (403)
T ss_dssp HTT----HHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHh----HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 222 22333444677777666678888888888888888887776653
No 110
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=67.98 E-value=97 Score=31.48 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHHHHhhh----chHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHh
Q 046316 70 SSEEKEVIRKLLLSSLDD----THRKIC-TAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSA 144 (966)
Q Consensus 70 ~~~~K~~IR~~Ll~~L~~----~~~kIr-~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~ 144 (966)
.+|..+.-|+.+..+|.+ ++ ..+ .++..+=.-+...| |.-.|++++.+++...+ .+.....-+...+.+.|+
T Consensus 6 ~~~~~~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~d-p~ll~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~~~ 82 (257)
T 3gs3_A 6 TDEKTATARAKVVDWCNELVIASP-STKCELLAKVQETVLGSC-AELAEEFLESVLSLAHD-SNMEVRKQVVAFVEQVCK 82 (257)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTT-GGGHHHHHHHHHGGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccC-HhHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHH
Confidence 455667778888888743 33 233 33344333344445 88888999999886544 354455555555666664
Q ss_pred hccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHH----HHHHHHHHH
Q 046316 145 DLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALS----IVYSCTAML 191 (966)
Q Consensus 145 ~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~----i~~~~~~~l 191 (966)
.- ..+++..++.|..++.+. ++.+.++++. +|+.++..+
T Consensus 83 ~k-----~~l~~~~l~~L~~Ll~d~---d~~V~K~~I~~~~~iY~~~l~~i 125 (257)
T 3gs3_A 83 VK-----VELLPHVINVVSMLLRDN---SAQVIKRVIQACGSIYKNGLQYL 125 (257)
T ss_dssp HC-----GGGHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 357788899998888743 3555444443 455555443
No 111
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.08 E-value=36 Score=41.49 Aligned_cols=88 Identities=9% Similarity=0.002 Sum_probs=56.4
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLL 540 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll 540 (966)
+....+|+.|...+|...-.- ++. ...++..|....+..||..|+.|+..++... | .+.+++.|..++
T Consensus 589 d~~d~VRraAViaLGlI~~g~-~e~----v~rlv~~L~~~~d~~VR~gAalALGli~aGn------~-~~~aid~L~~L~ 656 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLLRD-YTT----VPRIVQLLSKSHNAHVRCGTAFALGIACAGK------G-LQSAIDVLDPLT 656 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSS-CSS----HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS------C-CHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhccCC-HHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhccCC------C-cHHHHHHHHHHc
Confidence 455677777777777653321 222 2334444544456778888888888766432 1 156667777888
Q ss_pred hhcChhhHHHHHHHHHHHHh
Q 046316 541 HQARDETLHLVLETLQAAIK 560 (966)
Q Consensus 541 ~~~~~d~l~~~le~l~~~i~ 560 (966)
.+.+.++...++.++..+..
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHST
T ss_pred cCCCHHHHHHHHHHHHHHhc
Confidence 88888888888888876643
No 112
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=66.62 E-value=31 Score=33.50 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHhhcchhhcccccchHHHHHHH----HhhcCChhHHHHHHHHHHHHHcCCC-cHHHHHHhhhcchHhh
Q 046316 547 TLHLVLETLQAAIKAGFLTASMEPMISPLILNIW----ALHVSDPFISIDAIEVLEAIKCSPG-CIHQLASRILPYVGPI 621 (966)
Q Consensus 547 ~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~----~~~~~d~~~~~~~~~~l~~l~~~~~-~~~~l~~~~lP~l~~~ 621 (966)
....+++++..--|. ++++|++.+-. ..+.+|.......+.+.++|..+|. ...++...++|.+..+
T Consensus 24 ~r~~aL~sL~~D~gL--------~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 24 MKDIAIECLEKESGL--------QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp THHHHHHHHHHCSSC--------TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCh--------hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 345556665443332 35677766443 4455676666777889999998877 4577888999999888
Q ss_pred hcCCCCCCchhhHHHHHHHHHHhhcCC
Q 046316 622 LNNPQQQPDGLVAGSLDLLTMLLKSAS 648 (966)
Q Consensus 622 l~~~~~~~~~~~~~al~ll~~l~~~~~ 648 (966)
+-...-....+.+.|-++++.+++..+
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~ 122 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYS 122 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhC
Confidence 754322122577888999999887644
No 113
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=66.11 E-value=55 Score=33.99 Aligned_cols=134 Identities=14% Similarity=0.174 Sum_probs=68.6
Q ss_pred CccchHHHHHHHhccc------CchhhHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 046316 111 DWPDLLPFLLKLITDQ------SNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIV 184 (966)
Q Consensus 111 ~WP~Ll~~L~~~l~s~------~~~~~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~ 184 (966)
.||.++..+...|... .....+.+=|.++..+.++- .+|....-..+-.++.+. .....+|.+++.++
T Consensus 111 ~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~F~~~~m~~L~~ly~~~----~~d~~~k~Kvl~li 184 (315)
T 3qml_C 111 SFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS--EDLPIYSTVVLQNVYERN----NKDKQLQIKVLELI 184 (315)
T ss_dssp HCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--TTC--CCHHHHHHHHHHT----TTCHHHHHHHHHHH
T ss_pred hChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--HhhhhccHHHHHHHHccC----CCCHHHHHHHHHHH
Confidence 5888888887766431 11123333444444444332 234333333444444432 13567887777777
Q ss_pred HHHHHHHHhhh------ccchhHHHHhhHhhhHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHhcchhhHHh
Q 046316 185 YSCTAMLGVMS------GVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESE 257 (966)
Q Consensus 185 ~~~~~~l~~~~------~~~~~~~~~~~~~~l~~w~~~~~~~L~~~~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~ 257 (966)
..+... .... ...+.+... -.+-.+.|.+.|.++++... .+++.+ +..|..|..|.+.|++-+.+.
T Consensus 185 ~d~f~~-~~~~~~~~~~~~~kR~~e~-~~~~~q~w~~~~q~~iq~k~----~dE~~~-r~fF~~L~~ik~~~~~~lK~~ 256 (315)
T 3qml_C 185 SKILKA-DMYENDDTNLILFKRNAEN-WSSNLQEWANEFQEMVQNKS----IDELHT-RTFFDTLYNLKKIFKSDITIN 256 (315)
T ss_dssp HHHHHH-HTTC--------------------CHHHHHHHHHHHTCTT----SCHHHH-HHHHHHHHHHHHHHGGGSCCC
T ss_pred HHHccc-ccccccccccchhhhcccc-cCchHHHHHHHHHHHHhccc----cCHHHH-HHHHHHHHHHHHhcccccCCC
Confidence 665531 1111 011111111 12567789999999888632 244544 467999999999997654433
No 114
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=64.54 E-value=68 Score=32.80 Aligned_cols=134 Identities=8% Similarity=0.085 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHH
Q 046316 414 WRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAA 493 (966)
Q Consensus 414 w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~ 493 (966)
.+.--.+|-++..+...+.+. ......+....|+...| --++ ++..-+|..+--++-.+....++. .++..+
T Consensus 101 ~~v~~~~L~~L~~l~~~l~~~-~y~~~~~ea~~~lP~Lv-eKlG---d~k~~vR~~~r~il~~l~~v~~~~---~v~~~l 172 (266)
T 2of3_A 101 PAALIKVLELCKVIVELIRDT-ETPMSQEEVSAFVPYLL-LKTG---EAKDNMRTSVRDIVNVLSDVVGPL---KMTPML 172 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHH-HGGG---CSSHHHHHHHHHHHHHHHHHHCHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHH-HHhC---CChHHHHHHHHHHHHHHHHHCCHH---HHHHHH
Confidence 344556666666665554431 10011122233444333 2334 677778988888888777776654 456667
Q ss_pred HhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHH---HHHHHHHhhcChhhHHHHHHHHHHHHhh
Q 046316 494 ITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLF---SSLADLLHQARDETLHLVLETLQAAIKA 561 (966)
Q Consensus 494 ~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il---~~L~~ll~~~~~d~l~~~le~l~~~i~~ 561 (966)
++++.+. +..+|..++..+..+++..... | ...+ ..+.+++++.+..+...++.++++++..
T Consensus 173 ~~g~ksK-N~R~R~e~l~~l~~li~~~G~~---~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 173 LDALKSK-NARQRSECLLVIEYYITNAGIS---P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHGGGCS-CHHHHHHHHHHHHHHHHHHCSG---G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHccC-CHHHHHHHHHHHHHHHHhcCCC---c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7787644 6799999999999999863211 2 1234 6777888888888999999999988764
No 115
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=62.78 E-value=12 Score=37.66 Aligned_cols=103 Identities=16% Similarity=0.045 Sum_probs=68.6
Q ss_pred HHHHHhhhchH--HHHHHHHHHHHHHHhccCCCCc----cchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc--cch
Q 046316 80 LLLSSLDDTHR--KICTAISMAVASIAAYDWPEDW----PDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD--AIV 151 (966)
Q Consensus 80 ~Ll~~L~~~~~--kIr~~~a~~Is~Ia~~D~P~~W----P~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~--~~~ 151 (966)
.+++.|.+++. .++...+.++..++..+-+..+ -.-+|.|+++|.++ ++.....|..+|..+..+-++ ..+
T Consensus 12 ~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 12 RAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35667766555 7887778888888876633222 35789999999984 888888999999998864222 122
Q ss_pred hhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Q 046316 152 PKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSC 187 (966)
Q Consensus 152 ~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~ 187 (966)
. -..-+|.|.+++.+. .+..++..|..+++++
T Consensus 91 ~--~~GaI~~Lv~lL~~~--~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 91 A--ELNGVPRLLQVLKQT--RDLETKKQITGLLWNL 122 (233)
T ss_dssp H--HTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
T ss_pred H--HcCCHHHHHHHHccC--CCHHHHHHHHHHHHHH
Confidence 1 133578888888642 1356777666555543
No 116
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=62.39 E-value=1.2e+02 Score=31.89 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcC
Q 046316 590 SIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSA 647 (966)
Q Consensus 590 ~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~ 647 (966)
+.....|+.++.+.|.. ....++-.+.-.+..+. ....+.+|+++..++++.
T Consensus 147 ~ai~~~cF~al~~lp~~---~fklvidsiiWa~kH~~---r~V~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 147 QAVNSHCFPAFLAIPPT---QFKLVLDSIIWAFKHTM---RNVADTGLQILFTLLQNV 198 (321)
T ss_dssp HHHHHHCTTHHHHSCHH---HHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCHH---HHHHHHHHHHHHcCCCC---chHHHHHHHHHHHHHHHH
Confidence 33444556665555431 12233334444454432 356677888888888766
No 117
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=61.29 E-value=35 Score=35.87 Aligned_cols=180 Identities=13% Similarity=0.168 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHhhhcchHh-hhcCCCCCC-chhhHHHHHHHHHHhhcCCh---hHHHHHHHHHhHHHHH
Q 046316 591 IDAIEVLEAIKCSPGCIHQLASRILPYVGP-ILNNPQQQP-DGLVAGSLDLLTMLLKSAST---DVVKAAYDVCFDAVIR 665 (966)
Q Consensus 591 ~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~-~l~~~~~~~-~~~~~~al~ll~~l~~~~~~---~l~~~~~~~~fp~l~~ 665 (966)
...+.+++...+.......+.+.++|.+.. ++....... ..--.+.|.+++.++++.+. +..+.+++.+|.+-+.
T Consensus 47 keiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~ 126 (321)
T 1w9c_A 47 RETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLN 126 (321)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344555555554434445566677776654 443211100 11113567778888876552 3334456666666666
Q ss_pred HHhc--cCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhc---CCCCCCccccchHHHHHHHHHhCC
Q 046316 666 IILQ--SEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLL---NPDLESSGSLFVGSYILQLILHLP 740 (966)
Q Consensus 666 ~l~~--s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL---~~~~~~~~~~~vg~Lv~~li~~~~ 740 (966)
++.+ .+-++...+-...|+++..++.+.+++-. ++....+++.+---. .++++|.+ -+++..++.++.
T Consensus 127 MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp---~~~fklvidsiiWa~kH~~r~V~e~g----L~il~~ll~n~~ 199 (321)
T 1w9c_A 127 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIP---PTQFKLVLDSIIWAFKHTMRNVADTG----LQILFTLLQNVA 199 (321)
T ss_dssp HHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSC---HHHHHHHHHHHHHHTTCSSHHHHHHH----HHHHHHHHHHHH
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCC---HHHHHHHHHHHHHHcCCCCchHHHHH----HHHHHHHHHHHh
Confidence 6654 44578888889999999999888777531 233444554433112 12222222 244555566653
Q ss_pred --hhh-----hHhHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHH
Q 046316 741 --SQM-----AQHIRDLVAALVRRLQSAQI-AGLRSSLLLIFARLV 778 (966)
Q Consensus 741 --~~l-----~~~l~~iL~a~~~rL~~~~~-~~~~~~li~vfa~l~ 778 (966)
++. ..|.-.|++-++.-+..+.. ..+. .-..++++++
T Consensus 200 ~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~-~q~~iL~~lf 244 (321)
T 1w9c_A 200 QEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLT-MHASILAYMF 244 (321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHH-HHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHH-HHHHHHHHHH
Confidence 222 34566777777777666443 3332 2334555554
No 118
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=61.06 E-value=1.6e+02 Score=32.46 Aligned_cols=114 Identities=12% Similarity=0.176 Sum_probs=66.3
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHHHHHcC--CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHH-----HHh
Q 046316 572 ISPLILNIWALHVSDPFISIDAIEVLEAIKCS--PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLT-----MLL 644 (966)
Q Consensus 572 l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~--~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~-----~l~ 644 (966)
++..+++.|= ..++.--..-++-++.+... |..+..++..+...+..++.++. ....+.||.+|. .++
T Consensus 285 vi~~LLk~WP--~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~h---fqVAErAL~~w~N~~i~~li 359 (449)
T 2npp_B 285 VVMALLKYWP--KTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH---FQVAERALYYWNNEYIMSLI 359 (449)
T ss_dssp HHHHHHHTCC--SSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC---HHHHHHHHGGGGCHHHHHHH
T ss_pred HHHHHHHhCC--CCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHCCHHHHHHH
Confidence 3455556652 23343222334444555533 55777788888888888888753 345666776663 222
Q ss_pred hcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccce
Q 046316 645 KSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLM 694 (966)
Q Consensus 645 ~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~ 694 (966)
..- ...++..+||+|.+.....|...+...+..+++.+...++.-|
T Consensus 360 ~~n----~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf 405 (449)
T 2npp_B 360 SDN----AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLF 405 (449)
T ss_dssp HTT----HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhc----hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHH
Confidence 221 2223333455555555556788888888888888777765433
No 119
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=59.20 E-value=1.8e+02 Score=30.65 Aligned_cols=160 Identities=9% Similarity=0.105 Sum_probs=92.3
Q ss_pred ccccHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhcc-hhhcccc-cchHHHHHHHHhhcCChhHHHHHHHHHHHHHc
Q 046316 525 FQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASMEP-MISPLILNIWALHVSDPFISIDAIEVLEAIKC 602 (966)
Q Consensus 525 l~p~l~~il~~L~~ll~~~~~d~l~~~le~l~~~i~~~~-~~~~~~~-~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~ 602 (966)
++.....-...++.-+...+.+.+..+|-.|...+..|. ++..|.. .-+..++++ ... .+...-..++.+|..|..
T Consensus 112 Lrtsps~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~v-i~~-~~gN~q~Y~L~AL~~LM~ 189 (339)
T 3dad_A 112 LRTQLSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRV-GAA-ADHNYQSYILRALGQLML 189 (339)
T ss_dssp EEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHH-HTT-SCHHHHHHHHHHHHHHTT
T ss_pred EecCcHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHH-HHh-cChHHHHHHHHHHHHHHh
Confidence 443333345556666666777889999999999888776 7766532 223455555 322 355444444445554432
Q ss_pred CCCcHHHHH--HhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCChhHHHHHHHHH------------hHHHHHHHh
Q 046316 603 SPGCIHQLA--SRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVC------------FDAVIRIIL 668 (966)
Q Consensus 603 ~~~~~~~l~--~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~------------fp~l~~~l~ 668 (966)
.......+. ..++--+...+.+ .....+-.||.+|.+++.+.+.... . +... +..|+.++.
T Consensus 190 ~v~Gm~gvvs~~~fI~~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~~~-l-v~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 190 FVDGMLGVVAHSDTIQWLYTLCAS---LSRLVVKTALKLLLVFVEYSENNAP-L-FIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp SHHHHHHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGGHH-H-HHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred ccccccchhCCHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHHccCcccch-H-HHHHHHHhhhccCCCcHHHHHHHHh
Confidence 211111111 1222223333332 2235667899999999998754332 1 1121 457777775
Q ss_pred --ccCchHHhhhhHHHHHHHHhcCc
Q 046316 669 --QSEDHSEMQNATECLATFISGGR 691 (966)
Q Consensus 669 --~s~d~~~lq~~~~~l~~~i~~~~ 691 (966)
.+.|.++..+++..+...+.+++
T Consensus 265 ~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 265 EKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp TTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 25688889999999998888765
No 120
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=59.02 E-value=25 Score=41.78 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCCHHHhHHHHHHHHhhccCc--HHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHhhhchHHH
Q 046316 15 LLNCLSATLDPNQEVRSFAEVSLNQASLQP--AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKI 92 (966)
Q Consensus 15 l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p--A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L~~~~~kI 92 (966)
+.-+|....|+|++.|..|=..|..+...| -...+|+ ..|+..|-++|.+++..|
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~-----------------------~~v~~ll~~lL~D~~~~V 92 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLRE-----------------------QVVHIVLTETLTDNNIDS 92 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHT-----------------------THHHHHHHTTTTCSCHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHc-----------------------CCHHHHHHHHcCCCCHHH
Confidence 455566666777777777766666665444 0111111 123333444568889999
Q ss_pred HHHHHHHHHHHHhccCCC
Q 046316 93 CTAISMAVASIAAYDWPE 110 (966)
Q Consensus 93 r~~~a~~Is~Ia~~D~P~ 110 (966)
|.+++-++..++....++
T Consensus 93 r~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 93 RAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHhhcCch
Confidence 999999999998776553
No 121
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=55.49 E-value=26 Score=43.40 Aligned_cols=115 Identities=10% Similarity=0.017 Sum_probs=76.9
Q ss_pred CCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcc---cCchhhHhHHHHHHH--HH
Q 046316 68 AVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITD---QSNMNGVHGGLRCLA--LL 142 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s---~~~~~~~~~aL~~L~--~l 142 (966)
..++-+|..+++.+ .+-.+.=+.||..+-.++..+... ||..++.++|.+++.|+. ..+...+.|||.+|. .+
T Consensus 126 ~~t~l~~~ll~dL~-~Ls~S~Y~~VR~~AQ~~L~~~~~~-~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~ 203 (997)
T 1vsy_5 126 KASKLENLLLVDII-QLATSLYPDIYKPAQGTLVHCMKQ-LVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKI 203 (997)
T ss_dssp CCCSHHHHHHHHHH-HHHTSSCHHHHHHHHHHHHHHHTT-BTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHH
T ss_pred CCChHHHHHHHHHH-HHhcCchHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhh
Confidence 36777788876644 433344588999999888888776 899999999999999976 457789999999986 34
Q ss_pred HhhccccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Q 046316 143 SADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTA 189 (966)
Q Consensus 143 ~~~l~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~ 189 (966)
.+.+..+ -...+.+++.+.+..... .+.+...+-+++..+..
T Consensus 204 ~~~~~~d--~~~~~~~~~ali~~~~~d---KpsI~~l~~~l~~~i~~ 245 (997)
T 1vsy_5 204 HRKLMTD--YKDIGRLIFLLIECCRVN---ELEIGMYADKILTDIVI 245 (997)
T ss_dssp HHHGGGC--HHHHHHHHHHHHHTCSCS---SSSTTTHHHHHHHHHHT
T ss_pred hhHHhcC--hHHHHHHHHHHHHhCcCC---CHHHHHHHHHHHHHHHh
Confidence 4333321 234566777777764432 23444444455554443
No 122
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=47.60 E-value=3e+02 Score=29.69 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=71.8
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc---------cc---
Q 046316 81 LLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL---------DD--- 148 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l---------~~--- 148 (966)
+++.-.+++..||+.++..|...+..+ ++.=+.+++.|..++.+ .++..+..+..+...+++-. .+
T Consensus 68 il~f~~d~~~~vRk~~a~FieEa~~~~-~el~~~~l~~L~~LL~d-~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~ 145 (386)
T 3o2t_A 68 IIAFQADKSIEVRKFVIGFIEEACKRD-IELLLKLIANLNMLLRD-ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQ 145 (386)
T ss_dssp HHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHH
T ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhH
Confidence 455556778899999999999988754 56668888888888887 48888888888877766421 11
Q ss_pred cchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Q 046316 149 AIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAM 190 (966)
Q Consensus 149 ~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~ 190 (966)
++.=.....+-..+++++.+. +..+|..|+|-+..++..
T Consensus 146 e~~W~~m~~lK~~Il~~~ds~---n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 146 EACWDMVSAMAGDIILLLDSD---NDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccC---CcchHHHHHHHHHHHHHH
Confidence 111122233444555555543 467888899988877754
No 123
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=45.24 E-value=80 Score=28.24 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=46.4
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc
Q 046316 81 LLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD 148 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~ 148 (966)
.|+.|..+...|++....|+...- .-+++...+.+.+... .++...+.|+++.+++..-..
T Consensus 13 ~L~~L~~s~~sI~~~s~w~l~h~~------~a~~Iv~~i~~~l~~~-~~~~KL~~LYL~ndIl~ns~~ 73 (132)
T 4flb_A 13 KFQSVTNTMESIQGLSSWCIENKK------HHSTIVYHWMKWLRRS-AYPHRLNLFYLANDVIQNCKR 73 (132)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHTGG------GHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHCcccHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHhcc
Confidence 446677777889998888887643 3456888888888764 778888999999999987543
No 124
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=36.37 E-value=39 Score=41.83 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=64.5
Q ss_pred CCChHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHhcc-CCCCccchHHHHHHHhcc-----------cCchhhHhH
Q 046316 68 AVSSEEKEVIRKLLLSSLDDTH-RKICTAISMAVASIAAYD-WPEDWPDLLPFLLKLITD-----------QSNMNGVHG 134 (966)
Q Consensus 68 ~i~~~~K~~IR~~Ll~~L~~~~-~kIr~~~a~~Is~Ia~~D-~P~~WP~Ll~~L~~~l~s-----------~~~~~~~~~ 134 (966)
.++.++|..|++.++.+|.|++ -.||..+|.+++.|.++- +...=.+++..+...... ..+...+||
T Consensus 835 ~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~ 914 (997)
T 1vsy_5 835 QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHG 914 (997)
T ss_dssp TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHH
T ss_pred HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHH
Confidence 6788899999999999999999 999999999999998875 422111343333333211 011257899
Q ss_pred HHHHHHHHHhhcccc-chhhhhhhHHHHHHHHhc
Q 046316 135 GLRCLALLSADLDDA-IVPKLVPVLFPVLHTIVS 167 (966)
Q Consensus 135 aL~~L~~l~~~l~~~-~~~~i~~~l~p~L~~i~~ 167 (966)
|...|..++.-+.=. .. |.-+|.++..+.
T Consensus 915 aVLgL~AlV~a~Py~vP~----P~w~P~~l~~La 944 (997)
T 1vsy_5 915 NVLGLGAIISAFPYVFPL----PPWIPKNLSNLS 944 (997)
T ss_dssp HHHHHHHHHTTCSCCSSC----CTHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCC----CcccHHHHHHHH
Confidence 999999998765432 12 444554444443
No 125
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=31.61 E-value=5.7e+02 Score=28.34 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=82.5
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHH-HHHHHHHH
Q 046316 461 HQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMG-LFSSLADL 539 (966)
Q Consensus 461 ~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~-il~~L~~l 539 (966)
...+--+.-.-+.+-.+...=+...+..+|..+.+. +..||..+..-|+.-+.....+.+..-+.. |...+.++
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~-----~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~ 185 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQG-----EDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKV 185 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHccc-----chHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHH
Confidence 445554444445544444333345566666666653 457787766666554444445555554433 45666777
Q ss_pred HhhcChhhHHHHHHHHHHHHhhcchhhcccccchHHHHHHHHh-----hcCChhHHHHHHHHHHHHH-----cC--CCcH
Q 046316 540 LHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWAL-----HVSDPFISIDAIEVLEAIK-----CS--PGCI 607 (966)
Q Consensus 540 l~~~~~d~l~~~le~l~~~i~~~~~~~~~~~~l~p~~l~l~~~-----~~~d~~~~~~~~~~l~~l~-----~~--~~~~ 607 (966)
+.+...+...++|+-|... +... ++.=.+++++++.+. +. ..+|+......+.|+..-. +. ..-+
T Consensus 186 L~DVT~~EF~L~m~lL~~l-kl~~-t~~g~qeLv~ii~eQ-a~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv 262 (507)
T 3u0r_A 186 LEDVTGEEFVLFMKILSGL-KSLQ-TVSGRQQLVELVAEQ-ADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFV 262 (507)
T ss_dssp TTSCCHHHHHHHHHHHHTS-GGGS-SHHHHHHHHHHHHHH-HTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHH
T ss_pred hccccHHHHHHHHHHHHhc-cccc-CchHHHHHHHHHHHH-HhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHH
Confidence 7777777777777666322 1111 111113455555543 21 1245554445556665443 11 1245
Q ss_pred HHHHHhhhcchHhhhc
Q 046316 608 HQLASRILPYVGPILN 623 (966)
Q Consensus 608 ~~l~~~~lP~l~~~l~ 623 (966)
.-+|.+++|.+..+-+
T Consensus 263 ~y~~~kIlP~l~~L~e 278 (507)
T 3u0r_A 263 TYFCEQVLPNLGTLTT 278 (507)
T ss_dssp HHHHHHTGGGTTCCCC
T ss_pred HHHHHhhccchhhccc
Confidence 6688999997765543
No 126
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=29.94 E-value=3.2e+02 Score=24.81 Aligned_cols=38 Identities=5% Similarity=-0.097 Sum_probs=31.1
Q ss_pred CCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc
Q 046316 110 EDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD 148 (966)
Q Consensus 110 ~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~ 148 (966)
+.-+.+...+.+.+... .+....++|+++..|++....
T Consensus 39 ~~a~~Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~ 76 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKC-MPKQKLYAFYALDSICKNVGS 76 (144)
T ss_dssp GGHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccc
Confidence 34567888888888764 788999999999999998664
No 127
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=28.56 E-value=38 Score=30.87 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=40.4
Q ss_pred HHHHHHHHhc--cCCC-CccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc
Q 046316 97 SMAVASIAAY--DWPE-DWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD 148 (966)
Q Consensus 97 a~~Is~Ia~~--D~P~-~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~ 148 (966)
+|....||.. ++|. .|.++++.|...|+.. +++.++-||++|..+|+.-++
T Consensus 29 gylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k-~~~vk~KaL~lL~yL~~~Gs~ 82 (140)
T 1vdy_A 29 VYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK-SPIVKQKALRLIKYAVGKSGS 82 (140)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHTTTSCH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC-CcceeehHHHHHHHHHHhCCH
Confidence 5666677654 5564 4699999999999985 789999999999999986543
No 128
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=28.18 E-value=5.8e+02 Score=27.32 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHH--HHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcC
Q 046316 587 PFISIDAIEVLEAIKCSPGCIHQL--ASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSA 647 (966)
Q Consensus 587 ~~~~~~~~~~l~~l~~~~~~~~~l--~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~ 647 (966)
...-..++.||+++.+.......+ .+..+..|..++.++. ......++++|+.+....
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~---~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV---PNMMIDAAKLLSALCILP 193 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTS---HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCc---hHHHHHHHHHHHHHHhCc
Confidence 345567788999988664322222 2334555556555432 245567899999888654
No 129
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=27.04 E-value=5e+02 Score=26.18 Aligned_cols=121 Identities=13% Similarity=0.183 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHH
Q 046316 235 VKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLT 314 (966)
Q Consensus 235 lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~ 314 (966)
.|..++..|.+=.+.|+.. .+.+=..+..+.-++..+..+| -.++.. ... ..-..=++.++..+..
T Consensus 17 ~Re~AL~eLsk~Re~~~~L-a~~LW~S~Gtia~LLQEIisiY--p~lspp------~Lt-----~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 17 TRENALLELSKKRESVPDL-APMLWHSFGTIAALLQEIVNIY--PSINPP------TLT-----AHQSNRVCNALALLQC 82 (268)
T ss_dssp THHHHHHHHHHHTTTCTTH-HHHHHHSTTHHHHHHHHHHHTG--GGBTTB------CCC-----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccH-HHHHHhccCHHHHHHHHHHHHc--ccCCCc------ccC-----HHHHhHHHHHHHHHHH
Confidence 4777777777766666542 1222111222233334444456 222210 010 0113456889999999
Q ss_pred HhcChhHHHHH-HHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhH
Q 046316 315 IVGSAKLVKVI-ASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGI 388 (966)
Q Consensus 315 ~~~~~~~~~~l-~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~ 388 (966)
++++++++..| +.+ +..++.|++-.+.. +.|.|| +|-++..++..|++.-..++.
T Consensus 83 vAshpetr~~Fl~a~---iplyLyPfL~t~sk------~r~fE~----------LRLtsLGVIgaLvK~dd~eVi 138 (268)
T 2fv2_A 83 VASHPETRSAFLAAH---IPLFLYPFLHTVSK------TRPFEY----------LRLTSLGVIGALVKTDEQEVI 138 (268)
T ss_dssp HHHCTTTHHHHHHTT---GGGGTHHHHHCCCC------SHHHHH----------HHHHHHHHHHHHGGGCCHHHH
T ss_pred HHcCcchhhHHHHcc---chHHhhhhhccccC------CCcchh----------hhhhHHHHHHHHhccCcHHHH
Confidence 99999998765 444 33344587776643 233444 478888888888876444443
No 130
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=24.56 E-value=9.4e+02 Score=29.73 Aligned_cols=144 Identities=12% Similarity=0.112 Sum_probs=82.4
Q ss_pred HHhcCCCHHHhHHHHHHHHh--hccCc-----HHHHHHHHhhhccccccccccCCCCChHHHHHHHHHHHHHhhhchHHH
Q 046316 20 SATLDPNQEVRSFAEVSLNQ--ASLQP-----AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKI 92 (966)
Q Consensus 20 ~~~ls~d~~~R~~AE~~L~~--~~~~p-----A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~~Ll~~L~~~~~kI 92 (966)
..+..|+.+.-+..+.-++. ...+| |.+-+=..|.++=... +..+++....|.+.+.+++...+..-
T Consensus 383 ~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~------~~c~~~~v~~i~~~l~~~~~~~~~~~ 456 (1056)
T 1lsh_A 383 LSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT------VSCPDELLQPLHDLLSQSSDRAKEEE 456 (1056)
T ss_dssp HHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC------SSCCGGGTHHHHHHHHHHHHTTCHHH
T ss_pred hccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC------CCCCHHHHHHHHHHHHHHHhcCChHH
Confidence 34445888888888777763 23344 3344444444332211 12344556778888888887666544
Q ss_pred HHHHHHHHHHHHhccCCCCccchHHHHHHHhcc-----cCchh-hHhHHHHHHHHHHhhccccchhhhhhhHHHHHHHHh
Q 046316 93 CTAISMAVASIAAYDWPEDWPDLLPFLLKLITD-----QSNMN-GVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIV 166 (966)
Q Consensus 93 r~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s-----~~~~~-~~~~aL~~L~~l~~~l~~~~~~~i~~~l~p~L~~i~ 166 (966)
+..+-.+++.++. | .-++.|..++.. .+.+. ....|+.+|..+.+.. -..+-+.+++++
T Consensus 457 ~~~~LkaLGN~g~---p----~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--------p~~v~~il~~i~ 521 (1056)
T 1lsh_A 457 IVLALKALGNAGQ---P----NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--------PRKVQEIVLPIF 521 (1056)
T ss_dssp HHHHHHHHHHHTC---G----GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--------HHHHHHHHHHHH
T ss_pred HHHHHHHhhccCC---h----hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--------hHHHHHHHHHHh
Confidence 5555556666654 3 567777777642 11222 2235666665554321 123566788888
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q 046316 167 SFPESYDRYVRTKALSIVY 185 (966)
Q Consensus 167 ~~~~~~~~~~r~~al~i~~ 185 (966)
.+.. ...++|..|+.++-
T Consensus 522 ~n~~-e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 522 LNVA-IKSELRIRSCIVFF 539 (1056)
T ss_dssp HCTT-SCHHHHHHHHHHHH
T ss_pred cCCC-CChHHHHHHHHHHH
Confidence 7665 57889987766544
No 131
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=24.12 E-value=5.6e+02 Score=25.79 Aligned_cols=163 Identities=12% Similarity=0.158 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCCHHHhHHHHHHHHhhccC-c------------HHHHHHHHhhhccccccccccCCCCChHHHHHHHH
Q 046316 13 QWLLNCLSATLDPNQEVRSFAEVSLNQASLQ-P------------AAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRK 79 (966)
Q Consensus 13 ~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~-p------------A~i~LKn~I~~~W~~~~~~~~~~~i~~~~K~~IR~ 79 (966)
+.+.+.+....+|+ .|..|=..|-.-..+ | -+++|.--|.-|..-. +|.++...=..+-+
T Consensus 3 ~~i~qli~~L~~p~--~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~ls-----pp~Lt~~~SnRVcn 75 (268)
T 2fv2_A 3 EKIYQWINELSSPE--TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSIN-----PPTLTAHQSNRVCN 75 (268)
T ss_dssp HHHHHHHHHTSSTT--THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBT-----TBCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCch--hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCC-----CcccCHHHHhHHHH
Confidence 56788888888775 587777776644333 3 3455655555554321 23455554444433
Q ss_pred H--HHHHhh----------------------------hchHHHHHHHHHHHHHHHhccCCC--Cc---cchHHHHHHHhc
Q 046316 80 L--LLSSLD----------------------------DTHRKICTAISMAVASIAAYDWPE--DW---PDLLPFLLKLIT 124 (966)
Q Consensus 80 ~--Ll~~L~----------------------------~~~~kIr~~~a~~Is~Ia~~D~P~--~W---P~Ll~~L~~~l~ 124 (966)
. |+|.+. .+-..+|-+.--+|+.+.+.|=|+ .+ .+++|..+..+.
T Consensus 76 aLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime 155 (268)
T 2fv2_A 76 ALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME 155 (268)
T ss_dssp HHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh
Confidence 2 233331 123567888888899999888665 33 678888888888
Q ss_pred ccCchhhHhHHHHHHHHHHhh-c-------cccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 046316 125 DQSNMNGVHGGLRCLALLSAD-L-------DDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYS 186 (966)
Q Consensus 125 s~~~~~~~~~aL~~L~~l~~~-l-------~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~ 186 (966)
.+ +.-..--|...+..|..+ . ..+.|..++..+-..+.++..++ ++.+.+-++.+|..
T Consensus 156 ~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~p---s~RLLKhiircYlR 221 (268)
T 2fv2_A 156 SG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEP---SARLLKHVVRCYLR 221 (268)
T ss_dssp HS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSC---CHHHHHHHHHHHHH
T ss_pred hc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHH
Confidence 74 666666777777776643 1 22456666554444444443332 34444445554443
No 132
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=22.98 E-value=1.6e+02 Score=24.95 Aligned_cols=51 Identities=16% Similarity=-0.059 Sum_probs=32.0
Q ss_pred HHhh--cCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhChhhHHHHHHHHH
Q 046316 337 IAFL--QMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAAS 396 (966)
Q Consensus 337 i~~~--~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~ 396 (966)
+|+| +++.+|.|.-... ......+.+|..||..|.+.-+..-+..++.++.
T Consensus 34 L~~L~~~L~~~d~E~I~a~---------~~~~G~~~aa~~LL~~L~r~~~~gWf~~fl~AL~ 86 (100)
T 2lwd_A 34 ISDLSECLINQECEEILQI---------CSTKGMMAGAEKLVECLLRSDKENWPKTLKLALE 86 (100)
T ss_dssp HHHHTTTSCHHHHHHHHHH---------HHHTCHHHHHHHHHHHHHHCCCTHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHH---------HHccChHHHHHHHHHHHHhcCcCCcHHHHHHHHH
Confidence 4666 7888877643211 1235667889999998887544455666665554
No 133
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=22.10 E-value=6.1e+02 Score=25.45 Aligned_cols=108 Identities=11% Similarity=0.179 Sum_probs=71.2
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhh----ccc-----
Q 046316 78 RKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSAD----LDD----- 148 (966)
Q Consensus 78 R~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~----l~~----- 148 (966)
=+.+++.-.+++..+|+.++..|..+...+ |+.=+..++.|..++.+ .|+..+..+..+...+++- +..
T Consensus 55 l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~~~l~~L~~Ll~d-~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~ 132 (257)
T 3gs3_A 55 LESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLPHVINVVSMLLRD-NSAQVIKRVIQACGSIYKNGLQYLCSLMEPG 132 (257)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCC
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 344555546678999999999999988654 67778888888888886 4888888888888777652 111
Q ss_pred ---cchhhhhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Q 046316 149 ---AIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAM 190 (966)
Q Consensus 149 ---~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~al~i~~~~~~~ 190 (966)
++.=.....+=..+++++.+. +..+|..|+|-+..++..
T Consensus 133 ~~~~~~W~~m~~lK~~Il~~~~s~---n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 133 DSAEQAWNILSLIKAQILDMIDNE---NDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSS---CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccC---CcchHHHHHHHHHHHHHh
Confidence 111112233334455555443 467888888877776643
No 134
>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}
Probab=21.85 E-value=26 Score=22.08 Aligned_cols=9 Identities=44% Similarity=1.018 Sum_probs=5.1
Q ss_pred CCccccccc
Q 046316 903 DSDWEEVQE 911 (966)
Q Consensus 903 ~~dwe~~~~ 911 (966)
||||+|+=|
T Consensus 11 DDDWDdeWD 19 (31)
T 3lge_E 11 DDDWDEDWD 19 (31)
T ss_pred ccccccccc
Confidence 566755543
No 135
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.81 E-value=2.7e+02 Score=24.72 Aligned_cols=77 Identities=9% Similarity=-0.005 Sum_probs=51.4
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc------cchhhh
Q 046316 81 LLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD------AIVPKL 154 (966)
Q Consensus 81 Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~------~~~~~i 154 (966)
.|+.|..+...|++....|+...- .=.++...+.+.+... .++...+.|+++++++..-.. ..|..+
T Consensus 12 ~L~~L~~s~~sI~~~s~w~l~~~~------~a~~iv~~i~~~l~~~-~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~ 84 (135)
T 4fu3_A 12 KLSELSNSQQSVQTLSLWLIHHRK------HAGPIVSVWHRELRKA-KSNRKLTFLYLANDVIQNSKRKGPEFTREFESV 84 (135)
T ss_dssp HHHHCCSSTTHHHHHHHHHHHTGG------GHHHHHHHHHHHHHHS-CTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTT
T ss_pred HHHHccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 346666777889998888887543 2346778888888764 667888999999999765322 124444
Q ss_pred hhhHHHHHHH
Q 046316 155 VPVLFPVLHT 164 (966)
Q Consensus 155 ~~~l~p~L~~ 164 (966)
++.+|..++.
T Consensus 85 l~~~~~~~~~ 94 (135)
T 4fu3_A 85 LVDAFSHVAR 94 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555544444
No 136
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=20.70 E-value=2e+02 Score=26.19 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhccc
Q 046316 90 RKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDD 148 (966)
Q Consensus 90 ~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l~~ 148 (966)
++|.+-...|+..+ ..-+.+...+.+.+... .+....++|+++..|++...+
T Consensus 24 ~~I~~LT~~a~~~~------~~~~~IV~~~~~~i~k~-~~~~KL~~LYL~DsIvrn~~~ 75 (145)
T 3d9j_A 24 AKMTQITKAAIKAI------KFYKHVVQSVEKFIQKC-KPEYKVPGLYVIDSIVRQSRH 75 (145)
T ss_dssp HHHHHHHHHHHHTG------GGHHHHHHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhC-CccceeehhhhhHHHHHHhhh
Confidence 55555444444332 34467888888888764 778899999999999987654
Done!