BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046317
MAPMRLKSRLIVLFLLMALLSNAHFYQAAEVAGVSRRKGVFNGESVVVVAIDQTILAGRK
MAVVKQRCYEKGKKVVAHAKLCKKNNAAASRKVSEDGDDKEFVAFSADYRAPRHHPPKNN

High Scoring Gene Products

Symbol, full name Information P value
RGF3
AT2G04025 		protein from Arabidopsis thaliana 2.1e-06
RGF2
AT1G13620 		protein from Arabidopsis thaliana 3.9e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046317
        (120 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2827444 - symbol:RGF3 "AT2G04025" species:3702...   109  2.1e-06   1
TAIR|locus:2009982 - symbol:RGF2 "AT1G13620" species:3702...    97  3.9e-05   1


>TAIR|locus:2827444 [details] [associations]
            symbol:RGF3 "AT2G04025" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0005615 "extracellular
            space" evidence=ISS] [GO:0008083 "growth factor activity"
            evidence=IDA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IDA] [GO:0010082 "regulation of root
            meristem growth" evidence=IGI] [GO:0010628 "positive regulation of
            gene expression" evidence=IEP] [GO:0030154 "cell differentiation"
            evidence=IDA] GO:GO:0005615 GO:GO:0030154 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0008284 GO:GO:0008083 GO:GO:0010082
            EMBL:AC007167 HOGENOM:HOG000142256 ProtClustDB:CLSN2681140
            EMBL:BT014797 EMBL:BT015692 IPI:IPI00520913 RefSeq:NP_178486.2
            UniGene:At.50068 EnsemblPlants:AT2G04025.1 GeneID:814929
            KEGG:ath:AT2G04025 TAIR:At2g04025 eggNOG:NOG321522 OMA:RYSLHED
            PhylomeDB:Q6ID76 Genevestigator:Q6ID76 Uniprot:Q6ID76
        Length = 110

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 32/111 (28%), Positives = 54/111 (48%)

Query:    11 IVLFLLMALLSNAHFYQAAEVAGV-SRRKGVFNGESVVVVAIDQTILAGRKMAVVKQRCY 69
             I+  L++ LL  +  Y   E     S R  V   +++    + + ++ GRK+ +      
Sbjct:     7 ILCVLIILLLCFSFRYSLHEDGNQQSSRDFVSTAKAIKYGDVMKKMIRGRKLMMAS---- 62

Query:    70 EKGKKVVAHAKLCKKNNAAASRKVSEDGDDKEFVAFSADYRAPRHHPPKNN 120
               G+K  A  K+ K+ N    R  S+  ++   VA++ADY   +HHPPKNN
Sbjct:    63 --GEKEEAETKM-KRGNRETERNSSKSVEEDGLVAYTADYWRAKHHPPKNN 110


>TAIR|locus:2009982 [details] [associations]
            symbol:RGF2 "AT1G13620" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0005615 "extracellular
            space" evidence=ISS] [GO:0008083 "growth factor activity"
            evidence=IDA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IDA] [GO:0010082 "regulation of root
            meristem growth" evidence=IGI] [GO:0030154 "cell differentiation"
            evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005615
            GO:GO:0030154 GO:GO:0008284 EMBL:AC027656 GO:GO:0008083
            GO:GO:0010082 EMBL:AY648307 EMBL:DQ056454 IPI:IPI00534055
            PIR:C86269 RefSeq:NP_172819.2 UniGene:At.50781
            EnsemblPlants:AT1G13620.1 GeneID:837923 KEGG:ath:AT1G13620
            TAIR:At1g13620 eggNOG:NOG288646 HOGENOM:HOG000142256 OMA:ADYWKPR
            PhylomeDB:Q6DSU1 ProtClustDB:CLSN2681140 Genevestigator:Q6DSU1
            Uniprot:Q6DSU1
        Length = 109

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query:    60 KMAVVKQRCYEKGKKVVAHAKLCKKNNAAASRKVSEDGDDKEFVAFSADYRAPRHHPPKN 119
             K A V+ R  ++  K     K+  K        V E+ D    VA++ADY  PRHHPPKN
Sbjct:    54 KKAQVRGRSGQEFSKETT--KMMMKKTTKKETNVEEEDD---LVAYTADYWKPRHHPPKN 108

Query:   120 N 120
             N
Sbjct:   109 N 109


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.132   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      120       120   0.00091  102 3  11 22  0.45    30
                                                     29  0.48    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  531 (57 KB)
  Total size of DFA:  109 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.47u 0.15s 12.62t   Elapsed:  00:00:01
  Total cpu time:  12.47u 0.15s 12.62t   Elapsed:  00:00:01
  Start:  Sat May 11 06:47:34 2013   End:  Sat May 11 06:47:35 2013

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