BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046317
(120 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224101637|ref|XP_002312363.1| predicted protein [Populus trichocarpa]
gi|222852183|gb|EEE89730.1| predicted protein [Populus trichocarpa]
Length = 140
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 2 APMRLKSRLIVLFLLMALLSNAHFYQAAEVAGVSRRKGVFNGESVVVVAIDQTILAGRKM 61
+P++ L++L A L++A + EV S + + +G+ +V +I + + GRK+
Sbjct: 4 SPVKFTCLLLLLLFTSAWLNSARAHPTVEVDTFSSERIIVDGDGMVTTSIKK--IGGRKV 61
Query: 62 AVVKQRCYEKGKKVVAHAKLCKKNNA--------AASRKVSEDGDDKE------------ 101
K VAH + ++A R+V + G+ +
Sbjct: 62 VRAHNIKRPDIKGNVAHGGTSRISSANDQVVGKYGYEREVMDIGNKRNGGRFPEGVKESG 121
Query: 102 FVAFSADYRAPRHHPPKNN 120
FVAF+ADY PRHHPPKNN
Sbjct: 122 FVAFNADYHEPRHHPPKNN 140
>gi|357516867|ref|XP_003628722.1| hypothetical protein MTR_8g066030 [Medicago truncatula]
gi|355522744|gb|AET03198.1| hypothetical protein MTR_8g066030 [Medicago truncatula]
Length = 92
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 10 LIVLFLLMALLSNAHFYQAAEVAGVSRRKGVFNGESVVVVAIDQTILAGRKMAV-VKQRC 68
++++ L + LSNA + GV G+ + ++ V AID G+ +V R
Sbjct: 4 ILLVLLCASWLSNARLHPQG---GVVEVNGISSTKANVTTAID-----GKNESVNSPSRS 55
Query: 69 YEKGKKVVAHAKLCKKNNAAASRKVSEDGDDKEFVAFSADYRAPRHHPPKNN 120
GK+ + + DD FVAF+ DY PRHHPPKNN
Sbjct: 56 SFHGKRSLR----------------THLSDDSGFVAFTTDYHPPRHHPPKNN 91
>gi|255547033|ref|XP_002514574.1| conserved hypothetical protein [Ricinus communis]
gi|223546178|gb|EEF47680.1| conserved hypothetical protein [Ricinus communis]
Length = 164
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 63/157 (40%), Gaps = 47/157 (29%)
Query: 11 IVLFLLMALLSNAHFYQAA----EVAGVSRRKGVFNGE-SVVVVAIDQTILA------GR 59
+ L +M LL H + AA + + F+ E +V V I +A GR
Sbjct: 8 VTLRFIMCLLLAVHLFSAAWGDTNAYALEDEEDFFSTEKNVPVDGIPNGSVATKSEIRGR 67
Query: 60 KM---AVVKQRCYEKGKKVVAHAKLCKKNNAAASRKVSEDGD-----DKE---------- 101
KM V+ +R +G AH + +N A A + S+ + +KE
Sbjct: 68 KMIQNKVIIKRVEIRGSGAAAHGETASENKAVAGKLGSKGNNINSKNNKEEPMIGGGTSK 127
Query: 102 ------------------FVAFSADYRAPRHHPPKNN 120
FVAFSADY APRHHPPKNN
Sbjct: 128 GSISHFPHKSMNNEAAAGFVAFSADYHAPRHHPPKNN 164
>gi|356499952|ref|XP_003518799.1| PREDICTED: uncharacterized protein LOC100818175 [Glycine max]
Length = 118
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 10 LIVLFLLMALLSNAHFY-QAAEVAGVSRRKGVFNGESVV---VVAIDQTILAGRKMAVVK 65
++++FL A LS A + A V + K SV + AID+ L +
Sbjct: 10 VVLVFLCAACLSTARLNPKGASVNDIPDIKASI-ATSVTKSTMAAIDEDNLNRPS----E 64
Query: 66 QRCYEKGKKVVAHAKL-CKKNNAAASRKVSEDGDDKEFVAFSADYRAPRHHPPKNN 120
+R K KV++ + K+NNA R D +++ +AF+ADYR P HHPPKNN
Sbjct: 65 KRLMSKSGKVISAPNVEAKRNNA---RSCLSDEVNEDPLAFTADYRRPVHHPPKNN 117
>gi|20198146|gb|AAM15430.1| predicted protein [Arabidopsis thaliana]
Length = 88
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 55 ILAGRKMAVVKQRCYEKGKKVVAHAKLCKKNNAA---ASRKVSEDGDDKEFVAFSADYRA 111
++ GRK+ + G+K A K+ + N +S+ V EDG VA++ADY
Sbjct: 30 MIRGRKLMMAS------GEKEEAETKMKRGNRETERNSSKSVEEDG----LVAYTADYWR 79
Query: 112 PRHHPPKNN 120
+HHPPKNN
Sbjct: 80 AKHHPPKNN 88
>gi|42568920|ref|NP_178486.2| uncharacterized protein [Arabidopsis thaliana]
gi|75123850|sp|Q6ID76.1|RGF3_ARATH RecName: Full=Root meristem growth factor 3; Short=AtRGF3; Flags:
Precursor
gi|48310233|gb|AAT41780.1| At2g04025 [Arabidopsis thaliana]
gi|52218798|gb|AAU29469.1| At2g04025 [Arabidopsis thaliana]
gi|330250683|gb|AEC05777.1| uncharacterized protein [Arabidopsis thaliana]
Length = 110
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 55 ILAGRKMAVVKQRCYEKGKKVVAHAKLCKKNNAA---ASRKVSEDGDDKEFVAFSADYRA 111
++ GRK+ + G+K A K+ + N +S+ V EDG VA++ADY
Sbjct: 52 MIRGRKLMMAS------GEKEEAETKMKRGNRETERNSSKSVEEDG----LVAYTADYWR 101
Query: 112 PRHHPPKNN 120
+HHPPKNN
Sbjct: 102 AKHHPPKNN 110
>gi|297818046|ref|XP_002876906.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322744|gb|EFH53165.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 111
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 55 ILAGRKMAVVKQRCYEKGKKVVAHAKLCKKNNAAASRKVSEDGDDKEFVAFSADYRAPRH 114
++ GRK+ + K K+ N RK S+ ++ VA++ADY +H
Sbjct: 53 MIGGRKLMIANG-------KEEEEETTMKRGNRETERKASKSVEEDGLVAYTADYWRAKH 105
Query: 115 HPPKNN 120
HPPKNN
Sbjct: 106 HPPKNN 111
>gi|255547069|ref|XP_002514592.1| conserved hypothetical protein [Ricinus communis]
gi|223546196|gb|EEF47698.1| conserved hypothetical protein [Ricinus communis]
Length = 145
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 24/144 (16%)
Query: 1 MAPMRLKSRLIVLFLLMALLSNAHF-YQAAEVAGVSR-------RKGVFNGESVVVVAID 52
M RL L+V +L S A +Q E A V++ + + N + + +
Sbjct: 1 MVSTRLSGFLLVFIMLHVRNSTALITHQGKEKAIVAKEDVLAVAKSSLINAHATMADEVS 60
Query: 53 QTILAGRKMA---VVKQR--CYEKGKKVVAHAKL---CKKN------NAAASRKVSEDGD 98
T L GRKM V+K+ K+ A CKK ++R S +
Sbjct: 61 NTKLGGRKMMLKMVLKKDEVLNTDDTKISGAANFEDSCKKGILRGNCKLMSNRISSHPLN 120
Query: 99 DK--EFVAFSADYRAPRHHPPKNN 120
D+ F FSADY P+ HPPKNN
Sbjct: 121 DRMVGFTTFSADYHVPKSHPPKNN 144
>gi|297844264|ref|XP_002890013.1| hypothetical protein ARALYDRAFT_471524 [Arabidopsis lyrata subsp.
lyrata]
gi|297335855|gb|EFH66272.1| hypothetical protein ARALYDRAFT_471524 [Arabidopsis lyrata subsp.
lyrata]
Length = 111
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 98 DDKEFVAFSADYRAPRHHPPKNN 120
++ + VA++ADY PRHHPPKNN
Sbjct: 89 EEDDLVAYTADYWKPRHHPPKNN 111
>gi|79343670|ref|NP_172819.2| uncharacterized protein [Arabidopsis thaliana]
gi|75120804|sp|Q6DSU1.1|RGF2_ARATH RecName: Full=Root meristem growth factor 2; Short=AtRGF2; Flags:
Precursor
gi|49823470|gb|AAT68718.1| hypothetical protein At1g13620 [Arabidopsis thaliana]
gi|332190927|gb|AEE29048.1| uncharacterized protein [Arabidopsis thaliana]
Length = 109
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 98 DDKEFVAFSADYRAPRHHPPKNN 120
++ + VA++ADY PRHHPPKNN
Sbjct: 87 EEDDLVAYTADYWKPRHHPPKNN 109
>gi|8920566|gb|AAF81288.1|AC027656_5 F21F23.5 [Arabidopsis thaliana]
Length = 86
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 98 DDKEFVAFSADYRAPRHHPPKNN 120
++ + VA++ADY PRHHPPKNN
Sbjct: 64 EEDDLVAYTADYWKPRHHPPKNN 86
>gi|413943608|gb|AFW76257.1| hypothetical protein ZEAMMB73_707421 [Zea mays]
Length = 151
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 103 VAFSADYRAPRHHPPKNN 120
+ F+ADYR+PR HPPKNN
Sbjct: 134 IPFTADYRSPRKHPPKNN 151
>gi|67633372|gb|AAY78611.1| hypothetical protein At1g13620 [Arabidopsis thaliana]
Length = 109
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 98 DDKEFVAFSADYRAPRHHPPKN 119
++ + VA++ADY PRHHPPKN
Sbjct: 87 EEDDLVAYTADYWKPRHHPPKN 108
>gi|413943607|gb|AFW76256.1| hypothetical protein ZEAMMB73_707421 [Zea mays]
Length = 66
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 12/64 (18%)
Query: 57 AGRKMAVVKQRCYEKGKKVVAHAKLCKKNNAAASRKVSEDGDDKEFVAFSADYRAPRHHP 116
+G K AV K C G K ++ N + + KV DG + F+ADYR+PR HP
Sbjct: 15 SGAKYAVGK--CGHGGGKDLS------MNCSKHTPKVYFDG----HIPFTADYRSPRKHP 62
Query: 117 PKNN 120
PKNN
Sbjct: 63 PKNN 66
>gi|407645175|ref|YP_006808934.1| acyl-CoA carboxylase [Nocardia brasiliensis ATCC 700358]
gi|407308059|gb|AFU01960.1| acyl-CoA carboxylase [Nocardia brasiliensis ATCC 700358]
Length = 515
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 19/79 (24%)
Query: 18 ALLSNAHFYQAAEVA------------GVSRRKGVFNGESVVVVAIDQTI-------LAG 58
ALL N F + ++ GV +G +G VVV+A DQT+ + G
Sbjct: 44 ALLDNGSFVEMGKLVRQPGANNAMYGDGVVTGRGTIDGRPVVVIAHDQTVHGGSVGEMFG 103
Query: 59 RKMAVVKQRCYEKGKKVVA 77
RK+A + YEK VVA
Sbjct: 104 RKVAAAMEFAYEKACPVVA 122
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,669,699,280
Number of Sequences: 23463169
Number of extensions: 53739699
Number of successful extensions: 147023
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 147008
Number of HSP's gapped (non-prelim): 21
length of query: 120
length of database: 8,064,228,071
effective HSP length: 87
effective length of query: 33
effective length of database: 6,022,932,368
effective search space: 198756768144
effective search space used: 198756768144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)