BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046317
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TF7|E Chain E, 42f3 Ql9H2-Ld Complex
pdb|3TF7|A Chain A, 42f3 Ql9H2-Ld Complex
pdb|3TFK|A Chain A, 42f3-P4b10H2-Ld
pdb|3TJH|A Chain A, 42f3-P3a1H2-Ld Complex
pdb|3TPU|I Chain I, 42f3 P5e8H2-Ld Complex
pdb|3TPU|E Chain E, 42f3 P5e8H2-Ld Complex
pdb|3TPU|K Chain K, 42f3 P5e8H2-Ld Complex
pdb|3TPU|Q Chain Q, 42f3 P5e8H2-Ld Complex
Length = 180
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DDKEFV F +D PR+ P
Sbjct: 30 DDKEFVRFDSDAENPRYEP 48
>pdb|2E7L|E Chain E, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|2E7L|F Chain F, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
Length = 181
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DDKEFV F +D PR+ P
Sbjct: 29 DDKEFVRFDSDAENPRYEP 47
>pdb|2OI9|A Chain A, Structure Of The 2cLDQL9 ALLOGENEIC COMPLEX
Length = 179
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DDKEFV F +D PR+ P
Sbjct: 29 DDKEFVRFDSDAENPRYEP 47
>pdb|3E2H|A Chain A, Structure Of The M67 High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|3E3Q|A Chain A, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|B Chain B, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|CC Chain c, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|H Chain H, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|L Chain L, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|P Chain P, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|U Chain U, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|Y Chain Y, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
Length = 175
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DDKEFV F +D PR+ P
Sbjct: 29 DDKEFVRFDSDAENPRYEP 47
>pdb|3ERY|A Chain A, Different Thermodynamic Binding Mechanisms And Peptide
Fine Specificities Associated With A Panel Of
Structurally Similar High-Affinity T Cell Receptors
pdb|3ERY|B Chain B, Different Thermodynamic Binding Mechanisms And Peptide
Fine Specificities Associated With A Panel Of
Structurally Similar High-Affinity T Cell Receptors
Length = 174
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DDKEFV F +D PR+ P
Sbjct: 29 DDKEFVRFDSDAENPRYEP 47
>pdb|2QRT|A Chain A, Crystal Structure Of A Disulfide Trapped Single Chain
Trimer Composed Of The Mhc I Heavy Chain H-2kb Y84c,
Beta- 2microglobulin, And Ovalbumin-Derived Peptide.
pdb|2QRT|B Chain B, Crystal Structure Of A Disulfide Trapped Single Chain
Trimer Composed Of The Mhc I Heavy Chain H-2kb Y84c,
Beta- 2microglobulin, And Ovalbumin-Derived Peptide
Length = 422
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 171 DDTEFVRFDSDAENPRYEP 189
>pdb|2QRS|A Chain A, Crystal Structure Of A Single Chain Trimer Composed Of The
Mhc I Heavy Chain H-2kb Y84a, Beta-2microglobulin, And
Ovalbumin-Derived Peptide.
pdb|2QRS|B Chain B, Crystal Structure Of A Single Chain Trimer Composed Of The
Mhc I Heavy Chain H-2kb Y84a, Beta-2microglobulin, And
Ovalbumin-Derived Peptide
Length = 422
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 171 DDTEFVRFDSDAENPRYEP 189
>pdb|2QRI|A Chain A, Crystal Structure Of A Single Chain Trimer Composed Of The
Mhc I Heavy Chain H-2kb Wt, Beta-2microglobulin, And
Ovalbumin-Derived Peptide.
pdb|2QRI|B Chain B, Crystal Structure Of A Single Chain Trimer Composed Of The
Mhc I Heavy Chain H-2kb Wt, Beta-2microglobulin, And
Ovalbumin-Derived Peptide
Length = 422
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 171 DDTEFVRFDSDAENPRYEP 189
>pdb|3HAZ|A Chain A, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
pdb|3HAZ|B Chain B, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
Length = 1001
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 91 RKVSEDGDDKEFVAFSADYRAP 112
R++ E+G + FVA +ADYR P
Sbjct: 458 RRLLENGANSSFVAQAADYRVP 479
>pdb|1S7Q|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7R|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7R|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7S|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7T|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7T|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
Length = 348
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|3RGV|C Chain C, A Single Tcr Bound To Mhci And Mhc Ii Reveals Switchable
Tcr Conformers
Length = 275
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|1FO0|H Chain H, Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule
Complex
Length = 276
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 30 DDTEFVRFDSDAENPRYEP 48
>pdb|1LEK|A Chain A, Crystal Structure Of H-2kbm3 Bound To Dev8
Length = 274
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|1MWA|H Chain H, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1MWA|I Chain I, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
Length = 275
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|1NAM|H Chain H, Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule
Complex
pdb|1WBZ|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1WBZ|C Chain C, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|3ROL|A Chain A, Murine Class I Major Histocompatibility Complex H-2kb In
Complex With Post-Translationally Modified Lcmv-Derived
Gp34-41 Peptide, Comprising A Nitrotyrosine At Position
3
pdb|3ROL|C Chain C, Murine Class I Major Histocompatibility Complex H-2kb In
Complex With Post-Translationally Modified Lcmv-Derived
Gp34-41 Peptide, Comprising A Nitrotyrosine At Position
3
pdb|3ROO|A Chain A, Murine Class I Major Histocompatibility Complex H-2kb In
Complex With Immunodominant Lcmv-Derived Gp34-41 Peptide
pdb|3ROO|C Chain C, Murine Class I Major Histocompatibility Complex H-2kb In
Complex With Immunodominant Lcmv-Derived Gp34-41 Peptide
Length = 275
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|1S7U|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|3QUK|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUK|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUL|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3TBS|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBS|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBT|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBV|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBW|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBX|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand V3p
pdb|3TBY|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
Length = 338
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|1LEG|A Chain A, Crystal Structure Of H-2kb Bound To The Dev8 Peptide
Length = 274
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|1N59|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2kb, B2-microglobulin,
And A 9-residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N59|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2kb, B2-microglobulin,
And A 9-residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
Length = 276
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|2VAB|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Sendai Virus Nucleoprotein
pdb|2VAA|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Vesicular Stomatitis Virus
Nucleoprotein
pdb|1VAD|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Yeast Alpha-Glucosidase
pdb|1VAC|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Chicken Ovalbumin
pdb|2CKB|H Chain H, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|I Chain I, Structure Of The 2cKBDEV8 COMPLEX
pdb|1BQH|A Chain A, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|D Chain D, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1OSZ|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And An (L4v) Mutant Of The Vesicular
Stomatitis Virus Nucleoprotein
pdb|1KBG|H Chain H, Mhc Class I H-2kb Presented Glycopeptide Rgy8-6h-Gal2
pdb|1G6R|H Chain H, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|I Chain I, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G7P|A Chain A, Crystal Structure Of Mhc Class I H-2kb Heavy Chain
Complexed With Beta-2 Microglobulin And Yeast
Alpha-Glucosidase
pdb|1G7Q|A Chain A, Crystal Structure Of Mhc Class I H-2kb Heavy Chain
Complexed With Beta-2 Microglobulin And Muc1 Vntr
Peptide Sapdtrpa
pdb|1KPU|A Chain A, High Resolution Crystal Structure Of The Mhc Class I
Complex H- 2kbVSV8
pdb|1KPV|A Chain A, High Resolution Crystal Structure Of The Mhc Class I
Complex H- 2kbSEV9
pdb|1LK2|A Chain A, 1.35a Crystal Structure Of H-2kb Complexed With The
Gnysfyal Peptide
pdb|1P1Z|A Chain A, X-Ray Crystal Structure Of The Lectin-Like Natural Killer
Cell Receptor Ly-49c Bound To Its Mhc Class I Ligand
H-2kb
pdb|1P4L|A Chain A, Crystal Structure Of Nk Receptor Ly49c Mutant With Its Mhc
Class I Ligand H-2kb
pdb|1RK0|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Herpes Simplex Virus Glycoprotein B
Peptide
pdb|1RK1|A Chain A, Mhc Class I Natural H-2kb Heavy Chain Complexed With
Beta-2 Microglobulin And Herpes Simplex Virus Mutant
Glycoprotein B Peptide
pdb|2FO4|A Chain A, Enhanced Mhc Class I Binding And Immune Responses Through
Anchor Modification Of The Non-Canonical Tumor
Associated Muc1-8 Peptide
pdb|3C8K|A Chain A, The Crystal Structure Of Ly49c Bound To H-2kb
pdb|3CVH|A Chain A, How Tcr-Like Antibody Recognizes Mhc-Bound Peptide
pdb|3CVH|M Chain M, How Tcr-Like Antibody Recognizes Mhc-Bound Peptide
Length = 274
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|3TID|A Chain A, Crystal Structure Of The Lcmv Derived Peptide Gp34 In
Complex With The Murine Mhc Class I H-2 Kb
pdb|3TIE|A Chain A, Crystal Structure Of The Vaccinia Derived Peptide A11r In
Complex With The Murine Mhc Class I H-2 Kb
pdb|3TIE|D Chain D, Crystal Structure Of The Vaccinia Derived Peptide A11r In
Complex With The Murine Mhc Class I H-2 Kb
Length = 284
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 36 DDTEFVRFDSDAENPRYEP 54
>pdb|2MHA|A Chain A, Crystal Structure Of The Major Histocompatibility Complex
Class I H-2kb Molecule Containing A Single Viral
Peptide: Implications For Peptide Binding And T-Cell
Receptor Recognition
pdb|2MHA|C Chain C, Crystal Structure Of The Major Histocompatibility Complex
Class I H-2kb Molecule Containing A Single Viral
Peptide: Implications For Peptide Binding And T-Cell
Receptor Recognition
Length = 270
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|3FOL|A Chain A, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Vndiferi
pdb|3FOM|A Chain A, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Iqqsierl
pdb|3FON|A Chain A, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Vndifeai
pdb|3FON|C Chain C, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Vndifeai
Length = 274
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|3P4M|A Chain A, Crystal Structure Of H2-Kb In Complex With The Np205-Lcmv
Epitope Ytvkypnl, An 8-Mer Peptide From The Lcmv
pdb|3P4M|D Chain D, Crystal Structure Of H2-Kb In Complex With The Np205-Lcmv
Epitope Ytvkypnl, An 8-Mer Peptide From The Lcmv
pdb|3P4N|A Chain A, Crystal Structure Of H2-Kb In Complex With The Np205-Pv
Epitope Ytvkfpnm, An 8-Mer Peptide From Pv
pdb|3P4N|D Chain D, Crystal Structure Of H2-Kb In Complex With The Np205-Pv
Epitope Ytvkfpnm, An 8-Mer Peptide From Pv
pdb|3P4O|A Chain A, Crystal Structure Of H2-Kb In Complex With The Mutant
Np205-Lcmv-V3a Epitope Ytakypnl, An 8-Mer Modified
Peptide From The Lcmv
pdb|3P4O|D Chain D, Crystal Structure Of H2-Kb In Complex With The Mutant
Np205-Lcmv-V3a Epitope Ytakypnl, An 8-Mer Modified
Peptide From The Lcmv
Length = 278
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 30 DDTEFVRFDSDAENPRYEP 48
>pdb|1KJ2|H Chain H, Murine Alloreactive Scfv Tcr-peptide-mhc Class I Molecule
Complex
pdb|1KJ2|I Chain I, Murine Alloreactive Scfv Tcr-peptide-mhc Class I Molecule
Complex
pdb|3P9M|A Chain A, Crystal Structure Of H2-Kb In Complex With A Mutant Of The
Chicken Ovalbumin Epitope Ova-G4
pdb|3P9M|D Chain D, Crystal Structure Of H2-Kb In Complex With A Mutant Of The
Chicken Ovalbumin Epitope Ova-G4
Length = 277
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|1FZJ|A Chain A, Mhc Class I Natural Mutant H-2kbm1 Heavy Chain Complexed
With Beta-2 Microglobulin And Vesicular Stomatitis Virus
Nucleoprotein
pdb|1FZK|A Chain A, Mhc Class I Natural Mutant H-2kbm1 Heavy Chain Complexed
With Beta-2 Microglobulin And Sendai Virus Nucleoprotein
Length = 274
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|1KJ3|H Chain H, Mhc Class I H-2kb Molecule Complexed With Pkb1 Peptide
pdb|1KJ3|I Chain I, Mhc Class I H-2kb Molecule Complexed With Pkb1 Peptide
pdb|3PAB|A Chain A, Crystal Structure Of H2-Kb In Complex With A Mutant Of The
Chicken Ovalbumin Epitope Ova-E1
pdb|3PAB|D Chain D, Crystal Structure Of H2-Kb In Complex With A Mutant Of The
Chicken Ovalbumin Epitope Ova-E1
Length = 279
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 30 DDTEFVRFDSDAENPRYEP 48
>pdb|1NAN|H Chain H, Mch Class I H-2kb Molecule Complexed With Pbm1 Peptide
pdb|1NAN|L Chain L, Mch Class I H-2kb Molecule Complexed With Pbm1 Peptide
pdb|1T0M|A Chain A, Conformational Switch In Polymorphic H-2k Molecules
Containing An Hsv Peptide
pdb|1T0M|D Chain D, Conformational Switch In Polymorphic H-2k Molecules
Containing An Hsv Peptide
pdb|2ZSV|C Chain C, Crystal Structure Of H-2kb In Complex With Jhmv Epitope
S598
pdb|2ZSW|A Chain A, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|2ZSW|E Chain E, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|2ZSW|C Chain C, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|2ZSW|G Chain G, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|3P9L|A Chain A, Crystal Structure Of H2-Kb In Complex With The Chicken
Ovalbumin Epitope Ova
pdb|3P9L|D Chain D, Crystal Structure Of H2-Kb In Complex With The Chicken
Ovalbumin Epitope Ova
pdb|2ZSV|A Chain A, Crystal Structure Of H-2kb In Complex With Jhmv Epitope
S598
Length = 278
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|4HKJ|A Chain A, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|E Chain E, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|I Chain I, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|M Chain M, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
Length = 280
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
DD EFV F +D PR+ P
Sbjct: 29 DDTEFVRFDSDAENPRYEP 47
>pdb|2ZOK|A Chain A, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|C Chain C, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|E Chain E, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|G Chain G, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOL|A Chain A, Crystal Structure Of H-2db In Complex With The W513s
Variant Of Jhmv Epitope S510
pdb|2ZOL|C Chain C, Crystal Structure Of H-2db In Complex With The W513s
Variant Of Jhmv Epitope S510
Length = 278
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|1BZ9|A Chain A, Crystal Structure Of Murine Class I Mhc H2-Db Complexed
With A Synthetic Peptide P1027
Length = 277
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 28 DNKEFVRFDSDAENPRYEP 46
>pdb|1HOC|A Chain A, The Three-Dimensional Structure Of H-2db At 2.4 Angstroms
Resolution: Implications For Antigen-Determinant
Selection
Length = 272
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|1LD9|A Chain A, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
pdb|1LD9|D Chain D, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
Length = 268
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|1JUF|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13b, Complexed To H2-Db
Length = 276
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|2CII|A Chain A, The Crystal Structure Of H-2db Complexed With A Partial
Peptide Epitope Suggests An Mhc Class I Assembly-
Intermediate
Length = 275
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|1FFN|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33(C9m)
pdb|1FFN|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33(C9m)
pdb|1FFO|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Synthetic Peptide Gp33 (C9mK1A)
pdb|1FFO|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Synthetic Peptide Gp33 (C9mK1A)
pdb|1FFP|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33 (C9mK1S)
pdb|1FFP|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33 (C9mK1S)
pdb|1YN6|A Chain A, Crystal Structure Of A Mouse Mhc Class I Protein, H2-Db,
In Complex With A Peptide From The Influenza A Acid
Polymerase
pdb|1YN7|A Chain A, Crystal Structure Of A Mouse Mhc Class I Protein, H2-Db,
In Complex With A Mutated Peptide (R7a) Of The Influenza
A Acid Polymerase
Length = 273
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 28 DNKEFVRFDSDAENPRYEP 46
>pdb|1INQ|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13a, Complexed To H2-Db
pdb|3CPL|A Chain A, Crystal Structure Of H-2db In Complex With A Variant M6a
Of The Np366 Peptide From Influenza A Virus
pdb|3CPL|C Chain C, Crystal Structure Of H-2db In Complex With A Variant M6a
Of The Np366 Peptide From Influenza A Virus
Length = 275
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|1LDP|H Chain H, Crystal Structure Of Murine Mhc Class I H-2ld With A
Mixture Of Bound Peptides
Length = 272
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|1CE6|A Chain A, Mhc Class I H-2db Complexed With A Sendai Virus
Nucleoprotein Peptide
Length = 274
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|4HV8|A Chain A, Crystal Structure Of H2db-h155a-npm6i
pdb|4HV8|C Chain C, Crystal Structure Of H2db-h155a-npm6i
Length = 281
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 30 DNKEFVRFDSDAENPRYEP 48
>pdb|4HUX|A Chain A, Crystal Structure Of H2db-h155a-np
Length = 280
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|1QLF|A Chain A, Mhc Class I H-2db Complexed With Glycopeptide K3g
pdb|1N5A|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1WBX|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1WBY|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1ZHB|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|2F74|A Chain A, Murine Mhc Class I H-2db In Complex With Human
B2-Microglobulin And Lcmv-Derived Immunodminant Peptide
Gp33
pdb|2F74|D Chain D, Murine Mhc Class I H-2db In Complex With Human
B2-Microglobulin And Lcmv-Derived Immunodminant Peptide
Gp33
pdb|3CC5|A Chain A, H-2db Complex With Human Gp100
pdb|3CC5|D Chain D, H-2db Complex With Human Gp100
pdb|3CCH|A Chain A, H-2db Complex With Murine Gp100
pdb|3CCH|D Chain D, H-2db Complex With Murine Gp100
pdb|3CCH|G Chain G, H-2db Complex With Murine Gp100
pdb|3CCH|J Chain J, H-2db Complex With Murine Gp100
pdb|3CH1|A Chain A, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|D Chain D, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|G Chain G, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|J Chain J, Crystal Structure Of H-2db In Complex With Chimeric Gp100
Length = 276
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|3BUY|A Chain A, Mhc-I In Complex With Peptide
pdb|3L3H|A Chain A, X-ray Crystal Structure Of The F6a Mutant Of Influenza A
Acid Polymerase Epitope Pa224 Bound To Murine H2-db Mhc
pdb|3PQY|A Chain A, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|F Chain F, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|K Chain K, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|P Chain P, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
Length = 275
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 28 DNKEFVRFDSDAENPRYEP 46
>pdb|1N3N|A Chain A, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|C Chain C, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|E Chain E, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|G Chain G, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
Length = 280
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|1FG2|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|D Chain D, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|G Chain G, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|J Chain J, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPF|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp276 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPG|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Np396 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|3FTG|A Chain A, Crystal Structure Of H2db In Complex With Np366-N3a
Variant Peptide From Influenza
pdb|4HUU|A Chain A, Crystal Structure Of H2db-npm6i
pdb|4HUU|D Chain D, Crystal Structure Of H2db-npm6i
pdb|4HUV|A Chain A, Crystal Structure Of H2db-npm6w
pdb|4HUV|D Chain D, Crystal Structure Of H2db-npm6w
pdb|4HUW|A Chain A, Crystal Structure Of H2db-npm6t
pdb|4HUW|C Chain C, Crystal Structure Of H2db-npm6t
pdb|4HUW|E Chain E, Crystal Structure Of H2db-npm6t
pdb|4HUW|G Chain G, Crystal Structure Of H2db-npm6t
Length = 281
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 30 DNKEFVRFDSDAENPRYEP 48
>pdb|2VE6|A Chain A, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|D Chain D, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|G Chain G, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|J Chain J, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
Length = 277
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 98 DDKEFVAFSADYRAPRHHP 116
D+KEFV F +D PR+ P
Sbjct: 29 DNKEFVRFDSDAENPRYEP 47
>pdb|2QJS|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
Length = 269
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 15 LLMALLSNAHFYQAAEVAGVSRRKG---VFNGESVVVVA 50
L + LLS+AH A VA + RR G N ES V++A
Sbjct: 77 LRLILLSHAHANHAGPVAELKRRTGAKVAANAESAVLLA 115
>pdb|2QIN|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
Length = 269
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 15 LLMALLSNAHFYQAAEVAGVSRRKG---VFNGESVVVVA 50
L + LLS+AH A VA + RR G N ES V++A
Sbjct: 77 LRLILLSHAHACHAGPVAELKRRTGAKVAANAESAVLLA 115
>pdb|1SML|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia
pdb|2AIO|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia Complexed With Hydrolyzed Moxalactam
pdb|2FM6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FM6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FU6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU7|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU7|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU8|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU8|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU9|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2FU9|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2GFJ|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFJ|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFK|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2GFK|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2H6A|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2H6A|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2HB9|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 3)
pdb|2QDT|A Chain A, Structural Basis For The Broad-Spectrum Inhibition Of
Metallo-{beta}- Lactamases: L1- Is38 Complex
Length = 269
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 15 LLMALLSNAHFYQAAEVAGVSRRKG---VFNGESVVVVA 50
L + LLS+AH A VA + RR G N ES V++A
Sbjct: 77 LRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLA 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,127,229
Number of Sequences: 62578
Number of extensions: 95001
Number of successful extensions: 398
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 52
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)