BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046317
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ID76|RGF3_ARATH Root meristem growth factor 3 OS=Arabidopsis thaliana GN=rgf3 PE=2
SV=1
Length = 110
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 55 ILAGRKMAVVKQRCYEKGKKVVAHAKLCKKNNAA---ASRKVSEDGDDKEFVAFSADYRA 111
++ GRK+ + G+K A K+ + N +S+ V EDG VA++ADY
Sbjct: 52 MIRGRKLMMAS------GEKEEAETKMKRGNRETERNSSKSVEEDG----LVAYTADYWR 101
Query: 112 PRHHPPKNN 120
+HHPPKNN
Sbjct: 102 AKHHPPKNN 110
>sp|Q6DSU1|RGF2_ARATH Root meristem growth factor 2 OS=Arabidopsis thaliana GN=RGF2 PE=2
SV=1
Length = 109
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 98 DDKEFVAFSADYRAPRHHPPKNN 120
++ + VA++ADY PRHHPPKNN
Sbjct: 87 EEDDLVAYTADYWKPRHHPPKNN 109
>sp|P47317|ATCL_MYCGE Probable cation-transporting P-type ATPase OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=pacL PE=3
SV=1
Length = 874
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 10 LIVLFLLMALLSNAHFYQAAEVAGVSRRKGVFNGESVV-------VVAIDQT-ILAGRKM 61
L+V + L++ + A V ++++K + SV+ ++ D+T L +M
Sbjct: 282 LVVAIIPEGLVTFINVIFALSVQKLTKQKAIIKYLSVIETLGSVQIICTDKTGTLTQNQM 341
Query: 62 AVVKQRCYEKGKKVVAHAKLCKKNNAAASRKVSEDGDDKE 101
VV C+ + LC NNA+ S+ ++ GD E
Sbjct: 342 KVVDHFCFNSTTQTDLARALCLCNNASISKDANKTGDPTE 381
>sp|Q3E880|RGF1_ARATH Root meristem growth factor 1 OS=Arabidopsis thaliana GN=RGF1 PE=1
SV=2
Length = 116
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 1 MAPMRLKSRLIVLFLLM--ALLSNAHFYQAAEVAGVSRRKGVFNGESVVVVAIDQTILAG 58
M +R+ L+V +L A +SNA+F A S G NG + + I
Sbjct: 1 MVSIRVICYLLVFSVLQVHAKVSNANFNSQAPQMKNSEGLGASNGTQIAKKHAEDVIENR 60
Query: 59 R--KMAVVKQRCYEKGKKVVAHAKLCKKNNAAASRKVSEDGDDKEFVAFSADYRAPRHHP 116
+ K VK EK + ++ KK RK + E + +ADY P HHP
Sbjct: 61 KTLKHVNVKVEANEKNGLEIESKEMVKK------RKNKKRLTKTE--SLTADYSNPGHHP 112
Query: 117 PKNN 120
P++N
Sbjct: 113 PRHN 116
>sp|Q47LM5|RL13_THEFY 50S ribosomal protein L13 OS=Thermobifida fusca (strain YX) GN=rplM
PE=3 SV=1
Length = 149
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 40 VFNGESVVVVAIDQTILAGRKMA---VVKQRCYEKGKKVVAHAKLCKKNNAAASRK 92
V G+ V+VV D+ +L G+K+ + Y G + + +++L KN A A K
Sbjct: 48 VDTGDYVIVVNADKVVLTGKKLEQKRAYRHSGYPGGLRSIPYSELMAKNPARAVEK 103
>sp|Q9Y7B5|ACS2_KLULA Acetyl-coenzyme A synthetase 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=ACS2 PE=3 SV=2
Length = 684
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 19/90 (21%)
Query: 27 QAAEVAGVSRRKGVFNGESVVVV------------------AIDQTILAGRKMAVVKQRC 68
Q +EVAGV + GV G++V V AI I AG +K+R
Sbjct: 132 QVSEVAGVLQSWGVKKGDTVAVYLPMIPAAVVAMLAVARLGAIHSVIFAGFSAGSLKERV 191
Query: 69 YEKGKKVVAHAKLCKKNNAAA-SRKVSEDG 97
+ G KVV K+ ++K+ ++G
Sbjct: 192 VDAGCKVVITCDEGKRGGKTVHTKKIVDEG 221
>sp|P54023|RL13_METJA 50S ribosomal protein L13P OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rpl13p PE=3 SV=2
Length = 137
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 28 AAEVAGVSRRKGVFNGESVVVVAIDQTILAGRKMAVVKQRCYEKGKKVVAHAK 80
A+EVA K V GE +V+V + ++ G K ++K E+ KK VA+ +
Sbjct: 15 ASEVA-----KRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPR 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,107,756
Number of Sequences: 539616
Number of extensions: 1331871
Number of successful extensions: 3467
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3464
Number of HSP's gapped (non-prelim): 8
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)