Query 046317
Match_columns 120
No_of_seqs 14 out of 16
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 10:51:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02950 Conotoxin: Conotoxin; 78.5 0.66 1.4E-05 30.1 0.0 15 4-18 1-15 (75)
2 PF07172 GRP: Glycine rich pro 71.6 5.1 0.00011 28.6 3.1 25 1-26 1-25 (95)
3 PF11153 DUF2931: Protein of u 48.0 15 0.00033 28.3 2.2 23 4-26 1-23 (216)
4 PF01456 Mucin: Mucin-like gly 45.0 17 0.00037 26.0 2.0 16 1-16 1-16 (143)
5 PRK15188 fimbrial chaperone pr 44.5 36 0.00078 27.4 3.9 44 6-52 7-50 (228)
6 PF06404 PSK: Phytosulfokine p 41.7 12 0.00027 26.0 0.8 23 10-32 2-24 (81)
7 TIGR02052 MerP mercuric transp 40.7 23 0.00049 21.4 1.8 20 4-23 1-20 (92)
8 PF11912 DUF3430: Protein of u 35.8 28 0.0006 26.0 1.9 16 4-19 1-17 (212)
9 PF10868 DUF2667: Protein of u 33.8 14 0.00031 26.7 0.1 20 1-20 1-20 (90)
10 PF15240 Pro-rich: Proline-ric 33.1 28 0.00061 27.9 1.7 11 21-31 14-25 (179)
11 PF10270 MMgT: Membrane magnes 31.9 24 0.00052 25.2 1.0 22 7-28 1-22 (106)
12 PF13956 Ibs_toxin: Toxin Ibs, 31.1 24 0.00052 19.3 0.7 13 4-16 2-14 (19)
13 PF11873 DUF3393: Domain of un 30.0 38 0.00081 27.3 1.9 19 4-22 1-19 (204)
14 PRK11443 lipoprotein; Provisio 29.4 41 0.00088 25.0 1.9 20 4-23 1-20 (124)
15 PRK11023 outer membrane lipopr 29.1 40 0.00086 26.0 1.8 17 4-20 4-20 (191)
16 PF08139 LPAM_1: Prokaryotic m 26.9 59 0.0013 18.6 1.8 15 5-19 9-23 (25)
17 COG3683 ABC-type uncharacteriz 26.1 58 0.0013 26.9 2.4 24 4-27 4-27 (213)
18 COG4037 Predicted membrane pro 25.2 62 0.0013 25.7 2.3 25 4-28 21-47 (163)
19 PF15330 SIT: SHP2-interacting 23.9 75 0.0016 23.1 2.4 13 6-18 6-18 (107)
20 PF09716 ETRAMP: Malarial earl 23.8 74 0.0016 22.0 2.3 15 4-18 1-15 (84)
21 PRK14750 kdpF potassium-transp 23.6 92 0.002 18.6 2.3 25 4-28 3-27 (29)
22 PF14060 DUF4252: Domain of un 22.5 92 0.002 22.2 2.6 12 42-53 33-44 (155)
23 PF11587 Prion_bPrPp: Major pr 22.3 49 0.0011 19.7 0.9 16 1-16 1-16 (29)
24 PF03896 TRAP_alpha: Transloco 21.7 73 0.0016 26.8 2.2 18 4-21 1-21 (285)
25 TIGR01626 ytfJ_HI0045 conserve 21.3 1E+02 0.0022 24.2 2.8 62 9-70 6-73 (184)
26 PF11777 DUF3316: Protein of u 21.3 94 0.002 22.1 2.4 10 98-107 91-100 (114)
27 PF05887 Trypan_PARP: Procycli 21.0 32 0.0007 26.9 0.0 28 5-32 4-34 (143)
28 TIGR01843 type_I_hlyD type I s 20.4 95 0.0021 25.0 2.6 19 2-20 2-20 (423)
29 PRK10318 hypothetical protein; 20.3 1.1E+02 0.0025 23.2 2.8 13 4-16 1-13 (121)
30 PF06226 DUF1007: Protein of u 20.3 59 0.0013 25.4 1.3 9 18-26 13-21 (212)
No 1
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=78.55 E-value=0.66 Score=30.06 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHH
Q 046317 4 MRLKSRLIVLFLLMA 18 (120)
Q Consensus 4 ~r~~c~Lillfl~~A 18 (120)
||+.|+|||++|+++
T Consensus 1 mKLt~vliVavLllt 15 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLT 15 (75)
T ss_dssp ---------------
T ss_pred CCcchHHHHHHHHHH
Confidence 789999999999887
No 2
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=71.59 E-value=5.1 Score=28.56 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=11.0
Q ss_pred CCCchHHHHHHHHHHHHHHhhccccc
Q 046317 1 MAPMRLKSRLIVLFLLMALLSNAHFY 26 (120)
Q Consensus 1 m~~~r~~c~Lillfl~~A~~s~ah~n 26 (120)
|+| |.+.+|.|||...-++||+...
T Consensus 1 MaS-K~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MAS-KAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred Cch-hHHHHHHHHHHHHHHHHhhhhh
Confidence 553 4433443333334444655543
No 3
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=48.02 E-value=15 Score=28.35 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHhhccccc
Q 046317 4 MRLKSRLIVLFLLMALLSNAHFY 26 (120)
Q Consensus 4 ~r~~c~Lillfl~~A~~s~ah~n 26 (120)
||.+.+|+++|+|.||-++...+
T Consensus 1 mk~i~~l~l~lll~~C~~~~~~~ 23 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTNPNEP 23 (216)
T ss_pred ChHHHHHHHHHHHHhhcCCCccC
Confidence 67777777888889998776665
No 4
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=44.96 E-value=17 Score=26.01 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=12.8
Q ss_pred CCCchHHHHHHHHHHH
Q 046317 1 MAPMRLKSRLIVLFLL 16 (120)
Q Consensus 1 m~~~r~~c~Lillfl~ 16 (120)
|.==|+||-||||-||
T Consensus 1 MmtcRLLCalLvlaLc 16 (143)
T PF01456_consen 1 MMTCRLLCALLVLALC 16 (143)
T ss_pred CchHHHHHHHHHHHHH
Confidence 4445999999999887
No 5
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=44.50 E-value=36 Score=27.44 Aligned_cols=44 Identities=25% Similarity=0.145 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhhccccccceecCceeeEeeee
Q 046317 6 LKSRLIVLFLLMALLSNAHFYQAAEVAGVSRRKGVFNGESVVVVAID 52 (120)
Q Consensus 6 ~~c~Lillfl~~A~~s~ah~n~~a~~~~vs~~k~~~~g~~~~~t~i~ 52 (120)
++.+|+||++++++...+ ..+.....+++=++..++..++.+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~~---~~Agi~l~~TRvIy~~~~~~~sv~i~ 50 (228)
T PRK15188 7 IFLRLLLLLSAAGLSFAA---QAGGIALGATRVIYPQGSKQTSLPII 50 (228)
T ss_pred HHHHHHHHHHHHHHHHHh---hcceEEECcEEEEEcCCCceEEEEEE
Confidence 455566655555444332 22333333333333333344444443
No 6
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=41.69 E-value=12 Score=26.03 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhccccchhhhhh
Q 046317 10 LIVLFLLMALLSNAHFYQAAEVA 32 (120)
Q Consensus 10 Lillfl~~A~~s~ah~n~~a~~~ 32 (120)
|+|++++++.-+.||+.|.....
T Consensus 2 LLL~~~~~~~~~AARp~p~~~~~ 24 (81)
T PF06404_consen 2 LLLLCSSSTSAAAARPLPASQGA 24 (81)
T ss_pred chHHHHHhhHhhhcCCCCCcccc
Confidence 45556667788999997774433
No 7
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=40.73 E-value=23 Score=21.38 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHHHHhhcc
Q 046317 4 MRLKSRLIVLFLLMALLSNA 23 (120)
Q Consensus 4 ~r~~c~Lillfl~~A~~s~a 23 (120)
||-+.-|++||++....++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 34444455555555555554
No 8
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=35.78 E-value=28 Score=26.03 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=8.3
Q ss_pred chHHHHHHHH-HHHHHH
Q 046317 4 MRLKSRLIVL-FLLMAL 19 (120)
Q Consensus 4 ~r~~c~Lill-fl~~A~ 19 (120)
||++..|||| +++..+
T Consensus 1 MKll~~lilli~~~~~~ 17 (212)
T PF11912_consen 1 MKLLISLILLILLIINF 17 (212)
T ss_pred CcHHHHHHHHHHHHHhh
Confidence 7885444444 333444
No 9
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=33.76 E-value=14 Score=26.69 Aligned_cols=20 Identities=20% Similarity=0.560 Sum_probs=16.9
Q ss_pred CCCchHHHHHHHHHHHHHHh
Q 046317 1 MAPMRLKSRLIVLFLLMALL 20 (120)
Q Consensus 1 m~~~r~~c~Lillfl~~A~~ 20 (120)
|.+.|+..+.|++++|++.+
T Consensus 1 m~slk~st~~ilvvvclsiL 20 (90)
T PF10868_consen 1 MGSLKLSTFVILVVVCLSIL 20 (90)
T ss_pred CCceEEEeeehhHHHHHHHH
Confidence 78888888888888888877
No 10
>PF15240 Pro-rich: Proline-rich
Probab=33.12 E-value=28 Score=27.91 Aligned_cols=11 Identities=18% Similarity=0.042 Sum_probs=5.7
Q ss_pred hcccc-chhhhh
Q 046317 21 SNAHF-YQAAEV 31 (120)
Q Consensus 21 s~ah~-n~~a~~ 31 (120)
|||.- +.+.+.
T Consensus 14 SSAQ~~dEdv~~ 25 (179)
T PF15240_consen 14 SSAQSTDEDVSQ 25 (179)
T ss_pred hhcccccccccc
Confidence 77765 444333
No 11
>PF10270 MMgT: Membrane magnesium transporter; InterPro: IPR018937 This entry represents a novel family of membrane magnesium transporters (MMgT) []. The proteins, MMgT1 and MMgT2, are localised to the Golgi complex and post-Golgi vesicles, including the early endosomes, suggesting that they may provide regulated pathways for Mg2+ transport in the Golgi and post-Golgi organelles of epithelium-derived cells [].
Probab=31.88 E-value=24 Score=25.15 Aligned_cols=22 Identities=23% Similarity=0.084 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhccccchh
Q 046317 7 KSRLIVLFLLMALLSNAHFYQA 28 (120)
Q Consensus 7 ~c~Lillfl~~A~~s~ah~n~~ 28 (120)
++++.+|+|+||..|+..+++-
T Consensus 1 l~~iG~llL~HA~YSa~e~~~~ 22 (106)
T PF10270_consen 1 LTVIGLLLLLHAGYSAYEHRSL 22 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999887766444
No 12
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=31.06 E-value=24 Score=19.27 Aligned_cols=13 Identities=46% Similarity=0.728 Sum_probs=8.0
Q ss_pred chHHHHHHHHHHH
Q 046317 4 MRLKSRLIVLFLL 16 (120)
Q Consensus 4 ~r~~c~Lillfl~ 16 (120)
||+...|++|++.
T Consensus 2 Mk~vIIlvvLLli 14 (19)
T PF13956_consen 2 MKLVIILVVLLLI 14 (19)
T ss_pred ceehHHHHHHHhc
Confidence 5666666666554
No 13
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=29.96 E-value=38 Score=27.31 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHHhhc
Q 046317 4 MRLKSRLIVLFLLMALLSN 22 (120)
Q Consensus 4 ~r~~c~Lillfl~~A~~s~ 22 (120)
||++.+|++++||.+|-+.
T Consensus 1 ~k~l~~~~~~~lL~~Cs~~ 19 (204)
T PF11873_consen 1 KKKLLLLLIALLLSGCSSE 19 (204)
T ss_pred CcCHHHHHHHHHHHHhCCC
Confidence 6788899888889999866
No 14
>PRK11443 lipoprotein; Provisional
Probab=29.37 E-value=41 Score=25.04 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHhhcc
Q 046317 4 MRLKSRLIVLFLLMALLSNA 23 (120)
Q Consensus 4 ~r~~c~Lillfl~~A~~s~a 23 (120)
||.+.++++++||.+|-++.
T Consensus 1 Mk~~~~~~~~~lLsgCa~~~ 20 (124)
T PRK11443 1 MKKFIAPLLALLLSGCQIDP 20 (124)
T ss_pred ChHHHHHHHHHHHHhccCCC
Confidence 67777788888899998865
No 15
>PRK11023 outer membrane lipoprotein; Provisional
Probab=29.09 E-value=40 Score=26.00 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=8.1
Q ss_pred chHHHHHHHHHHHHHHh
Q 046317 4 MRLKSRLIVLFLLMALL 20 (120)
Q Consensus 4 ~r~~c~Lillfl~~A~~ 20 (120)
+.++++|+++|+|.+|.
T Consensus 4 ~~~~~~l~~~~~l~gC~ 20 (191)
T PRK11023 4 LSPLAVLLSALLLQGCV 20 (191)
T ss_pred HHHHHHHHHHHHHhccH
Confidence 33334444444566665
No 16
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=26.85 E-value=59 Score=18.58 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHH
Q 046317 5 RLKSRLIVLFLLMAL 19 (120)
Q Consensus 5 r~~c~Lillfl~~A~ 19 (120)
|++..++.+|.|.+|
T Consensus 9 kil~~l~a~~~LagC 23 (25)
T PF08139_consen 9 KILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHhhc
Confidence 566666666666665
No 17
>COG3683 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=26.10 E-value=58 Score=26.90 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHhhccccch
Q 046317 4 MRLKSRLIVLFLLMALLSNAHFYQ 27 (120)
Q Consensus 4 ~r~~c~Lillfl~~A~~s~ah~n~ 27 (120)
.+.+.+|++++++.+.+-+||+|-
T Consensus 4 ~~~~~~Ll~~~~~~s~~a~AHPHv 27 (213)
T COG3683 4 TRALIALLILCAIISILAYAHPHV 27 (213)
T ss_pred HHHHHHHHHHHHhhhhhhhcCCce
Confidence 355667777777788888899874
No 18
>COG4037 Predicted membrane protein [Function unknown]
Probab=25.22 E-value=62 Score=25.70 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHh--hccccchh
Q 046317 4 MRLKSRLIVLFLLMALL--SNAHFYQA 28 (120)
Q Consensus 4 ~r~~c~Lillfl~~A~~--s~ah~n~~ 28 (120)
.|++|+++-|++++.++ -+.|.+|-
T Consensus 21 prvf~~~Lal~~l~Gll~ph~lnp~QL 47 (163)
T COG4037 21 PRVFCLLLALLALLGLLCPHSLNPEQL 47 (163)
T ss_pred HHHHHHHHHHHHHHHhhCccccCHHHc
Confidence 47899999888887777 55665543
No 19
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=23.92 E-value=75 Score=23.10 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 046317 6 LKSRLIVLFLLMA 18 (120)
Q Consensus 6 ~~c~Lillfl~~A 18 (120)
|+++|+||++.++
T Consensus 6 il~llLll~l~as 18 (107)
T PF15330_consen 6 ILALLLLLSLAAS 18 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 4556655555533
No 20
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=23.84 E-value=74 Score=21.97 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=11.0
Q ss_pred chHHHHHHHHHHHHH
Q 046317 4 MRLKSRLIVLFLLMA 18 (120)
Q Consensus 4 ~r~~c~Lillfl~~A 18 (120)
||+..++.+|.+|++
T Consensus 1 MKi~kv~~ff~~Ll~ 15 (84)
T PF09716_consen 1 MKISKVFYFFAFLLA 15 (84)
T ss_pred CcHHHHHHHHHHHHH
Confidence 778888777777755
No 21
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.61 E-value=92 Score=18.60 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHHhhccccchh
Q 046317 4 MRLKSRLIVLFLLMALLSNAHFYQA 28 (120)
Q Consensus 4 ~r~~c~Lillfl~~A~~s~ah~n~~ 28 (120)
..++|=.+|+++|...+-+|-+|.+
T Consensus 3 ~~vi~g~llv~lLl~YLvYAL~naE 27 (29)
T PRK14750 3 FSIVCGALLVLLLLGYLVYALFNAE 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4456666667777777766666543
No 22
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=22.46 E-value=92 Score=22.24 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=6.2
Q ss_pred cCceeeEeeeee
Q 046317 42 NGESVVVVAIDQ 53 (120)
Q Consensus 42 ~g~~~~~t~i~k 53 (120)
+.+..+.+.|++
T Consensus 33 ~~~~~~~v~i~~ 44 (155)
T PF14060_consen 33 ENKGVTSVNISK 44 (155)
T ss_pred CCCCeEEEEECH
Confidence 444455566643
No 23
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=22.33 E-value=49 Score=19.73 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=10.6
Q ss_pred CCCchHHHHHHHHHHH
Q 046317 1 MAPMRLKSRLIVLFLL 16 (120)
Q Consensus 1 m~~~r~~c~Lillfl~ 16 (120)
|+-.++.|-|++||+.
T Consensus 1 M~k~~lgcWilvLfva 16 (29)
T PF11587_consen 1 MVKSHLGCWILVLFVA 16 (29)
T ss_dssp --TTTTTTHHHHHHHH
T ss_pred CccccccHHHHHHHHH
Confidence 4555688888888875
No 24
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=21.72 E-value=73 Score=26.81 Aligned_cols=18 Identities=67% Similarity=0.840 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHH---HHHhh
Q 046317 4 MRLKSRLIVLFLL---MALLS 21 (120)
Q Consensus 4 ~r~~c~Lillfl~---~A~~s 21 (120)
||++..||||+|| .++++
T Consensus 1 ~~~~~~~~ll~ll~~p~~l~~ 21 (285)
T PF03896_consen 1 MRFLSRLILLALLVFPATLLS 21 (285)
T ss_pred CcchhhHHHHHHHHHHHHHHc
Confidence 6788877777776 55553
No 25
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=21.25 E-value=1e+02 Score=24.19 Aligned_cols=62 Identities=24% Similarity=0.165 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhcccc---chhhhhhccc-cccceecCceeeEeeeeeeeecCchheee--hhhhhh
Q 046317 9 RLIVLFLLMALLSNAHF---YQAAEVAGVS-RRKGVFNGESVVVVAIDQTILAGRKMAVV--KQRCYE 70 (120)
Q Consensus 9 ~Lillfl~~A~~s~ah~---n~~a~~~~vs-~~k~~~~g~~~~~t~i~k~~iggRKm~~~--~~r~~e 70 (120)
+|+++++|++....||- +|..+.-.++ .-..+.++|...-...+...+.|+--++| -++|.-
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~ 73 (184)
T TIGR01626 6 LAAVCGVIFPSSAWAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSA 73 (184)
T ss_pred HHHHHHHHhHHHHhhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCCh
Confidence 34444446555555654 5554333333 12234566666677777778888866644 455543
No 26
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.25 E-value=94 Score=22.06 Aligned_cols=10 Identities=0% Similarity=0.122 Sum_probs=5.9
Q ss_pred CCccceeeec
Q 046317 98 DDKEFVAFSA 107 (120)
Q Consensus 98 ~~~g~vaftA 107 (120)
..+|.+.|.+
T Consensus 91 ~~~G~i~Y~~ 100 (114)
T PF11777_consen 91 QADGQINYQY 100 (114)
T ss_pred ccCCeEEEEe
Confidence 3457666655
No 27
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=21.00 E-value=32 Score=26.95 Aligned_cols=28 Identities=29% Similarity=0.227 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHh---hccccchhhhhh
Q 046317 5 RLKSRLIVLFLLMALL---SNAHFYQAAEVA 32 (120)
Q Consensus 5 r~~c~Lillfl~~A~~---s~ah~n~~a~~~ 32 (120)
|-+|+|-||||..+++ -+|.+.....+.
T Consensus 4 r~l~~LavLL~~A~Lfag~g~AaAadepa~~ 34 (143)
T PF05887_consen 4 RHLCLLAVLLFGAALFAGVGSAAAADEPAVR 34 (143)
T ss_dssp -------------------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6678888877774444 444444433333
No 28
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.41 E-value=95 Score=24.98 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=13.2
Q ss_pred CCchHHHHHHHHHHHHHHh
Q 046317 2 APMRLKSRLIVLFLLMALL 20 (120)
Q Consensus 2 ~~~r~~c~Lillfl~~A~~ 20 (120)
.++|++|+++++|++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (423)
T TIGR01843 2 RFARLITWLIAGLVVIFFL 20 (423)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 3578888888877775443
No 29
>PRK10318 hypothetical protein; Provisional
Probab=20.32 E-value=1.1e+02 Score=23.16 Aligned_cols=13 Identities=23% Similarity=0.375 Sum_probs=9.1
Q ss_pred chHHHHHHHHHHH
Q 046317 4 MRLKSRLIVLFLL 16 (120)
Q Consensus 4 ~r~~c~Lillfl~ 16 (120)
+|++|.|+.|||+
T Consensus 1 ~~~~~~l~~lL~~ 13 (121)
T PRK10318 1 KKILCLLITLLFT 13 (121)
T ss_pred ChhHHHHHHHHHH
Confidence 4677777777666
No 30
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.26 E-value=59 Score=25.38 Aligned_cols=9 Identities=22% Similarity=-0.134 Sum_probs=4.7
Q ss_pred HHhhccccc
Q 046317 18 ALLSNAHFY 26 (120)
Q Consensus 18 A~~s~ah~n 26 (120)
+....||+|
T Consensus 13 ~~~a~AHPH 21 (212)
T PF06226_consen 13 PSPAFAHPH 21 (212)
T ss_pred ccccccCCc
Confidence 344556654
Done!