Query 046317
Match_columns 120
No_of_seqs 14 out of 16
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 19:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1skh_A Major prion protein 2; 34.1 18 0.00062 20.9 1.4 16 1-16 1-16 (30)
2 3q48_A Chaperone CUPB2; IG fol 25.7 34 0.0012 26.6 2.1 15 4-18 9-23 (257)
3 4av2_M PILP protein, type IV p 23.8 17 0.00057 27.4 0.0 17 4-20 1-17 (181)
4 3arc_I Photosystem II reaction 18.9 64 0.0022 19.4 1.9 22 1-22 1-26 (38)
5 1co7_I BPTI, bovine pancreatic 15.6 32 0.0011 23.1 0.0 13 4-16 2-14 (99)
6 1y32_A Humanin; solution struc 14.9 82 0.0028 17.5 1.6 13 1-13 1-13 (26)
7 2j6e_L IGM, FAB light chain; a 14.2 37 0.0013 22.8 0.0 14 4-17 1-14 (234)
8 4dcm_A Ribosomal RNA large sub 13.2 60 0.0021 25.7 1.0 20 98-117 356-375 (375)
9 2qn4_A RASI, alpha-amylase/sub 12.8 52 0.0018 25.0 0.4 10 1-10 1-10 (200)
10 3arc_K Photosystem II reaction 11.0 1.1E+02 0.0037 18.3 1.4 13 10-22 19-31 (37)
No 1
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=34.06 E-value=18 Score=20.88 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=11.9
Q ss_pred CCCchHHHHHHHHHHH
Q 046317 1 MAPMRLKSRLIVLFLL 16 (120)
Q Consensus 1 m~~~r~~c~Lillfl~ 16 (120)
|+-.++-|.|++||+.
T Consensus 1 M~k~~~~cwilvLfva 16 (30)
T 1skh_A 1 MVKSKIGSWILVLFVA 16 (30)
T ss_dssp CCTTTTTTHHHHHHHH
T ss_pred CCcccccHHHHHHHHH
Confidence 5666778888888765
No 2
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=25.75 E-value=34 Score=26.59 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHH
Q 046317 4 MRLKSRLIVLFLLMA 18 (120)
Q Consensus 4 ~r~~c~Lillfl~~A 18 (120)
+..+|.|+++|++++
T Consensus 9 ~~~~~~l~~~l~~~~ 23 (257)
T 3q48_A 9 HSFVAASAVAIALCV 23 (257)
T ss_dssp ---------------
T ss_pred hHHHHHHHHHHHHHH
Confidence 555665555555443
No 3
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=23.83 E-value=17 Score=27.36 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHh
Q 046317 4 MRLKSRLIVLFLLMALL 20 (120)
Q Consensus 4 ~r~~c~Lillfl~~A~~ 20 (120)
||.+++|+.+|+|.+|-
T Consensus 1 Mk~~~ll~~~l~LsgC~ 17 (181)
T 4av2_M 1 MKHYALLISFLALSACS 17 (181)
T ss_dssp -----------------
T ss_pred CchHHHHHHHHhheeeC
Confidence 78899999999999995
No 4
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=18.89 E-value=64 Score=19.43 Aligned_cols=22 Identities=23% Similarity=0.599 Sum_probs=14.3
Q ss_pred CCCchHHHHHHHHHHH----HHHhhc
Q 046317 1 MAPMRLKSRLIVLFLL----MALLSN 22 (120)
Q Consensus 1 m~~~r~~c~Lillfl~----~A~~s~ 22 (120)
|.-.|++.|.+++|+. +.++|+
T Consensus 1 MltLKi~Vy~vV~ffvsLFiFGfLsn 26 (38)
T 3arc_I 1 METLKITVYIVVTFFVLLFVFGFLSG 26 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeeEEeeehhHHHHHHHHHHccccCC
Confidence 4456777777776665 566665
No 5
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=15.64 E-value=32 Score=23.10 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHH
Q 046317 4 MRLKSRLIVLFLL 16 (120)
Q Consensus 4 ~r~~c~Lillfl~ 16 (120)
|..+++.++|||+
T Consensus 2 m~~~~ls~~llll 14 (99)
T 1co7_I 2 MSRLCLSVALLVL 14 (99)
T ss_dssp -------------
T ss_pred cchHHHHHHHHHH
Confidence 4444443333333
No 6
>1y32_A Humanin; solution structure, alzheimer'S disease, neuroprotection, unknown function; NMR {Synthetic} PDB: 2gd3_A
Probab=14.91 E-value=82 Score=17.54 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=9.9
Q ss_pred CCCchHHHHHHHH
Q 046317 1 MAPMRLKSRLIVL 13 (120)
Q Consensus 1 m~~~r~~c~Lill 13 (120)
|+|-.|-|+|++.
T Consensus 1 Ma~rgFsCLLL~~ 13 (26)
T 1y32_A 1 MAPRGFSCLLLLT 13 (26)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCCccEEEEEEc
Confidence 7888888887653
No 7
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=14.16 E-value=37 Score=22.80 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHH
Q 046317 4 MRLKSRLIVLFLLM 17 (120)
Q Consensus 4 ~r~~c~Lillfl~~ 17 (120)
|.++++|++||++.
T Consensus 1 M~~~~~ll~ll~~~ 14 (234)
T 2j6e_L 1 MAGFPLLLTLLTHC 14 (234)
T ss_dssp --------------
T ss_pred CchhHHHHHHHHhh
Confidence 45555555555544
No 8
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=13.25 E-value=60 Score=25.72 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=12.6
Q ss_pred CCccceeeecccCCCCCCCC
Q 046317 98 DDKEFVAFSADYRAPRHHPP 117 (120)
Q Consensus 98 ~~~g~vaftADYh~prhHPP 117 (120)
...||.-+.+=|..|+||||
T Consensus 356 ~~~~F~V~~~~~~~~~~~~~ 375 (375)
T 4dcm_A 356 TNNKFVVLKAVKLEHHHHHH 375 (375)
T ss_dssp ECSSEEEEEEECCC------
T ss_pred eCCCEEEEEEcCccccccCC
Confidence 55899999999999999998
No 9
>2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp}
Probab=12.80 E-value=52 Score=24.95 Aligned_cols=10 Identities=40% Similarity=0.507 Sum_probs=0.0
Q ss_pred CCCchHHHHH
Q 046317 1 MAPMRLKSRL 10 (120)
Q Consensus 1 m~~~r~~c~L 10 (120)
|||..+++.|
T Consensus 1 ~~~~~~~~fL 10 (200)
T 2qn4_A 1 MVSLRLPLIL 10 (200)
T ss_dssp ----------
T ss_pred CccHHHHHHH
Confidence 6777663333
No 10
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=10.98 E-value=1.1e+02 Score=18.31 Aligned_cols=13 Identities=38% Similarity=0.610 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhc
Q 046317 10 LIVLFLLMALLSN 22 (120)
Q Consensus 10 Lillfl~~A~~s~ 22 (120)
.=+||++.|++-.
T Consensus 19 IPv~f~lLafvWQ 31 (37)
T 3arc_K 19 IPVLFLALAFVWQ 31 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4467777787643
Done!