Query 046317
Match_columns 120
No_of_seqs 14 out of 16
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 19:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046317.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046317hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 34.7 14 0.001 20.6 2.5 23 1-23 1-27 (35)
2 d1qled_ f.23.8.1 (D:) Bacteria 22.2 29 0.0021 19.9 2.4 17 5-21 26-42 (43)
3 d1m56d_ f.23.8.1 (D:) Bacteria 18.8 41 0.003 19.1 2.5 17 5-21 25-41 (42)
4 d2g46a1 b.85.7.2 (A:1-119) Vir 16.6 28 0.002 21.3 1.5 20 100-119 100-119 (119)
5 d1xrda1 f.3.1.1 (A:1-52) Light 14.5 35 0.0025 20.3 1.5 24 3-26 10-39 (52)
6 d1fs7a_ a.138.1.3 (A:) Cytochr 14.0 20 0.0015 28.2 0.4 14 103-116 54-67 (471)
7 d1oaha_ a.138.1.3 (A:) Cytochr 13.2 22 0.0016 28.2 0.4 14 103-116 69-82 (482)
8 d2axtk1 f.23.36.1 (K:10-46) Ph 12.7 42 0.003 18.7 1.4 14 9-22 18-31 (37)
9 d2z5da1 d.20.1.1 (A:23-174) Ub 9.3 43 0.0031 21.8 0.7 20 96-118 45-64 (152)
10 d1jata_ d.20.1.1 (A:) Ubiquiti 8.8 37 0.0027 22.2 0.2 19 97-118 50-68 (152)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=34.65 E-value=14 Score=20.55 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=15.6
Q ss_pred CCCchHHHHHHHHHHH----HHHhhcc
Q 046317 1 MAPMRLKSRLIVLFLL----MALLSNA 23 (120)
Q Consensus 1 m~~~r~~c~Lillfl~----~A~~s~a 23 (120)
|.-.|++.|.++.|+. +.++|+-
T Consensus 1 MltLKi~Vy~vV~fFv~lFiFGFLSnD 27 (35)
T d2axti1 1 METLKITVYIVVTFFVLLFVFGFLSGD 27 (35)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEehhhHHHHHHHHHHHhhccCC
Confidence 5567788887777665 6666653
No 2
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=22.24 E-value=29 Score=19.93 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHhh
Q 046317 5 RLKSRLIVLFLLMALLS 21 (120)
Q Consensus 5 r~~c~Lillfl~~A~~s 21 (120)
|+.+.+|++++.+|..+
T Consensus 26 ~~~i~~i~~liflAi~n 42 (43)
T d1qled_ 26 WVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45555666666666653
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=18.77 E-value=41 Score=19.14 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHhh
Q 046317 5 RLKSRLIVLFLLMALLS 21 (120)
Q Consensus 5 r~~c~Lillfl~~A~~s 21 (120)
|+.+..|++++.+|..+
T Consensus 25 ~~~i~~i~~liflAi~n 41 (42)
T d1m56d_ 25 WAAVVIVAALIFLALAN 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44455555555566653
No 4
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}
Probab=16.56 E-value=28 Score=21.29 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=15.6
Q ss_pred ccceeeecccCCCCCCCCCC
Q 046317 100 KEFVAFSADYRAPRHHPPKN 119 (120)
Q Consensus 100 ~g~vaftADYh~prhHPPKn 119 (120)
.=++.|..|||..|-|=++|
T Consensus 100 EL~~dYg~~yw~~r~~~~~~ 119 (119)
T d2g46a1 100 EITISYGDDYWLSRPRLTQN 119 (119)
T ss_dssp EECCCCCSSSCCSSCCCCCC
T ss_pred EEEEecChhHhccCcccccC
Confidence 44788889999988776765
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=14.55 E-value=35 Score=20.25 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHH------HHHhhccccc
Q 046317 3 PMRLKSRLIVLFLL------MALLSNAHFY 26 (120)
Q Consensus 3 ~~r~~c~Lillfl~------~A~~s~ah~n 26 (120)
|-|.+.-+.++++. +.++|+.++|
T Consensus 10 PRr~lva~~~fL~~LAl~IHfiLLSt~rfN 39 (52)
T d1xrda1 10 PRQALVGLATFLFVLALLIHFILLSTERFN 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 44555555555544 4556888775
No 6
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella succinogenes [TaxId: 844]}
Probab=13.98 E-value=20 Score=28.19 Aligned_cols=14 Identities=57% Similarity=0.880 Sum_probs=12.5
Q ss_pred eeeecccCCCCCCC
Q 046317 103 VAFSADYRAPRHHP 116 (120)
Q Consensus 103 vaftADYh~prhHP 116 (120)
-+|+-||..||-|.
T Consensus 54 y~f~~~y~~~RGH~ 67 (471)
T d1fs7a_ 54 YPFSKDYNAPRGHY 67 (471)
T ss_dssp SGGGTCCBCCCCGG
T ss_pred chhhhhccCcCCch
Confidence 68999999999883
No 7
>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=13.17 E-value=22 Score=28.21 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.4
Q ss_pred eeeecccCCCCCCC
Q 046317 103 VAFSADYRAPRHHP 116 (120)
Q Consensus 103 vaftADYh~prhHP 116 (120)
-+|+-||+.||-|.
T Consensus 69 y~F~~dy~~~RGH~ 82 (482)
T d1oaha_ 69 YPFMYEYNETRGHT 82 (482)
T ss_dssp SGGGTCCBCCCCGG
T ss_pred chhhhhccccCCch
Confidence 68999999999883
No 8
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.66 E-value=42 Score=18.69 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhc
Q 046317 9 RLIVLFLLMALLSN 22 (120)
Q Consensus 9 ~Lillfl~~A~~s~ 22 (120)
++=+|||+.|++-.
T Consensus 18 iIPv~f~lLafVWQ 31 (37)
T d2axtk1 18 VIPVLFLALAFVWQ 31 (37)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 44577888887743
No 9
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 H [TaxId: 9606]}
Probab=9.31 E-value=43 Score=21.79 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=13.4
Q ss_pred CCCCccceeeecccCCCCCCCCC
Q 046317 96 DGDDKEFVAFSADYRAPRHHPPK 118 (120)
Q Consensus 96 ~~~~~g~vaftADYh~prhHPPK 118 (120)
+..+...+-|..|| | ..||+
T Consensus 45 gg~f~~~i~fp~~Y--P-~~pP~ 64 (152)
T d2z5da1 45 GGVWKVRVDLPDKY--P-FKSPS 64 (152)
T ss_dssp TCEEEEEEECCTTT--T-TSCCE
T ss_pred CCEEEEEEEecCCC--C-CCCce
Confidence 44556667788999 5 46774
No 10
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Probab=8.81 E-value=37 Score=22.20 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=13.2
Q ss_pred CCCccceeeecccCCCCCCCCC
Q 046317 97 GDDKEFVAFSADYRAPRHHPPK 118 (120)
Q Consensus 97 ~~~~g~vaftADYh~prhHPPK 118 (120)
..+...+-|..|| | ++||+
T Consensus 50 g~f~~~i~fp~~Y--P-~~pP~ 68 (152)
T d1jata_ 50 GIFELELYLPDDY--P-MEAPK 68 (152)
T ss_dssp EEEEEEEECCTTT--T-TSCCE
T ss_pred CEEEEEEecCccC--C-CCCcE
Confidence 3456678888998 4 56774
Done!