Query 046319
Match_columns 135
No_of_seqs 165 out of 1082
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 1.6E-34 3.4E-39 235.6 7.8 104 32-135 38-186 (663)
2 PTZ00400 DnaK-type molecular c 99.9 9.3E-28 2E-32 208.0 11.8 104 31-134 42-187 (663)
3 PTZ00009 heat shock 70 kDa pro 99.9 9.6E-28 2.1E-32 207.6 11.3 104 31-134 5-153 (653)
4 PTZ00186 heat shock 70 kDa pre 99.9 7.1E-28 1.5E-32 208.5 9.7 104 31-134 28-173 (657)
5 PRK13411 molecular chaperone D 99.9 1.7E-27 3.7E-32 206.1 10.9 104 32-135 4-147 (653)
6 PRK13410 molecular chaperone D 99.9 2.6E-27 5.7E-32 205.3 11.1 103 32-134 4-148 (668)
7 PRK05183 hscA chaperone protei 99.9 8.9E-27 1.9E-31 200.5 10.7 106 29-134 18-162 (616)
8 PLN03184 chloroplast Hsp70; Pr 99.9 1.2E-26 2.6E-31 201.4 11.2 103 32-134 41-185 (673)
9 TIGR01991 HscA Fe-S protein as 99.9 1.2E-26 2.6E-31 199.1 10.3 102 33-134 2-142 (599)
10 TIGR02350 prok_dnaK chaperone 99.9 2.8E-26 6.2E-31 196.3 10.3 103 32-134 2-143 (595)
11 PRK00290 dnaK molecular chaper 99.9 3.5E-26 7.5E-31 197.0 10.2 103 32-134 4-146 (627)
12 CHL00094 dnaK heat shock prote 99.9 5.4E-26 1.2E-30 195.8 11.0 103 32-134 4-148 (621)
13 COG0443 DnaK Molecular chapero 99.9 4.4E-26 9.6E-31 195.1 10.0 105 31-135 6-134 (579)
14 KOG0102 Molecular chaperones m 99.9 2E-26 4.3E-31 192.5 6.6 104 32-135 29-174 (640)
15 PF00012 HSP70: Hsp70 protein; 99.9 2E-25 4.3E-30 189.8 9.3 103 32-134 1-148 (602)
16 PRK01433 hscA chaperone protei 99.9 5.4E-25 1.2E-29 188.9 9.8 95 30-134 19-154 (595)
17 PRK11678 putative chaperone; P 99.9 9E-25 2E-29 182.3 9.9 102 32-133 2-161 (450)
18 KOG0101 Molecular chaperones H 99.9 4.9E-25 1.1E-29 187.8 8.4 105 31-135 8-157 (620)
19 KOG0103 Molecular chaperones H 99.9 1E-22 2.2E-27 173.7 5.7 104 32-135 3-151 (727)
20 KOG0104 Molecular chaperones G 99.8 7.8E-21 1.7E-25 163.4 7.5 121 15-135 6-172 (902)
21 PRK13929 rod-share determining 99.3 7.3E-12 1.6E-16 101.0 9.9 91 33-134 7-111 (335)
22 TIGR00904 mreB cell shape dete 99.0 2.7E-09 5.8E-14 85.7 8.1 91 33-134 5-111 (333)
23 PRK13928 rod shape-determining 99.0 3.2E-09 7E-14 85.4 8.4 92 33-134 6-108 (336)
24 PRK13930 rod shape-determining 98.9 1.4E-08 3.1E-13 81.2 9.4 91 33-134 11-113 (335)
25 PRK13927 rod shape-determining 98.8 5.2E-08 1.1E-12 78.1 9.9 91 33-134 8-109 (334)
26 PF06723 MreB_Mbl: MreB/Mbl pr 98.4 5E-07 1.1E-11 73.2 5.2 90 34-133 5-105 (326)
27 COG1077 MreB Actin-like ATPase 98.2 7.2E-06 1.6E-10 66.2 7.6 91 33-133 9-113 (342)
28 TIGR02529 EutJ ethanolamine ut 97.6 0.00031 6.8E-09 54.4 7.3 27 109-135 49-75 (239)
29 PRK15080 ethanolamine utilizat 97.0 0.002 4.4E-08 50.6 6.2 88 18-134 12-101 (267)
30 cd00012 ACTIN Actin; An ubiqui 96.1 0.011 2.5E-07 47.9 5.3 88 34-133 3-107 (371)
31 smart00842 FtsA Cell division 94.5 0.092 2E-06 38.8 5.2 74 33-132 2-78 (187)
32 smart00268 ACTIN Actin. ACTIN 94.1 0.11 2.5E-06 42.0 5.2 43 33-83 4-55 (373)
33 PRK09472 ftsA cell division pr 93.0 0.81 1.8E-05 38.1 8.7 76 30-131 8-86 (420)
34 TIGR01174 ftsA cell division p 92.4 0.74 1.6E-05 37.5 7.6 74 32-131 2-78 (371)
35 PF00370 FGGY_N: FGGY family o 91.8 0.16 3.5E-06 38.7 2.9 21 31-51 1-22 (245)
36 TIGR02628 fuculo_kin_coli L-fu 90.4 0.22 4.7E-06 41.9 2.6 22 30-51 1-23 (465)
37 TIGR00241 CoA_E_activ CoA-subs 89.4 0.3 6.6E-06 37.7 2.5 20 32-51 2-21 (248)
38 PRK10331 L-fuculokinase; Provi 89.4 0.3 6.4E-06 41.1 2.7 22 31-52 3-25 (470)
39 PTZ00280 Actin-related protein 89.4 1.3 2.9E-05 36.6 6.5 44 33-84 7-63 (414)
40 PF14450 FtsA: Cell division p 88.4 0.88 1.9E-05 31.3 4.1 20 33-52 2-21 (120)
41 COG1070 XylB Sugar (pentulose 88.0 0.57 1.2E-05 39.9 3.4 22 29-50 3-24 (502)
42 PRK15027 xylulokinase; Provisi 86.8 0.72 1.6E-05 38.9 3.4 21 32-52 2-23 (484)
43 TIGR01234 L-ribulokinase L-rib 86.6 0.62 1.3E-05 39.9 2.9 18 31-48 2-19 (536)
44 PRK10939 autoinducer-2 (AI-2) 86.0 0.59 1.3E-05 39.8 2.5 21 31-51 4-25 (520)
45 COG0849 ftsA Cell division ATP 86.0 0.77 1.7E-05 38.7 3.1 77 31-133 7-86 (418)
46 PTZ00294 glycerol kinase-like 85.9 0.61 1.3E-05 39.6 2.5 21 31-51 3-24 (504)
47 TIGR01314 gntK_FGGY gluconate 85.7 0.62 1.3E-05 39.5 2.5 20 32-51 2-22 (505)
48 TIGR01311 glycerol_kin glycero 85.6 0.92 2E-05 38.4 3.4 21 31-51 2-23 (493)
49 COG1924 Activator of 2-hydroxy 85.2 1.4 3E-05 36.7 4.2 23 29-51 134-156 (396)
50 PRK04123 ribulokinase; Provisi 85.0 0.8 1.7E-05 39.3 2.9 18 31-48 4-21 (548)
51 TIGR03192 benz_CoA_bzdQ benzoy 85.0 1 2.2E-05 36.3 3.2 28 24-51 26-53 (293)
52 smart00732 YqgFc Likely ribonu 84.7 0.82 1.8E-05 29.7 2.2 20 32-51 3-23 (99)
53 PRK13321 pantothenate kinase; 84.4 1.2 2.6E-05 34.7 3.3 20 32-51 2-21 (256)
54 PLN02295 glycerol kinase 84.4 1.2 2.6E-05 38.0 3.6 21 32-52 2-23 (512)
55 cd00529 RuvC_resolvase Hollida 84.4 1.4 3E-05 31.8 3.4 24 32-55 2-27 (154)
56 PRK13318 pantothenate kinase; 84.3 1.2 2.7E-05 34.5 3.4 20 32-51 2-21 (258)
57 TIGR01315 5C_CHO_kinase FGGY-f 84.1 0.83 1.8E-05 39.3 2.5 20 32-51 2-22 (541)
58 PRK00047 glpK glycerol kinase; 83.7 1.2 2.6E-05 37.7 3.3 21 31-51 6-27 (498)
59 PLN00130 succinate dehydrogena 82.2 0.13 2.8E-06 38.7 -2.7 19 32-50 59-77 (213)
60 PRK13326 pantothenate kinase; 81.2 1.7 3.6E-05 34.3 3.1 21 31-51 7-27 (262)
61 TIGR00671 baf pantothenate kin 81.0 2.1 4.5E-05 33.3 3.5 20 32-51 1-20 (243)
62 COG5026 Hexokinase [Carbohydra 79.4 1.4 3E-05 37.5 2.1 37 18-54 63-102 (466)
63 PF03652 UPF0081: Uncharacteri 78.9 2.1 4.6E-05 30.3 2.7 20 31-50 2-21 (135)
64 PLN02669 xylulokinase 77.3 2 4.4E-05 37.2 2.6 24 29-52 7-31 (556)
65 PF13941 MutL: MutL protein 74.5 3.3 7.1E-05 35.4 3.1 24 33-56 3-28 (457)
66 PF02075 RuvC: Crossover junct 74.4 5.7 0.00012 28.5 4.0 25 32-56 1-27 (149)
67 COG4820 EutJ Ethanolamine util 73.9 36 0.00077 26.6 8.3 22 109-130 81-102 (277)
68 PTZ00452 actin; Provisional 73.5 5.2 0.00011 32.9 4.0 42 34-83 9-60 (375)
69 TIGR03286 methan_mark_15 putat 73.2 3.1 6.7E-05 35.0 2.6 20 31-50 145-164 (404)
70 PF00022 Actin: Actin; InterP 73.2 5.1 0.00011 32.5 3.9 42 34-83 8-54 (393)
71 PRK13331 pantothenate kinase; 73.1 4.1 8.9E-05 32.0 3.2 22 30-51 7-28 (251)
72 PRK13324 pantothenate kinase; 72.1 4.3 9.3E-05 31.9 3.1 20 32-51 2-21 (258)
73 COG1521 Pantothenate kinase ty 72.0 4.2 9E-05 32.1 2.9 21 32-52 2-22 (251)
74 PTZ00004 actin-2; Provisional 71.7 4.7 0.0001 33.0 3.4 43 33-83 9-61 (378)
75 TIGR02261 benz_CoA_red_D benzo 71.6 5.3 0.00011 31.7 3.5 17 32-48 3-19 (262)
76 PRK13320 pantothenate kinase; 71.4 4.7 0.0001 31.3 3.1 21 31-51 3-23 (244)
77 TIGR02259 benz_CoA_red_A benzo 70.2 4 8.6E-05 34.5 2.6 21 31-51 3-23 (432)
78 TIGR02627 rhamnulo_kin rhamnul 68.4 3.1 6.8E-05 34.8 1.7 15 34-48 2-16 (454)
79 PF03309 Pan_kinase: Type III 68.2 6.6 0.00014 29.4 3.3 20 33-52 2-21 (206)
80 KOG2517 Ribulose kinase and re 66.4 5.4 0.00012 34.6 2.7 20 29-48 5-24 (516)
81 PTZ00466 actin-like protein; P 65.4 7.7 0.00017 32.0 3.4 42 34-83 16-67 (380)
82 PRK00039 ruvC Holliday junctio 65.4 5 0.00011 29.4 2.1 18 31-48 3-20 (164)
83 TIGR01312 XylB D-xylulose kina 63.4 5.5 0.00012 33.3 2.2 18 34-51 2-20 (481)
84 PTZ00281 actin; Provisional 63.4 7.6 0.00016 31.8 3.0 43 33-83 9-61 (376)
85 COG4972 PilM Tfp pilus assembl 63.1 14 0.00031 30.4 4.4 43 14-56 177-219 (354)
86 PRK00109 Holliday junction res 61.9 7 0.00015 27.7 2.2 18 32-49 6-23 (138)
87 PF04848 Pox_A22: Poxvirus A22 61.7 13 0.00028 26.9 3.6 27 30-56 1-29 (143)
88 PRK13317 pantothenate kinase; 60.2 12 0.00026 29.7 3.5 20 32-51 4-23 (277)
89 PRK12408 glucokinase; Provisio 59.9 5.8 0.00013 32.0 1.7 22 28-49 14-35 (336)
90 PRK10854 exopolyphosphatase; P 57.2 23 0.0005 30.4 5.0 63 28-100 9-76 (513)
91 PRK13322 pantothenate kinase; 55.7 10 0.00023 29.4 2.4 18 32-49 2-19 (246)
92 PF00349 Hexokinase_1: Hexokin 55.3 12 0.00026 28.4 2.7 17 32-48 65-81 (206)
93 TIGR00250 RNAse_H_YqgF RNAse H 55.3 9.9 0.00021 26.7 2.0 17 33-49 1-17 (130)
94 PF14916 CCDC92: Coiled-coil d 55.0 12 0.00026 23.1 2.2 25 3-27 10-34 (60)
95 PF04312 DUF460: Protein of un 53.4 19 0.00042 25.9 3.3 28 28-55 30-57 (138)
96 COG0816 Predicted endonuclease 53.4 12 0.00027 26.8 2.3 20 31-50 3-22 (141)
97 TIGR03739 PRTRC_D PRTRC system 53.3 45 0.00097 26.6 5.8 15 34-48 1-15 (320)
98 PRK14101 bifunctional glucokin 52.6 9.2 0.0002 33.6 1.9 21 28-48 16-36 (638)
99 COG0554 GlpK Glycerol kinase [ 52.2 8.5 0.00018 33.2 1.5 25 29-53 4-29 (499)
100 PF11104 PilM_2: Type IV pilus 51.0 26 0.00057 28.1 4.1 28 29-56 179-206 (340)
101 TIGR01319 glmL_fam conserved h 50.9 6.7 0.00015 33.6 0.7 14 35-48 1-14 (463)
102 PRK00292 glk glucokinase; Prov 50.3 15 0.00032 29.2 2.5 17 32-48 4-20 (316)
103 TIGR01175 pilM type IV pilus a 46.9 28 0.0006 27.7 3.7 25 31-55 4-30 (348)
104 TIGR03123 one_C_unchar_1 proba 44.7 23 0.0005 28.8 2.9 39 16-55 113-153 (318)
105 PF01869 BcrAD_BadFG: BadF/Bad 43.9 31 0.00067 26.5 3.4 18 33-50 1-18 (271)
106 PRK13917 plasmid segregation p 42.9 51 0.0011 26.7 4.7 17 31-47 3-19 (344)
107 PRK13327 pantothenate kinase; 42.6 24 0.00053 27.4 2.6 35 16-51 99-133 (242)
108 PRK13320 pantothenate kinase; 41.2 21 0.00046 27.7 2.1 19 33-51 117-135 (244)
109 PF14574 DUF4445: Domain of un 40.9 35 0.00076 28.8 3.5 41 34-84 5-45 (412)
110 PLN02362 hexokinase 40.4 15 0.00032 31.8 1.3 56 28-84 94-151 (509)
111 PRK13322 pantothenate kinase; 40.1 23 0.00049 27.5 2.1 19 32-50 118-136 (246)
112 COG1548 Predicted transcriptio 39.5 16 0.00035 29.4 1.2 21 30-51 3-23 (330)
113 PRK11031 guanosine pentaphosph 39.0 43 0.00094 28.7 3.8 33 26-58 2-36 (496)
114 TIGR00671 baf pantothenate kin 38.0 28 0.00062 26.9 2.4 20 30-50 117-136 (243)
115 PRK13311 N-acetyl-D-glucosamin 37.9 26 0.00057 26.8 2.2 20 32-51 2-22 (256)
116 PLN02914 hexokinase 37.9 14 0.00029 32.0 0.6 51 33-83 98-150 (490)
117 PRK13329 pantothenate kinase; 37.6 24 0.00052 27.5 1.9 18 31-48 2-19 (249)
118 PF06277 EutA: Ethanolamine ut 37.0 27 0.00058 30.1 2.2 16 33-48 6-21 (473)
119 PRK13325 bifunctional biotin-- 37.0 35 0.00075 30.1 3.0 25 27-51 335-359 (592)
120 TIGR00228 ruvC crossover junct 35.5 28 0.0006 25.5 1.8 24 32-55 1-26 (156)
121 PF01548 DEDD_Tnp_IS110: Trans 35.5 66 0.0014 22.0 3.7 19 33-51 2-20 (144)
122 PRK10719 eutA reactivating fac 35.4 30 0.00066 29.8 2.3 15 34-48 10-24 (475)
123 PF03484 B5: tRNA synthetase B 35.4 18 0.0004 22.3 0.8 39 94-133 9-52 (70)
124 COG2410 Predicted nuclease (RN 34.5 55 0.0012 24.5 3.3 27 31-57 2-29 (178)
125 PTZ00288 glucokinase 1; Provis 34.3 34 0.00073 28.8 2.4 20 30-49 26-45 (405)
126 PRK03011 butyrate kinase; Prov 33.9 42 0.00091 27.7 2.9 22 32-53 4-25 (358)
127 PLN02596 hexokinase-like 33.3 19 0.00041 31.1 0.7 55 28-83 95-151 (490)
128 COG3894 Uncharacterized metal- 33.1 41 0.00088 29.5 2.7 60 14-82 314-373 (614)
129 TIGR00749 glk glucokinase, pro 31.8 40 0.00087 26.8 2.4 16 34-49 2-17 (316)
130 PLN02405 hexokinase 31.1 20 0.00044 30.9 0.6 56 28-84 94-151 (497)
131 PRK13310 N-acetyl-D-glucosamin 31.0 40 0.00086 26.4 2.2 20 32-51 2-22 (303)
132 KOG3784 Sorting nexin protein 30.7 87 0.0019 26.5 4.2 46 4-50 237-296 (407)
133 PF01968 Hydantoinase_A: Hydan 30.6 57 0.0012 25.8 3.0 26 29-55 77-102 (290)
134 PF11104 PilM_2: Type IV pilus 30.4 26 0.00057 28.1 1.1 16 34-49 1-16 (340)
135 TIGR00555 panK_eukar pantothen 29.9 76 0.0017 25.3 3.6 21 33-53 3-24 (279)
136 PRK13333 pantothenate kinase; 29.1 69 0.0015 24.4 3.1 30 16-50 74-103 (206)
137 KOG2912 Predicted DNA methylas 28.8 31 0.00067 28.7 1.2 29 16-45 89-117 (419)
138 PF05378 Hydant_A_N: Hydantoin 28.5 59 0.0013 23.9 2.6 23 34-56 3-27 (176)
139 PF08735 DUF1786: Putative pyr 27.9 1.1E+02 0.0024 24.2 4.1 26 31-56 168-193 (254)
140 TIGR01865 cas_Csn1 CRISPR-asso 27.8 31 0.00067 31.6 1.2 41 31-72 2-46 (805)
141 PF12565 DUF3747: Protein of u 27.5 1.5E+02 0.0032 22.3 4.6 59 8-66 66-136 (181)
142 PF03263 Cucumo_2B: Cucumoviru 27.5 57 0.0012 22.2 2.1 16 1-16 7-22 (103)
143 PF01385 OrfB_IS605: Probable 27.4 29 0.00064 25.4 0.9 22 31-52 125-146 (227)
144 PRK09557 fructokinase; Reviewe 27.1 50 0.0011 25.8 2.2 20 32-51 2-22 (301)
145 TIGR01175 pilM type IV pilus a 26.9 1.9E+02 0.0042 22.8 5.6 24 32-55 190-213 (348)
146 PF06406 StbA: StbA protein; 26.7 72 0.0016 25.5 3.1 20 34-53 4-23 (318)
147 COG4012 Uncharacterized protei 24.8 1E+02 0.0022 25.0 3.5 23 34-56 231-253 (342)
148 PF07262 DUF1436: Protein of u 24.6 1.3E+02 0.0028 22.1 3.7 44 9-57 74-117 (158)
149 PTZ00107 hexokinase; Provision 24.1 49 0.0011 28.3 1.7 16 33-48 77-92 (464)
150 PRK13328 pantothenate kinase; 23.0 73 0.0016 24.9 2.3 20 31-50 2-21 (255)
151 PRK09698 D-allose kinase; Prov 22.9 71 0.0015 24.8 2.3 22 30-51 4-26 (302)
152 cd01744 GATase1_CPSase Small c 22.8 19 0.00042 26.1 -0.9 28 32-59 1-30 (178)
153 PF02685 Glucokinase: Glucokin 22.0 73 0.0016 25.8 2.2 15 36-50 4-18 (316)
154 PRK10557 hypothetical protein; 21.5 3E+02 0.0065 20.5 5.3 40 8-47 48-94 (192)
155 PF14239 RRXRR: RRXRR protein 21.1 1.1E+02 0.0024 22.9 2.8 21 30-50 51-71 (176)
156 cd02964 TryX_like_family Trypa 20.8 1.3E+02 0.0028 20.2 3.1 34 59-92 95-128 (132)
157 COG1940 NagC Transcriptional r 20.6 1.2E+02 0.0026 23.7 3.2 22 30-51 6-28 (314)
158 COG0145 HyuA N-methylhydantoin 20.2 97 0.0021 27.9 2.8 26 32-57 280-305 (674)
159 TIGR03285 methan_mark_14 putat 20.0 46 0.001 28.0 0.7 13 28-41 192-204 (445)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=235.60 Aligned_cols=104 Identities=68% Similarity=0.979 Sum_probs=100.7
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCChh---
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS--- 108 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~--- 108 (135)
+.|||||||||||+++++|+++||.|++|+|.+||+|+|++++|++|.+|++++..||+||+++.|||||++|+|+.
T Consensus 38 vigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~ 117 (663)
T KOG0100|consen 38 VIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQK 117 (663)
T ss_pred EEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhhh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ------------------------------------------HHHHHHHHcCCCCCcEEEeeCCCccCC
Q 046319 109 ------------------------------------------TKEIAEAYLGQALKNAVVTVPAYFNDS 135 (135)
Q Consensus 109 ------------------------------------------lk~~Ae~~~g~~v~~vVItVPa~F~~~ 135 (135)
||+.||+|+|.+|+++||||||||||+
T Consensus 118 Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDA 186 (663)
T KOG0100|consen 118 DIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDA 186 (663)
T ss_pred hhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchH
Confidence 999999999999999999999999985
No 2
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.95 E-value=9.3e-28 Score=208.02 Aligned_cols=104 Identities=50% Similarity=0.728 Sum_probs=96.8
Q ss_pred ccceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc-CCeeEecHHHHHHHHcCCCCceeecccccCCCCCChh-
Q 046319 31 VMKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS- 108 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~- 108 (135)
.+.||||||||||||++++|++++++|++|++++||+|+|. ++++++|..|+.++.++|.++++++||+||++++|+.
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 35679999999999999999999999999999999999997 4689999999999999999999999999999986641
Q ss_pred ----------------------------------------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 109 ----------------------------------------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 109 ----------------------------------------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
||+.|+.++|.++.+||||||+||++
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~ 187 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFND 187 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCH
Confidence 88899999999999999999999996
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.95 E-value=9.6e-28 Score=207.63 Aligned_cols=104 Identities=74% Similarity=1.033 Sum_probs=97.3
Q ss_pred ccceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCChh--
Q 046319 31 VMKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS-- 108 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~-- 108 (135)
.+.||||||||||||++++|++++|+|+.|++++||+|+|.++++++|..|+.++.++|.++++++||+||++++|+.
T Consensus 5 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~ 84 (653)
T PTZ00009 5 PAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQ 84 (653)
T ss_pred cEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhHh
Confidence 456699999999999999999999999999999999999998899999999999999999999999999999876531
Q ss_pred -------------------------------------------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 109 -------------------------------------------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 109 -------------------------------------------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
||+.|+.++|.++++||||||+||++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~ 153 (653)
T PTZ00009 85 SDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFND 153 (653)
T ss_pred hhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCH
Confidence 88899999999999999999999986
No 4
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.95 E-value=7.1e-28 Score=208.51 Aligned_cols=104 Identities=48% Similarity=0.681 Sum_probs=97.2
Q ss_pred ccceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCChh--
Q 046319 31 VMKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS-- 108 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~-- 108 (135)
.+.||||||||||||++++|++++++|..|++.+||+|+|.+++++||..|+.++..+|.++++++||+||++++|+.
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~ 107 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHH
Confidence 356799999999999999999999999999999999999998899999999999999999999999999999876531
Q ss_pred ----------------------------------------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 109 ----------------------------------------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 109 ----------------------------------------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
||+.|++++|.+++++|||||+||++
T Consensus 108 ~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~ 173 (657)
T PTZ00186 108 KDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFND 173 (657)
T ss_pred HhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCCh
Confidence 88899999999999999999999997
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.95 E-value=1.7e-27 Score=206.09 Aligned_cols=104 Identities=44% Similarity=0.655 Sum_probs=95.9
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcC-CeeEecHHHHHHHHcCCCCceeecccccCCCCCChh--
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS-- 108 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~-~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~-- 108 (135)
+.||||||||||||++++|++++|+|++|++.+||+|+|.+ ++++||..|+.++.++|.++++++|||||++++|+.
T Consensus 4 viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~ 83 (653)
T PRK13411 4 VIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTEEE 83 (653)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchhHH
Confidence 45699999999999999999999999999999999999974 689999999999999999999999999999875421
Q ss_pred -------------------------------------HHHHHHHHcCCCCCcEEEeeCCCccCC
Q 046319 109 -------------------------------------TKEIAEAYLGQALKNAVVTVPAYFNDS 135 (135)
Q Consensus 109 -------------------------------------lk~~Ae~~~g~~v~~vVItVPa~F~~~ 135 (135)
||+.|+.++|.++.++|||||+||++.
T Consensus 84 ~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~ 147 (653)
T PRK13411 84 RSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDA 147 (653)
T ss_pred hhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcH
Confidence 888999999999999999999999973
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.94 E-value=2.6e-27 Score=205.33 Aligned_cols=103 Identities=44% Similarity=0.641 Sum_probs=94.8
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc-CCeeEecHHHHHHHHcCCCCceeecccccCCCCCC----
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSD---- 106 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d---- 106 (135)
+.||||||||||||++++|++++|+|+.|++++||+|+|. ++++++|..|+.++..+|.++++++||+||+++.+
T Consensus 4 viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~~~~ 83 (668)
T PRK13410 4 IVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDELDPE 83 (668)
T ss_pred EEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhhHHh
Confidence 4569999999999999999999999999999999999997 57899999999999999999999999999998632
Q ss_pred ----------------------------hh---------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 107 ----------------------------PS---------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 107 ----------------------------~~---------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
|+ ||+.|+.++|.++++|||||||||++
T Consensus 84 ~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~ 148 (668)
T PRK13410 84 SKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFND 148 (668)
T ss_pred hccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCH
Confidence 11 88899999999999999999999996
No 7
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.94 E-value=8.9e-27 Score=200.52 Aligned_cols=106 Identities=30% Similarity=0.440 Sum_probs=97.0
Q ss_pred ccccceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCCh-
Q 046319 29 RRVMKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDP- 107 (135)
Q Consensus 29 ~~~i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~- 107 (135)
..++.||||||||||||++++|++++++|+.|++.+||+|+|.++++++|..|+.++..+|.++++++||+||+++.|.
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 97 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADIQ 97 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhhh
Confidence 3356679999999999999999999999999999999999999878999999999999999999999999999876431
Q ss_pred -----------------------------h---------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 108 -----------------------------S---------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 108 -----------------------------~---------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
+ ||+.|++++|.++.++|||||+||++
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~ 162 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDD 162 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCH
Confidence 1 88899999999999999999999986
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.94 E-value=1.2e-26 Score=201.40 Aligned_cols=103 Identities=39% Similarity=0.574 Sum_probs=95.0
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc-CCeeEecHHHHHHHHcCCCCceeecccccCCCCCChh--
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS-- 108 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~-- 108 (135)
+.||||||||||||++++|++++++|++|++++||+|+|. ++++++|..|+.++..+|.++++++|||||+++.|..
T Consensus 41 viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~ 120 (673)
T PLN03184 41 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEE 120 (673)
T ss_pred EEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcchhhhh
Confidence 5679999999999999999999999999999999999997 4689999999999999999999999999999864310
Q ss_pred ---------------------------------------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 109 ---------------------------------------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 109 ---------------------------------------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
||+.|+.++|.++.+||||||+||++
T Consensus 121 ~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~ 185 (673)
T PLN03184 121 SKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFND 185 (673)
T ss_pred hhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCH
Confidence 78889999999999999999999986
No 9
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.94 E-value=1.2e-26 Score=199.12 Aligned_cols=102 Identities=30% Similarity=0.366 Sum_probs=94.1
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcC-CeeEecHHHHHHHHcCCCCceeecccccCCCCCCh----
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDP---- 107 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~-~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~---- 107 (135)
.||||||||||||++++|++++++|+.|++.+||+|+|.+ ++++||..|+.++.++|.++++++||+||+++.|+
T Consensus 2 iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~~~ 81 (599)
T TIGR01991 2 VGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKTFS 81 (599)
T ss_pred EEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhhcc
Confidence 4699999999999999999999999999999999999984 58999999999999999999999999999876431
Q ss_pred -------------------------h---------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 108 -------------------------S---------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 108 -------------------------~---------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
. ||+.|++++|.++.++|||||+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~ 142 (599)
T TIGR01991 82 ILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDD 142 (599)
T ss_pred cCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCH
Confidence 1 88899999999999999999999986
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.93 E-value=2.8e-26 Score=196.32 Aligned_cols=103 Identities=49% Similarity=0.727 Sum_probs=94.3
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcC-CeeEecHHHHHHHHcCCCCceeecccccCCCCCC----
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSD---- 106 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~-~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d---- 106 (135)
+.||||||||||||++++|++++++|++|++.+||+|+|.+ +++++|..|+.++.++|.++++++||+||+++.+
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~~ 81 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTEE 81 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHHH
Confidence 45799999999999999999999999999999999999984 5899999999999999999999999999997521
Q ss_pred -------------------------hh---------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 107 -------------------------PS---------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 107 -------------------------~~---------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
|+ ||+.|+.++|.++.++|||||+||++
T Consensus 82 ~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~ 143 (595)
T TIGR02350 82 AKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFND 143 (595)
T ss_pred hhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCH
Confidence 11 88899999999999999999999986
No 11
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.93 E-value=3.5e-26 Score=197.01 Aligned_cols=103 Identities=50% Similarity=0.715 Sum_probs=94.1
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc-CCeeEecHHHHHHHHcCCCCceeecccccCCCCCC----
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSD---- 106 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d---- 106 (135)
+.||||||||||||++++|.+++++|++|++.+||+|+|. ++++++|..|+.++.++|.++++++|||||++..+
T Consensus 4 viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~~ 83 (627)
T PRK00290 4 IIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQKD 83 (627)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHHHH
Confidence 4569999999999999999999999999999999999997 67999999999999999999999999999987210
Q ss_pred --------------------------hh---------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 107 --------------------------PS---------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 107 --------------------------~~---------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
|+ ||+.|+.++|.++.++|||||+||++
T Consensus 84 ~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~ 146 (627)
T PRK00290 84 IKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFND 146 (627)
T ss_pred hhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCH
Confidence 11 88899999999999999999999986
No 12
>CHL00094 dnaK heat shock protein 70
Probab=99.93 E-value=5.4e-26 Score=195.76 Aligned_cols=103 Identities=42% Similarity=0.587 Sum_probs=94.4
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcC-CeeEecHHHHHHHHcCCCCceeecccccCCCCCCh---
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDP--- 107 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~-~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~--- 107 (135)
+.||||||||||||++++|++++++|+.|++.+||+|+|.+ +++++|..|+..+..+|.++++++||+||+++++.
T Consensus 4 viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~~~ 83 (621)
T CHL00094 4 VVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEISEE 83 (621)
T ss_pred eEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHHhh
Confidence 55799999999999999999999999999999999999974 68999999999999999999999999999986321
Q ss_pred -----------------------------h---------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 108 -----------------------------S---------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 108 -----------------------------~---------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
+ |++.|+.++|.++.++|||||+||++
T Consensus 84 ~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~ 148 (621)
T CHL00094 84 AKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFND 148 (621)
T ss_pred hhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCH
Confidence 1 88899999999999999999999986
No 13
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.4e-26 Score=195.06 Aligned_cols=105 Identities=44% Similarity=0.568 Sum_probs=94.3
Q ss_pred ccceEeccCCceEEEEEeCC-eEEEEECCCCCeeeeEEEEEcCC-eeEecHHHHHHHHcCCCCceeecccccCCCC----
Q 046319 31 VMKTWVSLFLISCVGVWKND-RVQIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVATNPQNTVFDAKLLIRRRF---- 104 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g-~~~ii~n~~g~~~~PS~V~~~~~-~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~---- 104 (135)
.+.||||||||||||+++++ .+.++.|..|.+.+||+|+|.++ ++++|..|++++..+|.++++.+||++|+.-
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~~~ 85 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNGLK 85 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCCCc
Confidence 34569999999999999988 79999999999999999999954 6999999999999999999999999999641
Q ss_pred ----------CChh--------HHHHHHHHcCCCCCcEEEeeCCCccCC
Q 046319 105 ----------SDPS--------TKEIAEAYLGQALKNAVVTVPAYFNDS 135 (135)
Q Consensus 105 ----------~d~~--------lk~~Ae~~~g~~v~~vVItVPa~F~~~ 135 (135)
..++ ||+.||.++|.+++++||||||||+|+
T Consensus 86 ~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~ 134 (579)
T COG0443 86 ISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDA 134 (579)
T ss_pred ceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHH
Confidence 1111 999999999999999999999999974
No 14
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-26 Score=192.46 Aligned_cols=104 Identities=58% Similarity=0.803 Sum_probs=99.7
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc-CCeeEecHHHHHHHHcCCCCceeecccccCCCCCChh--
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS-- 108 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~-- 108 (135)
+.|||+||||||+|++.++.+.++.|.+|.|++||+|+|+ ++++++|..|++++..||.|+++.-||+|||+|+|++
T Consensus 29 vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~evq 108 (640)
T KOG0102|consen 29 VIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEVQ 108 (640)
T ss_pred eeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHHH
Confidence 4558999999999999999999999999999999999997 6799999999999999999999999999999999998
Q ss_pred ---------------------------------------HHHHHHHHcCCCCCcEEEeeCCCccCC
Q 046319 109 ---------------------------------------TKEIAEAYLGQALKNAVVTVPAYFNDS 135 (135)
Q Consensus 109 ---------------------------------------lk~~Ae~~~g~~v~~vVItVPa~F~~~ 135 (135)
||+.|++|+|.++.++||||||||||+
T Consensus 109 ~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfnds 174 (640)
T KOG0102|consen 109 KDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDS 174 (640)
T ss_pred HHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHH
Confidence 999999999999999999999999984
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.92 E-value=2e-25 Score=189.83 Aligned_cols=103 Identities=48% Similarity=0.763 Sum_probs=90.4
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCChh---
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS--- 108 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~--- 108 (135)
|.|||||||||+||++++|.++++.|+.|+|.+||+|+|.++++++|..|...+.++|+++++++|||||++++++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 45799999999999999999999999999999999999998899999999999999999999999999999887744
Q ss_pred ------------------------------------------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 109 ------------------------------------------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 109 ------------------------------------------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
|++.|++++|.++.+||||||++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~ 148 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTD 148 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--H
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhh
Confidence 88899999999999999999999985
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.92 E-value=5.4e-25 Score=188.91 Aligned_cols=95 Identities=25% Similarity=0.310 Sum_probs=86.2
Q ss_pred cccceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCCh--
Q 046319 30 RVMKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDP-- 107 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~-- 107 (135)
.++.||||||||||||++.+|++++++|++|++++||+|+|.++++++|..| +++++||+||++++|.
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 3566799999999999999999999999999999999999998889999987 6899999999987541
Q ss_pred ------------------------------h---------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 108 ------------------------------S---------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 108 ------------------------------~---------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
+ ||+.|+.++|.++.+|||||||||++
T Consensus 89 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~ 154 (595)
T PRK01433 89 TPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFND 154 (595)
T ss_pred chhhHhhhhheeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCH
Confidence 0 88999999999999999999999996
No 17
>PRK11678 putative chaperone; Provisional
Probab=99.91 E-value=9e-25 Score=182.32 Aligned_cols=102 Identities=21% Similarity=0.209 Sum_probs=91.0
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc----------------------------------------
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT---------------------------------------- 71 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~---------------------------------------- 71 (135)
+.|||||||||+||++++|++++++++.|++.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 4579999999999999999999999999999999999994
Q ss_pred -CCeeEecHHHHHHHHcCCCCc--eeecccccCCCCCC------hh---------HHHHHHHHcCCCCCcEEEeeCCCcc
Q 046319 72 -DTERLIGDAAKNQVATNPQNT--VFDAKLLIRRRFSD------PS---------TKEIAEAYLGQALKNAVVTVPAYFN 133 (135)
Q Consensus 72 -~~~~~vG~~A~~~~~~~p~~~--i~~~KrllG~~~~d------~~---------lk~~Ae~~~g~~v~~vVItVPa~F~ 133 (135)
+++.++|..|+.+...+|.++ ++++||+||..... ++ ||+.|+.++|.++++||||||+||+
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~ 161 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQ 161 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCccc
Confidence 457789999999999999988 77999999965322 11 8899999999999999999999998
No 18
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.9e-25 Score=187.76 Aligned_cols=105 Identities=71% Similarity=0.958 Sum_probs=100.3
Q ss_pred ccceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCChh--
Q 046319 31 VMKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS-- 108 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~-- 108 (135)
...|||||||+|||+++.+++.+++.|++|++.+||+|+|.++++++|..|+.+...||.++++++||+||+.++|+.
T Consensus 8 ~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v~ 87 (620)
T KOG0101|consen 8 VAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEVQ 87 (620)
T ss_pred ceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhhH
Confidence 345699999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -------------------------------------------HHHHHHHHcCCCCCcEEEeeCCCccCC
Q 046319 109 -------------------------------------------TKEIAEAYLGQALKNAVVTVPAYFNDS 135 (135)
Q Consensus 109 -------------------------------------------lk~~Ae~~~g~~v~~vVItVPa~F~~~ 135 (135)
+|+.|+.++|.++.++|||||+||+++
T Consensus 88 ~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~ 157 (620)
T KOG0101|consen 88 SDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDS 157 (620)
T ss_pred hHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHH
Confidence 999999999999999999999999973
No 19
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1e-22 Score=173.75 Aligned_cols=104 Identities=40% Similarity=0.554 Sum_probs=100.3
Q ss_pred cceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCChh---
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS--- 108 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~--- 108 (135)
+.|||||+.||.+|+.+.+.+++|.|+.+.|.+|++|+|...+|++|.+|+.+...|+.|++..+||++|++|+||.
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~ 82 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQR 82 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhhh
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------------------------HHHHHHHHcCCCCCcEEEeeCCCccCC
Q 046319 109 ------------------------------------------TKEIAEAYLGQALKNAVVTVPAYFNDS 135 (135)
Q Consensus 109 ------------------------------------------lk~~Ae~~~g~~v~~vVItVPa~F~~~ 135 (135)
||++|++.+..++.+|||+||+||+++
T Consensus 83 ~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~ 151 (727)
T KOG0103|consen 83 EIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDS 151 (727)
T ss_pred cccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHH
Confidence 999999999999999999999999974
No 20
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.8e-21 Score=163.44 Aligned_cols=121 Identities=34% Similarity=0.435 Sum_probs=103.7
Q ss_pred HHHHHHHh-cCccccccccceEeccCCceEEEEEeCC-eEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCc
Q 046319 15 LLRLLLLR-RGRKRRRRVMKTWVSLFLISCVGVWKND-RVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNT 92 (135)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~i~gID~GTtns~vA~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~ 92 (135)
||.+++.. +--.+....+.+||+||.+..||+++.| +++|+.|.+++|++|++|+|.+++|++|.+|..++.++|.++
T Consensus 6 llv~l~~~~~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~ 85 (902)
T KOG0104|consen 6 LLVILLLCLFVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQST 85 (902)
T ss_pred HHHHHHHHHHhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHH
Confidence 44444444 2222333334458999999999999888 689999999999999999999999999999999999999999
Q ss_pred eeecccccCCCCCChh--------------------------------------------HHHHHHHHcCCCCCcEEEee
Q 046319 93 VFDAKLLIRRRFSDPS--------------------------------------------TKEIAEAYLGQALKNAVVTV 128 (135)
Q Consensus 93 i~~~KrllG~~~~d~~--------------------------------------------lk~~Ae~~~g~~v~~vVItV 128 (135)
+..+|.++|++.++|. .+..||.+...+|+++||||
T Consensus 86 ~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTV 165 (902)
T KOG0104|consen 86 YRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITV 165 (902)
T ss_pred HHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeC
Confidence 9999999999988865 67789999999999999999
Q ss_pred CCCccCC
Q 046319 129 PAYFNDS 135 (135)
Q Consensus 129 Pa~F~~~ 135 (135)
|.||+++
T Consensus 166 P~~F~qa 172 (902)
T KOG0104|consen 166 PPFFNQA 172 (902)
T ss_pred CcccCHH
Confidence 9999974
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.34 E-value=7.3e-12 Score=100.98 Aligned_cols=91 Identities=24% Similarity=0.229 Sum_probs=65.7
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcC-Ce--eEecHHHHHHHHcCCCCceeecccccCC-CCCChh
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTD-TE--RLIGDAAKNQVATNPQNTVFDAKLLIRR-RFSDPS 108 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~-~~--~~vG~~A~~~~~~~p~~~i~~~KrllG~-~~~d~~ 108 (135)
.||||||+|+++ |.+++.. +.|+ ||+|++++ ++ ..||.+|+.+..++|.++... |-+-. ...|.+
T Consensus 7 ~giDlGt~~~~i--~~~~~~~-~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi~~G~I~d~d 75 (335)
T PRK13929 7 IGIDLGTANILV--YSKNKGI-ILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPMKDGVIADYD 75 (335)
T ss_pred EEEEcccccEEE--EECCCcE-EecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecCCCCccCCHH
Confidence 469999999986 4555543 5554 99999984 32 579999999999999987654 33322 223433
Q ss_pred --------HHHHHHHHcCCCCC--cEEEeeCCCccC
Q 046319 109 --------TKEIAEAYLGQALK--NAVVTVPAYFND 134 (135)
Q Consensus 109 --------lk~~Ae~~~g~~v~--~vVItVPa~F~~ 134 (135)
+++.|+..+|..+. ++|||||++|++
T Consensus 76 ~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~ 111 (335)
T PRK13929 76 MTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTA 111 (335)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCH
Confidence 55566677887665 899999999985
No 22
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.96 E-value=2.7e-09 Score=85.71 Aligned_cols=91 Identities=20% Similarity=0.132 Sum_probs=57.9
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCC-----e--eEecHHHHHHHHcCCCCceeecccccCCC-C
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDT-----E--RLIGDAAKNQVATNPQNTVFDAKLLIRRR-F 104 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~-----~--~~vG~~A~~~~~~~p~~~i~~~KrllG~~-~ 104 (135)
.||||||+||+++...+| .++ ..||+|++.++ + ..+|..|+++..+.|.++- ++|-|... .
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~~G~i 73 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMKDGVI 73 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCCCCEE
Confidence 459999999999885433 233 25999999733 3 6699999999888787643 35555432 2
Q ss_pred CChh-----HHHHHHHHc---CCCCCcEEEeeCCCccC
Q 046319 105 SDPS-----TKEIAEAYL---GQALKNAVVTVPAYFND 134 (135)
Q Consensus 105 ~d~~-----lk~~Ae~~~---g~~v~~vVItVPa~F~~ 134 (135)
.|.+ ++..-++.+ +..-..+|||||++|++
T Consensus 74 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~ 111 (333)
T TIGR00904 74 ADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITP 111 (333)
T ss_pred EcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCH
Confidence 2222 222211111 22223799999999985
No 23
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.95 E-value=3.2e-09 Score=85.39 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=58.2
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCC--ee-EecHHHHHHHHcCCCCceeecccccCCCCCChh-
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDT--ER-LIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS- 108 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~--~~-~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~- 108 (135)
.||||||+||+|+.. ++..++. .||+|++..+ .+ .+|..|+++..+.|.+.... ..+-.-...|.+
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~-~pi~~G~i~d~~~ 75 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI-RPLRDGVIADYDV 75 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE-ccCCCCeEecHHH
Confidence 469999999999876 4444454 3999999942 34 69999999988888875532 122111122322
Q ss_pred ----HHHHHHHHc---CCCCCcEEEeeCCCccC
Q 046319 109 ----TKEIAEAYL---GQALKNAVVTVPAYFND 134 (135)
Q Consensus 109 ----lk~~Ae~~~---g~~v~~vVItVPa~F~~ 134 (135)
++..-++.. +.....+|||||++|++
T Consensus 76 ~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~ 108 (336)
T PRK13928 76 TEKMLKYFINKACGKRFFSKPRIMICIPTGITS 108 (336)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCH
Confidence 222222211 22334799999999985
No 24
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=98.87 E-value=1.4e-08 Score=81.19 Aligned_cols=91 Identities=20% Similarity=0.100 Sum_probs=58.4
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcC--C-eeEecHHHHHHHHcCCCCceeecccccCC-CCCChh
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTD--T-ERLIGDAAKNQVATNPQNTVFDAKLLIRR-RFSDPS 108 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~--~-~~~vG~~A~~~~~~~p~~~i~~~KrllG~-~~~d~~ 108 (135)
.||||||+|++++++.++ .++ + +||+|++.+ + ..++|.+|++...+.|.+.- +++-+.. ...|.+
T Consensus 11 vgiDlGt~~t~i~~~~~~--~~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~~G~i~d~~ 79 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG--IVL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AIRPLKDGVIADFE 79 (335)
T ss_pred eEEEcCCCcEEEEECCCC--EEE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--EeecCCCCeEcCHH
Confidence 458999999999886333 233 2 499999974 2 46899999998877776532 2333321 122222
Q ss_pred --------HHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 109 --------TKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 109 --------lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
+.+.+....+.....+|||+|++|++
T Consensus 80 ~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~ 113 (335)
T PRK13930 80 ATEAMLRYFIKKARGRRFFRKPRIVICVPSGITE 113 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCH
Confidence 22223222344468999999999974
No 25
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.79 E-value=5.2e-08 Score=78.06 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=54.9
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCC--e-eEecHHHHHHHHcCCCCceeeccccc--CCC--CC
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDT--E-RLIGDAAKNQVATNPQNTVFDAKLLI--RRR--FS 105 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~--~-~~vG~~A~~~~~~~p~~~i~~~Krll--G~~--~~ 105 (135)
.||||||+|++++.. |+..++ .+||+|++.+. + .++|..|+.+..++|.++... +-+ |.- ++
T Consensus 8 igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~pi~~G~i~d~~ 76 (334)
T PRK13927 8 LGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--RPMKDGVIADFD 76 (334)
T ss_pred eEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--ecCCCCeecCHH
Confidence 358999999998543 322233 26999999743 3 479999999988888764322 223 321 21
Q ss_pred Chh--HHHHHHHHcC--CCCCcEEEeeCCCccC
Q 046319 106 DPS--TKEIAEAYLG--QALKNAVVTVPAYFND 134 (135)
Q Consensus 106 d~~--lk~~Ae~~~g--~~v~~vVItVPa~F~~ 134 (135)
..+ ++..-++.+. ..-..+|||||++|++
T Consensus 77 ~~~~ll~~~~~~~~~~~~~~~~~vi~vP~~~~~ 109 (334)
T PRK13927 77 VTEKMLKYFIKKVHKNFRPSPRVVICVPSGITE 109 (334)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCH
Confidence 111 2222111111 1123899999999985
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=98.38 E-value=5e-07 Score=73.18 Aligned_cols=90 Identities=22% Similarity=0.240 Sum_probs=53.9
Q ss_pred eEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcC--Cee-EecHHHHHHHHcCCCCceeecccccCCCCCChh--
Q 046319 34 TWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTD--TER-LIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS-- 108 (135)
Q Consensus 34 gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~--~~~-~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~-- 108 (135)
||||||+|+.|+.-.+| ++.++ ||+|+++. ++. .+|.+|+.+.-+.|.+ +.-++.+-.--..|.+
T Consensus 5 gIDLGT~~t~i~~~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~-i~~~~Pl~~GvI~D~~~~ 74 (326)
T PF06723_consen 5 GIDLGTSNTRIYVKGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDN-IEVVRPLKDGVIADYEAA 74 (326)
T ss_dssp EEEE-SSEEEEEETTTE---EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTT-EEEE-SEETTEESSHHHH
T ss_pred EEecCcccEEEEECCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCc-cEEEccccCCcccCHHHH
Confidence 59999999999653344 44445 99999984 333 3999999999888886 4444555554455544
Q ss_pred ---HHHHHHHHcCC-C--CCcEEEeeCCCcc
Q 046319 109 ---TKEIAEAYLGQ-A--LKNAVVTVPAYFN 133 (135)
Q Consensus 109 ---lk~~Ae~~~g~-~--v~~vVItVPa~F~ 133 (135)
|+..-++..+. . --++||+||+.-+
T Consensus 75 ~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T 105 (326)
T PF06723_consen 75 EEMLRYFLKKALGRRSFFRPRVVICVPSGIT 105 (326)
T ss_dssp HHHHHHHHHHHHTSS-SS--EEEEEE-SS--
T ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeCCCCC
Confidence 44444444443 2 3569999998765
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.18 E-value=7.2e-06 Score=66.19 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=57.8
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcC--C--ee-EecHHHHHHHHcCCCCceeecccccCCCCCCh
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTD--T--ER-LIGDAAKNQVATNPQNTVFDAKLLIRRRFSDP 107 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~--~--~~-~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~ 107 (135)
.||||||.|+.|++-..| ++.|+ ||+|++.. + .. .+|.+|+.+.-+.|.+. ..++.+----..|-
T Consensus 9 iGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni-~aiRPmkdGVIAd~ 78 (342)
T COG1077 9 IGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI-VAIRPMKDGVIADF 78 (342)
T ss_pred ceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCc-eEEeecCCcEeecH
Confidence 348999999999876444 67777 99999985 2 23 39999999999999873 33333332223332
Q ss_pred h-----HHHHHHHHcC----CCCCcEEEeeCCCcc
Q 046319 108 S-----TKEIAEAYLG----QALKNAVVTVPAYFN 133 (135)
Q Consensus 108 ~-----lk~~Ae~~~g----~~v~~vVItVPa~F~ 133 (135)
+ +|..-+...+ .+--.++|+||.--+
T Consensus 79 ~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T 113 (342)
T COG1077 79 EVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGIT 113 (342)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCcc
Confidence 2 2222222221 122359999997543
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.57 E-value=0.00031 Score=54.35 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCccCC
Q 046319 109 TKEIAEAYLGQALKNAVVTVPAYFNDS 135 (135)
Q Consensus 109 lk~~Ae~~~g~~v~~vVItVPa~F~~~ 135 (135)
+++.|+.++|.++.+||||||++|++.
T Consensus 49 l~~~a~~~~g~~~~~vvisVP~~~~~~ 75 (239)
T TIGR02529 49 LKDTLEQKLGIELTHAATAIPPGTIEG 75 (239)
T ss_pred HHHHHHHHhCCCcCcEEEEECCCCCcc
Confidence 677888899999999999999999863
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.00 E-value=0.002 Score=50.56 Aligned_cols=88 Identities=14% Similarity=0.026 Sum_probs=50.3
Q ss_pred HHHHhcCccccccccceEeccCCceEEEEEeC-Ce-EEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceee
Q 046319 18 LLLLRRGRKRRRRVMKTWVSLFLISCVGVWKN-DR-VQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFD 95 (135)
Q Consensus 18 ~~~~~~~~~~~~~~i~gID~GTtns~vA~~~~-g~-~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~ 95 (135)
..|...|--.++.++.+||+||+..++.+.+. +. ..+.. .||- ....+ .++=.. .+...
T Consensus 12 ~~~~~~~~~~~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~-------~~~~-~vr~G-~i~di~----------~a~~~ 72 (267)
T PRK15080 12 ALINKTPVATESPLKVGVDLGTANIVLAVLDEDGQPVAGAL-------EWAD-VVRDG-IVVDFI----------GAVTI 72 (267)
T ss_pred HHhcCCCCCCCCCEEEEEEccCceEEEEEEcCCCCEEEEEe-------cccc-ccCCC-EEeeHH----------HHHHH
Confidence 34445555457788889999999999766532 11 00000 0111 01111 121111 11222
Q ss_pred cccccCCCCCChhHHHHHHHHcCCCCCcEEEeeCCCccC
Q 046319 96 AKLLIRRRFSDPSTKEIAEAYLGQALKNAVVTVPAYFND 134 (135)
Q Consensus 96 ~KrllG~~~~d~~lk~~Ae~~~g~~v~~vVItVPa~F~~ 134 (135)
+++ +++.|+.++|.++..++++||++|++
T Consensus 73 i~~----------~~~~ae~~~g~~i~~v~~~vp~~~~~ 101 (267)
T PRK15080 73 VRR----------LKATLEEKLGRELTHAATAIPPGTSE 101 (267)
T ss_pred HHH----------HHHHHHHHhCCCcCeEEEEeCCCCCc
Confidence 222 56788889999999999999999964
No 30
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=96.12 E-value=0.011 Score=47.87 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=49.1
Q ss_pred eEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc----------CCeeEecHHHHHHHHcCCCCceeecccccCCC
Q 046319 34 TWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT----------DTERLIGDAAKNQVATNPQNTVFDAKLLIRRR 103 (135)
Q Consensus 34 gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~----------~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~ 103 (135)
+||+||.++.+.+..+..+..+ +||+|+.. +....+|..|...... ..+..+-+++ |.
T Consensus 3 ViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~~~~~~P~~~--G~- 70 (371)
T cd00012 3 VIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-GLELIYPIEH--GI- 70 (371)
T ss_pred EEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC-ceEEcccccC--CE-
Confidence 5899999999998765533322 25665543 2467799988764321 1222222322 22
Q ss_pred CCChh-----HHHHHHHHcCCC--CCcEEEeeCCCcc
Q 046319 104 FSDPS-----TKEIAEAYLGQA--LKNAVVTVPAYFN 133 (135)
Q Consensus 104 ~~d~~-----lk~~Ae~~~g~~--v~~vVItVPa~F~ 133 (135)
..|-+ +...-++.+..+ -..+|+++|.+++
T Consensus 71 i~d~~~~e~~~~~~~~~~l~~~~~~~~vvl~~p~~~~ 107 (371)
T cd00012 71 VVDWDDMEKIWDHLFFNELKVNPEEHPVLLTEPPLNP 107 (371)
T ss_pred EeCHHHHHHHHHHHHHHhcCCCCCCCceEEecCCCCC
Confidence 12222 333333344332 4679999999876
No 31
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.52 E-value=0.092 Score=38.80 Aligned_cols=74 Identities=14% Similarity=0.034 Sum_probs=45.1
Q ss_pred ceEeccCCceEEEEEe---CCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCChhH
Q 046319 33 KTWVSLFLISCVGVWK---NDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPST 109 (135)
Q Consensus 33 ~gID~GTtns~vA~~~---~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~l 109 (135)
.|||+||++.++.+.+ ++.++++... ..||- .+ .++.++-..+.. ..+|+ +
T Consensus 2 ~~lDIGs~~ik~vv~~~~~~~~~~i~g~~----~~~s~-gi-~~G~I~d~~~~~----------~~I~~----------a 55 (187)
T smart00842 2 VGLDIGTSKIKALVAEVDEDGEINVIGVG----EVPSR-GI-RKGVIVDIEAAA----------RAIRE----------A 55 (187)
T ss_pred EEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCC-Cc-cCcEEECHHHHH----------HHHHH----------H
Confidence 4699999999987763 3456665311 22331 12 223444333332 22333 4
Q ss_pred HHHHHHHcCCCCCcEEEeeCCCc
Q 046319 110 KEIAEAYLGQALKNAVVTVPAYF 132 (135)
Q Consensus 110 k~~Ae~~~g~~v~~vVItVPa~F 132 (135)
.+.||+.+|.+++++++++|...
T Consensus 56 i~~ae~~~~~~i~~V~v~i~g~~ 78 (187)
T smart00842 56 VEEAERMAGVKIDSVYVGISGRH 78 (187)
T ss_pred HHHHHHHhCCcccEEEEEEcCCc
Confidence 56788889999999999999753
No 32
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=94.06 E-value=0.11 Score=42.03 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=29.9
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcC-C--------eeEecHHHHH
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTD-T--------ERLIGDAAKN 83 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~-~--------~~~vG~~A~~ 83 (135)
.+||+||.++.+.+..+..|.++ +||+|+... + ..++|..|..
T Consensus 4 iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~ 55 (373)
T smart00268 4 IVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQE 55 (373)
T ss_pred EEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhh
Confidence 34899999999988755544443 388887752 1 3578998853
No 33
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=93.00 E-value=0.81 Score=38.15 Aligned_cols=76 Identities=12% Similarity=0.007 Sum_probs=46.6
Q ss_pred cccceEeccCCceEEEEEe---CCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCC
Q 046319 30 RVMKTWVSLFLISCVGVWK---NDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSD 106 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~---~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d 106 (135)
.++.|||+||+..++.+.+ ++.++++--. ..|| -.+ .++.++-.++.. ..+|.
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~----~~~s-~gi-~~G~I~d~~~~~----------~aI~~-------- 63 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLPDGMVNIIGVG----SCPS-RGM-DKGGVNDLESVV----------KCVQR-------- 63 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcCCCCEEEEEEE----EccC-CCc-cCCEEEcHHHHH----------HHHHH--------
Confidence 5677899999999976653 4456655321 1232 111 123444433332 22333
Q ss_pred hhHHHHHHHHcCCCCCcEEEeeCCC
Q 046319 107 PSTKEIAEAYLGQALKNAVVTVPAY 131 (135)
Q Consensus 107 ~~lk~~Ae~~~g~~v~~vVItVPa~ 131 (135)
..+.||...|.+++++++++|..
T Consensus 64 --av~~ae~~~g~~i~~v~v~i~g~ 86 (420)
T PRK09472 64 --AIDQAELMADCQISSVYLALSGK 86 (420)
T ss_pred --HHHHHHHHhCCcccEEEEEecCc
Confidence 35678889999999999999975
No 34
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=92.43 E-value=0.74 Score=37.47 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=44.8
Q ss_pred cceEeccCCceEEEEEe--C-CeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCChh
Q 046319 32 MKTWVSLFLISCVGVWK--N-DRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDPS 108 (135)
Q Consensus 32 i~gID~GTtns~vA~~~--~-g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~ 108 (135)
+.|||+||++.++.+.+ + +.++++.. -..||- .+.+ +.++-..+... .+|+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~----~~~~~~-gi~~-G~I~d~~~~~~----------~i~~---------- 55 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGV----GTHPSR-GIKK-GVINDIEAAVG----------SIQR---------- 55 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEE----EEecCC-CccC-cEEEcHHHHHH----------HHHH----------
Confidence 45799999999988763 2 33665431 123433 2322 34443333322 2233
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCC
Q 046319 109 TKEIAEAYLGQALKNAVVTVPAY 131 (135)
Q Consensus 109 lk~~Ae~~~g~~v~~vVItVPa~ 131 (135)
+.+.||+.+|.+++++++++|..
T Consensus 56 al~~~e~~~~~~i~~v~~~v~g~ 78 (371)
T TIGR01174 56 AIEAAELMAGCEIRSVIVSISGA 78 (371)
T ss_pred HHHHHHHHhCCcccEEEEEEccc
Confidence 35567888999999999999874
No 35
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=91.82 E-value=0.16 Score=38.71 Aligned_cols=21 Identities=0% Similarity=-0.263 Sum_probs=17.1
Q ss_pred ccceEeccCCceEEEEEe-CCe
Q 046319 31 VMKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~-~g~ 51 (135)
+++|||+|||++.+++++ +|+
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~ 22 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGK 22 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSC
T ss_pred CEEEEEEcccceEEEEEeCCCC
Confidence 356799999999999997 444
No 36
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=90.43 E-value=0.22 Score=41.92 Aligned_cols=22 Identities=5% Similarity=-0.242 Sum_probs=18.0
Q ss_pred cccceEeccCCceEEEEEe-CCe
Q 046319 30 RVMKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~-~g~ 51 (135)
++++|||+|||++.+++++ +|+
T Consensus 1 ~~ilgiD~GTss~K~~l~d~~g~ 23 (465)
T TIGR02628 1 EVILVLDCGATNLRAIAINRQGK 23 (465)
T ss_pred CeEEEEecCCCcEEEEEEcCCCC
Confidence 3577899999999999996 444
No 37
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=89.44 E-value=0.3 Score=37.66 Aligned_cols=20 Identities=5% Similarity=-0.200 Sum_probs=16.7
Q ss_pred cceEeccCCceEEEEEeCCe
Q 046319 32 MKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~ 51 (135)
++|||.|||.++++++++|+
T Consensus 2 ~lGIDiGtts~K~vl~d~g~ 21 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMEDGK 21 (248)
T ss_pred EEEEEcChhheEEEEEcCCE
Confidence 45799999999999997553
No 38
>PRK10331 L-fuculokinase; Provisional
Probab=89.43 E-value=0.3 Score=41.11 Aligned_cols=22 Identities=5% Similarity=-0.201 Sum_probs=17.8
Q ss_pred ccceEeccCCceEEEEEe-CCeE
Q 046319 31 VMKTWVSLFLISCVGVWK-NDRV 52 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~-~g~~ 52 (135)
+++|||+|||++.+++++ +|++
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~~ 25 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGKI 25 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCcE
Confidence 467799999999999995 5543
No 39
>PTZ00280 Actin-related protein 3; Provisional
Probab=89.36 E-value=1.3 Score=36.63 Aligned_cols=44 Identities=23% Similarity=0.135 Sum_probs=29.0
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc-------------CCeeEecHHHHHH
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT-------------DTERLIGDAAKNQ 84 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~-------------~~~~~vG~~A~~~ 84 (135)
.+||+|+.++.+.+..+..|.++ +||+|+.. +.+..+|.+|...
T Consensus 7 iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~ 63 (414)
T PTZ00280 7 VVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAA 63 (414)
T ss_pred EEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhC
Confidence 34899999999998754444433 36666543 1146789887653
No 40
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=88.40 E-value=0.88 Score=31.27 Aligned_cols=20 Identities=5% Similarity=-0.281 Sum_probs=16.0
Q ss_pred ceEeccCCceEEEEEeCCeE
Q 046319 33 KTWVSLFLISCVGVWKNDRV 52 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~ 52 (135)
.+||+|++.+++++++.+..
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEE
T ss_pred EEEEcCCCcEEEEEEEeCCC
Confidence 46899999999999987653
No 41
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=87.99 E-value=0.57 Score=39.93 Aligned_cols=22 Identities=5% Similarity=-0.200 Sum_probs=18.0
Q ss_pred ccccceEeccCCceEEEEEeCC
Q 046319 29 RRVMKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 29 ~~~i~gID~GTtns~vA~~~~g 50 (135)
..+++|||+|||++.+.+++..
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 3567789999999999998644
No 42
>PRK15027 xylulokinase; Provisional
Probab=86.85 E-value=0.72 Score=38.93 Aligned_cols=21 Identities=10% Similarity=-0.342 Sum_probs=16.8
Q ss_pred cceEeccCCceEEEEEe-CCeE
Q 046319 32 MKTWVSLFLISCVGVWK-NDRV 52 (135)
Q Consensus 32 i~gID~GTtns~vA~~~-~g~~ 52 (135)
++|||+|||++.+++++ +|++
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~v 23 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQGEV 23 (484)
T ss_pred EEEEEecccceEEEEEcCCCCE
Confidence 45799999999999996 4543
No 43
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=86.63 E-value=0.62 Score=39.93 Aligned_cols=18 Identities=6% Similarity=-0.474 Sum_probs=16.1
Q ss_pred ccceEeccCCceEEEEEe
Q 046319 31 VMKTWVSLFLISCVGVWK 48 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~ 48 (135)
.++|||+|||++.+++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 356799999999999998
No 44
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=86.02 E-value=0.59 Score=39.85 Aligned_cols=21 Identities=5% Similarity=-0.159 Sum_probs=17.3
Q ss_pred ccceEeccCCceEEEEEe-CCe
Q 046319 31 VMKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~-~g~ 51 (135)
.++|||+|||++.+++++ +|+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~ 25 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN 25 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC
Confidence 467799999999999995 444
No 45
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=85.96 E-value=0.77 Score=38.69 Aligned_cols=77 Identities=19% Similarity=0.117 Sum_probs=47.8
Q ss_pred ccceEeccCCceEEEEE--eCC-eEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCceeecccccCCCCCCh
Q 046319 31 VMKTWVSLFLISCVGVW--KND-RVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNTVFDAKLLIRRRFSDP 107 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~--~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~ 107 (135)
.+.++|+||+..|+.+. .++ .++++-- -..||-= . +++.++--+| +...+|+
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~----g~~~SrG-i-k~G~I~di~~----------~~~sI~~--------- 61 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGV----GSHPSRG-I-KKGVIVDLDA----------AAQSIKK--------- 61 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEee----ecccCcc-c-ccceEEcHHH----------HHHHHHH---------
Confidence 56679999999997665 344 5665532 1112200 0 1233333333 3334444
Q ss_pred hHHHHHHHHcCCCCCcEEEeeCCCcc
Q 046319 108 STKEIAEAYLGQALKNAVVTVPAYFN 133 (135)
Q Consensus 108 ~lk~~Ae~~~g~~v~~vVItVPa~F~ 133 (135)
..+.||.+.|..+++++++++..+.
T Consensus 62 -av~~AE~mag~~i~~v~vs~sG~~i 86 (418)
T COG0849 62 -AVEAAERMAGCEIKSVIVSLSGNHI 86 (418)
T ss_pred -HHHHHHHhcCCCcceEEEEecccee
Confidence 4778999999999999999998764
No 46
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=85.87 E-value=0.61 Score=39.61 Aligned_cols=21 Identities=0% Similarity=-0.141 Sum_probs=17.2
Q ss_pred ccceEeccCCceEEEEEe-CCe
Q 046319 31 VMKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~-~g~ 51 (135)
+++|||+|||++.+++++ +|+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~ 24 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN 24 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC
Confidence 467799999999999996 454
No 47
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=85.69 E-value=0.62 Score=39.55 Aligned_cols=20 Identities=10% Similarity=-0.117 Sum_probs=16.5
Q ss_pred cceEeccCCceEEEEEe-CCe
Q 046319 32 MKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~-~g~ 51 (135)
++|||+|||++.+++++ +|+
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g~ 22 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENGK 22 (505)
T ss_pred EEEEeccccceEEEEEcCCCC
Confidence 56799999999999995 443
No 48
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=85.59 E-value=0.92 Score=38.39 Aligned_cols=21 Identities=10% Similarity=-0.134 Sum_probs=17.1
Q ss_pred ccceEeccCCceEEEEEe-CCe
Q 046319 31 VMKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~-~g~ 51 (135)
+++|||+|||++.+++++ +|+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g~ 23 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDGN 23 (493)
T ss_pred eEEEEecCCCceEEEEECCCCC
Confidence 457799999999999995 443
No 49
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=85.20 E-value=1.4 Score=36.74 Aligned_cols=23 Identities=4% Similarity=-0.239 Sum_probs=19.6
Q ss_pred ccccceEeccCCceEEEEEeCCe
Q 046319 29 RRVMKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 29 ~~~i~gID~GTtns~vA~~~~g~ 51 (135)
....+|||.|+|.+.+.+++++.
T Consensus 134 ~~~~LGID~GSTtTK~VLm~d~~ 156 (396)
T COG1924 134 GMYTLGIDSGSTTTKAVLMEDGK 156 (396)
T ss_pred CcEEEEEecCCcceeEEEEeCCC
Confidence 34567899999999999998876
No 50
>PRK04123 ribulokinase; Provisional
Probab=85.05 E-value=0.8 Score=39.28 Aligned_cols=18 Identities=0% Similarity=-0.538 Sum_probs=16.1
Q ss_pred ccceEeccCCceEEEEEe
Q 046319 31 VMKTWVSLFLISCVGVWK 48 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~ 48 (135)
+++|||+|||++.+++++
T Consensus 4 ~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEEecCCCceEEEEEE
Confidence 467799999999999997
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=85.00 E-value=1 Score=36.28 Aligned_cols=28 Identities=7% Similarity=-0.205 Sum_probs=21.2
Q ss_pred CccccccccceEeccCCceEEEEEeCCe
Q 046319 24 GRKRRRRVMKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 24 ~~~~~~~~i~gID~GTtns~vA~~~~g~ 51 (135)
-|..+.++.+|||.|+|.+.+++++++.
T Consensus 26 ~~~~~~m~~~GIDiGStt~K~Vlld~~~ 53 (293)
T TIGR03192 26 DWKDAKIITCGIDVGSVSSQAVLVCDGE 53 (293)
T ss_pred cccccccEEEEEEeCchhEEEEEEeCCE
Confidence 3444444667899999999999998763
No 52
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=84.65 E-value=0.82 Score=29.67 Aligned_cols=20 Identities=10% Similarity=-0.235 Sum_probs=16.3
Q ss_pred cceEeccCCceEEEEEe-CCe
Q 046319 32 MKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~-~g~ 51 (135)
++|||+|.|++.+|+.+ +|.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~ 23 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGK 23 (99)
T ss_pred EEEEccCCCeEEEEEECCCCC
Confidence 46799999999999985 443
No 53
>PRK13321 pantothenate kinase; Reviewed
Probab=84.41 E-value=1.2 Score=34.67 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=17.2
Q ss_pred cceEeccCCceEEEEEeCCe
Q 046319 32 MKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~ 51 (135)
+++||+|+|++.+|++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 46799999999999998664
No 54
>PLN02295 glycerol kinase
Probab=84.38 E-value=1.2 Score=38.01 Aligned_cols=21 Identities=5% Similarity=-0.088 Sum_probs=17.1
Q ss_pred cceEeccCCceEEEEEe-CCeE
Q 046319 32 MKTWVSLFLISCVGVWK-NDRV 52 (135)
Q Consensus 32 i~gID~GTtns~vA~~~-~g~~ 52 (135)
++|||+|||++.+++++ +|++
T Consensus 2 vlgID~GTts~Ka~l~d~~G~~ 23 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDARP 23 (512)
T ss_pred EEEEecCCCceEEEEECCCCCE
Confidence 46799999999999996 4543
No 55
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=84.36 E-value=1.4 Score=31.80 Aligned_cols=24 Identities=8% Similarity=-0.061 Sum_probs=18.4
Q ss_pred cceEeccCCceEEEEEe--CCeEEEE
Q 046319 32 MKTWVSLFLISCVGVWK--NDRVQII 55 (135)
Q Consensus 32 i~gID~GTtns~vA~~~--~g~~~ii 55 (135)
|+|||.|++|+..|+.+ +++++++
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~ 27 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYL 27 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEE
Confidence 56799999999999984 4455443
No 56
>PRK13318 pantothenate kinase; Reviewed
Probab=84.26 E-value=1.2 Score=34.54 Aligned_cols=20 Identities=5% Similarity=0.044 Sum_probs=17.3
Q ss_pred cceEeccCCceEEEEEeCCe
Q 046319 32 MKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~ 51 (135)
+++||+|+|++.++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 46799999999999998665
No 57
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=84.13 E-value=0.83 Score=39.28 Aligned_cols=20 Identities=0% Similarity=-0.389 Sum_probs=16.3
Q ss_pred cceEeccCCceEEEEEe-CCe
Q 046319 32 MKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~-~g~ 51 (135)
++|||+|||++.+++++ +|+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~ 22 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD 22 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC
Confidence 35699999999999995 454
No 58
>PRK00047 glpK glycerol kinase; Provisional
Probab=83.67 E-value=1.2 Score=37.72 Aligned_cols=21 Identities=5% Similarity=-0.121 Sum_probs=17.2
Q ss_pred ccceEeccCCceEEEEEe-CCe
Q 046319 31 VMKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~-~g~ 51 (135)
.++|||+|||++.+++++ +|+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~ 27 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN 27 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC
Confidence 467799999999999995 454
No 59
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=82.21 E-value=0.13 Score=38.65 Aligned_cols=19 Identities=0% Similarity=-0.448 Sum_probs=15.6
Q ss_pred cceEeccCCceEEEEEeCC
Q 046319 32 MKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g 50 (135)
+.|+|+||+|+|++++++.
T Consensus 59 ~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 59 ILGTGLGTNNAIREEREKS 77 (213)
T ss_pred eeccCCCcchHHHHHHhcc
Confidence 4568999999999988643
No 60
>PRK13326 pantothenate kinase; Reviewed
Probab=81.16 E-value=1.7 Score=34.30 Aligned_cols=21 Identities=5% Similarity=-0.103 Sum_probs=18.0
Q ss_pred ccceEeccCCceEEEEEeCCe
Q 046319 31 VMKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g~ 51 (135)
+++.||.|+||++++++++++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 356699999999999999765
No 61
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=80.97 E-value=2.1 Score=33.28 Aligned_cols=20 Identities=0% Similarity=-0.248 Sum_probs=17.3
Q ss_pred cceEeccCCceEEEEEeCCe
Q 046319 32 MKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~ 51 (135)
|+.||.|+||+.++++++++
T Consensus 1 ~L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 1 LLLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred CEEEEECCCcEEEEEEECCE
Confidence 45689999999999998875
No 62
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=79.36 E-value=1.4 Score=37.47 Aligned_cols=37 Identities=5% Similarity=-0.245 Sum_probs=24.3
Q ss_pred HHHHhcCccccccccceEeccCCceEEEEEe---CCeEEE
Q 046319 18 LLLLRRGRKRRRRVMKTWVSLFLISCVGVWK---NDRVQI 54 (135)
Q Consensus 18 ~~~~~~~~~~~~~~i~gID~GTtns~vA~~~---~g~~~i 54 (135)
.|++..|+-.-+..++.||||.||..+|.+. +|..++
T Consensus 63 ~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 63 TWVAPLPTGNESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred ccccCCCCCCCCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 4556655543333455589999999999884 455554
No 63
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=78.88 E-value=2.1 Score=30.30 Aligned_cols=20 Identities=5% Similarity=-0.393 Sum_probs=17.1
Q ss_pred ccceEeccCCceEEEEEeCC
Q 046319 31 VMKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g 50 (135)
.++|||+|+..+-+|+.+..
T Consensus 2 riL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred eEEEEEeCCCeEEEEEecCC
Confidence 35779999999999999764
No 64
>PLN02669 xylulokinase
Probab=77.26 E-value=2 Score=37.21 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=18.7
Q ss_pred ccccceEeccCCceEEEEEe-CCeE
Q 046319 29 RRVMKTWVSLFLISCVGVWK-NDRV 52 (135)
Q Consensus 29 ~~~i~gID~GTtns~vA~~~-~g~~ 52 (135)
+..++|||+||+.+.+++++ +|++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~g~v 31 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSNLRI 31 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCCCCE
Confidence 34567799999999999986 4543
No 65
>PF13941 MutL: MutL protein
Probab=74.51 E-value=3.3 Score=35.36 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=20.0
Q ss_pred ceEeccCCceEEEEEe--CCeEEEEE
Q 046319 33 KTWVSLFLISCVGVWK--NDRVQIIA 56 (135)
Q Consensus 33 ~gID~GTtns~vA~~~--~g~~~ii~ 56 (135)
+.+|||+|++.+..++ .+..+++-
T Consensus 3 L~~DiGST~Tk~~l~d~~~~~~~~ig 28 (457)
T PF13941_consen 3 LVVDIGSTYTKVTLFDLVDGEPRLIG 28 (457)
T ss_pred EEEEeCCcceEEeEEeccCCccEEEE
Confidence 4589999999999998 77777764
No 66
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=74.42 E-value=5.7 Score=28.51 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=17.1
Q ss_pred cceEeccCCceEEEEEe--CCeEEEEE
Q 046319 32 MKTWVSLFLISCVGVWK--NDRVQIIA 56 (135)
Q Consensus 32 i~gID~GTtns~vA~~~--~g~~~ii~ 56 (135)
|+|||-|++++-.|+++ +++...+.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~ 27 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLID 27 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEE
Confidence 56899999999999984 45555443
No 67
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=73.92 E-value=36 Score=26.59 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCCCcEEEeeCC
Q 046319 109 TKEIAEAYLGQALKNAVVTVPA 130 (135)
Q Consensus 109 lk~~Ae~~~g~~v~~vVItVPa 130 (135)
+|+.+|+.+|.+++++-=++|+
T Consensus 81 lkd~lEk~lGi~~tha~taiPP 102 (277)
T COG4820 81 LKDTLEKQLGIRFTHAATAIPP 102 (277)
T ss_pred HHHHHHHhhCeEeeeccccCCC
Confidence 6788888898888887777775
No 68
>PTZ00452 actin; Provisional
Probab=73.48 E-value=5.2 Score=32.85 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=27.7
Q ss_pred eEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc----------CCeeEecHHHHH
Q 046319 34 TWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT----------DTERLIGDAAKN 83 (135)
Q Consensus 34 gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~----------~~~~~vG~~A~~ 83 (135)
.||+|+.++.+++..+..|.++ +||+|... +.+.++|.+|..
T Consensus 9 ViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~ 60 (375)
T PTZ00452 9 VIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQA 60 (375)
T ss_pred EEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhc
Confidence 3899999999999865555433 25555442 224578988753
No 69
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=73.22 E-value=3.1 Score=35.00 Aligned_cols=20 Identities=10% Similarity=-0.165 Sum_probs=17.3
Q ss_pred ccceEeccCCceEEEEEeCC
Q 046319 31 VMKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g 50 (135)
+.+|||.|+|.+.+++++++
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~ 164 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDN 164 (404)
T ss_pred EEEEEEcChhheeeEEEcCC
Confidence 45679999999999999866
No 70
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=73.15 E-value=5.1 Score=32.46 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=29.1
Q ss_pred eEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCC-----eeEecHHHHH
Q 046319 34 TWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDT-----ERLIGDAAKN 83 (135)
Q Consensus 34 gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~-----~~~vG~~A~~ 83 (135)
.||+|+.++.+.+..+..|.+ .+||++.-... ...+|..+..
T Consensus 8 ViD~Gs~~~k~G~age~~P~~--------v~ps~~~~~~~~~~~~~~~~g~~~~~ 54 (393)
T PF00022_consen 8 VIDNGSSTIKAGFAGEDLPRV--------VIPSVVGRPRDKNSSNDYYVGDEALS 54 (393)
T ss_dssp EEEECSSEEEEEETTSSS-SE--------EEESEEEEESSSSSSSSCEETHHHHH
T ss_pred EEECCCceEEEEECCCCCCCC--------cCCCccccccccccceeEEeeccccc
Confidence 489999999999864444443 34888877532 4689998544
No 71
>PRK13331 pantothenate kinase; Reviewed
Probab=73.13 E-value=4.1 Score=32.00 Aligned_cols=22 Identities=5% Similarity=-0.162 Sum_probs=18.5
Q ss_pred cccceEeccCCceEEEEEeCCe
Q 046319 30 RVMKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~~g~ 51 (135)
+.++.||.|+||++++++++++
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 3456799999999999998765
No 72
>PRK13324 pantothenate kinase; Reviewed
Probab=72.12 E-value=4.3 Score=31.93 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=17.0
Q ss_pred cceEeccCCceEEEEEeCCe
Q 046319 32 MKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~ 51 (135)
++.||.|+||++.+++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 45689999999999998654
No 73
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=71.98 E-value=4.2 Score=32.05 Aligned_cols=21 Identities=5% Similarity=-0.089 Sum_probs=17.7
Q ss_pred cceEeccCCceEEEEEeCCeE
Q 046319 32 MKTWVSLFLISCVGVWKNDRV 52 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~ 52 (135)
++.||.|+|++..|++++++.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~~ 22 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGKV 22 (251)
T ss_pred eEEEEeCCCeEEEEEecCCeE
Confidence 456899999999999987654
No 74
>PTZ00004 actin-2; Provisional
Probab=71.71 E-value=4.7 Score=32.99 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=27.6
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc----------CCeeEecHHHHH
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT----------DTERLIGDAAKN 83 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~----------~~~~~vG~~A~~ 83 (135)
..||+|+.++.+.+..+..|.++ +||++... +...++|..|..
T Consensus 9 vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~ 61 (378)
T PTZ00004 9 AVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQD 61 (378)
T ss_pred EEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhc
Confidence 34899999999998755544432 35555442 224578887753
No 75
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=71.65 E-value=5.3 Score=31.65 Aligned_cols=17 Identities=0% Similarity=-0.421 Sum_probs=15.3
Q ss_pred cceEeccCCceEEEEEe
Q 046319 32 MKTWVSLFLISCVGVWK 48 (135)
Q Consensus 32 i~gID~GTtns~vA~~~ 48 (135)
..|||.|+|.+.+++++
T Consensus 3 ~~GIDiGStttK~Vlid 19 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFE 19 (262)
T ss_pred EEEEEcCcccEEEEEEe
Confidence 35799999999999998
No 76
>PRK13320 pantothenate kinase; Reviewed
Probab=71.44 E-value=4.7 Score=31.34 Aligned_cols=21 Identities=10% Similarity=-0.059 Sum_probs=17.9
Q ss_pred ccceEeccCCceEEEEEeCCe
Q 046319 31 VMKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g~ 51 (135)
+++.||.|+|++..+++++++
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 456699999999999998765
No 77
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=70.17 E-value=4 Score=34.53 Aligned_cols=21 Identities=0% Similarity=-0.292 Sum_probs=17.5
Q ss_pred ccceEeccCCceEEEEEeCCe
Q 046319 31 VMKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g~ 51 (135)
+.+|||.|+|.+.+.+++++.
T Consensus 3 y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred eEEEEEcCchhEEEEEEcCCC
Confidence 356799999999999998664
No 78
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=68.43 E-value=3.1 Score=34.79 Aligned_cols=15 Identities=7% Similarity=-0.467 Sum_probs=13.6
Q ss_pred eEeccCCceEEEEEe
Q 046319 34 TWVSLFLISCVGVWK 48 (135)
Q Consensus 34 gID~GTtns~vA~~~ 48 (135)
+||+|||++.+++++
T Consensus 2 aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 2 AVDLGASSGRVMLAS 16 (454)
T ss_pred cEeccCCchheEEEE
Confidence 599999999999985
No 79
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=68.21 E-value=6.6 Score=29.42 Aligned_cols=20 Identities=5% Similarity=-0.202 Sum_probs=15.9
Q ss_pred ceEeccCCceEEEEEeCCeE
Q 046319 33 KTWVSLFLISCVGVWKNDRV 52 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~ 52 (135)
+.||.|+|++..|++++++.
T Consensus 2 L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEE-SSEEEEEEEETTEE
T ss_pred EEEEECCCeEEEEEEECCEE
Confidence 45899999999999987743
No 80
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=66.40 E-value=5.4 Score=34.59 Aligned_cols=20 Identities=10% Similarity=-0.192 Sum_probs=17.7
Q ss_pred ccccceEeccCCceEEEEEe
Q 046319 29 RRVMKTWVSLFLISCVGVWK 48 (135)
Q Consensus 29 ~~~i~gID~GTtns~vA~~~ 48 (135)
..+++|||.|||.+.+++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 45788999999999999997
No 81
>PTZ00466 actin-like protein; Provisional
Probab=65.44 E-value=7.7 Score=31.96 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=27.6
Q ss_pred eEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc----------CCeeEecHHHHH
Q 046319 34 TWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT----------DTERLIGDAAKN 83 (135)
Q Consensus 34 gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~----------~~~~~vG~~A~~ 83 (135)
.||.|+.++.+.+..+..|.++ +||+|... .+..++|.+|..
T Consensus 16 ViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~ 67 (380)
T PTZ00466 16 IIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEE 67 (380)
T ss_pred EEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhh
Confidence 3899999999998855544433 25555432 235678988754
No 82
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=65.40 E-value=5 Score=29.40 Aligned_cols=18 Identities=11% Similarity=-0.112 Sum_probs=15.9
Q ss_pred ccceEeccCCceEEEEEe
Q 046319 31 VMKTWVSLFLISCVGVWK 48 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~ 48 (135)
.|+|||-|++++-.|+.+
T Consensus 3 ~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIE 20 (164)
T ss_pred EEEEEccccCceeEEEEE
Confidence 477899999999999985
No 83
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=63.40 E-value=5.5 Score=33.25 Aligned_cols=18 Identities=0% Similarity=-0.520 Sum_probs=15.3
Q ss_pred eEeccCCceEEEEEe-CCe
Q 046319 34 TWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 34 gID~GTtns~vA~~~-~g~ 51 (135)
|||+|||++.+++++ +|+
T Consensus 2 gIDiGtt~ik~~l~d~~g~ 20 (481)
T TIGR01312 2 GIDLGTSGVKALLVDEQGE 20 (481)
T ss_pred ceeecCcceEEEEECCCCC
Confidence 589999999999996 454
No 84
>PTZ00281 actin; Provisional
Probab=63.39 E-value=7.6 Score=31.80 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=27.3
Q ss_pred ceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEc----------CCeeEecHHHHH
Q 046319 33 KTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFT----------DTERLIGDAAKN 83 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~----------~~~~~vG~~A~~ 83 (135)
..||+|+.++.+++..+..|.++ +||+|... +...++|..|..
T Consensus 9 vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~ 61 (376)
T PTZ00281 9 LVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 61 (376)
T ss_pred EEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhc
Confidence 34899999999999755544432 25554432 224568887653
No 85
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.12 E-value=14 Score=30.44 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCccccccccceEeccCCceEEEEEeCCeEEEEE
Q 046319 14 QLLRLLLLRRGRKRRRRVMKTWVSLFLISCVGVWKNDRVQIIA 56 (135)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~gID~GTtns~vA~~~~g~~~ii~ 56 (135)
.++++|+..++-.....-++.+|.|-|+|.++++.+|++-.-.
T Consensus 177 ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~r 219 (354)
T COG4972 177 RAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYTR 219 (354)
T ss_pred HHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeEe
Confidence 4566677776665544434568999999999999999765443
No 86
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=61.88 E-value=7 Score=27.75 Aligned_cols=18 Identities=11% Similarity=-0.304 Sum_probs=15.9
Q ss_pred cceEeccCCceEEEEEeC
Q 046319 32 MKTWVSLFLISCVGVWKN 49 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~ 49 (135)
++|||+|+..+-+|+.+.
T Consensus 6 iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 6 ILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred EEEEEeCCCEEEEEEecC
Confidence 677999999999999864
No 87
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=61.74 E-value=13 Score=26.86 Aligned_cols=27 Identities=4% Similarity=0.039 Sum_probs=20.2
Q ss_pred cccceEeccCCceEEEEEe--CCeEEEEE
Q 046319 30 RVMKTWVSLFLISCVGVWK--NDRVQIIA 56 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~--~g~~~ii~ 56 (135)
+.|.+||.|+-|.+.++++ ++.+.++.
T Consensus 1 mii~sIDiGikNlA~~iie~~~~~i~~~~ 29 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFEGNKIRVID 29 (143)
T ss_pred CeEEEEecCCCceeEEEEEcCCCeEEEEE
Confidence 3567899999999999986 44455443
No 88
>PRK13317 pantothenate kinase; Provisional
Probab=60.22 E-value=12 Score=29.66 Aligned_cols=20 Identities=0% Similarity=-0.235 Sum_probs=16.2
Q ss_pred cceEeccCCceEEEEEeCCe
Q 046319 32 MKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~ 51 (135)
..|||.|+|.+.+++.+++.
T Consensus 4 ~iGIDiGstt~K~v~~~~~~ 23 (277)
T PRK13317 4 KIGIDAGGTLTKIVYLEEKK 23 (277)
T ss_pred eEEEEeCcccEEEEEEcCCC
Confidence 34799999999999986543
No 89
>PRK12408 glucokinase; Provisional
Probab=59.86 E-value=5.8 Score=32.03 Aligned_cols=22 Identities=9% Similarity=-0.301 Sum_probs=17.9
Q ss_pred cccccceEeccCCceEEEEEeC
Q 046319 28 RRRVMKTWVSLFLISCVGVWKN 49 (135)
Q Consensus 28 ~~~~i~gID~GTtns~vA~~~~ 49 (135)
|.+.+++||+|.||+..|+++.
T Consensus 14 ~~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 14 RPESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred ccccEEEEEcChhhhheeEEec
Confidence 4455677999999999999963
No 90
>PRK10854 exopolyphosphatase; Provisional
Probab=57.20 E-value=23 Score=30.44 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=36.6
Q ss_pred cccccceEeccCCceEEEEEe--CCeEEEEECCCCCeeeeEEEEEcC---CeeEecHHHHHHHHcCCCCceeeccccc
Q 046319 28 RRRVMKTWVSLFLISCVGVWK--NDRVQIIANDQGNRTTPSYVAFTD---TERLIGDAAKNQVATNPQNTVFDAKLLI 100 (135)
Q Consensus 28 ~~~~i~gID~GTtns~vA~~~--~g~~~ii~n~~g~~~~PS~V~~~~---~~~~vG~~A~~~~~~~p~~~i~~~Krll 100 (135)
|.+.++.||+||....+.+++ ++.+.++.+. + ..|-+.+ ..-.+..+|..++.. ++..|+.++
T Consensus 9 ~~~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~----k--~~vrLg~g~~~~g~Ls~e~~~r~~~----~L~~F~~~~ 76 (513)
T PRK10854 9 RPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRL----K--QRVHLADGLDSDNMLSEEAMERGLN----CLSLFAERL 76 (513)
T ss_pred CCCEEEEEEeccchheEEEEEecCCcEEEeeee----e--EEEECCCCcCCCCCcCHHHHHHHHH----HHHHHHHHH
Confidence 445678899999998887774 5667777543 1 2233322 112244566666543 455555555
No 91
>PRK13322 pantothenate kinase; Reviewed
Probab=55.69 E-value=10 Score=29.41 Aligned_cols=18 Identities=11% Similarity=-0.326 Sum_probs=15.7
Q ss_pred cceEeccCCceEEEEEeC
Q 046319 32 MKTWVSLFLISCVGVWKN 49 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~ 49 (135)
++-||.|+|+++.+++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 456899999999999985
No 92
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=55.29 E-value=12 Score=28.36 Aligned_cols=17 Identities=6% Similarity=-0.375 Sum_probs=14.4
Q ss_pred cceEeccCCceEEEEEe
Q 046319 32 MKTWVSLFLISCVGVWK 48 (135)
Q Consensus 32 i~gID~GTtns~vA~~~ 48 (135)
.+.||||.||..|+.++
T Consensus 65 ~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 65 FLALDLGGTNLRVALVE 81 (206)
T ss_dssp EEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcEEEEEEEE
Confidence 34589999999999984
No 93
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=55.26 E-value=9.9 Score=26.69 Aligned_cols=17 Identities=6% Similarity=-0.550 Sum_probs=14.5
Q ss_pred ceEeccCCceEEEEEeC
Q 046319 33 KTWVSLFLISCVGVWKN 49 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~ 49 (135)
+|||+|+..+-+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 36999999999998754
No 94
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=55.01 E-value=12 Score=23.06 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCccc
Q 046319 3 LQLQFFQEEGKQLLRLLLLRRGRKR 27 (135)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (135)
-.+.|.|++|.+.|..|=+---.++
T Consensus 10 ~~i~FLq~eH~~tL~~LH~EIe~Lq 34 (60)
T PF14916_consen 10 KSILFLQQEHAQTLKGLHAEIERLQ 34 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999988765544444
No 95
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=53.40 E-value=19 Score=25.86 Aligned_cols=28 Identities=7% Similarity=-0.144 Sum_probs=19.9
Q ss_pred cccccceEeccCCceEEEEEeCCeEEEE
Q 046319 28 RRRVMKTWVSLFLISCVGVWKNDRVQII 55 (135)
Q Consensus 28 ~~~~i~gID~GTtns~vA~~~~g~~~ii 55 (135)
++.+|.|||=|||.-.+++--+|.+-.+
T Consensus 30 ~~~lIVGiDPG~ttgiAildL~G~~l~l 57 (138)
T PF04312_consen 30 RRYLIVGIDPGTTTGIAILDLDGELLDL 57 (138)
T ss_pred CCCEEEEECCCceeEEEEEecCCcEEEE
Confidence 6788999999998665555457765444
No 96
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=53.38 E-value=12 Score=26.84 Aligned_cols=20 Identities=10% Similarity=-0.376 Sum_probs=16.8
Q ss_pred ccceEeccCCceEEEEEeCC
Q 046319 31 VMKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g 50 (135)
.++|+|+||-.+-||+.+..
T Consensus 3 ~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 3 RILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred eEEEEecCCceEEEEEecCC
Confidence 46679999999999998654
No 97
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=53.35 E-value=45 Score=26.58 Aligned_cols=15 Identities=0% Similarity=-0.491 Sum_probs=12.5
Q ss_pred eEeccCCceEEEEEe
Q 046319 34 TWVSLFLISCVGVWK 48 (135)
Q Consensus 34 gID~GTtns~vA~~~ 48 (135)
|||.|-.|+.++...
T Consensus 1 ~iDvGyg~~K~~~~~ 15 (320)
T TIGR03739 1 AVDVGYGNTKFVSQV 15 (320)
T ss_pred CccccCCceEEEecC
Confidence 489999999998753
No 98
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=52.62 E-value=9.2 Score=33.62 Aligned_cols=21 Identities=0% Similarity=-0.518 Sum_probs=17.5
Q ss_pred cccccceEeccCCceEEEEEe
Q 046319 28 RRRVMKTWVSLFLISCVGVWK 48 (135)
Q Consensus 28 ~~~~i~gID~GTtns~vA~~~ 48 (135)
.+++++|||+|.||+.+|+++
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALET 36 (638)
T ss_pred CCCCEEEEEcCchhheeeeec
Confidence 345677899999999999995
No 99
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=52.17 E-value=8.5 Score=33.16 Aligned_cols=25 Identities=8% Similarity=-0.059 Sum_probs=19.2
Q ss_pred ccccceEeccCCceEEEEEe-CCeEE
Q 046319 29 RRVMKTWVSLFLISCVGVWK-NDRVQ 53 (135)
Q Consensus 29 ~~~i~gID~GTtns~vA~~~-~g~~~ 53 (135)
..+|+.||-|||.|.+-+++ +|++.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iv 29 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIV 29 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCch
Confidence 35677899999999998884 55543
No 100
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=50.99 E-value=26 Score=28.13 Aligned_cols=28 Identities=7% Similarity=-0.099 Sum_probs=19.9
Q ss_pred ccccceEeccCCceEEEEEeCCeEEEEE
Q 046319 29 RRVMKTWVSLFLISCVGVWKNDRVQIIA 56 (135)
Q Consensus 29 ~~~i~gID~GTtns~vA~~~~g~~~ii~ 56 (135)
...++.+|+|.+.|.+.++.+|.+....
T Consensus 179 ~~~~~lvdiG~~~t~~~i~~~g~~~f~R 206 (340)
T PF11104_consen 179 AETVALVDIGASSTTVIIFQNGKPIFSR 206 (340)
T ss_dssp T-EEEEEEE-SS-EEEEEEETTEEEEEE
T ss_pred cceEEEEEecCCeEEEEEEECCEEEEEE
Confidence 3445668999999999999999876543
No 101
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=50.90 E-value=6.7 Score=33.56 Aligned_cols=14 Identities=0% Similarity=-0.311 Sum_probs=12.6
Q ss_pred EeccCCceEEEEEe
Q 046319 35 WVSLFLISCVGVWK 48 (135)
Q Consensus 35 ID~GTtns~vA~~~ 48 (135)
+|||+|+++++.++
T Consensus 1 ~DiGST~Tk~~a~~ 14 (463)
T TIGR01319 1 LDFGSTWTKAAAFD 14 (463)
T ss_pred CCccccceEEEEEe
Confidence 59999999998885
No 102
>PRK00292 glk glucokinase; Provisional
Probab=50.33 E-value=15 Score=29.15 Aligned_cols=17 Identities=0% Similarity=-0.474 Sum_probs=15.2
Q ss_pred cceEeccCCceEEEEEe
Q 046319 32 MKTWVSLFLISCVGVWK 48 (135)
Q Consensus 32 i~gID~GTtns~vA~~~ 48 (135)
+++||+|.|++.+++++
T Consensus 4 ~lgiDIGgT~i~~~l~~ 20 (316)
T PRK00292 4 ALVGDIGGTNARFALCD 20 (316)
T ss_pred EEEEEcCccceEEEEEe
Confidence 46689999999999996
No 103
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=46.91 E-value=28 Score=27.75 Aligned_cols=25 Identities=16% Similarity=-0.045 Sum_probs=18.2
Q ss_pred ccceEeccCCceEEEEEe--CCeEEEE
Q 046319 31 VMKTWVSLFLISCVGVWK--NDRVQII 55 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~--~g~~~ii 55 (135)
.+.|||+|++..+++... ++++.++
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~ 30 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLE 30 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEE
Confidence 456799999999988875 4445443
No 104
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=44.73 E-value=23 Score=28.84 Aligned_cols=39 Identities=5% Similarity=-0.292 Sum_probs=27.3
Q ss_pred HHHHHHhcCccc--cccccceEeccCCceEEEEEeCCeEEEE
Q 046319 16 LRLLLLRRGRKR--RRRVMKTWVSLFLISCVGVWKNDRVQII 55 (135)
Q Consensus 16 ~~~~~~~~~~~~--~~~~i~gID~GTtns~vA~~~~g~~~ii 55 (135)
.+.|++...+.. ..++|. +|.|.|.+-|+.+.+|++.+.
T Consensus 113 ~Sg~~a~A~~la~~~~~~I~-~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 113 AANWLATAQLIAKRIPECLF-VDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred HhhHHHHHHHHHhcCCCEEE-EEcCccceeeEEecCCEeeee
Confidence 345555433332 345555 799999999999999988765
No 105
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=43.86 E-value=31 Score=26.55 Aligned_cols=18 Identities=0% Similarity=-0.407 Sum_probs=15.0
Q ss_pred ceEeccCCceEEEEEeCC
Q 046319 33 KTWVSLFLISCVGVWKND 50 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g 50 (135)
+|||-|.|.|.+.+++.+
T Consensus 1 lGIDgGgTkt~~vl~d~~ 18 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDEN 18 (271)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred CEEeeChheeeeEEEeCC
Confidence 479999999999988643
No 106
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=42.91 E-value=51 Score=26.73 Aligned_cols=17 Identities=0% Similarity=-0.511 Sum_probs=13.9
Q ss_pred ccceEeccCCceEEEEE
Q 046319 31 VMKTWVSLFLISCVGVW 47 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~ 47 (135)
.+.+||+|..|+.++.-
T Consensus 3 ~v~~iDiG~g~tK~~~~ 19 (344)
T PRK13917 3 YVMALDFGNGFVKGKIN 19 (344)
T ss_pred eEEEEeccCCeEEEEec
Confidence 35679999999999764
No 107
>PRK13327 pantothenate kinase; Reviewed
Probab=42.63 E-value=24 Score=27.45 Aligned_cols=35 Identities=9% Similarity=-0.088 Sum_probs=20.4
Q ss_pred HHHHHHhcCccccccccceEeccCCceEEEEEeCCe
Q 046319 16 LRLLLLRRGRKRRRRVMKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~gID~GTtns~vA~~~~g~ 51 (135)
-|+|++..+-...+..+ .||+||.-+.=++-.+|.
T Consensus 99 ~DR~~a~vaA~~~~~~l-VVD~GTA~TiD~v~~~g~ 133 (242)
T PRK13327 99 VDRFLALLGARGDAPVL-VVGVGTALTIDLLGADGL 133 (242)
T ss_pred HHHHHHHHHhhcCCCEE-EEEcCCceEEEEECCCCe
Confidence 35666542222234444 489999988876655553
No 108
>PRK13320 pantothenate kinase; Reviewed
Probab=41.18 E-value=21 Score=27.67 Aligned_cols=19 Identities=5% Similarity=-0.319 Sum_probs=13.8
Q ss_pred ceEeccCCceEEEEEeCCe
Q 046319 33 KTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~ 51 (135)
..||+||..+.=.+-.+|.
T Consensus 117 lVID~GTA~Tid~v~~~g~ 135 (244)
T PRK13320 117 LAIDAGTAITYDVLDSEGV 135 (244)
T ss_pred EEEEcCCceEEEEEcCCCc
Confidence 4489999988876655553
No 109
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=40.92 E-value=35 Score=28.81 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=22.1
Q ss_pred eEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHH
Q 046319 34 TWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 84 (135)
Q Consensus 34 gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~ 84 (135)
.||+|||..+++.++-..-+++ ...+..+..+.+|.+..++
T Consensus 5 AvDiGTTti~~~L~dl~~G~~l----------~~~s~~NpQ~~~GaDViSR 45 (412)
T PF14574_consen 5 AVDIGTTTIAAYLVDLETGEVL----------ATASFLNPQRAYGADVISR 45 (412)
T ss_dssp EEEE-SSEEEEEEEETTT--EE----------EEEEEE-GGGGT-SSHHHH
T ss_pred EEEcchhheeeEEEECCCCCEE----------EeecccCCCCCcchHHHHH
Confidence 4899999999999863221222 2233334455566666655
No 110
>PLN02362 hexokinase
Probab=40.40 E-value=15 Score=31.84 Aligned_cols=56 Identities=14% Similarity=-0.040 Sum_probs=30.4
Q ss_pred cccccceEeccCCceEEEEEe-CC-eEEEEECCCCCeeeeEEEEEcCCeeEecHHHHHH
Q 046319 28 RRRVMKTWVSLFLISCVGVWK-ND-RVQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 84 (135)
Q Consensus 28 ~~~~i~gID~GTtns~vA~~~-~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~ 84 (135)
++..+ .||||.||..|+.++ .| ....+..+..+..+|--+--..++.++..-|...
T Consensus 94 ~G~fL-AlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i 151 (509)
T PLN02362 94 IGTYY-ALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSL 151 (509)
T ss_pred ceeEE-EEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHH
Confidence 33444 489999999999985 33 2222222222345555443333455666555543
No 111
>PRK13322 pantothenate kinase; Reviewed
Probab=40.14 E-value=23 Score=27.53 Aligned_cols=19 Identities=5% Similarity=-0.331 Sum_probs=13.6
Q ss_pred cceEeccCCceEEEEEeCC
Q 046319 32 MKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g 50 (135)
+..||+||.-+.=.+-.+|
T Consensus 118 ~lViD~GTA~TiD~v~~~g 136 (246)
T PRK13322 118 CLVIDCGTAVTIDLVDADG 136 (246)
T ss_pred EEEEEcCCeeEEEEEcCCC
Confidence 3458999998877665555
No 112
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=39.46 E-value=16 Score=29.37 Aligned_cols=21 Identities=0% Similarity=-0.326 Sum_probs=16.6
Q ss_pred cccceEeccCCceEEEEEeCCe
Q 046319 30 RVMKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~~g~ 51 (135)
..++|||.|..|+.+|. .+|.
T Consensus 3 ~kilGiDIGGAntk~a~-~DG~ 23 (330)
T COG1548 3 MKILGIDIGGANTKIAS-SDGD 23 (330)
T ss_pred ceEEEeeccCccchhhh-ccCC
Confidence 34778999999999998 4443
No 113
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=39.03 E-value=43 Score=28.66 Aligned_cols=33 Identities=9% Similarity=-0.167 Sum_probs=24.0
Q ss_pred cccccccceEeccCCceEEEEEe--CCeEEEEECC
Q 046319 26 KRRRRVMKTWVSLFLISCVGVWK--NDRVQIIAND 58 (135)
Q Consensus 26 ~~~~~~i~gID~GTtns~vA~~~--~g~~~ii~n~ 58 (135)
+++...++.||+||....+-+++ ++.+.++.+.
T Consensus 2 ~~~~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~ 36 (496)
T PRK11031 2 LSSSSLYAAIDLGSNSFHMLVVREVAGSIQTLARI 36 (496)
T ss_pred CCCCCEEEEEEccccceeEEEEEecCCceEEeecc
Confidence 44566788899999988887774 5666666543
No 114
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=38.04 E-value=28 Score=26.90 Aligned_cols=20 Identities=10% Similarity=-0.197 Sum_probs=13.9
Q ss_pred cccceEeccCCceEEEEEeCC
Q 046319 30 RVMKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~~g 50 (135)
.++. ||+||.-+.=.+-.+|
T Consensus 117 ~~lV-iD~GTA~Tid~v~~~g 136 (243)
T TIGR00671 117 NVVV-VDAGTALTIDLVDQEG 136 (243)
T ss_pred CEEE-EEcCCceEEEEEcCCC
Confidence 4444 8999998887665555
No 115
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=37.95 E-value=26 Score=26.83 Aligned_cols=20 Identities=15% Similarity=-0.076 Sum_probs=16.4
Q ss_pred cceEeccCCceEEEEEe-CCe
Q 046319 32 MKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~-~g~ 51 (135)
++|||+|.|+..+++++ +++
T Consensus 2 ~lgidiggt~i~~~l~d~~g~ 22 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQ 22 (256)
T ss_pred EEEEEECCCcEEEEEECCCCC
Confidence 46799999999999985 444
No 116
>PLN02914 hexokinase
Probab=37.87 E-value=14 Score=31.95 Aligned_cols=51 Identities=16% Similarity=0.016 Sum_probs=28.8
Q ss_pred ceEeccCCceEEEEEe-CCe-EEEEECCCCCeeeeEEEEEcCCeeEecHHHHH
Q 046319 33 KTWVSLFLISCVGVWK-NDR-VQIIANDQGNRTTPSYVAFTDTERLIGDAAKN 83 (135)
Q Consensus 33 ~gID~GTtns~vA~~~-~g~-~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~ 83 (135)
+.||||.||.-|+.++ +|. -.++.....+..+|--+-...++.++..-|..
T Consensus 98 LAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~ 150 (490)
T PLN02914 98 YALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASG 150 (490)
T ss_pred EEEecCCceEEEEEEEecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHH
Confidence 3489999999999985 331 22233233344455544433345566665543
No 117
>PRK13329 pantothenate kinase; Reviewed
Probab=37.56 E-value=24 Score=27.51 Aligned_cols=18 Identities=6% Similarity=-0.206 Sum_probs=15.6
Q ss_pred ccceEeccCCceEEEEEe
Q 046319 31 VMKTWVSLFLISCVGVWK 48 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~ 48 (135)
+++.||.|+|.++.|+.+
T Consensus 2 m~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 2 TFLAIDVGNTRLKWGLYD 19 (249)
T ss_pred CEEEEEcCcchheeeEec
Confidence 355699999999999988
No 118
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=36.99 E-value=27 Score=30.09 Aligned_cols=16 Identities=0% Similarity=-0.444 Sum_probs=12.7
Q ss_pred ceEeccCCceEEEEEe
Q 046319 33 KTWVSLFLISCVGVWK 48 (135)
Q Consensus 33 ~gID~GTtns~vA~~~ 48 (135)
.|||+|||.|.+-+.+
T Consensus 6 VGIDIGTSTTQlvfSr 21 (473)
T PF06277_consen 6 VGIDIGTSTTQLVFSR 21 (473)
T ss_pred EEEeecCCceeEEEEE
Confidence 4799999999985543
No 119
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=36.97 E-value=35 Score=30.11 Aligned_cols=25 Identities=8% Similarity=-0.286 Sum_probs=20.5
Q ss_pred ccccccceEeccCCceEEEEEeCCe
Q 046319 27 RRRRVMKTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 27 ~~~~~i~gID~GTtns~vA~~~~g~ 51 (135)
..+++++-||.|+|.++.|+.+++.
T Consensus 335 ~~~~~~LliD~GNTriKwa~~~~~~ 359 (592)
T PRK13325 335 RDSERFLLLDGGNSRLKWAWVENGT 359 (592)
T ss_pred CCCceEEEEEcCcCceeEEEEcCCc
Confidence 3557777899999999999987664
No 120
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=35.52 E-value=28 Score=25.48 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=17.9
Q ss_pred cceEeccCCceEEEEEe--CCeEEEE
Q 046319 32 MKTWVSLFLISCVGVWK--NDRVQII 55 (135)
Q Consensus 32 i~gID~GTtns~vA~~~--~g~~~ii 55 (135)
|+|||=|++.+-.++.+ +++...+
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~~~~~v 26 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGRQLSYL 26 (156)
T ss_pred CEeECcccccccEEEEEecCCeEEEE
Confidence 56899999999999985 3444433
No 121
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=35.46 E-value=66 Score=22.03 Aligned_cols=19 Identities=11% Similarity=-0.314 Sum_probs=15.5
Q ss_pred ceEeccCCceEEEEEeCCe
Q 046319 33 KTWVSLFLISCVGVWKNDR 51 (135)
Q Consensus 33 ~gID~GTtns~vA~~~~g~ 51 (135)
.|||+|-....++++..+.
T Consensus 2 vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 2 VGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred EEEEcccCeEEEEEEcCCC
Confidence 4699999999999886544
No 122
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=35.38 E-value=30 Score=29.79 Aligned_cols=15 Identities=7% Similarity=-0.409 Sum_probs=0.0
Q ss_pred eEeccCCceEEEEEe
Q 046319 34 TWVSLFLISCVGVWK 48 (135)
Q Consensus 34 gID~GTtns~vA~~~ 48 (135)
|||.|||.|.+-+.+
T Consensus 10 GIDIGTsTTqlvfSr 24 (475)
T PRK10719 10 GIDIGTTTTQVIFSR 24 (475)
T ss_pred EEeccCceEEEEEEE
No 123
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=35.36 E-value=18 Score=22.33 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=22.6
Q ss_pred eecccccCCCCCChhHHHHHHHHcCCCCCc-----EEEeeCCCcc
Q 046319 94 FDAKLLIRRRFSDPSTKEIAEAYLGQALKN-----AVVTVPAYFN 133 (135)
Q Consensus 94 ~~~KrllG~~~~d~~lk~~Ae~~~g~~v~~-----vVItVPa~F~ 133 (135)
..+++++|..+....+.+.-+ .+|..+.. ..+++|.|=.
T Consensus 9 ~~i~~~lG~~i~~~~i~~~L~-~lg~~~~~~~~~~~~v~vP~~R~ 52 (70)
T PF03484_consen 9 DKINKLLGIDISPEEIIKILK-RLGFKVEKIDGDTLEVTVPSYRF 52 (70)
T ss_dssp HHHHHHHTS---HHHHHHHHH-HTT-EEEE-CTTEEEEEEETTST
T ss_pred HHHHHHhCCCCCHHHHHHHHH-HCCCEEEECCCCEEEEEcCCCcC
Confidence 457889998777655444443 35655444 5999998743
No 124
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=34.51 E-value=55 Score=24.46 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=20.9
Q ss_pred ccceEeccCCc-eEEEEEeCCeEEEEEC
Q 046319 31 VMKTWVSLFLI-SCVGVWKNDRVQIIAN 57 (135)
Q Consensus 31 ~i~gID~GTtn-s~vA~~~~g~~~ii~n 57 (135)
+..|||+|--. +++|++.+|+.+++..
T Consensus 2 my~GIDla~k~~tavavl~~~~~~~i~~ 29 (178)
T COG2410 2 MYAGIDLAVKRSTAVAVLIEGRIEIISA 29 (178)
T ss_pred cccccccccCCCceEEEEECCEEEEEEc
Confidence 34579998544 4899999999999873
No 125
>PTZ00288 glucokinase 1; Provisional
Probab=34.34 E-value=34 Score=28.78 Aligned_cols=20 Identities=10% Similarity=-0.140 Sum_probs=17.1
Q ss_pred cccceEeccCCceEEEEEeC
Q 046319 30 RVMKTWVSLFLISCVGVWKN 49 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~~ 49 (135)
.+++++|.|.||+.+|..+.
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CeEEEEEecCCceEEEEEec
Confidence 55777899999999999964
No 126
>PRK03011 butyrate kinase; Provisional
Probab=33.95 E-value=42 Score=27.65 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=18.6
Q ss_pred cceEeccCCceEEEEEeCCeEE
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQ 53 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ 53 (135)
|+.|.-|+|.|.+|++++.+.-
T Consensus 4 il~inpgststk~a~~~~~~~~ 25 (358)
T PRK03011 4 ILVINPGSTSTKIAVFEDEKPI 25 (358)
T ss_pred EEEEcCCCchheEEEEcCCcee
Confidence 6779999999999999876543
No 127
>PLN02596 hexokinase-like
Probab=33.31 E-value=19 Score=31.11 Aligned_cols=55 Identities=11% Similarity=-0.118 Sum_probs=29.0
Q ss_pred cccccceEeccCCceEEEEEe-CCe-EEEEECCCCCeeeeEEEEEcCCeeEecHHHHH
Q 046319 28 RRRVMKTWVSLFLISCVGVWK-NDR-VQIIANDQGNRTTPSYVAFTDTERLIGDAAKN 83 (135)
Q Consensus 28 ~~~~i~gID~GTtns~vA~~~-~g~-~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~ 83 (135)
++..+ .||||.||..|+.++ .|. ..+......+..+|--+--..++.++..-|..
T Consensus 95 ~G~yL-AlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~ 151 (490)
T PLN02596 95 KGLYY-GLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALE 151 (490)
T ss_pred ceEEE-EEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHH
Confidence 44554 489999999999985 332 11222122223344433322345566665553
No 128
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=33.07 E-value=41 Score=29.53 Aligned_cols=60 Identities=18% Similarity=0.077 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCccccccccceEeccCCceEEEEEeCCeEEEEECCCCCeeeeEEEEEcCCeeEecHHHH
Q 046319 14 QLLRLLLLRRGRKRRRRVMKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPSYVAFTDTERLIGDAAK 82 (135)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~ 82 (135)
.+|- ++..+++..++++++.+|+|| |.-+++-.++++-.-.- ||--+|.+-+...|..|.
T Consensus 314 DAla-~il~tg~~~sdevslvtD~GT-NaEivlg~~~ri~t~Sa-------aaGPAfEGqeIs~G~~As 373 (614)
T COG3894 314 DALA-MILSTGIHDSDEVSLVTDYGT-NAEIVLGNRDRIVTASA-------AAGPAFEGQEISHGMRAS 373 (614)
T ss_pred HHHH-HHHhccCccccceEEEEeecc-cceEEeccCCEEEEecC-------CCCcccccccccCccccC
Confidence 3443 345579999999988899996 66776654444332221 444455555566666654
No 129
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=31.84 E-value=40 Score=26.76 Aligned_cols=16 Identities=0% Similarity=-0.454 Sum_probs=14.0
Q ss_pred eEeccCCceEEEEEeC
Q 046319 34 TWVSLFLISCVGVWKN 49 (135)
Q Consensus 34 gID~GTtns~vA~~~~ 49 (135)
.+|+|.||+.+++++.
T Consensus 2 ~~DIGGT~i~~glvd~ 17 (316)
T TIGR00749 2 VGDIGGTNARLALCEI 17 (316)
T ss_pred eEecCcceeeEEEEec
Confidence 4799999999999964
No 130
>PLN02405 hexokinase
Probab=31.09 E-value=20 Score=30.94 Aligned_cols=56 Identities=7% Similarity=-0.101 Sum_probs=31.8
Q ss_pred cccccceEeccCCceEEEEEe-CCe-EEEEECCCCCeeeeEEEEEcCCeeEecHHHHHH
Q 046319 28 RRRVMKTWVSLFLISCVGVWK-NDR-VQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 84 (135)
Q Consensus 28 ~~~~i~gID~GTtns~vA~~~-~g~-~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~ 84 (135)
++..+ .||||.||.-|+.++ +|+ -..+..+..+..+|.-+--..++.++..-|...
T Consensus 94 ~G~fl-AlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i 151 (497)
T PLN02405 94 KGLFY-ALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAAL 151 (497)
T ss_pred ceeEE-EEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHH
Confidence 33344 489999999999884 331 112222223455666555444556666666544
No 131
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=30.95 E-value=40 Score=26.36 Aligned_cols=20 Identities=10% Similarity=-0.145 Sum_probs=16.4
Q ss_pred cceEeccCCceEEEEEe-CCe
Q 046319 32 MKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~-~g~ 51 (135)
++|||+|.|+..+++++ +|.
T Consensus 2 ~lgidig~t~i~~~l~d~~g~ 22 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE 22 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc
Confidence 46799999999999986 443
No 132
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.69 E-value=87 Score=26.46 Aligned_cols=46 Identities=20% Similarity=-0.013 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHh----cCc----------cccccccceEeccCCceEEEEEeCC
Q 046319 4 QLQFFQEEGKQLLRLLLLR----RGR----------KRRRRVMKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~----~~~----------~~~~~~i~gID~GTtns~vA~~~~g 50 (135)
||+-+|++.++--=|.|++ +|+ +.++.++. |-+||.+...++..+|
T Consensus 237 QL~slq~q~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~-~~~g~~~ll~~~teeg 296 (407)
T KOG3784|consen 237 QLKSLQEEESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAV-ISVGNHELLLACTEEG 296 (407)
T ss_pred HHHHHHHhhhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEE-EEEcchhheeeeccCC
Confidence 8999999988766666666 444 33566665 6899999998887766
No 133
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=30.57 E-value=57 Score=25.83 Aligned_cols=26 Identities=12% Similarity=-0.031 Sum_probs=17.7
Q ss_pred ccccceEeccCCceEEEEEeCCeEEEE
Q 046319 29 RRVMKTWVSLFLISCVGVWKNDRVQII 55 (135)
Q Consensus 29 ~~~i~gID~GTtns~vA~~~~g~~~ii 55 (135)
.++|. +|.|.|.+=|+.+.+|.+.+-
T Consensus 77 ~~~i~-vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 77 ENAIV-VDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp SSEEE-EEE-SS-EEEEEEETTEE---
T ss_pred CCEEE-EeCCCCEEEEEEEECCeeecc
Confidence 34555 799999999999999988644
No 134
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=30.40 E-value=26 Score=28.11 Aligned_cols=16 Identities=0% Similarity=-0.583 Sum_probs=12.8
Q ss_pred eEeccCCceEEEEEeC
Q 046319 34 TWVSLFLISCVGVWKN 49 (135)
Q Consensus 34 gID~GTtns~vA~~~~ 49 (135)
|||+|+....++..+.
T Consensus 1 GiDiG~~siK~v~l~~ 16 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSK 16 (340)
T ss_dssp EEEE-SSEEEEEEEET
T ss_pred CeecCCCeEEEEEEEE
Confidence 6999999999987753
No 135
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=29.88 E-value=76 Score=25.33 Aligned_cols=21 Identities=10% Similarity=-0.364 Sum_probs=16.3
Q ss_pred ceEeccCCceEEEEE-eCCeEE
Q 046319 33 KTWVSLFLISCVGVW-KNDRVQ 53 (135)
Q Consensus 33 ~gID~GTtns~vA~~-~~g~~~ 53 (135)
.|||.|.|-+.+++. .+++..
T Consensus 3 iGiDiGgT~~Kiv~~~~~~~~~ 24 (279)
T TIGR00555 3 IGIDIGGTLIKVVYEEPKGRRK 24 (279)
T ss_pred EEEEeCcceEEEEEEcCCCcEE
Confidence 469999999999988 455543
No 136
>PRK13333 pantothenate kinase; Reviewed
Probab=29.05 E-value=69 Score=24.43 Aligned_cols=30 Identities=7% Similarity=-0.192 Sum_probs=18.3
Q ss_pred HHHHHHhcCccccccccceEeccCCceEEEEEeCC
Q 046319 16 LRLLLLRRGRKRRRRVMKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~gID~GTtns~vA~~~~g 50 (135)
.|+|++..+ .+.++. ||+||.-+.=++ .+|
T Consensus 74 vDR~~a~~a---a~~~lV-IDaGTAiTiDvv-~~g 103 (206)
T PRK13333 74 IDRIAACYA---IEDGVV-VDAGSAITVDIM-SNG 103 (206)
T ss_pred HHHHHHhcc---CCCeEE-EEcCCceEEEEE-cCC
Confidence 356666533 234444 799998887655 554
No 137
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=28.81 E-value=31 Score=28.70 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=17.9
Q ss_pred HHHHHHhcCccccccccceEeccCCceEEE
Q 046319 16 LRLLLLRRGRKRRRRVMKTWVSLFLISCVG 45 (135)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~gID~GTtns~vA 45 (135)
.+-||.+. =...+..+-|||.||+-||+.
T Consensus 89 I~DLLss~-q~~k~~i~~GiDIgtgasci~ 117 (419)
T KOG2912|consen 89 IEDLLSSQ-QSDKSTIRRGIDIGTGASCIY 117 (419)
T ss_pred HHHHhhcc-cCCCcceeeeeeccCchhhhH
Confidence 34455553 122334455899999999974
No 138
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=28.49 E-value=59 Score=23.87 Aligned_cols=23 Identities=9% Similarity=-0.214 Sum_probs=16.9
Q ss_pred eEeccCCceEEEEEeCC--eEEEEE
Q 046319 34 TWVSLFLISCVGVWKND--RVQIIA 56 (135)
Q Consensus 34 gID~GTtns~vA~~~~g--~~~ii~ 56 (135)
|||.|.||+=+.+.+++ .+...+
T Consensus 3 gIDvGGT~TD~v~~d~~~~~~~~~K 27 (176)
T PF05378_consen 3 GIDVGGTFTDAVLLDEDTGVVATAK 27 (176)
T ss_pred eEecCCCcEEEEEEeCCCCEEEEEE
Confidence 69999999998887654 444433
No 139
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=27.86 E-value=1.1e+02 Score=24.23 Aligned_cols=26 Identities=8% Similarity=-0.201 Sum_probs=20.4
Q ss_pred ccceEeccCCceEEEEEeCCeEEEEE
Q 046319 31 VMKTWVSLFLISCVGVWKNDRVQIIA 56 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g~~~ii~ 56 (135)
-+..||.|+..+.+|.+.++++.=|-
T Consensus 168 ~~~~vniGN~HTlaa~v~~~rI~Gvf 193 (254)
T PF08735_consen 168 GIIVVNIGNGHTLAALVKDGRIYGVF 193 (254)
T ss_pred CeEEEEeCCccEEEEEEeCCEEEEEE
Confidence 34458999999999999988876543
No 140
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=27.77 E-value=31 Score=31.55 Aligned_cols=41 Identities=10% Similarity=-0.063 Sum_probs=25.2
Q ss_pred ccceEeccCCceEEEEEeCCe----EEEEECCCCCeeeeEEEEEcC
Q 046319 31 VMKTWVSLFLISCVGVWKNDR----VQIIANDQGNRTTPSYVAFTD 72 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g~----~~ii~n~~g~~~~PS~V~~~~ 72 (135)
.++|+|+||+..--|+++... +..+. ..|-+..+.+--+.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d~~~~~~~~~~-~~gvr~~~~~~~~k~ 46 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDDYKVPAAKRLI-DGGVRNFTGAELPKT 46 (805)
T ss_pred ceeEEeecccceeEEEEecccccccccccc-cCCeEeCcccccCCC
Confidence 467899999999999996432 22222 344455555444444
No 141
>PF12565 DUF3747: Protein of unknown function (DUF3747); InterPro: IPR022222 This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.
Probab=27.53 E-value=1.5e+02 Score=22.35 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=37.5
Q ss_pred HHHHHHH--HHHHHHHhcCccc--------cc--cccceEeccCCceEEEEEeCCeEEEEECCCCCeeeeE
Q 046319 8 FQEEGKQ--LLRLLLLRRGRKR--------RR--RVMKTWVSLFLISCVGVWKNDRVQIIANDQGNRTTPS 66 (135)
Q Consensus 8 ~~~~~~~--~~~~~~~~~~~~~--------~~--~~i~gID~GTtns~vA~~~~g~~~ii~n~~g~~~~PS 66 (135)
|.|.+-. +.+-+|.+|-|.+ ++ --|+|-|+|+.|.---+-++|....+..+..++.-|.
T Consensus 66 W~e~gs~P~~VdPlL~nFDFtGiC~R~tDSNGYSlR~~G~Dlg~~YrLrlv~~~~el~L~a~~~~~~~~p~ 136 (181)
T PF12565_consen 66 WSESGSNPVLVDPLLLNFDFTGICGRYTDSNGYSLRIGGQDLGLRYRLRLVQRNGELVLVATPRRDPSAPE 136 (181)
T ss_pred ccccCCCCeEecccccccccccccccccCCCCcEEEECCeecCceEEEEEEEECCEEEEEecCCCCCCcce
Confidence 3344444 5566777877754 22 2277899999999876667888888775543333333
No 142
>PF03263 Cucumo_2B: Cucumovirus protein 2B; InterPro: IPR004946 This family of cucumovirus proteins may be long-distance movement proteins. ; PDB: 2ZI0_B 3CZ3_C.
Probab=27.47 E-value=57 Score=22.15 Aligned_cols=16 Identities=38% Similarity=0.347 Sum_probs=12.4
Q ss_pred CchhhhHHHHHHHHHH
Q 046319 1 MELQLQFFQEEGKQLL 16 (135)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (135)
||+||+-.+|+.++.=
T Consensus 7 v~lkLarm~Ekkk~rR 22 (103)
T PF03263_consen 7 VELKLARMVEKKKQRR 22 (103)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5799999999887654
No 143
>PF01385 OrfB_IS605: Probable transposase; InterPro: IPR001959 This entry represents a conserved region of a probable transposase family, which is found in a number of uncharacterised bacterial proteins. A novel insertion sequence (IS)-like element of the Bacillus PS3 (Thermophilic bacterium PS-3) that promotes expression of the alanine carrier protein-encoding gene belongs to this entry, including IS891 [], IS1136 [], and IS1341 []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.43 E-value=29 Score=25.39 Aligned_cols=22 Identities=0% Similarity=-0.435 Sum_probs=15.3
Q ss_pred ccceEeccCCceEEEEEeCCeE
Q 046319 31 VMKTWVSLFLISCVGVWKNDRV 52 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g~~ 52 (135)
-+.|||+|..+..++...+|..
T Consensus 125 ~~vgVDlGi~~~a~~~~~~~~~ 146 (227)
T PF01385_consen 125 KVVGVDLGIKNLATVSSGDGTR 146 (227)
T ss_pred eeeeeccccceeeccccccccc
Confidence 3556899999988766555433
No 144
>PRK09557 fructokinase; Reviewed
Probab=27.05 E-value=50 Score=25.78 Aligned_cols=20 Identities=5% Similarity=-0.504 Sum_probs=16.2
Q ss_pred cceEeccCCceEEEEEe-CCe
Q 046319 32 MKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 32 i~gID~GTtns~vA~~~-~g~ 51 (135)
.+|||+|.|++.+++++ +|.
T Consensus 2 ~lgidig~t~~~~~l~d~~g~ 22 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE 22 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC
Confidence 45799999999999986 443
No 145
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=26.86 E-value=1.9e+02 Score=22.85 Aligned_cols=24 Identities=8% Similarity=-0.130 Sum_probs=19.8
Q ss_pred cceEeccCCceEEEEEeCCeEEEE
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQII 55 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii 55 (135)
...||+|...|.++++.+|.+...
T Consensus 190 ~~lvdiG~~~t~l~i~~~g~~~~~ 213 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHPGRMLFT 213 (348)
T ss_pred EEEEEECCCcEEEEEEECCeEEEE
Confidence 345899999999999999976654
No 146
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=26.74 E-value=72 Score=25.47 Aligned_cols=20 Identities=0% Similarity=-0.065 Sum_probs=14.5
Q ss_pred eEeccCCceEEEEEeCCeEE
Q 046319 34 TWVSLFLISCVGVWKNDRVQ 53 (135)
Q Consensus 34 gID~GTtns~vA~~~~g~~~ 53 (135)
.||-|.||..+|.+.+|...
T Consensus 4 ~iDdG~~~~K~~~~~~~~~~ 23 (318)
T PF06406_consen 4 AIDDGSTNVKLAWYEDGKIK 23 (318)
T ss_dssp EEEE-SSEEEEEEE-SS-EE
T ss_pred EEecCCCceeEEEecCCeEE
Confidence 48999999999999888543
No 147
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.76 E-value=1e+02 Score=24.98 Aligned_cols=23 Identities=9% Similarity=-0.169 Sum_probs=19.6
Q ss_pred eEeccCCceEEEEEeCCeEEEEE
Q 046319 34 TWVSLFLISCVGVWKNDRVQIIA 56 (135)
Q Consensus 34 gID~GTtns~vA~~~~g~~~ii~ 56 (135)
-+|+||..+..|.+..+++.-+.
T Consensus 231 vVd~GngHttaalvdedRI~gv~ 253 (342)
T COG4012 231 VVDYGNGHTTAALVDEDRIVGVY 253 (342)
T ss_pred EEEccCCceEEEEecCCeEEEEe
Confidence 47999999999999888877665
No 148
>PF07262 DUF1436: Protein of unknown function (DUF1436); InterPro: IPR009888 This family consists of several hypothetical bacterial proteins of around 160 residues in length. The function of this family is unknown.; PDB: 2GKP_A.
Probab=24.57 E-value=1.3e+02 Score=22.06 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCccccccccceEeccCCceEEEEEeCCeEEEEEC
Q 046319 9 QEEGKQLLRLLLLRRGRKRRRRVMKTWVSLFLISCVGVWKNDRVQIIAN 57 (135)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~gID~GTtns~vA~~~~g~~~ii~n 57 (135)
++.-+..-..++..+||++++.+... --+|.|. ..++.+.|-|.
T Consensus 74 ~~~~ke~~~~lm~~yGYKtkkalfK~----m~~csI~-~~n~~I~I~Pt 117 (158)
T PF07262_consen 74 KEFYKEWEKKLMEKYGYKTKKALFKN----MMSCSIS-CINGKITISPT 117 (158)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHTT-----EEEEEE-EETTEEEEE-E
T ss_pred hHHHHHHHHHHHHHcCCccHHHHHhc----CcEEEEE-EECCEEEEEec
Confidence 44556677788889999998877552 2233443 37888888774
No 149
>PTZ00107 hexokinase; Provisional
Probab=24.06 E-value=49 Score=28.35 Aligned_cols=16 Identities=0% Similarity=-0.732 Sum_probs=14.0
Q ss_pred ceEeccCCceEEEEEe
Q 046319 33 KTWVSLFLISCVGVWK 48 (135)
Q Consensus 33 ~gID~GTtns~vA~~~ 48 (135)
+.||||.||..|+.++
T Consensus 77 LAlDlGGTN~RV~~V~ 92 (464)
T PTZ00107 77 YAIDFGGTNFRAVRVS 92 (464)
T ss_pred EEEecCCceEEEEEEE
Confidence 4589999999999985
No 150
>PRK13328 pantothenate kinase; Reviewed
Probab=22.99 E-value=73 Score=24.87 Aligned_cols=20 Identities=0% Similarity=-0.454 Sum_probs=16.3
Q ss_pred ccceEeccCCceEEEEEeCC
Q 046319 31 VMKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 31 ~i~gID~GTtns~vA~~~~g 50 (135)
+++-||.|+|.++.|+.+.+
T Consensus 2 M~LliDiGNTriKwa~~~~~ 21 (255)
T PRK13328 2 MILLIDAGNSRIKWAWADAG 21 (255)
T ss_pred cEEEEEeCccceeEEEEcCC
Confidence 34568999999999998754
No 151
>PRK09698 D-allose kinase; Provisional
Probab=22.89 E-value=71 Score=24.85 Aligned_cols=22 Identities=5% Similarity=-0.328 Sum_probs=17.3
Q ss_pred cccceEeccCCceEEEEEe-CCe
Q 046319 30 RVMKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~-~g~ 51 (135)
..++|||+|.|++.+++++ +|.
T Consensus 4 ~~~lgidig~t~i~~~l~d~~g~ 26 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAEGE 26 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCCCC
Confidence 3456799999999999986 454
No 152
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=22.82 E-value=19 Score=26.14 Aligned_cols=28 Identities=4% Similarity=-0.140 Sum_probs=19.3
Q ss_pred cceEeccCCceEEEEEe--CCeEEEEECCC
Q 046319 32 MKTWVSLFLISCVGVWK--NDRVQIIANDQ 59 (135)
Q Consensus 32 i~gID~GTtns~vA~~~--~g~~~ii~n~~ 59 (135)
|+.||||++++-+...+ +..+.++++..
T Consensus 1 i~i~d~g~~~~~~~~l~~~G~~~~~~~~~~ 30 (178)
T cd01744 1 VVVIDFGVKHNILRELLKRGCEVTVVPYNT 30 (178)
T ss_pred CEEEecCcHHHHHHHHHHCCCeEEEEECCC
Confidence 45689999997665443 34677777654
No 153
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=21.95 E-value=73 Score=25.75 Aligned_cols=15 Identities=7% Similarity=-0.299 Sum_probs=13.3
Q ss_pred eccCCceEEEEEeCC
Q 046319 36 VSLFLISCVGVWKND 50 (135)
Q Consensus 36 D~GTtns~vA~~~~g 50 (135)
|.|.||+-+|++..+
T Consensus 4 DIGGTn~Rlal~~~~ 18 (316)
T PF02685_consen 4 DIGGTNTRLALAEPD 18 (316)
T ss_dssp EEETTEEEEEEEECT
T ss_pred EeCcccEEEEEEEcC
Confidence 999999999999643
No 154
>PRK10557 hypothetical protein; Provisional
Probab=21.48 E-value=3e+02 Score=20.50 Aligned_cols=40 Identities=20% Similarity=-0.016 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHH---HHhcCccccccccceEeccC----CceEEEEE
Q 046319 8 FQEEGKQLLRLL---LLRRGRKRRRRVMKTWVSLF----LISCVGVW 47 (135)
Q Consensus 8 ~~~~~~~~~~~~---~~~~~~~~~~~~i~gID~GT----tns~vA~~ 47 (135)
.|++.++++..+ |-+.||.....-=.++.++. +++|+.+.
T Consensus 48 l~~~~~~~l~~l~~dirrAGy~~~~~~g~~~~i~~~~~~~~sCi~~~ 94 (192)
T PRK10557 48 LEDEIWQRVFTVEKDLRRAGYCHGSCQGEGLEIANPGEAQGSCLIVA 94 (192)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCceEecccccCCCCeEEEE
Confidence 456666766655 66799975432112245555 88887664
No 155
>PF14239 RRXRR: RRXRR protein
Probab=21.05 E-value=1.1e+02 Score=22.91 Aligned_cols=21 Identities=5% Similarity=-0.179 Sum_probs=17.5
Q ss_pred cccceEeccCCceEEEEEeCC
Q 046319 30 RVMKTWVSLFLISCVGVWKND 50 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~~g 50 (135)
.+.+|||-|+.++-+|+..+.
T Consensus 51 pi~lgiDpGsk~tGiav~~~~ 71 (176)
T PF14239_consen 51 PIRLGIDPGSKTTGIAVVSEK 71 (176)
T ss_pred CEEEEECCCCCeEEEEEEeCC
Confidence 355679999999999997766
No 156
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=20.77 E-value=1.3e+02 Score=20.23 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=27.8
Q ss_pred CCCeeeeEEEEEcCCeeEecHHHHHHHHcCCCCc
Q 046319 59 QGNRTTPSYVAFTDTERLIGDAAKNQVATNPQNT 92 (135)
Q Consensus 59 ~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~ 92 (135)
.+-..+|+.+.++.++.++...+......+|...
T Consensus 95 ~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~ 128 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGAC 128 (132)
T ss_pred cCCCCCCEEEEECCCCCEEchhHHHHHHhCcccc
Confidence 4456789999998778899999999988887754
No 157
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.64 E-value=1.2e+02 Score=23.74 Aligned_cols=22 Identities=5% Similarity=-0.316 Sum_probs=17.5
Q ss_pred cccceEeccCCceEEEEEe-CCe
Q 046319 30 RVMKTWVSLFLISCVGVWK-NDR 51 (135)
Q Consensus 30 ~~i~gID~GTtns~vA~~~-~g~ 51 (135)
..++|||+|.|++.+++.+ +|.
T Consensus 6 ~~~lgidIggt~i~~~l~d~~g~ 28 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLDGE 28 (314)
T ss_pred cEEEEEEecCCEEEEEEECCCCc
Confidence 3456799999999999986 454
No 158
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.22 E-value=97 Score=27.94 Aligned_cols=26 Identities=8% Similarity=-0.116 Sum_probs=22.1
Q ss_pred cceEeccCCceEEEEEeCCeEEEEEC
Q 046319 32 MKTWVSLFLISCVGVWKNDRVQIIAN 57 (135)
Q Consensus 32 i~gID~GTtns~vA~~~~g~~~ii~n 57 (135)
+.++|-|.|.+-+|.+.+|.+++...
T Consensus 280 ~i~~DmGGTStDva~i~~G~pe~~~e 305 (674)
T COG0145 280 AIVFDMGGTSTDVALIIDGEPEISSE 305 (674)
T ss_pred EEEEEcCCcceeeeeeecCcEEeecc
Confidence 44589999999999999999887653
No 159
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.00 E-value=46 Score=28.01 Aligned_cols=13 Identities=8% Similarity=-0.148 Sum_probs=9.1
Q ss_pred cccccceEeccCCc
Q 046319 28 RRRVMKTWVSLFLI 41 (135)
Q Consensus 28 ~~~~i~gID~GTtn 41 (135)
|...|. ||||||-
T Consensus 192 RNPciS-iDFGTTL 204 (445)
T TIGR03285 192 RNPCIS-IDFGTTL 204 (445)
T ss_pred cCceEE-eeccccc
Confidence 445555 8999984
Done!