BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046320
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KAE|A Chain A, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAE|B Chain B, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAH|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAH|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAR|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
pdb|1KAR|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
Length = 434
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 106/229 (46%), Gaps = 46/229 (20%)
Query: 2 EKIFGPGNKYVTAAKMILQLQFFPAILKKSHDKVQTAQVLVIADRYPSPLHVAADLLSQ- 60
+KIFGPGN +VT AK + + A + ++VLVIAD +P VA+DLLSQ
Sbjct: 204 DKIFGPGNAFVTEAKRQVSQRLDGAAIDX---PAGPSEVLVIADSGATPDFVASDLLSQA 260
Query: 61 -RGPDSQXXXXXXXXXXXXKAIEEEIRMQCQSLP-----------NFMVFAREIMRAITF 108
GPDSQ + + E + Q LP + ++ +++ + +
Sbjct: 261 EHGPDSQVILLTPAADXARR-VAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEI 319
Query: 109 SNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPESARMYG----------------- 151
SN Y PEHLI+ ++ + I +AGS+ G+W+PESA Y
Sbjct: 320 SNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCS 379
Query: 152 GVSLDSFLKYVTVQSLA------------TMAEIEGLEAHKRAITLRLQ 188
+ L F K TVQ L+ T+A E L AHK A+TLR+
Sbjct: 380 SLGLADFQKRXTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVN 428
>pdb|1K75|A Chain A, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication.
pdb|1K75|B Chain B, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication
Length = 434
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 106/229 (46%), Gaps = 46/229 (20%)
Query: 2 EKIFGPGNKYVTAAKMILQLQFFPAILKKSHDKVQTAQVLVIADRYPSPLHVAADLLSQ- 60
+KIFGPGN +VT AK + + A + ++VLVIAD +P VA+DLLSQ
Sbjct: 204 DKIFGPGNAFVTEAKRQVSQRLDGAAIDX---PAGPSEVLVIADSGATPDFVASDLLSQA 260
Query: 61 -RGPDSQXXXXXXXXXXXXKAIEEEIRMQCQSLP-----------NFMVFAREIMRAITF 108
GPDSQ + + E + Q LP + ++ +++ + +
Sbjct: 261 EHGPDSQVILLTPAADXARR-VAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEI 319
Query: 109 SNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPESARMYG----------------- 151
SN Y PEHLI+ ++ + I +AGS+ G+W+PESA Y
Sbjct: 320 SNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCS 379
Query: 152 GVSLDSFLKYVTVQSLA------------TMAEIEGLEAHKRAITLRLQ 188
+ L F K TVQ L+ T+A E L AHK A+TLR+
Sbjct: 380 SLGLADFQKRXTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVN 428
>pdb|4GIC|A Chain A, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
pdb|4GIC|B Chain B, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
Length = 423
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 21/163 (12%)
Query: 2 EKIFGPGNKYVTAAKMILQLQFFPAILKKSHDKVQT-AQVLVIADRYPSPLHVAADLLSQ 60
+KI GPGN YV AK ++ Q D V +++LVI+D P +A DL SQ
Sbjct: 213 DKIVGPGNIYVATAKKLVFGQV-------GIDXVAGPSEILVISDGRTDPDWIAXDLFSQ 265
Query: 61 R-----------GPDSQXXXXXXXXXXXXKAIEEEIRMQCQSLP--NFMVFAREIMRAIT 107
PD+ E + SL + ++ +A
Sbjct: 266 AEHDEDAQAILISPDAAHLEAVQASIERLLPGXERAEVIRTSLERRGGXILVDDLEQAAA 325
Query: 108 FSNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPESARMY 150
+N APEHL +S + E I NAG++ G +T E+ Y
Sbjct: 326 VANRIAPEHLELSVESPEVLVESIRNAGAIFXGRYTAEALGDY 368
>pdb|3BBO|M Chain M, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 121
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 90 QSLPNFMVFAREIMRAI---TFSNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPES 146
+++PN + E++RA+ T L +I+ D NA ++ E P+
Sbjct: 45 EAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDD---------NAAVIIDQEGNPKG 95
Query: 147 ARMYGGVSLDSFLKYVTVQSLA 168
R++G ++ + K+ + SLA
Sbjct: 96 TRIFGAIARELRQKFAKIVSLA 117
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 172 EIEGLEAHKRAITLRLQDIAARQVSSI 198
EI G EA KRAIT+ + I QV++I
Sbjct: 204 EITGAEAAKRAITMIEKQIGGDQVAAI 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,822,501
Number of Sequences: 62578
Number of extensions: 159988
Number of successful extensions: 347
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 6
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)