Query 046320
Match_columns 198
No_of_seqs 115 out of 1078
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 19:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kae_A HDH, histidinol dehydro 100.0 1E-75 3.6E-80 540.7 17.9 182 1-190 203-430 (434)
2 4gic_A HDH, histidinol dehydro 100.0 4E-70 1.4E-74 502.4 14.8 168 1-176 212-423 (423)
3 3etf_A Putative succinate-semi 91.9 0.59 2E-05 42.3 8.6 47 96-143 373-423 (462)
4 3ifg_A Succinate-semialdehyde 91.5 1.4 4.8E-05 40.4 10.7 67 96-163 396-479 (484)
5 3ros_A NAD-dependent aldehyde 91.4 0.98 3.3E-05 41.5 9.6 69 95-164 369-454 (484)
6 3jz4_A Succinate-semialdehyde 91.1 0.86 2.9E-05 41.6 8.9 66 95-161 392-474 (481)
7 4h7n_A Aldehyde dehydrogenase; 90.8 1.5 5.1E-05 39.9 10.1 68 95-163 371-458 (474)
8 3ek1_A Aldehyde dehydrogenase; 90.8 1.7 5.8E-05 40.1 10.6 67 96-163 414-497 (504)
9 3my7_A Alcohol dehydrogenase/a 90.8 2.2 7.5E-05 38.6 11.1 50 95-145 343-403 (452)
10 2j6l_A Aldehyde dehydrogenase 90.6 2.6 8.7E-05 38.7 11.5 69 95-163 407-494 (500)
11 2wme_A BADH, betaine aldehyde 89.7 1.3 4.5E-05 40.8 8.8 67 95-162 394-477 (490)
12 3lns_A Benzaldehyde dehydrogen 89.6 1.2 4.3E-05 40.2 8.5 48 95-143 365-417 (457)
13 2ve5_A BADH, betaine aldehyde 89.4 1.4 4.9E-05 40.1 8.8 48 96-144 395-446 (490)
14 3rh9_A Succinate-semialdehyde 89.4 1.6 5.6E-05 40.2 9.3 68 95-163 395-479 (506)
15 3r64_A NAD dependent benzaldeh 89.0 1 3.4E-05 41.5 7.5 49 95-144 395-447 (508)
16 3prl_A NADP-dependent glyceral 88.9 1.5 5.1E-05 40.5 8.6 68 95-163 393-478 (505)
17 3ty7_A Putative aldehyde dehyd 88.8 3.4 0.00012 37.5 10.8 67 96-163 390-472 (478)
18 3iwj_A Putative aminoaldehyde 88.3 2.2 7.4E-05 39.2 9.2 48 95-143 400-451 (503)
19 4dng_A Uncharacterized aldehyd 87.9 1.4 4.7E-05 40.2 7.6 49 95-144 388-440 (485)
20 3u4j_A NAD-dependent aldehyde 87.5 2.8 9.4E-05 38.9 9.5 68 95-163 409-493 (528)
21 3qan_A 1-pyrroline-5-carboxyla 87.2 5.1 0.00018 37.2 11.1 69 95-164 424-512 (538)
22 4f9i_A Proline dehydrogenase/d 85.4 6.5 0.00022 39.8 11.5 48 95-144 918-970 (1026)
23 4e4g_A Methylmalonate-semialde 84.3 2.2 7.6E-05 39.5 7.1 46 97-144 415-465 (521)
24 3r31_A BADH, betaine aldehyde 83.3 0.92 3.1E-05 42.1 4.1 69 95-164 399-484 (517)
25 2w8n_A Succinate-semialdehyde 82.9 1.2 4.2E-05 40.7 4.7 68 95-163 397-481 (487)
26 2h5g_A Delta 1-pyrroline-5-car 82.9 1 3.5E-05 41.1 4.2 69 95-164 342-431 (463)
27 3ju8_A Succinylglutamic semial 81.9 20 0.00069 32.6 12.4 48 96-144 388-439 (490)
28 1a4s_A ALDH, betaine aldehyde 80.9 1.4 4.8E-05 40.6 4.3 69 95-164 407-492 (503)
29 1ez0_A ALDH, aldehyde dehydrog 80.7 0.86 2.9E-05 41.9 2.8 47 96-143 385-439 (510)
30 3pqa_A Lactaldehyde dehydrogen 80.5 4.5 0.00015 37.1 7.6 66 96-163 376-459 (486)
31 3v4c_A Aldehyde dehydrogenase 79.5 1 3.5E-05 41.6 3.0 71 96-166 420-516 (528)
32 1o04_A Aldehyde dehydrogenase, 79.4 1.6 5.4E-05 40.3 4.2 68 95-163 406-490 (500)
33 3kyj_B CHEY6 protein, putative 79.2 11 0.00039 26.6 8.0 97 61-161 9-118 (145)
34 3k2w_A Betaine-aldehyde dehydr 77.5 0.89 3E-05 41.8 1.9 68 95-163 399-483 (497)
35 3ed6_A Betaine aldehyde dehydr 76.6 1.1 3.9E-05 41.5 2.3 48 96-144 422-473 (520)
36 1uxt_A Glyceraldehyde-3-phosph 74.8 2 6.7E-05 39.5 3.4 68 95-163 402-487 (501)
37 3sza_A Aldehyde dehydrogenase, 74.6 1.5 5E-05 40.1 2.5 48 95-143 357-408 (469)
38 1wnd_A Putative betaine aldehy 73.9 1.4 5E-05 40.4 2.3 49 95-144 406-458 (495)
39 1euh_A NADP dependent non phos 73.1 1.3 4.6E-05 40.2 1.8 48 95-143 384-436 (475)
40 1bxs_A Aldehyde dehydrogenase; 72.6 1.6 5.4E-05 40.2 2.2 67 95-162 407-490 (501)
41 2imp_A Lactaldehyde dehydrogen 71.8 1.6 5.6E-05 39.7 2.1 67 95-162 390-473 (479)
42 2d4e_A 5-carboxymethyl-2-hydro 71.8 1.3 4.4E-05 40.9 1.4 49 95-144 416-468 (515)
43 4ghk_A Gamma-glutamyl phosphat 71.5 2.1 7E-05 38.7 2.7 49 95-144 346-398 (444)
44 1t90_A MMSDH, probable methylm 70.8 1.3 4.5E-05 40.4 1.2 49 95-144 388-440 (486)
45 3b4w_A Aldehyde dehydrogenase; 70.6 1.9 6.6E-05 39.5 2.3 68 95-163 394-477 (495)
46 3i44_A Aldehyde dehydrogenase; 69.5 2.2 7.5E-05 39.2 2.4 46 95-141 410-459 (497)
47 1vlu_A Gamma-glutamyl phosphat 68.0 4.4 0.00015 37.0 4.1 67 95-164 347-436 (468)
48 4e3x_A Delta-1-pyrroline-5-car 66.7 5.6 0.00019 37.3 4.6 68 96-163 455-546 (563)
49 2y53_A Aldehyde dehydrogenase 66.2 2.7 9.1E-05 38.9 2.3 48 95-143 410-471 (534)
50 3haz_A Proline dehydrogenase; 65.8 40 0.0014 34.0 10.8 47 96-143 894-946 (1001)
51 1o20_A Gamma-glutamyl phosphat 65.4 4.9 0.00017 36.0 3.8 49 95-144 329-381 (427)
52 2o2p_A Formyltetrahydrofolate 64.9 2.2 7.4E-05 39.6 1.4 67 95-162 426-511 (517)
53 3lte_A Response regulator; str 64.6 23 0.0008 24.2 6.6 98 66-167 7-115 (132)
54 4f3x_A Putative aldehyde dehyd 63.1 1.5 5E-05 40.4 -0.1 50 95-145 408-461 (498)
55 3gl9_A Response regulator; bet 63.1 34 0.0011 23.5 7.4 97 67-167 4-112 (122)
56 3n53_A Response regulator rece 62.6 36 0.0012 23.6 7.5 96 67-167 5-112 (140)
57 3k9d_A LMO1179 protein, aldehy 61.4 6.4 0.00022 35.6 3.8 68 96-164 349-445 (464)
58 4e7p_A Response regulator; DNA 59.8 33 0.0011 24.3 6.8 97 67-167 22-130 (150)
59 3jst_A Putative pterin-4-alpha 56.1 13 0.00043 27.1 4.0 32 83-114 9-51 (97)
60 3jte_A Response regulator rece 54.8 48 0.0016 23.0 6.9 97 67-167 5-113 (143)
61 1uzb_A 1-pyrroline-5-carboxyla 51.7 19 0.00066 33.0 5.4 48 95-143 424-475 (516)
62 3f6c_A Positive transcription 50.6 32 0.0011 23.5 5.3 96 68-167 4-110 (134)
63 1nrz_A PTS system, sorbose-spe 49.2 36 0.0012 27.1 6.0 66 64-132 26-94 (164)
64 1ble_A Fructose permease; phos 48.9 33 0.0011 27.2 5.7 66 64-132 27-95 (163)
65 2v6u_A Pterin-4A-carbinolamine 48.1 18 0.00063 26.6 3.8 64 84-159 13-90 (104)
66 2ebb_A Pterin-4-alpha-carbinol 47.4 21 0.00073 26.1 4.1 65 83-159 6-83 (101)
67 3nhm_A Response regulator; pro 47.3 64 0.0022 21.9 8.5 97 66-167 5-112 (133)
68 1vsq_C Mannose-specific phosph 46.3 40 0.0014 26.8 5.8 66 64-132 29-97 (165)
69 3c3m_A Response regulator rece 43.7 78 0.0027 21.9 7.7 97 67-167 5-113 (138)
70 3cg4_A Response regulator rece 42.5 80 0.0027 21.6 7.8 97 67-167 9-117 (142)
71 3eod_A Protein HNR; response r 42.4 77 0.0026 21.4 7.3 65 67-135 9-77 (130)
72 3rqi_A Response regulator prot 40.4 52 0.0018 24.5 5.4 97 67-167 9-115 (184)
73 3r0j_A Possible two component 40.3 1E+02 0.0034 24.1 7.3 98 66-167 24-131 (250)
74 3a10_A Response regulator; pho 39.7 79 0.0027 20.8 8.0 95 68-167 4-107 (116)
75 3i42_A Response regulator rece 39.0 87 0.003 21.1 7.1 64 67-134 5-72 (127)
76 2qsj_A DNA-binding response re 38.8 94 0.0032 21.8 6.4 96 68-167 6-114 (154)
77 3lfj_A Manxb, phosphotransfera 37.1 48 0.0016 27.1 5.0 67 64-133 47-116 (187)
78 1ru0_A DCOH-like protein dcohm 37.0 25 0.00085 25.9 3.0 53 95-159 38-93 (105)
79 3c97_A Signal transduction his 36.8 1E+02 0.0035 21.2 8.2 95 67-167 12-120 (140)
80 3gt7_A Sensor protein; structu 36.1 1.1E+02 0.0039 21.6 7.5 97 67-167 9-117 (154)
81 3hxa_A Pterin-4-alpha-carbinol 35.4 23 0.00078 26.1 2.6 52 95-158 36-90 (104)
82 2qvg_A Two component response 35.3 1.1E+02 0.0036 21.0 7.2 96 68-167 10-125 (143)
83 3lua_A Response regulator rece 35.0 1.1E+02 0.0036 21.1 6.1 63 67-133 6-75 (140)
84 3grc_A Sensor protein, kinase; 34.1 1.1E+02 0.0038 20.9 7.6 98 66-167 7-117 (140)
85 3hv2_A Response regulator/HD d 34.0 1.2E+02 0.0042 21.3 7.5 98 66-167 15-123 (153)
86 3kht_A Response regulator; PSI 34.0 1.2E+02 0.0039 21.0 7.5 98 66-167 6-118 (144)
87 2pl1_A Transcriptional regulat 32.7 1.1E+02 0.0036 20.2 6.8 96 68-167 3-108 (121)
88 3eqz_A Response regulator; str 31.7 48 0.0016 22.5 3.7 96 67-167 5-115 (135)
89 3h5i_A Response regulator/sens 31.4 1.3E+02 0.0044 20.8 7.3 97 67-167 7-114 (140)
90 3t6k_A Response regulator rece 30.3 1.3E+02 0.0046 20.7 7.5 98 66-167 5-114 (136)
91 1ydh_A AT5G11950; structural g 30.3 1.1E+02 0.0039 25.0 6.3 27 94-120 169-195 (216)
92 3cg0_A Response regulator rece 30.0 1.3E+02 0.0044 20.4 7.0 96 67-167 11-118 (140)
93 1qkk_A DCTD, C4-dicarboxylate 29.2 1.5E+02 0.0051 20.8 9.0 97 67-167 5-111 (155)
94 3m6m_D Sensory/regulatory prot 29.0 1.5E+02 0.0051 20.7 6.5 99 65-167 14-126 (143)
95 1yio_A Response regulatory pro 28.5 1.7E+02 0.0059 21.6 6.6 97 67-167 6-112 (208)
96 3ber_A Probable ATP-dependent 26.7 2.4E+02 0.0081 22.3 9.1 94 41-140 83-185 (249)
97 3f6p_A Transcriptional regulat 26.7 1.5E+02 0.005 19.9 7.5 63 67-133 4-70 (120)
98 1dz3_A Stage 0 sporulation pro 26.4 1.5E+02 0.0052 19.9 7.6 63 67-133 4-72 (130)
99 1mvo_A PHOP response regulator 26.3 1.5E+02 0.0052 20.0 7.3 97 67-167 5-111 (136)
100 1ys7_A Transcriptional regulat 26.0 2.1E+02 0.0072 21.5 8.2 97 67-167 9-115 (233)
101 3kto_A Response regulator rece 26.0 91 0.0031 21.5 4.4 97 67-167 8-116 (136)
102 3dkp_A Probable ATP-dependent 25.7 2.1E+02 0.0071 22.1 6.9 57 34-93 64-126 (245)
103 3t8y_A CHEB, chemotaxis respon 25.3 1.9E+02 0.0065 20.7 7.7 65 67-135 27-97 (164)
104 3p3v_A PTS system, N-acetylgal 24.4 1.2E+02 0.0041 24.0 5.2 75 64-141 29-108 (163)
105 3hzh_A Chemotaxis response reg 24.0 1.9E+02 0.0066 20.4 7.7 65 67-135 38-109 (157)
106 2pln_A HP1043, response regula 23.5 1.8E+02 0.0061 19.8 8.4 98 66-167 19-123 (137)
107 3ilh_A Two component response 23.4 1.8E+02 0.0061 19.7 7.5 98 66-167 10-129 (146)
108 3hdg_A Uncharacterized protein 23.2 1.8E+02 0.0061 19.7 7.8 97 67-167 9-115 (137)
109 1dc7_A NTRC, nitrogen regulati 22.5 1.5E+02 0.0053 19.3 4.9 72 96-167 30-111 (124)
110 3moi_A Probable dehydrogenase; 22.1 3.1E+02 0.011 23.3 7.8 77 38-122 28-121 (387)
111 4a2p_A RIG-I, retinoic acid in 22.0 2.3E+02 0.0078 24.4 7.0 51 41-92 25-82 (556)
112 2gkg_A Response regulator homo 21.7 1.8E+02 0.006 19.1 6.9 97 67-167 7-115 (127)
113 1kgs_A DRRD, DNA binding respo 21.5 2.6E+02 0.0087 20.9 8.2 39 96-134 29-71 (225)
114 2dc0_A Probable amidase; struc 21.5 26 0.00089 31.4 0.8 94 45-141 12-114 (434)
115 4ew6_A D-galactose-1-dehydroge 21.4 2.9E+02 0.01 23.1 7.4 61 55-123 73-139 (330)
116 3cnb_A DNA-binding response re 20.9 2E+02 0.0068 19.4 7.5 97 67-167 10-120 (143)
117 3tbk_A RIG-I helicase domain; 20.7 1.9E+02 0.0065 24.8 6.1 51 41-92 22-79 (555)
118 1i3c_A Response regulator RCP1 20.5 2.2E+02 0.0076 19.8 6.9 98 66-167 9-127 (149)
119 2pl3_A Probable ATP-dependent 20.3 2.9E+02 0.01 21.1 8.1 92 41-138 65-168 (236)
No 1
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=100.00 E-value=1e-75 Score=540.66 Aligned_cols=182 Identities=39% Similarity=0.642 Sum_probs=177.1
Q ss_pred CcEEecCCcHHHHHHHHHh---hcccccccccccCc-cCCcceEEEEeCCCCCHHHHHHHHhhc--cCCCCceEEEecCc
Q 046320 1 AEKIFGPGNKYVTAAKMIL---QLQFFPAILKKSHD-KVQTAQVLVIADRYPSPLHVAADLLSQ--RGPDSQGVLVIVGD 74 (198)
Q Consensus 1 VDkIvGPGN~yV~~AK~~v---~~~~~~~~V~~gID-~AGPSEvlViAD~tAnp~~vAaDLLaQ--Hdp~a~avLvt~~~ 74 (198)
||||+||||+||++|||+| +|. | ||| +|||||++||||++|||+|||+||||| |||+|++||||+|+
T Consensus 203 VDkI~GPGN~yVa~AKr~Vs~~~G~-----V--gIDm~AGPSEilViAD~tAnp~~vAaDLLsQAEHd~~a~aiLvT~s~ 275 (434)
T 1kae_A 203 VDKIFGPGNAFVTEAKRQVSQRLDG-----A--AIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAA 275 (434)
T ss_dssp CSEEECCCCHHHHHHHHHHHHCTTS-----C--EESCCCCCCEEEEEECTTSCHHHHHHHHHHHHTTCTTCEEEEEESCH
T ss_pred ccEEECCCcHHHHHHHHHhHhhcCc-----c--ccCCCCCCceEEEEeCCCCCHHHHHHHHHHHhccCCCCcEEEEECCH
Confidence 8999999999999999999 774 9 999 999999999999999999999999999 99999999999999
Q ss_pred hHhHHHHHHHHHHHHhhCC-----------ceEEEeCCHHHHHHHHhhhcCcceeecccChHHHHhccchhcccccCCCC
Q 046320 75 GVDIKAIEEEIRMQCQSLP-----------NFMVFAREIMRAITFSNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWT 143 (198)
Q Consensus 75 ~l~~~~V~~~i~~~l~~l~-----------g~iv~v~~l~eai~~~N~~APEHL~l~~~d~~~~l~~I~nAGsiFlG~~t 143 (198)
+++ ++|.++|++||+.|| ..+|+|+|++||++++|+||||||+|+++||++++++|||||+||||+||
T Consensus 276 ~la-~~V~~ev~~ql~~lpr~~ia~~sl~~~~ii~v~~l~ea~~~~N~~APEHLel~~~dp~~~l~~I~nAGaIFlG~~t 354 (434)
T 1kae_A 276 DMA-RRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWS 354 (434)
T ss_dssp HHH-HHHHHHHHHHHTTCTTHHHHHHHHTTCEEEECSSHHHHHHHHHHHCCSEEEEESTTHHHHGGGCCSCSEEEESTTC
T ss_pred HHH-HHHHHHHHHHHHhCChHHHHHHHHHcCeEEEECCHHHHHHHHHHhhhHhhhhhhcCHHHHHhhcCcccchhcCCCC
Confidence 995 999999999999999 46899999999999999999999999999999999999999999999999
Q ss_pred ccc-----------------cccccCCccccccccchHHHH------------HHHHHhhCCHHHHHHHHHHHHhh
Q 046320 144 PES-----------------ARMYGGVSLDSFLKYVTVQSL------------ATMAEIEGLEAHKRAITLRLQDI 190 (198)
Q Consensus 144 p~a-----------------AR~~sgLsv~~FlK~~s~~~~------------~~lA~~EGL~aHa~si~~R~~~~ 190 (198)
|++ |||+|||||+||||++|+|+| .+||++|||++|++|++.|++++
T Consensus 355 pe~~GDY~aG~NHvLPT~G~AR~~sgLsV~~F~K~~s~~~~s~~~l~~l~~~~~~lA~~EGL~aHa~av~~R~~~~ 430 (434)
T 1kae_A 355 PESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNAL 430 (434)
T ss_dssp CHHHHHHTSSSCCCCCCTTGGGTCCCSCGGGGEEEEEEEEECHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhcccccCCCcccCCCCceeccCCCcHHhccceeeEEEECHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 999 999999999999999999998 89999999999999999999865
No 2
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=100.00 E-value=4e-70 Score=502.43 Aligned_cols=168 Identities=31% Similarity=0.436 Sum_probs=149.8
Q ss_pred CcEEecCCcHHHHHHHHHhhcccccccccccCc-cCCcceEEEEeCCCCCHHHHHHHHhhc--cCCCCceEEEecCchHh
Q 046320 1 AEKIFGPGNKYVTAAKMILQLQFFPAILKKSHD-KVQTAQVLVIADRYPSPLHVAADLLSQ--RGPDSQGVLVIVGDGVD 77 (198)
Q Consensus 1 VDkIvGPGN~yV~~AK~~v~~~~~~~~V~~gID-~AGPSEvlViAD~tAnp~~vAaDLLaQ--Hdp~a~avLvt~~~~l~ 77 (198)
|||||||||+||++|||+|+|. | ||| +|||||++||||+++||+|||+||||| |||+|++||||+|++++
T Consensus 212 VDkIvGPGN~yVa~AKr~v~g~-----V--gIDm~AGPSEilViAD~~a~p~~vAaDLlsQAEHd~~a~~iLvT~s~~la 284 (423)
T 4gic_A 212 VDKIVGPGNIYVATAKKLVFGQ-----V--GIDMVAGPSEILVISDGRTDPDWIAMDLFSQAEHDEDAQAILISPDAAHL 284 (423)
T ss_dssp CSEEECCCCHHHHHHHHHHBTT-----B--EECCCCCCCEEEEEECSCSCHHHHHHHHHHHHTTCTTCEEEEEESCHHHH
T ss_pred eeEEecCCcHHHHHHHHHhcCC-----c--CcccccccceEEEEeCCCCCHHHHHHHHHHhhccCCCCeEEEEeCcHHHH
Confidence 8999999999999999999885 9 999 999999999999999999999999999 99999999999999995
Q ss_pred HHHHHHHHHHHHhhCC------------ceEEEeCCHHHHHHHHhhhcCcceeecccChHHHHhccchhcccccCCCCcc
Q 046320 78 IKAIEEEIRMQCQSLP------------NFMVFAREIMRAITFSNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPE 145 (198)
Q Consensus 78 ~~~V~~~i~~~l~~l~------------g~iv~v~~l~eai~~~N~~APEHL~l~~~d~~~~l~~I~nAGsiFlG~~tp~ 145 (198)
++|.++|++||+.+| |.+|+|+|++||++++|+||||||+|+++||++++++|+|||+||||+|||+
T Consensus 285 -~~V~~~i~~~l~~l~r~~i~~~sl~~~g~ii~v~~~~ea~~~~N~~APEHLel~~~~~~~~l~~i~nAGaIFlG~~tp~ 363 (423)
T 4gic_A 285 -EAVQASIERLLPGMERAEVIRTSLERRGGMILVDDLEQAAAVANRIAPEHLELSVESPEVLVESIRNAGAIFMGRYTAE 363 (423)
T ss_dssp -HHHHHHHHHHGGGCTTHHHHHHHHHHHCEEEECSSHHHHHHHHHHHCCSEEEEESSCHHHHGGGCCCCSEEEEC-----
T ss_pred -HHHHHHHHHHHhhCccHHHHHHHHhcCceEEEEeehHHHHHHHHhhChHHhhhhhCCHHHHHhhCcEeceeecCCCCch
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred c-----------------cccccCCccccccccchHHHH------------HHHHHhhCC
Q 046320 146 S-----------------ARMYGGVSLDSFLKYVTVQSL------------ATMAEIEGL 176 (198)
Q Consensus 146 a-----------------AR~~sgLsv~~FlK~~s~~~~------------~~lA~~EGL 176 (198)
+ |||+|||||+||||++|+|++ .+||++|||
T Consensus 364 ~~GDY~aG~NHvLPT~G~Ar~~sgLsv~~F~K~~s~~~~s~~~l~~l~~~~~~lA~~EgL 423 (423)
T 4gic_A 364 ALGDYCAGPNHVLPTSGTARFSSPLGVYDFQKRSSLIYCSPDGADQLGRTASLLAWGEGL 423 (423)
T ss_dssp -----------CCCCTTGGGTCCCCCGGGGEEEEEEEC----------------------
T ss_pred hhhhcCcCCCccCCCCCcccccCCCCHHHeeeeeeEEEECHHHHHHHHHHHHHHHHhCCC
Confidence 9 999999999999999999998 889999997
No 3
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=91.90 E-value=0.59 Score=42.29 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=35.9
Q ss_pred EEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCC
Q 046320 96 MVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWT 143 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~t 143 (198)
++.++|+|||++++|..- +--..|.++|.. .+.++++ +|.|++..+.
T Consensus 373 v~~~~~~deAi~~an~~~~gL~a~v~t~d~~~a~~~~~~l~-aG~v~vN~~~ 423 (462)
T 3etf_A 373 ITVAKDAAHALALANDSEFGLSATIFTADDTLAAEMAARLE-CGGVFINGYS 423 (462)
T ss_dssp EEEESSHHHHHHHHHCSSCCSCEEEECSCHHHHHHHHHHCC-SSEEEESSCC
T ss_pred EEEcCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHhCC-cceEEECCCC
Confidence 456889999999999853 234567788864 6667776 9999999754
No 4
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=91.50 E-value=1.4 Score=40.35 Aligned_cols=67 Identities=9% Similarity=-0.014 Sum_probs=48.1
Q ss_pred EEEeCCHHHHHHHHhhhcC-cceeecccCh---HHHHhccchhcccccCCCCccc-------------cccccCCccccc
Q 046320 96 MVFAREIMRAITFSNLYAP-EHLIVSAKDT---EKWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDSF 158 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~AP-EHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~F 158 (198)
++.++|.|||++++|..-- =-..+.++|. +.+.++++ +|.|++..+.... .|..|..+++.|
T Consensus 396 v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~-aG~v~iN~~~~~~~~~PfGG~k~SG~Gr~~g~~gl~~~ 474 (484)
T 3ifg_A 396 LFRFASEEELVRLANDTEFGLAAYLYSRDIGRVWRVAEALE-YGMVGINTGLISNEVAPFGGVKQSGLGREGSHYGIDDY 474 (484)
T ss_dssp EEEECCHHHHHHHHHCSSEESEEEEECCBHHHHHHHHHHCC-CSEEEESCSCCCCSSSCBCCEETTEECCBSTTTTTGGG
T ss_pred EEEeCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHhCC-cceEEEcCCCCCCCCCCcCCcCcCcCCCCchHHHHHHh
Confidence 5568899999999998421 2345677776 46777776 8999999754222 677777788888
Q ss_pred cccch
Q 046320 159 LKYVT 163 (198)
Q Consensus 159 lK~~s 163 (198)
+..-+
T Consensus 475 ~~~k~ 479 (484)
T 3ifg_A 475 VVIKY 479 (484)
T ss_dssp EEEEE
T ss_pred hceEE
Confidence 76543
No 5
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=91.38 E-value=0.98 Score=41.47 Aligned_cols=69 Identities=20% Similarity=0.143 Sum_probs=49.3
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.++.++|++||++++|..- +--..|.++|. +.+++++ .+|.|++..++... .|..|..+++.
T Consensus 369 ~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l-~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr~~G~~gl~~ 447 (484)
T 3ros_A 369 EVFVVEDDNAAIQLANDSSYGLGSSVIGSDIDRAKKVSAQI-ETGMTVINGRWITSGELPFGGIKKSGYGRELSGLGLMA 447 (484)
T ss_dssp EEEEESSHHHHHHHHHSSSCCSCEEEECSCHHHHHHHHHHS-CSSCCEETSCCCCCTTSCBCCSGGGEESCBSHHHHHTT
T ss_pred EEEEcCCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhC-ccceEEECCCCCCCCCCCcCCcCcccCCcCchHHHHHH
Confidence 4566889999999999853 23456778886 4566777 58999999854322 66666677788
Q ss_pred ccccchH
Q 046320 158 FLKYVTV 164 (198)
Q Consensus 158 FlK~~s~ 164 (198)
|++.-++
T Consensus 448 ft~~K~v 454 (484)
T 3ros_A 448 FVNEHLV 454 (484)
T ss_dssp TCEEEEE
T ss_pred hheeEEE
Confidence 8766553
No 6
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=91.13 E-value=0.86 Score=41.56 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=44.7
Q ss_pred eEEEeCCHHHHHHHHhhhcCc-ceeecccChH---HHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYAPE-HLIVSAKDTE---KWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~APE-HL~l~~~d~~---~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.++.++|+|||++++|..--= -..+.++|.. .+.++++ +|.|++..++... .|+.|..+++.
T Consensus 392 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~-~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~g~~~ 470 (481)
T 3jz4_A 392 PLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALE-YGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIED 470 (481)
T ss_dssp EEEEECCHHHHHHHHHCSSCCSEEEEECCBHHHHHHHHHHCC-CSEEEESCSCCCCSSSCBCCSGGGEESCBSHHHHHHT
T ss_pred EEEEECCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCC-eeeEEECCCCCCCCCCCcCCcccCcCCCCchHHHHHH
Confidence 355678999999999984322 3557777764 5666775 9999999765322 45555555666
Q ss_pred cccc
Q 046320 158 FLKY 161 (198)
Q Consensus 158 FlK~ 161 (198)
|.+.
T Consensus 471 ~t~~ 474 (481)
T 3jz4_A 471 YLEI 474 (481)
T ss_dssp TEEE
T ss_pred hhce
Confidence 6544
No 7
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=90.81 E-value=1.5 Score=39.90 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=45.8
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCCccc----------------cccccCCc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWTPES----------------ARMYGGVS 154 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp~a----------------AR~~sgLs 154 (198)
.|+.++|+|||++++|.-- +=-..|.++|.. .+.++++ +|.|++..++... .|..|.-+
T Consensus 371 ~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~-aG~v~iN~~~~~~~~~~~pfgG~~~SG~G~~~~G~~g 449 (474)
T 4h7n_A 371 PVMPFPDVEEAVYLANDTIYGLSAAVFAGSEDEALKVARQLN-AGAISINDAALTAMMHEGEKNAFNFSGLGGSRVGAAG 449 (474)
T ss_dssp EEEEESSHHHHHHHHHCSSCCSEEEEECSSHHHHHHHHTTSC-CSEEEESSSCGGGTCCCSCCCCCGGGEESCCSSTTHH
T ss_pred EEEEECCHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHhCC-eeEEEECCCCccCCcCCCCCCCcCCCCCCCCcchHHH
Confidence 4677899999999999731 234577788874 5666664 8999998754322 24444455
Q ss_pred cccccccch
Q 046320 155 LDSFLKYVT 163 (198)
Q Consensus 155 v~~FlK~~s 163 (198)
++.|++.-+
T Consensus 450 ~~~f~~~k~ 458 (474)
T 4h7n_A 450 LKRFLRKQA 458 (474)
T ss_dssp HHTTEEEEE
T ss_pred HHHhCeEEE
Confidence 667776544
No 8
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=90.77 E-value=1.7 Score=40.12 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=47.8
Q ss_pred EEEeCCHHHHHHHHhhhcC-cceeecccChH---HHHhccchhcccccCCCCccc-------------cccccCCccccc
Q 046320 96 MVFAREIMRAITFSNLYAP-EHLIVSAKDTE---KWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDSF 158 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~AP-EHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~F 158 (198)
++.++|+|||++++|..-- =-..|.++|.. .+.++++ +|.|++..++... .|..|..+++.|
T Consensus 414 v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~-aG~V~vN~~~~~~~~~PfGG~k~SG~Gr~~G~~gl~~~ 492 (504)
T 3ek1_A 414 LFAFDTEEEVIAQANDTIFGLAAYFYTENFSRAIRVSEALE-YGMVGHNTGLISNEVAPFGGVKQSGLGREGSKYGIEEY 492 (504)
T ss_dssp EEEECCHHHHHHHHHCSSCCSEEEEECCBHHHHHHHHHHSC-CSEEEESCSCCCCSSSCBCCSGGGEESCBSTTTSGGGG
T ss_pred EEEeCCHHHHHHHHhCCCCCeEEEEEcCCHHHHHHHHHhCC-cCeEEECCCCCCCCCCCcCCcCcCcCCCCCcHHHHHHh
Confidence 4567899999999998521 23456777764 5667775 9999999764221 677777788888
Q ss_pred cccch
Q 046320 159 LKYVT 163 (198)
Q Consensus 159 lK~~s 163 (198)
++.-+
T Consensus 493 t~~K~ 497 (504)
T 3ek1_A 493 LETKY 497 (504)
T ss_dssp EEEEE
T ss_pred hceEE
Confidence 76544
No 9
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=90.76 E-value=2.2 Score=38.55 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=39.7
Q ss_pred eEEEeCCHHHHHHHHhhh-----cCcceeecccCh---HH---HHhccchhcccccCCCCcc
Q 046320 95 FMVFAREIMRAITFSNLY-----APEHLIVSAKDT---EK---WESIIENAGSMLFGEWTPE 145 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~-----APEHL~l~~~d~---~~---~l~~I~nAGsiFlG~~tp~ 145 (198)
.++.++|++||++++|.. -+--..|.++|. +. +..+++ +|.|++..++|-
T Consensus 343 ~v~~~~~~~eAi~~an~~~~~~g~Glta~i~t~d~~~a~~i~~~a~~l~-~G~V~VN~~~~~ 403 (452)
T 3my7_A 343 GMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYFGDKMK-TARILINIPTTH 403 (452)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHSSCCEEEEESCTTTCHHHHHHHHHHCC-CSEEEESCCCC-
T ss_pred EEEEeCCHHHHHHHHHhcccccCCCCEEEEEcCCHHHHHHHHHHHHhCC-EEEEEECCCCCC
Confidence 355689999999999996 467788999884 44 677775 899999998766
No 10
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=90.57 E-value=2.6 Score=38.73 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=48.8
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChHHHHhcc----chhcccccCCCCccc--------------cccccCCcc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTEKWESII----ENAGSMLFGEWTPES--------------ARMYGGVSL 155 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~~~l~~I----~nAGsiFlG~~tp~a--------------AR~~sgLsv 155 (198)
.++.++|++||++++|..- +--..+.++|......-. -.+|.|++..++... .|+.|..++
T Consensus 407 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~~~~~~G~V~vN~~~~~~~~~~PfGG~k~SG~G~~~g~~~~ 486 (500)
T 2j6l_A 407 YVFKFQNEEEVFAWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGGRESGSDAW 486 (500)
T ss_dssp EEEEECCHHHHHHHHHTSSCCSEEEEECCCHHHHHHHHSTTSCCSSEEEESSCTTCCCTTSEECCSGGGCSCCEESTTGG
T ss_pred EEEeeCCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHhhccCCeeEEEECCCCccCCCCCCcCCcCCCCCCCcchHHHH
Confidence 3556789999999999953 334667888886554444 357999998754321 677777778
Q ss_pred ccccccch
Q 046320 156 DSFLKYVT 163 (198)
Q Consensus 156 ~~FlK~~s 163 (198)
+.|++.-+
T Consensus 487 ~~f~~~k~ 494 (500)
T 2j6l_A 487 KQYMRRST 494 (500)
T ss_dssp GGGEEEEE
T ss_pred HHhhceEE
Confidence 88877654
No 11
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=89.66 E-value=1.3 Score=40.78 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=45.9
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.|+.++|+|||++++|.-- +=-..|.++|. +.+.++++ +|.|++..+.... .|+.|.-+++.
T Consensus 394 ~v~~~~~~deAi~~aN~~~yGL~a~v~t~d~~~a~~~~~~l~-aG~v~iN~~~~~~~~~PFGG~k~SG~Gre~G~~gl~~ 472 (490)
T 2wme_A 394 SILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLE-AGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAH 472 (490)
T ss_dssp EEEEESCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSC-CSEEEESCCSCCCTTSCBCCSGGGEESCBSHHHHHHT
T ss_pred EEEEeCCHHHHHHHHhcCCCCCeEEEEcCCHHHHHHHHHHCC-eeEEEEeCCCCCCCCCCcccccccccCchhHHHHHHH
Confidence 4566899999999999731 22456788886 46777775 8999998765443 45555555666
Q ss_pred ccccc
Q 046320 158 FLKYV 162 (198)
Q Consensus 158 FlK~~ 162 (198)
|++.-
T Consensus 473 ft~~K 477 (490)
T 2wme_A 473 YTRIK 477 (490)
T ss_dssp TEEEE
T ss_pred hhcee
Confidence 65543
No 12
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=89.57 E-value=1.2 Score=40.22 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=36.4
Q ss_pred eEEEeCCHHHHHHHHhhhcCc--ceeecccChH---HHHhccchhcccccCCCC
Q 046320 95 FMVFAREIMRAITFSNLYAPE--HLIVSAKDTE---KWESIIENAGSMLFGEWT 143 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~APE--HL~l~~~d~~---~~l~~I~nAGsiFlG~~t 143 (198)
.++.++|++||++++|.+-|- -..|.++|.. .+.+++ .+|.|++..++
T Consensus 365 ~v~~~~~~deAi~~aN~~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~v~vN~~~ 417 (457)
T 3lns_A 365 PVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGIINQI-QSGDAQVNGVM 417 (457)
T ss_dssp EEEEESCHHHHHHHHHHHSCSCSEEEEECSCHHHHHHHHHTS-CCSEEEESCCS
T ss_pred EEEEeCCHHHHHHHHHcCCCCCeEEEEECCCHHHHHHHHHhC-CcceEEEcCCC
Confidence 466689999999999994444 4567788864 566666 48999999864
No 13
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=89.41 E-value=1.4 Score=40.10 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=35.9
Q ss_pred EEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCCc
Q 046320 96 MVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp 144 (198)
++.++|++||++++|..- +--..|.++|.. .+.+++ .+|.|++..+..
T Consensus 395 v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~v~vN~~~~ 446 (490)
T 2ve5_A 395 ILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRL-EAGICWINTWGE 446 (490)
T ss_dssp EEEESCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHS-CCSEEEESCCSC
T ss_pred EEEeCCHHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhC-CcceEEECCCCC
Confidence 556789999999999953 234567777764 566777 499999998643
No 14
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=89.38 E-value=1.6 Score=40.24 Aligned_cols=68 Identities=19% Similarity=0.061 Sum_probs=47.9
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.++.++|+|||++++|..- +--..|.++|. +.+.++++ +|.|++..++... .|+.|..+++.
T Consensus 395 ~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~-aG~V~vN~~~~~~~~~PfGG~k~SG~G~~~G~~gl~~ 473 (506)
T 3rh9_A 395 PMALFRTEEEVIDAGNDTEFGLASYVFTADAERAQRVAAGLR-FGHVGWNTGTGPTPEAPFGGMKASGIGREGGLEGLFE 473 (506)
T ss_dssp EEEEECCHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCC-CSEEEESCCCCCCTTSCBCCSGGGEESCBSHHHHHTT
T ss_pred EEEEeCCHHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCC-cceEEEcCCCCCCCCCCccCcCcCcCCcCccHHHHHH
Confidence 3566889999999999843 22456777886 46667774 8999999865322 56666667777
Q ss_pred ccccch
Q 046320 158 FLKYVT 163 (198)
Q Consensus 158 FlK~~s 163 (198)
|+..-+
T Consensus 474 ft~~K~ 479 (506)
T 3rh9_A 474 FVEAQT 479 (506)
T ss_dssp TEEEEE
T ss_pred hcceEE
Confidence 766443
No 15
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=89.01 E-value=1 Score=41.55 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=35.0
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCCc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp 144 (198)
.++.++|+|||++++|..- +--..|.++|. +.+.+++ .+|.|++..++.
T Consensus 395 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~V~vN~~~~ 447 (508)
T 3r64_A 395 SVLKADDEAHAAELANASDFGLSAAVWSKDIDRAAQFALQI-DSGMVHINDLTV 447 (508)
T ss_dssp EEEEESSHHHHHHHHTSSSCCSCEEEECSCHHHHHHHHTTS-CSSEEEECC---
T ss_pred EEEEeCCHHHHHHHHhCCCCCcEEEEEcCCHHHHHHHHHhC-CcceEEEcCCCC
Confidence 3566889999999999863 23456777886 4566676 589999998753
No 16
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=88.89 E-value=1.5 Score=40.48 Aligned_cols=68 Identities=18% Similarity=0.060 Sum_probs=47.4
Q ss_pred eEEEeCCHHHHHHHHhhhcC-cceeecccCh---HHHHhccchhcccccCCCCccc--------------cccccCCccc
Q 046320 95 FMVFAREIMRAITFSNLYAP-EHLIVSAKDT---EKWESIIENAGSMLFGEWTPES--------------ARMYGGVSLD 156 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~AP-EHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a--------------AR~~sgLsv~ 156 (198)
.|+.++|+|||++++|..-- =-..|.++|. +.+++++ .+|.|++..++... .|+.|..+++
T Consensus 393 ~V~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~V~iN~~~~~~~~~~PFGG~k~SG~Gr~~g~~~~~ 471 (505)
T 3prl_A 393 PIIRVKDANEAISLSNQSDYGLQASIFTKDTDRAINIGKHL-EVGTVHINAKTERGPDHFPFLGVKKSGLGVQGIKPSLL 471 (505)
T ss_dssp EEEEESSHHHHHHHHHTSSEESEEEEECSCHHHHHHHHHTS-CSSEEEESSCCCSCSTTSCBCCEETTEESCBSHHHHHH
T ss_pred EEEEeCCHHHHHHHHhCCCCCeEEEEEcCCHHHHHHHHHHC-CeeEEEEcCCCCCCCCCCCcCCcCcCCCCcCccHHHHH
Confidence 36668999999999998522 2456777786 4677777 59999999875421 5555555666
Q ss_pred cccccch
Q 046320 157 SFLKYVT 163 (198)
Q Consensus 157 ~FlK~~s 163 (198)
.|+..-+
T Consensus 472 ~f~~~k~ 478 (505)
T 3prl_A 472 SMTRERV 478 (505)
T ss_dssp HTEEEEE
T ss_pred HhhceEE
Confidence 7765444
No 17
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=88.79 E-value=3.4 Score=37.49 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=41.5
Q ss_pred EEEeCCHHHHHHHHhhhcC-cceeecccChH---HHHhccchhcccccCCCCccc------------cccccCCcccccc
Q 046320 96 MVFAREIMRAITFSNLYAP-EHLIVSAKDTE---KWESIIENAGSMLFGEWTPES------------ARMYGGVSLDSFL 159 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~AP-EHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp~a------------AR~~sgLsv~~Fl 159 (198)
++.++|++||++++|..-- --..|.++|.. .+.+++ .+|.|++....... .|..|..+++.|+
T Consensus 390 v~~~~~~~eAi~~an~~~~gL~a~v~t~d~~~a~~~~~~l-~~G~v~vN~~~~~~~~PfGG~k~SG~G~~~G~~~l~~~t 468 (478)
T 3ty7_A 390 VITYNDLDEAIQIANDTKYGLAGYVIGKDKETLHKVARSI-EAGTVEINEAGRKPDLPFGGYKQSGLGREWGDYGIEEFL 468 (478)
T ss_dssp EEEESSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHS-CSSEEEETTCC----------------------CCGGGE
T ss_pred EEecCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHhC-CcCeEEECCCCCCCCCCcCCcCcCcCCccchHHHHHHhc
Confidence 5568899999999998432 24567777864 566777 48999998722111 5666667777887
Q ss_pred ccch
Q 046320 160 KYVT 163 (198)
Q Consensus 160 K~~s 163 (198)
+.-+
T Consensus 469 ~~k~ 472 (478)
T 3ty7_A 469 EVKS 472 (478)
T ss_dssp EEEE
T ss_pred CeEE
Confidence 6544
No 18
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=88.26 E-value=2.2 Score=39.23 Aligned_cols=48 Identities=17% Similarity=0.030 Sum_probs=35.6
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCC
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWT 143 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~t 143 (198)
.++.++|+|||++++|..- +--..|.++|.. .++++++ +|.|++..+.
T Consensus 400 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~-aG~v~iN~~~ 451 (503)
T 3iwj_A 400 CVKTFSTEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFK-AGIVWVNCSQ 451 (503)
T ss_dssp EEEEESSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCC-SSEEEESSSC
T ss_pred EEEEeCCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCC-cceEEEcCCC
Confidence 3556789999999999842 234567787864 5667774 9999999754
No 19
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=87.92 E-value=1.4 Score=40.20 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=35.1
Q ss_pred eEEEeCCHHHHHHHHhhhcCc-ceeecccChH---HHHhccchhcccccCCCCc
Q 046320 95 FMVFAREIMRAITFSNLYAPE-HLIVSAKDTE---KWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~APE-HL~l~~~d~~---~~l~~I~nAGsiFlG~~tp 144 (198)
.++.++|++||++++|..--= -..|.++|.. .+.+++ .+|.|++..++.
T Consensus 388 ~v~~~~~~~eAi~~an~~~~gL~a~v~t~d~~~a~~~~~~l-~~G~v~vN~~~~ 440 (485)
T 4dng_A 388 TIIKAGSDQEAIDMANDTEYGLSSAVFTSDLEKGEKFALQI-DSGMTHVNDQSV 440 (485)
T ss_dssp EEEEESSHHHHHHHHHCSSCCSEEEEECSCHHHHHHHHTTS-CSSEEEESCC--
T ss_pred EEEEeCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHhc-CcceEEECCCCC
Confidence 355688999999999985322 3557778864 566666 589999998764
No 20
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=87.54 E-value=2.8 Score=38.94 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=47.0
Q ss_pred eEEEeCCHHHHHHHHhhhcC-cceeecccCh---HHHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYAP-EHLIVSAKDT---EKWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~AP-EHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.|+.++|++||++++|..-- --..|.++|. +.+++++ .+|.|++..++... .|+.|..+++.
T Consensus 409 ~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l-~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr~~G~~gl~~ 487 (528)
T 3u4j_A 409 STLTFKTADEAVALANATEFGLSASVWSTNLETALQTIRRI-RAGRCWINSVIDGTPELPIGGYKKSGLGRELGRYGFDE 487 (528)
T ss_dssp EEEEESSHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHS-CCSEEEESCCSCCCTTSCBCCSGGGEESCBSTTHHHHH
T ss_pred EEEEeCCHHHHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhC-CeeEEEECCCCCCCCCCCcCCcCcCCCCcCchHHHHHH
Confidence 35568899999999998522 2345677775 4677777 58999999865322 56666666777
Q ss_pred ccccch
Q 046320 158 FLKYVT 163 (198)
Q Consensus 158 FlK~~s 163 (198)
|+..-+
T Consensus 488 ft~~K~ 493 (528)
T 3u4j_A 488 YSQFKG 493 (528)
T ss_dssp TEEEEE
T ss_pred hhceEE
Confidence 765443
No 21
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=87.15 E-value=5.1 Score=37.20 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=48.9
Q ss_pred eEEEeCCHHHHHHHHhhhcC-cceeecccChH---HHHhccchhcccccC-CCCcc----c----------c-ccccCCc
Q 046320 95 FMVFAREIMRAITFSNLYAP-EHLIVSAKDTE---KWESIIENAGSMLFG-EWTPE----S----------A-RMYGGVS 154 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~AP-EHL~l~~~d~~---~~l~~I~nAGsiFlG-~~tp~----a----------A-R~~sgLs 154 (198)
.|+.++|++||++++|..-- =-..|.++|.. .+.+++ .+|.|++. .++.. . . |+.|..+
T Consensus 424 ~V~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l-~aG~V~iN~~~~~~~~~~~PfGG~k~SG~G~~~~G~~g 502 (538)
T 3qan_A 424 AFSKANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREF-HVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDY 502 (538)
T ss_dssp EEEEESSHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHC-CCSEEEESSCSCCCCTTTSCBCCEETTBSCCCBTSTTT
T ss_pred EEEEeCCHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhC-CeeEEEEeCCCCCCCCCCCCcCCcCcCCCCcccccHHH
Confidence 35668899999999998421 23567778864 566676 59999999 54432 1 5 7777788
Q ss_pred cccccccchH
Q 046320 155 LDSFLKYVTV 164 (198)
Q Consensus 155 v~~FlK~~s~ 164 (198)
++.|+..-++
T Consensus 503 l~~ft~~k~v 512 (538)
T 3qan_A 503 LALHMQAKTV 512 (538)
T ss_dssp GGGGEEEEEE
T ss_pred HHHhhCeEEE
Confidence 8888876553
No 22
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=85.37 E-value=6.5 Score=39.78 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=35.6
Q ss_pred eEEEeCCHHHHHHHHhhhcCcc--eeecccChH---HHHhccchhcccccCCCCc
Q 046320 95 FMVFAREIMRAITFSNLYAPEH--LIVSAKDTE---KWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~APEH--L~l~~~d~~---~~l~~I~nAGsiFlG~~tp 144 (198)
.|+.++|++||++++|.. +-. ..|.+.|.. .+.++++ +|.+++...+.
T Consensus 918 ~V~~~~d~deAI~~aN~t-~yGLt~~V~t~d~~~a~~~~~~l~-aG~v~IN~~~~ 970 (1026)
T 4f9i_A 918 AVMRAKDFDQAIEWANST-QFALTGGIFSRSPEHLAKARREFR-VGNLYINRNNT 970 (1026)
T ss_dssp EEEEESSHHHHHHHHTCS-SCCSEEEEECCCHHHHHHHHHHSC-CSEEEESSCSC
T ss_pred EEEEeCCHHHHHHHHHcC-CCCCeEEEECCCHHHHHHHHHhCC-EeeEEEcCCCC
Confidence 356688999999999985 333 457777764 5666665 99999998653
No 23
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=84.32 E-value=2.2 Score=39.50 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=34.0
Q ss_pred EEeCCHHHHHHHHhhhcCc--ceeecccChH---HHHhccchhcccccCCCCc
Q 046320 97 VFAREIMRAITFSNLYAPE--HLIVSAKDTE---KWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 97 v~v~~l~eai~~~N~~APE--HL~l~~~d~~---~~l~~I~nAGsiFlG~~tp 144 (198)
+.++|++||++++|.. |- -..|.++|.. .+.+++ .+|.|++..++.
T Consensus 415 ~~~~~~deAi~~aN~~-~~gLaa~v~t~d~~~a~~~~~~l-~aG~V~vN~~~~ 465 (521)
T 4e4g_A 415 VRARNYEEALSLPMKH-EYGNGVAIYTRDGDAARDFASRI-NIGMVGVNVPIP 465 (521)
T ss_dssp CCBSSHHHHHHHHHHS-SEESEEEEECSBHHHHHHHHHHC-CCSEEEESCSSC
T ss_pred EEeCCHHHHHHHHhcC-CCCeEEEEECCCHHHHHHHHHhC-CeeeEEECCCCC
Confidence 3467999999999984 33 3456777764 566777 589999998754
No 24
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=83.28 E-value=0.92 Score=42.06 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=51.0
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.|+.++|+|||++++|..- +=-..|.++|. +.+++++ .+|.|++..++... .|+.|..+++.
T Consensus 399 ~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l-~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr~~G~~gl~~ 477 (517)
T 3r31_A 399 CVLDFDDEDEVLARANATEFGLAGGVFTADLARAHRVVDGL-EAGTLWINTYNLCPVEIPFGGSKQSGFGRENSAAALEH 477 (517)
T ss_dssp EEEEECCHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHS-CCSEEEESSCCCCCTTSCBCCEETTEECCBSTGGGGGG
T ss_pred EEEEeCCHHHHHHHHhCCCCCeeEEEEeCCHHHHHHHHHHC-CcceEEECCCCCCCCCCCcCCcCcCCCCcCchHHHHHH
Confidence 4667899999999999843 22356777786 4677777 49999999864322 78888888888
Q ss_pred ccccchH
Q 046320 158 FLKYVTV 164 (198)
Q Consensus 158 FlK~~s~ 164 (198)
|++.-++
T Consensus 478 ft~~K~v 484 (517)
T 3r31_A 478 YSELKTV 484 (517)
T ss_dssp SEEEEEE
T ss_pred hhceEEE
Confidence 8876553
No 25
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=82.86 E-value=1.2 Score=40.69 Aligned_cols=68 Identities=15% Similarity=0.054 Sum_probs=49.1
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.++.++|+|||++++|..- +--..+.++|.. .+++++ .+|.|++..++... .|+.|..+++.
T Consensus 397 ~v~~~~~~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~v~vN~~~~~~~~~PfGG~~~SG~G~~~G~~~l~~ 475 (487)
T 2w8n_A 397 PVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQL-EVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDE 475 (487)
T ss_dssp EEEEESCHHHHHHHHTCTTCCSEEEEECCCHHHHHHHHHHS-CSSEEEESCSCCCCTTSCBCCSGGGEESCBSTTTGGGG
T ss_pred EEEEeCCHHHHHHHHhCCCCCceEEEeCCCHHHHHHHHHhC-CeeeEEEcCCCCCCCCCCCCCCCCCCcCCCchHHHHHH
Confidence 3555789999999999842 235667888874 466677 59999999755322 67777778888
Q ss_pred ccccch
Q 046320 158 FLKYVT 163 (198)
Q Consensus 158 FlK~~s 163 (198)
|++.-+
T Consensus 476 f~~~k~ 481 (487)
T 2w8n_A 476 YLELKY 481 (487)
T ss_dssp GEEEEE
T ss_pred hcCccE
Confidence 876544
No 26
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=82.85 E-value=1 Score=41.07 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=47.8
Q ss_pred eEEEeCCHHHHHHHHhhhcCc-ceeecccChH---HHHhccchhcccccCCCCccc-------------c--cc--ccCC
Q 046320 95 FMVFAREIMRAITFSNLYAPE-HLIVSAKDTE---KWESIIENAGSMLFGEWTPES-------------A--RM--YGGV 153 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~APE-HL~l~~~d~~---~~l~~I~nAGsiFlG~~tp~a-------------A--R~--~sgL 153 (198)
.++.++|+|||++++|.+--= -..|.++|.. .+.++++ +|.|++..++... . |+ .|..
T Consensus 342 ~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~-aG~V~iN~~~~~~~~~PfGG~k~SG~G~~r~~~~G~~ 420 (463)
T 2h5g_A 342 CIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVD-SACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPV 420 (463)
T ss_dssp EEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCC-SSEEEESSCGGGCSTTTTTSSCCSCEECCSSSCCEEC
T ss_pred EEEEeCCHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHhCC-eeEEEEeCCccCCCCCCCCCCccCcCCCCcccCCCHH
Confidence 455689999999999995322 2678888874 5666764 8999999765322 3 54 5556
Q ss_pred ccccccccchH
Q 046320 154 SLDSFLKYVTV 164 (198)
Q Consensus 154 sv~~FlK~~s~ 164 (198)
+++.|+..-++
T Consensus 421 gl~~ft~~K~v 431 (463)
T 2h5g_A 421 GLEGLLTTKWL 431 (463)
T ss_dssp CGGGGEEEEEE
T ss_pred HHHHhceeEEE
Confidence 67777765543
No 27
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=81.93 E-value=20 Score=32.59 Aligned_cols=48 Identities=13% Similarity=0.019 Sum_probs=35.0
Q ss_pred EEEeCCHHHHHHHHhhhcC-cceeecccChH---HHHhccchhcccccCCCCc
Q 046320 96 MVFAREIMRAITFSNLYAP-EHLIVSAKDTE---KWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~AP-EHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp 144 (198)
++.++|++||++++|..-- --..+.++|.. .+..++ .+|.|++..++.
T Consensus 388 v~~~~~~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~v~vN~~~~ 439 (490)
T 3ju8_A 388 VIRYSDFAAAIREANATQYGLAAGLLSDSRERFEQFLVES-RAGIVNWNKQLT 439 (490)
T ss_dssp EEEESSHHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHC-CSSEEEESSCSS
T ss_pred EEEeCCHHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHhc-CcceEEECCCcC
Confidence 4457899999999998422 24567788864 555565 589999998654
No 28
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=80.90 E-value=1.4 Score=40.56 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=50.1
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.++.++|+|||++++|..- +--..|.++|. +.+++++ .+|.|++..++... .|..|..+++.
T Consensus 407 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~V~vN~~~~~~~~~PfGG~k~SG~G~~~G~~~l~~ 485 (503)
T 1a4s_A 407 SVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANL-EAGTCYINTYSISPVEVPFGGYKMSGFGRENGQATVDY 485 (503)
T ss_dssp EEEEECCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHS-CSSEEEESCCCCCCTTSCBCCSGGGEECCBSTTGGGGG
T ss_pred EEEecCCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHC-ceeEEEECCCCCCCCCCCCCCcCCCCCCccchHHHHHH
Confidence 4666899999999999852 23456777787 4566777 59999999765322 67777778888
Q ss_pred ccccchH
Q 046320 158 FLKYVTV 164 (198)
Q Consensus 158 FlK~~s~ 164 (198)
|++.-++
T Consensus 486 f~~~k~v 492 (503)
T 1a4s_A 486 YSQLKTV 492 (503)
T ss_dssp SEEEEEE
T ss_pred hcCceEE
Confidence 8765543
No 29
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=80.69 E-value=0.86 Score=41.94 Aligned_cols=47 Identities=19% Similarity=0.471 Sum_probs=36.1
Q ss_pred EEEeCCHHHHHHHHhhhcCcce--eecccCh-----HHHHhccc-hhcccccCCCC
Q 046320 96 MVFAREIMRAITFSNLYAPEHL--IVSAKDT-----EKWESIIE-NAGSMLFGEWT 143 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~APEHL--~l~~~d~-----~~~l~~I~-nAGsiFlG~~t 143 (198)
++.++|++||++++|.. |-.| .+.++|. +.++++++ .+|.|++..++
T Consensus 385 v~~~~~~deai~~aN~~-~~gLaa~v~t~d~~~~~a~~~~~~l~~~aG~V~iN~~~ 439 (510)
T 1ez0_A 385 IVVCENVADMLSLSEML-AGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWP 439 (510)
T ss_dssp EEEESSHHHHHHHHHTC-CCEEEEEEECCGGGHHHHHHHHHHHHTTEEEEEESSCS
T ss_pred EEEeCCHHHHHHHHhcC-CCCeEEEEEccCcCHHHHHHHHHHHhhcccEEEECCCC
Confidence 45578999999999996 4444 5677764 56777786 89999999764
No 30
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=80.55 E-value=4.5 Score=37.07 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=43.7
Q ss_pred EEEeCCHHHHHHHHhhhcC-cceeecccChH---HHHhccchhcccccCCCCccc--------------cccccCCcccc
Q 046320 96 MVFAREIMRAITFSNLYAP-EHLIVSAKDTE---KWESIIENAGSMLFGEWTPES--------------ARMYGGVSLDS 157 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~AP-EHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp~a--------------AR~~sgLsv~~ 157 (198)
++.++| +||++++|..-- =-..|.++|.. .+.+++ .+|.|++..++... .|+.|..+++.
T Consensus 376 v~~~~~-deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~v~vN~~~~~~~~~~PfGG~k~SG~Gr~~g~~gl~~ 453 (486)
T 3pqa_A 376 IIRTNE-EEMIDIANSTEYGLHSAIFTNDINKSLKFAENL-EFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEE 453 (486)
T ss_dssp EEEECH-HHHHHHHTCSSCCSEEEEECSBHHHHHHHHHHS-CSSEEEESSCTTCCCTTSCBCCSGGGEESCBSHHHHHHH
T ss_pred EEEEcH-HHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhC-CcceEEEeCCCCcCCCCCCCCCcCcCcCCCCCcHHHHHH
Confidence 455788 999999998422 24567777764 566777 48999999874311 45555555666
Q ss_pred ccccch
Q 046320 158 FLKYVT 163 (198)
Q Consensus 158 FlK~~s 163 (198)
|++.-+
T Consensus 454 f~~~k~ 459 (486)
T 3pqa_A 454 MSNIKT 459 (486)
T ss_dssp TEEEEE
T ss_pred hhceEE
Confidence 665443
No 31
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=79.51 E-value=1 Score=41.58 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=49.2
Q ss_pred EEEeCCHHHHHHHHhhhcC-cceeeccc--Ch---HHHHhccc-hhcccccCCCCcc------c-----------cccc-
Q 046320 96 MVFAREIMRAITFSNLYAP-EHLIVSAK--DT---EKWESIIE-NAGSMLFGEWTPE------S-----------ARMY- 150 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~AP-EHL~l~~~--d~---~~~l~~I~-nAGsiFlG~~tp~------a-----------AR~~- 150 (198)
|+.++|+|||++++|..-- --..|.++ |. +.+.++++ .+|.|++..++.. . .|+.
T Consensus 420 V~~~~~~deAi~~aN~~~~GL~a~v~t~d~d~~~a~~~a~~l~~~aG~V~vN~~~~~~~~~~~~pfGG~~~~Sg~gr~~~ 499 (528)
T 3v4c_A 420 VVRVGSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMVHGGPYPASTNFGATS 499 (528)
T ss_dssp EEEESSHHHHHHHHHHCCCEEEEEEECCGGGHHHHHHHHHHHHHHEEEEEESSCTTCCCCSTTCCCCCTTTTBSCTTCCS
T ss_pred EEecCCHHHHHHHHhcCCCCceEEEEcCCCCHHHHHHHHHHHhhcCcEEEEcCCCCCCccCCCCCCCCCCCCCCCCCCCC
Confidence 5567899999999998432 23456666 43 56777887 7999999986431 1 4542
Q ss_pred -cCCccccccccchHHH
Q 046320 151 -GGVSLDSFLKYVTVQS 166 (198)
Q Consensus 151 -sgLsv~~FlK~~s~~~ 166 (198)
|..+++.|++..++|.
T Consensus 500 ~G~~gl~~~~~~k~~q~ 516 (528)
T 3v4c_A 500 VGTMSIRRFLRPVAYQN 516 (528)
T ss_dssp SSGGGGGGGEEEEEEES
T ss_pred CcHHHHHHhchhHHhhc
Confidence 5567778888777654
No 32
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=79.42 E-value=1.6 Score=40.26 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=49.0
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.++.++|+|||++++|..- +--..|.++|. +.+++++ .+|.|++..++... .|+.|..+++.
T Consensus 406 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~V~iN~~~~~~~~~PfGG~k~SG~G~~~G~~gl~~ 484 (500)
T 1o04_A 406 QILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQAL-QAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQA 484 (500)
T ss_dssp EEEEECCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHC-CSSEEEESCSSCCCTTSCBCCSGGGEESCBSTGGGGGG
T ss_pred EEEeeCCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhC-CeeEEEECCCCCCCCCCCCCCcCCCCCCccchHHHHHH
Confidence 4666899999999999852 23466777786 4566777 48999999765321 67777777888
Q ss_pred ccccch
Q 046320 158 FLKYVT 163 (198)
Q Consensus 158 FlK~~s 163 (198)
|+..-+
T Consensus 485 f~~~K~ 490 (500)
T 1o04_A 485 YTEVKT 490 (500)
T ss_dssp GEEEEE
T ss_pred hcceEE
Confidence 876554
No 33
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=79.17 E-value=11 Score=26.58 Aligned_cols=97 Identities=11% Similarity=0.088 Sum_probs=54.7
Q ss_pred cCCCCceEEEecCchHhHHHHHHHHHHHHhhCCceE-E-EeCCHHHHHHHHhhh-cCcceeeccc----ChHHHHhccch
Q 046320 61 RGPDSQGVLVIVGDGVDIKAIEEEIRMQCQSLPNFM-V-FAREIMRAITFSNLY-APEHLIVSAK----DTEKWESIIEN 133 (198)
Q Consensus 61 Hdp~a~avLvt~~~~l~~~~V~~~i~~~l~~l~g~i-v-~v~~l~eai~~~N~~-APEHL~l~~~----d~~~~l~~I~n 133 (198)
|.+....|||..|... +.+.+.+.|+..+|.- + .+.+.++|++..... -|.=+.+-.. +-.+++++|+.
T Consensus 9 ~~~~~~~vlivdd~~~----~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~ 84 (145)
T 3kyj_B 9 HHGSPYNVMIVDDAAM----MRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKL 84 (145)
T ss_dssp --CCSEEEEEECSCHH----HHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHH
T ss_pred CCCCCCeEEEEcCCHH----HHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4444567888877644 3445666777776553 3 688999999988776 5654444332 34577777775
Q ss_pred hcc---cccC---CCCccccccccCCcccccccc
Q 046320 134 AGS---MLFG---EWTPESARMYGGVSLDSFLKY 161 (198)
Q Consensus 134 AGs---iFlG---~~tp~aAR~~sgLsv~~FlK~ 161 (198)
... +++. ...+......-..++.+|+.+
T Consensus 85 ~~~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~K 118 (145)
T 3kyj_B 85 KTRAKICMLSSVAVSGSPHAARARELGADGVVAK 118 (145)
T ss_dssp HCCCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBC
T ss_pred cCCCCeEEEEEeccCChHHHHHHHhCCCCEEEeC
Confidence 432 3333 222222222334456777644
No 34
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=77.50 E-value=0.89 Score=41.78 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=46.1
Q ss_pred eEEEeCCHHHHHHHHhhhcCc-ceeecccCh---HHHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYAPE-HLIVSAKDT---EKWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~APE-HL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.++.++|+|||++++|..--= -..|.++|. +.++++++ +|.|++..++... .|..|..+++.
T Consensus 399 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~-aG~v~vN~~~~~~~~~PfGG~k~SG~G~~~G~~gl~~ 477 (497)
T 3k2w_A 399 PIVKVSSMEQAIEFCNDSIYGLSAYVHTQSFANINQAISDLE-VGEVYINRGMGEQHQGFHNGWKQSGFGGEDGKFGLEQ 477 (497)
T ss_dssp EEEEESCHHHHHHHHTCSSEESEEEEECSBHHHHHHHHHHCC-SSEEEESCCSCCCTTSCBCCEETSEESCBSHHHHHHT
T ss_pred EEEEeCCHHHHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCC-eeEEEEcCCCCCCCCCCcCCcCCCcCCccchHHHHHH
Confidence 356789999999999985322 356777776 46667774 9999999865432 44444455666
Q ss_pred ccccch
Q 046320 158 FLKYVT 163 (198)
Q Consensus 158 FlK~~s 163 (198)
|++.-+
T Consensus 478 ft~~k~ 483 (497)
T 3k2w_A 478 YLEKKT 483 (497)
T ss_dssp TEEEEE
T ss_pred hcceEE
Confidence 665443
No 35
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=76.60 E-value=1.1 Score=41.47 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=36.3
Q ss_pred EEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCCc
Q 046320 96 MVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp 144 (198)
++.++|+|||++++|..- +=-..|.++|. +.+.++++ +|.|++..+..
T Consensus 422 v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~-aG~V~iN~~~~ 473 (520)
T 3ed6_A 422 VEGFETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLK-LGTVWINDFHP 473 (520)
T ss_dssp EEEESSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSC-CSEEEESCSCC
T ss_pred EEEeCCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHHCC-cceEEECCCCC
Confidence 566899999999999843 22456778886 46777775 99999997643
No 36
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=74.82 E-value=2 Score=39.55 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=47.0
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCC-Ccc---c----------cccccCCccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEW-TPE---S----------ARMYGGVSLD 156 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~-tp~---a----------AR~~sgLsv~ 156 (198)
.++.++|++||++++|..- +--..+.++|.. .+.+++ .+|.|++..+ +.. . .|..|..+++
T Consensus 402 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~~G~V~iN~~~~~~~~~~PfGG~k~SG~G~~~G~~~l~ 480 (501)
T 1uxt_A 402 LAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLL-EVGAIYINDMPRHGIGYYPFGGRKKSGVFREGIGYAVE 480 (501)
T ss_dssp EEEEESSHHHHHHHHHTSSEESEEEEECCCHHHHHHHHHHC-CSSEEEETSCCCCTTSSSCBCCEETTEESCBSTTTTHH
T ss_pred EEEeeCCHHHHHHHHhcCCCCcEEEEeCCCHHHHHHHHHhC-CEeeEEEeCCCCCCCCCCCCCCcCCCCCCccChHHHHH
Confidence 3555789999999999842 234567777874 556666 5899999976 322 1 6776777777
Q ss_pred cccccch
Q 046320 157 SFLKYVT 163 (198)
Q Consensus 157 ~FlK~~s 163 (198)
.|++.-+
T Consensus 481 ~f~~~k~ 487 (501)
T 1uxt_A 481 AVTAYKT 487 (501)
T ss_dssp HHEEEEE
T ss_pred HhCceeE
Confidence 7766544
No 37
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=74.57 E-value=1.5 Score=40.05 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=36.1
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCC
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWT 143 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~t 143 (198)
.|+.++|+|||++++|..- +=-..|.++|.. .+.++++ +|.|++..+.
T Consensus 357 ~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~-~G~V~vN~~~ 408 (469)
T 3sza_A 357 PIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETS-SGGVAANDVI 408 (469)
T ss_dssp EEEECSSHHHHHHHHHHSCCCSEEEEECSCHHHHHHHHHHCC-CSEEEESCSS
T ss_pred EEEecCCHHHHHHHHHcCCCCceEEEECCCHHHHHHHHHhCC-cceEEEeCCC
Confidence 3566889999999999843 334667888864 5566664 8999999875
No 38
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=73.87 E-value=1.4 Score=40.44 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=36.3
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCCc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp 144 (198)
.++.++|+|||++++|..- +--..|.++|. +.++++++ +|.|++..++.
T Consensus 406 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~-aG~V~iN~~~~ 458 (495)
T 1wnd_A 406 SVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQ-YGCTWVNTHFM 458 (495)
T ss_dssp EEEEECCHHHHHHHHHSSSCCSEEEEECSBHHHHHHHHHHCC-SSEEEESCCCC
T ss_pred EEEEeCCHHHHHHHHhcCCCCeeEEEECCCHHHHHHHHHhCC-cceEEECCCCC
Confidence 4666899999999999852 12456778786 45667774 89999997653
No 39
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=73.12 E-value=1.3 Score=40.21 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=35.7
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCC-CC
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGE-WT 143 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~-~t 143 (198)
.++.++|++||++++|..- +--..+.++|+. .+.+++ ++|.|++.. ++
T Consensus 384 ~v~~~~~~~eai~~an~~~~gL~a~v~t~d~~~~~~~~~~l-~~G~v~vN~~~~ 436 (475)
T 1euh_A 384 PIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQL-EVGTVHINNKTQ 436 (475)
T ss_dssp EEEEESCHHHHHHHHHHSSEESEEEEECSCHHHHHHHHHHS-CSSEEEESSCCC
T ss_pred EEEecCCHHHHHHHHhCCCCCeeEEEEeCCHHHHHHHHHhC-CEeeEEECCCCC
Confidence 4566889999999999962 124567778874 556666 589999997 54
No 40
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=72.57 E-value=1.6 Score=40.23 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=44.9
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCCccc-------------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWTPES-------------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv~~ 157 (198)
.++.++|+|||++++|..- +--..|.++|.. .++++++ +|.|++..++... .|+.|..+++.
T Consensus 407 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~-aG~V~iN~~~~~~~~~pfGG~k~SG~G~~~G~~~l~~ 485 (501)
T 1bxs_A 407 QIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQ-SGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHE 485 (501)
T ss_dssp EEEEECCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSC-CSEEEESCCCCCCTTSCBCCSGGGEESCBSHHHHHHT
T ss_pred EEEEeCCHHHHHHHHhcCCCCeeEEEEcCCHHHHHHHHHhcC-eeEEEECCCCCCCCCCCCCCcCcCCcCccchHHHHHH
Confidence 4666889999999999842 234567777864 5667774 8999999765322 44444455666
Q ss_pred ccccc
Q 046320 158 FLKYV 162 (198)
Q Consensus 158 FlK~~ 162 (198)
|+..-
T Consensus 486 f~~~K 490 (501)
T 1bxs_A 486 YTEVK 490 (501)
T ss_dssp TEEEE
T ss_pred hhCee
Confidence 65543
No 41
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=71.83 E-value=1.6 Score=39.70 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=45.5
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCCcc---c----------cccccCCcccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWTPE---S----------ARMYGGVSLDS 157 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp~---a----------AR~~sgLsv~~ 157 (198)
.++.++|++||++++|..- +--..|.++|.. .+.+++ .+|.|++..++.. . .|+.|..+++.
T Consensus 390 ~v~~~~~~~eAi~~aN~~~~gL~a~v~t~d~~~~~~~~~~l-~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~ 468 (479)
T 2imp_A 390 PVVAFDTLEDAISMANDSDYGLTSSIYTQNLNVAMKAIKGL-KFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHE 468 (479)
T ss_dssp EEEEESSHHHHHHHHHCSSEESEEEEECCCHHHHHHHHHHC-CSSEEEESSCCCCCTTSCBCCEETTEESCBSHHHHHHT
T ss_pred EEEeeCCHHHHHHHHhcCCCCeeEEEECCCHHHHHHHHHhC-CEeEEEECCCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Confidence 4666889999999999852 234667788864 566776 5999999976532 1 45545555666
Q ss_pred ccccc
Q 046320 158 FLKYV 162 (198)
Q Consensus 158 FlK~~ 162 (198)
|++.-
T Consensus 469 ~~~~k 473 (479)
T 2imp_A 469 YLQTQ 473 (479)
T ss_dssp TEEEE
T ss_pred hcCee
Confidence 65543
No 42
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=71.82 E-value=1.3 Score=40.94 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=36.1
Q ss_pred eEEEeCCHHHHHHHHhhhcC-cceeecccCh---HHHHhccchhcccccCCCCc
Q 046320 95 FMVFAREIMRAITFSNLYAP-EHLIVSAKDT---EKWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~AP-EHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp 144 (198)
.++.++|++||++++|..-- --..|.++|. +.+.+++ .+|.|++..++.
T Consensus 416 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~V~vN~~~~ 468 (515)
T 2d4e_A 416 VAIPFKDEEEALRKANDTKYGLAAYVFTRDLERAHRLALEL-EAGMVYLNSHNV 468 (515)
T ss_dssp EEEEESSHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHS-CSSEEEESSSCC
T ss_pred EEEeeCCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhC-CeeEEEECCCCC
Confidence 45668899999999998532 2355677775 4667777 599999997653
No 43
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=71.55 E-value=2.1 Score=38.69 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=36.2
Q ss_pred eEEEeCCHHHHHHHHhhhcC-cceeecccChH---HHHhccchhcccccCCCCc
Q 046320 95 FMVFAREIMRAITFSNLYAP-EHLIVSAKDTE---KWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~AP-EHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp 144 (198)
.++.++|++||++++|..-- =-..+.++|.. .+.+++ .+|.|++..++.
T Consensus 346 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~a~~l-~aG~V~vN~~~~ 398 (444)
T 4ghk_A 346 AIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREV-DSASVMVNASTR 398 (444)
T ss_dssp EEEEESSHHHHHHHHHHHSCSSEEEEECSBHHHHHHHHHHC-CSSEEEEEECGG
T ss_pred EEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhC-CcceEEEcCCCc
Confidence 45668999999999998532 23567777764 566676 499999987654
No 44
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=70.80 E-value=1.3 Score=40.43 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=36.7
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCCc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp 144 (198)
.++.++|++||++++|..- +--..|.++|.. .+.+++ .+|.|++..++.
T Consensus 388 ~v~~~~~~~eai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~v~vN~~~~ 440 (486)
T 1t90_A 388 SVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENI-DAGMLGINLGVP 440 (486)
T ss_dssp EEEEESSHHHHHHHHHHSSEESEEEEECCBHHHHHHHHHHC-CCSEEEESCSCC
T ss_pred EEEEeCCHHHHHHHHhCCCCCeEEEEEcCCHHHHHHHHHhC-CcCeEEECCCCC
Confidence 4666899999999999841 234667788864 566777 699999997543
No 45
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=70.64 E-value=1.9 Score=39.53 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=46.3
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCC--ccc----------cccccCCccccc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWT--PES----------ARMYGGVSLDSF 158 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~t--p~a----------AR~~sgLsv~~F 158 (198)
.++.++|+|||++++|..- +--..|.++|. +.+++++ .+|.|++..++ |.. .|..|..+++.|
T Consensus 394 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~V~iN~~~~~~~~PfGG~k~SG~Gr~~G~~gl~~~ 472 (495)
T 3b4w_A 394 AIIPYDTEEDAIAIANDSVYGLAGSVWTTDVPKGIKISQQI-RTGTYGINWYAFDPGSPFGGYKNSGIGRENGPEGVEHF 472 (495)
T ss_dssp EEEEESSHHHHHHHHHCSSCCSCCEEECSCHHHHHHHHHHS-CCSCCEESSCCCCTTSCBCCSGGGEESCBSHHHHHHTT
T ss_pred EEEecCCHHHHHHHHhcCCCCeEEEEECCCHHHHHHHHHhC-CEeEEEECCCCCCCCCCCCCCCCCCcCccchHHHHHHh
Confidence 4666899999999999842 22466788886 4566776 59999999765 211 555555566667
Q ss_pred cccch
Q 046320 159 LKYVT 163 (198)
Q Consensus 159 lK~~s 163 (198)
++.-+
T Consensus 473 ~~~k~ 477 (495)
T 3b4w_A 473 TQQKS 477 (495)
T ss_dssp EEEEE
T ss_pred cceeE
Confidence 54433
No 46
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=69.52 E-value=2.2 Score=39.25 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=34.5
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCC
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGE 141 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~ 141 (198)
.++.++|+|||++++|..- +=-..|.++|. +.+.++++ +|.|++..
T Consensus 410 ~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~-aG~V~iN~ 459 (497)
T 3i44_A 410 SLLPFNTEDEAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVR-SGMVEVNG 459 (497)
T ss_dssp EEEEESSHHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSC-CSEEEETT
T ss_pred EEEecCCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCC-cCeEEECC
Confidence 4566889999999999842 22456777886 46677775 99999984
No 47
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=68.04 E-value=4.4 Score=36.96 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=44.2
Q ss_pred eEEEeCCHHHHHHHHhhhcCcc--eeecccChH---HHHhccchhcccccCCCCccc------------------ccccc
Q 046320 95 FMVFAREIMRAITFSNLYAPEH--LIVSAKDTE---KWESIIENAGSMLFGEWTPES------------------ARMYG 151 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~APEH--L~l~~~d~~---~~l~~I~nAGsiFlG~~tp~a------------------AR~~s 151 (198)
.++.++|+|||++++|.. |-. ..|.++|.. .+.+++ .+|.|++..++... .|. |
T Consensus 347 ~v~~~~~~deAi~~aN~~-~~gL~a~v~t~d~~~a~~~~~~l-~aG~V~vN~~~~~~~~~pfG~Gg~~G~~~SG~g~~-G 423 (468)
T 1vlu_A 347 AAKFVTSTESAIQHINTH-SSRHTDAIVTENKANAEKFMKGV-DSSGVYWNASTRFADGFRYGFGAEVGISTSKIHAR-G 423 (468)
T ss_dssp EEEECCSHHHHHHHHTTS-CSSCEEEEECSCHHHHHHHHHHC-CCSEEEESSCGGGCC----------------------
T ss_pred EEEEeCCHHHHHHHHHhC-CCCceEEEEeCCHHHHHHHHHhC-CeeEEEEcCCCCCCCCCCCCCCCCcceecCCCCCC-c
Confidence 577799999999999995 333 456777764 556666 47999999765321 233 5
Q ss_pred CCccccccccchH
Q 046320 152 GVSLDSFLKYVTV 164 (198)
Q Consensus 152 gLsv~~FlK~~s~ 164 (198)
..+++.|++.-++
T Consensus 424 ~~gl~~f~~~K~v 436 (468)
T 1vlu_A 424 PVGLDGLVSYQYQ 436 (468)
T ss_dssp -CCSGGGEEEEEE
T ss_pred chHHHHhcceEEE
Confidence 5667777765554
No 48
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=66.72 E-value=5.6 Score=37.31 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=44.2
Q ss_pred EEEeCC--HHHHHHHHhhhcCc--ceeecccChH---HHHhccc-hhcccccCCCCccc----------------ccccc
Q 046320 96 MVFARE--IMRAITFSNLYAPE--HLIVSAKDTE---KWESIIE-NAGSMLFGEWTPES----------------ARMYG 151 (198)
Q Consensus 96 iv~v~~--l~eai~~~N~~APE--HL~l~~~d~~---~~l~~I~-nAGsiFlG~~tp~a----------------AR~~s 151 (198)
++.++| ++||++++|.-.|- -..|.++|.. .+.++++ .+|.|++..++... .|..|
T Consensus 455 V~~~~d~~~deAi~~ann~s~yGLta~V~t~d~~~~~~~~~~l~~~aG~v~IN~~~~~~~~~~~PFGG~k~SG~g~~~~G 534 (563)
T 4e3x_A 455 VYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDKPGG 534 (563)
T ss_dssp EEEECGGGHHHHHHHHHHSSSEESEEEEECSCHHHHHHHHHHTTTTCSEEEESSCSCCCCTTTSCCCCEETTBCCCCTTS
T ss_pred EEEECCCCHHHHHHHHHcCCCCCCEEEEEeCCHHHHHHHHHhhhcCeeEEEEcCCCCCCCcCCCCCCCccccCCCCccCC
Confidence 344564 89999999432332 4567888875 6677775 79999999764221 24455
Q ss_pred CCccccccccch
Q 046320 152 GVSLDSFLKYVT 163 (198)
Q Consensus 152 gLsv~~FlK~~s 163 (198)
..++..|+...+
T Consensus 535 ~~~l~~~~~~k~ 546 (563)
T 4e3x_A 535 PHYILRWTSPQV 546 (563)
T ss_dssp TTGGGGGBCCEE
T ss_pred HHHHHHhCceEE
Confidence 556677765544
No 49
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=66.19 E-value=2.7 Score=38.86 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=35.7
Q ss_pred eEEEeC---CH-----HHHHHHHhhhcCcc--eeecccCh---HHHHhccc-hhcccccCCCC
Q 046320 95 FMVFAR---EI-----MRAITFSNLYAPEH--LIVSAKDT---EKWESIIE-NAGSMLFGEWT 143 (198)
Q Consensus 95 ~iv~v~---~l-----~eai~~~N~~APEH--L~l~~~d~---~~~l~~I~-nAGsiFlG~~t 143 (198)
.++.++ |. +||++++|.. |-. ..|.++|. +.+.++++ .+|.|++..++
T Consensus 410 ~v~~~~~~~~~~~~~~deAi~~aN~~-~~gL~a~v~t~d~~~a~~~~~~l~~~aG~V~vN~~~ 471 (534)
T 2y53_A 410 SVAPYRVTTDTNALPEAHAVALARRG-QGSLVASIYSNDDAHLGRLALELADSHGRVHAISPS 471 (534)
T ss_dssp EEEEECCCCC---CTTHHHHHHHHTT-SSEEEEEEECSCHHHHHHHHHHHTTTEEEEEEECGG
T ss_pred EEEEECCCCCcccCCHHHHHHHHhCC-CCCceEEEECCCHHHHHHHHHHHHhhCCEEEEcCCc
Confidence 456678 99 9999999985 333 46778886 46777887 69999999753
No 50
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=65.84 E-value=40 Score=34.04 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=33.4
Q ss_pred EEEeCC--HHHHHHHHhhhcC-cceeecccChH---HHHhccchhcccccCCCC
Q 046320 96 MVFARE--IMRAITFSNLYAP-EHLIVSAKDTE---KWESIIENAGSMLFGEWT 143 (198)
Q Consensus 96 iv~v~~--l~eai~~~N~~AP-EHL~l~~~d~~---~~l~~I~nAGsiFlG~~t 143 (198)
|+.+++ ++||++++|..-- --..|.++|.. .+.+++ .+|.|++..++
T Consensus 894 V~~~~~~~ldeAI~~aN~t~yGLta~V~T~d~~~a~~~a~~l-~aG~V~VN~~~ 946 (1001)
T 3haz_A 894 VVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRV-QVGNIYVNRNM 946 (1001)
T ss_dssp EEEECGGGHHHHHHHHHHTCCCSEEEEECSCHHHHHHHHHHC-CCSEEEESSCS
T ss_pred EEEeCCCCHHHHHHHHHcCCCCceEEEEcCCHHHHHHHHHhC-CeeeEEEeCCC
Confidence 333564 8999999998532 24567788864 555666 58999999865
No 51
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=65.36 E-value=4.9 Score=36.03 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=36.7
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCCc
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWTP 144 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp 144 (198)
.++-++|+|||++++|..- +--..+.++|.. .+++++ .+|.|++..++.
T Consensus 329 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~~G~V~iN~~~~ 381 (427)
T 1o20_A 329 AIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEI-DAAAVYVNASTR 381 (427)
T ss_dssp EEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHC-CSSEEEESSCGG
T ss_pred EEEEECCHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHhC-CccEEEECCCCc
Confidence 4667899999999999842 235667888875 455665 589999997654
No 52
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=64.90 E-value=2.2 Score=39.55 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=45.1
Q ss_pred eEEEeCC--HHHHHHHHhhhc-CcceeecccCh---HHHHhccchhcccccCCCCccc-------------cccccCCcc
Q 046320 95 FMVFARE--IMRAITFSNLYA-PEHLIVSAKDT---EKWESIIENAGSMLFGEWTPES-------------ARMYGGVSL 155 (198)
Q Consensus 95 ~iv~v~~--l~eai~~~N~~A-PEHL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~a-------------AR~~sgLsv 155 (198)
.++.++| ++||++++|..- +=-..|.++|. +.+.+++ .+|.|++..+.... .|..|..++
T Consensus 426 ~v~~~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l-~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr~~G~~~l 504 (517)
T 2o2p_A 426 IISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKL-QAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAAL 504 (517)
T ss_dssp EEEEECTTCSHHHHHHHTCSSCCSCCEEECSBHHHHHHHHHHC-CSSEEEESCSSCCCTTSCBCCCGGGEECCBSHHHHH
T ss_pred EEEEcCCCCHHHHHHHHhcCCCCceEEEeCCCHHHHHHHHHhc-CEeEEEECCCCCCCCCCCcCCcCcCCcCccChHHHH
Confidence 4566889 999999999842 23456777786 4567777 59999999765322 444444455
Q ss_pred ccccccc
Q 046320 156 DSFLKYV 162 (198)
Q Consensus 156 ~~FlK~~ 162 (198)
+.|++.-
T Consensus 505 ~~~~~~k 511 (517)
T 2o2p_A 505 NEYLRIK 511 (517)
T ss_dssp HTTEEEE
T ss_pred HHhCCce
Confidence 6665543
No 53
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=64.62 E-value=23 Score=24.19 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=54.2
Q ss_pred ceEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhc------
Q 046320 66 QGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAG------ 135 (198)
Q Consensus 66 ~avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAG------ 135 (198)
.-|||..+.....+.+.. .|+...-.+..+.+.+++++......|.=+.+-. .+..+++++++..+
T Consensus 7 ~~ilivdd~~~~~~~l~~----~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIER----VLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp CEEEEECSCHHHHHHHHH----HHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred ccEEEEECCHHHHHHHHH----HHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 345665554432244443 4443323467789999999999888886443332 24568888887654
Q ss_pred ccccCCCCccccccccCCcccccc-ccchHHHH
Q 046320 136 SMLFGEWTPESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 136 siFlG~~tp~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
-|+++...+...+..-..++.+|+ |..+..++
T Consensus 83 ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l 115 (132)
T 3lte_A 83 ILVVSGLDKAKLQQAVTEGADDYLEKPFDNDAL 115 (132)
T ss_dssp EEEECCSCSHHHHHHHHHTCCEEECSSCCHHHH
T ss_pred EEEEeCCChHHHHHHHHhChHHHhhCCCCHHHH
Confidence 234444444332222223455654 55666655
No 54
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=63.12 E-value=1.5 Score=40.43 Aligned_cols=50 Identities=14% Similarity=-0.055 Sum_probs=36.3
Q ss_pred eEEEeCCHHHHHHHHhhhcCc-ceeecccCh---HHHHhccchhcccccCCCCcc
Q 046320 95 FMVFAREIMRAITFSNLYAPE-HLIVSAKDT---EKWESIIENAGSMLFGEWTPE 145 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~APE-HL~l~~~d~---~~~l~~I~nAGsiFlG~~tp~ 145 (198)
.++.++|.|||++++|..--= -..+.++|. +.+.+++ .+|.|++..++..
T Consensus 408 ~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l-~aG~V~vN~~~~~ 461 (498)
T 4f3x_A 408 SVTRFTGKDDAVAWANDSDYGLASSVWTKDISKAMRAASRL-QYGCTWINTHFML 461 (498)
T ss_dssp EEEEECTTSCHHHHHHSSSCCSEEEEECSBHHHHHHHHHHC-CSSEEEESCCSCC
T ss_pred EEEEeCCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhC-CcceEEEcCCCCC
Confidence 355678999999999984322 345677776 4667777 5999999986543
No 55
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=63.11 E-value=34 Score=23.48 Aligned_cols=97 Identities=9% Similarity=0.071 Sum_probs=55.5
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc------c
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG------S 136 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG------s 136 (198)
-|||..|.... .+.+...|+...-.++.+.|.++|++......|.=+.+-.. |-.+++++++... -
T Consensus 4 ~ILivdd~~~~----~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pi 79 (122)
T 3gl9_A 4 KVLLVDDSAVL----RKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp EEEEECSCHHH----HHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred eEEEEeCCHHH----HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCE
Confidence 46666665442 23344445544334677899999999998888865444333 4468888886532 2
Q ss_pred cccCCCC-ccccccccCCcccccc-ccchHHHH
Q 046320 137 MLFGEWT-PESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 137 iFlG~~t-p~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
|++..++ +......--.++.+|+ |..+..++
T Consensus 80 i~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L 112 (122)
T 3gl9_A 80 IVLTAKGGEEDESLALSLGARKVMRKPFSPSQF 112 (122)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEESSCCHHHH
T ss_pred EEEecCCchHHHHHHHhcChhhhccCCCCHHHH
Confidence 4444332 2223222334466665 45555554
No 56
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=62.59 E-value=36 Score=23.63 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=53.0
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc------c
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG------S 136 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG------s 136 (198)
-|||..+... ..+.+.+.|+.. ..+..+.+.++|++......|.=+.+-.. +..+++.+++... -
T Consensus 5 ~iLivdd~~~----~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 5 KILIIDQQDF----SRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp EEEEECSCHH----HHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred EEEEEeCCHH----HHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 4566655533 233444555555 56778899999999998888864444333 3457777777643 2
Q ss_pred cccCCCC-ccccccccCCcccccc-ccchHHHH
Q 046320 137 MLFGEWT-PESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 137 iFlG~~t-p~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
|++..+. +......-..++.+|+ |..+..++
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l 112 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDL 112 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHH
Confidence 4443332 2223333344566665 44566655
No 57
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=61.39 E-value=6.4 Score=35.59 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=48.0
Q ss_pred EEEeCCHHHHH----HHHhhhcC-cceeecccChH---HHHhccchhcccccCCCCcc------------c---------
Q 046320 96 MVFAREIMRAI----TFSNLYAP-EHLIVSAKDTE---KWESIIENAGSMLFGEWTPE------------S--------- 146 (198)
Q Consensus 96 iv~v~~l~eai----~~~N~~AP-EHL~l~~~d~~---~~l~~I~nAGsiFlG~~tp~------------a--------- 146 (198)
++.++|++||+ +++|..-- --..|.++|.. .+..+++ +|.|++..++.- .
T Consensus 349 v~~~~~~~eAi~~ai~~~n~~~~gl~a~i~t~d~~~a~~~~~~l~-~G~v~vN~~~~~~~~g~~~~~~~~~~~G~G~~G~ 427 (464)
T 3k9d_A 349 FYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALKKP-VSRLLVNTPGALGGIGATTNLVPALTLGCGAVGG 427 (464)
T ss_dssp EEEESSHHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHSS-EEEEEESSCHHHHHTTSSSSSCCCSCBBCTGGGT
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHhCC-EeEEEEECCccccccccCCCCCccccccCcCCCC
Confidence 55689999997 78886432 33567777764 5666665 899999877641 1
Q ss_pred cccccCCccccccccchH
Q 046320 147 ARMYGGVSLDSFLKYVTV 164 (198)
Q Consensus 147 AR~~sgLsv~~FlK~~s~ 164 (198)
.++++.+++.+|+..-++
T Consensus 428 g~~~~~~~~~~~~~~k~v 445 (464)
T 3k9d_A 428 SSSSDNIGPENLFNIRRI 445 (464)
T ss_dssp CSCCSBCCGGGSEEEEEE
T ss_pred CcCCCCCCHHHheEEEEE
Confidence 677778888999965554
No 58
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=59.77 E-value=33 Score=24.31 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=54.8
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCc--eEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhcc----
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPN--FMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAGS---- 136 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g--~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAGs---- 136 (198)
-|||..+... +.+.+.+.|....+ .+..+.|.+++++.....-|.=+.+-. .+..+++.+|+..+.
T Consensus 22 ~iLivdd~~~----~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 97 (150)
T 4e7p_A 22 KVLVAEDQSM----LRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKV 97 (150)
T ss_dssp EEEEECSCHH----HHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred EEEEEcCCHH----HHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeE
Confidence 4666666543 23345555555542 366789999999999888886444433 345788888887432
Q ss_pred cccCCCCc-cccccccCCcccccccc-chHHHH
Q 046320 137 MLFGEWTP-ESARMYGGVSLDSFLKY-VTVQSL 167 (198)
Q Consensus 137 iFlG~~tp-~aAR~~sgLsv~~FlK~-~s~~~~ 167 (198)
|++..+.. ...+..-..++.+|+.+ .+..++
T Consensus 98 i~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l 130 (150)
T 4e7p_A 98 VVVTTFKRAGYFERAVKAGVDAYVLKERSIADL 130 (150)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHH
T ss_pred EEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHH
Confidence 33333222 12222223446666544 455554
No 59
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=56.06 E-value=13 Score=27.13 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHHHHHhhCC------c-----eEEEeCCHHHHHHHHhhhcC
Q 046320 83 EEIRMQCQSLP------N-----FMVFAREIMRAITFSNLYAP 114 (198)
Q Consensus 83 ~~i~~~l~~l~------g-----~iv~v~~l~eai~~~N~~AP 114 (198)
++++..|+.+| | .-+.++|..+|++|.|.+|-
T Consensus 9 ~ei~~~L~~l~gW~~~~~~~~l~r~f~f~~f~~a~~f~~~Va~ 51 (97)
T 3jst_A 9 SEMNEALRALDGWQKVDGREAITRSFKFKDFSTAFGFMAQAAL 51 (97)
T ss_dssp HHHHHHHHTSTTCEECTTSSCEEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCeEeCCCCeEEEEEEeCCHHHHHHHHHHHHH
Confidence 45667777777 2 35668999999999999884
No 60
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=54.83 E-value=48 Score=22.97 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=51.7
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHh--hhcCcceeecc----cChHHHHhccchhc----c
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSN--LYAPEHLIVSA----KDTEKWESIIENAG----S 136 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N--~~APEHL~l~~----~d~~~~l~~I~nAG----s 136 (198)
-|||..+.....+. +.+.|+...-.+..+.+.++|++... ...|.=+.+-. .+..+++++++..+ -
T Consensus 5 ~ilivdd~~~~~~~----l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 5 KILVIDDESTILQN----IKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp EEEEECSCHHHHHH----HHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred EEEEEcCCHHHHHH----HHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeE
Confidence 35555554332243 44444444445777889999999887 55665443332 34578888888653 2
Q ss_pred cccCCCCcc-ccccccCCcccccccc-chHHHH
Q 046320 137 MLFGEWTPE-SARMYGGVSLDSFLKY-VTVQSL 167 (198)
Q Consensus 137 iFlG~~tp~-aAR~~sgLsv~~FlK~-~s~~~~ 167 (198)
|++..+... .....-..++.+|+.+ .+..++
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l 113 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLRKPVTAQDL 113 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEeCCCCHHHH
Confidence 344332222 1222223346666544 455555
No 61
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=51.65 E-value=19 Score=32.96 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=35.9
Q ss_pred eEEEeCCHHHHHHHHhhhc-CcceeecccChH---HHHhccchhcccccCCCC
Q 046320 95 FMVFAREIMRAITFSNLYA-PEHLIVSAKDTE---KWESIIENAGSMLFGEWT 143 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~---~~l~~I~nAGsiFlG~~t 143 (198)
.++.++|++||++++|..- +--..|.++|.. .+.+++ .+|.|++..++
T Consensus 424 ~v~~~~~~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l-~aG~v~iN~~~ 475 (516)
T 1uzb_A 424 SVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREF-HVGNLYFNRKI 475 (516)
T ss_dssp EEEEESSHHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHS-CCSEEEESSCS
T ss_pred EEEEeCCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhC-CEeEEEEeCCC
Confidence 4667899999999999962 224567788875 456666 69999999643
No 62
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=50.57 E-value=32 Score=23.52 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=49.6
Q ss_pred EEEecCchHhHHHHHHHHHHHHhhCCceEE-EeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhc----ccc
Q 046320 68 VLVIVGDGVDIKAIEEEIRMQCQSLPNFMV-FAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAG----SML 138 (198)
Q Consensus 68 vLvt~~~~l~~~~V~~~i~~~l~~l~g~iv-~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAG----siF 138 (198)
|||..+.....+ .+.+.|+...-.++ .+.+.+++++......|.=+.+-. .+..+++++++..+ -|+
T Consensus 4 ilivdd~~~~~~----~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 4 AIIIDDHPLAIA----AIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEECCCHHHHH----HHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEcCCHHHHH----HHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 455555433223 34444444432344 578889999988888886444433 34578888888643 233
Q ss_pred cCCCCc-cccccccCCcccccccc-chHHHH
Q 046320 139 FGEWTP-ESARMYGGVSLDSFLKY-VTVQSL 167 (198)
Q Consensus 139 lG~~tp-~aAR~~sgLsv~~FlK~-~s~~~~ 167 (198)
+..+.. ...+..-..++.+|+.+ .+..++
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l 110 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNI 110 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHH
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHH
Confidence 332222 12222223446666544 444444
No 63
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=49.16 E-value=36 Score=27.06 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=49.6
Q ss_pred CCceEEEecCchHhHHHHHHHHHHHHhhCC-ceEEEeCCHHHHHHHHhh--hcCcceeecccChHHHHhccc
Q 046320 64 DSQGVLVIVGDGVDIKAIEEEIRMQCQSLP-NFMVFAREIMRAITFSNL--YAPEHLIVSAKDTEKWESIIE 132 (198)
Q Consensus 64 ~a~avLvt~~~~l~~~~V~~~i~~~l~~l~-g~iv~v~~l~eai~~~N~--~APEHL~l~~~d~~~~l~~I~ 132 (198)
.+..|+|.+|+-- -+.+++.+.++. .| |.-+.+-+.++|++..|. |.-+.+-|.+++|...+.-+.
T Consensus 26 ~~~~IiVvnD~vA-~D~~~k~~lk~a--~P~gvk~~i~sve~ai~~~~~~~~~~~~v~ll~k~p~d~~~lve 94 (164)
T 1nrz_A 26 NAQRIIICNDDVF-NDEVRRTLLRQA--APPGMKVNVVSLEKAVAVYHNPQYQDETVFYLFTNPHDVLTMVR 94 (164)
T ss_dssp TCSEEEEECHHHH-TCHHHHHHHHHT--CCTTCEEEEECHHHHHHHHTCGGGTTCEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEeCcccc-CCHHHHHHHHhc--CCCCCeEEEEEHHHHHHHHhcccCCCceEEEEECCHHHHHHHHH
Confidence 3457777766644 377777776653 45 666777899999999987 677899999999998887763
No 64
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=48.89 E-value=33 Score=27.24 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=49.0
Q ss_pred CCceEEEecCchHhHHHHHHHHHHHHhhCC-ceEEEeCCHHHHHHHHhh--hcCcceeecccChHHHHhccc
Q 046320 64 DSQGVLVIVGDGVDIKAIEEEIRMQCQSLP-NFMVFAREIMRAITFSNL--YAPEHLIVSAKDTEKWESIIE 132 (198)
Q Consensus 64 ~a~avLvt~~~~l~~~~V~~~i~~~l~~l~-g~iv~v~~l~eai~~~N~--~APEHL~l~~~d~~~~l~~I~ 132 (198)
.+..|+|.+|+-- -+.+++.+.++. .| |.-+.+-+.++|++..|. |.-+.+-|.+++|...+.-+.
T Consensus 27 ~~~~IiVvnD~vA-~D~~~k~~lk~a--~P~gvk~~i~sve~ai~~~~~~~~~~~~v~ll~k~p~d~~~lve 95 (163)
T 1ble_A 27 AADRIIVVSDDIA-QDEMRKTLILSV--APSNVKASAVSVSKMAKAFHSPRYEGVTAMLLFENPSDIVSLIE 95 (163)
T ss_dssp TCSEEEEECHHHH-HCHHHHHHHHTS--SCTTSEEEEECHHHHHHHHHCSTTTTCEEEEEESSSHHHHHHHT
T ss_pred CCCEEEEeCcccc-CCHHHHHHHHhh--CCCCCeEEEEEHHHHHHHHhcccCCCceEEEEECCHHHHHHHHH
Confidence 3457777766543 466776666543 34 767777899999999987 677899999999998887764
No 65
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=48.14 E-value=18 Score=26.60 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=40.3
Q ss_pred HHHHHHhhCC------c-----eEEEeCCHHHHHHHHhhhcCcceeecccChHHHHhccchhcccccCCCCccc---ccc
Q 046320 84 EIRMQCQSLP------N-----FMVFAREIMRAITFSNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPES---ARM 149 (198)
Q Consensus 84 ~i~~~l~~l~------g-----~iv~v~~l~eai~~~N~~APEHL~l~~~d~~~~l~~I~nAGsiFlG~~tp~a---AR~ 149 (198)
+++.+|..+| + .-+.++|..+|++|.|.+| .+.++..|.=.++++...-.. ..-
T Consensus 13 ei~~~L~~l~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va------------~~Ae~~~HHPdi~~~y~~V~v~l~THd 80 (104)
T 2v6u_A 13 RLLQLHKTVPQWHLTDGHLSIKRKFQFSDFNEAWGFMSRVA------------LYADKVDHHPNWYNVYNTVDVELSTHD 80 (104)
T ss_dssp HHHHHHTTSTTSEECGGGCCEEEEEECSSHHHHHHHHHHHH------------HHHHHHTCCCEEEEETTEEEEEECBGG
T ss_pred HHHHHhhcCCCCeEeCCcCeEEEEEEeCCHHHHHHHHHHHH------------HHHHHhCCCCcEEEeCCEEEEEEEeCC
Confidence 5666777777 3 3556889999999999987 344444444444544322111 333
Q ss_pred ccCCcccccc
Q 046320 150 YGGVSLDSFL 159 (198)
Q Consensus 150 ~sgLsv~~Fl 159 (198)
.+|||-.||.
T Consensus 81 ~gGlT~~D~~ 90 (104)
T 2v6u_A 81 AAGLTEKDFA 90 (104)
T ss_dssp GTBCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 4688887774
No 66
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=47.38 E-value=21 Score=26.15 Aligned_cols=65 Identities=11% Similarity=-0.002 Sum_probs=41.0
Q ss_pred HHHHHHHhhCC------c----eEEEeCCHHHHHHHHhhhcCcceeecccChHHHHhccchhcccccCCCCccc---ccc
Q 046320 83 EEIRMQCQSLP------N----FMVFAREIMRAITFSNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPES---ARM 149 (198)
Q Consensus 83 ~~i~~~l~~l~------g----~iv~v~~l~eai~~~N~~APEHL~l~~~d~~~~l~~I~nAGsiFlG~~tp~a---AR~ 149 (198)
+++..+|+.+| | ..+.++|..+|++|.|.+| .+.++..|.=.++++...-.. ..-
T Consensus 6 ~ei~~~L~~l~gW~~~~~~~i~r~f~F~~f~~a~~F~~~Va------------~~Ae~~~HHPdi~~~y~~V~v~l~THd 73 (101)
T 2ebb_A 6 EEVQALLEKADGWKLADERWIVKKYRFQDYLQGIEFVRRIA------------AISENANHHPFISIDYKLITVKLSSWR 73 (101)
T ss_dssp HHHHHHHHTSTTCEEETTTEEEEEEECSSHHHHHHHHHHHH------------HHHHHTTCCCEEEEETTEEEEEECBTT
T ss_pred HHHHHHhhcCCCCeECCCCCEEEEEEeCCHHHHHHHHHHHH------------HHHHHhCCCCcEEEeCCEEEEEEEeCC
Confidence 45677777888 3 3566899999999999987 344444444444444222111 333
Q ss_pred ccCCcccccc
Q 046320 150 YGGVSLDSFL 159 (198)
Q Consensus 150 ~sgLsv~~Fl 159 (198)
.+||+-.||.
T Consensus 74 ~gGlt~~D~~ 83 (101)
T 2ebb_A 74 AKGLTKLDFD 83 (101)
T ss_dssp TTBCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 4688888874
No 67
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=47.34 E-value=64 Score=21.89 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=54.5
Q ss_pred ceEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhc------
Q 046320 66 QGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAG------ 135 (198)
Q Consensus 66 ~avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAG------ 135 (198)
.-|||..+.....+ .+...|+ ....+..+.+.++|++.....-|.=+.+-. .+..+++.+++..+
T Consensus 5 ~~ilivdd~~~~~~----~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 5 PKVLIVENSWTMRE----TLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp CEEEEECSCHHHHH----HHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CEEEEEcCCHHHHH----HHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 34666666543223 3344454 223477889999999999888776444332 35578888888743
Q ss_pred ccccCCCCccccccccCCcccccc-ccchHHHH
Q 046320 136 SMLFGEWTPESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 136 siFlG~~tp~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
-|++..+........-..++.+|+ |..+..++
T Consensus 80 ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l 112 (133)
T 3nhm_A 80 VIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVL 112 (133)
T ss_dssp EEEEESCCC-----TTSCCCSEEEESSCCHHHH
T ss_pred EEEEeCCCcHhHHHHhhcCCceEEeccCCHHHH
Confidence 245544433222333344566666 55566655
No 68
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=46.29 E-value=40 Score=26.77 Aligned_cols=66 Identities=15% Similarity=0.309 Sum_probs=49.5
Q ss_pred CCceEEEecCchHhHHHHHHHHHHHHhhCC-ceEEEeCCHHHHHHHHhh--hcCcceeecccChHHHHhccc
Q 046320 64 DSQGVLVIVGDGVDIKAIEEEIRMQCQSLP-NFMVFAREIMRAITFSNL--YAPEHLIVSAKDTEKWESIIE 132 (198)
Q Consensus 64 ~a~avLvt~~~~l~~~~V~~~i~~~l~~l~-g~iv~v~~l~eai~~~N~--~APEHL~l~~~d~~~~l~~I~ 132 (198)
.+..|+|.+|+-- -+.+++.+.++. .| |.-+.+-+.++|++..|. |.-+.+-|.+++|...+.-+.
T Consensus 29 ~~~~IiVvnD~vA-~D~~~k~~lk~a--~P~gvk~~i~sve~ai~~~~~~~~~~~~v~ll~k~p~d~~~lve 97 (165)
T 1vsq_C 29 NVSRIIVVSDEVA-ADTVRKTLLTQV--APPGVTAHVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERLVE 97 (165)
T ss_dssp TCSEEEEECHHHH-TCHHHHHHHHHT--CCTTCEEEEECHHHHHHHHTCGGGTTCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCcccc-CCHHHHHHHHhc--CCCCCeEEEEEHHHHHHHHhccccCCcEEEEEECCHHHHHHHHH
Confidence 4557777766644 377777776643 35 666777899999999986 677899999999998887763
No 69
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=43.71 E-value=78 Score=21.88 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=54.2
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchh------cc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENA------GS 136 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nA------Gs 136 (198)
-|||..+.....+. +.+.|+...-.++.+.+.+++++......|.=+.+-. .+-.+++++++.. --
T Consensus 5 ~ILivdd~~~~~~~----l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 5 TILVVDDSPMIVDV----FVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp EEEEECSCHHHHHH----HHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred eEEEEeCCHHHHHH----HHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 35666555432233 3344444323366788999999998887775443332 2456788888753 23
Q ss_pred cccCCCCccc-cccccCCcccccc-ccchHHHH
Q 046320 137 MLFGEWTPES-ARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 137 iFlG~~tp~a-AR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
|++..+.... .....|.++.+|+ |..+..++
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L 113 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQL 113 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHH
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHH
Confidence 4444332222 2233466677775 45666655
No 70
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=42.53 E-value=80 Score=21.65 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=52.9
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccch--hc----c
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIEN--AG----S 136 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~n--AG----s 136 (198)
.|||..+.....+.+...+ +...-.+..+.+.+++++......|.=+.+-. .+..+++++++. .. -
T Consensus 9 ~iLivdd~~~~~~~l~~~L----~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pi 84 (142)
T 3cg4_A 9 DVMIVDDDAHVRIAVKTIL----SDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAI 84 (142)
T ss_dssp EEEEECSCHHHHHHHHHHH----HHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEE
T ss_pred eEEEEcCCHHHHHHHHHHH----HHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCE
Confidence 4555555433224444444 33322367789999999999887775444332 245678888876 22 2
Q ss_pred cccCCCC-ccccccccCCcccccc-ccchHHHH
Q 046320 137 MLFGEWT-PESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 137 iFlG~~t-p~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
|++.... +......-..++.+|+ |..+..++
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l 117 (142)
T 3cg4_A 85 VMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDL 117 (142)
T ss_dssp EEEECTTCCCCSSTTGGGGEEEEEESSCCHHHH
T ss_pred EEEECCCCHHHHHHHHhcCccEEEeCCCCHHHH
Confidence 4444332 2222223344566765 44556555
No 71
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=42.40 E-value=77 Score=21.43 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=39.6
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG 135 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG 135 (198)
-|||..+... ..+.+.+.|+...-.+..+.|.++|++......|.=+.+-.. +..+++++++..+
T Consensus 9 ~ilivdd~~~----~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (130)
T 3eod_A 9 QILIVEDEQV----FRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRG 77 (130)
T ss_dssp EEEEECSCHH----HHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTT
T ss_pred eEEEEeCCHH----HHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 4555555433 223344445555445677889999999998877754433332 4467888888753
No 72
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=40.36 E-value=52 Score=24.48 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=50.2
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc----ccc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG----SML 138 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG----siF 138 (198)
-|||..|.... .+.+...|+...-.+..+.|.++|++.....-|.=+.+-.. |-.+++.+++..+ -|+
T Consensus 9 ~iLivdd~~~~----~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 9 NFLVIDDNEVF----AGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp EEEEECSCHHH----HHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEE
T ss_pred eEEEEcCCHHH----HHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEE
Confidence 46666665432 22334444443234666788888888887777754443332 3467777777633 233
Q ss_pred cCCCCcc-ccccccCCcccccc-ccchHHHH
Q 046320 139 FGEWTPE-SARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 139 lG~~tp~-aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
+..+... ..+..-..++.+|+ |..+..++
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L 115 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESI 115 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHH
Confidence 3332222 12222233455654 44455554
No 73
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=40.29 E-value=1e+02 Score=24.06 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=55.5
Q ss_pred ceEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc----cc
Q 046320 66 QGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG----SM 137 (198)
Q Consensus 66 ~avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG----si 137 (198)
.-|||..|.....+. +...|+...-.+..+.|.++|++.....-|.=+.+-.. |-.+++.+++..+ -|
T Consensus 24 ~~ILivdd~~~~~~~----l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 24 ARVLVVDDEANIVEL----LSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp CEEEEECSCHHHHHH----HHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred ceEEEEECCHHHHHH----HHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 356666665442243 33444443224667889999999998888865544433 4578888888653 24
Q ss_pred ccCCCCccc-cccccCCcccccc-ccchHHHH
Q 046320 138 LFGEWTPES-ARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 138 FlG~~tp~a-AR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
++..+.... ....-..++.+|+ |..+..++
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L 131 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVTKPFSLEEV 131 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEESSCCHHHH
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHH
Confidence 444333222 2222334566765 44556555
No 74
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=39.69 E-value=79 Score=20.81 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=48.7
Q ss_pred EEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhc----cccc
Q 046320 68 VLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAG----SMLF 139 (198)
Q Consensus 68 vLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAG----siFl 139 (198)
+||..+.....+.+. +.|+...-.+..+.+.+++++.....-|.=+.+-. .+..+++++++... -|++
T Consensus 4 ilivdd~~~~~~~l~----~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 4 ILVVDDEPNIRELLK----EELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp EEEECSCHHHHHHHH----HHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHH----HHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 455555433224333 33443323466788899999888776665333322 24567788877542 3445
Q ss_pred CCCCccccccccCCccccccc-cchHHHH
Q 046320 140 GEWTPESARMYGGVSLDSFLK-YVTVQSL 167 (198)
Q Consensus 140 G~~tp~aAR~~sgLsv~~FlK-~~s~~~~ 167 (198)
..+.... ...-..++.+|+. ..+..++
T Consensus 80 s~~~~~~-~~~~~~g~~~~l~Kp~~~~~l 107 (116)
T 3a10_A 80 TAYSHYR-SDMSSWAADEYVVKSFNFDEL 107 (116)
T ss_dssp ESCGGGG-GCGGGGGSSEEEECCSSTHHH
T ss_pred ECCcchH-HHHHhccccceEECCCCHHHH
Confidence 4433222 2222345566654 3444443
No 75
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=38.98 E-value=87 Score=21.05 Aligned_cols=64 Identities=5% Similarity=-0.043 Sum_probs=40.4
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchh
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENA 134 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nA 134 (198)
-|||..+.....+ .+.+.|+...-.+..+.+.++|++......|.=+.+-. .+..+++++++..
T Consensus 5 ~ilivdd~~~~~~----~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 5 QALIVEDYQAAAE----TFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp EEEEECSCHHHHH----HHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred eEEEEcCCHHHHH----HHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4566655533223 34444444433467789999999999888886554433 3457888888865
No 76
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=38.80 E-value=94 Score=21.75 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=47.8
Q ss_pred EEEecCchHhHHHHHHHHHHHHhhCCce--EEEeCCHHHHHHHHhh-hcCcceeeccc----ChHHHHhccchhc----c
Q 046320 68 VLVIVGDGVDIKAIEEEIRMQCQSLPNF--MVFAREIMRAITFSNL-YAPEHLIVSAK----DTEKWESIIENAG----S 136 (198)
Q Consensus 68 vLvt~~~~l~~~~V~~~i~~~l~~l~g~--iv~v~~l~eai~~~N~-~APEHL~l~~~----d~~~~l~~I~nAG----s 136 (198)
|||..+.....+ .+.+.|+..+|. +..+.+.+++++.... ..|.=+.+-.. +..+++.+++... -
T Consensus 6 iLivdd~~~~~~----~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 6 VLIVDDHHLIRA----GAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp EEEECSCHHHHH----HHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEE
T ss_pred EEEEcCCHHHHH----HHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeE
Confidence 455544433223 344444444333 5568899999998887 66654444332 3356777877642 2
Q ss_pred cccCCCCc-cccccccCCccccccc-cchHHHH
Q 046320 137 MLFGEWTP-ESARMYGGVSLDSFLK-YVTVQSL 167 (198)
Q Consensus 137 iFlG~~tp-~aAR~~sgLsv~~FlK-~~s~~~~ 167 (198)
|++..... ...+..-..++.+|+. ..+..++
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L 114 (154)
T 2qsj_A 82 ALISGETDHELIRAALEAGADGFIPKSADPQVL 114 (154)
T ss_dssp EEC-----CHHHHHHHHTTCCBBCCTTSCHHHH
T ss_pred EEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHH
Confidence 34433222 1122222345666654 4455555
No 77
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=37.07 E-value=48 Score=27.07 Aligned_cols=67 Identities=10% Similarity=0.155 Sum_probs=49.0
Q ss_pred CCceEEEecCchHhHHHHHHHHHHHHhhCC-ceEEEeCCHHHHHHHHhh--hcCcceeecccChHHHHhccch
Q 046320 64 DSQGVLVIVGDGVDIKAIEEEIRMQCQSLP-NFMVFAREIMRAITFSNL--YAPEHLIVSAKDTEKWESIIEN 133 (198)
Q Consensus 64 ~a~avLvt~~~~l~~~~V~~~i~~~l~~l~-g~iv~v~~l~eai~~~N~--~APEHL~l~~~d~~~~l~~I~n 133 (198)
.+..|+|.+|+-- -+.+++.+.++ ..| |.-+.+-+.++|++..|. |.-+.+-|.+++|...++-+++
T Consensus 47 ~~~~IiVvnD~vA-~D~~~k~~lkm--A~P~gvk~~i~sve~ai~~~~~~~~~~~~v~il~k~p~d~~~lve~ 116 (187)
T 3lfj_A 47 PEASIVIIDDELA-VDEFMKNIYTM--AAPPGVKVKVFGVDAALKEWSQKTSVEEKVFLLFKNIDTCKRVMDG 116 (187)
T ss_dssp TTCEEEEECHHHH-HCHHHHHHHHH--TSCTTCCEEEECHHHHHHHHHSBCSSCEEEEEEESSHHHHHHHHHT
T ss_pred CCCEEEEECcccc-CCHHHHHHHHH--hccCCCeEEEEEHHHHHHHHhCCccCCceEEEEECCHHHHHHHHHc
Confidence 4557887766643 47777777664 335 666667799999998876 4557899999999988876654
No 78
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=36.98 E-value=25 Score=25.92 Aligned_cols=53 Identities=9% Similarity=-0.033 Sum_probs=32.5
Q ss_pred eEEEeCCHHHHHHHHhhhcCcceeecccChHHHHhccchhcccccCCCCccc---cccccCCcccccc
Q 046320 95 FMVFAREIMRAITFSNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPES---ARMYGGVSLDSFL 159 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~APEHL~l~~~d~~~~l~~I~nAGsiFlG~~tp~a---AR~~sgLsv~~Fl 159 (198)
..+.++|..+|++|.|.+|- +.++..|-=.++++...-.. -.-.+||+-.||-
T Consensus 38 r~f~F~~f~~a~~F~~~Va~------------~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlt~~D~~ 93 (105)
T 1ru0_A 38 KEFSFKNFNQAFGFMSRVAL------------QAEKMNHHPEWFNVYNKVQITLTSHDCGGLTKRDVK 93 (105)
T ss_dssp EEEECSSHHHHHHHHHHHHH------------HHHHHTCCCEEEEETTEEEEEECBTTTTBCBHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH------------HHHHhCCCCcEEEeCCEEEEEEEeCCCCCCCHHHHH
Confidence 35668999999999999983 44444444444444322111 2334678877763
No 79
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=36.76 E-value=1e+02 Score=21.22 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=54.0
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchh--------
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENA-------- 134 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nA-------- 134 (198)
-|||..+... ..+.+...|+...-.+..+.+.+++++......|.=+.+-. .|-.+++++++..
T Consensus 12 ~iLivdd~~~----~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 12 SVLIAEDNDI----CRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp EEEEECCCHH----HHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred eEEEEcCCHH----HHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 4666666543 23344455555433467788999999988877775433322 2456788888753
Q ss_pred -cccccCCCCccccccccCCcccccc-ccchHHHH
Q 046320 135 -GSMLFGEWTPESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 135 -GsiFlG~~tp~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
--+++........+. +.++.+|+ |..+..++
T Consensus 88 ~~ii~~s~~~~~~~~~--~~g~~~~l~KP~~~~~L 120 (140)
T 3c97_A 88 ASIIAITADTIDDDRP--GAELDEYVSKPLNPNQL 120 (140)
T ss_dssp CCCEEEESSCCSCCCC--CSSCSEEEESSCCHHHH
T ss_pred eEEEEEeCccchhHHH--hCChhheEeCCCCHHHH
Confidence 123444332222222 45566775 55566666
No 80
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=36.08 E-value=1.1e+02 Score=21.57 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=55.3
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc------c
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG------S 136 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG------s 136 (198)
-|||..+.... .+.+.+.|+...-.+..+.|.++|++.....-|.=+.+-.. +..+++++++..+ -
T Consensus 9 ~ILivdd~~~~----~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 9 EILIVEDSPTQ----AEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp EEEEECSCHHH----HHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cEEEEeCCHHH----HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 46666665432 23344445544334677889999999998887765544433 4578888888653 2
Q ss_pred cccCCCC-ccccccccCCcccccc-ccchHHHH
Q 046320 137 MLFGEWT-PESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 137 iFlG~~t-p~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
|++..+. +......-..++.+|+ |..+..++
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l 117 (154)
T 3gt7_A 85 ILLTILSDPRDVVRSLECGADDFITKPCKDVVL 117 (154)
T ss_dssp EEEECCCSHHHHHHHHHHCCSEEEESSCCHHHH
T ss_pred EEEECCCChHHHHHHHHCCCCEEEeCCCCHHHH
Confidence 4444332 2222222233456665 44566555
No 81
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=35.35 E-value=23 Score=26.14 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=31.7
Q ss_pred eEEEeCCHHHHHHHHhhhcCcceeecccChHHHHhccchhcccccCCCCccc---cccccCCccccc
Q 046320 95 FMVFAREIMRAITFSNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPES---ARMYGGVSLDSF 158 (198)
Q Consensus 95 ~iv~v~~l~eai~~~N~~APEHL~l~~~d~~~~l~~I~nAGsiFlG~~tp~a---AR~~sgLsv~~F 158 (198)
.-+.++|..+|++|.|.+|- +.++..|-=.++++...-.. ..-.+||+-.||
T Consensus 36 r~f~F~~f~~a~~F~~~Va~------------~AE~~~HHPdi~~~y~~V~v~l~THd~gGlT~~D~ 90 (104)
T 3hxa_A 36 KQFHFKDFNRAFGFMSRVAL------------QAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDI 90 (104)
T ss_dssp EEEECSSHHHHHHHHHHHHH------------HHHHHTCCCEEEEETTEEEEEECBTTTTBCCHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH------------HHHHhCCCCeEEEeCCEEEEEEEeCCCCCCCHHHH
Confidence 35678999999999999873 33444444444444221111 333468888777
No 82
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=35.33 E-value=1.1e+02 Score=21.00 Aligned_cols=96 Identities=11% Similarity=0.198 Sum_probs=51.3
Q ss_pred EEEecCchHhHHHHHHHHHHHHhhCCc--eEEEeCCHHHHHHHHhh------hcCcceeecc----cChHHHHhccchhc
Q 046320 68 VLVIVGDGVDIKAIEEEIRMQCQSLPN--FMVFAREIMRAITFSNL------YAPEHLIVSA----KDTEKWESIIENAG 135 (198)
Q Consensus 68 vLvt~~~~l~~~~V~~~i~~~l~~l~g--~iv~v~~l~eai~~~N~------~APEHL~l~~----~d~~~~l~~I~nAG 135 (198)
|||..+.....+.+...+.+ ... .+..+.+.+++++.... ..|.=+.+-. .+..+++++++...
T Consensus 10 ILivdd~~~~~~~l~~~L~~----~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 10 ILYLEDDEVDIQSVERVFHK----ISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp EEEECCCHHHHHHHHHHHHH----HCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred EEEEeCCHHHHHHHHHHHHH----hCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 45554443322444444433 222 47788999999998876 4554433332 24567888887653
Q ss_pred ------ccccCCCC-ccccccccCCcccccc-ccchHHHH
Q 046320 136 ------SMLFGEWT-PESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 136 ------siFlG~~t-p~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
-|++.... +......-..++.+|+ |..+..++
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L 125 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEA 125 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHH
Confidence 23443332 2223333345566765 45555555
No 83
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=34.96 E-value=1.1e+02 Score=21.07 Aligned_cols=63 Identities=11% Similarity=-0.039 Sum_probs=39.8
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhh-CCceEEEeCCHHHHHHHHhh-hcCcceeecccCh-----HHHHhccch
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQS-LPNFMVFAREIMRAITFSNL-YAPEHLIVSAKDT-----EKWESIIEN 133 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~-l~g~iv~v~~l~eai~~~N~-~APEHL~l~~~d~-----~~~l~~I~n 133 (198)
-|||..+.....+. +...|+. ..-.++.+.|.++|++.... ..|.=+.+-..-| .+++.+++.
T Consensus 6 ~ilivdd~~~~~~~----l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 6 TVLLIDYFEYEREK----TKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp EEEEECSCHHHHHH----HHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHH----HHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 46666555432233 4444444 32246788999999999988 7787655554433 577888776
No 84
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=34.06 E-value=1.1e+02 Score=20.87 Aligned_cols=98 Identities=9% Similarity=0.028 Sum_probs=55.2
Q ss_pred ceEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchh------c
Q 046320 66 QGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENA------G 135 (198)
Q Consensus 66 ~avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nA------G 135 (198)
.-|||..+.....+.+. +.|+...-.+..+.|.++|++.....-|.=+.+-. .+..+++.+++.. -
T Consensus 7 ~~iLivdd~~~~~~~l~----~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 7 PRILICEDDPDIARLLN----LMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp SEEEEECSCHHHHHHHH----HHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCEEEEcCCHHHHHHHH----HHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 34566655543224333 44444333477789999999999888776444433 3457888888862 2
Q ss_pred ccccCCCCccc-cc-cccCCcccccc-ccchHHHH
Q 046320 136 SMLFGEWTPES-AR-MYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 136 siFlG~~tp~a-AR-~~sgLsv~~Fl-K~~s~~~~ 167 (198)
-|++..+.... .. ..-..++.+|+ |..+..++
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l 117 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLL 117 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHH
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHH
Confidence 23444332221 22 34455677765 44556555
No 85
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=33.98 E-value=1.2e+02 Score=21.25 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=55.2
Q ss_pred ceEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhc----cc
Q 046320 66 QGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAG----SM 137 (198)
Q Consensus 66 ~avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAG----si 137 (198)
.-|||..+... ..+.+.+.|+...-.+..+.|.++|++.....-|.=+.+-. .+..+++.+++..+ -|
T Consensus 15 ~~ILivdd~~~----~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 90 (153)
T 3hv2_A 15 PEILLVDSQEV----ILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRI 90 (153)
T ss_dssp CEEEEECSCHH----HHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred ceEEEECCCHH----HHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEE
Confidence 35666666543 23344555555533466788999999999888776544433 34578888887642 23
Q ss_pred ccCCCCccc-cccccCCc-ccccc-ccchHHHH
Q 046320 138 LFGEWTPES-ARMYGGVS-LDSFL-KYVTVQSL 167 (198)
Q Consensus 138 FlG~~tp~a-AR~~sgLs-v~~Fl-K~~s~~~~ 167 (198)
++..+.... ....-..+ +.+|+ |..+..++
T Consensus 91 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l 123 (153)
T 3hv2_A 91 LLTGDPDLKLIAKAINEGEIYRYLSKPWDDQEL 123 (153)
T ss_dssp EECCCCCHHHHHHHHHTTCCSEEECSSCCHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcceEEeCCCCHHHH
Confidence 444332222 22222233 55555 55566655
No 86
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=33.97 E-value=1.2e+02 Score=20.99 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=55.5
Q ss_pred ceEEEecCchHhHHHHHHHHHHHHhhCCce--EEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc----
Q 046320 66 QGVLVIVGDGVDIKAIEEEIRMQCQSLPNF--MVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG---- 135 (198)
Q Consensus 66 ~avLvt~~~~l~~~~V~~~i~~~l~~l~g~--iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG---- 135 (198)
.-|||..+... ..+.+.+.|+..... +..+.+.++|++......|.=+.+-.. +..+++.+++..+
T Consensus 6 ~~ILivdd~~~----~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 6 KRVLVVEDNPD----DIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp EEEEEECCCHH----HHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CEEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 35666666543 233444555555433 677899999999998887764444333 4567888888622
Q ss_pred --ccccCCC-CccccccccCCccccccccc--hHHHH
Q 046320 136 --SMLFGEW-TPESARMYGGVSLDSFLKYV--TVQSL 167 (198)
Q Consensus 136 --siFlG~~-tp~aAR~~sgLsv~~FlK~~--s~~~~ 167 (198)
-|++..+ ++...+..-..++.+|+.+- +..++
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l 118 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDF 118 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHH
Confidence 2333332 22222222234567776543 45555
No 87
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=32.75 E-value=1.1e+02 Score=20.23 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=49.8
Q ss_pred EEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhc----cccc
Q 046320 68 VLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAG----SMLF 139 (198)
Q Consensus 68 vLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAG----siFl 139 (198)
+||..+.....+.+. +.|+...-.+..+.+.+++++.....-|.=+.+-. .+..+++++++..+ -|++
T Consensus 3 ilivdd~~~~~~~l~----~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 3 VLVVEDNALLRHHLK----VQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp EEEECSCHHHHHHHH----HHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred EEEEeCcHHHHHHHH----HHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 445444433224333 33433322366788899999888877674333322 24467777777533 2444
Q ss_pred CCCCccc-cccccCCcccccc-ccchHHHH
Q 046320 140 GEWTPES-ARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 140 G~~tp~a-AR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
..+.... ....-..++.+|+ |..+..++
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l 108 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEV 108 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHH
Confidence 4332221 2222234566665 55666655
No 88
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=31.66 E-value=48 Score=22.46 Aligned_cols=96 Identities=10% Similarity=0.096 Sum_probs=54.4
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc----ccc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG----SML 138 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG----siF 138 (198)
-|||..+... ..+.+.+.|+..-..+..+.+.+++.+..... |.=+.+-.. +..+++++++..+ -|+
T Consensus 5 ~ilivdd~~~----~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 5 RVFIVDDDTL----TCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp EEEEECSCHH----HHHHHHHHHTTTCSCEEEESCHHHHTTSCCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEeCCHH----HHHHHHHHHHhhcceeeeecCHHHHHHhhccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 3555555433 23344455555522467788999998888777 754444333 3457777777643 344
Q ss_pred cCCCCcc------ccccccCCcccccc-ccchHHHH
Q 046320 139 FGEWTPE------SARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 139 lG~~tp~------aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
+..+... .....-+.++.+|+ |..+..++
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l 115 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVL 115 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHH
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHH
Confidence 4444432 13335567777776 44556555
No 89
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=31.35 E-value=1.3e+02 Score=20.75 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=53.0
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhh-hcCcceeecc-----cChHHHHhccchh---ccc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNL-YAPEHLIVSA-----KDTEKWESIIENA---GSM 137 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~-~APEHL~l~~-----~d~~~~l~~I~nA---Gsi 137 (198)
-|||..+.....+. +.+.|+...-.+..+.+.++|++.... ..|.=+.+-. .+..+++++++.. --|
T Consensus 7 ~ilivdd~~~~~~~----l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 7 KILIVEDSKFQAKT----IANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp EEEEECSCHHHHHH----HHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred EEEEEeCCHHHHHH----HHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 46666665432243 444444443346678899999998876 6675443322 3556788888763 223
Q ss_pred ccCCCC-ccccccccCCcccccc-ccchHHHH
Q 046320 138 LFGEWT-PESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 138 FlG~~t-p~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
++..+. +...+..-..++.+|+ |..+..++
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l 114 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVL 114 (140)
T ss_dssp EEESSSSCCCCGGGGGSCEEEEEETTCCHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcEEEeCCCCHHHH
Confidence 333322 2222223334577776 44556555
No 90
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=30.34 E-value=1.3e+02 Score=20.67 Aligned_cols=98 Identities=14% Similarity=0.043 Sum_probs=54.7
Q ss_pred ceEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc------
Q 046320 66 QGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG------ 135 (198)
Q Consensus 66 ~avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG------ 135 (198)
..|||..|.... .+.+...|+...-.+..+.|.++|++......|.=+.+-.. |-.+++++++...
T Consensus 5 ~~iLivdd~~~~----~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~p 80 (136)
T 3t6k_A 5 HTLLIVDDDDTV----AEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLP 80 (136)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCC
T ss_pred CEEEEEeCCHHH----HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCcc
Confidence 356777665442 23344444444334677889999999998888864444333 4578888887632
Q ss_pred ccccCCCCccc-cccccCCcccccc-ccchHHHH
Q 046320 136 SMLFGEWTPES-ARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 136 siFlG~~tp~a-AR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
-|++..+.... ....-..++.+|+ |..+..++
T Consensus 81 ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L 114 (136)
T 3t6k_A 81 ILMLTAQGDISAKIAGFEAGANDYLAKPFEPQEL 114 (136)
T ss_dssp EEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHH
Confidence 24444332222 1111223455655 55666665
No 91
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=30.26 E-value=1.1e+02 Score=25.03 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=15.7
Q ss_pred ceEEEeCCHHHHHHHHhhhcCcceeec
Q 046320 94 NFMVFAREIMRAITFSNLYAPEHLIVS 120 (198)
Q Consensus 94 g~iv~v~~l~eai~~~N~~APEHL~l~ 120 (198)
..+.+++|.+|+++....|.|.|-...
T Consensus 169 ~~~~~~d~~ee~~~~l~~~~~~~~~~~ 195 (216)
T 1ydh_A 169 NIVVSAPTAKELMEKMEEYTPSHMHVA 195 (216)
T ss_dssp TTEEEESSHHHHHHHHHHCC-------
T ss_pred CeEEEeCCHHHHHHHHHHhcccccccc
Confidence 457778888888888877777776543
No 92
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=30.05 E-value=1.3e+02 Score=20.38 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=53.0
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCce-EE-EeCCHHHHHHHHhhhcCcceeecc-----cChHHHHhccchh---cc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNF-MV-FAREIMRAITFSNLYAPEHLIVSA-----KDTEKWESIIENA---GS 136 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~-iv-~v~~l~eai~~~N~~APEHL~l~~-----~d~~~~l~~I~nA---Gs 136 (198)
-|||..+.....+.+...+.+ . |+ ++ .+.+.+++++......|.=+.+-. .+..+++.+++.. --
T Consensus 11 ~iLivdd~~~~~~~l~~~L~~----~-g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 11 GVLIVEDGRLAAATLRIQLES----L-GYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp EEEEECCBHHHHHHHHHHHHH----H-TCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred eEEEEECCHHHHHHHHHHHHH----C-CCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 455555554322544444443 2 43 45 489999999999888776544432 3456778888754 23
Q ss_pred cccCCCCccc-cccccCCcccccccc-chHHHH
Q 046320 137 MLFGEWTPES-ARMYGGVSLDSFLKY-VTVQSL 167 (198)
Q Consensus 137 iFlG~~tp~a-AR~~sgLsv~~FlK~-~s~~~~ 167 (198)
|++....... .+..-..++.+|+.+ .+..++
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l 118 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTL 118 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHH
Confidence 3443322221 223334566777644 455555
No 93
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=29.15 E-value=1.5e+02 Score=20.76 Aligned_cols=97 Identities=14% Similarity=-0.049 Sum_probs=51.3
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhc----ccc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAG----SML 138 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAG----siF 138 (198)
-|||..+.....+.+... |....-.+..+.+.+++++......|.=+.+-. .+..+++.+++..+ -|+
T Consensus 5 ~ILivdd~~~~~~~l~~~----L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 5 SVFLIDDDRDLRKAMQQT----LELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp EEEEECSCHHHHHHHHHH----HHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEE
T ss_pred EEEEEeCCHHHHHHHHHH----HHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 355554543322444443 433322367788999999988887775443332 24567788887643 233
Q ss_pred cCCCCccc-cccccCCcccccc-ccchHHHH
Q 046320 139 FGEWTPES-ARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 139 lG~~tp~a-AR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
+..+.... .+..-..++.+|+ |..+..++
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L 111 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEESSCCHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEeCCCCHHHH
Confidence 33322211 2222234566665 44566655
No 94
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=28.97 E-value=1.5e+02 Score=20.71 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=55.8
Q ss_pred CceEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchh------
Q 046320 65 SQGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENA------ 134 (198)
Q Consensus 65 a~avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nA------ 134 (198)
..-|||..|.... .+.+.+.|+...-.+..+.+.+++++......|.=+.+-.. |-.++++++|..
T Consensus 14 ~~~iLivdd~~~~----~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 14 SMRMLVADDHEAN----RMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp -CEEEEECSSHHH----HHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cceEEEEeCCHHH----HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 3457777776442 33444555544334667889999999988877765554433 456888888742
Q ss_pred --cccccCC-CCccccccccCCcccccc-ccchHHHH
Q 046320 135 --GSMLFGE-WTPESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 135 --GsiFlG~-~tp~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
--|++.. .+++..+..-..++.+|+ |..+..++
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L 126 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKL 126 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHH
Confidence 1233332 233332222234466665 66666666
No 95
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=28.46 E-value=1.7e+02 Score=21.62 Aligned_cols=97 Identities=12% Similarity=-0.024 Sum_probs=52.8
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhc----ccc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAG----SML 138 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAG----siF 138 (198)
-|||..|.... .+.+...|+...-.+..+.+.+++++......|.=+.+-. .|..+++.+++..+ -|+
T Consensus 6 ~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 6 TVFVVDDDMSV----REGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp EEEEECSCHHH----HHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEcCCHHH----HHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46666565432 2334444444323366788999999988777675433332 25568888887643 244
Q ss_pred cCCCCccc-cccccCCcccccc-ccchHHHH
Q 046320 139 FGEWTPES-ARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 139 lG~~tp~a-AR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
+..+.... ....-..++.+|+ |..+..++
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L 112 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQAL 112 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHH
Confidence 44333222 2222234566776 44555555
No 96
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=26.71 E-value=2.4e+02 Score=22.31 Aligned_cols=94 Identities=10% Similarity=0.035 Sum_probs=51.4
Q ss_pred EEEeCCCCCHHHHHHHHhh-----ccCCCCceEEEecCchHhHHHHHHHHHHHHhhCC-ceEEEeCC---HHHHHHHHhh
Q 046320 41 LVIADRYPSPLHVAADLLS-----QRGPDSQGVLVIVGDGVDIKAIEEEIRMQCQSLP-NFMVFARE---IMRAITFSNL 111 (198)
Q Consensus 41 lViAD~tAnp~~vAaDLLa-----QHdp~a~avLvt~~~~l~~~~V~~~i~~~l~~l~-g~iv~v~~---l~eai~~~N~ 111 (198)
+++...|.-....++=+.. +.....+++++++..+++ .++.+++.+...... ....++.+ .++...+.+
T Consensus 83 ~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~-~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 160 (249)
T 3ber_A 83 IIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELA-FQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK- 160 (249)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHH-HHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT-
T ss_pred EEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHH-HHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC-
Confidence 4455556666555433222 233345688899999995 999998888766543 22223332 122222211
Q ss_pred hcCcceeecccChHHHHhccchhcccccC
Q 046320 112 YAPEHLIVSAKDTEKWESIIENAGSMLFG 140 (198)
Q Consensus 112 ~APEHL~l~~~d~~~~l~~I~nAGsiFlG 140 (198)
.-.|.+..|..++..+++.+.+.+.
T Consensus 161 ----~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 161 ----KPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp ----CCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred ----CCCEEEECHHHHHHHHHcCCCcCcc
Confidence 2244555577887777665544433
No 97
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=26.68 E-value=1.5e+02 Score=19.90 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=38.8
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecccC----hHHHHhccch
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAKD----TEKWESIIEN 133 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~d----~~~~l~~I~n 133 (198)
-|||..|.....+. +...|+...-.+..+.|.++|++..+...|.=+.+-..- ..+++++++.
T Consensus 4 ~ilivdd~~~~~~~----l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~ 70 (120)
T 3f6p_A 4 KILVVDDEKPIADI----LEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRK 70 (120)
T ss_dssp EEEEECSCHHHHHH----HHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHH----HHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 45666555432233 334444443346678899999999988888655554433 3577777775
No 98
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=26.36 E-value=1.5e+02 Score=19.94 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=39.3
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceE-E-EeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccch
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFM-V-FAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIEN 133 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~i-v-~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~n 133 (198)
-|||..+... ..+.+.+.|...+|.- + .+.|.+++++......|.=+.+-. .+-.+++++++.
T Consensus 4 ~ilivdd~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~ 72 (130)
T 1dz3_A 4 KVCIADDNRE----LVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRA 72 (130)
T ss_dssp EEEEECSCHH----HHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred EEEEEcCCHH----HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHh
Confidence 3566656543 2334555566665553 3 578999999998887775433322 245678888876
No 99
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=26.25 E-value=1.5e+02 Score=19.95 Aligned_cols=97 Identities=8% Similarity=0.081 Sum_probs=50.9
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhc----ccc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAG----SML 138 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAG----siF 138 (198)
-|||..+.....+.+. ..|....-.+..+.+.+++++..+...|.=+.+-. .+..+++.+++..+ -|+
T Consensus 5 ~ilivdd~~~~~~~l~----~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 5 KILVVDDEESIVTLLQ----YNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp EEEEECSCHHHHHHHH----HHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEECCHHHHHHHH----HHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4555555433223333 33433322366788899999888877775433322 24567788887643 233
Q ss_pred cCCCC-ccccccccCCcccccc-ccchHHHH
Q 046320 139 FGEWT-PESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 139 lG~~t-p~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
+..+. +......-..++.+|+ |..+..++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l 111 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREV 111 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHH
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHH
Confidence 33222 2222222234456664 55666666
No 100
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=26.05 E-value=2.1e+02 Score=21.49 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=52.9
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc----ccc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG----SML 138 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG----siF 138 (198)
-|||..|.....+.+.. .|+...-.+..+.+.+++++......|.=+.+-.. +..+++.+++... -|+
T Consensus 9 ~ilivdd~~~~~~~l~~----~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 9 RVLVVDDDSDVLASLER----GLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp EEEEECSCHHHHHHHHH----HHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred eEEEEeCCHHHHHHHHH----HHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 45665555432244443 33333223667889999999888877764443332 4567888887543 344
Q ss_pred cCCCCccc-cccccCCcccccc-ccchHHHH
Q 046320 139 FGEWTPES-ARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 139 lG~~tp~a-AR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
+..+.... ....-..++.+|+ |..+..++
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L 115 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAEL 115 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHH
Confidence 44332222 2333345566665 44556555
No 101
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=25.99 E-value=91 Score=21.46 Aligned_cols=97 Identities=9% Similarity=-0.005 Sum_probs=53.0
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc------cChHHHHhccchhc----c
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA------KDTEKWESIIENAG----S 136 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~------~d~~~~l~~I~nAG----s 136 (198)
-|||..+... +.+.+.+.|+...-.+..+.|.++|++......|.=+.+-. .+..+++++++..+ -
T Consensus 8 ~ilivdd~~~----~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 8 IIYLVDHQKD----ARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp EEEEECSCHH----HHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred eEEEEcCCHH----HHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 4666655533 23344555555433466788999999888877775444332 34457888888653 2
Q ss_pred cccCCCCcc-ccccccCCcccccc-ccchHHHH
Q 046320 137 MLFGEWTPE-SARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 137 iFlG~~tp~-aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
|++..+... .....-..++.+|+ |..+..++
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 116 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKPFIEHVL 116 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHH
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHH
Confidence 333332222 12222234456665 44555555
No 102
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=25.73 E-value=2.1e+02 Score=22.11 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=35.8
Q ss_pred cCCcceEEEEeCCCCCHHHHH-----HHHhhc-cCCCCceEEEecCchHhHHHHHHHHHHHHhhCC
Q 046320 34 KVQTAQVLVIADRYPSPLHVA-----ADLLSQ-RGPDSQGVLVIVGDGVDIKAIEEEIRMQCQSLP 93 (198)
Q Consensus 34 ~AGPSEvlViAD~tAnp~~vA-----aDLLaQ-Hdp~a~avLvt~~~~l~~~~V~~~i~~~l~~l~ 93 (198)
..|-. +++ .-.|.-....+ ...+.+ .....+++.+++..+++ .++.+++.+.+....
T Consensus 64 ~~~~~-~l~-~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~-~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 64 LHGRE-LLA-SAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELA-SQIHRELIKISEGTG 126 (245)
T ss_dssp HTTCC-EEE-ECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHH-HHHHHHHHHHTTTSC
T ss_pred hCCCC-EEE-ECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHH-HHHHHHHHHHhcccC
Confidence 44533 444 44455555443 333333 34455799999999995 999998888766543
No 103
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=25.31 E-value=1.9e+02 Score=20.72 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=40.7
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCce-EE-EeCCHHHHHHHHhhhcCcceeecc----cChHHHHhccchhc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNF-MV-FAREIMRAITFSNLYAPEHLIVSA----KDTEKWESIIENAG 135 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~-iv-~v~~l~eai~~~N~~APEHL~l~~----~d~~~~l~~I~nAG 135 (198)
-|||..+... ..+.+.+.|+..++. ++ .+.+.+++++......|.=+.+-. .+..+++.+|+...
T Consensus 27 ~ILivdd~~~----~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~ 97 (164)
T 3t8y_A 27 RVLVVDDSAF----MRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKKA 97 (164)
T ss_dssp EEEEECSCHH----HHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHS
T ss_pred EEEEEcCCHH----HHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4666666543 233455556655543 23 588999999998888776444433 34567888887654
No 104
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=24.36 E-value=1.2e+02 Score=23.98 Aligned_cols=75 Identities=15% Similarity=0.263 Sum_probs=50.8
Q ss_pred CCceEEEecCchHhHHHHHHHHHHHHhhCC-ceEEEeCCHHHHHHHHhhhc-CcceeecccChHHHHhccchh---cccc
Q 046320 64 DSQGVLVIVGDGVDIKAIEEEIRMQCQSLP-NFMVFAREIMRAITFSNLYA-PEHLIVSAKDTEKWESIIENA---GSML 138 (198)
Q Consensus 64 ~a~avLvt~~~~l~~~~V~~~i~~~l~~l~-g~iv~v~~l~eai~~~N~~A-PEHL~l~~~d~~~~l~~I~nA---GsiF 138 (198)
.+..|+|.+|+ ++-+.+++.+.++ ..| |.-+.+-+.+++++..|.-. -+.+-|.+++|...++-+++- -+|=
T Consensus 29 ~~~~IiVvnD~-vA~D~~~k~~lk~--A~P~gvk~~i~sve~ai~~~~~~~~~~~v~il~k~p~d~~~lv~~g~~i~~vN 105 (163)
T 3p3v_A 29 NCNTVIVANDA-VSEDKIQQSLMKT--VIPSSIAIRFFSIQKVIDIIHKASPAQSIFIVVKDLQDAKLLVEGGVPITEIN 105 (163)
T ss_dssp TCSEEEEECHH-HHHCHHHHHHHGG--GSCTTSEEEEECHHHHHHHGGGCCTTCEEEEEESSHHHHHHHHHTTCCCCEEE
T ss_pred CCCEEEEEccc-ccCCHHHHHHHHh--hCCCCceEEEEEHHHHHHHHhccCCCceEEEEECCHHHHHHHHHcCCCCCEEE
Confidence 34567777665 4346777766553 335 76677789999999988643 358889999999888766543 2344
Q ss_pred cCC
Q 046320 139 FGE 141 (198)
Q Consensus 139 lG~ 141 (198)
+|.
T Consensus 106 vG~ 108 (163)
T 3p3v_A 106 IGN 108 (163)
T ss_dssp EEE
T ss_pred ECC
Confidence 554
No 105
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=24.01 E-value=1.9e+02 Score=20.37 Aligned_cols=65 Identities=14% Similarity=-0.005 Sum_probs=36.6
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEE-EeCCHHHHHHHHhhh--cCcceeecc----cChHHHHhccchhc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMV-FAREIMRAITFSNLY--APEHLIVSA----KDTEKWESIIENAG 135 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv-~v~~l~eai~~~N~~--APEHL~l~~----~d~~~~l~~I~nAG 135 (198)
-|||..+.....+.+ .+.|+...-.++ .+.+.+++++..... -|.=+.+-. .+..+++++|+..+
T Consensus 38 ~Ilivdd~~~~~~~l----~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 38 NVLIVDDSVFTVKQL----TQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD 109 (157)
T ss_dssp EEEEECSCHHHHHHH----HHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC
T ss_pred EEEEEeCCHHHHHHH----HHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC
Confidence 455555543322433 334444322345 688899999988887 444333322 24567888887643
No 106
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=23.53 E-value=1.8e+02 Score=19.77 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=52.8
Q ss_pred ceEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecccChHHHHhccchh----cccccCC
Q 046320 66 QGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAKDTEKWESIIENA----GSMLFGE 141 (198)
Q Consensus 66 ~avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~d~~~~l~~I~nA----GsiFlG~ 141 (198)
.-|||..+.....+.+.. .|+...-.+..+.+.+++++......|.=+.+--.+..+++++++.. --|++..
T Consensus 19 ~~ilivdd~~~~~~~l~~----~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~~~~~g~~~~~~l~~~~~~~~ii~ls~ 94 (137)
T 2pln_A 19 MRVLLIEKNSVLGGEIEK----GLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEKHSSIVVLVSSD 94 (137)
T ss_dssp SEEEEECSCHHHHHHHHH----HHHHTTCEEEEESCHHHHHHHHHHSCCSEEEECSTTHHHHHHHHHHHSTTSEEEEEES
T ss_pred CeEEEEeCCHHHHHHHHH----HHHHcCcEEEEeCCHHHHHHHHHcCCCCEEEEcCccHHHHHHHHHhcCCCccEEEEeC
Confidence 345555554332244444 34433234677899999999988876643332223556788888754 2344443
Q ss_pred CCccc-cccccCCcccccccc-c-hHHHH
Q 046320 142 WTPES-ARMYGGVSLDSFLKY-V-TVQSL 167 (198)
Q Consensus 142 ~tp~a-AR~~sgLsv~~FlK~-~-s~~~~ 167 (198)
+.... ....-..++.+|+.+ . +..++
T Consensus 95 ~~~~~~~~~~~~~g~~~~l~kP~~~~~~l 123 (137)
T 2pln_A 95 NPTSEEEVHAFEQGADDYIAKPYRSIKAL 123 (137)
T ss_dssp SCCHHHHHHHHHTTCSEEEESSCSCHHHH
T ss_pred CCCHHHHHHHHHcCCceeeeCCCCCHHHH
Confidence 33222 222223456676644 4 55555
No 107
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=23.44 E-value=1.8e+02 Score=19.74 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=53.8
Q ss_pred ceEEEecCchHhHHHHHHHHHHHHhhCCc--eEEEeCCHHHHHHHHhh-----hcCcceeecc----cChHHHHhccchh
Q 046320 66 QGVLVIVGDGVDIKAIEEEIRMQCQSLPN--FMVFAREIMRAITFSNL-----YAPEHLIVSA----KDTEKWESIIENA 134 (198)
Q Consensus 66 ~avLvt~~~~l~~~~V~~~i~~~l~~l~g--~iv~v~~l~eai~~~N~-----~APEHL~l~~----~d~~~~l~~I~nA 134 (198)
..|||..+... ..+.+...|..... .+..+.+.++|++.... ..|.=+.+-. .+..+++++|+.-
T Consensus 10 ~~iLivdd~~~----~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 10 DSVLLIDDDDI----VNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQH 85 (146)
T ss_dssp EEEEEECSCHH----HHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred ceEEEEeCCHH----HHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 35666666543 23345555555543 56778899999998887 5565433332 2456788888762
Q ss_pred ----c----ccccCCCC-ccccccccCCc-ccccc-ccchHHHH
Q 046320 135 ----G----SMLFGEWT-PESARMYGGVS-LDSFL-KYVTVQSL 167 (198)
Q Consensus 135 ----G----siFlG~~t-p~aAR~~sgLs-v~~Fl-K~~s~~~~ 167 (198)
. -|++..+. +......-..+ +.+|+ |..+..++
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L 129 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANAL 129 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHH
T ss_pred hhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHH
Confidence 1 23443322 22222223333 56555 55566655
No 108
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.23 E-value=1.8e+02 Score=19.69 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=53.3
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchhc----ccc
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENAG----SML 138 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nAG----siF 138 (198)
-|||..+.....+.+ .+.|+...-.+..+.+.+++++......|.=+.+-.. +..+++.+++..+ -|+
T Consensus 9 ~ilivdd~~~~~~~l----~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 9 KILIVEDDTDAREWL----STIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp CEEEECSCHHHHHHH----HHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCHHHHHHH----HHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 355555543322433 4444442224678899999999998888865444433 4568888888653 344
Q ss_pred cCCCCccc-cccccCCcccccc-ccchHHHH
Q 046320 139 FGEWTPES-ARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 139 lG~~tp~a-AR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
+..+.... ....-..++.+|+ |..+..++
T Consensus 85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l 115 (137)
T 3hdg_A 85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRL 115 (137)
T ss_dssp CCCCCCHHHHHHHHHHCCSEECCSSCCHHHH
T ss_pred EecCcChHHHHHHHhCCcceeEcCCCCHHHH
Confidence 44433222 2222233455655 45566655
No 109
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=22.48 E-value=1.5e+02 Score=19.34 Aligned_cols=72 Identities=8% Similarity=0.003 Sum_probs=36.7
Q ss_pred EEEeCCHHHHHHHHhhhcCcceeecccCh----HHHHhccchh----cccccCCCCc-cccccccCCcccccc-ccchHH
Q 046320 96 MVFAREIMRAITFSNLYAPEHLIVSAKDT----EKWESIIENA----GSMLFGEWTP-ESARMYGGVSLDSFL-KYVTVQ 165 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~APEHL~l~~~d~----~~~l~~I~nA----GsiFlG~~tp-~aAR~~sgLsv~~Fl-K~~s~~ 165 (198)
+..+.+.+++++..+...|.=+.+-..-| .+++++++.. --|++..+.. ......-..++.+|+ |..+..
T Consensus 30 v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~ 109 (124)
T 1dc7_A 30 CTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDID 109 (124)
T ss_dssp CEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHH
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHH
Confidence 45566777777776666664433333222 3445555543 2355544332 223333344566775 555666
Q ss_pred HH
Q 046320 166 SL 167 (198)
Q Consensus 166 ~~ 167 (198)
++
T Consensus 110 ~l 111 (124)
T 1dc7_A 110 EA 111 (124)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 110
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=22.09 E-value=3.1e+02 Score=23.29 Aligned_cols=77 Identities=8% Similarity=0.070 Sum_probs=40.7
Q ss_pred ceEEEEeCCCCCHH-HHH-----------HHHhhccCCCCceEEEecCchHhHHHHHHHHHHHHhhCCceEEEe-----C
Q 046320 38 AQVLVIADRYPSPL-HVA-----------ADLLSQRGPDSQGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFA-----R 100 (198)
Q Consensus 38 SEvlViAD~tAnp~-~vA-----------aDLLaQHdp~a~avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v-----~ 100 (198)
-|++-++|.+.+-. .++ -|||+. ++--+|+|++....-.+-+.+.++. |.-|+| .
T Consensus 28 ~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~--~~vD~V~i~tp~~~H~~~~~~al~a------Gk~Vl~EKP~a~ 99 (387)
T 3moi_A 28 AQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQH--VQMDAVYIASPHQFHCEHVVQASEQ------GLHIIVEKPLTL 99 (387)
T ss_dssp EEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHH--SCCSEEEECSCGGGHHHHHHHHHHT------TCEEEECSCCCS
T ss_pred eEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcC--CCCCEEEEcCCcHHHHHHHHHHHHC------CCceeeeCCccC
Confidence 37777888643221 122 233333 3344677776665433444444443 443443 4
Q ss_pred CHHHHHHHHhhhcCcceeeccc
Q 046320 101 EIMRAITFSNLYAPEHLIVSAK 122 (198)
Q Consensus 101 ~l~eai~~~N~~APEHL~l~~~ 122 (198)
+.+|+-++.....--.+.+++.
T Consensus 100 ~~~e~~~l~~~a~~~g~~~~v~ 121 (387)
T 3moi_A 100 SRDEADRMIEAVERAGVHLVVG 121 (387)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEC
T ss_pred CHHHHHHHHHHHHHhCCeEEEE
Confidence 7888888776554444555444
No 111
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=21.96 E-value=2.3e+02 Score=24.44 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=35.2
Q ss_pred EEEeCCCCCHHHHHHHHhhc----cCC---CCceEEEecCchHhHHHHHHHHHHHHhhC
Q 046320 41 LVIADRYPSPLHVAADLLSQ----RGP---DSQGVLVIVGDGVDIKAIEEEIRMQCQSL 92 (198)
Q Consensus 41 lViAD~tAnp~~vAaDLLaQ----Hdp---~a~avLvt~~~~l~~~~V~~~i~~~l~~l 92 (198)
+++++.|.-...+++=+..- ..+ ..++++|++..+|+ .++.+++.+.+...
T Consensus 25 ~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~-~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 25 ALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVY-EQQKNVFKHHFERQ 82 (556)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHH-HHHHHHHHHHHGGG
T ss_pred EEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHH-HHHHHHHHHHhccc
Confidence 56777777766655433322 222 56788889998995 99999999887743
No 112
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.73 E-value=1.8e+02 Score=19.06 Aligned_cols=97 Identities=7% Similarity=0.027 Sum_probs=53.7
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhhCCceEEEeCCHHHHHHHHhhhcCcceeecc-----cChHHHHhccchh------c
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVSA-----KDTEKWESIIENA------G 135 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~~l~eai~~~N~~APEHL~l~~-----~d~~~~l~~I~nA------G 135 (198)
-|||..+.....+.+...+.+ ..-.+..+.+.+++++......|.=+.+-. .+..+++++++.. -
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~----~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ 82 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEG----RGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVP 82 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHH----HTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSC
T ss_pred eEEEEeCCHHHHHHHHHHHHh----cCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCC
Confidence 455555543322544444443 222366788999999998887776444432 2446778887754 2
Q ss_pred ccccCCCCccccccccCCccccccc-cchHHHH
Q 046320 136 SMLFGEWTPESARMYGGVSLDSFLK-YVTVQSL 167 (198)
Q Consensus 136 siFlG~~tp~aAR~~sgLsv~~FlK-~~s~~~~ 167 (198)
-|+++...+......-..++.+|+. ..+..++
T Consensus 83 ii~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l 115 (127)
T 2gkg_A 83 IVIIGNPDGFAQHRKLKAHADEYVAKPVDADQL 115 (127)
T ss_dssp EEEEECGGGHHHHHHSTTCCSEEEESSCCHHHH
T ss_pred EEEEecCCchhHHHHHHhCcchheeCCCCHHHH
Confidence 3555333333333334455666654 4455554
No 113
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=21.52 E-value=2.6e+02 Score=20.86 Aligned_cols=39 Identities=5% Similarity=-0.071 Sum_probs=20.8
Q ss_pred EEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchh
Q 046320 96 MVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENA 134 (198)
Q Consensus 96 iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nA 134 (198)
+..+.|.+++++......|.=+.+-.. +..+++.+++..
T Consensus 29 v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~ 71 (225)
T 1kgs_A 29 VDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRES 71 (225)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 445666677766666655543332222 335566666543
No 114
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=21.48 E-value=26 Score=31.43 Aligned_cols=94 Identities=9% Similarity=0.172 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHhhc---cCCCCceEEEecCchHhHHHHHHHHHHHHhh----CC--ceEEEeCCHHHHHHHHhhhcCc
Q 046320 45 DRYPSPLHVAADLLSQ---RGPDSQGVLVIVGDGVDIKAIEEEIRMQCQS----LP--NFMVFAREIMRAITFSNLYAPE 115 (198)
Q Consensus 45 D~tAnp~~vAaDLLaQ---Hdp~a~avLvt~~~~l~~~~V~~~i~~~l~~----l~--g~iv~v~~l~eai~~~N~~APE 115 (198)
.+...|..+.-..|.+ ++| --++. +.+.+.+ -+-.+++++.+.. -| |.=|.++|.-+.-.+-....-.
T Consensus 12 ~g~~s~~el~~a~l~ri~~~~~-lna~~-~~~~~~A-l~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~ 88 (434)
T 2dc0_A 12 TGRTTPLALLEEALERAKAFQD-RNALA-YLDEEAA-RKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTK 88 (434)
T ss_dssp TTSCCHHHHHHHHHHHHHHTGG-GCCEE-EECHHHH-HHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTTBCCCTTCS
T ss_pred cCCCCHHHHHHHHHHHHHHhCC-CcEEE-EcCHHHH-HHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCCcccCCCCc
Confidence 3445677777777766 666 45554 4444432 2233344544432 12 7666666643222222223333
Q ss_pred ceeecccChHHHHhccchhcccccCC
Q 046320 116 HLIVSAKDTEKWESIIENAGSMLFGE 141 (198)
Q Consensus 116 HL~l~~~d~~~~l~~I~nAGsiFlG~ 141 (198)
.+..-...--.++++++.||+|++|+
T Consensus 89 ~~~~~a~~dA~vV~rL~~aGAii~GK 114 (434)
T 2dc0_A 89 APLPPLPEEARAVRRLREAGALLFAK 114 (434)
T ss_dssp SCCCCCCSSCHHHHHHHHTTCEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHCCCEEEEE
Confidence 33111022357999999999999996
No 115
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=21.45 E-value=2.9e+02 Score=23.06 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=35.2
Q ss_pred HHHhhc-cCCCCceEEEecCchHhHHHHHHHHHHHHhhCCceEEEeC-----CHHHHHHHHhhhcCcceeecccC
Q 046320 55 ADLLSQ-RGPDSQGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAR-----EIMRAITFSNLYAPEHLIVSAKD 123 (198)
Q Consensus 55 aDLLaQ-Hdp~a~avLvt~~~~l~~~~V~~~i~~~l~~l~g~iv~v~-----~l~eai~~~N~~APEHL~l~~~d 123 (198)
-+||+. .++| +|.|++....-.+-+.+.++. |.=|+|+ +++|+-++.....--.+.+++.-
T Consensus 73 ~~ll~~~~~vD--~V~i~tp~~~H~~~~~~al~a------GkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~ 139 (330)
T 4ew6_A 73 EAMLDAEPSID--AVSLCMPPQYRYEAAYKALVA------GKHVFLEKPPGATLSEVADLEALANKQGASLFASW 139 (330)
T ss_dssp HHHHHHCTTCC--EEEECSCHHHHHHHHHHHHHT------TCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred HHHHhCCCCCC--EEEEeCCcHHHHHHHHHHHHc------CCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 356665 4555 677777765543545555443 5555554 78888777665444444444443
No 116
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.85 E-value=2e+02 Score=19.37 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=52.5
Q ss_pred eEEEecCchHhHHHHHHHHHHHHhh-CCce-EEEeCCHHHHHHHHhhhcCcceeeccc----ChHHHHhccchh------
Q 046320 67 GVLVIVGDGVDIKAIEEEIRMQCQS-LPNF-MVFAREIMRAITFSNLYAPEHLIVSAK----DTEKWESIIENA------ 134 (198)
Q Consensus 67 avLvt~~~~l~~~~V~~~i~~~l~~-l~g~-iv~v~~l~eai~~~N~~APEHL~l~~~----d~~~~l~~I~nA------ 134 (198)
-|||..+.....+.+. +.|+. ..-. +..+.+.+++++......|.=+.+-.. +..+++++++..
T Consensus 10 ~iLivdd~~~~~~~l~----~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 85 (143)
T 3cnb_A 10 SILIIEDDKEFADMLT----QFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANI 85 (143)
T ss_dssp EEEEECSCHHHHHHHH----HHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTS
T ss_pred eEEEEECCHHHHHHHH----HHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCC
Confidence 4555555433224444 34444 3223 677899999999998887764444332 456788888762
Q ss_pred cccccCCCCccc-cccccCCcccccc-ccchHHHH
Q 046320 135 GSMLFGEWTPES-ARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 135 GsiFlG~~tp~a-AR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
--|++....... ....-..++.+|+ |..+..++
T Consensus 86 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l 120 (143)
T 3cnb_A 86 IVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLL 120 (143)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHH
T ss_pred cEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHH
Confidence 124443332222 2222234566665 45566555
No 117
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=20.72 E-value=1.9e+02 Score=24.82 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=35.2
Q ss_pred EEEeCCCCCHHHHHHHHhh-c---cCC---CCceEEEecCchHhHHHHHHHHHHHHhhC
Q 046320 41 LVIADRYPSPLHVAADLLS-Q---RGP---DSQGVLVIVGDGVDIKAIEEEIRMQCQSL 92 (198)
Q Consensus 41 lViAD~tAnp~~vAaDLLa-Q---Hdp---~a~avLvt~~~~l~~~~V~~~i~~~l~~l 92 (198)
+++++.|.-...+++=+.. + ..+ ..++++|++..+|+ .++.+++.+.+..+
T Consensus 22 ~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~-~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 22 TIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY-EQQATVFSRYFERL 79 (555)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHH-HHHHHHHHHHHHTT
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHH-HHHHHHHHHHhccC
Confidence 5677777766665433332 2 222 66788899998995 99999999888754
No 118
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=20.46 E-value=2.2e+02 Score=19.76 Aligned_cols=98 Identities=11% Similarity=0.159 Sum_probs=53.8
Q ss_pred ceEEEecCchHhHHHHHHHHHHHHhhCCc--eEEEeCCHHHHHHHHhh-------hcCcceeecc----cChHHHHhccc
Q 046320 66 QGVLVIVGDGVDIKAIEEEIRMQCQSLPN--FMVFAREIMRAITFSNL-------YAPEHLIVSA----KDTEKWESIIE 132 (198)
Q Consensus 66 ~avLvt~~~~l~~~~V~~~i~~~l~~l~g--~iv~v~~l~eai~~~N~-------~APEHL~l~~----~d~~~~l~~I~ 132 (198)
.-|||..|... ..+.+.+.|+.... .+..+.+.+++++.... .-|.=+.+-. .|-.+++++++
T Consensus 9 ~~ILivdd~~~----~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~ 84 (149)
T 1i3c_A 9 KVILLVEDSKA----DSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIK 84 (149)
T ss_dssp EEEEEECCCHH----HHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CeEEEEECCHH----HHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 34677666543 23344555555432 46678899999988875 3453332222 24567888887
Q ss_pred hhc------ccccCCCC-ccccccccCCcccccc-ccchHHHH
Q 046320 133 NAG------SMLFGEWT-PESARMYGGVSLDSFL-KYVTVQSL 167 (198)
Q Consensus 133 nAG------siFlG~~t-p~aAR~~sgLsv~~Fl-K~~s~~~~ 167 (198)
..+ -|++.... +..++..-..++.+|+ |..+..++
T Consensus 85 ~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L 127 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDL 127 (149)
T ss_dssp HCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHH
T ss_pred hCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHH
Confidence 643 24443332 2222222234567775 55666666
No 119
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=20.34 E-value=2.9e+02 Score=21.07 Aligned_cols=92 Identities=8% Similarity=-0.070 Sum_probs=48.9
Q ss_pred EEEeCCCCCHHHHHHH-----Hhhc----cCCCCceEEEecCchHhHHHHHHHHHHHHhhCC-ceEEEeCCH--HHHHHH
Q 046320 41 LVIADRYPSPLHVAAD-----LLSQ----RGPDSQGVLVIVGDGVDIKAIEEEIRMQCQSLP-NFMVFAREI--MRAITF 108 (198)
Q Consensus 41 lViAD~tAnp~~vAaD-----LLaQ----Hdp~a~avLvt~~~~l~~~~V~~~i~~~l~~l~-g~iv~v~~l--~eai~~ 108 (198)
+++...|.-....++= .+.+ ..+..+++++++..+++ .++.+++.+.....+ ....+..+. .+-...
T Consensus 65 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~-~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 143 (236)
T 2pl3_A 65 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA-YQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER 143 (236)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH-HHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHH-HHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh
Confidence 5555666666665432 2222 13455788899999995 999988887765543 222222222 111111
Q ss_pred HhhhcCcceeecccChHHHHhccchhcccc
Q 046320 109 SNLYAPEHLIVSAKDTEKWESIIENAGSML 138 (198)
Q Consensus 109 ~N~~APEHL~l~~~d~~~~l~~I~nAGsiF 138 (198)
+. .-.+.+..|..++..+++-+..+
T Consensus 144 ---~~--~~~iiv~Tp~~l~~~l~~~~~~~ 168 (236)
T 2pl3_A 144 ---IN--NINILVCTPGRLLQHMDETVSFH 168 (236)
T ss_dssp ---HT--TCSEEEECHHHHHHHHHHCSSCC
T ss_pred ---CC--CCCEEEECHHHHHHHHHhcCCcc
Confidence 11 22344455777776665543333
Done!