RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046320
(198 letters)
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
homodimer, rossman fold, 4 domai L-histidine
biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
{Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
1kar_A
Length = 434
Score = 185 bits (471), Expect = 3e-57
Identities = 74/237 (31%), Positives = 109/237 (45%), Gaps = 54/237 (22%)
Query: 3 KIFGPGNKYVTAAKMILQLQF-FPAILKKSHDKVQTA---QVLVIADRYPSPLHVAADLL 58
KIFGPGN +VT AK + + AI D A +VLVIAD +P VA+DLL
Sbjct: 205 KIFGPGNAFVTEAKRQVSQRLDGAAI-----DMP--AGPSEVLVIADSGATPDFVASDLL 257
Query: 59 SQ--RGPDSQGVLVIVGDGVDIKAIEEEIRMQCQSLP-----------NFMVFAREIMRA 105
SQ GPDSQ +L+ + + + E + Q LP + ++ +++ +
Sbjct: 258 SQAEHGPDSQVILLTPAADM-ARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQC 316
Query: 106 ITFSNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPES-----------------AR 148
+ SN Y PEHLI+ ++ + I +AGS+ G+W+PES
Sbjct: 317 VEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTA 376
Query: 149 MYGGVSLDSFLKYVTVQSL------------ATMAEIEGLEAHKRAITLRLQDIAAR 193
+ L F K +TVQ L T+A E L AHK A+TLR+ + +
Sbjct: 377 TCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQ 433
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 2e-05
Identities = 32/201 (15%), Positives = 57/201 (28%), Gaps = 60/201 (29%)
Query: 45 DRYPSPL----HVAADLLSQRGPDSQGVLVIVGDGVDIKA-IEEEIRMQCQ--------S 91
Y + +A+ LS+ + + G++I +E + S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 92 LP--------NFMVFA----------REIMRAIT--FSNLYAPEHLIVSAKDTEKWESII 131
P +++V A R ++ T L + ++ D+ WES
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA--VAIAETDS--WESFF 293
Query: 132 ENAGSM---LFGEWT-PESARMYGGVSLDSFLKYVTVQSLAT-------MAEIEGL---- 176
+ LF + Y SL + SL M I L
Sbjct: 294 VSVRKAITVLF--FIGVRCYEAYPNTSLPP---SILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 177 -EAHKRAITLRLQDIAARQVS 196
+ + L A +QV
Sbjct: 349 VQDYVNKTNSHLP--AGKQVE 367
Score = 41.2 bits (96), Expect = 1e-04
Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 29/114 (25%)
Query: 11 YVTAAKMILQLQFFPAILKKSHDKVQTAQVLVIADRYPSPLHVAADLLSQRGPDSQGV-- 68
+ + + + + FF I + ++ YP + +L +++GV
Sbjct: 292 FFVSVRKAITVLFF--IGVRCYE------------AYP-NTSLPPSILEDSLENNEGVPS 336
Query: 69 --LVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNLYAPEHLIVS 120
L I + + +++ + LP +++ I+ N ++L+VS
Sbjct: 337 PMLSISN--LTQEQVQDYVNKTNSHLPA----GKQV--EISLVN--GAKNLVVS 380
Score = 34.3 bits (78), Expect = 0.021
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 57/163 (34%)
Query: 35 VQTAQVLVIADRYPSPLHVAADLLSQRG--------PDSQGV----LVIVGDGVDIKAIE 82
A V+ I +++ RG D G ++ + G +
Sbjct: 1771 ASLADVMSIES--------LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 83 EE-IRMQCQSL---PNFMVFAREIMRAITFSNLYAPEHLIVSAKDTEKWESIIENAGSML 138
+E ++ + + ++V EI N V+A D ++ ++L
Sbjct: 1823 QEALQYVVERVGKRTGWLV---EI--V----NYNVENQQYVAAGDLRA----LDTVTNVL 1869
Query: 139 FGEWTPESARMYGGVSLDSFLKY--VTVQSLATMAEIEGLEAH 179
+F+K + + L +E +E H
Sbjct: 1870 ------------------NFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 30.4 bits (68), Expect = 0.45
Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 55/169 (32%)
Query: 25 PAILKKSHDKVQTAQVLVIADRYPSPLHVAADLLSQRGPDSQGVLVIVGDGVDIKAIEEE 84
P L SH ++ +LV P+ A L ++ I+ + + A ++E
Sbjct: 8 PLTL--SHGSLEHV-LLV-----PTASFFIASQLQEQ------FNKILPEPTEGFAADDE 53
Query: 85 IRMQCQSLPNFMVF------------AREIMRAI--TFSNLYAPE---HLIVSA------ 121
+ + F+ + +++ F N Y H + +
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 122 KDTEKWESIIEN---------------AGSMLFGEWTPESARMY---GG 152
K + +I+N + S LF +A++ GG
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.18
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 26/53 (49%)
Query: 125 EKWESI--IENAGSM-LFGEWTPESARMYGGVSLDSFLKYVTVQSLATMAEIE 174
EK +++ ++ S+ L+ +SA +LA A +E
Sbjct: 18 EK-QALKKLQA--SLKLYA---DDSA-----------------PALAIKATME 47
Score = 27.2 bits (59), Expect = 2.8
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 100 REIMRAITFS-NLYAPEH---LIVSA 121
++ ++ + S LYA + L + A
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
Score = 26.8 bits (58), Expect = 3.6
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 27/55 (49%)
Query: 29 KKSHDKVQTAQVLVIADRYPSPLHVAADLLSQRGPDSQGVLVIVGDGVDIKA-IE 82
K++ K+Q + L + A DS L IKA +E
Sbjct: 19 KQALKKLQ------------ASLKLYA-------DDSAPALA-------IKATME 47
>3ea6_A Staphylococcal enterotoxin K; superantigen; 0.92A {Staphylococcus
aureus} PDB: 2ntt_A 2nts_A 2g9h_D*
Length = 219
Score = 27.1 bits (59), Expect = 4.0
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 138 LFG---EWTPESARMYGGVSLDS--------FLKYVTVQSLATMAEIEGLEAHKRAITLR 186
+FG + +YGGV+ + + + + +K+ +T +
Sbjct: 64 VFGISYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKFVTAQ 123
Query: 187 LQDIAARQ 194
D+ R+
Sbjct: 124 EIDVKLRK 131
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2,
protein structure initiative, no structural genomics
consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Length = 247
Score = 25.9 bits (58), Expect = 8.9
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 99 AREIMRAITFSNLYAPEHLIVSAKDTEKWESIIENAG 135
++ + N+ + +I S +T ++ E G
Sbjct: 14 GMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYG 50
>3bjq_A Phage-related protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
HET: MSE PG4; 2.05A {Bordetella bronchiseptica RB50}
Length = 316
Score = 25.9 bits (56), Expect = 9.2
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 77 DIKAIEEEIRMQCQSLPNFMVFAREIMRAIT 107
D++ +E I PN ++ +R+ + A
Sbjct: 161 DVETAKEAIADSIGMEPNRLMLSRKALSACK 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.376
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,023,831
Number of extensions: 181617
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 23
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)