RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046320
         (198 letters)



>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
           coli [TaxId: 562]}
          Length = 431

 Score = 95.5 bits (237), Expect = 6e-24
 Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 44/231 (19%)

Query: 1   AEKIFGPGNKYVTAAKMILQLQFFPAILKKSHDKVQTAQVLVIADRYPSPLHVAADLLSQ 60
            +KIFGPGN +VT AK  +  +   A +         ++VLVIAD   +P  VA+DLLSQ
Sbjct: 200 VDKIFGPGNAFVTEAKRQVSQRLDGAAIDMP---AGPSEVLVIADSGATPDFVASDLLSQ 256

Query: 61  RGPDSQGVLVIVGDGVD------------IKAIEEEIRMQCQSLPNFMVFAREIMRAITF 108
                   ++++    D            +  +      +     + ++  +++ + +  
Sbjct: 257 AEHGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEI 316

Query: 109 SNLYAPEHLIVSAKDTEKWESIIENAGSMLFGEWTPES-----------------ARMYG 151
           SN Y PEHLI+  ++  +    I +AGS+  G+W+PES                      
Sbjct: 317 SNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCS 376

Query: 152 GVSLDSFLKYVTVQSL------------ATMAEIEGLEAHKRAITLRLQDI 190
            + L  F K +TVQ L             T+A  E L AHK A+TLR+  +
Sbjct: 377 SLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNAL 427


>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 238

 Score = 27.5 bits (60), Expect = 0.88
 Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 6/63 (9%)

Query: 58  LSQRGPDSQGVLVIVGDG------VDIKAIEEEIRMQCQSLPNFMVFAREIMRAITFSNL 111
           L  RG DS G+ V+  +G         K        +   L      A          + 
Sbjct: 23  LEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSE 82

Query: 112 YAP 114
              
Sbjct: 83  VNA 85


>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
          (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 264

 Score = 27.2 bits (60), Expect = 1.1
 Identities = 9/43 (20%), Positives = 14/43 (32%)

Query: 41 LVIADRYPSPLHVAADLLSQRGPDSQGVLVIVGDGVDIKAIEE 83
          + I  R+   L      +   G   Q V  +V D       +E
Sbjct: 32 VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDE 74


>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
          elegans [TaxId: 6239]}
          Length = 274

 Score = 27.3 bits (60), Expect = 1.2
 Identities = 6/43 (13%), Positives = 16/43 (37%)

Query: 41 LVIADRYPSPLHVAADLLSQRGPDSQGVLVIVGDGVDIKAIEE 83
          + I  R    L      + + G  ++ +  +V D  +    ++
Sbjct: 31 VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDD 73


>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis
          elegans [TaxId: 6239]}
          Length = 272

 Score = 26.9 bits (59), Expect = 1.8
 Identities = 7/43 (16%), Positives = 15/43 (34%)

Query: 41 LVIADRYPSPLHVAADLLSQRGPDSQGVLVIVGDGVDIKAIEE 83
          + I  R    L     ++ + G   + V  +V D       ++
Sbjct: 32 VTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQ 74


>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase
          {Klebsiella pneumoniae [TaxId: 573]}
          Length = 255

 Score = 26.7 bits (58), Expect = 1.9
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 41 LVIADRYPSPLHVAADLLSQRGPDSQGVLVIVGDGVDIKAIEEEIR 86
          + IAD   +     A  ++Q G  +  V V V D   + A  E+ R
Sbjct: 28 VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR 73


>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase,
          N-terminal domain {Bacillus subtilis [TaxId: 1423]}
          Length = 234

 Score = 26.1 bits (56), Expect = 3.0
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 48 PSPLHVAADLLSQRGPDSQGVLVIVGDGVDIK 79
          P   +     L  RG +  G++   G+ +   
Sbjct: 13 PQITYYGLHSLQHRGQEGAGIVATDGEKLTAH 44


>d1f0la1 b.2.1.1 (A:381-535) Diphtheria toxin, C-terminal domain
           {Corynebacterium diphtheriae [TaxId: 1717]}
          Length = 155

 Score = 25.5 bits (55), Expect = 3.1
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 49  SPLHVAADLLSQRGPDSQGVLVIVGDGVDIKAIEEEIRMQCQSLPNFMVFAREIMRAITF 108
           +PL +A  LL    P   G L +      I     +IRM+C+++   + F R        
Sbjct: 45  TPLPIAGVLL----PTIPGKLDVNKSKTHISVNGRKIRMRCRAIDGDVTFCRPKSPVYVG 100

Query: 109 SNLYAPEHLIVSAKDTEKWES 129
           + ++A  H+      +EK  S
Sbjct: 101 NGVHANLHVAFHRSSSEKIHS 121


>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 192

 Score = 25.3 bits (54), Expect = 5.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 55 ADLLSQRGPDSQGVLV 70
          + L+  RGPD  G+  
Sbjct: 24 SRLMRHRGPDWSGIYA 39


>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal
          domain {Bacillus subtilis [TaxId: 1423]}
          Length = 67

 Score = 23.1 bits (50), Expect = 8.0
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 66 QGVLVIVGDGVDIKAIEEE 84
            +  +VGD V  +A  ++
Sbjct: 38 NKITPLVGDYVVYQAENDK 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 706,357
Number of extensions: 31345
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 13
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)