BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046324
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
Molecular Replacement
Length = 227
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 42
L SY QG N++ KI MTAPV + + P +GPF S + Q P
Sbjct: 91 LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 149
Query: 43 -IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGY 101
I+ V VR F F Q L L+ E +F+ K+ AGY
Sbjct: 150 FIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILR----EDGKVFDEKV----YYTAGY 201
Query: 102 NSPFQNENRINEVLL 116
NSP + NR NEV L
Sbjct: 202 NSPVKLLNRNNEVWL 216
>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
Length = 212
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 42
L SY QG N++ KI MTAPV + + P +GPF S + Q P
Sbjct: 72 LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 130
Query: 43 -IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGY 101
I+ V VR F F Q L L+ E +F+ K+ AGY
Sbjct: 131 FIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILR----EDGKVFDEKV----YYTAGY 182
Query: 102 NSPFQNENRINEVLL 116
NSP + NR NEV L
Sbjct: 183 NSPVKLLNRNNEVWL 197
>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp
Length = 192
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 30/136 (22%)
Query: 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNS---------QLQAHP-------IK 44
+ Y G ND+ + MT PV + P+ +G Q Q P +K
Sbjct: 64 IMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVK 123
Query: 45 LPKHKYVVV--RRFGDFMDDNSISTQASALKKSLKNS--TWESAIIFNNKISDDHLSVAG 100
+ + + + V +FG + + A+ L+ +L+ + T++ + + AG
Sbjct: 124 IEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYY----------CAG 173
Query: 101 YNSPFQNENRINEVLL 116
Y+ P + R NEV L
Sbjct: 174 YDPPMKPYGRRNEVWL 189
>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp
Length = 195
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 30/136 (22%)
Query: 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNS---------QLQAHP-------IK 44
+ Y G ND+ + MT PV + P+ +G Q Q P +K
Sbjct: 67 IMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVK 126
Query: 45 LPKHKYVVV--RRFGDFMDDNSISTQASALKKSLKNS--TWESAIIFNNKISDDHLSVAG 100
+ + + + V +FG + + A+ L+ +L+ + T++ + + AG
Sbjct: 127 IEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYY----------CAG 176
Query: 101 YNSPFQNENRINEVLL 116
Y+ P + R NEV L
Sbjct: 177 YDPPMKPYGRRNEVWL 192
>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp
Length = 195
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 30/136 (22%)
Query: 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNS---------QLQAHP-------IK 44
+ Y G ND+ + MT PV + P+ +G Q Q P +K
Sbjct: 67 IMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVK 126
Query: 45 LPKHKYVVV--RRFGDFMDDNSISTQASALKKSLKNS--TWESAIIFNNKISDDHLSVAG 100
+ + + + V +FG + + A+ L+ +L+ + T++ + + AG
Sbjct: 127 IEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYY----------CAG 176
Query: 101 YNSPFQNENRINEVLL 116
Y+ P + R NEV L
Sbjct: 177 YDPPMKPYGRRNEVWL 192
>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul
Length = 208
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 55/135 (40%), Gaps = 28/135 (20%)
Query: 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 42
L SY QG N++ KI TAPV + + P +GPF S + Q P
Sbjct: 72 LNSYIQGKNEKEXKIKXTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 130
Query: 43 -IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGY 101
I+ V VR F F Q L L+ E +F+ K+ AGY
Sbjct: 131 FIEDRAEXTVFVRSFDGFSSAQKNQEQLLTLASILR----EDGKVFDEKV----YYTAGY 182
Query: 102 NSPFQNENRINEVLL 116
NSP + NR NEV L
Sbjct: 183 NSPVKLLNRNNEVWL 197
>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul
Length = 208
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 42
L SY QG N++ KI TAPV + + P +GPF +S + Q P
Sbjct: 72 LNSYIQGKNEKEXKIKXTAPVTSYVEPG-SGPFESSTITISLYIPSEQQFDPPRPLESDV 130
Query: 43 -IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGY 101
I+ V VR F F Q L L+ E +F+ K+ AGY
Sbjct: 131 FIEDRAEXTVFVRSFDGFSSAQKNQEQLLTLASILR----EDGKVFDEKV----YYTAGY 182
Query: 102 NSPFQNENRINEVLL 116
NSP + NR NEV L
Sbjct: 183 NSPVKLLNRNNEVWL 197
>pdb|1AKO|A Chain A, Exonuclease Iii From Escherichia Coli
Length = 268
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 5 FQGNNDQSAKITMTA--PVLTNIIPSINGPFCNSQLQAHPIKLP 46
F G+++++ + + A P L + ING F + + HPIK P
Sbjct: 80 FPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFP 123
>pdb|2IX1|A Chain A, Rnase Ii D209n Mutant
Length = 664
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 6 QGNNDQSAKITMTAPVLTNIIP-----SIN-----GPFCNSQLQAHPIKLPKHKYVVVRR 55
QG ND+ A I P+L + IP +N G + ++++ HP+K + Y + +
Sbjct: 111 QGKNDRLA-IVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQ 169
Query: 56 FGDFMDDNSI 65
+ F DD+ +
Sbjct: 170 YITFGDDHFV 179
>pdb|2IX0|A Chain A, Rnase Ii
Length = 663
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 6 QGNNDQSAKITMTAPVLTNIIP-----SIN-----GPFCNSQLQAHPIKLPKHKYVVVRR 55
QG ND+ A I P+L + IP +N G + ++++ HP+K + Y + +
Sbjct: 110 QGKNDRLA-IVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQ 168
Query: 56 FGDFMDDNSI 65
+ F DD+ +
Sbjct: 169 YITFGDDHFV 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,492,482
Number of Sequences: 62578
Number of extensions: 120114
Number of successful extensions: 262
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 18
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)