Query 046324
Match_columns 119
No_of_seqs 103 out of 418
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04832 SOUL: SOUL heme-bindi 100.0 8.1E-36 1.7E-40 216.9 8.0 109 1-119 47-176 (176)
2 PRK10016 DNA gyrase inhibitor; 92.1 1.5 3.4E-05 30.5 8.0 54 39-104 2-55 (156)
3 COG3449 DNA gyrase inhibitor [ 92.0 0.99 2.2E-05 32.6 6.9 57 39-106 2-58 (154)
4 PF06445 GyrI-like: GyrI-like 88.5 1.7 3.6E-05 28.8 5.4 69 39-116 2-71 (155)
5 PF06445 GyrI-like: GyrI-like 81.1 13 0.00028 24.4 8.0 70 38-118 83-154 (155)
6 PRK10016 DNA gyrase inhibitor; 76.3 23 0.00049 24.5 8.6 68 39-118 83-152 (156)
7 smart00871 AraC_E_bind Bacteri 63.7 38 0.00083 22.1 6.9 61 39-106 1-61 (158)
8 PF14657 Integrase_AP2: AP2-li 45.0 33 0.00072 19.1 2.8 31 48-79 14-44 (46)
9 COG4978 Transcriptional regula 43.9 1.2E+02 0.0025 21.7 6.1 40 39-80 4-43 (153)
10 KOG3405 RNA polymerase subunit 43.3 8.3 0.00018 27.0 0.1 17 12-28 79-95 (136)
11 KOG4631 NADH:ubiquinone oxidor 39.5 16 0.00034 24.3 1.0 14 68-81 24-37 (100)
12 PRK15121 right oriC-binding tr 39.2 1.7E+02 0.0037 22.2 6.9 41 39-82 213-254 (289)
13 smart00871 AraC_E_bind Bacteri 36.6 1.2E+02 0.0025 19.7 5.0 41 38-80 83-123 (158)
14 PF07157 DNA_circ_N: DNA circu 34.4 40 0.00086 22.2 2.3 41 38-80 37-77 (93)
15 PF06437 ISN1: IMP-specific 5' 33.7 1.2E+02 0.0027 25.2 5.4 69 48-116 182-254 (408)
16 COG4195 Phage-related replicat 30.0 73 0.0016 24.0 3.3 36 50-85 99-142 (208)
17 COG5309 Exo-beta-1,3-glucanase 27.8 1E+02 0.0023 24.5 3.9 36 60-107 253-288 (305)
18 PRK10905 cell division protein 26.3 1.3E+02 0.0029 24.3 4.4 40 40-80 275-314 (328)
19 PF10081 Abhydrolase_9: Alpha/ 26.0 1E+02 0.0022 24.5 3.7 28 53-80 1-28 (289)
20 PF01187 MIF: Macrophage migra 24.9 1.7E+02 0.0037 19.2 4.2 48 45-104 54-102 (114)
21 PHA02763 hypothetical protein; 24.5 50 0.0011 21.8 1.4 20 54-73 62-81 (102)
22 TIGR02159 PA_CoA_Oxy4 phenylac 24.1 2.6E+02 0.0057 19.7 5.7 47 50-107 26-72 (146)
23 PF08312 cwf21: cwf21 domain; 22.7 1E+02 0.0022 17.6 2.3 20 58-78 24-43 (46)
24 PF11964 SpoIIAA-like: SpoIIAA 22.3 1.5E+02 0.0033 18.6 3.5 30 51-80 2-31 (109)
25 PF09413 DUF2007: Domain of un 22.0 1.5E+02 0.0032 17.3 3.1 43 66-117 9-51 (67)
26 cd03411 Ferrochelatase_N Ferro 21.4 1.2E+02 0.0026 21.2 3.0 40 57-106 62-101 (159)
27 TIGR01205 D_ala_D_alaTIGR D-al 20.2 1.1E+02 0.0024 23.2 2.9 30 53-82 3-33 (315)
No 1
>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []. It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.
Probab=100.00 E-value=8.1e-36 Score=216.93 Aligned_cols=109 Identities=37% Similarity=0.561 Sum_probs=82.5
Q ss_pred CccccCCCCCCCCccCcCcceEEEecCCC--------CCCccccC------------CceeEEeCCCCcEEEEEEecccC
Q 046324 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSI--------NGPFCNSQ------------LQAHPIKLPKHKYVVVRRFGDFM 60 (119)
Q Consensus 1 L~~YI~G~N~~~~ki~MT~PV~~~~~~~~--------~~~f~~p~------------~~V~i~~~p~~~~v~vr~F~G~~ 60 (119)
|++||+|+|+++++|+||+||++++.+.. ..+|++|. ++|+|++.| +.++||++|+|++
T Consensus 47 L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~~~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p-~~~~~v~~F~G~~ 125 (176)
T PF04832_consen 47 LFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESCEKEYTMSFFLPSEYQAENPPKPTDPDVFIEEVP-ERTVYVRRFSGFA 125 (176)
T ss_dssp HHHHHCT-CTT------BS-EEEEEEETTTTTCECEEEEEEE--HHHC-TS---BSSTTEEEEEC--SEEEEEEEECS--
T ss_pred HHHHHhcCCcccceeeccCCEEEEEEcCCCcccCCcEEEEEEcCcccccccCCCCCCCeEEEEEec-CcEEEEEEECCcC
Confidence 78999999999999999999999994221 11566653 899999999 9999999999999
Q ss_pred ChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCC-CCCeeeEEEEeC
Q 046324 61 DDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQN-ENRINEVLLWFD 119 (119)
Q Consensus 61 ~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~-~~R~NEVw~~~~ 119 (119)
++.++.+++++|+++|+++|+. +.+.|++|+||+||++ ++|||||||++.
T Consensus 126 ~~~~~~~~~~~L~~~L~~~g~~---------~~~~~~~a~Yd~P~~~~~~R~NEV~i~v~ 176 (176)
T PF04832_consen 126 TDEKIQEEAKKLRAALKKDGLK---------DKGYYYVAGYDPPFTPPFNRRNEVWIPVK 176 (176)
T ss_dssp SHHHHHHHHHHHHHHCCCTTHH---------CCCEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred CHHHHHHHHHHHHHHHHHcCCC---------cCCCeEEEEcCCCCCCccCcceEEEEecC
Confidence 9999999999999999999852 6789999999999665 999999999874
No 2
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=92.07 E-value=1.5 Score=30.49 Aligned_cols=54 Identities=6% Similarity=0.017 Sum_probs=42.3
Q ss_pred ceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCC
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSP 104 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P 104 (119)
+|.|+++| +..++..+..|-..+ .+.+--.+|.+++.++|+. .. ..+.-.||.|
T Consensus 2 ~v~i~~~~-~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~---------~~-~~~~i~~D~p 55 (156)
T PRK10016 2 NYEIKQEQ-KRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV---------PK-EWVAVYYDNP 55 (156)
T ss_pred ceEEEEcc-CceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC---------CC-cEEEEECCCC
Confidence 68999999 898888888886543 3677888999999999852 22 3667788999
No 3
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=91.97 E-value=0.99 Score=32.56 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=46.2
Q ss_pred ceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCC
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQ 106 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~ 106 (119)
+|.|+++| +..|+..+=-| ......+-.++|.++.+++|+- ...+..+--.||+|-.
T Consensus 2 dv~I~e~p-~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~--------p~~S~~~gI~~ddP~~ 58 (154)
T COG3449 2 DVEIIELP-PIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLL--------PEQSETLGIYQDDPDT 58 (154)
T ss_pred CceEEecC-CceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCC--------CCCceEEEEecCCCCC
Confidence 78999999 89999988888 7788899999999999999852 2335566667788853
No 4
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=88.47 E-value=1.7 Score=28.77 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=51.3
Q ss_pred ceeEEeCCCCcEEEEEEecccCChhh-HHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCCCCCeeeEEE
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDDNS-ISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLL 116 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~~~-~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw~ 116 (119)
+|+|+++| +.+++..+..|-..+.. +.+..++|.+.+...+.. .....++..-||.|..........++
T Consensus 2 ~~~i~~~p-~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~ 71 (155)
T PF06445_consen 2 EVEIVTLP-AFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS--------TDPGPIIGIYYDNPNITDDEEFRYDI 71 (155)
T ss_dssp CEEEEEEE-EEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC--------CSSSSEEEEEEECCTSSTGCEEEEEE
T ss_pred CcEEEEEC-CEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc--------cCCCcceeEEeccccccCCcceEEEE
Confidence 68999999 99999999999887777 888889999999887531 14556667778877543444454443
No 5
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=81.12 E-value=13 Score=24.38 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=48.9
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHH-HhhcCCcchhhhhccccCCCceEEEEeCCCC-CCCCCeeeEE
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKK-SLKNSTWESAIIFNNKISDDHLSVAGYNSPF-QNENRINEVL 115 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~-~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~-~~~~R~NEVw 115 (119)
..+....+| +..+++-+|-|-. +.+.+-...|.. +|.+.|+. ......+.. -.+.|. ..-.-.=|||
T Consensus 83 ~~~~~~~ip-~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~-------~~~~~~~E~-y~~~~~~~~~~~~~ei~ 151 (155)
T PF06445_consen 83 DGMESRTIP-AGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYE-------RRDGPDFEI-YLNDPDTDEEEYVTEIY 151 (155)
T ss_dssp TTSEEEEEE-CEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCE-------EESSEEEEE-EESSTTTTSCGEEEEEE
T ss_pred ceEEEEEEc-CcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCc-------cCCCCcEEE-ECCCCCCCCCceEEEEE
Confidence 888999999 8999999999977 677888899999 99999862 112222333 233333 2234455888
Q ss_pred EEe
Q 046324 116 LWF 118 (119)
Q Consensus 116 ~~~ 118 (119)
|++
T Consensus 152 iPi 154 (155)
T PF06445_consen 152 IPI 154 (155)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 6
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=76.31 E-value=23 Score=24.50 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=43.3
Q ss_pred ceeEEeCCCCcEEEEEEecccCChhhHHHHHHH-HHHHhhcCCcchhhhhccccCCCceEEEEeC-CCCCCCCCeeeEEE
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASA-LKKSLKNSTWESAIIFNNKISDDHLSVAGYN-SPFQNENRINEVLL 116 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~-L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd-~P~~~~~R~NEVw~ 116 (119)
.+....+| +.+++|..+-|. -+.+.+-... +.++|..+|++ ..+ ...+-.|. .|...-.-.=|||+
T Consensus 83 ~~~~~~ip-~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~--------~~~-~p~~E~Y~~~~~~~~~~~tei~i 150 (156)
T PRK10016 83 GVILTEIP-GGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQ--------MAP-KPCFEVYLNDGAEDGYWDIEMYV 150 (156)
T ss_pred CeEEEEEC-CCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCc--------cCC-CCCEEEeCCCCCCCCcEEEEEEE
Confidence 58899999 888999999995 4445555555 77899999864 111 22222344 23332221349999
Q ss_pred Ee
Q 046324 117 WF 118 (119)
Q Consensus 117 ~~ 118 (119)
++
T Consensus 151 PI 152 (156)
T PRK10016 151 PV 152 (156)
T ss_pred Ee
Confidence 87
No 7
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=63.72 E-value=38 Score=22.08 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=40.8
Q ss_pred ceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCC
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQ 106 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~ 106 (119)
.+.+..+| +..++..++.|-..+..+.+.-.+|.+.+...+... .......+..-|+.|..
T Consensus 1 ~~~i~~~~-~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 61 (158)
T smart00871 1 EVRIVELP-AFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLP------IGPSGPPYGVYYDDPDD 61 (158)
T ss_pred CCEEEEcC-CceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCC------CCCCccEEEEECCCCCC
Confidence 36788999 899999999998775556667777877777765320 01123455556666643
No 8
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=44.99 E-value=33 Score=19.07 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=24.5
Q ss_pred CcEEEEEEecccCChhhHHHHHHHHHHHhhcC
Q 046324 48 HKYVVVRRFGDFMDDNSISTQASALKKSLKNS 79 (119)
Q Consensus 48 ~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~ 79 (119)
+......+ +||.+..++.+.+.++...|...
T Consensus 14 Gkrk~~~k-~GF~TkkeA~~~~~~~~~~~~~g 44 (46)
T PF14657_consen 14 GKRKQKTK-RGFKTKKEAEKALAKIEAELENG 44 (46)
T ss_pred CCEEEEEc-CCCCcHHHHHHHHHHHHHHHHcC
Confidence 45554444 89999999999999999888765
No 9
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=43.91 E-value=1.2e+02 Score=21.66 Aligned_cols=40 Identities=28% Similarity=0.175 Sum_probs=35.0
Q ss_pred ceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCC
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNST 80 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g 80 (119)
.+.+.+++ +..++..++-|- .+..+.+-..+|...|...|
T Consensus 4 e~~~~~~~-~~~v~~ir~~~~-~~~~~~~~~~el~~~~~~~~ 43 (153)
T COG4978 4 EVVIKKLE-EIKVVGIRFTGI-PERLIEQVYSELCNFLKSNG 43 (153)
T ss_pred ccEEEeec-ceeEEEEEEecC-cHHHHHHHHHHHHHHHhhcC
Confidence 46788899 888888888888 88888999999999999987
No 10
>KOG3405 consensus RNA polymerase subunit K [Transcription]
Probab=43.31 E-value=8.3 Score=26.97 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=13.6
Q ss_pred CCccCcCcceEEEecCC
Q 046324 12 SAKITMTAPVLTNIIPS 28 (119)
Q Consensus 12 ~~ki~MT~PV~~~~~~~ 28 (119)
...|+|.+||++.....
T Consensus 79 AlQIsm~APvmVeLegE 95 (136)
T KOG3405|consen 79 ALQISMNAPVMVELEGE 95 (136)
T ss_pred HHHHhcCCCeEEecCCC
Confidence 46799999999998533
No 11
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=39.50 E-value=16 Score=24.26 Aligned_cols=14 Identities=21% Similarity=0.276 Sum_probs=10.1
Q ss_pred HHHHHHHHhhcCCc
Q 046324 68 QASALKKSLKNSTW 81 (119)
Q Consensus 68 ~~~~L~~~L~~~g~ 81 (119)
+..+.++.|.+.|+
T Consensus 24 qL~~~~k~La~~GL 37 (100)
T KOG4631|consen 24 QLETIQKKLAAKGL 37 (100)
T ss_pred cHHHHHHHHHHccc
Confidence 56667778888875
No 12
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=39.18 E-value=1.7e+02 Score=22.24 Aligned_cols=41 Identities=10% Similarity=0.119 Sum_probs=30.0
Q ss_pred ceeEEeCCCCcEEEEEEecccCChhhHHHHHHHH-HHHhhcCCcc
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASAL-KKSLKNSTWE 82 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L-~~~L~~~g~~ 82 (119)
+.....+| +.+.+|-+|.|-..+ +.+-...+ .++|-..|++
T Consensus 213 ~~~~~~Ip-~G~YAvF~~~G~~~~--l~~~~~~Iy~~WLP~sg~~ 254 (289)
T PRK15121 213 TGHPVMLQ-GGEYVMFTYEGLGTG--LQEFILTVYGTCMPMLNLT 254 (289)
T ss_pred CCceEeeC-CCCEEEEEEeCCHHH--HHHHHHHHHHHHCCCCCcc
Confidence 34678889 899999999987643 55555554 6789888864
No 13
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=36.61 E-value=1.2e+02 Score=19.67 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=33.1
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCC
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNST 80 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g 80 (119)
..+....+| +..+++.+|.| ...+.+.+-..+|..++..+|
T Consensus 83 ~~~~~~~~p-~~~y~~~~~~g-~~~~~~~~~~~~l~~~~~~~~ 123 (158)
T smart00871 83 EGVETKEIP-AGKYAVFTHKG-GSYDEIQETWEAIYGEWLPNS 123 (158)
T ss_pred CCceEEEEC-CCcEEEEEEcC-CCHHHHHHHHHHHHHhhcccC
Confidence 457889999 88899999998 346668888888988887776
No 14
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=34.43 E-value=40 Score=22.20 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=32.2
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCC
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNST 80 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g 80 (119)
+...+++.. +..-..++.++....++..+.++|.++|+..|
T Consensus 37 d~~~vEDlG--~~~r~~~~~a~~~G~dy~~~~~~L~~al~~~G 77 (93)
T PF07157_consen 37 DGPWVEDLG--RKARRIRVTAFFVGDDYEAQRDALIAALEAPG 77 (93)
T ss_pred CCcCeeecC--CCCcEEEEEEEEECCcHHHHHHHHHHHHcCCC
Confidence 445556655 44556677888888999999999999999987
No 15
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=33.69 E-value=1.2e+02 Score=25.18 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=45.7
Q ss_pred CcEEEEEEecccCChhhHHHHHHHHHHHhhcC-Ccchhhhhc-cccCCCceEEEEeCC--CCCCCCCeeeEEE
Q 046324 48 HKYVVVRRFGDFMDDNSISTQASALKKSLKNS-TWESAIIFN-NKISDDHLSVAGYNS--PFQNENRINEVLL 116 (119)
Q Consensus 48 ~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~-g~~~~~~~~-~~~~~~~~~~A~Yd~--P~~~~~R~NEVw~ 116 (119)
+.+|++.+=-||+...++.++.+-|.+++++. .+....-.. ...-...=|+.+||+ |+.+-.=..|.|+
T Consensus 182 gv~VgIVTAAGY~~a~kY~~RL~GLL~a~~~~~~Lt~~qk~~l~VMGGEsNYLfr~~~~~~~~L~~v~~~~W~ 254 (408)
T PF06437_consen 182 GVKVGIVTAAGYPGAEKYEERLHGLLDAFKDSTDLTPEQKSNLYVMGGESNYLFRYDPESPHGLEFVPREEWL 254 (408)
T ss_pred CCeEEEEeCCCCCChHHHHHHHHHHHHHHHhccCCCHHHhcCEEEecccceeEEEecCCCCCCeEEccHHhcc
Confidence 67999999999999999999999999999988 553222100 111223334557887 5776222345564
No 16
>COG4195 Phage-related replication protein [General function prediction only]
Probab=30.04 E-value=73 Score=23.99 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=28.8
Q ss_pred EEEEEEecccCC--------hhhHHHHHHHHHHHhhcCCcchhh
Q 046324 50 YVVVRRFGDFMD--------DNSISTQASALKKSLKNSTWESAI 85 (119)
Q Consensus 50 ~v~vr~F~G~~~--------~~~~~~~~~~L~~~L~~~g~~~~~ 85 (119)
.=||.+|-||+. ...-++.++.+.+.|+..|+.+.+
T Consensus 99 h~~vis~HGy~~~~~~~~lvGG~dR~~aa~i~~~L~~aGF~a~L 142 (208)
T COG4195 99 HDYVISLHGYADIESKQTLVGGTDRELAAHIARALQLAGFSAEL 142 (208)
T ss_pred ccEEEEeccccCCCCceeeecCccHHHHHHHHHHHhhCCccHHh
Confidence 468999999998 334578899999999999986433
No 17
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=27.78 E-value=1e+02 Score=24.52 Aligned_cols=36 Identities=6% Similarity=0.215 Sum_probs=24.2
Q ss_pred CChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCC
Q 046324 60 MDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQN 107 (119)
Q Consensus 60 ~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~ 107 (119)
++-.+.+.-.+++..+|++-|. +.|.+-.||.+||.
T Consensus 253 pS~anq~~~~~~i~~~~~~~G~------------d~fvfeAFdd~WK~ 288 (305)
T COG5309 253 PSVANQKIAVQEILNALRSCGY------------DVFVFEAFDDDWKA 288 (305)
T ss_pred CChhHHHHHHHHHHhhhhccCc------------cEEEeeeccccccC
Confidence 3444455555666666667662 46888889999996
No 18
>PRK10905 cell division protein DamX; Validated
Probab=26.32 E-value=1.3e+02 Score=24.27 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=33.8
Q ss_pred eeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCC
Q 046324 40 AHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNST 80 (119)
Q Consensus 40 V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g 80 (119)
|+...+. +...||..+|-|++-+.+++-+..|=+.|+..+
T Consensus 275 vy~TtRn-GkpWYVV~yG~YaSraeAk~AiakLPa~vQa~k 314 (328)
T PRK10905 275 VYETTRN-GQPWYVLVSGVYASKEEAKRAVSTLPADVQAKN 314 (328)
T ss_pred EEEeccC-CceEEEEEecCCCCHHHHHHHHHHCCHHHHhCC
Confidence 4455555 778999999999999999999999999998764
No 19
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.96 E-value=1e+02 Score=24.48 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=25.7
Q ss_pred EEEecccCChhhHHHHHHHHHHHhhcCC
Q 046324 53 VRRFGDFMDDNSISTQASALKKSLKNST 80 (119)
Q Consensus 53 vr~F~G~~~~~~~~~~~~~L~~~L~~~g 80 (119)
+|.|.|-.+..+..++++.+.+.|++.|
T Consensus 1 IRvYaGl~sa~~~~~rA~lav~EL~Rtg 28 (289)
T PF10081_consen 1 IRVYAGLDSADTPEARARLAVAELERTG 28 (289)
T ss_pred CeEEeccCcCCCHHHHHHHHHHHHHhcC
Confidence 4788999999999999999999999997
No 20
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=24.91 E-value=1.7e+02 Score=19.23 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=34.0
Q ss_pred CCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcC-CcchhhhhccccCCCceEEEEeCCC
Q 046324 45 LPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNS-TWESAIIFNNKISDDHLSVAGYNSP 104 (119)
Q Consensus 45 ~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~-g~~~~~~~~~~~~~~~~~~A~Yd~P 104 (119)
-| ...+-+++.|+. +.+.-.+.+++|.+.|++. | .+.+..+..-+|-|
T Consensus 54 ~P-~a~v~l~sig~~-~~~~n~~~s~~i~~~l~~~Lg----------Ip~~Riyi~f~d~~ 102 (114)
T PF01187_consen 54 DP-AAFVELKSIGGL-DPEQNKKYSAAITEFLEEELG----------IPPDRIYINFHDLP 102 (114)
T ss_dssp SS--EEEEEEESSSS-SHHHHHHHHHHHHHHHHHHHT------------GGGEEEEEEEET
T ss_pred CC-EEEEEEEEccCC-CHHHHHHHHHHHHHHHHHHhC----------CCcCceEEEEEECC
Confidence 45 567778888887 8888889999999999876 4 34566666656544
No 21
>PHA02763 hypothetical protein; Provisional
Probab=24.51 E-value=50 Score=21.79 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=16.7
Q ss_pred EEecccCChhhHHHHHHHHH
Q 046324 54 RRFGDFMDDNSISTQASALK 73 (119)
Q Consensus 54 r~F~G~~~~~~~~~~~~~L~ 73 (119)
.+||||-+-+.+..++++|.
T Consensus 62 v~~SGFe~VEeWl~eArrLh 81 (102)
T PHA02763 62 VKFSGFENVEEWLNEARRLH 81 (102)
T ss_pred hhhcchhhHHHHHHHHHHHh
Confidence 36999999999988888765
No 22
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=24.06 E-value=2.6e+02 Score=19.66 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=26.2
Q ss_pred EEEEEEecccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCC
Q 046324 50 YVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQN 107 (119)
Q Consensus 50 ~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~ 107 (119)
.+.|.-=-+|+.-.....-.+.++++|+..|+ . ..-.--.++|||+.
T Consensus 26 ~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~Gv----------~-~V~V~i~~~p~Wt~ 72 (146)
T TIGR02159 26 GVVVKFTPTYSGCPALEVIRQDIRDAVRALGV----------E-VVEVSTSLDPPWTT 72 (146)
T ss_pred EEEEEEEeCCCCCchHHHHHHHHHHHHHhcCC----------C-eEEEeEeeCCCCCh
Confidence 34444444555555555555566666766563 1 22233479999984
No 23
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=22.72 E-value=1e+02 Score=17.59 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=11.6
Q ss_pred ccCChhhHHHHHHHHHHHhhc
Q 046324 58 DFMDDNSISTQASALKKSLKN 78 (119)
Q Consensus 58 G~~~~~~~~~~~~~L~~~L~~ 78 (119)
|+ +++.+.+++..+++.|.+
T Consensus 24 g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 24 GY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp T---HHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHh
Confidence 44 566666777777666654
No 24
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=22.30 E-value=1.5e+02 Score=18.60 Aligned_cols=30 Identities=10% Similarity=0.211 Sum_probs=22.5
Q ss_pred EEEEEecccCChhhHHHHHHHHHHHhhcCC
Q 046324 51 VVVRRFGDFMDDNSISTQASALKKSLKNST 80 (119)
Q Consensus 51 v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g 80 (119)
+.+.+++|..+.+++.+-...+.+.++..|
T Consensus 2 il~v~~~g~~t~ed~~~~~~~~~~~~~~~~ 31 (109)
T PF11964_consen 2 ILAVRVSGKLTEEDYKELLPALEELIADHG 31 (109)
T ss_dssp -EEEEEEEEE-HHHHHHHHHHHHHHHTTSS
T ss_pred EEEEEEeeeeCHHHHHHHHHHHHHHHhcCC
Confidence 346778899999999998888888877554
No 25
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=21.98 E-value=1.5e+02 Score=17.33 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCCCCCeeeEEEE
Q 046324 66 STQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLW 117 (119)
Q Consensus 66 ~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw~~ 117 (119)
.-++..++..|++.|+..-+. ....+.+ ++| +|...+ =+||++
T Consensus 9 ~~ea~~i~~~L~~~gI~~~v~---~~~~~~~--~g~-~g~~~~---~~v~V~ 51 (67)
T PF09413_consen 9 PIEAELIKGLLEENGIPAFVK---NEHMSGY--AGE-PGTGGQ---VEVYVP 51 (67)
T ss_dssp HHHHHHHHHHHHHTT--EE-----S----SS------S--SSS---EEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEE---CCccchh--hcc-cCccCc---eEEEEC
Confidence 347888999999999742221 1112222 566 665533 567765
No 26
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=21.41 E-value=1.2e+02 Score=21.22 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=28.1
Q ss_pred cccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCC
Q 046324 57 GDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQ 106 (119)
Q Consensus 57 ~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~ 106 (119)
+|-+-...-.+++++|++.|++.+. +-..+....|.+|+.
T Consensus 62 ~~SPL~~~t~~q~~~l~~~L~~~~~----------~~~v~~amry~~P~i 101 (159)
T cd03411 62 GGSPLNEITRAQAEALEKALDERGI----------DVKVYLAMRYGPPSI 101 (159)
T ss_pred CCCccHHHHHHHHHHHHHHHhccCC----------CcEEEehHhcCCCCH
Confidence 3577777888999999999987531 112455567888875
No 27
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=20.21 E-value=1.1e+02 Score=23.24 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=25.9
Q ss_pred EEEecccCChhhH-HHHHHHHHHHhhcCCcc
Q 046324 53 VRRFGDFMDDNSI-STQASALKKSLKNSTWE 82 (119)
Q Consensus 53 vr~F~G~~~~~~~-~~~~~~L~~~L~~~g~~ 82 (119)
..-|||.++|.++ ...+..+.++|++.|+.
T Consensus 3 ~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~ 33 (315)
T TIGR01205 3 AVLFGGKSAEHEISLVSAAAVLKALRDLGYD 33 (315)
T ss_pred EEEeCCCCCCeeeeHHHHHHHHHHHhhcCCE
Confidence 4569999999986 88899999999999863
Done!