Query 046324
Match_columns 119
No_of_seqs 103 out of 418
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 19:10:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8j_A Heme-binding protein 2; 100.0 4E-38 1.4E-42 234.9 10.9 109 1-118 72-199 (212)
2 4b0y_A Heme-binding protein 2; 100.0 7.5E-38 2.6E-42 235.4 10.1 109 1-118 91-218 (227)
3 2gov_A P22HBP, heme-binding pr 100.0 1.2E-37 4.1E-42 229.6 9.1 108 1-118 67-194 (195)
4 3e0h_A Uncharacterized protein 95.5 0.056 1.9E-06 36.3 7.1 69 38-118 85-155 (158)
5 1jyh_A DNA gyrase inhibitory p 95.4 0.02 6.7E-07 37.2 4.4 69 38-118 82-152 (157)
6 3lur_A Putative bacterial tran 87.6 4.6 0.00016 26.8 9.3 71 38-119 85-157 (158)
7 1d5y_A ROB transcription facto 87.1 2.9 0.0001 30.3 7.7 69 38-118 210-285 (292)
8 3gk6_A Integron cassette prote 79.4 12 0.00042 25.4 8.9 66 38-119 103-170 (170)
9 3b49_A LIN2189 protein; BIG 86 77.7 7.6 0.00026 27.2 6.5 48 33-81 18-71 (211)
10 1r8e_A Multidrug-efflux transp 76.3 18 0.00061 26.1 8.4 68 39-118 206-276 (278)
11 3b49_A LIN2189 protein; BIG 86 72.6 15 0.0005 25.7 6.9 70 38-118 136-210 (211)
12 3e0h_A Uncharacterized protein 58.8 34 0.0012 22.1 8.1 42 39-81 8-51 (158)
13 1jyh_A DNA gyrase inhibitory p 54.8 35 0.0012 21.1 6.0 41 39-81 2-42 (157)
14 1r8e_A Multidrug-efflux transp 45.7 31 0.0011 24.7 4.7 40 38-80 122-163 (278)
15 3ml6_A Chimeric complex betwee 35.6 48 0.0016 25.9 4.6 81 38-118 21-127 (385)
16 4fu0_A D-alanine--D-alanine li 31.8 51 0.0017 24.7 4.1 33 49-82 4-37 (357)
17 2q3l_A Uncharacterized protein 30.0 99 0.0034 19.8 4.8 41 39-80 10-50 (126)
18 3kh7_A Thiol:disulfide interch 29.2 93 0.0032 20.4 4.7 39 38-79 134-172 (176)
19 1d5y_A ROB transcription facto 26.4 1.7E+02 0.0059 20.6 7.9 41 38-79 124-168 (292)
20 1kng_A Thiol:disulfide interch 24.9 1.2E+02 0.0041 18.7 4.5 37 38-77 119-155 (156)
21 2ww6_A Fibritin, T4 fibritin; 23.4 37 0.0013 16.6 1.2 19 43-61 4-22 (27)
22 2ook_A Hypothetical protein; s 22.4 1.6E+02 0.0054 18.8 5.0 38 40-78 11-48 (127)
23 2lfv_A Protein DAMX; cell divi 25.6 22 0.00074 22.9 0.0 34 45-79 58-91 (106)
No 1
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=4e-38 Score=234.89 Aligned_cols=109 Identities=31% Similarity=0.361 Sum_probs=98.9
Q ss_pred CccccCCCCCCCCccCcCcceEEEecCCCC--------CCccccC-----------CceeEEeCCCCcEEEEEEecccCC
Q 046324 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSIN--------GPFCNSQ-----------LQAHPIKLPKHKYVVVRRFGDFMD 61 (119)
Q Consensus 1 L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~--------~~f~~p~-----------~~V~i~~~p~~~~v~vr~F~G~~~ 61 (119)
||+||+|+|.++++|+||+||++++.++.. .+|++|. ++|+|+++| +++||||+|+||++
T Consensus 72 L~~YI~G~N~~~~kI~MTaPV~t~~~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p-~~~vav~~F~G~~~ 150 (212)
T 3r8j_A 72 LNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRA-EMTVFVRSFDGFSS 150 (212)
T ss_dssp HHHHHTTCBTTCCCCCCBSCEEEEEECTTSTTSCEEEEEEEECCHHHHSSCCCBSSTTEEEEEEC-CEEEEEEEESSCCC
T ss_pred HHHHhhcCCCCCCccccccCEEEEEecCCCcccCceEEEEEEcChHHccCCCCCCCCceEEEEeC-CEEEEEEEeCCcCC
Confidence 789999999999999999999999876621 1566663 899999999 99999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCCCCCeeeEEEEe
Q 046324 62 DNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWF 118 (119)
Q Consensus 62 ~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw~~~ 118 (119)
++++.+++++|+++|+++|+ .+..+.|++|+|||||++++|||||||++
T Consensus 151 ~~~~~~~~~~L~~~L~~~g~--------~~~~~~y~~A~Yd~P~t~~~RrNEVwi~~ 199 (212)
T 3r8j_A 151 AQKNQEQLLTLASILREDGK--------VFDEKVYYTAGYNSPVKLLNRNNEVWLIQ 199 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--------CBCSSCEEEEESSSSSCCSSSCEEEEEEB
T ss_pred HHHHHHHHHHHHHHHHhCCC--------ccCCCcEEEEEeCCCCCcCCceeEEEEEe
Confidence 99999999999999999985 36778899999999999999999999986
No 2
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.5e-38 Score=235.44 Aligned_cols=109 Identities=31% Similarity=0.361 Sum_probs=95.7
Q ss_pred CccccCCCCCCCCccCcCcceEEEecCCCC--------CCccccC-----------CceeEEeCCCCcEEEEEEecccCC
Q 046324 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSIN--------GPFCNSQ-----------LQAHPIKLPKHKYVVVRRFGDFMD 61 (119)
Q Consensus 1 L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~--------~~f~~p~-----------~~V~i~~~p~~~~v~vr~F~G~~~ 61 (119)
||+||+|+|.++++|+||+||++++.++.. .+|++|. ++|+|+++| +++||||+|+||++
T Consensus 91 L~~YI~G~N~~~~kI~MTaPV~t~~~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p-~~~vaVr~FsG~~~ 169 (227)
T 4b0y_A 91 LNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRA-EMTVFVRSFDGFSS 169 (227)
T ss_dssp HHHHHHTCBTTCCCCCCBSCEEEEEECCC--CCCEEEEEEEECCGGGSSSCCCBSSSSEEEEEEC-CEEEEEEEESSCCC
T ss_pred HHHHhhcCCCCCCccccccCEEEEEecCCCcccCceEEEEEEcChhhccCCCCCCCCceEEEEeC-CEEEEEEEecCcCC
Confidence 789999999999999999999999876621 1566664 899999999 99999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCCCCCeeeEEEEe
Q 046324 62 DNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWF 118 (119)
Q Consensus 62 ~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw~~~ 118 (119)
++++.+++++|+++|+++|+ .+..+.|++|+|||||++++|||||||+.
T Consensus 170 ~~~~~~~~~~L~~~L~~~g~--------~~~~~~y~~A~Yd~P~t~~~RrNEVwi~~ 218 (227)
T 4b0y_A 170 AQKNQEQLLTLASILREDGK--------VFDEKVYYTAGYNSPVKLLNRNNEVWLIQ 218 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--------CBCSSCEEEEECC---CCCSSCEEEEEEB
T ss_pred HHHHHHHHHHHHHHHHhCCC--------ccCCCcEEEEEeCCCCCcCCceeEEEEEE
Confidence 99999999999999999985 36778899999999999999999999986
No 3
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=1.2e-37 Score=229.59 Aligned_cols=108 Identities=24% Similarity=0.360 Sum_probs=97.8
Q ss_pred CccccCCCCCCCCccCcCcceEEEecCCCCC---------CccccC-----------CceeEEeCCCCcEEEEEEecccC
Q 046324 1 LYSYFQGNNDQSAKITMTAPVLTNIIPSING---------PFCNSQ-----------LQAHPIKLPKHKYVVVRRFGDFM 60 (119)
Q Consensus 1 L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~---------~f~~p~-----------~~V~i~~~p~~~~v~vr~F~G~~ 60 (119)
||+||+|+|.++++|+||+||++++.+. ++ +|++|. ++|+|+++| ++++||++|+|++
T Consensus 67 L~~YI~G~N~~~~kI~MTaPV~~~~~p~-~~~~~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p-~~~vav~~F~G~~ 144 (195)
T 2gov_A 67 IMKYVGGTNDKGVGMGMTVPVSFAVFPN-EDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEERE-GITVYSTQFGGYA 144 (195)
T ss_dssp HHHHHHTCBTTCCCCCCCCCEEEEEEEC-TTSCEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECC-SCEEEEEEEESCC
T ss_pred HHHHhccCCCCCCCcccccCEEEEEcCC-CCCCcCceEEEEEEcchhcccCCCCCCCCceEEEEeC-CeEEEEEEECCcc
Confidence 7899999999999999999999988665 32 466664 899999999 9999999999999
Q ss_pred ChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCCCCCeeeEEEEe
Q 046324 61 DDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWF 118 (119)
Q Consensus 61 ~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw~~~ 118 (119)
++.++.+++++|+++|+++|+ .+..+.|++|+|||||++++|||||||+.
T Consensus 145 ~~~~~~~~~~~L~~~L~~~g~--------~~~~~~~~~a~Yn~P~~~~~RrNEV~i~~ 194 (195)
T 2gov_A 145 KEADYVAHATQLRTTLEGTPA--------TYQGDVYYCAGYDPPMKPYGRRNEVWLVK 194 (195)
T ss_dssp CHHHHHHHHHHHHHHTTTSSC--------CEEEEEEEEEESSCCSSSSCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCC--------cccCCcEEEEEeCCCCCcCCceeEEEEEe
Confidence 999999999999999999985 25667899999999999999999999985
No 4
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=95.52 E-value=0.056 Score=36.27 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=50.9
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCC-C-CCCeeeEE
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQ-N-ENRINEVL 115 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~-~-~~R~NEVw 115 (119)
..+.+..+| +.++++.++.|-..+ +.+--.+|.++|.++|+. .. +..+-.-+|+|.. . -..+.|||
T Consensus 85 ~~~~~~~ip-~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~--------~~-~~~~E~Y~~~p~~~~~~~~~tei~ 152 (158)
T 3e0h_A 85 GRVVTGLTP-SGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD--------LS-GEAYEIYLDNPAETAPDQLRTRVS 152 (158)
T ss_dssp TTBEEEECC-CEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC--------EE-EEEEEEECSCTTSSCGGGCEEEEE
T ss_pred CceEEEEeC-CEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC--------cC-CCEEEEEeCCCCCCCHHHhEEEEE
Confidence 678999999 899999999996543 677788888999999863 12 2222223467764 2 56789999
Q ss_pred EEe
Q 046324 116 LWF 118 (119)
Q Consensus 116 ~~~ 118 (119)
+++
T Consensus 153 ipv 155 (158)
T 3e0h_A 153 LML 155 (158)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 5
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=95.41 E-value=0.02 Score=37.22 Aligned_cols=69 Identities=10% Similarity=-0.067 Sum_probs=47.5
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHH-HHhhcCCcchhhhhccccCCCceEEEEeCC-CCCCCCCeeeEE
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALK-KSLKNSTWESAIIFNNKISDDHLSVAGYNS-PFQNENRINEVL 115 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~-P~~~~~R~NEVw 115 (119)
+.+.+.++| +.+++|..|.|... .+.+--..|. ++|.+.|+. ..+...+-.|.. |......+-|||
T Consensus 82 ~~~~~~~ip-~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---------~~~~~~~E~Y~~~~~~~~~~~tei~ 149 (157)
T 1jyh_A 82 EGVILTEIT-GGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---------MLPKPCFEVYLNNGAEDGYWDIEMY 149 (157)
T ss_dssp TTCEEEEEC-CEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---------ECSSCEEEEECSCHHHHSSEEEEEE
T ss_pred CCeEEEEeC-CCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---------cCCCceEEEecCCCCCcccEEEEEE
Confidence 468888999 99999999999763 3556667775 899998853 122244556732 222245567999
Q ss_pred EEe
Q 046324 116 LWF 118 (119)
Q Consensus 116 ~~~ 118 (119)
|++
T Consensus 150 ipi 152 (157)
T 1jyh_A 150 VAV 152 (157)
T ss_dssp EEE
T ss_pred EEe
Confidence 987
No 6
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=87.58 E-value=4.6 Score=26.84 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=47.0
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHH-HHHhhcCCcchhhhhccccCCCceEEEEeCCCCCC-CCCeeeEE
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASAL-KKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQN-ENRINEVL 115 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~-~~R~NEVw 115 (119)
..+...++| +.+.+|-++.|-..+ .+.+--..+ .++|...|++ ....+.+-.|+.+-.. -+-.=|||
T Consensus 85 ~~~~~~~ip-~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~---------~~~~p~fE~Y~~~~~~~~~~~~ei~ 153 (158)
T 3lur_A 85 AKYDVITLA-SSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT---------VKSAPFFELYQDGDTTSEKYITEIW 153 (158)
T ss_dssp GGSEEEEEC-CEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT---------BCSSCEEEEECSSCTTSTTCEEEEE
T ss_pred CCcEEEEEC-CceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe---------eCCCccEEEECCCCCCCcceEEEEE
Confidence 567889999 999999999996543 444455554 4579888753 2233455568764221 34466999
Q ss_pred EEeC
Q 046324 116 LWFD 119 (119)
Q Consensus 116 ~~~~ 119 (119)
|++.
T Consensus 154 iPI~ 157 (158)
T 3lur_A 154 MPVK 157 (158)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9973
No 7
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=87.09 E-value=2.9 Score=30.32 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=45.5
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHH-HHhhcCCcchhhhhccccCCCceEEEEeC---CCC-CCC--CC
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALK-KSLKNSTWESAIIFNNKISDDHLSVAGYN---SPF-QNE--NR 110 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd---~P~-~~~--~R 110 (119)
+.+...++| +.+++|-++.|- .+.+.+-...|. ++|.+.|++ . ...+.+-.|. .|+ ..- .=
T Consensus 210 ~~~~~~~iP-~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~--------~-~~~p~~E~Y~~~~~~~~~~~~~~~ 277 (292)
T 1d5y_A 210 LTGHPVMLQ-GGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLT--------R-RKGQDIERYYPAEDAKAGDRPINL 277 (292)
T ss_dssp TTCEEEEEC-CEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCE--------E-CSSCEEEEECGGGC----CCSCEE
T ss_pred CcceEEEEC-CCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCc--------c-CCCCcEEEEeeccccCCCCCCCce
Confidence 568889999 899999999994 456777778885 899998853 1 1223344565 332 221 12
Q ss_pred eeeEEEEe
Q 046324 111 INEVLLWF 118 (119)
Q Consensus 111 ~NEVw~~~ 118 (119)
.=||||++
T Consensus 278 ~tEI~iPI 285 (292)
T 1d5y_A 278 RCELLIPI 285 (292)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 34999987
No 8
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=79.39 E-value=12 Score=25.36 Aligned_cols=66 Identities=9% Similarity=-0.037 Sum_probs=44.5
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCC--cchhhhhccccCCCceEEEEeCCCCCCCCCeeeEE
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNST--WESAIIFNNKISDDHLSVAGYNSPFQNENRINEVL 115 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw 115 (119)
..+...++| +.+.+|-++.|-..+ .+.+--+.+..+|-..| ++ ....+-+-.|+... .-|||
T Consensus 103 ~g~~~~~IP-~g~YAVF~~~G~~p~-~i~~~w~~I~~WlP~sg~~y~---------~~~~pdfE~Y~~~~-----~~eI~ 166 (170)
T 3gk6_A 103 SESVKTKVS-SGKYVTFSATGEMPQ-VVIDLWNEVWNYFASEHCPHK---------RAYTTDFEYYKSAN-----TVEIS 166 (170)
T ss_dssp TTCEEEEEC-CEEEEEEEEESSTTH-HHHHHHHHHHHHHC---CCCC---------BCCSEEEEECCSSS-----EEEEE
T ss_pred CCcEEEEEC-CCCEEEEEecCCCHH-HHHHHHHHHHHhhhhcCCcce---------ecCcCCEEEECCCC-----eEEEE
Confidence 468889999 999999999995433 56666666766888887 42 23345555686642 67999
Q ss_pred EEeC
Q 046324 116 LWFD 119 (119)
Q Consensus 116 ~~~~ 119 (119)
|++.
T Consensus 167 IpI~ 170 (170)
T 3gk6_A 167 IAVR 170 (170)
T ss_dssp EEBC
T ss_pred EEEC
Confidence 9873
No 9
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=77.67 E-value=7.6 Score=27.23 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=38.6
Q ss_pred ccccCCceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHh------hcCCc
Q 046324 33 FCNSQLQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSL------KNSTW 81 (119)
Q Consensus 33 f~~p~~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L------~~~g~ 81 (119)
+.+|+-++.|+++| +..++..+..|-..+..+.+...+|...+ .+.|+
T Consensus 18 ~y~~~~~v~i~~~p-~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~ 71 (211)
T 3b49_A 18 FYAPKRKPERIFVP-EMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGET 71 (211)
T ss_dssp HHCCCSSCEEEEEE-EEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred ccCCCCCcEEEEEC-CeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35556679999999 89999888888665557788889999988 88774
No 10
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=76.25 E-value=18 Score=26.06 Aligned_cols=68 Identities=7% Similarity=-0.007 Sum_probs=45.2
Q ss_pred ceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCC---CCCeeeEE
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQN---ENRINEVL 115 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~---~~R~NEVw 115 (119)
.+.+..+| +..+++..+.|-. +.+.+-...|.++|.++|+. .. +..+---++.|+.. -.-.-|||
T Consensus 206 ~~~~~~lp-~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~--------~~-g~~~E~y~~~~~~~~~~~~~~teI~ 273 (278)
T 1r8e_A 206 DMEITTIP-KGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT--------VV-SDVYELIIPIHYSPKKQEEYRVEMK 273 (278)
T ss_dssp TSEEEEEC-SEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC--------EE-EEEEEEEEESCCCSSSCCCEEEEEE
T ss_pred CceEeecC-CceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc--------cC-CCeEEEEeecccccCChhheEEEEE
Confidence 47888999 8888898888844 44566778888999999863 22 22222223345442 23457999
Q ss_pred EEe
Q 046324 116 LWF 118 (119)
Q Consensus 116 ~~~ 118 (119)
+++
T Consensus 274 iPv 276 (278)
T 1r8e_A 274 IRI 276 (278)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
No 11
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=72.56 E-value=15 Score=25.71 Aligned_cols=70 Identities=7% Similarity=-0.018 Sum_probs=46.0
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCC--CceEEEEe-CCCCCC--CCCee
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISD--DHLSVAGY-NSPFQN--ENRIN 112 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~--~~~~~A~Y-d~P~~~--~~R~N 112 (119)
..|.+.++| +..+++..+-|--. ++.+-...|.++|.++|+. ... +...+-.| +.|... -.-+=
T Consensus 136 ~~v~~~~ip-~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~--------~~~~~~~~~~EiY~~dp~~~~~~~~~t 204 (211)
T 3b49_A 136 SRVKLVRFE-EGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLR--------NDTGAIRKHHEIYLSDPRKANPEKMKT 204 (211)
T ss_dssp TTCEEEEEE-EEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCC--------BCBTTTBCEEEEECSCTTTSCGGGCEE
T ss_pred ccceEEEeC-CceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCc--------cccCCCCcEEEEEeCCCCCCChHHeEE
Confidence 468999999 88888888888654 3556677788999999862 111 12233334 666542 23356
Q ss_pred eEEEEe
Q 046324 113 EVLLWF 118 (119)
Q Consensus 113 EVw~~~ 118 (119)
|||+++
T Consensus 205 ei~ipV 210 (211)
T 3b49_A 205 ILRLPV 210 (211)
T ss_dssp EEEEEB
T ss_pred EEEEEe
Confidence 888886
No 12
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=58.78 E-value=34 Score=22.10 Aligned_cols=42 Identities=10% Similarity=-0.003 Sum_probs=30.3
Q ss_pred ceeEEeCCCCcEEEEEEecccCCh--hhHHHHHHHHHHHhhcCCc
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDD--NSISTQASALKKSLKNSTW 81 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~--~~~~~~~~~L~~~L~~~g~ 81 (119)
+|+|+++| +.+|+..+..|-..+ ..+.+--.+|.+.+...|+
T Consensus 8 ~v~I~~~p-~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l 51 (158)
T 3e0h_A 8 VCELKELA-PVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGK 51 (158)
T ss_dssp CEEEEEEC-CCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccEEEeeC-CceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999 999999999886422 1233445667888887774
No 13
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=54.76 E-value=35 Score=21.07 Aligned_cols=41 Identities=5% Similarity=-0.077 Sum_probs=28.7
Q ss_pred ceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCCc
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTW 81 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~ 81 (119)
+++|++.| +..++..+..|-.. +.+.+--.+|.+.+...++
T Consensus 2 ~~~i~~~~-~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~ 42 (157)
T 1jyh_A 2 NYEIKQEE-KRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNI 42 (157)
T ss_dssp CCEEEEEC-CEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeC-CeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCC
Confidence 47899999 89888887776432 3455566677777776663
No 14
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=45.66 E-value=31 Score=24.74 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=26.9
Q ss_pred CceeEEeCCCCcEEEEEEe-cccCChhhH-HHHHHHHHHHhhcCC
Q 046324 38 LQAHPIKLPKHKYVVVRRF-GDFMDDNSI-STQASALKKSLKNST 80 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F-~G~~~~~~~-~~~~~~L~~~L~~~g 80 (119)
..|.|++.| +..++..+. .|-.. .+ .+-..+|.+.+.+.|
T Consensus 122 ~~v~I~~~p-~~~v~~~~~~~~~~~--~i~~~~~~~l~~~~~~~~ 163 (278)
T 1r8e_A 122 GEVFVLDEE-EIRIIQTEAEGIGPE--NVLNASYSKLKKFIESAD 163 (278)
T ss_dssp TCCEEEEEC-CEEEEEEECTTCCTT--TCCGGGGHHHHHHHHHHH
T ss_pred CceEEEEcC-CeEEEEeecCCCChH--hHHHHHHHHHHHHHHHcC
Confidence 468999999 899888887 55332 22 233456777777765
No 15
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=35.58 E-value=48 Score=25.86 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=46.8
Q ss_pred CceeEEeCCCCcEEEEEEecccC-------C--hhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEE--------
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFM-------D--DNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAG-------- 100 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~-------~--~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~-------- 100 (119)
..|.+++..-..+.|-..|-|.- . +-.-++++..|.+.|-+.|+.-.+...+.|.++.||..+
T Consensus 21 ~Gl~i~dr~~~~~~~~~~F~G~elVdWL~~~~~~~~~R~eA~~~g~~Ll~~G~i~hv~~~~~F~d~~~y~f~~~~~~~~~ 100 (385)
T 3ml6_A 21 SGLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLSGGPRP 100 (385)
T ss_dssp SSSCCEEECCSSCCEEEEEEHHHHHHHHHHTCCSCSSHHHHHHHHHHHHHHSSEEESSSCSSCCSSSEEEECCCCC----
T ss_pred CCceeEeeEECcEECCCeEEhHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCcEEEcCCcceecCcceEEeeccccccCc
Confidence 34555554423567777887641 1 112367899999999999884333222456666554321
Q ss_pred eC---CCC---C---CCCCeeeEEEEe
Q 046324 101 YN---SPF---Q---NENRINEVLLWF 118 (119)
Q Consensus 101 Yd---~P~---~---~~~R~NEVw~~~ 118 (119)
+. ||| + +.-++|||.+.+
T Consensus 101 ~s~~~~~~~~~~~~gi~y~knEi~vdV 127 (385)
T 3ml6_A 101 YSPQPPPYHELEFGGSGGSRNELFLDV 127 (385)
T ss_dssp --CCCCCCEEBCSSSBCCCCCEEEEEE
T ss_pred cCCCCCCchhccccCCccccceEEEEE
Confidence 12 245 2 346799998765
No 16
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=31.78 E-value=51 Score=24.74 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=25.5
Q ss_pred cEEEEEEecccCChhhHHH-HHHHHHHHhhcCCcc
Q 046324 49 KYVVVRRFGDFMDDNSIST-QASALKKSLKNSTWE 82 (119)
Q Consensus 49 ~~v~vr~F~G~~~~~~~~~-~~~~L~~~L~~~g~~ 82 (119)
++|+|. |||.+.|.++.- -+....++|++.|++
T Consensus 4 kkv~vl-~GG~S~E~evSl~Sa~~v~~aL~~~gy~ 37 (357)
T 4fu0_A 4 KKIAVI-FGGNSTEYEVSLQSASAVFENINTNKFD 37 (357)
T ss_dssp EEEEEE-EECSSTTHHHHHHHHHHHHHHSCTTTEE
T ss_pred CEEEEE-ECCCccchHHHHHHHHHHHHHHhHhCCE
Confidence 567665 999999988753 366778899998864
No 17
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=30.03 E-value=99 Score=19.76 Aligned_cols=41 Identities=5% Similarity=0.017 Sum_probs=33.1
Q ss_pred ceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCC
Q 046324 39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNST 80 (119)
Q Consensus 39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g 80 (119)
-+.+...+ +..+...+.+|-.|.+++.+-...|.+.|++.+
T Consensus 10 mi~i~~~~-~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~ 50 (126)
T 2q3l_A 10 AIGIERSQ-DDFYLAFKAVGKLTHEDYEQMTPLLESALAGIK 50 (126)
T ss_dssp EEEEEEET-TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCC
T ss_pred eEEEEEcC-CCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCC
Confidence 35566666 777889999999999999988888888888765
No 18
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=29.17 E-value=93 Score=20.37 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=29.3
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcC
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNS 79 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~ 79 (119)
|.+.|.... +..++ +|.|..+.+.+.+.+.+|.+.|...
T Consensus 134 P~~~lid~~-G~i~~--~~~g~~~~~~l~~~l~~~l~~l~~~ 172 (176)
T 3kh7_A 134 PETYLIDKQ-GIIRH--KIVGVVDQKVWREQLAPLYQQLLDE 172 (176)
T ss_dssp CEEEEECTT-CBEEE--EEESCCCHHHHHHHTHHHHHHHHC-
T ss_pred CeEEEECCC-CeEEE--EEcCCCCHHHHHHHHHHHHHHHhhc
Confidence 667777766 55543 7889999988888888888887654
No 19
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=26.36 E-value=1.7e+02 Score=20.58 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=29.9
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHH----HHHHHHHHHhhcC
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSIS----TQASALKKSLKNS 79 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~----~~~~~L~~~L~~~ 79 (119)
.+++|++.| +..++..+..|-..++.+. .....|++.+...
T Consensus 124 m~~~I~~~~-~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~ 168 (292)
T 1d5y_A 124 PEHKFVTLE-DTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN 168 (292)
T ss_dssp CCEEEEEEC-CEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeC-CeEEeeEEeeeccccccccccchhhhHHHHHHHhcc
Confidence 478999999 9999988888865544443 5566777777654
No 20
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=24.94 E-value=1.2e+02 Score=18.72 Aligned_cols=37 Identities=3% Similarity=-0.050 Sum_probs=25.4
Q ss_pred CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhh
Q 046324 38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLK 77 (119)
Q Consensus 38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~ 77 (119)
|.+.+.... +..+ .++.|..+.+.+.+..++|.+.|.
T Consensus 119 P~~~~id~~-G~i~--~~~~g~~~~~~l~~~l~~~l~~~~ 155 (156)
T 1kng_A 119 PETFVVGRE-GTIV--YKLVGPITPDNLRSVLLPQMEKAL 155 (156)
T ss_dssp CEEEEECTT-SBEE--EEEESCCCHHHHHHTHHHHHHHHC
T ss_pred CeEEEEcCC-CCEE--EEEeCCCCHHHHHHHHHHHHHHHh
Confidence 656666655 5544 367898888888887777766654
No 21
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=23.35 E-value=37 Score=16.60 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=13.7
Q ss_pred EeCCCCcEEEEEEecccCC
Q 046324 43 IKLPKHKYVVVRRFGDFMD 61 (119)
Q Consensus 43 ~~~p~~~~v~vr~F~G~~~ 61 (119)
.+-|+....|||++|-|..
T Consensus 4 ~eAP~Dg~~Yvr~dg~WV~ 22 (27)
T 2ww6_A 4 PEAPRDAQAYVRKFGEWVL 22 (27)
T ss_dssp BCCCSSSCEEEEETTEEEE
T ss_pred ccCCcCcceeEEEcCeEEE
Confidence 3445567899999987753
No 22
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=22.43 E-value=1.6e+02 Score=18.77 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=31.9
Q ss_pred eeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhc
Q 046324 40 AHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKN 78 (119)
Q Consensus 40 V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~ 78 (119)
+.+.... +..+...+.+|-.|.+++.+-...|.+.|++
T Consensus 11 i~i~~~~-~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~ 48 (127)
T 2ook_A 11 IGINRIE-SVFFVTLKAIGTLTHEDYLVITPMLEGALSQ 48 (127)
T ss_dssp EEEEEET-TEEEEEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcC-CCCEEEEEEeeeECHHHHHHHHHHHHHHHhh
Confidence 4566666 6778899999999999999888888888888
No 23
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=25.62 E-value=22 Score=22.86 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=29.8
Q ss_pred CCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcC
Q 046324 45 LPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNS 79 (119)
Q Consensus 45 ~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~ 79 (119)
.. +..-||..+|-|++.+.+.+-+..|-+.|...
T Consensus 58 rn-Gk~WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~ 91 (106)
T 2lfv_A 58 RN-GQPWYVLVSGVYASKEEAKKAVSTLPADVQAK 91 (106)
Confidence 45 67899999999999999999999998888765
Done!