Your job contains 1 sequence.
>046325
ENGKKKKKKRHQTKQETKILMAQAHAEKIEEDIVNNQEKEIMKINNNTTSNNNNGNISTS
SSSASAPFKFNVQAPEFVPRSHTQMPISGYYYPCFQYIGGTATGSADWIFVGDQEPVYVI
SSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVI
GSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLP
EDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAV
EKLNDERNWRKGLRVRVLLRCSPKSVLKTKKSEFEGILDDEEADASEDSSHPNNQESVAE
NNNVEENSGGSKKGWARGRGKGRGRAQSHNSRSLLTPPPQSSNASQNEASAKQTFKGPRM
PDVTQIMALHFLKAGNDQLTRQ
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046325
(442 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2089508 - symbol:LARP6c "La related protein 6c... 851 3.4e-101 3
TAIR|locus:2051734 - symbol:LARP6b "AT2G43970" species:37... 502 6.9e-54 3
TAIR|locus:2170478 - symbol:LARP6a "La related protein 6a... 404 4.6e-40 2
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp... 231 3.0e-19 1
UNIPROTKB|F1NJ86 - symbol:LARP7 "Uncharacterized protein"... 227 9.2e-19 1
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp... 231 8.1e-17 1
UNIPROTKB|E1BQG3 - symbol:LARP7 "Uncharacterized protein"... 227 2.7e-16 1
MGI|MGI:107634 - symbol:Larp7 "La ribonucleoprotein domai... 226 3.1e-16 1
RGD|1592474 - symbol:Larp7 "La ribonucleoprotein domain f... 225 4.2e-16 1
UNIPROTKB|Q5XI01 - symbol:Larp7 "La-related protein 7" sp... 225 4.2e-16 1
UNIPROTKB|F1MR14 - symbol:F1MR14 "Uncharacterized protein... 224 5.7e-16 1
UNIPROTKB|E2QW27 - symbol:LARP7 "Uncharacterized protein"... 223 7.5e-16 1
UNIPROTKB|I3LNK9 - symbol:I3LNK9 "Uncharacterized protein... 220 1.7e-15 1
UNIPROTKB|F1S150 - symbol:LARP7 "Uncharacterized protein"... 220 1.7e-15 1
ZFIN|ZDB-GENE-030131-6896 - symbol:larp7 "La ribonucleopr... 211 1.8e-14 1
FB|FBgn0033936 - symbol:CG17386 species:7227 "Drosophila ... 191 7.4e-12 1
DICTYBASE|DDB_G0281763 - symbol:DDB_G0281763 "Lupus La pr... 179 3.0e-11 1
UNIPROTKB|F1PKV9 - symbol:LARP6 "Uncharacterized protein"... 137 3.3e-11 2
RGD|1308414 - symbol:Larp6 "La ribonucleoprotein domain f... 141 3.7e-11 2
UNIPROTKB|D6RAF3 - symbol:LARP7 "La-related protein 7" sp... 159 4.4e-11 1
MGI|MGI:1914807 - symbol:Larp6 "La ribonucleoprotein doma... 140 7.8e-11 2
UNIPROTKB|D6RF49 - symbol:LARP7 "La-related protein 7" sp... 151 3.3e-10 1
UNIPROTKB|E1BVY8 - symbol:LOC420093 "Uncharacterized prot... 150 4.3e-10 1
UNIPROTKB|F1NWE6 - symbol:LARP6 "Uncharacterized protein"... 171 4.4e-10 1
UNIPROTKB|F1SIT3 - symbol:LARP6 "Uncharacterized protein"... 139 5.3e-10 2
UNIPROTKB|F1MBD0 - symbol:LARP6 "Uncharacterized protein"... 139 8.5e-10 2
UNIPROTKB|Q9BRS8 - symbol:LARP6 "La-related protein 6" sp... 138 8.7e-10 2
ZFIN|ZDB-GENE-030131-6403 - symbol:larp6 "La ribonucleopr... 143 1.5e-09 2
ZFIN|ZDB-GENE-041008-244 - symbol:zgc:162969 "zgc:162969"... 130 4.9e-09 2
TAIR|locus:2125702 - symbol:La1 "La protein 1" species:37... 158 1.2e-08 1
FB|FBgn0260771 - symbol:Larp7 "La related protein 7" spec... 160 1.3e-08 1
UNIPROTKB|E7ERC4 - symbol:SSB "Lupus La protein" species:... 134 4.8e-08 1
UNIPROTKB|F1S1V1 - symbol:SSB "Uncharacterized protein" s... 151 6.5e-08 1
UNIPROTKB|P10881 - symbol:SSB "Lupus La protein homolog" ... 147 1.9e-07 1
MGI|MGI:98423 - symbol:Ssb "Sjogren syndrome antigen B" s... 147 2.0e-07 1
FB|FBgn0011638 - symbol:La "La autoantigen-like" species:... 146 2.3e-07 1
UNIPROTKB|E2RH09 - symbol:SSB "Uncharacterized protein" s... 146 2.4e-07 1
UNIPROTKB|E9PFH8 - symbol:SSB "Lupus La protein" species:... 144 3.2e-07 1
UNIPROTKB|P05455 - symbol:SSB "Lupus La protein" species:... 144 4.1e-07 1
MGI|MGI:2443114 - symbol:Larp4 "La ribonucleoprotein doma... 146 6.1e-07 1
CGD|CAL0004304 - symbol:orf19.2795 species:5476 "Candida ... 139 9.2e-07 1
UNIPROTKB|E9PFL9 - symbol:SSB "Lupus La protein" species:... 119 1.0e-06 1
POMBASE|SPAC57A10.10c - symbol:sla1 "La protein homolog" ... 135 2.2e-06 1
WB|WBGene00020097 - symbol:larp-1 species:6239 "Caenorhab... 143 2.4e-06 1
RGD|620804 - symbol:Ssb "Sjogren syndrome antigen B" spec... 136 3.4e-06 1
UNIPROTKB|Q66HM7 - symbol:Ssb "Sjogren syndrome antigen B... 136 3.4e-06 1
UNIPROTKB|Q96J85 - symbol:LARP4 "La-related protein 4" sp... 135 3.6e-06 1
UNIPROTKB|E9PDG5 - symbol:LARP4 "La-related protein 4" sp... 135 4.9e-06 1
UNIPROTKB|F1MAB1 - symbol:Ssb "Lupus La protein homolog" ... 133 6.2e-06 1
SGD|S000002209 - symbol:LHP1 "RNA binding protein require... 129 8.5e-06 1
UNIPROTKB|G3XAA8 - symbol:LARP4 "La-related protein 4" sp... 135 8.8e-06 1
UNIPROTKB|Q71RC2 - symbol:LARP4 "La-related protein 4" sp... 135 1.0e-05 1
UNIPROTKB|F1SH87 - symbol:LARP4 "Uncharacterized protein"... 134 1.2e-05 1
UNIPROTKB|F1MHD9 - symbol:LARP4 "Uncharacterized protein"... 131 2.3e-05 1
ZFIN|ZDB-GENE-030131-223 - symbol:ssb "Sjogren syndrome a... 127 3.2e-05 1
WB|WBGene00016653 - symbol:C44E4.4 species:6239 "Caenorha... 126 4.1e-05 1
UNIPROTKB|Q5ZKS1 - symbol:SSB "Uncharacterized protein" s... 104 4.5e-05 1
UNIPROTKB|E2R028 - symbol:LARP4 "Uncharacterized protein"... 129 4.7e-05 1
UNIPROTKB|F1PIU8 - symbol:LARP4 "Uncharacterized protein"... 129 4.7e-05 1
RGD|1592944 - symbol:LOC680385 "similar to Sjogren syndro... 125 5.4e-05 1
TAIR|locus:2017809 - symbol:La2 "La protein 2" species:37... 123 8.9e-05 1
UNIPROTKB|F1P301 - symbol:SSB "Uncharacterized protein" s... 114 0.00018 1
UNIPROTKB|H9KZD5 - symbol:LARP4 "Uncharacterized protein"... 123 0.00022 1
UNIPROTKB|F1M4K9 - symbol:LOC683071 "Protein LOC683071" s... 120 0.00034 1
TAIR|locus:2125334 - symbol:LARP1c "La related protein 1c... 119 0.00038 1
TAIR|locus:2156912 - symbol:LARP1b "AT5G66100" species:37... 117 0.00051 1
DICTYBASE|DDB_G0289333 - symbol:DDB_G0289333 species:4468... 117 0.00080 1
>TAIR|locus:2089508 [details] [associations]
symbol:LARP6c "La related protein 6c" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR009818
Pfam:PF07145 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 HOGENOM:HOG000244026 EMBL:AP002041
IPI:IPI00538604 RefSeq:NP_188540.1 UniGene:At.53384
ProteinModelPortal:Q9LHL3 SMR:Q9LHL3 PRIDE:Q9LHL3
EnsemblPlants:AT3G19090.1 GeneID:821444 KEGG:ath:AT3G19090
TAIR:At3g19090 eggNOG:NOG304440 InParanoid:Q9LHL3 OMA:FVPRSHT
PhylomeDB:Q9LHL3 ProtClustDB:CLSN2684555 Genevestigator:Q9LHL3
Uniprot:Q9LHL3
Length = 455
Score = 851 (304.6 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
Identities = 167/247 (67%), Positives = 206/247 (83%)
Query: 97 YIGGTATGSADWIFVGDQEPVYVISSPSVAMP-----SNTSKNVLTDDLRAKIIKQVEYQ 151
Y+GG +A V D + IS+P+V P S++SKN+L+DDLR KI+KQVEYQ
Sbjct: 97 YVGG-GDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQ 155
Query: 152 FSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSND 211
F+DMSLLANE++SKH++KDPEG+VP+S I S KKIK+L N+HL++ ALRSSSKL+VS D
Sbjct: 156 FTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSED 215
Query: 212 GKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNS 271
GKKV+R FTD++REELQ TVVAENLP+DHS+QNLEKIFGVVG+VK IRICHPPESNS
Sbjct: 216 GKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNS 275
Query: 272 SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLLRCSPKSVLKTKK 331
SR K DF +SNK+HAL+EY++T IA+KAVEKLNDERNWRKGLRVR+LLRCSPKSVLK ++
Sbjct: 276 SRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVLKNRR 335
Query: 332 SEFEGIL 338
+ F+GIL
Sbjct: 336 N-FDGIL 341
Score = 140 (54.3 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
Identities = 28/43 (65%), Positives = 31/43 (72%)
Query: 68 FKFNVQAPEFVPRSHT-----QM-PISGYYYPCFQYIGGTATG 104
FKFN QAPEFVPRSHT Q+ P+SGY+YPCF Y GG G
Sbjct: 33 FKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGG 75
Score = 46 (21.3 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 412 KQTFKGPRMPDVTQ 425
K KGPRMPD T+
Sbjct: 424 KTATKGPRMPDGTR 437
>TAIR|locus:2051734 [details] [associations]
symbol:LARP6b "AT2G43970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:AC004005 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 UniGene:At.20914 EMBL:AF332565
EMBL:AF375410 EMBL:AF367277 EMBL:AY056238 EMBL:AY129474
IPI:IPI00531024 PIR:T00677 RefSeq:NP_566004.1 UniGene:At.20070
UniGene:At.74750 UniGene:At.74872 UniGene:At.74992
ProteinModelPortal:O80567 SMR:O80567 IntAct:O80567 PRIDE:O80567
EnsemblPlants:AT2G43970.1 GeneID:819002 KEGG:ath:AT2G43970
TAIR:At2g43970 HOGENOM:HOG000244026 InParanoid:O80567 OMA:HEEDDAT
PhylomeDB:O80567 ProtClustDB:CLSN2688918 ArrayExpress:O80567
Genevestigator:O80567 Uniprot:O80567
Length = 545
Score = 502 (181.8 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 107/207 (51%), Positives = 138/207 (66%)
Query: 126 AMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKK 185
A S SK L +D KI+ QVEY FSD++L + L + + KDPEG+VP+ V+ S KK
Sbjct: 179 ASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKK 238
Query: 186 IKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSH 245
IK+++ NN LA L++S+KL VS DGKKVRR P T+ EELQS +VAENLPEDH +
Sbjct: 239 IKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCY 298
Query: 246 QNLEKIFGVVGSVKTIRICHPPESNS-------SRAKSD-FFVSNKLHALVEYESTDIAE 297
QNL KIF VGSVK IR C P + S S AKSD SNK+HA VEYE ++AE
Sbjct: 299 QNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAE 358
Query: 298 KAVEKLNDERNWRKGLRVRVLLRCSPK 324
+AV +L++ NWR GL+VR++L+ K
Sbjct: 359 RAVTELSEAGNWRSGLKVRLMLKHQTK 385
Score = 43 (20.2 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 412 KQTFKGPRMPDVTQ 425
KQ GPRMPD T+
Sbjct: 517 KQQPPGPRMPDGTR 530
Score = 41 (19.5 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 69 KFNVQAPEFVP-RSHTQMP 86
+ N APEFVP R+ +P
Sbjct: 48 RLNAGAPEFVPGRTTPPLP 66
>TAIR|locus:2170478 [details] [associations]
symbol:LARP6a "La related protein 6a" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0048193
"Golgi vesicle transport" evidence=RCA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 HSSP:P19339 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 KO:K15191 HOGENOM:HOG000244026
EMBL:AY050403 EMBL:BT000588 IPI:IPI00526923 RefSeq:NP_851141.1
UniGene:At.9180 ProteinModelPortal:Q94A38 SMR:Q94A38 IntAct:Q94A38
STRING:Q94A38 PRIDE:Q94A38 EnsemblPlants:AT5G46250.1 GeneID:834667
KEGG:ath:AT5G46250 TAIR:At5g46250 InParanoid:Q94A38 OMA:WRNGMRV
PhylomeDB:Q94A38 ProtClustDB:CLSN2680453 Genevestigator:Q94A38
Uniprot:Q94A38
Length = 422
Score = 404 (147.3 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 83/189 (43%), Positives = 124/189 (65%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
D+L KII+QVEY FSD +L ++ L + ++ +GFVP+S I + K+K L ++ L+
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGS 257
AL+ SS L+VS D KKV+R P E + + TV+ ENLPEDHS++N+ +IFG GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLP--EIRDPKIFTVLVENLPEDHSNENIREIFGKAGS 218
Query: 258 VKTIRICHPP--ESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRV 315
+K++ IC P E + K + F+ +LHA VEYE+ + AEKA LN+E++WR GLRV
Sbjct: 219 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 278
Query: 316 RVLLRCSPK 324
++L + + K
Sbjct: 279 KLLEQAAGK 287
Score = 39 (18.8 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 417 GPRMPDVTQ 425
GPRMPD T+
Sbjct: 392 GPRMPDGTR 400
>UNIPROTKB|D6RFF0 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
Length = 299
Score = 231 (86.4 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 62/194 (31%), Positives = 103/194 (53%)
Query: 112 GDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDP 171
G+QE V S K + A I KQV++ F D +L + L + + K
Sbjct: 6 GNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSR 65
Query: 172 EGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQS 231
+G+V +S++ S K+K L + L+A+ALRSS+ + + +G ++RRK P ++ ++E +
Sbjct: 66 DGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDER 125
Query: 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYE 291
TV E LP++ +H +E++FG G+V I I P S+ F A VE+E
Sbjct: 126 -TVYVELLPKNVNHSWIERVFGKCGNVVYISI---PHYKSTGDPKGF-------AFVEFE 174
Query: 292 STDIAEKAVEKLND 305
+ + A KA+E LN+
Sbjct: 175 TKEQAAKAIEFLNN 188
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 227 (85.0 bits), Expect = 9.2e-19, P = 9.2e-19
Identities = 61/193 (31%), Positives = 106/193 (54%)
Query: 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR 201
A I KQV++ F D++L + L + + K +G+V +S++ S K+K L + L+A+A++
Sbjct: 38 ADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAVK 97
Query: 202 SSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI 261
SSS + + +G ++RR+ P ++ ++ + S TV E LP++ +H +E++FG G+V +
Sbjct: 98 SSSVVELDLEGTRIRRRRPLGERPKD-VDSRTVYVELLPKNVNHSWIERVFGKCGNVVYV 156
Query: 262 RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND--ERNWRKGLRVRVLL 319
I P S+ F A VE+E+ + AEKA+E LN+ E RK +
Sbjct: 157 SI---PRYKSTGDPKGF-------AFVEFETKEQAEKAIEFLNNPPEEAPRKPGMFPKTV 206
Query: 320 RCSPKSVLKTKKS 332
+ P L T S
Sbjct: 207 KNKPVPTLNTSNS 219
>UNIPROTKB|Q4G0J3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
Genevestigator:Q4G0J3 Uniprot:Q4G0J3
Length = 582
Score = 231 (86.4 bits), Expect = 8.1e-17, P = 8.1e-17
Identities = 62/194 (31%), Positives = 103/194 (53%)
Query: 112 GDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDP 171
G+QE V S K + A I KQV++ F D +L + L + + K
Sbjct: 6 GNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSR 65
Query: 172 EGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQS 231
+G+V +S++ S K+K L + L+A+ALRSS+ + + +G ++RRK P ++ ++E +
Sbjct: 66 DGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDER 125
Query: 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYE 291
TV E LP++ +H +E++FG G+V I I P S+ F A VE+E
Sbjct: 126 -TVYVELLPKNVNHSWIERVFGKCGNVVYISI---PHYKSTGDPKGF-------AFVEFE 174
Query: 292 STDIAEKAVEKLND 305
+ + A KA+E LN+
Sbjct: 175 TKEQAAKAIEFLNN 188
>UNIPROTKB|E1BQG3 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AADN02009328 IPI:IPI00680045 Ensembl:ENSGALT00000019679
ArrayExpress:E1BQG3 Uniprot:E1BQG3
Length = 602
Score = 227 (85.0 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 61/193 (31%), Positives = 106/193 (54%)
Query: 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR 201
A I KQV++ F D++L + L + + K +G+V +S++ S K+K L + L+A+A++
Sbjct: 38 ADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAVK 97
Query: 202 SSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI 261
SSS + + +G ++RR+ P ++ ++ + S TV E LP++ +H +E++FG G+V +
Sbjct: 98 SSSVVELDLEGTRIRRRRPLGERPKD-VDSRTVYVELLPKNVNHSWIERVFGKCGNVVYV 156
Query: 262 RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND--ERNWRKGLRVRVLL 319
I P S+ F A VE+E+ + AEKA+E LN+ E RK +
Sbjct: 157 SI---PRYKSTGDPKGF-------AFVEFETKEQAEKAIEFLNNPPEEAPRKPGMFPKTV 206
Query: 320 RCSPKSVLKTKKS 332
+ P L T S
Sbjct: 207 KNKPVPTLNTSNS 219
>MGI|MGI:107634 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0035562 "negative regulation of chromatin binding"
evidence=IGI] [GO:0036093 "germ cell proliferation" evidence=IMP]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107634 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 CTD:51574
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 ChiTaRS:LARP7 EMBL:AC113952 EMBL:BC020127
EMBL:BC023165 EMBL:BC029178 EMBL:AK012726 EMBL:AK012772
EMBL:AK015041 EMBL:AK162147 IPI:IPI00340860 IPI:IPI00831552
RefSeq:NP_613059.2 UniGene:Mm.291032 ProteinModelPortal:Q05CL8
SMR:Q05CL8 IntAct:Q05CL8 STRING:Q05CL8 PhosphoSite:Q05CL8
PaxDb:Q05CL8 PRIDE:Q05CL8 DNASU:28036 Ensembl:ENSMUST00000029588
GeneID:28036 KEGG:mmu:28036 UCSC:uc008rhd.1
GeneTree:ENSGT00530000063464 InParanoid:Q05CL8 OMA:NNPPEDA
NextBio:306558 Bgee:Q05CL8 CleanEx:MM_LARP7 Genevestigator:Q05CL8
Uniprot:Q05CL8
Length = 570
Score = 226 (84.6 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 56/164 (34%), Positives = 96/164 (58%)
Query: 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR 201
A I KQV++ F D +L ++ L + + K +G+V +S++ S K+K L + L+A+AL+
Sbjct: 30 ADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 89
Query: 202 SSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI 261
SSS + + +G ++RRK P ++ ++E + TV E LP++ +H +E++FG G+V I
Sbjct: 90 SSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVFGKCGNVVYI 148
Query: 262 RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
I P S+ F A VE+E+ + A KA+E LN+
Sbjct: 149 SI---PHYKSTGDPKGF-------AFVEFETKEQAAKAIEFLNN 182
>RGD|1592474 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0035562
"negative regulation of chromatin binding" evidence=ISO]
[GO:0036093 "germ cell proliferation" evidence=ISO] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 225 (84.3 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 56/164 (34%), Positives = 95/164 (57%)
Query: 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR 201
A I KQV++ F D +L + L + + K +G+V +S++ S K+K L + L+A+AL+
Sbjct: 31 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 90
Query: 202 SSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI 261
SSS + + +G ++RRK P ++ ++E + TV E LP++ +H +E++FG G+V I
Sbjct: 91 SSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVFGKCGNVVYI 149
Query: 262 RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
I P S+ F A VE+E+ + A KA+E LN+
Sbjct: 150 SI---PHYKSTGDPKGF-------AFVEFETKEQAAKAIEFLNN 183
>UNIPROTKB|Q5XI01 [details] [associations]
symbol:Larp7 "La-related protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 225 (84.3 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 56/164 (34%), Positives = 95/164 (57%)
Query: 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR 201
A I KQV++ F D +L + L + + K +G+V +S++ S K+K L + L+A+AL+
Sbjct: 31 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 90
Query: 202 SSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI 261
SSS + + +G ++RRK P ++ ++E + TV E LP++ +H +E++FG G+V I
Sbjct: 91 SSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVFGKCGNVVYI 149
Query: 262 RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
I P S+ F A VE+E+ + A KA+E LN+
Sbjct: 150 SI---PHYKSTGDPKGF-------AFVEFETKEQAAKAIEFLNN 183
>UNIPROTKB|F1MR14 [details] [associations]
symbol:F1MR14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:DAAA02016483 EMBL:DAAA02016480 EMBL:DAAA02016481
EMBL:DAAA02016482 IPI:IPI00691372 Ensembl:ENSBTAT00000012693
ArrayExpress:F1MR14 Uniprot:F1MR14
Length = 578
Score = 224 (83.9 bits), Expect = 5.7e-16, P = 5.7e-16
Identities = 55/164 (33%), Positives = 96/164 (58%)
Query: 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR 201
A I+KQV++ F D +L + L + + K +G+V +S++ S K+K L + L+A+AL+
Sbjct: 34 ADIVKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 93
Query: 202 SSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI 261
SS+ + + +G ++RRK P ++ ++E + TV E LP++ +H +E++FG G+V I
Sbjct: 94 SSAVVELDLEGTRIRRKKPLGERPKDEDER-TVYVELLPKNVNHSWIERVFGKCGNVVYI 152
Query: 262 RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
I P S+ F A VE+E+ + A KA+E LN+
Sbjct: 153 SI---PHYKSTGDPKGF-------AFVEFETKEQAAKAIEFLNN 186
>UNIPROTKB|E2QW27 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AAEX03016829 ProteinModelPortal:E2QW27
Ensembl:ENSCAFT00000018607 Uniprot:E2QW27
Length = 582
Score = 223 (83.6 bits), Expect = 7.5e-16, P = 7.5e-16
Identities = 56/164 (34%), Positives = 95/164 (57%)
Query: 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR 201
A I KQV++ F D +L + L + + K +G+V +S++ S K+K L + L+A+AL+
Sbjct: 35 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 94
Query: 202 SSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI 261
SSS + + +G ++RRK P ++ ++E + TV E LP++ +H +E++FG G+V I
Sbjct: 95 SSSVVELDLEGTRIRRKKPLGERPKDEDER-TVYVELLPKNVNHSWIERVFGKCGNVVYI 153
Query: 262 RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
I P S+ F A VE+E+ + A KA+E LN+
Sbjct: 154 SI---PHYKSTGDPKGF-------AFVEFETKEQAAKAIEFLNN 187
>UNIPROTKB|I3LNK9 [details] [associations]
symbol:I3LNK9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464
Ensembl:ENSSSCT00000031777 OMA:NASEECE Uniprot:I3LNK9
Length = 580
Score = 220 (82.5 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 55/164 (33%), Positives = 95/164 (57%)
Query: 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR 201
A I KQV++ F D +L + L + + K +G+V +S++ S K+K L + L+A+AL+
Sbjct: 36 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALK 95
Query: 202 SSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI 261
SS+ + + +G ++RRK P ++ ++E + TV E LP++ +H +E++FG G+V I
Sbjct: 96 SSAVVELDLEGTRIRRKKPLGERPKDEDER-TVYVELLPKNVNHSWIERVFGKCGNVVYI 154
Query: 262 RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
I P S+ F A VE+E+ + A KA+E LN+
Sbjct: 155 SI---PHYKSTGDPKGF-------AFVEFETKEQAAKAIEFLNN 188
>UNIPROTKB|F1S150 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA EMBL:FP236150
Ensembl:ENSSSCT00000009986 Uniprot:F1S150
Length = 582
Score = 220 (82.5 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 55/164 (33%), Positives = 95/164 (57%)
Query: 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR 201
A I KQV++ F D +L + L + + K +G+V +S++ S K+K L + L+A+AL+
Sbjct: 36 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALK 95
Query: 202 SSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI 261
SS+ + + +G ++RRK P ++ ++E + TV E LP++ +H +E++FG G+V I
Sbjct: 96 SSAVVELDLEGTRIRRKKPLGERPKDEDER-TVYVELLPKNVNHSWIERVFGKCGNVVYI 154
Query: 262 RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
I P S+ F A VE+E+ + A KA+E LN+
Sbjct: 155 SI---PHYKSTGDPKGF-------AFVEFETKEQAAKAIEFLNN 188
>ZFIN|ZDB-GENE-030131-6896 [details] [associations]
symbol:larp7 "La ribonucleoprotein domain family,
member 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6896 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
EMBL:BC049455 IPI:IPI00509628 RefSeq:NP_956224.1 UniGene:Dr.29131
HSSP:Q7YZ92 ProteinModelPortal:Q7ZWE3 STRING:Q7ZWE3 PRIDE:Q7ZWE3
GeneID:334956 KEGG:dre:334956 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 InParanoid:Q7ZWE3 KO:K15191 OrthoDB:EOG4TXBS0
NextBio:20810607 ArrayExpress:Q7ZWE3 InterPro:IPR014886
Pfam:PF08777 Uniprot:Q7ZWE3
Length = 555
Score = 211 (79.3 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 52/166 (31%), Positives = 97/166 (58%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L + + KQVE+ F D++L + + + + +G++ ++V+ + ++K+L + L+A+A
Sbjct: 42 LLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARA 101
Query: 200 LRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVK 259
L++S+ + V+++G ++RRK P + ++ + S TV E LP+ +H LE++F G V
Sbjct: 102 LKNSTIVEVNDEGTRIRRKEPLGETPKD-VDSRTVYVELLPKTVTHIWLERVFSKCGHVV 160
Query: 260 TIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
I I P S+R F A VE+E+ + A+KAVE LN+
Sbjct: 161 YISI---PRYKSTRHSKGF-------AFVEFETQEQAQKAVEMLNN 196
>FB|FBgn0033936 [details] [associations]
symbol:CG17386 species:7227 "Drosophila melanogaster"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
EMBL:AE013599 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
eggNOG:NOG239004 GeneTree:ENSGT00510000048191 EMBL:BT044172
RefSeq:NP_610964.1 UniGene:Dm.24512 SMR:A1Z9R1
EnsemblMetazoa:FBtr0087488 GeneID:36605 KEGG:dme:Dmel_CG17386
UCSC:CG17386-RA FlyBase:FBgn0033936 InParanoid:A1Z9R1 OMA:RTIVACD
OrthoDB:EOG4D51CP GenomeRNAi:36605 NextBio:799463 Uniprot:A1Z9R1
Length = 867
Score = 191 (72.3 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 47/132 (35%), Positives = 75/132 (56%)
Query: 137 TDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLL 196
+++L A+I VE+ FS+ S+L + L KHV ++ EGFV L ++ S K+++ L ++
Sbjct: 278 SEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKVV 337
Query: 197 AQALRSSSKLIVSND-GKKVRRKHPFTDKEREELQSCTVVAENLPEDH-SHQNLEKIFGV 254
A+R S+ I ND G KVRR P + E + S T+VA +LP D + + + +F
Sbjct: 338 GDAVRRKSRKIELNDVGTKVRRIEPLPSFD-ETMPSRTIVACDLPLDKLTIEKVSDLFSP 396
Query: 255 VGSVKTIRICHP 266
G + IRI P
Sbjct: 397 CGEIALIRILKP 408
>DICTYBASE|DDB_G0281763 [details] [associations]
symbol:DDB_G0281763 "Lupus La protein" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 SMART:SM00360
dictyBase:DDB_G0281763 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
RefSeq:XP_640625.1 ProteinModelPortal:Q54TG6 STRING:Q54TG6
EnsemblProtists:DDB0233755 GeneID:8623235 KEGG:ddi:DDB_G0281763
InParanoid:Q54TG6 OMA:NDDANAC ProtClustDB:CLSZ2430537
Uniprot:Q54TG6
Length = 354
Score = 179 (68.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 47/165 (28%), Positives = 87/165 (52%)
Query: 136 LTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHL 195
++++ +I+KQVEY FSD + ++ L K+ + ++ + VI S ++K++ + L
Sbjct: 1 MSEETSTQILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTDLQL 60
Query: 196 LAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVV 255
+ +AL+ S++L VS DGK VRR P E + T+ ++ PED + + +++ F
Sbjct: 61 ITEALKKSTRLQVSEDGKMVRRLDPLP--ENIDCGK-TLYSKGWPEDTTIEKVQEFFNAN 117
Query: 256 GSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAV 300
G K + + R KSD S K L ++E+ +I K +
Sbjct: 118 GGYKVVSV-------RLRKKSD--KSFKGSFLADFETEEIVNKII 153
>UNIPROTKB|F1PKV9 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:AAEX03016265 Ensembl:ENSCAFT00000027928 Uniprot:F1PKV9
Length = 428
Score = 137 (53.3 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 34/101 (33%), Positives = 56/101 (55%)
Query: 139 DLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQ 198
+L K++ Q+E+ FSD +L + L KHV ++ G+V + ++ S KK+K L + A
Sbjct: 27 ELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAH 86
Query: 199 ALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENL 239
AL+ S L ++ D +KVRR P E L S ++ +L
Sbjct: 87 ALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDL 127
Score = 88 (36.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 246 QNLEKIFGVVGSVKTIRICHPPES---NSSRAKSDFF-VSNKLHALVEYESTDIAEKAVE 301
++L K+FG G + ++RI P + R S + V + A+VE+E + A KA E
Sbjct: 151 EHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHE 210
Query: 302 KLNDERNWRKGLRVRVLLRCSP--KSVLKTKKSEFE 335
++ E R+ ++ VL+ P K LK K + E
Sbjct: 211 FMSTESQGRENMKA-VLIGMKPPKKKPLKDKNQDEE 245
>RGD|1308414 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 RGD:1308414 GO:GO:0005634
GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:CH473975 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 CTD:55323 OMA:TSGGENE
OrthoDB:EOG4NGGMP GeneTree:ENSGT00510000048191 IPI:IPI00370054
RefSeq:NP_001101624.1 UniGene:Rn.33750 Ensembl:ENSRNOT00000017147
GeneID:315731 KEGG:rno:315731 UCSC:RGD:1308414 NextBio:669749
Uniprot:D3ZCR5
Length = 492
Score = 141 (54.7 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 44/148 (29%), Positives = 74/148 (50%)
Query: 99 GGTATG-SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTD------DLRAKIIKQVEYQ 151
G TA S W ++EP SS + + N +++ + +L K++ Q+E+
Sbjct: 44 GDTARYLSPGWGSASEEEPSRGHSSATTSGGENDREDLEPEWKPPDEELIRKLVDQIEFY 103
Query: 152 FSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSND 211
FSD +L + L KHV ++ G+V + ++ S KK+K L + A AL+ S L ++ D
Sbjct: 104 FSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNED 163
Query: 212 GKKVRRKHPFTDKEREELQSCTVVAENL 239
+KVRR P E L S ++ +L
Sbjct: 164 HRKVRRTTPVPLFPNENLPSKMLLVYDL 191
Score = 85 (35.0 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 248 LEKIFGVVGSVKTIRICHPPES---NSSRAKSDFF-VSNKLHALVEYESTDIAEKAVEKL 303
L K+FG G + ++RI P + R S + V + A+VE+E D A KA E +
Sbjct: 217 LLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKAHEFM 276
Query: 304 NDERNWRKGLR-VRVLLRCSPKSVLKTKKSEFE 335
E ++ ++ V + +R K LK K E E
Sbjct: 277 ATESQGKENMKAVLIGMRPPKKKPLKDKNHEDE 309
>UNIPROTKB|D6RAF3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966387
ProteinModelPortal:D6RAF3 SMR:D6RAF3 Ensembl:ENST00000507443
HOGENOM:HOG000213946 ArrayExpress:D6RAF3 Bgee:D6RAF3 Uniprot:D6RAF3
Length = 129
Score = 159 (61.0 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 36/117 (30%), Positives = 63/117 (53%)
Query: 112 GDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDP 171
G+QE V S K + A I KQV++ F D +L + L + + K
Sbjct: 6 GNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSR 65
Query: 172 EGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREE 228
+G+V +S++ S K+K L + L+A+ALRSS+ + + +G ++RRK P ++ ++E
Sbjct: 66 DGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDE 122
>MGI|MGI:1914807 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 MGI:MGI:1914807 GO:GO:0005634
GO:GO:0005794 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HSSP:P05455 CTD:55323
eggNOG:NOG239004 HOGENOM:HOG000010108 HOVERGEN:HBG070244
OMA:TSGGENE OrthoDB:EOG4NGGMP EMBL:AK017372 EMBL:AK020966
EMBL:AK039614 EMBL:AK042616 EMBL:AK087521 EMBL:BC090615
IPI:IPI00309063 RefSeq:NP_080511.2 UniGene:Mm.44546
ProteinModelPortal:Q8BN59 SMR:Q8BN59 STRING:Q8BN59
PhosphoSite:Q8BN59 PaxDb:Q8BN59 PRIDE:Q8BN59
Ensembl:ENSMUST00000038407 GeneID:67557 KEGG:mmu:67557
UCSC:uc009pzh.1 GeneTree:ENSGT00510000048191 InParanoid:Q8BN59
NextBio:324917 Bgee:Q8BN59 CleanEx:MM_LARP6 Genevestigator:Q8BN59
Uniprot:Q8BN59
Length = 492
Score = 140 (54.3 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 41/141 (29%), Positives = 71/141 (50%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTD------DLRAKIIKQVEYQFSDMSLL 158
S W ++EP SS + + N +++ + +L K++ Q+E+ FSD +L
Sbjct: 51 SPGWGSASEEEPSRGHSSATTSGGENDREDLEPEWRPPDEELIRKLVDQIEFYFSDENLE 110
Query: 159 ANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRK 218
+ L KHV ++ G+V + ++ S KK+K L + A AL+ S L ++ D +KVRR
Sbjct: 111 KDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRT 170
Query: 219 HPFTDKEREELQSCTVVAENL 239
P E L S ++ +L
Sbjct: 171 TPVPLFPNENLPSKMLLVYDL 191
Score = 83 (34.3 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 246 QNLEKIFGVVGSVKTIRICHPPES---NSSRAKSDFF-VSNKLHALVEYESTDIAEKAVE 301
++L K+FG G + ++RI P + R S + V + A+VE+E D A KA E
Sbjct: 215 EHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKAHE 274
Query: 302 KLNDERNWRKGLRVRVLLRCSP--KSVLKTKKSEFE 335
+ E ++ ++ VL+ P K LK K + E
Sbjct: 275 FMVTESQSKENMKA-VLIGMKPPKKKPLKDKNHDDE 309
>UNIPROTKB|D6RF49 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00967495
ProteinModelPortal:D6RF49 SMR:D6RF49 Ensembl:ENST00000508577
ArrayExpress:D6RF49 Bgee:D6RF49 Uniprot:D6RF49
Length = 119
Score = 151 (58.2 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 35/113 (30%), Positives = 60/113 (53%)
Query: 112 GDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDP 171
G+QE V S K + A I KQV++ F D +L + L + + K
Sbjct: 6 GNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSR 65
Query: 172 EGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
+G+V +S++ S K+K L + L+A+ALRSS+ + + +G ++RRK P ++
Sbjct: 66 DGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGER 118
>UNIPROTKB|E1BVY8 [details] [associations]
symbol:LOC420093 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00510000048191 EMBL:AADN02072211 IPI:IPI00821190
Ensembl:ENSGALT00000041247 Uniprot:E1BVY8
Length = 173
Score = 150 (57.9 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 132 SKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVG 191
S ++ L +I+ QVE+ SD +L + L KHV K+ GFV + ++ S KK+K L
Sbjct: 69 SYSIPDPQLIRRIVSQVEFYLSDENLAKDAFLLKHVQKNKLGFVSIKLLTSFKKVKYLTR 128
Query: 192 NNHLLAQALRSSSKLIVSNDGKKVRRKHPFTD 223
+ L ALR S L V+ +G KVRR+ P D
Sbjct: 129 DWRLTLYALRFSKLLEVNQEGTKVRRRVPIPD 160
>UNIPROTKB|F1NWE6 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 OMA:TSGGENE
GeneTree:ENSGT00510000048191 EMBL:AADN02040372 EMBL:AADN02040373
EMBL:AADN02040374 EMBL:AADN02040375 EMBL:AADN02040376
EMBL:AADN02040377 EMBL:AADN02040378 EMBL:AADN02040379
IPI:IPI00582301 Ensembl:ENSGALT00000006440 Uniprot:F1NWE6
Length = 444
Score = 171 (65.3 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 64/218 (29%), Positives = 105/218 (48%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
+DL K++ Q+EY FSD +L + L KHV ++ G+V + ++ S KK+K L +
Sbjct: 45 NDLIQKLVAQIEYYFSDENLEKDAFLLKHVRRNKMGYVSVKLLTSFKKVKHLTRDWRTTT 104
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTDKEREELQS-------CTVVAE----NLPEDHSHQ 246
AL+ S L +++D +KVRRK P E L + +++E N E+ Q
Sbjct: 105 HALKYSDMLELNDDNRKVRRKTPVPVFPSENLPTRMLLVYDIHMISELQGLNKQENGCIQ 164
Query: 247 N-----LEKIFGVVGSVKTIRICHPPES---NSSRAKSDFF-VSNKLHALVEYESTDIAE 297
L K F G + ++RI P + R S + + + A++E+E D A
Sbjct: 165 EKVMEYLLKAFVTFGVISSVRILKPGRDLPPDIRRFSSRYTQMGTQECAIIEFEEVDAAV 224
Query: 298 KAVEKLNDERNWRKGLRVRVLLRCSP--KSVLKTKKSE 333
+A E + E+ G++V VL+ P K V K K +
Sbjct: 225 QAHEFMCAEKK-ETGMKV-VLIGMKPPKKKVPKDKNHD 260
>UNIPROTKB|F1SIT3 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 CTD:55323 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:CU074280 EMBL:CU302364 RefSeq:XP_003121812.3
Ensembl:ENSSSCT00000005486 GeneID:100522415 KEGG:ssc:100522415
Uniprot:F1SIT3
Length = 492
Score = 139 (54.0 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 34/102 (33%), Positives = 57/102 (55%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
++L K++ Q+E+ FSD +L + L KHV ++ G+V + ++ S KK+K L + A
Sbjct: 90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENL 239
AL+ S L ++ D +KVRR P E L S ++ +L
Sbjct: 150 HALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDL 191
Score = 76 (31.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 24/94 (25%), Positives = 46/94 (48%)
Query: 246 QNLEKIFGVVGSVKTIRICHPPES---NSSRAKSDFF-VSNKLHALVEYESTDIAEKAVE 301
++L K+FG G + ++RI P + R S + V + A+VE+E + A KA E
Sbjct: 215 EHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHE 274
Query: 302 KLNDERNWRKGLRVRVLLRCSPKSVLKTKKSEFE 335
+ E ++ ++ ++ PK +K++ E
Sbjct: 275 FMISESQGKESMKAVLIGMKPPKKKPSKEKNQDE 308
>UNIPROTKB|F1MBD0 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:DAAA02027971 IPI:IPI00826749 Ensembl:ENSBTAT00000005109
ArrayExpress:F1MBD0 Uniprot:F1MBD0
Length = 425
Score = 139 (54.0 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 34/102 (33%), Positives = 57/102 (55%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
++L K++ Q+E+ FSD +L + L KHV ++ G+V + ++ S KK+K L + A
Sbjct: 23 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 82
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENL 239
AL+ S L ++ D +KVRR P E L S ++ +L
Sbjct: 83 HALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDL 124
Score = 72 (30.4 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 24/94 (25%), Positives = 46/94 (48%)
Query: 246 QNLEKIFGVVGSVKTIRICHPPES--NSSRAKSDFF--VSNKLHALVEYESTDIAEKAVE 301
++L K+FG G + ++R+ P R S+ + V + A+VE+E + A KA E
Sbjct: 148 EHLLKLFGTFGVISSVRMLKPGRELPPDIRRISNRYSQVGTQECAIVEFEEVEAAIKAHE 207
Query: 302 KLNDERNWRKGLRVRVLLRCSPKSVLKTKKSEFE 335
+ E R+ ++ ++ PK +K++ E
Sbjct: 208 FMITESQGRESMKAILIGMKPPKKKPSKEKNQDE 241
>UNIPROTKB|Q9BRS8 [details] [associations]
symbol:LARP6 "La-related protein 6" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
PROSITE:PS50102 GO:GO:0005634 GO:GO:0005794 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 EMBL:AF443828 EMBL:AF443829
EMBL:AK002058 EMBL:AL833876 EMBL:AC009269 EMBL:AC090868
EMBL:BC006082 EMBL:BC009446 EMBL:BC014018 EMBL:BC039153
IPI:IPI00377127 IPI:IPI00414661 RefSeq:NP_060827.2
RefSeq:NP_932062.1 UniGene:Hs.416755 HSSP:P05455
ProteinModelPortal:Q9BRS8 SMR:Q9BRS8 STRING:Q9BRS8
PhosphoSite:Q9BRS8 DMDM:74752287 PaxDb:Q9BRS8 PRIDE:Q9BRS8
Ensembl:ENST00000299213 Ensembl:ENST00000344870 GeneID:55323
KEGG:hsa:55323 UCSC:uc002ass.3 CTD:55323 GeneCards:GC15M071123
HGNC:HGNC:24012 HPA:HPA020338 MIM:611300 neXtProt:NX_Q9BRS8
PharmGKB:PA142671568 eggNOG:NOG239004 HOGENOM:HOG000010108
HOVERGEN:HBG070244 InParanoid:Q9BRS8 OMA:TSGGENE OrthoDB:EOG4NGGMP
ChiTaRS:LARP6 GenomeRNAi:55323 NextBio:59586 ArrayExpress:Q9BRS8
Bgee:Q9BRS8 CleanEx:HS_LARP6 Genevestigator:Q9BRS8 Uniprot:Q9BRS8
Length = 491
Score = 138 (53.6 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 34/102 (33%), Positives = 57/102 (55%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
++L K++ Q+E+ FSD +L + L KHV ++ G+V + ++ S KK+K L + A
Sbjct: 90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENL 239
AL+ S L ++ D +KVRR P E L S ++ +L
Sbjct: 150 HALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDL 191
Score = 75 (31.5 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 246 QNLEKIFGVVGSVKTIRICHPPES---NSSRAKSDFF-VSNKLHALVEYESTDIAEKAVE 301
++L K+FG G + ++RI P + R S + V + A+VE+E + A KA E
Sbjct: 215 EHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHE 274
Query: 302 KLNDERNWRKGLRVRVLLRCSP--KSVLKTKKSEFE 335
+ E ++ ++ VL+ P K K K + E
Sbjct: 275 FMITESQGKENMKA-VLIGMKPPKKKPAKDKNHDEE 309
>ZFIN|ZDB-GENE-030131-6403 [details] [associations]
symbol:larp6 "La ribonucleoprotein domain family,
member 6" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001756 "somitogenesis" evidence=IMP]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
ZFIN:ZDB-GENE-030131-6403 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0001756 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 CTD:55323 HOGENOM:HOG000010108
HOVERGEN:HBG070244 OMA:TSGGENE EMBL:BC056595 IPI:IPI00487082
RefSeq:NP_956197.1 UniGene:Dr.6975 ProteinModelPortal:Q6PHD4
GeneID:334471 KEGG:dre:334471 InParanoid:Q6PHD4 NextBio:20810417
ArrayExpress:Q6PHD4 Uniprot:Q6PHD4
Length = 485
Score = 143 (55.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 35/101 (34%), Positives = 57/101 (56%)
Query: 139 DLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQ 198
+L K++ Q+EY SD +L + L KHV ++ GFV + ++ S KK+K L + A
Sbjct: 77 ELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTRDWRTTAY 136
Query: 199 ALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENL 239
ALR S+ L ++++G+KVRR+ E L S ++ L
Sbjct: 137 ALRHSNLLELNDEGRKVRRRSTVPVFASESLPSRMLLLSEL 177
Score = 67 (28.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 248 LEKIFGVVGSVKTIRICHPPESNSSRAK--SDFF--VSNKLHALVEYESTDIAEKAVEKL 303
L K FG G + ++R+ P + + K S + + + A+VE+E + A KA E +
Sbjct: 207 LLKAFGNYGPIASVRVLKPGKDLPADLKKLSGRYSQLGTEECAIVEFEEVEAAMKAHEAV 266
Query: 304 NDERNWRKGLRVRVLLRCS--PKSVLKTKKSEFEGI 337
E R L ++V+L + PK + + EGI
Sbjct: 267 GGEGGNRGPLGLKVVLIGTKPPKKKVPKDRPRDEGI 302
>ZFIN|ZDB-GENE-041008-244 [details] [associations]
symbol:zgc:162969 "zgc:162969" species:7955 "Danio
rerio" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 ZFIN:ZDB-GENE-041008-244
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
HOVERGEN:HBG070244 GeneTree:ENSGT00510000048191 EMBL:CU062501
IPI:IPI00500994 UniGene:Dr.75982 Ensembl:ENSDART00000004483
OMA:YEYLEGA Uniprot:A8B8W4
Length = 471
Score = 130 (50.8 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
DD+ +I Q+E SD +L + L KHV ++ G+V L ++ S KKI+ L +
Sbjct: 59 DDVTQQIATQLENYLSDENLSDDAFLLKHVQRNKMGYVSLKLLTSFKKIRDLTRDWRTTL 118
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTD 223
A R+S +L V+ G KVRR+ P D
Sbjct: 119 AAARTSLQLEVNEMGTKVRRRTPVPD 144
Score = 76 (31.8 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 250 KIFGVVGSVKTIRICHP----PESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN- 304
++F G++ ++RI P P K + K+ A+VEYE + A KA E L
Sbjct: 187 RVFSPYGTISSLRILRPGKEIPAELKRYTKKHLELGRKVCAVVEYEYLEGARKAFEALKV 246
Query: 305 DERNWRKGLRVRVLL 319
+E+ +G+ V VLL
Sbjct: 247 EEQQGGRGICV-VLL 260
>TAIR|locus:2125702 [details] [associations]
symbol:La1 "La protein 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS;IDA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0000478 "endonucleolytic cleavage
involved in rRNA processing" evidence=RCA] [GO:0006406 "mRNA export
from nucleus" evidence=RCA] [GO:0006606 "protein import into
nucleus" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009561 "megagametogenesis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005618 GO:GO:0005654 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
EMBL:AY056237 IPI:IPI00530410 RefSeq:NP_567904.1 UniGene:At.2236
ProteinModelPortal:Q93ZV7 SMR:Q93ZV7 STRING:Q93ZV7 PRIDE:Q93ZV7
EnsemblPlants:AT4G32720.1 GeneID:829408 KEGG:ath:AT4G32720
TAIR:At4g32720 InParanoid:Q93ZV7 OMA:LPRDNFL PhylomeDB:Q93ZV7
ProtClustDB:CLSN2689721 Genevestigator:Q93ZV7 Uniprot:Q93ZV7
Length = 433
Score = 158 (60.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 53/181 (29%), Positives = 90/181 (49%)
Query: 136 LTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLV--GNN 193
LT++ +++QVE+ FSD +L ++ L K V + +G V L++I S K++ + G++
Sbjct: 6 LTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDS 65
Query: 194 H----------LLAQALRSSSKLIVSNDGKKVRRKHPFTDKER--EELQSCTVVAENLPE 241
+A LR+SS L +S+DGKKV R E E+L + TV A
Sbjct: 66 KGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSY 125
Query: 242 DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 301
D +++E F G V ++R+ P SR S ALVE+ + + A+ ++
Sbjct: 126 DVKREDVESFFSQYGKVNSVRM--PRHVAESRIFSGV-------ALVEFPTEEDAQNVMK 176
Query: 302 K 302
+
Sbjct: 177 Q 177
>FB|FBgn0260771 [details] [associations]
symbol:Larp7 "La related protein 7" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0097322 "7SK snRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:AE014298 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 KO:K15191
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
GO:GO:0097322 EMBL:AY061107 RefSeq:NP_524795.2 UniGene:Dm.31047
SMR:Q9W362 IntAct:Q9W362 STRING:Q9W362 EnsemblMetazoa:FBtr0301275
GeneID:44900 KEGG:dme:Dmel_CG42569 UCSC:CG12058-RA
FlyBase:FBgn0260771 InParanoid:Q9W362 OMA:PGLIVEC OrthoDB:EOG4CVDQ5
GenomeRNAi:44900 NextBio:837804 Uniprot:Q9W362
Length = 595
Score = 160 (61.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 52/188 (27%), Positives = 92/188 (48%)
Query: 114 QEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEG 173
+EP +SP K L + +R Q+E+ F D +L + L ++V +DP
Sbjct: 37 KEPAPEDASPDKKDGGRKRKRHLFNSIRG----QMEFYFGDANLSKDRFLRRYVEQDP-- 90
Query: 174 FVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCT 233
+VPL + + KIK+L + +A+AL +S L + KV+R+ D+ ++ T
Sbjct: 91 YVPLEIFLTFNKIKTLTQDVQQIAKALSNSQLLELDETELKVKRRTKLPDQR--DVNDKT 148
Query: 234 VVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYEST 293
+ E LP + +H L+++F G V + + H P + + K +F A +E+E +
Sbjct: 149 LYVEALPANATHDWLKEVFSRYGPVAYVSLPHYP--GTKKIK-EF-------AFIEFEKS 198
Query: 294 DIAEKAVE 301
EKAV+
Sbjct: 199 GSLEKAVK 206
>UNIPROTKB|E7ERC4 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916922
ProteinModelPortal:E7ERC4 SMR:E7ERC4 PRIDE:E7ERC4
Ensembl:ENST00000422006 ArrayExpress:E7ERC4 Bgee:E7ERC4
Uniprot:E7ERC4
Length = 184
Score = 134 (52.2 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 36/131 (27%), Positives = 73/131 (55%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL ++ ++ L + +++ +A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S ++L+ +S D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTIRI 263
G V I++
Sbjct: 132 EDKGQVLNIQM 142
>UNIPROTKB|F1S1V1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS EMBL:CU466304
Ensembl:ENSSSCT00000017354 Uniprot:F1S1V1
Length = 402
Score = 151 (58.2 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 57/211 (27%), Positives = 99/211 (46%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL ++ ++ L + +++ +A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIIEA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S ++L+ +S D K+RR P TD+ + +L++ +V + P D + +++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDLKNRSVYVKGFPTDATLDDIKDWL 131
Query: 253 GVVGSVKTI---RICHPPESNSSRAKSDFFVSNKLHALV---EYESTDIA----EKAVEK 302
G + I R H S A D S K +Y+ TD+ E+ K
Sbjct: 132 EDKGEILNIQMRRTLHKTFKGSIFAVFDSIESAKKFVKTPGQKYKDTDLLILFKEEYFAK 191
Query: 303 LNDERNWRKGLRVRVLLRCSPKSVLKTKKSE 333
N+ER K + LR + K K +E
Sbjct: 192 KNEERKKHK---IEAKLRAKHRQQEKLKLAE 219
>UNIPROTKB|P10881 [details] [associations]
symbol:SSB "Lupus La protein homolog" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:X13698 EMBL:BC103234 IPI:IPI00687044 PIR:S03849
RefSeq:NP_788838.1 UniGene:Bt.15513 ProteinModelPortal:P10881
SMR:P10881 STRING:P10881 PRIDE:P10881 Ensembl:ENSBTAT00000011484
GeneID:338071 KEGG:bta:338071 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS NextBio:20812521 Uniprot:P10881
Length = 404
Score = 147 (56.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 57/211 (27%), Positives = 99/211 (46%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL ++ ++ L + +++ +A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S ++L+ +S D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAALDDIKEWL 131
Query: 253 GVVGSVKTI---RICHPPESNSSRAKSDFFVSNKLHALV---EYESTDIA----EKAVEK 302
G V I R H S A D S K +Y+ TD+ E K
Sbjct: 132 EDKGQVLNIQMRRTLHKAFKGSIFAVFDSIESAKKFVETPGQKYKDTDLLILFKEDYFTK 191
Query: 303 LNDERNWRKGLRVRVLLRCSPKSVLKTKKSE 333
N+ER K + LR + K K +E
Sbjct: 192 KNEERKQNK---MEAKLRAKQEQEEKQKLAE 219
>MGI|MGI:98423 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:98423 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:L00993
EMBL:BC003820 EMBL:Y07951 IPI:IPI00134300 RefSeq:NP_001103615.1
RefSeq:NP_033304.1 UniGene:Mm.10508 ProteinModelPortal:P32067
SMR:P32067 DIP:DIP-37706N IntAct:P32067 STRING:P32067
PhosphoSite:P32067 PaxDb:P32067 PRIDE:P32067
Ensembl:ENSMUST00000090852 Ensembl:ENSMUST00000166411 GeneID:20823
KEGG:mmu:20823 InParanoid:P32067 ChiTaRS:SSB NextBio:299565
Bgee:P32067 CleanEx:MM_SSB Genevestigator:P32067
GermOnline:ENSMUSG00000068882 Uniprot:P32067
Length = 415
Score = 147 (56.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 56/202 (27%), Positives = 95/202 (47%)
Query: 127 MPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKI 186
M N +T L AKI Q+EY F D +L ++ L + + D EG+VPL + ++
Sbjct: 1 MAENGDNEKMTA-LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRL 58
Query: 187 KSLVGNNHLLAQAL-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENL 239
L + +++ QAL +S +KL+ VS D K+RR P TD+ + ++++ +V +
Sbjct: 59 NRLTTDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGF 118
Query: 240 PEDHSHQNLEKIFGVVGSVKTI---RICHPPESNSSRAKSDFFVSNKLHALV---EYEST 293
P D + ++++ G + I R H S A D S K + +Y+ T
Sbjct: 119 PTDATLDDIKEWLDDKGQILNIQMRRTLHKTFKGSIFAVFDSIQSAKKFVEIPGQKYKDT 178
Query: 294 DIA----EKAVEKLNDERNWRK 311
++ E K N+ER K
Sbjct: 179 NLLILFKEDYFAKKNEERKQSK 200
>FB|FBgn0011638 [details] [associations]
symbol:La "La autoantigen-like" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0008098
"5S rRNA primary transcript binding" evidence=NAS;IDA] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:AE014134 GO:GO:0000166 GO:GO:0003677 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:U07652 EMBL:L32988 PIR:A53773 PIR:A53781 RefSeq:NP_477014.1
RefSeq:NP_724257.1 UniGene:Dm.4836 ProteinModelPortal:P40796
SMR:P40796 DIP:DIP-19001N IntAct:P40796 MINT:MINT-785398
STRING:P40796 PaxDb:P40796 EnsemblMetazoa:FBtr0081373
EnsemblMetazoa:FBtr0081374 GeneID:35305 KEGG:dme:Dmel_CG10922
CTD:35305 FlyBase:FBgn0011638 InParanoid:P40796 OMA:EHNEERR
OrthoDB:EOG4GF1X7 PhylomeDB:P40796 GenomeRNAi:35305 NextBio:792866
Bgee:P40796 GermOnline:CG10922 GO:GO:0008098 Uniprot:P40796
Length = 390
Score = 146 (56.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 54/185 (29%), Positives = 86/185 (46%)
Query: 137 TDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLL 196
T RA II+QVEY F D +L ++ L + + K+ +G+VPLSV+ + K++ SL + +
Sbjct: 48 TKQERA-IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEI 106
Query: 197 AQALRSSSK-LIVSNDGKKVRRKHP------FTDKEREELQSCTVVAENLPEDHSHQNLE 249
AL S + L+ ++ K R+HP ++ R+E+Q T A+ P D L
Sbjct: 107 VAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELL 166
Query: 250 KIFGVVGSVK--TIRICHPPESNSSRAKSDFFVS--NKLHALVEYESTDIAEKAVEKLND 305
V T+R + + S + K F++ K A E I K E L
Sbjct: 167 DFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKERELL-- 224
Query: 306 ERNWR 310
R W+
Sbjct: 225 -RKWQ 228
>UNIPROTKB|E2RH09 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 OMA:ENAEMKS EMBL:AAEX03017743
RefSeq:XP_535952.2 ProteinModelPortal:E2RH09
Ensembl:ENSCAFT00000038572 GeneID:478787 KEGG:cfa:478787
Uniprot:E2RH09
Length = 406
Score = 146 (56.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 57/211 (27%), Positives = 99/211 (46%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL ++ ++ L + +++ +A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S ++L+ +S D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTI---RICHPPESNSSRAKSDFFVSNKLHALV---EYESTDIA----EKAVEK 302
G V I R H S A D S + +Y+ TD+ E K
Sbjct: 132 EDKGQVLNIQMRRTLHKAFKGSIFAVFDSIESARKFVDTPDQKYKDTDLLILFKEDYFAK 191
Query: 303 LNDERNWRKGLRVRVLLRCSPKSVLKTKKSE 333
N+ER K V LR + K K +E
Sbjct: 192 KNEERKQNK---VEAKLRAKQEQEEKQKLAE 219
>UNIPROTKB|E9PFH8 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916802
ProteinModelPortal:E9PFH8 SMR:E9PFH8 PRIDE:E9PFH8
Ensembl:ENST00000409005 ArrayExpress:E9PFH8 Bgee:E9PFH8
Uniprot:E9PFH8
Length = 361
Score = 144 (55.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 56/211 (26%), Positives = 97/211 (45%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL ++ ++ L + +++ +A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S ++L+ +S D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTI---RICHPPESNSSRAKSDFFVSNKLHALV---EYESTDIA----EKAVEK 302
G V I R H S D S K +Y+ TD+ + K
Sbjct: 132 EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAK 191
Query: 303 LNDERNWRKGLRVRVLLRCSPKSVLKTKKSE 333
N+ER K V LR + K K E
Sbjct: 192 KNEERKQNK---VEAKLRAKQEQEAKQKLEE 219
>UNIPROTKB|P05455 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=TAS] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0006400 "tRNA modification"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471058 GO:GO:0030529 GO:GO:0006400 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 CTD:6741
HOGENOM:HOG000006947 HOVERGEN:HBG001407 OMA:ENAEMKS EMBL:X13697
EMBL:J04205 EMBL:BT009862 EMBL:AB451228 EMBL:AC009967 EMBL:BC001289
EMBL:BC020818 EMBL:M20328 IPI:IPI00009032 PIR:A31888
RefSeq:NP_003133.1 UniGene:Hs.632535 PDB:1OWX PDB:1S79 PDB:1S7A
PDB:1YTY PDB:1ZH5 PDB:2VOD PDB:2VON PDB:2VOO PDB:2VOP PDBsum:1OWX
PDBsum:1S79 PDBsum:1S7A PDBsum:1YTY PDBsum:1ZH5 PDBsum:2VOD
PDBsum:2VON PDBsum:2VOO PDBsum:2VOP DisProt:DP00229
ProteinModelPortal:P05455 SMR:P05455 DIP:DIP-29750N IntAct:P05455
MINT:MINT-5002383 STRING:P05455 PhosphoSite:P05455 DMDM:125985
PaxDb:P05455 PeptideAtlas:P05455 PRIDE:P05455 DNASU:6741
Ensembl:ENST00000260956 Ensembl:ENST00000409333 GeneID:6741
KEGG:hsa:6741 UCSC:uc002ufk.3 GeneCards:GC02P170619 HGNC:HGNC:11316
HPA:CAB004643 HPA:HPA012385 HPA:HPA017287 MIM:109090
neXtProt:NX_P05455 PharmGKB:PA36140 InParanoid:P05455
OrthoDB:EOG4C2HB3 PhylomeDB:P05455 EvolutionaryTrace:P05455
GenomeRNAi:6741 NextBio:26296 PMAP-CutDB:P05455 ArrayExpress:P05455
Bgee:P05455 CleanEx:HS_SSB Genevestigator:P05455
GermOnline:ENSG00000138385 GO:GO:0008334 Uniprot:P05455
Length = 408
Score = 144 (55.7 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 56/211 (26%), Positives = 97/211 (45%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL ++ ++ L + +++ +A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S ++L+ +S D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTI---RICHPPESNSSRAKSDFFVSNKLHALV---EYESTDIA----EKAVEK 302
G V I R H S D S K +Y+ TD+ + K
Sbjct: 132 EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAK 191
Query: 303 LNDERNWRKGLRVRVLLRCSPKSVLKTKKSE 333
N+ER K V LR + K K E
Sbjct: 192 KNEERKQNK---VEAKLRAKQEQEAKQKLEE 219
>MGI|MGI:2443114 [details] [associations]
symbol:Larp4 "La ribonucleoprotein domain family, member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007010 "cytoskeleton organization" evidence=ISO]
[GO:0022604 "regulation of cell morphogenesis" evidence=ISO]
InterPro:IPR000504 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2443114
GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 HOGENOM:HOG000004803
HOVERGEN:HBG055137 CTD:113251 EMBL:AK049756 EMBL:AK141743
IPI:IPI00828620 RefSeq:NP_001019697.2 UniGene:Mm.28811
UniGene:Mm.490671 ProteinModelPortal:Q8BWW4 SMR:Q8BWW4
PhosphoSite:Q8BWW4 PaxDb:Q8BWW4 PRIDE:Q8BWW4 GeneID:207214
KEGG:mmu:207214 UCSC:uc007xql.1 InParanoid:Q8BWW4 OrthoDB:EOG44MXRZ
NextBio:371897 CleanEx:MM_LARP4 Genevestigator:Q8BWW4
GermOnline:ENSMUSG00000023025 Uniprot:Q8BWW4
Length = 719
Score = 146 (56.5 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 50/182 (27%), Positives = 85/182 (46%)
Query: 79 PRSHTQMP---ISGY---YYPCFQYIGGTAT--GSADWIFVGDQEPVYVISSPSVAMPSN 130
P HT++ Y Y P + TA SAD + +G ++ Y + S
Sbjct: 50 PEGHTELSEDMCKEYEVMYSPSCETTRNTADVEESADGMILGPEDLSYQLYDVS----GE 105
Query: 131 TSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLV 190
+S + T+DL+ + KQ+E+ FS +L + L ++ D FVP+ + +M++IK L
Sbjct: 106 SSSAISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ--FVPIWTVANMEEIKKLT 163
Query: 191 GNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEK 250
N L+ + LRSS + V G+KVR H + C V+ +PE + ++
Sbjct: 164 TNTDLILEVLRSSPMVQVDEKGEKVRPSH----------KRCIVILREIPETTPVEEVKA 213
Query: 251 IF 252
+F
Sbjct: 214 LF 215
>CGD|CAL0004304 [details] [associations]
symbol:orf19.2795 species:5476 "Candida albicans" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] [GO:0034307
"regulation of ascospore formation" evidence=IEA] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IEA] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 CGD:CAL0004304 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AACQ01000185 RefSeq:XP_711737.1
ProteinModelPortal:Q59PU8 STRING:Q59PU8 GeneID:3646665
KEGG:cal:CaO19.2795 Uniprot:Q59PU8
Length = 324
Score = 139 (54.0 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 42/147 (28%), Positives = 75/147 (51%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
+D K+ KQVE+ FSD +L ++ L K + + +G+V L I + +++ + +++
Sbjct: 9 EDFDEKVRKQVEFYFSDSNLQTDKFLWK-IYESNDGWVELKTILTFGRMRQYRPEDKVIS 67
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTD--KEREELQSCTVVAENLPEDHSHQNLEKIFG-- 253
AL+ S KL++S + +RRK P D + + + T+ E P+D S ++E
Sbjct: 68 -ALKESKKLVLSANNDMIRRKDPIKDFNEVKNTRKRNTIHIEGFPKDLSQDDVENWVNEK 126
Query: 254 -VVGSVKTIRICHPPESNSSRAKSDFF 279
+V K +C S RAK +FF
Sbjct: 127 VIVQLPKEKEVCSIRRIKS-RAKKEFF 152
>UNIPROTKB|E9PFL9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00917205
ProteinModelPortal:E9PFL9 SMR:E9PFL9 PRIDE:E9PFL9
Ensembl:ENST00000413002 ArrayExpress:E9PFL9 Bgee:E9PFL9
Uniprot:E9PFL9
Length = 134
Score = 119 (46.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 33/111 (29%), Positives = 63/111 (56%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL ++ ++ L + +++ +A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDH 243
L +S ++L+ +S D K+RR P TD+ + ++++ +V + P H
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYISH-PVAH 121
>POMBASE|SPAC57A10.10c [details] [associations]
symbol:sla1 "La protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0034307 "regulation
of ascospore formation" evidence=IMP] [GO:0034414 "tRNA 3'-trailer
cleavage, endonucleolytic" evidence=IMP] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IGI] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC57A10.10c GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0030529 GO:GO:0031137 InterPro:IPR006630
PROSITE:PS50961 EMBL:AF022949 EMBL:AB011371 PIR:T38937 PIR:T43542
RefSeq:NP_593315.1 ProteinModelPortal:P87058 STRING:P87058
PRIDE:P87058 EnsemblFungi:SPAC57A10.10c.1 GeneID:2541530
KEGG:spo:SPAC57A10.10c eggNOG:COG5193 HOGENOM:HOG000113277
KO:K11090 OMA:FFEENAG OrthoDB:EOG43JGF6 NextBio:20802627
GO:GO:0034307 GO:GO:0006386 GO:GO:0034414 Pfam:PF05383
SMART:SM00715 Uniprot:P87058
Length = 298
Score = 135 (52.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 48/175 (27%), Positives = 86/175 (49%)
Query: 133 KNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGN 192
K L+ D A+++KQVE+ FSD +L ++ L K+ +G+VP+ I + K+++
Sbjct: 57 KKDLSFD-EAEVLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPIQTIANFKRMRRFQPL 114
Query: 193 NHLLAQALRSSSKLI-VSNDGKKVRRKHPFTDKEREELQSCTVVAENLPE--DHSHQNLE 249
++ ALR S +L+ V G+KVRR P + + + +V + + D + LE
Sbjct: 115 EAIV-NALRKSPELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKGFGDEKDDTQIALE 173
Query: 250 KIFGV-VGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL 303
K F G + +R+ + + K FV E++ D+A K +EK+
Sbjct: 174 KFFEENAGPISAVRM---RRDDDKKFKGSVFV--------EFKEPDVANKFLEKV 217
>WB|WBGene00020097 [details] [associations]
symbol:larp-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0034046 "poly(G) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0040010 GO:GO:0008266
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0040035 GO:GO:0000932 GO:GO:0034046
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 GeneTree:ENSGT00390000000523
EMBL:FO080694 ProteinModelPortal:D5MCN2 SMR:D5MCN2 PRIDE:D5MCN2
EnsemblMetazoa:R144.7b KEGG:cel:CELE_R144.7 CTD:175680
WormBase:R144.7b OMA:CAEMNTL ArrayExpress:D5MCN2 Uniprot:D5MCN2
Length = 1150
Score = 143 (55.4 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 33/107 (30%), Positives = 62/107 (57%)
Query: 111 VGDQEPVYV-ISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNK 169
V + EP+ I + P + V D L+ + KQ+EY FS+ +L + L + +
Sbjct: 549 VSNGEPINTAIPFAPIYNPPTAPRPVTDDTLKEYVRKQIEYYFSEENLQKDFFLRRKMG- 607
Query: 170 DPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVR 216
PEG++P+++I S +++SL + L+ +AL+ S+K+ +S DG ++R
Sbjct: 608 -PEGYLPVALIASFPRVRSLTEDYSLILEALKDSTKVDMSPDGLQIR 653
>RGD|620804 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 RGD:620804 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0030529 GO:GO:0008033
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OrthoDB:EOG4C2HB3 EMBL:X67859 IPI:IPI00212219
PIR:JC1494 UniGene:Rn.24494 ProteinModelPortal:P38656 SMR:P38656
DIP:DIP-46500N STRING:P38656 PhosphoSite:P38656 PRIDE:P38656
UCSC:RGD:620804 InParanoid:P38656 ArrayExpress:P38656
Genevestigator:P38656 GermOnline:ENSRNOG00000007998 Uniprot:P38656
Length = 415
Score = 136 (52.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 52/189 (27%), Positives = 89/189 (47%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL + ++ L + +++ QA
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S + L+ VS D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTI---RICHPPESNSSRAKSDFFVSNKLHALV---EYESTDIA----EKAVEK 302
G + I R H S A D S K +Y+ T++ E K
Sbjct: 132 DDKGQILNIQMRRTLHKTFKGSIFAVFDSIQSAKKFVDTPGQKYKDTNLLILFKEDYFAK 191
Query: 303 LNDERNWRK 311
N+ER K
Sbjct: 192 KNEERKQSK 200
>UNIPROTKB|Q66HM7 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:620804 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 EMBL:CH473949 InterPro:IPR006630 PROSITE:PS50961
KO:K11090 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 CTD:6741
HOVERGEN:HBG001407 OMA:ENAEMKS UniGene:Rn.24494 EMBL:BC081780
IPI:IPI00471902 RefSeq:NP_112381.2 SMR:Q66HM7 STRING:Q66HM7
Ensembl:ENSRNOT00000011174 GeneID:81783 KEGG:rno:81783
InParanoid:Q66HM7 NextBio:615635 Genevestigator:Q66HM7
Uniprot:Q66HM7
Length = 415
Score = 136 (52.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 52/189 (27%), Positives = 89/189 (47%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL + ++ L + +++ QA
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S + L+ VS D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTI---RICHPPESNSSRAKSDFFVSNKLHALV---EYESTDIA----EKAVEK 302
G + I R H S A D S K +Y+ T++ E K
Sbjct: 132 DDKGQILNIQMRRTLHKTFKGSIFAVFDSIQSAKKFVDTPGQKYKDTNLLILFKEDYFAK 191
Query: 303 LNDERNWRK 311
N+ER K
Sbjct: 192 KNEERKQSK 200
>UNIPROTKB|Q96J85 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AC090058 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000004803
UniGene:Hs.26613 DNASU:113251 GeneID:113251 KEGG:hsa:113251
CTD:113251 HGNC:HGNC:24320 PharmGKB:PA142671566 ChiTaRS:LARP4
GenomeRNAi:113251 NextBio:78808 RefSeq:NP_001164275.1 EMBL:AY004310
IPI:IPI01012507 SMR:Q96J85 STRING:Q96J85 Ensembl:ENST00000518561
HOVERGEN:HBG062469 Uniprot:Q96J85
Length = 375
Score = 135 (52.6 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 42/148 (28%), Positives = 76/148 (51%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLS 164
S D + +G ++ Y I V+ SN++ V T+DL+ + KQ+E+ FS +L + L
Sbjct: 18 STDGMILGPEDLSYQIYD--VSGESNSA--VSTEDLKECLKKQLEFCFSRENLSKDLYLI 73
Query: 165 KHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
++ D F+P+ + +M++IK L + L+ + LRSS + V G+KVR H
Sbjct: 74 SQMDSDQ--FIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH----- 126
Query: 225 EREELQSCTVVAENLPEDHSHQNLEKIF 252
+ C V+ +PE + ++ +F
Sbjct: 127 -----KRCIVILREIPETTPIEEVKGLF 149
>UNIPROTKB|E9PDG5 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AC090058 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 UniGene:Hs.26613
DNASU:113251 GeneID:113251 KEGG:hsa:113251 CTD:113251
HGNC:HGNC:24320 ChiTaRS:LARP4 GenomeRNAi:113251 NextBio:78808
IPI:IPI00418689 RefSeq:NP_001164275.1 ProteinModelPortal:E9PDG5
SMR:E9PDG5 Ensembl:ENST00000522085 ArrayExpress:E9PDG5 Bgee:E9PDG5
Uniprot:E9PDG5
Length = 445
Score = 135 (52.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 42/148 (28%), Positives = 76/148 (51%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLS 164
S D + +G ++ Y I V+ SN++ V T+DL+ + KQ+E+ FS +L + L
Sbjct: 88 STDGMILGPEDLSYQIYD--VSGESNSA--VSTEDLKECLKKQLEFCFSRENLSKDLYLI 143
Query: 165 KHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
++ D F+P+ + +M++IK L + L+ + LRSS + V G+KVR H
Sbjct: 144 SQMDSDQ--FIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH----- 196
Query: 225 EREELQSCTVVAENLPEDHSHQNLEKIF 252
+ C V+ +PE + ++ +F
Sbjct: 197 -----KRCIVILREIPETTPIEEVKGLF 219
>UNIPROTKB|F1MAB1 [details] [associations]
symbol:Ssb "Lupus La protein homolog" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 RGD:620804
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 IPI:IPI00196913 PRIDE:F1MAB1
Ensembl:ENSRNOT00000010625 ArrayExpress:F1MAB1 Uniprot:F1MAB1
Length = 381
Score = 133 (51.9 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 37/131 (28%), Positives = 71/131 (54%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL + ++ L + +++ QA
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S + L+ VS D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTIRI 263
G + I++
Sbjct: 132 DDKGQILNIQM 142
>SGD|S000002209 [details] [associations]
symbol:LHP1 "RNA binding protein required for maturation of
tRNA and U6 snRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0000049 "tRNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008033 "tRNA processing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 SGD:S000002209 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0030529 GO:GO:0008033 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:L33023 EMBL:Z74099 EMBL:AY558373
EMBL:L13282 EMBL:X80801 PIR:B48600 RefSeq:NP_010232.1
ProteinModelPortal:P33399 SMR:P33399 DIP:DIP-6444N IntAct:P33399
MINT:MINT-652314 STRING:P33399 PaxDb:P33399 PeptideAtlas:P33399
EnsemblFungi:YDL051W GeneID:851509 KEGG:sce:YDL051W CYGD:YDL051w
OMA:NDGWVEL NextBio:968869 Genevestigator:P33399 GermOnline:YDL051W
Uniprot:P33399
Length = 275
Score = 129 (50.5 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 41/139 (29%), Positives = 69/139 (49%)
Query: 137 TDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLL 196
T ++ + +KQVE+ FS+ + + L K+ +G+VP+S I + ++K + ++
Sbjct: 26 TPEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKN-DGWVPISTIATFNRMKKYRPVDKVI 84
Query: 197 AQALRSSSKLIVSNDGKKVRRKHPF----TDKEREELQSCTVVAENLP-ED-------HS 244
+ALRSS L VS DG+ V+R+ P R E T+ N P ED
Sbjct: 85 -EALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHEDVEASQIPEL 143
Query: 245 HQNLEKIFGVVGSVKTIRI 263
+NLE F +G + +R+
Sbjct: 144 QENLEAFFKKLGEINQVRL 162
>UNIPROTKB|G3XAA8 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CH471111 GO:GO:0030529
EMBL:AC090058 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 RefSeq:NP_001164279.1 UniGene:Hs.26613 GeneID:113251
KEGG:hsa:113251 CTD:113251 HGNC:HGNC:24320 ChiTaRS:LARP4
GenomeRNAi:113251 NextBio:78808 ProteinModelPortal:G3XAA8
SMR:G3XAA8 PRIDE:G3XAA8 Ensembl:ENST00000293618 ArrayExpress:G3XAA8
Bgee:G3XAA8 Uniprot:G3XAA8
Length = 653
Score = 135 (52.6 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 42/148 (28%), Positives = 76/148 (51%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLS 164
S D + +G ++ Y I V+ SN++ V T+DL+ + KQ+E+ FS +L + L
Sbjct: 88 STDGMILGPEDLSYQIYD--VSGESNSA--VSTEDLKECLKKQLEFCFSRENLSKDLYLI 143
Query: 165 KHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
++ D F+P+ + +M++IK L + L+ + LRSS + V G+KVR H
Sbjct: 144 SQMDSDQ--FIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH----- 196
Query: 225 EREELQSCTVVAENLPEDHSHQNLEKIF 252
+ C V+ +PE + ++ +F
Sbjct: 197 -----KRCIVILREIPETTPIEEVKGLF 219
>UNIPROTKB|Q71RC2 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IMP] [GO:0022604 "regulation
of cell morphogenesis" evidence=IMP] InterPro:IPR000504
PROSITE:PS50102 SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 EMBL:CH471111 GO:GO:0022604
EMBL:AC090058 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 HOGENOM:HOG000004803
HOVERGEN:HBG055137 EMBL:AK055521 EMBL:AK125113 EMBL:AK291746
EMBL:AF370416 EMBL:BX647457 EMBL:CR936626 IPI:IPI00043638
IPI:IPI00395347 IPI:IPI00797384 IPI:IPI00982060
RefSeq:NP_001164279.1 RefSeq:NP_443111.4 RefSeq:NP_954658.2
UniGene:Hs.26613 PDB:2CQK PDB:3PKN PDBsum:2CQK PDBsum:3PKN
ProteinModelPortal:Q71RC2 SMR:Q71RC2 IntAct:Q71RC2 STRING:Q71RC2
PhosphoSite:Q71RC2 DMDM:189047131 PaxDb:Q71RC2 PRIDE:Q71RC2
DNASU:113251 Ensembl:ENST00000347328 Ensembl:ENST00000398473
Ensembl:ENST00000429001 Ensembl:ENST00000518444
Ensembl:ENST00000520064 GeneID:113251 KEGG:hsa:113251
UCSC:uc001rwm.3 UCSC:uc001rws.2 UCSC:uc009zlr.1 CTD:113251
GeneCards:GC12P050794 HGNC:HGNC:24320 HPA:HPA039306 HPA:HPA039673
neXtProt:NX_Q71RC2 PharmGKB:PA142671566 OMA:WTIANME ChiTaRS:LARP4
EvolutionaryTrace:Q71RC2 GenomeRNAi:113251 NextBio:78808
PMAP-CutDB:Q71RC2 ArrayExpress:Q71RC2 Bgee:Q71RC2 CleanEx:HS_LARP4
Genevestigator:Q71RC2 GermOnline:ENSG00000161813 Uniprot:Q71RC2
Length = 724
Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 42/148 (28%), Positives = 76/148 (51%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLS 164
S D + +G ++ Y I V+ SN++ V T+DL+ + KQ+E+ FS +L + L
Sbjct: 88 STDGMILGPEDLSYQIYD--VSGESNSA--VSTEDLKECLKKQLEFCFSRENLSKDLYLI 143
Query: 165 KHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
++ D F+P+ + +M++IK L + L+ + LRSS + V G+KVR H
Sbjct: 144 SQMDSDQ--FIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH----- 196
Query: 225 EREELQSCTVVAENLPEDHSHQNLEKIF 252
+ C V+ +PE + ++ +F
Sbjct: 197 -----KRCIVILREIPETTPIEEVKGLF 219
>UNIPROTKB|F1SH87 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417
EMBL:AEMK01178304 EMBL:CU856260 EMBL:CU984599
Ensembl:ENSSSCT00000000235 OMA:CKEYEIM Uniprot:F1SH87
Length = 699
Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 41/148 (27%), Positives = 76/148 (51%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLS 164
S D + +G ++ Y I V+ SN++ + T+DL+ + KQ+E+ FS +L + L
Sbjct: 86 STDGMILGPEDLNYQIYD--VSGESNSA--ISTEDLKECLKKQLEFCFSRENLSKDLYLI 141
Query: 165 KHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
++ D F+P+ + +M++IK L + L+ + LRSS + V G+KVR H
Sbjct: 142 SQMDSDQ--FIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH----- 194
Query: 225 EREELQSCTVVAENLPEDHSHQNLEKIF 252
+ C V+ +PE + ++ +F
Sbjct: 195 -----KRCIVILREIPETTPIEEVKALF 217
>UNIPROTKB|F1MHD9 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 OMA:WTIANME
EMBL:DAAA02012927 IPI:IPI01002357 Ensembl:ENSBTAT00000022821
Uniprot:F1MHD9
Length = 621
Score = 131 (51.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 41/148 (27%), Positives = 76/148 (51%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLS 164
S D + +G ++ Y I V+ SN++ + T++L+ + KQ+E+ FS +L + L
Sbjct: 87 STDGMILGPEDLNYQIYD--VSGESNSA--ISTEELKECLKKQLEFCFSRENLSKDLYLI 142
Query: 165 KHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
++ D FVP+ + +M++IK L + L+ + LRSS + V G+KVR H
Sbjct: 143 SQMDSDQ--FVPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH----- 195
Query: 225 EREELQSCTVVAENLPEDHSHQNLEKIF 252
+ C V+ +PE + ++ +F
Sbjct: 196 -----KRCIVILREIPETTPIEEVKALF 218
>ZFIN|ZDB-GENE-030131-223 [details] [associations]
symbol:ssb "Sjogren syndrome antigen B (autoantigen
La)" species:7955 "Danio rerio" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-223 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:CABZ01067486
EMBL:BC045392 IPI:IPI00506214 RefSeq:NP_955841.1 UniGene:Dr.3463
SMR:Q7ZTI0 STRING:Q7ZTI0 Ensembl:ENSDART00000041627 GeneID:321504
KEGG:dre:321504 InParanoid:Q7ZTI0 NextBio:20807405 Uniprot:Q7ZTI0
Length = 401
Score = 127 (49.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 49/205 (23%), Positives = 104/205 (50%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L K+ +Q+EY F D +L ++ L + + D +G+VPL + ++KSL ++ ++
Sbjct: 10 LEKKVAEQIEYYFGDHNLPRDKFLKEQLQLD-DGWVPLETMLKFNRLKSLTSEESVIVES 68
Query: 200 L-RSSSKLI-VSNDGKKVRRKH----PFTDKE-REELQSCTVVAENLPEDHSHQNLEKIF 252
L +S + L+ +S D K+RR P ++E R+ L+ ++ + P + + ++++
Sbjct: 69 LLKSKTGLLEISEDKTKIRRDPNKPLPENNEEYRDALKHKSIYMKGFPLETTLDDVKEWL 128
Query: 253 GVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKG 312
G+ + I + P+ K F A++E T+ A KA + +D +N+ KG
Sbjct: 129 ADKGTFENIYLRKGPQKTF---KGSIF------AVLE---TEEAAKAFVERDDIKNF-KG 175
Query: 313 LRVRVLLRCS--PKSVLKTKKSEFE 335
+ V+++ + K + + K++ E
Sbjct: 176 NEMIVMMKDAYFTKKIAERKQNRVE 200
>WB|WBGene00016653 [details] [associations]
symbol:C44E4.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
EMBL:FO080862 GO:GO:0030529 GO:GO:0040027 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
PIR:T30953 RefSeq:NP_491411.1 ProteinModelPortal:O01806 SMR:O01806
STRING:O01806 PaxDb:O01806 EnsemblMetazoa:C44E4.4 GeneID:172070
KEGG:cel:CELE_C44E4.4 UCSC:C44E4.4 CTD:172070 WormBase:C44E4.4
HOGENOM:HOG000022257 InParanoid:O01806 OMA:KSANSEI NextBio:873891
Uniprot:O01806
Length = 396
Score = 126 (49.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 48/210 (22%), Positives = 98/210 (46%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
DD KIIKQ+EY F +++L ++ L + + +D +G+VP++ + + ++ S+ + +A
Sbjct: 10 DDADQKIIKQLEYYFGNINLPRDKFLQEKLKED-DGWVPITTMLNFNRLASISKDTEKIA 68
Query: 198 QALRSS-SKLI-VSNDGKKVRR--KHPFTDKEREELQSC---TVVAENLPEDHSHQNLEK 250
A+++S S +I VS D +K+RR ++P + E Q TV + D ++ +
Sbjct: 69 NAVKNSGSGIISVSEDNQKIRRNEENPVPENSLEYWQKIKHRTVYMKGFSTDTQLDDIIQ 128
Query: 251 IFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEY-ESTDI--AEKAVEKLNDER 307
G + + + + K F++ K E + ++ E + K+ +
Sbjct: 129 WANQFGETENV-LMRRLKPGDRTFKGSVFITYKTREEAEAAQKAEVKFGETELTKMMQDE 187
Query: 308 NWRKGLRVRVLLRCSPKSVLKTKKSEFEGI 337
W + R + K+ K+ K+ E I
Sbjct: 188 YWTLKNKETKEARAANKAA-KSAKNTSEAI 216
>UNIPROTKB|Q5ZKS1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 GeneTree:ENSGT00530000063464 HOGENOM:HOG000006947
OrthoDB:EOG4C2HB3 EMBL:AADN02020271 EMBL:AJ720013 IPI:IPI00599030
UniGene:Gga.42753 UniGene:Gga.53297 SMR:Q5ZKS1 STRING:Q5ZKS1
Ensembl:ENSGALT00000015751 HOVERGEN:HBG059895 InParanoid:Q5ZKS1
Uniprot:Q5ZKS1
Length = 137
Score = 104 (41.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 29/118 (24%), Positives = 63/118 (53%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L +KI +Q+EY F + +L ++ L + + D +G+VPL V+ ++ L + ++ +A
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLD-DGWVPLEVMIKFNRLSRLSKDFGVIVEA 71
Query: 200 LRSSSK--LIVSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEK 250
LR S + ++ D K+RR P D+ + +++ +V + P D + ++++
Sbjct: 72 LRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDATLDDIKE 129
>UNIPROTKB|E2R028 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 CTD:113251
EMBL:AAEX03015048 EMBL:AAEX03015046 EMBL:AAEX03015047
RefSeq:XP_534803.2 Ensembl:ENSCAFT00000013044 GeneID:477609
KEGG:cfa:477609 Uniprot:E2R028
Length = 721
Score = 129 (50.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 39/148 (26%), Positives = 72/148 (48%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLS 164
S D + +G ++ Y I S +S + +DL+ + KQ+E+ FS +L + L
Sbjct: 85 STDGMILGPEDLSYQIYDVS----GESSSAISAEDLKECLKKQLEFCFSRENLSKDLYLI 140
Query: 165 KHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
++ D F+P+ + +M++IK L + L+ + LRSS + V G+KVR H
Sbjct: 141 SQMDSDQ--FIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH----- 193
Query: 225 EREELQSCTVVAENLPEDHSHQNLEKIF 252
+ C V+ +PE + ++ +F
Sbjct: 194 -----KRCIVILREIPETTPIEEVKALF 216
>UNIPROTKB|F1PIU8 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 OMA:WTIANME
EMBL:AAEX03015048 EMBL:AAEX03015046 EMBL:AAEX03015047
Ensembl:ENSCAFT00000013013 Uniprot:F1PIU8
Length = 723
Score = 129 (50.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 39/148 (26%), Positives = 72/148 (48%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLS 164
S D + +G ++ Y I S +S + +DL+ + KQ+E+ FS +L + L
Sbjct: 87 STDGMILGPEDLSYQIYDVS----GESSSAISAEDLKECLKKQLEFCFSRENLSKDLYLI 142
Query: 165 KHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
++ D F+P+ + +M++IK L + L+ + LRSS + V G+KVR H
Sbjct: 143 SQMDSDQ--FIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH----- 195
Query: 225 EREELQSCTVVAENLPEDHSHQNLEKIF 252
+ C V+ +PE + ++ +F
Sbjct: 196 -----KRCIVILREIPETTPIEEVKALF 218
>RGD|1592944 [details] [associations]
symbol:LOC680385 "similar to Sjogren syndrome antigen B"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592944 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 OrthoDB:EOG4C2HB3 IPI:IPI00767397
RefSeq:XP_001058361.1 RefSeq:XP_002726506.1 PRIDE:D3ZLH9
Ensembl:ENSRNOT00000015427 GeneID:680385 KEGG:rno:680385
UCSC:RGD:1592944 OMA:ATESEKC NextBio:718589 Uniprot:D3ZLH9
Length = 402
Score = 125 (49.1 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 50/189 (26%), Positives = 89/189 (47%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+V L + ++ L + +++ QA
Sbjct: 13 LEAKICHQIEYYFGDFNLPQDKFLKEQIKLD-EGWVSLETMIKFNRLNRLTTDFNVIVQA 71
Query: 200 L-RSSSKLI-VSNDGKKVRRK--HPFT---DKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S +KL+ VS D K+RR P D+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKAKLMEVSADKTKIRRSPSRPLPEVMDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTIRI---CHPPESNSSRAKSDFFVSNKLHALV---EYESTDIA----EKAVEK 302
G + I++ H S A D S K +Y+ T++ E K
Sbjct: 132 DDKGQILNIQMRRKLHKTFKGSIFAVFDSIQSAKKFVDTPGQKYKDTNLLILFKEDYFAK 191
Query: 303 LNDERNWRK 311
N+ER K
Sbjct: 192 KNEERKQSK 200
>TAIR|locus:2017809 [details] [associations]
symbol:La2 "La protein 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0009410 "response to xenobiotic stimulus"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 UniGene:At.27554 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 EMBL:BT026473
IPI:IPI00529259 RefSeq:NP_178106.2 UniGene:At.34029
ProteinModelPortal:Q0V7U7 SMR:Q0V7U7 STRING:Q0V7U7 PaxDb:Q0V7U7
PRIDE:Q0V7U7 EnsemblPlants:AT1G79880.1 GeneID:844327
KEGG:ath:AT1G79880 TAIR:At1g79880 HOGENOM:HOG000239251
InParanoid:Q0V7U7 OMA:INGEMER PhylomeDB:Q0V7U7
ProtClustDB:CLSN2680670 Genevestigator:Q0V7U7 Uniprot:Q0V7U7
Length = 399
Score = 123 (48.4 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 37/150 (24%), Positives = 72/150 (48%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHL-- 195
++ K++ QVE+ FSD +L + L++ V K +G V L ++ S ++++L+G ++
Sbjct: 7 EETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNINR 66
Query: 196 ----------LAQALRSSSKLIVSNDGKKVRRKHPFTDKER--EELQSCTVVAENLPEDH 243
+A LR+S L VSN+G+++ R + E E++ T+ A
Sbjct: 67 EDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPFEYSI 126
Query: 244 SHQNLEKIFGVVGSVKTIRICHPPESNSSR 273
+++ F V ++R+ PP R
Sbjct: 127 KMEDVSSFFSQYAKVNSVRL--PPNIADKR 154
>UNIPROTKB|F1P301 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02020271 IPI:IPI01017187
Ensembl:ENSGALT00000038515 ArrayExpress:F1P301 Uniprot:F1P301
Length = 205
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 46/190 (24%), Positives = 89/190 (46%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L +KI +Q+EY F + +L ++ L + + D +G+VPL V+ ++ L + ++ +A
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLD-DGWVPLEVMIKFNRLSRLSKDFGVIVEA 71
Query: 200 LRSSSK--LIVSNDGKKVRRK--HPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
LR S + ++ D K+RR P D+ + +++ +V + P D + ++++
Sbjct: 72 LRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDATLDDIKEWL 131
Query: 253 GVVGSVKTI---RICHPPESNSSRAKSDFFVSNKLHALV---EYESTDIA----EKAVEK 302
G V+ I R S A D S K + +Y+ T++ E+ K
Sbjct: 132 EDKGPVENIQMRRTLQKTFKGSIFAVFDSVESAKKFTEIPNQKYKDTELIVLFKEEYCTK 191
Query: 303 LNDERNWRKG 312
N+ER +G
Sbjct: 192 KNEERKQSRG 201
>UNIPROTKB|H9KZD5 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0022604
"regulation of cell morphogenesis" evidence=IEA] InterPro:IPR000504
SMART:SM00360 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063417 OMA:WTIANME EMBL:AADN02072425
EMBL:AADN02072426 Ensembl:ENSGALT00000009951 Uniprot:H9KZD5
Length = 750
Score = 123 (48.4 bits), Expect = 0.00022, P = 0.00022
Identities = 39/137 (28%), Positives = 65/137 (47%)
Query: 135 VLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNH 194
V T+D+R + KQ+E+ FS +L + L ++ D FVP+ I +M+ IK L +
Sbjct: 114 VSTEDIRECLRKQLEFCFSRENLSKDLYLMSQMDSDQ--FVPIWTIANMEGIKKLTTDMD 171
Query: 195 LLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGV 254
L+ LRSS + V G+KVR H + C ++ +PE + ++ +F
Sbjct: 172 LILDVLRSSPMVQVDETGEKVRPNH----------KRCIIILREIPETTPVEEVKALFKN 221
Query: 255 VGSVKTIRICHPPESNS 271
K I C +N+
Sbjct: 222 ENCPKVIS-CEFAHNNN 237
>UNIPROTKB|F1M4K9 [details] [associations]
symbol:LOC683071 "Protein LOC683071" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 IPI:IPI00952080
Ensembl:ENSRNOT00000065149 Uniprot:F1M4K9
Length = 574
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 36/122 (29%), Positives = 64/122 (52%)
Query: 131 TSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLV 190
+S + T+DL+ + KQ+E FS +L + L ++ D FVP+ I +M++IK L
Sbjct: 6 SSSTISTEDLKECLKKQLESCFSRENLSKDLYLISQMDSDQ--FVPIWTIANMEEIKKLT 63
Query: 191 GNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEK 250
+ L+ + LRSS + V ++G+KVR H + C V+ +PE + ++
Sbjct: 64 TDPDLILEVLRSSPMVQV-DEGEKVRPSH----------KRCIVILREIPETTPVEEVKA 112
Query: 251 IF 252
+F
Sbjct: 113 LF 114
>TAIR|locus:2125334 [details] [associations]
symbol:LARP1c "La related protein 1c" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM]
[GO:0048523 "negative regulation of cellular process" evidence=RCA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010150 "leaf senescence"
evidence=IMP] GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AF370207 EMBL:AY133869 IPI:IPI00542126 RefSeq:NP_567991.1
UniGene:At.23352 UniGene:At.70045 ProteinModelPortal:Q94K80
SMR:Q94K80 PRIDE:Q94K80 EnsemblPlants:AT4G35890.1 GeneID:829743
KEGG:ath:AT4G35890 TAIR:At4g35890 HOGENOM:HOG000151189
InParanoid:Q94K80 OMA:MSPRRIS PhylomeDB:Q94K80
ProtClustDB:CLSN2917672 Genevestigator:Q94K80 Uniprot:Q94K80
Length = 523
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L K+ KQ++Y FSD +L+ + L +N EGFVPL V+ KK+ L N + +A
Sbjct: 369 LHMKLHKQIQYYFSDENLITDIYLRGFMNN--EGFVPLRVVAGFKKVAELTDNIQQIVEA 426
Query: 200 LRSSSKLIVSND 211
L++S + V D
Sbjct: 427 LQNSPHVEVQGD 438
>TAIR|locus:2156912 [details] [associations]
symbol:LARP1b "AT5G66100" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0010150 "leaf senescence"
evidence=IMP] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AY091765 EMBL:AY149955 IPI:IPI00523817
RefSeq:NP_201411.2 UniGene:At.9216 ProteinModelPortal:Q8RWR2
SMR:Q8RWR2 PaxDb:Q8RWR2 PRIDE:Q8RWR2 EnsemblPlants:AT5G66100.1
GeneID:836742 KEGG:ath:AT5G66100 TAIR:At5g66100
HOGENOM:HOG000149120 InParanoid:Q8RWR2 OMA:DQMNDEG PhylomeDB:Q8RWR2
ProtClustDB:CLSN2915016 Genevestigator:Q8RWR2 Uniprot:Q8RWR2
Length = 453
Score = 117 (46.2 bits), Expect = 0.00051, P = 0.00051
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 143 KIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRS 202
KI+ QVEY FS +L +E L +N EG+VP+ VI + +++ L N + +ALRS
Sbjct: 338 KILTQVEYYFSADNLSRDEHLRDQMND--EGWVPVRVIAAFRRLAELTNNIQTILEALRS 395
Query: 203 SSKLIVSNDGKKVRRK 218
S +V G+ +RR+
Sbjct: 396 SE--VVEIQGETLRRR 409
>DICTYBASE|DDB_G0289333 [details] [associations]
symbol:DDB_G0289333 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289333 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
EMBL:AAFI02000139 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 RefSeq:XP_636262.1
ProteinModelPortal:Q54HN9 EnsemblProtists:DDB0188365 GeneID:8627081
KEGG:ddi:DDB_G0289333 InParanoid:Q54HN9 OMA:YADMIAM
ProtClustDB:CLSZ2846640 Uniprot:Q54HN9
Length = 621
Score = 117 (46.2 bits), Expect = 0.00080, P = 0.00080
Identities = 39/145 (26%), Positives = 70/145 (48%)
Query: 119 VISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLS 178
+ISS S T +N+ L I KQ+EY S +L + L+ +N E FV +
Sbjct: 1 MISSSSSTTTPITPQNLEGKALEDAIKKQIEYYLSRENLSTDYYLTSRMNN--EMFVAIE 58
Query: 179 VIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAEN 238
VI + K +K+L + +L+ + + SS +I+ D K K F +LQ ++ +
Sbjct: 59 VIANFKMVKNLTTDMNLIVEVMSKSSNVII--DETKTLIKPSF------KLQRNIIILRD 110
Query: 239 LPEDHSHQNLEKIFGVVG-SVKTIR 262
+P + + + IF G ++ ++R
Sbjct: 111 IPTETPVEEIRGIFSETGKTISSVR 135
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 442 355 0.00080 117 3 11 23 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 67
No. of states in DFA: 602 (64 KB)
Total size of DFA: 227 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.15u 0.14s 31.29t Elapsed: 00:00:02
Total cpu time: 31.15u 0.14s 31.29t Elapsed: 00:00:02
Start: Sat May 11 07:00:54 2013 End: Sat May 11 07:00:56 2013