BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046325
(442 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 98/173 (56%), Gaps = 16/173 (9%)
Query: 133 KNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGN 192
K VL D I KQV++ F D +L ++ L + + K +G+V +S++ S K+K L +
Sbjct: 26 KQVLAD-----IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 80
Query: 193 NHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L+A+AL+SSS + + +G ++RRK P ++ ++E + TV E LP++ +H +E++F
Sbjct: 81 GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDEEER-TVYVELLPKNVTHSWIERVF 139
Query: 253 GVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
G G+V I I H + + A VE+E+ + A KA+E LN+
Sbjct: 140 GKCGNVVYISIPHYKSTGDPKG----------FAFVEFETKEQAAKAIEFLNN 182
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 16/173 (9%)
Query: 133 KNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGN 192
K VL D I KQV++ F D +L + L + + K +G+V +S++ S K+K L +
Sbjct: 27 KQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 81
Query: 193 NHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L+A+AL+SSS + + +G ++RRK P ++ ++E + TV E LP++ +H +E++F
Sbjct: 82 GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVF 140
Query: 253 GVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
G G+V I I H + + A VE+E+ + A KA+E LN+
Sbjct: 141 GKCGNVVYISIPHYKSTGDPKG----------FAFVEFETKEQAAKAIEFLNN 183
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 16/173 (9%)
Query: 133 KNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGN 192
K VL D I KQV++ F D +L + L + + K +G+V +S++ S K+K L +
Sbjct: 32 KQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 86
Query: 193 NHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L+A+ALRSS+ + + +G ++RRK P ++ ++E + TV E LP++ +H +E++F
Sbjct: 87 GKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDER-TVYVELLPKNVNHSWIERVF 145
Query: 253 GVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
G G+V I I H + + A VE+E+ + A KA+E LN+
Sbjct: 146 GKCGNVVYISIPHYKSTGDPKG----------FAFVEFETKEQAAKAIEFLNN 188
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 16/173 (9%)
Query: 133 KNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGN 192
K VL D I KQV++ F D +L + L + + K +G+V +S++ S K+K L +
Sbjct: 32 KQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 86
Query: 193 NHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L+A+ALRSS+ + + +G ++RRK P ++ ++E + TV E LP++ +H +E++F
Sbjct: 87 GKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDER-TVYVELLPKNVNHSWIERVF 145
Query: 253 GVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
G G+V I I H + + A VE+E+ + A KA+E LN+
Sbjct: 146 GKCGNVVYISIPHYKSTGDPKG----------FAFVEFETKEQAAKAIEFLNN 188
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 97/166 (58%), Gaps = 11/166 (6%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L A I KQV++ F D++L + L + + K +G++ +S++ S K+K + ++ L+A+A
Sbjct: 36 LLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARA 95
Query: 200 LRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVK 259
+++SS + ++ G K+RR+ P +K +++ S TV E LP++ +H +E++FG G V
Sbjct: 96 VKNSSVVEINLSGTKIRRRFPLGEKP-QDVDSRTVYVELLPKNVTHSWIERVFGKYGMVV 154
Query: 260 TIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
+ I P S+ F A +E+E+ + A KA+E LN+
Sbjct: 155 YVSI---PRYKSTGDPKGF-------AFIEFETQEQAAKAIEVLNN 190
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 97/166 (58%), Gaps = 11/166 (6%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L + + KQVE+ F D++L + + + + +G++ ++V+ + ++K+L + L+A+A
Sbjct: 42 LLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARA 101
Query: 200 LRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVK 259
L++S+ + V+++G ++RRK P + + ++ S TV E LP+ +H LE++F G V
Sbjct: 102 LKNSTIVEVNDEGTRIRRKEPLGETPK-DVDSRTVYVELLPKTVTHIWLERVFSKCGHVV 160
Query: 260 TIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
I I P S+R F A VE+E+ + A+KAVE LN+
Sbjct: 161 YISI---PRYKSTRHSKGF-------AFVEFETQEQAQKAVEMLNN 196
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 21/190 (11%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
++L K++ Q+E+ FSD +L + L KHV ++ G+V + ++ S KK+K L + A
Sbjct: 90 EELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENL-----------PEDHSH- 245
AL+ S L ++ D +KVRR P E L S ++ +L P+ +
Sbjct: 150 HALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWALATPQKNGRV 209
Query: 246 -----QNLEKIFGVVGSVKTIRICHPPES---NSSRAKSDFF-VSNKLHALVEYESTDIA 296
++L K+FG G + ++RI P + R S + V + A+VE+E D A
Sbjct: 210 QEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAA 269
Query: 297 EKAVEKLNDE 306
KA E + E
Sbjct: 270 IKAHEFMVTE 279
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 21/202 (10%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
++L K++ Q+E+ FSD +L + L KHV ++ G+V + ++ S KK+K L + A
Sbjct: 90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENL-----------PEDHSH- 245
AL+ S L ++ D +KVRR P E L S ++ +L P+ +
Sbjct: 150 HALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRV 209
Query: 246 -----QNLEKIFGVVGSVKTIRICHPPES---NSSRAKSDFF-VSNKLHALVEYESTDIA 296
++L K+FG G + ++RI P + R S + V + A+VE+E + A
Sbjct: 210 QEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAA 269
Query: 297 EKAVEKLNDERNWRKGLRVRVL 318
KA E + E ++ ++ ++
Sbjct: 270 IKAHEFMITESQGKENMKAVLI 291
>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2
Length = 719
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 16/148 (10%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLS 164
SAD + +G ++ Y + S +S + T+DL+ + KQ+E+ FS +L + L
Sbjct: 84 SADGMILGPEDLSYQLYDVS----GESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLI 139
Query: 165 KHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
++ D FVP+ + +M++IK L N L+ + LRSS + V G+KVR H
Sbjct: 140 SQMDSD--QFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKVRPSH----- 192
Query: 225 EREELQSCTVVAENLPEDHSHQNLEKIF 252
+ C V+ +PE + ++ +F
Sbjct: 193 -----KRCIVILREIPETTPVEEVKALF 215
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 105 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLS 164
S D + +G ++ Y I V+ SN++ V T+DL+ + KQ+E+ FS +L + L
Sbjct: 88 STDGMILGPEDLSYQIYD--VSGESNSA--VSTEDLKECLKKQLEFCFSRENLSKDLYLI 143
Query: 165 KHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDK 224
++ D F+P+ + +M++IK L + L+ + LRSS + V G+KVR H
Sbjct: 144 SQMDSD--QFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH----- 196
Query: 225 EREELQSCTVVAENLPEDHSHQNLEKIF 252
+ C V+ +PE + ++ +F
Sbjct: 197 -----KRCIVILREIPETTPIEEVKGLF 219
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%), Gaps = 6/92 (6%)
Query: 131 TSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLV 190
TS+NV L A I+Q+EY F D +L ++ L + ++KD EG+VP+ V+ + K++KSL
Sbjct: 36 TSENV--SKLEASTIRQLEYYFGDANLARDKFLQEQISKD-EGWVPVDVLLTFKRLKSLS 92
Query: 191 GNNHLLAQAL-RSSSKLI-VSNDGKKVRRKHP 220
+ ++ A+ +S LI VS D +K+RR HP
Sbjct: 93 EDKKVIVDAIEKSDEGLIEVSEDREKLRR-HP 123
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 144 IIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQAL-RS 202
II+QVEY F D +L ++ L + + K+ +G+VPLSV+ + K++ SL + + AL +S
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
Query: 203 SSKLIVSNDGKKVRRKHP------FTDKEREELQSCTVVAENLPED 242
L+ ++ K R+HP ++ R+E+Q T A+ P D
Sbjct: 114 EEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLD 159
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 8/131 (6%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL + ++ L + +++ QA
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 200 L-RSSSKLI-VSNDGKKVRR--KHPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S +KL+ VS D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTIRI 263
G + I++
Sbjct: 132 DDKGQILNIQM 142
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 136 LTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHL 195
T ++ + +KQVE+ FS+ + + L K+ +G+VP+S I + ++K + +
Sbjct: 25 FTPEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKN-DGWVPISTIATFNRMKKYRPVDKV 83
Query: 196 LAQALRSSSKLIVSNDGKKVRRKHPF----TDKEREELQSCTVVAENLPED--------H 243
+ +ALRSS L VS DG+ V+R+ P R E T+ N P +
Sbjct: 84 I-EALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHEDVEASQIPE 142
Query: 244 SHQNLEKIFGVVGSVKTIRI 263
+NLE F +G + +R+
Sbjct: 143 LQENLEAFFKKLGEINQVRL 162
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 22/187 (11%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL ++ ++ L + +++ +A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 200 L-RSSSKLI-VSNDGKKVRR--KHPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S ++L+ +S D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAALDDIKEWL 131
Query: 253 ---GVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVE-----YESTDI----AEKAV 300
G V +++ R H S A D S K VE Y+ TD+ E
Sbjct: 132 EDKGQVLNIQMRRTLHKAFKGSIFAVFDSIESAK--KFVETPGQKYKDTDLLILFKEDYF 189
Query: 301 EKLNDER 307
K N+ER
Sbjct: 190 TKKNEER 196
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 8/131 (6%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL + ++ L + +++ QA
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 200 L-RSSSKLI-VSNDGKKVRR--KHPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S + L+ VS D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTIRI 263
G + I++
Sbjct: 132 DDKGQILNIQM 142
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L AKI Q+EY F D +L ++ L + + D EG+VPL ++ ++ L + +++ +A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 200 L-RSSSKLI-VSNDGKKVRR--KHPF---TDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
L +S ++L+ +S D K+RR P TD+ + ++++ +V + P D + ++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 253 GVVGSVKTIRI 263
G V I++
Sbjct: 132 EDKGQVLNIQM 142
>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1527.03 PE=1 SV=1
Length = 475
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 139 DLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQ 198
D++A + Q+EY FS +L + L KH+ D EG+VPL+ + S +IKS + +LL
Sbjct: 324 DVQAFLTSQLEYYFSIENLCKDMFLRKHM--DDEGYVPLAFLASFNRIKSFSTDLNLLHA 381
Query: 199 ALRSSSKLIVSNDGK-----KVRRKHPFT 222
A ++S + V+ D + KVRRK ++
Sbjct: 382 ACKASDIIDVAIDLQSPMSIKVRRKETWS 410
>sp|P87058|LAH1_SCHPO La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sla1 PE=1 SV=1
Length = 298
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 17/166 (10%)
Query: 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR 201
A+++KQVE+ FSD +L ++ L K+ +G+VP+ I + K+++ ++ ALR
Sbjct: 65 AEVLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPIQTIANFKRMRRFQPLEAIV-NALR 122
Query: 202 SSSKLI-VSNDGKKVRRKHPFTDKEREELQSCTVVAENLPE--DHSHQNLEKIFGV-VGS 257
S +L+ V G+KVRR P + + + +V + + D + LEK F G
Sbjct: 123 KSPELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENAGP 182
Query: 258 VKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL 303
+ +R+ + + K F VE++ D+A K +EK+
Sbjct: 183 ISAVRMRR---DDDKKFKGSVF--------VEFKEPDVANKFLEKV 217
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
++ I KQVEY FS +L + L + + DPEG++P+++I S ++ +L + ++ A
Sbjct: 729 IKEAIKKQVEYYFSVDNLTGDFFLRRKM--DPEGYIPVTLIASFHRVLALTTDVAVIVNA 786
Query: 200 LRSSSKLIVSNDGKKVRRK 218
++ S KL + +G KVR K
Sbjct: 787 IKESDKLELF-EGYKVRTK 804
>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505
PE=1 SV=2
Length = 1531
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 87/194 (44%), Gaps = 29/194 (14%)
Query: 134 NVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNN 193
N+ D L+ + Q+EY FS +L + L ++ D +VP+ + ++ L +
Sbjct: 262 NIPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSD--QYVPIYTVARFNLVRKLTNDI 319
Query: 194 HLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFG 253
+L+ + LR S + V + G +VR +++R C ++ + + +++ +F
Sbjct: 320 NLITEVLRESPNVQVDDKGLRVR-----PNRKR-----CIIILREISNNTPLDDVKALF- 368
Query: 254 VVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGL 313
+ C P S A + ++++ +ES + A+KA + L +E +G
Sbjct: 369 ------SNESCPRPISCEFAANNSWYIT--------FESDEDAQKAYKYLREEVKEFQGK 414
Query: 314 RVRVLLRCSPKSVL 327
++ R PKS +
Sbjct: 415 --PIMARIKPKSFI 426
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQA 199
L+ I +Q+EY FS +L + L + D +GF+P+S+I +++++L N +L+ +A
Sbjct: 215 LKEYIKRQIEYYFSVENLERDFFLRGKM--DEQGFLPISLIAGFQRVQALTTNLNLILEA 272
Query: 200 LRSSSKLIVSNDGKKVRRK 218
L+ S+++ + ++ K+R+K
Sbjct: 273 LKDSTEVEIVDE--KMRKK 289
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 127 MPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKI 186
M N K L DL KI +Q+EY F D +L ++ L + V D G+VPL + ++
Sbjct: 1 MAENGDKEQL--DLDTKICEQIEYYFGDHNLPRDKFLKQQVLLD-NGWVPLETMIKFNRL 57
Query: 187 KSLVGNNHLLAQAL-RSSSKLIVSNDGK-KVRR 217
L + +++ QAL +S ++L+ N+ K K+RR
Sbjct: 58 SKLTTDFNIILQALKKSKTELLEINEEKCKIRR 90
>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRO9 PE=1 SV=2
Length = 434
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 144 IIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKI--KSLVGNNHLLAQALR 201
I +Q+EY FS+ +L + L ++KD GF PLS+I ++ S G+ +L+ ALR
Sbjct: 265 IARQIEYYFSEENLTVDNYLRSKLSKD--GFAPLSLISKFYRVVNMSFGGDTNLILAALR 322
Query: 202 SSSKLIVSNDGKKV 215
IV+N+ V
Sbjct: 323 E----IVANEAATV 332
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1
Length = 363
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYES 292
V N+P D S Q + +IF VG VKT ++ PE+ S + + E+
Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKG----------YGFCEFFD 57
Query: 293 TDIAEKAVEKLNDERNWRKGLRV 315
++ AV KLN+ + +RV
Sbjct: 58 SETTAMAVRKLNNSELGPRKIRV 80
>sp|A8WLV5|EIF3G_CAEBR Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis briggsae GN=eif-3.G.1 PE=3 SV=2
Length = 261
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 202 SSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI 261
S + L + DG+++ R R + +C V NLP++ + L +FG +G V I
Sbjct: 160 SKNALGLRGDGRQMERN-------RSDENTCRVT--NLPQEMNEDELRDVFGRIGRVIRI 210
Query: 262 RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRV 315
I A+ K A V +ES D A +A+ +LND R + L+V
Sbjct: 211 FI----------ARDKITGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKV 254
>sp|Q12034|SLF1_YEAST Protein SLF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SLF1 PE=1 SV=1
Length = 447
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 144 IIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKI--KSLVGNNHLLAQALR 201
I Q+E+ FS+ +L +E L K +GF+P+S+IG ++ SL G+ +L+ ++R
Sbjct: 275 IKNQIEFYFSEENLKTDEFLRSKFKKANDGFIPMSLIGKFYRMVNLSLGGDPNLILASMR 334
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 211 DGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESN 270
DG+++ D+ R + +C V NLP++ + L +FG +G V I I
Sbjct: 164 DGRQI-------DRNRSDENTCRVT--NLPQEMNEDELRDLFGKIGRVIRIFI------- 207
Query: 271 SSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRV 315
A+ K A V +ES D A +A+ +LND R + L+V
Sbjct: 208 ---ARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKV 249
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALV 288
+ S V + LPE S Q+L +IF VG V IR+C ++N+ R+ S +A V
Sbjct: 8 ISSSLYVGDLLPE-VSEQHLFEIFNQVGLVSNIRVCR--DTNTRRSLS--------YAYV 56
Query: 289 EYESTDIAEKAVEKLNDERNWRKGLRV 315
Y + AE+A++ LN+ K R+
Sbjct: 57 NYYNGADAERALDTLNNTPIRGKACRI 83
>sp|Q6A0A2|LAR4B_MOUSE La-related protein 4B OS=Mus musculus GN=Larp4b PE=1 SV=2
Length = 741
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
+D R + K +E+ S +L ++ L ++ D +VP++ + ++ IK L + L+
Sbjct: 156 EDPREVLKKTLEFCLSRENLASDMYLISQMDSD--QYVPITTVANLDHIKKLSTDVDLIV 213
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
+ LRS + V G+KVR C V+ + E + +E +F
Sbjct: 214 EVLRSLPLVQVDEKGEKVRPNQ----------NRCIVILREISESTPVEEVEALF 258
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 139 DLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQ 198
D KI +Q+EY F D +L ++ L + + D +G+VPL + ++ L + + + Q
Sbjct: 12 DSDTKICEQIEYYFGDHNLPRDKFLKQQILLD-DGWVPLETMIKFNRLSKLTTDFNTILQ 70
Query: 199 AL-RSSSKLIVSNDGK-KVRR 217
AL +S ++L+ N+ K K+RR
Sbjct: 71 ALKKSKTELLEINEEKCKIRR 91
>sp|Q92615|LAR4B_HUMAN La-related protein 4B OS=Homo sapiens GN=LARP4B PE=1 SV=3
Length = 738
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLA 197
+D R + K +E+ S +L ++ L ++ D +VP++ + ++ IK L + L+
Sbjct: 154 EDPREVLKKTLEFCLSRENLASDMYLISQMDSD--QYVPITTVANLDHIKKLSTDVDLIV 211
Query: 198 QALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIF 252
+ LRS + V G+KVR C V+ + E + +E +F
Sbjct: 212 EVLRSLPLVQVDEKGEKVRPNQ----------NRCIVILREISESTPVEEVEALF 256
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALV 288
L CT+ +NL D + + L+++F VG+VK+ I + + K+ +S V
Sbjct: 727 LPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSI------SKKKNKAGVLLSMGF-GFV 779
Query: 289 EYESTDIAEKAVEKLNDERNWRKGLRVRVLLRCSPKSVLKTKKSE 333
EY + A+KA+++L L VR+ R + +V +K +
Sbjct: 780 EYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQ 824
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 234 VVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYEST 293
++ +NLP + + ++++K+FG GS+KT+R+ P + NS ++ A EY S
Sbjct: 705 ILIKNLPFEATKKDVQKLFGAFGSLKTVRV--PKKFNS---------ESRGFAFAEYVSA 753
Query: 294 DIAEKAVEKL 303
AE A+ L
Sbjct: 754 KEAEHAMSAL 763
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYE 291
C V NLP S +NL +F +GSV RI + P S K +V++E
Sbjct: 311 CIYVG-NLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRS-----------KGFGVVQFE 358
Query: 292 STDIAEKAVEKLNDERNWRKGLRVRVLLRCSPKSVLKTKKS 332
+ + A ++EKLN R + L++ +P + T S
Sbjct: 359 NENDAASSIEKLNGYRYGGRPLQLSYAHYATPLPAVPTVLS 399
>sp|B3QY45|NUOD2_CHLT3 NADH-quinone oxidoreductase subunit D 2 OS=Chloroherpeton
thalassium (strain ATCC 35110 / GB-78) GN=nuoD2 PE=3
SV=1
Length = 399
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 125 VAMPSNTSKNVLTDDLRAKIIKQVEYQFS-DMSLLANETLSKHVNKDPEGFVPLSVIGSM 183
VA+P + +V+ D L +++ +E S M + + K N DP VP
Sbjct: 270 VAVPDGKA-SVIGDCLSRHLVRAIEIDESLKMIEQCIDMMPKDPNFDPHAAVP------- 321
Query: 184 KKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDH 243
K++K G + +A R + +DGK PF K R SC V LPE
Sbjct: 322 KRVKPKAGEVYARGEAPRGELGFYIISDGKGTT---PFRCKAR---SSCFVNLSLLPEMA 375
Query: 244 SHQNLEKIFGVVGSVKTI 261
Q + + ++GSV +
Sbjct: 376 KGQYIADVVAIIGSVDIV 393
>sp|A8NS61|EIF3G_BRUMA Eukaryotic translation initiation factor 3 subunit G OS=Brugia
malayi GN=Bm1_08615 PE=3 SV=1
Length = 287
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 226 REELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLH 285
R E +C V NLPE+ L +FG VG+V + I +N +
Sbjct: 204 RSEENTCRVT--NLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKG----------F 251
Query: 286 ALVEYESTDIAEKAVEKLN 304
A V +E E A++KLN
Sbjct: 252 AFVTFEHRSQTEAAIQKLN 270
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 227 EELQSCTVVAE----NLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSN 282
EE QS TV A +L S +L IF +G+V +IR+C + +S
Sbjct: 26 EENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLG-------- 77
Query: 283 KLHALVEYESTDIAEKAVEKLN 304
+A V + D A+ A+EKLN
Sbjct: 78 --YAYVNFNDHDAAKTAIEKLN 97
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 212 GKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNS 271
G +RR+ D+ + V +NLP++ L K FG G + + + NS
Sbjct: 209 GHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS 268
Query: 272 SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304
+ V +E T+ A AVEK+N
Sbjct: 269 -----------RCFGFVNFECTEAAASAVEKMN 290
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHA 286
++ + C V NL + + L + FG GS+ +RI P++N + A
Sbjct: 266 QDTKRCVFVG-NLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKG----------FA 314
Query: 287 LVEYESTDIAEKAVEKLNDERNWRKGLRVRVLLRCS--PKSVLKTKKSE 333
++++ T +KA+ L +E+ +G +R++ S PKS+ ++K+ +
Sbjct: 315 YIQFKDTMGVDKAL--LLNEKKMPEGRTLRIMRAKSTKPKSITRSKRGD 361
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 212 GKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNS 271
GK + +K + E + + +N+ ++S ++L+K+F G++ +I + E S
Sbjct: 213 GKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKS 272
Query: 272 SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
K V YE + A KAVE+LND
Sbjct: 273 -----------KGFGFVNYEGHEAAVKAVEELND 295
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 248 LEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304
L +IF +G V +IR+C S S +A V Y + EKA+E+LN
Sbjct: 68 LFEIFSPIGQVSSIRVCRDAVSKKSLG----------YAYVNYHKMEDGEKAIEELN 114
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALV 288
+ CT+ +NL + + L+ +F VG++K+ I + + K+ +S V
Sbjct: 719 IPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTI------SKKKNKAGVLLSMGF-GFV 771
Query: 289 EYESTDIAEKAVEKLNDERNWRKGLRVRVLLRCSPKSVLKTKKSE 333
EY+ + A+KA+++L L VR+ R + ++ T+K +
Sbjct: 772 EYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQ 816
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 212 GKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNS 271
G +RR+ D + + V +NL E + +L+ FG G + + + E S
Sbjct: 197 GPFLRRQE--RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKS 254
Query: 272 SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN----DERNWRKG 312
K V +E+ D A +AVE LN D++ W G
Sbjct: 255 -----------KGFGFVNFENADDAARAVESLNGHKFDDKEWYVG 288
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 212 GKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNS 271
GK +R + D + + +NL E H+ L F G++ + ++ S
Sbjct: 104 GKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQS 163
Query: 272 SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLLR 320
K + V+Y + + A+KA+EKLN K + V LR
Sbjct: 164 -----------KGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR 201
>sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3 subunit G
OS=Dictyostelium discoideum GN=eif3G PE=3 SV=1
Length = 233
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYES 292
+++ NL ++ + ++L ++FG G V + I P+S S+K A V Y
Sbjct: 153 SIMVSNLSQNATEKDLYELFGQFGPVSRVSI---PKSMEG--------SSKGFAYVTYNH 201
Query: 293 TDIAEKAVEKLNDER 307
D AEKA+++LN R
Sbjct: 202 LDSAEKALKQLNGHR 216
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 223 DKEREELQSCTVVAEN--------LPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRA 274
D+ EE + VAEN L + L +IF +G V +IR+C S S
Sbjct: 35 DQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLG 94
Query: 275 KSDFFVSNKLHALVEYESTDIAEKAVEKLN 304
+A V Y + EKA+E+LN
Sbjct: 95 ----------YAYVNYHKYEDGEKAIEELN 114
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 248 LEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304
L +IF +G V +IR+C S S +A V Y + EKA+E+LN
Sbjct: 83 LFEIFSPIGQVASIRVCRDAVSKKSLG----------YAYVNYHKLEDGEKAIEELN 129
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 197 AQALRSSSKLIVSND-----GKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKI 251
AQA S ++ ND GK V +K + E + + +N+ ++ + E++
Sbjct: 208 AQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEEL 267
Query: 252 FGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
F G + +I + E S K V +E + A KAVE+LND
Sbjct: 268 FAPFGKITSIYLEKDAEGKS-----------KGFGFVNFEEHEAAAKAVEELND 310
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 212 GKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNS 271
GK + +K + E + V A+N+ D S + +K+F G + +I + E S
Sbjct: 212 GKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKS 271
Query: 272 SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305
K V +E+ + A KAV++LND
Sbjct: 272 -----------KGFGFVNFENHESAVKAVDELND 294
>sp|Q874L7|MAD1_KLUDE Spindle assembly checkpoint component MAD1 OS=Kluyveromyces
delphensis GN=MAD1 PE=3 SV=1
Length = 674
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 7/145 (4%)
Query: 5 KKKKKRHQTKQETKILMAQAHAEKIEEDIVNNQEKEIMKINNNTTSNNNNGNISTSSSSA 64
K+K+ R ++++ +L Q A K E D++ ++ KE++ + N T NN N I T SA
Sbjct: 498 KEKRIRILQQRDSPLLKIQ-FARKQELDLLKDENKELLSLIENVTENNQN-RIDTIPLSA 555
Query: 65 SAPFKFNV-QAPEFVPRSHTQMPISGYYY--PCFQYIG--GTATGSADWIFVGDQEPVYV 119
+F Q+ E V + Q+ Y ++I + G + + +Y
Sbjct: 556 YKSLEFQYQQSQENVVKGEKQLSRLKQIYNKKSLEFIDIVNSMLGFRLEFMLDGRVKIYS 615
Query: 120 ISSPSVAMPSNTSKNVLTDDLRAKI 144
P + +N N L +L A I
Sbjct: 616 CYKPDKYLIANLIDNTLKSNLDAII 640
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,564,939
Number of Sequences: 539616
Number of extensions: 6819011
Number of successful extensions: 74306
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 57452
Number of HSP's gapped (non-prelim): 15396
length of query: 442
length of database: 191,569,459
effective HSP length: 121
effective length of query: 321
effective length of database: 126,275,923
effective search space: 40534571283
effective search space used: 40534571283
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)