Query 046325
Match_columns 442
No_of_seqs 350 out of 1932
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 10:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1855 Predicted RNA-binding 100.0 1.4E-66 3.1E-71 524.4 23.9 371 62-433 27-470 (484)
2 cd08036 LARP_5 La RNA-binding 99.9 1.2E-28 2.7E-33 197.4 5.2 74 142-217 2-75 (75)
3 cd08035 LARP_4 La RNA-binding 99.9 9.4E-29 2E-33 199.1 4.5 75 141-217 1-75 (75)
4 cd08032 LARP_7 La RNA-binding 99.9 1.6E-28 3.4E-33 201.6 5.8 80 138-217 3-82 (82)
5 cd08033 LARP_6 La RNA-binding 99.9 3E-28 6.4E-33 198.0 4.5 76 142-217 2-77 (77)
6 KOG2591 c-Mpl binding protein, 99.9 2.3E-26 4.9E-31 238.8 15.5 170 129-327 85-260 (684)
7 smart00715 LA Domain in the RN 99.9 3.2E-27 7E-32 193.5 4.7 80 138-218 1-80 (80)
8 cd08029 LA_like_fungal La-moti 99.9 4.2E-27 9.2E-32 190.9 4.7 75 142-217 2-76 (76)
9 cd08028 LARP_3 La RNA-binding 99.9 6.5E-27 1.4E-31 192.3 5.1 79 138-217 2-82 (82)
10 cd08031 LARP_4_5_like La RNA-b 99.9 4.8E-27 1E-31 190.0 4.0 74 142-217 2-75 (75)
11 cd08030 LA_like_plant La-motif 99.9 1E-26 2.2E-31 193.8 4.8 77 141-217 2-90 (90)
12 cd08037 LARP_1 La RNA-binding 99.9 2.8E-26 6E-31 184.2 4.4 72 142-217 2-73 (73)
13 cd08038 LARP_2 La RNA-binding 99.9 2.9E-26 6.3E-31 184.1 4.4 72 142-217 2-73 (73)
14 cd08034 LARP_1_2 La RNA-bindin 99.9 8.2E-26 1.8E-30 181.9 4.3 73 141-217 1-73 (73)
15 cd07323 LAM LA motif RNA-bindi 99.9 5.6E-25 1.2E-29 178.2 4.9 74 142-217 2-75 (75)
16 PF05383 La: La domain; Inter 99.9 6.3E-23 1.4E-27 160.0 1.7 60 144-203 1-61 (61)
17 KOG4213 RNA-binding protein La 99.8 1.2E-21 2.5E-26 180.1 7.5 154 137-303 10-170 (205)
18 PLN03134 glycine-rich RNA-bind 99.6 4.9E-15 1.1E-19 134.0 13.2 82 230-321 33-114 (144)
19 TIGR01659 sex-lethal sex-letha 99.6 1.4E-14 3E-19 148.3 17.1 115 192-320 158-274 (346)
20 TIGR01648 hnRNP-R-Q heterogene 99.5 8.7E-13 1.9E-17 142.6 16.7 77 230-324 232-310 (578)
21 COG5193 LHP1 La protein, small 99.5 3E-14 6.4E-19 144.9 3.8 148 144-301 75-244 (438)
22 KOG0105 Alternative splicing f 99.4 7.4E-13 1.6E-17 123.3 9.9 77 230-319 5-81 (241)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.3E-12 2.9E-17 131.7 10.2 81 231-321 269-349 (352)
24 PF00076 RRM_1: RNA recognitio 99.4 1.6E-12 3.4E-17 100.2 7.3 70 234-314 1-70 (70)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 2.8E-12 6E-17 129.3 9.7 81 231-321 3-83 (352)
26 KOG0107 Alternative splicing f 99.3 2.5E-11 5.5E-16 112.1 14.0 77 231-322 10-86 (195)
27 TIGR01659 sex-lethal sex-letha 99.3 4.4E-12 9.5E-17 130.0 10.0 81 230-320 106-186 (346)
28 KOG0121 Nuclear cap-binding pr 99.3 5.4E-12 1.2E-16 111.4 7.4 82 228-319 33-114 (153)
29 PLN03120 nucleic acid binding 99.3 2E-11 4.4E-16 119.8 9.9 77 230-320 3-79 (260)
30 KOG0130 RNA-binding protein RB 99.3 1.4E-11 2.9E-16 109.8 7.5 91 227-327 68-158 (170)
31 TIGR01645 half-pint poly-U bin 99.2 1.2E-10 2.5E-15 126.7 15.5 162 149-322 109-285 (612)
32 KOG0122 Translation initiation 99.2 2.6E-11 5.7E-16 117.0 8.4 82 230-321 188-269 (270)
33 PF14259 RRM_6: RNA recognitio 99.2 7.6E-11 1.6E-15 92.1 7.5 67 234-311 1-67 (70)
34 TIGR01628 PABP-1234 polyadenyl 99.2 8.2E-11 1.8E-15 126.8 9.6 77 233-319 2-78 (562)
35 KOG0117 Heterogeneous nuclear 99.2 1.2E-10 2.6E-15 120.1 10.3 169 137-324 134-334 (506)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.2 2.5E-10 5.4E-15 121.0 12.5 80 231-320 295-374 (509)
37 smart00362 RRM_2 RNA recogniti 99.1 2.3E-10 4.9E-15 86.5 8.5 71 233-315 1-71 (72)
38 TIGR01628 PABP-1234 polyadenyl 99.1 2.7E-10 5.8E-15 122.9 12.0 83 229-322 283-365 (562)
39 KOG0114 Predicted RNA-binding 99.1 2.3E-10 5E-15 97.9 8.3 77 230-319 17-93 (124)
40 KOG0113 U1 small nuclear ribon 99.1 2.3E-10 5E-15 113.1 9.4 85 230-324 100-184 (335)
41 TIGR01622 SF-CC1 splicing fact 99.1 2.7E-10 5.9E-15 119.2 10.5 81 228-319 86-166 (457)
42 TIGR01645 half-pint poly-U bin 99.1 1.6E-10 3.4E-15 125.7 8.9 79 230-318 106-184 (612)
43 TIGR01622 SF-CC1 splicing fact 99.1 3.6E-10 7.7E-15 118.4 9.6 80 231-320 186-265 (457)
44 PLN03121 nucleic acid binding 99.1 4.3E-10 9.4E-15 109.2 9.4 76 230-319 4-79 (243)
45 COG0724 RNA-binding proteins ( 99.1 5.7E-10 1.2E-14 103.7 9.2 79 231-319 115-193 (306)
46 smart00360 RRM RNA recognition 99.1 8E-10 1.7E-14 83.0 8.3 70 236-315 1-70 (71)
47 TIGR01648 hnRNP-R-Q heterogene 99.1 8.2E-10 1.8E-14 119.8 11.4 68 230-308 57-124 (578)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 5.3E-10 1.2E-14 119.0 9.5 74 231-320 2-77 (481)
49 KOG4207 Predicted splicing fac 99.0 5.5E-10 1.2E-14 105.8 8.3 80 231-320 13-92 (256)
50 PLN03213 repressor of silencin 99.0 6E-10 1.3E-14 116.1 9.0 77 230-320 9-87 (759)
51 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 9.5E-10 2.1E-14 117.1 9.9 76 230-320 274-350 (481)
52 KOG0111 Cyclophilin-type pepti 99.0 2.2E-10 4.7E-15 109.3 3.8 85 230-324 9-93 (298)
53 cd00590 RRM RRM (RNA recogniti 99.0 2.7E-09 5.9E-14 80.9 9.1 73 233-316 1-73 (74)
54 KOG0131 Splicing factor 3b, su 99.0 5E-10 1.1E-14 104.2 5.6 80 230-319 8-87 (203)
55 KOG0148 Apoptosis-promoting RN 98.9 1.7E-09 3.7E-14 105.9 7.8 75 227-317 160-234 (321)
56 KOG0116 RasGAP SH3 binding pro 98.9 4.2E-09 9.2E-14 110.1 11.1 78 231-321 288-365 (419)
57 KOG0125 Ataxin 2-binding prote 98.9 2.2E-09 4.8E-14 107.4 7.4 81 230-322 95-175 (376)
58 KOG0126 Predicted RNA-binding 98.9 1.6E-10 3.6E-15 107.5 -0.7 84 227-320 31-114 (219)
59 PF13893 RRM_5: RNA recognitio 98.9 6E-09 1.3E-13 78.6 7.8 56 248-318 1-56 (56)
60 KOG0108 mRNA cleavage and poly 98.9 4E-09 8.6E-14 110.9 8.1 82 232-323 19-100 (435)
61 KOG0117 Heterogeneous nuclear 98.9 1.8E-08 3.8E-13 104.3 12.1 80 229-318 81-161 (506)
62 KOG0144 RNA-binding protein CU 98.8 3.8E-09 8.1E-14 108.9 6.5 87 230-327 123-212 (510)
63 KOG0127 Nucleolar protein fibr 98.8 1E-08 2.2E-13 108.1 7.7 82 231-322 292-379 (678)
64 smart00361 RRM_1 RNA recogniti 98.7 2.6E-08 5.7E-13 78.9 7.1 63 245-315 2-69 (70)
65 TIGR01642 U2AF_lg U2 snRNP aux 98.7 2.1E-08 4.5E-13 106.4 8.6 74 227-317 171-256 (509)
66 KOG0123 Polyadenylate-binding 98.7 6.5E-08 1.4E-12 100.2 11.4 127 172-323 23-155 (369)
67 KOG0149 Predicted RNA-binding 98.7 2E-08 4.3E-13 96.8 6.9 77 231-318 12-88 (247)
68 COG5193 LHP1 La protein, small 98.7 3.1E-09 6.8E-14 108.7 0.7 62 140-203 270-331 (438)
69 KOG0144 RNA-binding protein CU 98.7 5.7E-08 1.2E-12 100.3 8.3 89 221-319 24-115 (510)
70 KOG2590 RNA-binding protein LA 98.6 1.6E-08 3.4E-13 106.3 3.8 69 140-217 300-368 (448)
71 KOG0127 Nucleolar protein fibr 98.6 2.2E-07 4.8E-12 98.3 10.5 82 230-322 116-197 (678)
72 KOG0148 Apoptosis-promoting RN 98.6 9.9E-08 2.1E-12 93.7 7.2 81 233-323 64-144 (321)
73 KOG4206 Spliceosomal protein s 98.6 1.5E-07 3.2E-12 90.3 8.0 80 231-323 9-92 (221)
74 KOG4208 Nucleolar RNA-binding 98.6 1.7E-07 3.7E-12 89.0 7.6 82 230-321 48-130 (214)
75 KOG0145 RNA-binding protein EL 98.5 1.7E-07 3.6E-12 91.7 7.6 81 231-321 41-121 (360)
76 KOG0145 RNA-binding protein EL 98.5 2.6E-07 5.6E-12 90.5 8.8 79 231-319 278-356 (360)
77 KOG4212 RNA-binding protein hn 98.5 1.7E-07 3.7E-12 97.0 8.0 79 230-319 43-122 (608)
78 KOG0123 Polyadenylate-binding 98.5 2.6E-07 5.7E-12 95.8 8.2 75 232-322 2-76 (369)
79 KOG0132 RNA polymerase II C-te 98.5 2.9E-07 6.3E-12 100.6 8.8 82 228-325 418-499 (894)
80 KOG0124 Polypyrimidine tract-b 98.5 1.6E-07 3.5E-12 95.3 4.9 77 231-317 113-189 (544)
81 KOG0153 Predicted RNA-binding 98.4 5.6E-07 1.2E-11 91.0 7.7 79 227-322 224-302 (377)
82 KOG0147 Transcriptional coacti 98.4 4E-07 8.6E-12 96.5 6.7 157 152-322 187-359 (549)
83 KOG4212 RNA-binding protein hn 98.3 7.5E-07 1.6E-11 92.3 6.7 74 229-317 534-607 (608)
84 KOG0415 Predicted peptidyl pro 98.3 6.8E-07 1.5E-11 90.6 5.9 80 230-319 238-317 (479)
85 KOG0110 RNA-binding protein (R 98.3 1.5E-06 3.4E-11 94.3 9.0 81 232-319 516-596 (725)
86 KOG4209 Splicing factor RNPS1, 98.2 3.2E-06 7E-11 82.5 7.0 88 225-323 95-182 (231)
87 KOG0109 RNA-binding protein LA 98.2 2.1E-06 4.5E-11 85.3 5.5 71 233-321 4-74 (346)
88 KOG0110 RNA-binding protein (R 98.2 2.5E-06 5.4E-11 92.8 6.6 79 231-319 613-691 (725)
89 KOG0533 RRM motif-containing p 98.2 5.7E-06 1.2E-10 81.2 8.5 81 231-322 83-163 (243)
90 KOG4205 RNA-binding protein mu 98.1 2.2E-06 4.8E-11 86.9 5.1 83 231-324 97-179 (311)
91 KOG0109 RNA-binding protein LA 98.1 4.1E-06 9E-11 83.2 5.6 75 230-322 77-151 (346)
92 KOG4454 RNA binding protein (R 98.1 2.2E-06 4.8E-11 82.3 3.3 80 230-321 8-87 (267)
93 KOG0146 RNA-binding protein ET 98.1 5.4E-06 1.2E-10 81.6 5.5 86 226-321 280-365 (371)
94 KOG0131 Splicing factor 3b, su 98.0 1E-05 2.2E-10 75.8 6.9 84 231-324 96-180 (203)
95 KOG0146 RNA-binding protein ET 98.0 1E-05 2.3E-10 79.7 6.8 80 230-320 18-100 (371)
96 KOG4660 Protein Mei2, essentia 98.0 3.8E-06 8.3E-11 89.3 3.9 72 228-314 72-143 (549)
97 KOG0106 Alternative splicing f 97.9 7.3E-06 1.6E-10 79.1 3.4 68 233-318 3-70 (216)
98 PF08777 RRM_3: RNA binding mo 97.9 4.3E-05 9.2E-10 66.0 7.2 59 232-306 2-60 (105)
99 KOG0124 Polypyrimidine tract-b 97.8 3.1E-05 6.8E-10 79.0 6.5 80 230-319 209-288 (544)
100 KOG1548 Transcription elongati 97.8 4.2E-05 9.1E-10 77.7 7.3 87 228-319 131-219 (382)
101 KOG4661 Hsp27-ERE-TATA-binding 97.8 5.1E-05 1.1E-09 81.1 7.1 82 231-322 405-486 (940)
102 KOG4205 RNA-binding protein mu 97.5 8.8E-05 1.9E-09 75.4 4.7 62 230-301 5-66 (311)
103 PF07145 PAM2: Ataxin-2 C-term 97.5 6.6E-05 1.4E-09 44.9 1.8 17 66-82 2-18 (18)
104 KOG0151 Predicted splicing reg 97.5 0.00014 3.1E-09 79.4 5.5 83 228-317 171-253 (877)
105 KOG1190 Polypyrimidine tract-b 97.4 0.00038 8.3E-09 72.2 7.6 75 231-320 297-372 (492)
106 KOG1457 RNA binding protein (c 97.4 0.00096 2.1E-08 64.7 9.6 83 230-321 33-118 (284)
107 PF11608 Limkain-b1: Limkain b 97.4 0.00097 2.1E-08 55.6 8.0 68 232-319 3-75 (90)
108 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00044 9.6E-09 52.5 5.2 52 232-300 2-53 (53)
109 KOG0147 Transcriptional coacti 97.3 0.00012 2.7E-09 78.0 2.8 80 227-317 175-254 (549)
110 KOG1995 Conserved Zn-finger pr 97.2 0.0014 2.9E-08 67.2 8.2 89 230-323 65-156 (351)
111 PF04059 RRM_2: RNA recognitio 97.2 0.002 4.3E-08 55.1 8.0 67 232-308 2-70 (97)
112 KOG1457 RNA binding protein (c 97.1 0.00071 1.5E-08 65.6 4.8 62 232-307 211-272 (284)
113 KOG0106 Alternative splicing f 97.0 0.00038 8.3E-09 67.3 2.6 69 229-315 97-165 (216)
114 KOG4211 Splicing factor hnRNP- 97.0 0.0019 4.2E-08 68.4 7.3 60 231-303 10-69 (510)
115 KOG4206 Spliceosomal protein s 96.9 0.002 4.4E-08 62.3 6.9 76 228-318 143-219 (221)
116 COG5175 MOT2 Transcriptional r 96.9 0.0021 4.5E-08 65.5 6.8 81 228-317 111-199 (480)
117 KOG4211 Splicing factor hnRNP- 96.6 0.004 8.7E-08 66.1 6.8 136 151-315 30-176 (510)
118 KOG0120 Splicing factor U2AF, 96.5 0.002 4.2E-08 69.2 3.8 81 230-320 288-368 (500)
119 KOG0226 RNA-binding proteins [ 96.5 0.003 6.6E-08 62.2 4.3 77 230-316 189-265 (290)
120 KOG4210 Nuclear localization s 96.3 0.0039 8.5E-08 62.8 4.2 77 230-317 183-260 (285)
121 KOG2314 Translation initiation 96.2 0.011 2.3E-07 63.9 7.2 78 231-319 58-142 (698)
122 KOG4307 RNA binding protein RB 96.2 0.0095 2.1E-07 65.6 6.8 75 232-317 868-943 (944)
123 KOG4849 mRNA cleavage factor I 96.1 0.016 3.4E-07 59.5 7.1 75 231-315 80-156 (498)
124 KOG2202 U2 snRNP splicing fact 96.0 0.0028 6E-08 62.5 1.4 63 246-319 83-146 (260)
125 KOG1190 Polypyrimidine tract-b 95.8 0.0062 1.3E-07 63.5 3.0 60 230-305 27-86 (492)
126 KOG0120 Splicing factor U2AF, 95.8 0.026 5.6E-07 60.8 7.5 60 246-313 424-484 (500)
127 KOG1548 Transcription elongati 95.5 0.032 6.9E-07 57.2 6.8 76 229-318 263-349 (382)
128 KOG3152 TBP-binding protein, a 95.3 0.014 2.9E-07 57.8 3.2 78 230-311 73-156 (278)
129 KOG1456 Heterogeneous nuclear 95.3 0.065 1.4E-06 55.6 8.1 77 230-321 286-363 (494)
130 KOG0105 Alternative splicing f 95.1 0.15 3.3E-06 48.6 9.2 72 231-319 115-186 (241)
131 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.079 1.7E-06 45.6 6.4 75 230-310 5-80 (100)
132 KOG0129 Predicted RNA-binding 94.8 0.066 1.4E-06 57.4 6.7 71 228-304 256-327 (520)
133 PF10309 DUF2414: Protein of u 94.4 0.16 3.4E-06 40.1 6.4 55 231-303 5-62 (62)
134 PF08952 DUF1866: Domain of un 94.2 0.12 2.6E-06 47.3 6.2 72 230-320 26-106 (146)
135 PF12901 SUZ-C: SUZ-C motif; 93.6 0.032 6.9E-07 38.9 1.0 18 414-431 17-34 (34)
136 KOG0129 Predicted RNA-binding 93.5 0.17 3.8E-06 54.3 6.8 62 230-301 369-431 (520)
137 PF15023 DUF4523: Protein of u 93.4 0.3 6.4E-06 44.8 7.2 73 227-317 82-158 (166)
138 KOG0112 Large RNA-binding prot 93.2 0.11 2.5E-06 58.8 5.1 76 230-321 454-531 (975)
139 KOG0128 RNA-binding protein SA 92.9 0.06 1.3E-06 60.7 2.4 80 231-321 736-815 (881)
140 KOG1456 Heterogeneous nuclear 92.6 3 6.6E-05 43.7 13.9 75 231-320 120-198 (494)
141 KOG0112 Large RNA-binding prot 92.0 0.049 1.1E-06 61.6 0.3 80 228-318 369-448 (975)
142 PF09421 FRQ: Frequency clock 92.0 0.12 2.6E-06 59.4 3.3 53 167-219 471-524 (989)
143 KOG2068 MOT2 transcription fac 91.9 0.072 1.6E-06 54.5 1.4 84 229-319 75-161 (327)
144 KOG1365 RNA-binding protein Fu 91.6 0.52 1.1E-05 49.3 7.1 62 231-304 161-227 (508)
145 KOG4574 RNA-binding protein (c 91.5 0.13 2.8E-06 58.1 2.9 71 234-320 301-371 (1007)
146 KOG0128 RNA-binding protein SA 91.2 0.022 4.7E-07 64.0 -3.4 67 229-305 665-731 (881)
147 KOG1996 mRNA splicing factor [ 91.1 0.55 1.2E-05 47.6 6.5 65 245-318 300-364 (378)
148 KOG2416 Acinus (induces apopto 91.0 0.11 2.3E-06 56.7 1.6 64 230-310 443-507 (718)
149 KOG1365 RNA-binding protein Fu 89.9 0.33 7.1E-06 50.7 3.9 65 231-306 280-347 (508)
150 PF08675 RNA_bind: RNA binding 89.3 1.2 2.7E-05 37.3 6.1 54 234-305 11-64 (87)
151 KOG3973 Uncharacterized conser 89.2 0.33 7.1E-06 50.1 3.3 16 134-149 193-208 (465)
152 KOG0115 RNA-binding protein p5 87.2 0.68 1.5E-05 46.1 3.9 67 232-309 32-98 (275)
153 PRK11634 ATP-dependent RNA hel 84.2 6.3 0.00014 44.1 10.2 62 241-321 497-563 (629)
154 PF07576 BRAP2: BRCA1-associat 84.2 6.8 0.00015 34.3 8.3 65 233-309 15-80 (110)
155 KOG4676 Splicing factor, argin 84.1 1.2 2.7E-05 46.7 4.2 78 232-317 8-85 (479)
156 KOG4307 RNA binding protein RB 82.6 0.73 1.6E-05 51.4 2.0 77 231-318 434-511 (944)
157 KOG2135 Proteins containing th 80.0 1.2 2.7E-05 47.7 2.5 77 229-322 370-447 (526)
158 PF03467 Smg4_UPF3: Smg-4/UPF3 79.7 1.8 3.9E-05 40.7 3.3 71 230-308 6-80 (176)
159 PF04847 Calcipressin: Calcipr 77.0 5 0.00011 38.2 5.5 61 244-320 8-70 (184)
160 KOG4285 Mitotic phosphoprotein 76.0 7 0.00015 40.0 6.4 78 230-327 196-273 (350)
161 KOG2193 IGF-II mRNA-binding pr 75.7 3.5 7.5E-05 43.9 4.3 69 233-317 3-72 (584)
162 KOG0804 Cytoplasmic Zn-finger 72.7 7.8 0.00017 41.5 6.0 68 231-310 74-142 (493)
163 PF01885 PTS_2-RNA: RNA 2'-pho 72.4 3.7 8E-05 39.0 3.3 51 169-219 27-82 (186)
164 PF03880 DbpA: DbpA RNA bindin 70.9 20 0.00044 28.6 6.8 58 242-318 12-74 (74)
165 KOG3973 Uncharacterized conser 66.7 9.3 0.0002 39.8 5.0 8 246-253 243-250 (465)
166 KOG2318 Uncharacterized conser 62.5 21 0.00045 39.6 6.8 89 229-318 172-303 (650)
167 PF11767 SET_assoc: Histone ly 57.4 32 0.0007 27.4 5.5 50 242-310 11-60 (66)
168 PF04315 DUF462: Protein of un 57.3 3.9 8.4E-05 38.2 0.3 47 73-126 19-76 (164)
169 KOG2278 RNA:NAD 2'-phosphotran 56.8 8 0.00017 36.7 2.3 49 170-218 30-82 (207)
170 KOG4210 Nuclear localization s 56.3 7.8 0.00017 39.2 2.3 83 230-322 87-169 (285)
171 KOG4660 Protein Mei2, essentia 56.0 22 0.00047 39.1 5.6 29 281-310 429-457 (549)
172 PTZ00146 fibrillarin; Provisio 54.2 26 0.00055 35.8 5.6 7 427-433 67-73 (293)
173 PRK00819 RNA 2'-phosphotransfe 53.6 11 0.00025 35.6 2.8 48 170-219 29-78 (179)
174 PTZ00315 2'-phosphotransferase 53.2 17 0.00036 40.5 4.4 74 134-219 371-456 (582)
175 PF05750 Rubella_Capsid: Rubel 51.5 28 0.00062 33.4 5.1 16 411-426 100-115 (300)
176 KOG2253 U1 snRNP complex, subu 50.7 12 0.00025 41.9 2.7 69 230-317 39-107 (668)
177 KOG4676 Splicing factor, argin 47.3 5.2 0.00011 42.2 -0.6 74 231-319 151-224 (479)
178 PF03468 XS: XS domain; Inter 40.4 44 0.00095 29.4 4.2 50 232-294 9-67 (116)
179 PF07292 NID: Nmi/IFP 35 domai 37.0 27 0.00058 29.5 2.2 61 192-252 6-73 (88)
180 KOG1855 Predicted RNA-binding 36.0 88 0.0019 33.7 6.3 20 249-268 246-265 (484)
181 KOG2590 RNA-binding protein LA 34.7 40 0.00087 36.5 3.6 68 138-205 95-165 (448)
182 KOG0921 Dosage compensation co 34.1 1.2E+02 0.0026 35.9 7.4 10 422-431 1265-1274(1282)
183 KOG4483 Uncharacterized conser 30.2 1.1E+02 0.0024 32.7 5.9 54 231-301 391-445 (528)
184 PTZ00034 40S ribosomal protein 27.0 45 0.00097 29.9 2.1 18 194-211 10-27 (124)
185 PF10567 Nab6_mRNP_bdg: RNA-re 24.6 2.1E+02 0.0046 29.5 6.5 70 229-301 13-82 (309)
186 PRK14548 50S ribosomal protein 23.4 1.7E+02 0.0038 24.4 4.8 57 234-303 23-81 (84)
187 PF15513 DUF4651: Domain of un 23.2 1.6E+02 0.0035 23.4 4.2 20 245-264 8-27 (62)
188 PF02714 DUF221: Domain of unk 23.0 98 0.0021 31.1 3.9 32 286-319 1-32 (325)
189 PF14893 PNMA: PNMA 21.0 73 0.0016 33.2 2.6 25 230-254 17-41 (331)
190 PTZ00070 40S ribosomal protein 21.0 81 0.0018 31.7 2.8 27 361-387 4-30 (257)
191 KOG3172 Small nuclear ribonucl 21.0 1.1E+02 0.0024 26.9 3.2 9 310-318 63-71 (119)
192 TIGR03636 L23_arch archaeal ri 20.8 2.3E+02 0.005 23.2 5.0 56 234-302 16-73 (77)
193 KOG3293 Small nuclear ribonucl 20.7 1E+02 0.0023 27.6 3.1 7 312-318 63-69 (134)
194 KOG3262 H/ACA small nucleolar 20.4 1.1E+02 0.0023 29.6 3.3 24 232-258 81-104 (215)
No 1
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=100.00 E-value=1.4e-66 Score=524.40 Aligned_cols=371 Identities=39% Similarity=0.527 Sum_probs=274.7
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCCCCC---CCCCCCccccCCCC------------C----CCCCceeccCCCC------
Q 046325 62 SSASAPFKFNVQAPEFVPRSHTQMPIS---GYYYPCFQYIGGTA------------T----GSADWIFVGDQEP------ 116 (442)
Q Consensus 62 ~~~~~~~~~n~~apefvpr~~~~~p~~---~~~~p~~~~~~~~~------------~----~~~~~~~~~~~~p------ 116 (442)
+-+...+|+|++||||||| +.++|+. +||++|+|+..... . +.++|.++....+
T Consensus 27 g~s~~~~k~~~q~~~fv~r-~p~~~v~~ve~~~~~~~~~~~~~~~~~~~~v~l~P~~~n~~~~~~~~~~R~~~~~~q~~~ 105 (484)
T KOG1855|consen 27 GDSDPLSKENDQAPEFVQR-HPAPPVDEVERPAVLSEHNLEKFRGHVMGNVYLHPNLGNSPSLSDKRPVRGHGETKQEGG 105 (484)
T ss_pred cccccccccccccchhhhc-CCCCcccccCcccccccccccccccCcCCceecCCCcCCCcccccceeccCCcchhhccC
Confidence 3477899999999999997 4444443 67777776522211 0 1223444333211
Q ss_pred ----c--eeecCCCCCC-----CCCCCCCCCCHHHHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhH
Q 046325 117 ----V--YVISSPSVAM-----PSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKK 185 (442)
Q Consensus 117 ----~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~k 185 (442)
. .++..+.-.. -+..++.++++|+..+|++||||||||+||.+|.||+++|.+|++|||||++|++|+|
T Consensus 106 v~~pqe~e~~~~p~de~~~~~~~s~dsk~~lsedl~~kIv~QVEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKK 185 (484)
T KOG1855|consen 106 VEPPQEKEQEVKPHDEQDTKEIDSLDSKLILSEDLAAKIVDQVEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKK 185 (484)
T ss_pred CCCccccccccCcchhcchhhcccccccccccHHHHHHHHHHhheeeccccccchHHHHHHHhcCCCCceeeehhhhHHH
Confidence 1 1121111110 1234577899999999999999999999999999999999999999999999999999
Q ss_pred HHhhccChHHHHHHhhcCCceEEecCCccccccCCCCchhhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeC
Q 046325 186 IKSLVGNNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICH 265 (442)
Q Consensus 186 mK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRRk~Pl~e~~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r 265 (442)
||+||.|+.+|+.||+.|.+|+|++||+||||..||++.+.+++++|||+++|||.+...+.|.+||+.||.|+.||||+
T Consensus 186 vK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIck 265 (484)
T KOG1855|consen 186 VKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICK 265 (484)
T ss_pred HHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C---CCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEeecCCCcccccCCCCCCCCCCchhh
Q 046325 266 P---PESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLLRCSPKSVLKTKKSEFEGILDDEE 342 (442)
Q Consensus 266 ~---~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~~~~~~k~~~~~~r~~~~g~~~~~~ 342 (442)
| ........+.++.++.+-||||||+..+.|.||.+.||.+..|+.||+|+|+..+.+|...++..+.+.+...+++
T Consensus 266 Pgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkvkLl~k~a~K~~~~~~~R~~~g~~~d~E 345 (484)
T KOG1855|consen 266 PGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWRMGLKVKLLGKKAPKIQIAAPVRSRGGSFSDDE 345 (484)
T ss_pred CCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchhhhhhccCcccccccccccccccccCcc
Confidence 9 4445555677788889999999999999999999999999999999999999999998776554333344333332
Q ss_pred h---ccccCC-----CCCCC--ccc---cccccCcccCCCCCCCCCCCCCCCCCCCCCCC---------------CCCCC
Q 046325 343 A---DASEDS-----SHPNN--QES---VAENNNVEENSGGSKKGWARGRGKGRGRAQSH---------------NSRSL 394 (442)
Q Consensus 343 ~---~~~~~~-----~~~~~--~~~---~~~~~~~~~~~~Ggr~GrgRGRGrGRGrg~~~---------------~g~G~ 394 (442)
. ++.+.. ....+ .|. ..+++.++.+..++..|+-+||++||||++++ ++..|
T Consensus 346 ~~~~~st~~e~np~~~q~~~~~~H~~~~~l~~d~Gn~~~~~~~~g~~~Gr~kG~gR~~p~an~~~~n~~ss~~~Gn~~~~ 425 (484)
T KOG1855|consen 346 TVPDDSTKLERNPSDPQPSYPRLHANENQLDQDRGNQNQEGGPWGFFKGRRKGRGRSTPSANTAQANGHSSNGGGNGMVH 425 (484)
T ss_pred cCcccccccccCCCCcCCCccccccccccCCCCCCCcccccCCCCcccccccccCCCCcchhhhhccCccCCCCCCcccc
Confidence 2 111111 01111 111 11234455566677766556666666666221 22235
Q ss_pred CCCCCCCCCCc------cccccccCCCCCCCCCCcccccccccCc
Q 046325 395 LTPPPQSSNAS------QNEASAKQTFKGPRMPDVTQIMALHFLK 433 (442)
Q Consensus 395 g~p~~~~~~~~------~~~~~~~~~~~gpRmPdgtrgf~~gRgk 433 (442)
|.+++++.++. ..+...+..+||||||||||||+||||+
T Consensus 426 g~ss~~s~ps~sP~~~~k~~~~~~~q~~gPrmPdgtrGfsmGrg~ 470 (484)
T KOG1855|consen 426 GISSLSSHPSYSPEVNPKRPRRASNQSPGPRMPDGTRGFSMGRGD 470 (484)
T ss_pred cccccccCCCCCcccccccccccccCCCCCCCCCCcCCccccccc
Confidence 65555543222 1123335568999999999999999995
No 2
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.95 E-value=1.2e-28 Score=197.42 Aligned_cols=74 Identities=27% Similarity=0.455 Sum_probs=71.9
Q ss_pred HHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 142 ~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
+.|++||||||||+||++|.||+++| |.+|||||++||+|+|||+||.|+++|++||+.|+.|+|+++|++||.
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--d~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVRp 75 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--DSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVRP 75 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--ccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccCc
Confidence 68999999999999999999999999 789999999999999999999999999999999999999999999984
No 3
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.95 E-value=9.4e-29 Score=199.11 Aligned_cols=75 Identities=35% Similarity=0.507 Sum_probs=72.4
Q ss_pred HHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 141 RAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 141 ~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
+++|++||||||||+||++|.||+++| |++|||||++|++|+|||+|+.|+++|++||+.|+.|+|++||++||.
T Consensus 1 ~e~i~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVRp 75 (75)
T cd08035 1 RECLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVRP 75 (75)
T ss_pred ChHHHhhHHhhcCHhhcccCHHHHHhh--CcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccCc
Confidence 378999999999999999999999999 789999999999999999999999999999999999999999999984
No 4
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.95 E-value=1.6e-28 Score=201.62 Aligned_cols=80 Identities=33% Similarity=0.596 Sum_probs=77.9
Q ss_pred HHHHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 138 ~~~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
.++.++|++||||||||+||++|.||+++|.++++|||||++|++|+|||+|+.|.+.|++||+.|+.|+|++||++|||
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 47899999999999999999999999999998899999999999999999999999999999999999999999999997
No 5
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.94 E-value=3e-28 Score=197.96 Aligned_cols=76 Identities=57% Similarity=0.843 Sum_probs=74.7
Q ss_pred HHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 142 ~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
++|++||||||||+||++|.||+++|.+|++|||||++|++|+|||+|+.|.+.|++||+.|+.|+|++||++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999997
No 6
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=99.94 E-value=2.3e-26 Score=238.83 Aligned_cols=170 Identities=25% Similarity=0.425 Sum_probs=144.3
Q ss_pred CCCCCCCCCHHHHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEE
Q 046325 129 SNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIV 208 (442)
Q Consensus 129 ~~~~~~~~~~~~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeV 208 (442)
..++..+++.++++.|++|||||||.+||..|.||+.+| |+|.||||.+||.|..|++|++|+++|+++|+.|..|+|
T Consensus 85 g~~~~~Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQM--DSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~Vqv 162 (684)
T KOG2591|consen 85 GEPPSPPLSRDLKQLLKKQLEYYFSRENLSSDRYLISQM--DSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQV 162 (684)
T ss_pred CCCCCCccchhHHHHHHHHHHHhhccccccchhhhhhhc--ccccccchhhhccchhhhhhccchHHHHHHHhcCCCcee
Confidence 355666778899999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ecCCccccccCCCCchhhhccccceEEcccCCCCCCHHHHHHHHhc--CCCeEEEEEeCCCCCCCCCcccccccCcccEE
Q 046325 209 SNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGV--VGSVKTIRICHPPESNSSRAKSDFFVSNKLHA 286 (442)
Q Consensus 209 seDg~kVRRk~Pl~e~~~~~~~~rTVyV~nLp~d~T~e~LkelFs~--~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~A 286 (442)
+++|.+||... +.|+|+++.||+.+.+|+|+.||+. |-++.++.+.. ...|
T Consensus 163 DekgekVrp~~----------kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~-----------------N~nW 215 (684)
T KOG2591|consen 163 DEKGEKVRPNH----------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH-----------------NDNW 215 (684)
T ss_pred ccCccccccCc----------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee-----------------cCce
Confidence 99999999877 5789999999999999999999987 44455544432 2468
Q ss_pred EEEeCCHHHHHHHHHHhcCCcC--CCCceEEEE--eecCCCcccc
Q 046325 287 LVEYESTDIAEKAVEKLNDERN--WRKGLRVRV--LLRCSPKSVL 327 (442)
Q Consensus 287 FVEFes~edA~kAv~~Ln~~~~--~~~glrV~l--~~~~~~k~~~ 327 (442)
||+|++.+||++|+++|..+.. .++.|-.+| +.+-.+|.++
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpImARIKaintf~pkngy 260 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIMARIKAINTFFPKNGY 260 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhhhhcccCCCCC
Confidence 9999999999999999998654 445554444 4444555544
No 7
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.93 E-value=3.2e-27 Score=193.46 Aligned_cols=80 Identities=51% Similarity=0.785 Sum_probs=77.1
Q ss_pred HHHHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 138 ~~~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
+++.++|++||||||||+||++|.||+++|.++ +|||||++|++|+|||+|+.|.+.|++||+.|+.|+|++|+++|||
T Consensus 1 ~~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR 79 (80)
T smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRR 79 (80)
T ss_pred ChHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCc
Confidence 478999999999999999999999999999887 9999999999999999999999999999999999999999999998
Q ss_pred c
Q 046325 218 K 218 (442)
Q Consensus 218 k 218 (442)
.
T Consensus 80 ~ 80 (80)
T smart00715 80 R 80 (80)
T ss_pred C
Confidence 4
No 8
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=4.2e-27 Score=190.89 Aligned_cols=75 Identities=37% Similarity=0.544 Sum_probs=72.7
Q ss_pred HHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 142 ~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
++|++||||||||+||++|.||+++|.++++|||||++|++|+|||+|+.+ +.|++||+.|+.|+|++||++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 689999999999999999999999999999999999999999999999975 999999999999999999999997
No 9
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.93 E-value=6.5e-27 Score=192.25 Aligned_cols=79 Identities=39% Similarity=0.704 Sum_probs=76.2
Q ss_pred HHHHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCC--ceEEecCCccc
Q 046325 138 DDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSS--KLIVSNDGKKV 215 (442)
Q Consensus 138 ~~~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~--~LeVseDg~kV 215 (442)
+++..+|++||||||||+||++|.||+++|.++ +|||||++|++|+|||+|+.|.+.|++||+.|+ .|+|++||++|
T Consensus 2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~V 80 (82)
T cd08028 2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKI 80 (82)
T ss_pred hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCcc
Confidence 579999999999999999999999999999765 999999999999999999999999999999999 99999999999
Q ss_pred cc
Q 046325 216 RR 217 (442)
Q Consensus 216 RR 217 (442)
||
T Consensus 81 RR 82 (82)
T cd08028 81 RR 82 (82)
T ss_pred CC
Confidence 97
No 10
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=4.8e-27 Score=189.98 Aligned_cols=74 Identities=34% Similarity=0.546 Sum_probs=71.7
Q ss_pred HHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 142 ~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
++|++||||||||+||++|.||+++| +++|||||++|++|+|||+|+.|.+.|++||+.|+.|+|++||++||+
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m--~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~ 75 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQM--DSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP 75 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHh--CCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence 68999999999999999999999999 678999999999999999999999999999999999999999999984
No 11
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=1e-26 Score=193.84 Aligned_cols=77 Identities=43% Similarity=0.703 Sum_probs=73.7
Q ss_pred HHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccC------------hHHHHHHhhcCCceEE
Q 046325 141 RAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGN------------NHLLAQALRSSSKLIV 208 (442)
Q Consensus 141 ~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d------------~~~I~~AL~~S~~LeV 208 (442)
+++|++||||||||+||++|.||+++|.+|++|||||++|++|+|||+|+.+ ++.|++||+.|+.|+|
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 5899999999999999999999999999999999999999999999999853 6899999999999999
Q ss_pred ecCCccccc
Q 046325 209 SNDGKKVRR 217 (442)
Q Consensus 209 seDg~kVRR 217 (442)
++||++|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 999999998
No 12
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=2.8e-26 Score=184.19 Aligned_cols=72 Identities=31% Similarity=0.532 Sum_probs=68.8
Q ss_pred HHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 142 ~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
+.|++||||||||+||++|.||+++| |++|||||++|++|+|||+|+.|.++|++||+.|+.|||+++ +|||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~m--d~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~--~~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKM--DEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM--KIRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHh--ccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc--hhcC
Confidence 68999999999999999999999999 789999999999999999999999999999999999999977 6765
No 13
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=2.9e-26 Score=184.06 Aligned_cols=72 Identities=32% Similarity=0.579 Sum_probs=68.6
Q ss_pred HHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 142 ~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
++|++||||||||+||++|.||+++| |++|||||++|++|+|||+|+.|.++|++||+.|+.|+|++| +|||
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~--~~r~ 73 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKM--DLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQ--KIRR 73 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHh--CCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCC--cccC
Confidence 78999999999999999999999999 789999999999999999999999999999999999999977 5664
No 14
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=8.2e-26 Score=181.85 Aligned_cols=73 Identities=33% Similarity=0.585 Sum_probs=69.1
Q ss_pred HHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 141 RAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 141 ~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
+++|++||||||||+||++|.||+++| |++|||||++|++|+|||+|+.|.+.|++||+.|+.|+|+++ +||+
T Consensus 1 ~~~i~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e~--kvR~ 73 (73)
T cd08034 1 KEYIKKQIEYYFSVDNLEKDFFLRRKM--DPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVDE--KVRC 73 (73)
T ss_pred ChHHHhhHHhhcCHhhhccCHHHHHHc--CCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEecC--eecC
Confidence 368999999999999999999999999 789999999999999999999999999999999999999984 6775
No 15
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=5.6e-25 Score=178.25 Aligned_cols=74 Identities=47% Similarity=0.693 Sum_probs=72.1
Q ss_pred HHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 142 AKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 142 ~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
++|++||||||||+||++|.||+++| +++|||||++|++|+||++|+.|.+.|++||+.|..|+|++++.+|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 68999999999999999999999999 889999999999999999999999999999999999999999999987
No 16
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.86 E-value=6.3e-23 Score=159.99 Aligned_cols=60 Identities=40% Similarity=0.661 Sum_probs=55.3
Q ss_pred HHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhc-cChHHHHHHhhcC
Q 046325 144 IIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLV-GNNHLLAQALRSS 203 (442)
Q Consensus 144 I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt-~d~~~I~~AL~~S 203 (442)
|++||||||||+||++|+||+++|.+++||||||++|++|+|||+|+ .|++.|++||++|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 78999999999999999999999998889999999999999999999 8999999999987
No 17
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=99.85 E-value=1.2e-21 Score=180.05 Aligned_cols=154 Identities=23% Similarity=0.379 Sum_probs=130.7
Q ss_pred CHHHHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCC--ceEEecCCcc
Q 046325 137 TDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSS--KLIVSNDGKK 214 (442)
Q Consensus 137 ~~~~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~--~LeVseDg~k 214 (442)
.+++.++|+.||||||.|.||++|.||+.+|.+..+|||||.++..|+|+..|++|...|++||+.|. ++++++|..+
T Consensus 10 ~a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k 89 (205)
T KOG4213|consen 10 MAALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTK 89 (205)
T ss_pred hhHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhh
Confidence 46788999999999999999999999999998888999999999999999999999999999999886 6899999999
Q ss_pred ccccC--CCCch---hhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEE
Q 046325 215 VRRKH--PFTDK---EREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVE 289 (442)
Q Consensus 215 VRRk~--Pl~e~---~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVE 289 (442)
+||.. |||+. .......|+||.. +.+...++|..+-+ |.+.+|.|.+..... ..++|..||.
T Consensus 90 ~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~---------~~fkGsvkv~ 156 (205)
T KOG4213|consen 90 IRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKA---------HPFKGSVKVT 156 (205)
T ss_pred hhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCC---------CCCCCceEEE
Confidence 99985 77763 3456778999999 66666777777766 899999987644321 1357899999
Q ss_pred eCCHHHHHHHHHHh
Q 046325 290 YESTDIAEKAVEKL 303 (442)
Q Consensus 290 Fes~edA~kAv~~L 303 (442)
|.+.+.|...++.-
T Consensus 157 f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 157 FQTKEQAFANDDTH 170 (205)
T ss_pred eecHHHHHhhhhhh
Confidence 99999998877643
No 18
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=4.9e-15 Score=134.01 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=72.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|++||.|..|+|+.+..+.. .+|||||+|++.++|++||+.||+..+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~----------~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR----------SRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC----------cceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 467899999999999999999999999999999988765432 3689999999999999999999999998
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.|+|.++..+
T Consensus 103 Gr~l~V~~a~~~ 114 (144)
T PLN03134 103 GRHIRVNPANDR 114 (144)
T ss_pred CEEEEEEeCCcC
Confidence 888888887643
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=1.4e-14 Score=148.28 Aligned_cols=115 Identities=22% Similarity=0.310 Sum_probs=82.8
Q ss_pred ChHHHHHHhhcCCceEEecCCccccccCCCCchhhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 046325 192 NNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNS 271 (442)
Q Consensus 192 d~~~I~~AL~~S~~LeVseDg~kVRRk~Pl~e~~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~ 271 (442)
+.+.+..||..-.-+++.....+|....| ........+|||.|||.++|+++|+++|++||.|+.|+|+++..+..
T Consensus 158 ~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p----~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~ 233 (346)
T TIGR01659 158 SEADSQRAIKNLNGITVRNKRLKVSYARP----GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGT 233 (346)
T ss_pred cHHHHHHHHHHcCCCccCCceeeeecccc----cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCc
Confidence 56677777754333333322222221111 11233567899999999999999999999999999999988655432
Q ss_pred CCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC--CceEEEEeec
Q 046325 272 SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR--KGLRVRVLLR 320 (442)
Q Consensus 272 sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~--~glrV~l~~~ 320 (442)
.|+||||+|++.++|++||+.||+..+.+ ..|+|+++..
T Consensus 234 ----------~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 234 ----------PRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred ----------cceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 25899999999999999999999987765 4566666654
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.47 E-value=8.7e-13 Score=142.65 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=70.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcC--CCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVV--GSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~--G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
..++|||+||+.++++++|+++|+.| |.|+.|++++ +||||+|++.++|++|++.||+..
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r------------------gfAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR------------------DYAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec------------------CeEEEEeCCHHHHHHHHHHhCCCE
Confidence 35789999999999999999999999 9999998743 599999999999999999999999
Q ss_pred CCCCceEEEEeecCCCc
Q 046325 308 NWRKGLRVRVLLRCSPK 324 (442)
Q Consensus 308 ~~~~glrV~l~~~~~~k 324 (442)
++++.|+|.++.+...+
T Consensus 294 i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 294 LEGSEIEVTLAKPVDKK 310 (578)
T ss_pred ECCEEEEEEEccCCCcc
Confidence 99999999999876554
No 21
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3e-14 Score=144.87 Aligned_cols=148 Identities=21% Similarity=0.276 Sum_probs=125.4
Q ss_pred HHhcceeecc-----CCCCChhHHHHhhhcCC--CCCceecccccchhHHHhhccChHHHHHHhhcC---CceEEecCCc
Q 046325 144 IIKQVEYQFS-----DMSLLANETLSKHVNKD--PEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSS---SKLIVSNDGK 213 (442)
Q Consensus 144 I~kQvEyYFS-----d~NL~~D~fL~~~m~~d--~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S---~~LeVseDg~ 213 (442)
+..|+||||| |.|+.+|+||+....++ .++||||.++++|++|+.++..++.+..|++.| .+++++.+|.
T Consensus 75 ~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~gs~~~~v~~a~rks~~~rv~e~Sssgs 154 (438)
T COG5193 75 TLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALRKSLDARVLEVSSSGS 154 (438)
T ss_pred cccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccccccCCchhhhhhhhhcCcccceeeeccccc
Confidence 8899999999 99999999999887664 589999999999999999999999999999999 7899999999
Q ss_pred cccccCCCCchhhh--ccccceEEcccCCCCCCH--------HHHHHHHhc--CCCeEEEEEeCCCCCCCCCcccccccC
Q 046325 214 KVRRKHPFTDKERE--ELQSCTVVAENLPEDHSH--------QNLEKIFGV--VGSVKTIRICHPPESNSSRAKSDFFVS 281 (442)
Q Consensus 214 kVRRk~Pl~e~~~~--~~~~rTVyV~nLp~d~T~--------e~LkelFs~--~G~V~~Vri~r~~~~~~sr~Kg~~~~~ 281 (442)
.++|..++.....+ ....|.+|+.+|+...+. ++++..|.. .+.+..|+++++.....
T Consensus 155 n~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn---------- 224 (438)
T COG5193 155 NKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKN---------- 224 (438)
T ss_pred cccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhcc----------
Confidence 99998876543332 455789999999876544 499999998 78899999988653211
Q ss_pred cccEEEEEeCCHHHHHHHHH
Q 046325 282 NKLHALVEYESTDIAEKAVE 301 (442)
Q Consensus 282 ~KG~AFVEFes~edA~kAv~ 301 (442)
+.|..||+|...+.|+++..
T Consensus 225 ~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 225 FRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred ccCcccccccChHHHHHHhc
Confidence 25788999999999998884
No 22
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=7.4e-13 Score=123.25 Aligned_cols=77 Identities=26% Similarity=0.303 Sum_probs=65.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
.+++|||+|||.++.+.+|++||.+||.|..|.|..+.. .-.||||||++.-||+.||..-++..+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-------------~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-------------PPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-------------CCCeeEEEecCccchhhhhhcccccccC
Confidence 578999999999999999999999999999999854322 1359999999999999999988888887
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
+.-|+|.+..
T Consensus 72 g~rLRVEfpr 81 (241)
T KOG0105|consen 72 GCRLRVEFPR 81 (241)
T ss_pred cceEEEEecc
Confidence 7667777643
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.39 E-value=1.3e-12 Score=131.68 Aligned_cols=81 Identities=23% Similarity=0.238 Sum_probs=73.0
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
.++|||+|||.++++++|+++|+.||.|.+|+|+++..++. .||||||+|++.++|.+|+..||+..+++
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~----------skG~aFV~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQ----------CKGYGFVSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCC----------ccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45799999999999999999999999999999998765443 36899999999999999999999999999
Q ss_pred CceEEEEeecC
Q 046325 311 KGLRVRVLLRC 321 (442)
Q Consensus 311 ~glrV~l~~~~ 321 (442)
+.|+|.+...+
T Consensus 339 r~i~V~~~~~~ 349 (352)
T TIGR01661 339 RVLQVSFKTNK 349 (352)
T ss_pred eEEEEEEccCC
Confidence 99999987654
No 24
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=1.6e-12 Score=100.24 Aligned_cols=70 Identities=33% Similarity=0.517 Sum_probs=60.6
Q ss_pred EEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCce
Q 046325 234 VVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGL 313 (442)
Q Consensus 234 VyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~gl 313 (442)
|||+|||.++|+++|+++|+.||.|..+.+... .. . ..+++|||+|++.++|++|++.|++..+.+..|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~--~--------~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SS--G--------KSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TT--S--------SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-cc--c--------cccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 799999999999999999999999999998874 11 1 136899999999999999999999988776654
Q ss_pred E
Q 046325 314 R 314 (442)
Q Consensus 314 r 314 (442)
+
T Consensus 70 r 70 (70)
T PF00076_consen 70 R 70 (70)
T ss_dssp E
T ss_pred C
Confidence 3
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.35 E-value=2.8e-12 Score=129.34 Aligned_cols=81 Identities=20% Similarity=0.339 Sum_probs=72.4
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
..+|||+|||.++++++|+++|+.||+|..|+|+++..++. .+|||||+|.+.++|++||+.||+..+.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~----------s~g~afV~f~~~~~A~~Ai~~l~g~~l~g 72 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQ----------SLGYGFVNYVRPEDAEKAVNSLNGLRLQN 72 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCc----------cceEEEEEECcHHHHHHHHhhcccEEECC
Confidence 57899999999999999999999999999999998765432 35899999999999999999999999998
Q ss_pred CceEEEEeecC
Q 046325 311 KGLRVRVLLRC 321 (442)
Q Consensus 311 ~glrV~l~~~~ 321 (442)
+.|+|.++.+.
T Consensus 73 ~~i~v~~a~~~ 83 (352)
T TIGR01661 73 KTIKVSYARPS 83 (352)
T ss_pred eeEEEEeeccc
Confidence 88999877543
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2.5e-11 Score=112.14 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=69.1
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
.+.|||+||+.+++..+|+.+|..||.|..|.|.+.. -|||||||++..||+.|+..||+..+.+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP---------------PGfAFVEFed~RDA~DAvr~LDG~~~cG 74 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP---------------PGFAFVEFEDPRDAEDAVRYLDGKDICG 74 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC---------------CCceEEeccCcccHHHHHhhcCCccccC
Confidence 6789999999999999999999999999999997621 3799999999999999999999999998
Q ss_pred CceEEEEeecCC
Q 046325 311 KGLRVRVLLRCS 322 (442)
Q Consensus 311 ~glrV~l~~~~~ 322 (442)
.-|+|++..-..
T Consensus 75 ~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 75 SRIRVELSTGRP 86 (195)
T ss_pred ceEEEEeecCCc
Confidence 888888866444
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.33 E-value=4.4e-12 Score=130.00 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=72.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++|+++|+++|+.||.|+.|+|+++..+.. .+|||||+|.++++|++||+.||+..+.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~----------srGyaFVeF~~~e~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGY----------SFGYAFVDFGSEADSQRAIKNLNGITVR 175 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc----------cCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence 578999999999999999999999999999999988765433 2589999999999999999999999999
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
++.|+|..+..
T Consensus 176 gr~i~V~~a~p 186 (346)
T TIGR01659 176 NKRLKVSYARP 186 (346)
T ss_pred Cceeeeecccc
Confidence 99999887653
No 28
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.4e-12 Score=111.43 Aligned_cols=82 Identities=23% Similarity=0.250 Sum_probs=73.0
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
..+++||||+||..-+++|+|.+||+.+|+|+.|-|--+..+. ...|||||||-+.++|+.|++.+|+..
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kk----------tpCGFCFVeyy~~~dA~~Alryisgtr 102 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKK----------TPCGFCFVEYYSRDDAEDALRYISGTR 102 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCc----------CccceEEEEEecchhHHHHHHHhccCc
Confidence 3568999999999999999999999999999999986654332 347999999999999999999999999
Q ss_pred CCCCceEEEEee
Q 046325 308 NWRKGLRVRVLL 319 (442)
Q Consensus 308 ~~~~glrV~l~~ 319 (442)
+..+.|+|.+..
T Consensus 103 Lddr~ir~D~D~ 114 (153)
T KOG0121|consen 103 LDDRPIRIDWDA 114 (153)
T ss_pred ccccceeeeccc
Confidence 999999998865
No 29
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.26 E-value=2e-11 Score=119.85 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=69.0
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||..+|+++|+++|+.||.|..|+|+++.. .++||||+|++.++|+.|| .||+..+.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-------------~~GfAFVtF~d~eaAe~Al-lLnG~~l~ 68 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-------------RSQIAYVTFKDPQGAETAL-LLSGATIV 68 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-------------CCCEEEEEeCcHHHHHHHH-HhcCCeeC
Confidence 368999999999999999999999999999999987643 1479999999999999999 59999999
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
++.|+|..+..
T Consensus 69 gr~V~Vt~a~~ 79 (260)
T PLN03120 69 DQSVTITPAED 79 (260)
T ss_pred CceEEEEeccC
Confidence 99899888653
No 30
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.4e-11 Score=109.84 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=80.7
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
..+...+|||.++.+.+|+++|.+.|..||+|++|.|.-+..++.. ||||+|||++.++|++|+..||+.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~----------KGYaLvEYet~keAq~A~~~~Ng~ 137 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYV----------KGYALVEYETLKEAQAAIDALNGA 137 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccc----------cceeeeehHhHHHHHHHHHhccch
Confidence 3456789999999999999999999999999999999887765432 789999999999999999999999
Q ss_pred cCCCCceEEEEeecCCCcccc
Q 046325 307 RNWRKGLRVRVLLRCSPKSVL 327 (442)
Q Consensus 307 ~~~~~glrV~l~~~~~~k~~~ 327 (442)
.+.++.+.|....-..+..+.
T Consensus 138 ~ll~q~v~VDw~Fv~gp~~g~ 158 (170)
T KOG0130|consen 138 ELLGQNVSVDWCFVKGPERGK 158 (170)
T ss_pred hhhCCceeEEEEEecCCccCc
Confidence 999999999998877775444
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=1.2e-10 Score=126.74 Aligned_cols=162 Identities=15% Similarity=0.182 Sum_probs=107.6
Q ss_pred eeeccCCCCC-hhHHHHhhhcCCCCCce-ecccccch--hHHHhhc----cChHHHHHHhhcCCceEEecCCccccccCC
Q 046325 149 EYQFSDMSLL-ANETLSKHVNKDPEGFV-PLSVIGSM--KKIKSLV----GNNHLLAQALRSSSKLIVSNDGKKVRRKHP 220 (442)
Q Consensus 149 EyYFSd~NL~-~D~fL~~~m~~d~eG~V-pi~~i~sF--~kmK~Lt----~d~~~I~~AL~~S~~LeVseDg~kVRRk~P 220 (442)
..|.++.+.. .+..|+..... -|-| .|.++..- .+-+-+. .+.+....||..-.-..+.....+|.+...
T Consensus 109 rLfVGnLp~~~tEe~Lr~lF~~--fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 109 RVYVGSISFELREDTIRRAFDP--FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred EEEEcCCCCCCCHHHHHHHHHc--cCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 4588877764 45567777633 2333 44444332 1222222 146777777764444444322223333221
Q ss_pred CCc------hh-hhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCH
Q 046325 221 FTD------KE-REELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYEST 293 (442)
Q Consensus 221 l~e------~~-~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~ 293 (442)
++. .. .+....++|||+|||.++++++|+++|+.||.|.+++|.++..++. .||||||+|++.
T Consensus 187 ~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgk----------sKGfGFVeFe~~ 256 (612)
T TIGR01645 187 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG----------HKGYGFIEYNNL 256 (612)
T ss_pred ccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC----------cCCeEEEEECCH
Confidence 111 00 1112357999999999999999999999999999999988654332 368999999999
Q ss_pred HHHHHHHHHhcCCcCCCCceEEEEeecCC
Q 046325 294 DIAEKAVEKLNDERNWRKGLRVRVLLRCS 322 (442)
Q Consensus 294 edA~kAv~~Ln~~~~~~~glrV~l~~~~~ 322 (442)
++|.+||+.||+..+.++-|+|..+.+.+
T Consensus 257 e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999999999998776543
No 32
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.6e-11 Score=116.97 Aligned_cols=82 Identities=30% Similarity=0.346 Sum_probs=74.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
+.+||-|.||++++++++|++||..||.|.+|.|.+++.++-+ ||||||.|++.++|.+||+.||+.-+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~----------kGFAFVtF~sRddA~rAI~~LnG~gyd 257 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLS----------KGFAFVTFESRDDAARAIADLNGYGYD 257 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcc----------cceEEEEEecHHHHHHHHHHccCcccc
Confidence 5789999999999999999999999999999999998876544 689999999999999999999998887
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
.-.|+|....+.
T Consensus 258 ~LILrvEwskP~ 269 (270)
T KOG0122|consen 258 NLILRVEWSKPS 269 (270)
T ss_pred eEEEEEEecCCC
Confidence 778888887653
No 33
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.17 E-value=7.6e-11 Score=92.05 Aligned_cols=67 Identities=27% Similarity=0.448 Sum_probs=56.0
Q ss_pred EEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCC
Q 046325 234 VVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRK 311 (442)
Q Consensus 234 VyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~ 311 (442)
|||+|||.++++++|.++|+.||.|..|++.+... + ..+++|||+|.+.++|++|+..+++..+.++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~----------~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-G----------QSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-S----------SEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-c----------ccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 79999999999999999999999999999987543 2 1368999999999999999998886665544
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.16 E-value=8.2e-11 Score=126.83 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=69.4
Q ss_pred eEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCc
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKG 312 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~g 312 (442)
+|||+|||.++|+++|.++|+.||.|.+|+||++..+.. .+|||||+|.+.++|++|++.||+..++++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~----------s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~ 71 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRR----------SLGYGYVNFQNPADAERALETMNFKRLGGKP 71 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC----------cceEEEEEECCHHHHHHHHHHhCCCEECCee
Confidence 799999999999999999999999999999999765432 2589999999999999999999999899888
Q ss_pred eEEEEee
Q 046325 313 LRVRVLL 319 (442)
Q Consensus 313 lrV~l~~ 319 (442)
|+|....
T Consensus 72 i~i~~s~ 78 (562)
T TIGR01628 72 IRIMWSQ 78 (562)
T ss_pred EEeeccc
Confidence 8887654
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.2e-10 Score=120.06 Aligned_cols=169 Identities=21% Similarity=0.202 Sum_probs=115.3
Q ss_pred CHHHHHHHHhcceee-----------ccCCCC-------C----hhHHHHhhhcCCCCCceecccccch-hHHHhhcc--
Q 046325 137 TDDLRAKIIKQVEYQ-----------FSDMSL-------L----ANETLSKHVNKDPEGFVPLSVIGSM-KKIKSLVG-- 191 (442)
Q Consensus 137 ~~~~~~~I~kQvEyY-----------FSd~NL-------~----~D~fL~~~m~~d~eG~Vpi~~i~sF-~kmK~Lt~-- 191 (442)
+.+..+..+++|.=| .|-+|- + +|++ ++.|++=.+|.|.+.++.+- +++|+-..
T Consensus 134 ~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeI-lee~~kVteGVvdVivy~~p~dk~KNRGFaF 212 (506)
T KOG0117|consen 134 TKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEI-LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAF 212 (506)
T ss_pred cHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHH-HHHHHhhCCCeeEEEEecCccccccccceEE
Confidence 556666666666544 454442 2 3444 44555557899999999886 45555332
Q ss_pred ----ChHHHHHHhh--cCCceEEecCCccccccCCCCchhhhc-cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEe
Q 046325 192 ----NNHLLAQALR--SSSKLIVSNDGKKVRRKHPFTDKEREE-LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRIC 264 (442)
Q Consensus 192 ----d~~~I~~AL~--~S~~LeVseDg~kVRRk~Pl~e~~~~~-~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~ 264 (442)
+....+.|=+ .+..+.|-...-.|.=.+|-.+-+.+. .+-+.|||+||+.++|+|.|+++|++||.|.+|..+
T Consensus 213 veYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~ 292 (506)
T KOG0117|consen 213 VEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP 292 (506)
T ss_pred EEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc
Confidence 2222222222 233445543333343333322211111 234789999999999999999999999999999876
Q ss_pred CCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEeecCCCc
Q 046325 265 HPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLLRCSPK 324 (442)
Q Consensus 265 r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~~~~~~k 324 (442)
+ .||||.|.+.++|.+|++.||+..+.+..|.|.|+++...+
T Consensus 293 r------------------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 293 R------------------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred c------------------ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 5 39999999999999999999999999999999999976544
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=2.5e-10 Score=121.01 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=71.4
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
.++|||+|||..+++++|+++|+.||.|..+.|+++..++. .+|||||+|.+.++|.+||..||+..+++
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~----------~~g~afv~f~~~~~a~~A~~~l~g~~~~~ 364 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGL----------SKGYAFCEYKDPSVTDVAIAALNGKDTGD 364 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC----------cCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 57899999999999999999999999999999987654332 36899999999999999999999999999
Q ss_pred CceEEEEeec
Q 046325 311 KGLRVRVLLR 320 (442)
Q Consensus 311 ~glrV~l~~~ 320 (442)
..|.|..+..
T Consensus 365 ~~l~v~~a~~ 374 (509)
T TIGR01642 365 NKLHVQRACV 374 (509)
T ss_pred eEEEEEECcc
Confidence 8899988753
No 37
>smart00362 RRM_2 RNA recognition motif.
Probab=99.14 E-value=2.3e-10 Score=86.46 Aligned_cols=71 Identities=35% Similarity=0.547 Sum_probs=60.6
Q ss_pred eEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCc
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKG 312 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~g 312 (442)
+|||.|||..++.++|+++|..||.|..+.+.... . ..+++|||+|.+.++|++|+..|++..+.+..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~----------~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--G----------KSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--C----------CCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 68999999999999999999999999999987653 1 12579999999999999999999987776554
Q ss_pred eEE
Q 046325 313 LRV 315 (442)
Q Consensus 313 lrV 315 (442)
++|
T Consensus 69 i~v 71 (72)
T smart00362 69 LRV 71 (72)
T ss_pred Eee
Confidence 544
No 38
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.13 E-value=2.7e-10 Score=122.87 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=73.5
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+||+.++++++|+++|+.||.|..|+|..+. ++. .+|||||+|.+.++|.+|+..||+..+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~----------~~g~gfV~f~~~~~A~~A~~~~~g~~~ 351 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGV----------SRGFGFVCFSNPEEANRAVTEMHGRML 351 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCC----------cCCeEEEEeCCHHHHHHHHHHhcCCee
Confidence 346789999999999999999999999999999998763 221 368999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|.|.++.++.
T Consensus 352 ~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 352 GGKPLYVALAQRKE 365 (562)
T ss_pred CCceeEEEeccCcH
Confidence 99999999987654
No 39
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2.3e-10 Score=97.93 Aligned_cols=77 Identities=26% Similarity=0.297 Sum_probs=66.5
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
-.+.|||.|||.++|.+++-++|++||.|..|||-.... .+|.|||.|++..+|.+|++.|++....
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-------------TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-------------TRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC-------------cCceEEEEehHhhhHHHHHHHhcccccC
Confidence 368999999999999999999999999999999954322 3589999999999999999999998888
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
..-|.|-.-.
T Consensus 84 ~ryl~vlyyq 93 (124)
T KOG0114|consen 84 NRYLVVLYYQ 93 (124)
T ss_pred CceEEEEecC
Confidence 7666665543
No 40
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=2.3e-10 Score=113.10 Aligned_cols=85 Identities=24% Similarity=0.220 Sum_probs=76.5
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
.-+||||..|+.++++..|++.|+.||.|+.|+|+++..++.+ ||||||||+++-+...|++..++..+.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgks----------kGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKS----------KGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCc----------cceEEEEeccHHHHHHHHHhccCceec
Confidence 5699999999999999999999999999999999998766543 689999999999999999999999999
Q ss_pred CCceEEEEeecCCCc
Q 046325 310 RKGLRVRVLLRCSPK 324 (442)
Q Consensus 310 ~~glrV~l~~~~~~k 324 (442)
++-|-|.+..-+..|
T Consensus 170 grri~VDvERgRTvk 184 (335)
T KOG0113|consen 170 GRRILVDVERGRTVK 184 (335)
T ss_pred CcEEEEEeccccccc
Confidence 998999986655554
No 41
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.11 E-value=2.7e-10 Score=119.23 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=70.3
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
+...+||||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|| .|++..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~----------skg~afVeF~~~e~A~~Al-~l~g~~ 154 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRR----------SKGVAYVEFYDVESVIKAL-ALTGQM 154 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC----------cceEEEEEECCHHHHHHHH-HhCCCE
Confidence 44679999999999999999999999999999999988654432 3689999999999999999 599999
Q ss_pred CCCCceEEEEee
Q 046325 308 NWRKGLRVRVLL 319 (442)
Q Consensus 308 ~~~~glrV~l~~ 319 (442)
+.+..|.|....
T Consensus 155 ~~g~~i~v~~~~ 166 (457)
T TIGR01622 155 LLGRPIIVQSSQ 166 (457)
T ss_pred ECCeeeEEeecc
Confidence 888888887643
No 42
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.11 E-value=1.6e-10 Score=125.71 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=70.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||+++++++|+++|+.||.|..|+|+.+..++. ++|||||+|++.++|++|++.||+..+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgk----------skGfAFVeF~s~e~A~~Ai~~lnG~~i~ 175 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGK----------HKGFAFVEYEVPEAAQLALEQMNGQMLG 175 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCC----------cCCeEEEEeCcHHHHHHHHHhcCCeEEe
Confidence 468999999999999999999999999999999988765432 3689999999999999999999999999
Q ss_pred CCceEEEEe
Q 046325 310 RKGLRVRVL 318 (442)
Q Consensus 310 ~~glrV~l~ 318 (442)
++.|+|...
T Consensus 176 GR~IkV~rp 184 (612)
T TIGR01645 176 GRNIKVGRP 184 (612)
T ss_pred cceeeeccc
Confidence 888888753
No 43
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.08 E-value=3.6e-10 Score=118.36 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=71.8
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
.++|||+|||.++|+++|+++|+.||.|..|.|.++..++. .+|||||+|.+.++|.+|+..||+..+.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~----------~~g~afV~f~~~e~A~~A~~~l~g~~i~g 255 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGR----------SKGFGFIQFHDAEEAKEALEVMNGFELAG 255 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc----------cceEEEEEECCHHHHHHHHHhcCCcEECC
Confidence 68999999999999999999999999999999987654322 36899999999999999999999999998
Q ss_pred CceEEEEeec
Q 046325 311 KGLRVRVLLR 320 (442)
Q Consensus 311 ~glrV~l~~~ 320 (442)
+.|+|.++..
T Consensus 256 ~~i~v~~a~~ 265 (457)
T TIGR01622 256 RPIKVGYAQD 265 (457)
T ss_pred EEEEEEEccC
Confidence 8899998763
No 44
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.08 E-value=4.3e-10 Score=109.21 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=67.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
...||||.||+..+|+++|+++|+.||+|..|+|+++.+. ++||||+|+++++|+.|+ .||+..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et-------------~gfAfVtF~d~~aaetAl-lLnGa~l~ 69 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY-------------ACTAYVTFKDAYALETAV-LLSGATIV 69 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc-------------ceEEEEEECCHHHHHHHH-hcCCCeeC
Confidence 3579999999999999999999999999999999987431 469999999999999999 89999998
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
+..|.|....
T Consensus 70 d~~I~It~~~ 79 (243)
T PLN03121 70 DQRVCITRWG 79 (243)
T ss_pred CceEEEEeCc
Confidence 8877776654
No 45
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.06 E-value=5.7e-10 Score=103.72 Aligned_cols=79 Identities=34% Similarity=0.500 Sum_probs=71.4
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
.++|||+|||.++++++|.++|..||.|..|+|..+..+.. .+|||||+|.+.++|..|+..|++..+.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~----------~~g~~~v~f~~~~~~~~a~~~~~~~~~~~ 184 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGK----------SRGFAFVEFESEESAEKAIEELNGKELEG 184 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCc----------cCceEEEEecCHHHHHHHHHHcCCCeECC
Confidence 59999999999999999999999999999999988753322 36899999999999999999999999999
Q ss_pred CceEEEEee
Q 046325 311 KGLRVRVLL 319 (442)
Q Consensus 311 ~glrV~l~~ 319 (442)
+.|+|..+.
T Consensus 185 ~~~~v~~~~ 193 (306)
T COG0724 185 RPLRVQKAQ 193 (306)
T ss_pred ceeEeeccc
Confidence 999999865
No 46
>smart00360 RRM RNA recognition motif.
Probab=99.06 E-value=8e-10 Score=82.99 Aligned_cols=70 Identities=33% Similarity=0.532 Sum_probs=58.7
Q ss_pred cccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEE
Q 046325 236 AENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRV 315 (442)
Q Consensus 236 V~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV 315 (442)
|.|||..++.++|+++|..||.|..+.+....... ..+++|||+|.+.++|.+|++.|++..+.++.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~----------~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTG----------KSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCC----------CCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 67999999999999999999999999998754321 13579999999999999999999987776655554
No 47
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.05 E-value=8.2e-10 Score=119.76 Aligned_cols=68 Identities=25% Similarity=0.387 Sum_probs=60.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||.++++++|.++|++||.|..|+|+++ .++. ++|||||+|.+.++|++||+.||+..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~----------sRGfaFV~F~~~e~A~~Ai~~lng~~i 124 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQ----------NRGYAFVTFCGKEEAKEAVKLLNNYEI 124 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCC----------ccceEEEEeCCHHHHHHHHHHcCCCee
Confidence 4689999999999999999999999999999999887 3332 368999999999999999999998665
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.04 E-value=5.3e-10 Score=118.98 Aligned_cols=74 Identities=23% Similarity=0.165 Sum_probs=66.0
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHh--cCCcC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL--NDERN 308 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~L--n~~~~ 308 (442)
+++|||+|||.++++++|+++|+.||.|.+|.|++. |+||||||++.++|++||+.| ++..+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~----------------k~~afVef~~~e~A~~Ai~~~~~~~~~l 65 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG----------------KRQALVEFEDEESAKACVNFATSVPIYI 65 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC----------------CCEEEEEeCchHHHHHHHHHhhcCCceE
Confidence 689999999999999999999999999999998752 479999999999999999875 66778
Q ss_pred CCCceEEEEeec
Q 046325 309 WRKGLRVRVLLR 320 (442)
Q Consensus 309 ~~~glrV~l~~~ 320 (442)
+++.|+|.++..
T Consensus 66 ~g~~l~v~~s~~ 77 (481)
T TIGR01649 66 RGQPAFFNYSTS 77 (481)
T ss_pred cCeEEEEEecCC
Confidence 888899988754
No 49
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.04 E-value=5.5e-10 Score=105.82 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=73.0
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
-.+|.|.||.+-++.++|..+|++||.|-.|-|+++..+..+ +|||||-|.+..||++|+++|++..+++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~s----------RgFaFVrf~~k~daedA~damDG~~ldg 82 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQS----------RGFAFVRFHDKRDAEDALDAMDGAVLDG 82 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccc----------cceeEEEeeecchHHHHHHhhcceeecc
Confidence 468999999999999999999999999999999988765443 5899999999999999999999999999
Q ss_pred CceEEEEeec
Q 046325 311 KGLRVRVLLR 320 (442)
Q Consensus 311 ~glrV~l~~~ 320 (442)
+.|+|.++.-
T Consensus 83 RelrVq~ary 92 (256)
T KOG4207|consen 83 RELRVQMARY 92 (256)
T ss_pred ceeeehhhhc
Confidence 9999998764
No 50
>PLN03213 repressor of silencing 3; Provisional
Probab=99.03 E-value=6e-10 Score=116.11 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=68.6
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCH--HHHHHHHHHhcCCc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYEST--DIAEKAVEKLNDER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~--edA~kAv~~Ln~~~ 307 (442)
..-+|||+||++++++++|+.+|+.||.|..|.|++. + .+|||||+|.+. .++.+||..||+..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--T------------GRGFAFVEMssdddaEeeKAISaLNGAE 74 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--K------------GRSFAYIDFSPSSTNSLTKLFSTYNGCV 74 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--c------------CCceEEEEecCCcHHHHHHHHHHhcCCe
Confidence 4568999999999999999999999999999999843 2 158999999987 68999999999999
Q ss_pred CCCCceEEEEeec
Q 046325 308 NWRKGLRVRVLLR 320 (442)
Q Consensus 308 ~~~~glrV~l~~~ 320 (442)
..++.|+|..+.+
T Consensus 75 WKGR~LKVNKAKP 87 (759)
T PLN03213 75 WKGGRLRLEKAKE 87 (759)
T ss_pred ecCceeEEeeccH
Confidence 8899999988754
No 51
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.01 E-value=9.5e-10 Score=117.09 Aligned_cols=76 Identities=24% Similarity=0.296 Sum_probs=69.0
Q ss_pred ccceEEcccCCC-CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPE-DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~-d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||+ .+|+++|+++|+.||.|..|+|.++. +|||||+|.+.++|.+|+..||+..+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~---------------~g~afV~f~~~~~A~~Ai~~lng~~l 338 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK---------------KETALIEMADPYQAQLALTHLNGVKL 338 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---------------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 568999999997 69999999999999999999997642 47999999999999999999999999
Q ss_pred CCCceEEEEeec
Q 046325 309 WRKGLRVRVLLR 320 (442)
Q Consensus 309 ~~~glrV~l~~~ 320 (442)
.++.|+|.+...
T Consensus 339 ~g~~l~v~~s~~ 350 (481)
T TIGR01649 339 FGKPLRVCPSKQ 350 (481)
T ss_pred CCceEEEEEccc
Confidence 999999988654
No 52
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.2e-10 Score=109.35 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=76.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
+.|||||++|.+++++.-|...|-.||.|+.|.|+.++.+.. .+||+||||+..|||..||..||+.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqk----------HRgFgFVefe~aEDAaaAiDNMnesEL~ 78 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQK----------HRGFGFVEFEEAEDAAAAIDNMNESELF 78 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhccc----------ccceeEEEeeccchhHHHhhcCchhhhc
Confidence 579999999999999999999999999999999988776432 2579999999999999999999999999
Q ss_pred CCceEEEEeecCCCc
Q 046325 310 RKGLRVRVLLRCSPK 324 (442)
Q Consensus 310 ~~glrV~l~~~~~~k 324 (442)
++.|+|.++++...|
T Consensus 79 GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 79 GRTIRVNLAKPEKIK 93 (298)
T ss_pred ceeEEEeecCCcccc
Confidence 999999999875544
No 53
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.00 E-value=2.7e-09 Score=80.92 Aligned_cols=73 Identities=36% Similarity=0.550 Sum_probs=62.4
Q ss_pred eEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCc
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKG 312 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~g 312 (442)
+|+|.|||.+++.++|+++|..||.|..+.+...... ..+++|||+|.+.++|..|+..+++..+++..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-----------~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~ 69 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-----------KSKGFAFVEFEDEEDAEKALEALNGKELGGRP 69 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-----------CcceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 5899999999999999999999999999999865432 12579999999999999999999988777665
Q ss_pred eEEE
Q 046325 313 LRVR 316 (442)
Q Consensus 313 lrV~ 316 (442)
+.|.
T Consensus 70 ~~v~ 73 (74)
T cd00590 70 LRVE 73 (74)
T ss_pred EEEe
Confidence 6554
No 54
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.99 E-value=5e-10 Score=104.23 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=73.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
+..||||+||++.++++-|.++|-+.|+|.+|.|+++..+. ..+|||||||.++|+|+-||+-||.-.+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~----------~~qGygF~Ef~~eedadYAikiln~VkLY 77 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ----------KHQGYGFAEFRTEEDADYAIKILNMVKLY 77 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc----------cccceeEEEEechhhhHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999998876533 13689999999999999999999999999
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
++.|+|..+.
T Consensus 78 grpIrv~kas 87 (203)
T KOG0131|consen 78 GRPIRVNKAS 87 (203)
T ss_pred CceeEEEecc
Confidence 9999999887
No 55
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.7e-09 Score=105.94 Aligned_cols=75 Identities=16% Similarity=0.288 Sum_probs=66.9
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
...+.+||||+|++.-+|+++|+..|+.||.|..||+.++ ||||||.|++.|+|.+||-.+|+.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----------------qGYaFVrF~tkEaAahAIv~mNnt 223 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----------------QGYAFVRFETKEAAAHAIVQMNNT 223 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----------------cceEEEEecchhhHHHHHHHhcCc
Confidence 3457899999999999999999999999999999999664 589999999999999999999999
Q ss_pred cCCCCceEEEE
Q 046325 307 RNWRKGLRVRV 317 (442)
Q Consensus 307 ~~~~~glrV~l 317 (442)
.+.+.-+++..
T Consensus 224 ei~G~~VkCsW 234 (321)
T KOG0148|consen 224 EIGGQLVRCSW 234 (321)
T ss_pred eeCceEEEEec
Confidence 98877555544
No 56
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.94 E-value=4.2e-09 Score=110.13 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=59.0
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
..+|||+|||.+++.++|+++|+.||.|+..+|..-.... ...+|+||+|++.++++.||.+- .+..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~----------~~~~fgFV~f~~~~~~~~~i~As---p~~i 354 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGG----------KNPCFGFVEFENAAAVQNAIEAS---PLEI 354 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCC----------CcCceEEEEEeecchhhhhhhcC---cccc
Confidence 4669999999999999999999999999999986522100 11279999999999999999643 4444
Q ss_pred CceEEEEeecC
Q 046325 311 KGLRVRVLLRC 321 (442)
Q Consensus 311 ~glrV~l~~~~ 321 (442)
.+.++.+.+.+
T Consensus 355 g~~kl~Veek~ 365 (419)
T KOG0116|consen 355 GGRKLNVEEKR 365 (419)
T ss_pred CCeeEEEEecc
Confidence 45555555543
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=2.2e-09 Score=107.39 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=72.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..+.|+|.|+|+...+.||+.+|.+||.|..|.|+-..+ ++|||+||+|++.+||++|-++|++....
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER------------GSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER------------GSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC------------CCCccceEEecChhhHHHHHHHhhcceee
Confidence 457899999999999999999999999999999986432 35799999999999999999999999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|.|..+-.+.
T Consensus 163 GRkIEVn~ATarV 175 (376)
T KOG0125|consen 163 GRKIEVNNATARV 175 (376)
T ss_pred ceEEEEeccchhh
Confidence 9999998876654
No 58
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=1.6e-10 Score=107.45 Aligned_cols=84 Identities=21% Similarity=0.273 Sum_probs=76.3
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
+-.++.-|||+|||++.|+.+|-.+|++||.|.+|.|.|+..++.+ |||||..|++.-+..-||..||+-
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKS----------KGFaFLcYEDQRSTILAVDN~NGi 100 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKS----------KGFAFLCYEDQRSTILAVDNLNGI 100 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcc----------cceEEEEecCccceEEEEeccCCc
Confidence 3446889999999999999999999999999999999998877654 689999999999999999999999
Q ss_pred cCCCCceEEEEeec
Q 046325 307 RNWRKGLRVRVLLR 320 (442)
Q Consensus 307 ~~~~~glrV~l~~~ 320 (442)
.+.++.|+|.....
T Consensus 101 ki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 101 KILGRTIRVDHVSN 114 (219)
T ss_pred eecceeEEeeeccc
Confidence 99999999987643
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.90 E-value=6e-09 Score=78.56 Aligned_cols=56 Identities=36% Similarity=0.479 Sum_probs=48.8
Q ss_pred HHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEe
Q 046325 248 LEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVL 318 (442)
Q Consensus 248 LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~ 318 (442)
|.++|++||+|..|.+.+.. +++|||+|.+.++|++|++.||+..+.++.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---------------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---------------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---------------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997642 269999999999999999999999998888888764
No 60
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.88 E-value=4e-09 Score=110.88 Aligned_cols=82 Identities=27% Similarity=0.365 Sum_probs=75.3
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRK 311 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~ 311 (442)
++|||+|+|++.++++|.++|+.+|.|.++++..|.+++. +|||+|+||.+.++|++|++.||+..+.++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~----------~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr 88 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGK----------PKGFGFCEFTDEETAERAIRNLNGAEFNGR 88 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCC----------cCceeeEecCchhhHHHHHHhcCCcccCCc
Confidence 8999999999999999999999999999999999887653 368999999999999999999999999999
Q ss_pred ceEEEEeecCCC
Q 046325 312 GLRVRVLLRCSP 323 (442)
Q Consensus 312 glrV~l~~~~~~ 323 (442)
.|+|.++.....
T Consensus 89 ~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 89 KLRVNYASNRKN 100 (435)
T ss_pred eEEeecccccch
Confidence 999998765544
No 61
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=1.8e-08 Score=104.35 Aligned_cols=80 Identities=26% Similarity=0.386 Sum_probs=69.1
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...+-|||+.||.|+.+++|.-||++.|+|-.+||..+..++. ++|||||.|.+.++|++||+.||+.++
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~----------nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei 150 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGD----------NRGYAFVTFCTKEEAQEAIKELNNYEI 150 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCC----------CcceEEEEeecHHHHHHHHHHhhCccc
Confidence 3568999999999999999999999999999999998765443 479999999999999999999999865
Q ss_pred C-CCceEEEEe
Q 046325 309 W-RKGLRVRVL 318 (442)
Q Consensus 309 ~-~~glrV~l~ 318 (442)
- ++-|.|++.
T Consensus 151 r~GK~igvc~S 161 (506)
T KOG0117|consen 151 RPGKLLGVCVS 161 (506)
T ss_pred cCCCEeEEEEe
Confidence 4 455777663
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=3.8e-09 Score=108.86 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=75.0
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..+.|||+-|+..+|+.+|+++|++||.|+.++|.++.+.. .+|||||.|++.|-|..||+.||+....
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~-----------sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGL-----------SRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccccc-----------ccceeEEEEehHHHHHHHHHhhccceee
Confidence 46889999999999999999999999999999999976532 3589999999999999999999997654
Q ss_pred ---CCceEEEEeecCCCcccc
Q 046325 310 ---RKGLRVRVLLRCSPKSVL 327 (442)
Q Consensus 310 ---~~glrV~l~~~~~~k~~~ 327 (442)
..+|-|+++.+.-+|..+
T Consensus 192 eGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 192 EGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred ccCCCceEEEecccCCCchHH
Confidence 357899998877666543
No 63
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=1e-08 Score=108.14 Aligned_cols=82 Identities=24% Similarity=0.283 Sum_probs=69.9
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC-----
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND----- 305 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~----- 305 (442)
.+||||+|||+++|+++|.+.|++||+|+++.||.+..+..+ +|+|||.|.+..+|++||...+-
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~s----------kGtAFv~Fkt~~~~~~ci~~Aspa~e~g 361 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHS----------KGTAFVKFKTQIAAQNCIEAASPASEDG 361 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCc----------ccceEEEeccHHHHHHHHHhcCccCCCc
Confidence 489999999999999999999999999999999998776543 68999999999999999987732
Q ss_pred -CcCCCCceEEEEeecCC
Q 046325 306 -ERNWRKGLRVRVLLRCS 322 (442)
Q Consensus 306 -~~~~~~glrV~l~~~~~ 322 (442)
..+.++-|.|.++.++-
T Consensus 362 ~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 362 SVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred eEEEeccEEeeeeccchH
Confidence 23456778888887653
No 64
>smart00361 RRM_1 RNA recognition motif.
Probab=98.75 E-value=2.6e-08 Score=78.90 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=49.9
Q ss_pred HHHHHHHHh----cCCCeEEEE-EeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEE
Q 046325 245 HQNLEKIFG----VVGSVKTIR-ICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRV 315 (442)
Q Consensus 245 ~e~LkelFs----~~G~V~~Vr-i~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV 315 (442)
+++|+++|+ .||.|..|. |..+..+... ..+|||||+|++.++|.+|+..||+..+.++.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~--------~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYEN--------HKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCC--------CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 5555443111 13689999999999999999999999888776665
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.75 E-value=2.1e-08 Score=106.43 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=60.4
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcC------------CCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHH
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVV------------GSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTD 294 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~------------G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~e 294 (442)
.....++|||+|||.++|+++|+++|..| +.|..|.+.+ .++||||||.+.+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~----------------~kg~afVeF~~~e 234 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK----------------EKNFAFLEFRTVE 234 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC----------------CCCEEEEEeCCHH
Confidence 34568999999999999999999999975 3455555543 2589999999999
Q ss_pred HHHHHHHHhcCCcCCCCceEEEE
Q 046325 295 IAEKAVEKLNDERNWRKGLRVRV 317 (442)
Q Consensus 295 dA~kAv~~Ln~~~~~~~glrV~l 317 (442)
+|.+|| .||+..+.+..|+|..
T Consensus 235 ~A~~Al-~l~g~~~~g~~l~v~r 256 (509)
T TIGR01642 235 EATFAM-ALDSIIYSNVFLKIRR 256 (509)
T ss_pred HHhhhh-cCCCeEeeCceeEecC
Confidence 999999 6999888777777653
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=6.5e-08 Score=100.22 Aligned_cols=127 Identities=23% Similarity=0.248 Sum_probs=95.0
Q ss_pred CCceecccccchhHHHhhcc------ChHHHHHHhhcCCceEEecCCccccccCCCCchhhhccccceEEcccCCCCCCH
Q 046325 172 EGFVPLSVIGSMKKIKSLVG------NNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSH 245 (442)
Q Consensus 172 eG~Vpi~~i~sF~kmK~Lt~------d~~~I~~AL~~S~~LeVseDg~kVRRk~Pl~e~~~~~~~~rTVyV~nLp~d~T~ 245 (442)
.-.|.+.+|.+. - .|.- +...+..||..-..-.+. |+.||-.. .. .+...|||.||+++++.
T Consensus 23 ~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~--~~~~rim~--s~-----rd~~~~~i~nl~~~~~~ 90 (369)
T KOG0123|consen 23 GPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLK--GKPIRIMW--SQ-----RDPSLVFIKNLDESIDN 90 (369)
T ss_pred CCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccC--CcEEEeeh--hc-----cCCceeeecCCCcccCc
Confidence 345788888888 4 5543 567777777655433332 33332221 11 12333999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEeecCCC
Q 046325 246 QNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 246 e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~~~~~~ 323 (442)
.+|.++|+.||.|.++++..+.. +.||| ||+|+++++|.+|+..||+..+.++.|.|-+..++..
T Consensus 91 ~~~~d~f~~~g~ilS~kv~~~~~------------g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 91 KSLYDTFSEFGNILSCKVATDEN------------GSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred HHHHHHHHhhcCeeEEEEEEcCC------------Cceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999877543 14789 9999999999999999999999999999988776543
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=2e-08 Score=96.82 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=62.8
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
-..|||++|+++++.+.|+++|++||+|....++.++.+..+ |||+||+|.+.|+|.+|++.-|- .+++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rs----------kGyGfVTf~d~~aa~rAc~dp~p-iIdG 80 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRS----------KGYGFVTFRDAEAATRACKDPNP-IIDG 80 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccc----------cceeeEEeecHHHHHHHhcCCCC-cccc
Confidence 456999999999999999999999999999998877655433 68999999999999999976553 3444
Q ss_pred CceEEEEe
Q 046325 311 KGLRVRVL 318 (442)
Q Consensus 311 ~glrV~l~ 318 (442)
+.-.|.|+
T Consensus 81 R~aNcnlA 88 (247)
T KOG0149|consen 81 RKANCNLA 88 (247)
T ss_pred cccccchh
Confidence 55555554
No 68
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=3.1e-09 Score=108.68 Aligned_cols=62 Identities=34% Similarity=0.532 Sum_probs=56.3
Q ss_pred HHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcC
Q 046325 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSS 203 (442)
Q Consensus 140 ~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S 203 (442)
.+..|..|||||||.+||..|.||+++|.+ +||||+++|..|.|.+.+..|..+|++||+.+
T Consensus 270 sI~a~k~QiEyYFseenl~~d~~lrkk~~k--aGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 270 SIMAKKEQIEYYFSEENLKSDEFLRKKFKK--AGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred ehhhHHhhhHhhhhHHhhhhhhHHHhhhhh--cccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 346777799999999999999999999955 69999999999999999999999999999865
No 69
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=5.7e-08 Score=100.31 Aligned_cols=89 Identities=17% Similarity=0.328 Sum_probs=72.5
Q ss_pred CCchhhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHH
Q 046325 221 FTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAV 300 (442)
Q Consensus 221 l~e~~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv 300 (442)
++..+..+.+.-.+||+-+|...+|.+|+++|++||.|..|-|++|+.++.+ ||||||.|.+.++|.+|+
T Consensus 24 ~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s----------~gcCFv~~~trk~a~~a~ 93 (510)
T KOG0144|consen 24 LDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQS----------KGCCFVKYYTRKEADEAI 93 (510)
T ss_pred CCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcc----------cceEEEEeccHHHHHHHH
Confidence 3333344456678999999999999999999999999999999998876543 689999999999999999
Q ss_pred HHhcCCcCCC---CceEEEEee
Q 046325 301 EKLNDERNWR---KGLRVRVLL 319 (442)
Q Consensus 301 ~~Ln~~~~~~---~glrV~l~~ 319 (442)
.+|.+..... ..+.|+.+.
T Consensus 94 ~Alhn~ktlpG~~~pvqvk~Ad 115 (510)
T KOG0144|consen 94 NALHNQKTLPGMHHPVQVKYAD 115 (510)
T ss_pred HHhhcccccCCCCcceeecccc
Confidence 9999865432 356777653
No 70
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.6e-08 Score=106.33 Aligned_cols=69 Identities=32% Similarity=0.439 Sum_probs=59.7
Q ss_pred HHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCccccc
Q 046325 140 LRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGKKVRR 217 (442)
Q Consensus 140 ~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~kVRR 217 (442)
..+.|.+|||||||.+||++|.||++ +||||++|+.|+||..|+.|+++|.+||+.+-+|++--| .++|
T Consensus 300 ~~~~~~~~ie~~FSeE~~~~d~~n~~-------k~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d--~~~r 368 (448)
T KOG2590|consen 300 VIAFIQEPIEFYFSEENLQRDRFNRE-------KFVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGD--LERR 368 (448)
T ss_pred cccccccccccccchHHHhhhhhhhc-------ccchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccch--hhhc
Confidence 45678899999999999999999876 558899999999999999999999999999988776633 4444
No 71
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=2.2e-07 Score=98.35 Aligned_cols=82 Identities=22% Similarity=0.258 Sum_probs=72.5
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
....|+|+|||+.+...+|+.+|+.||.|..|.|++..+.. -.|||||.|....+|.+|++.+|+..+.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk-----------lcGFaFV~fk~~~dA~~Al~~~N~~~i~ 184 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK-----------LCGFAFVQFKEKKDAEKALEFFNGNKID 184 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC-----------ccceEEEEEeeHHHHHHHHHhccCceec
Confidence 36789999999999999999999999999999997643321 2489999999999999999999999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.+-|..+..+.
T Consensus 185 gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 185 GRPVAVDWAVDKD 197 (678)
T ss_pred CceeEEeeecccc
Confidence 9999999987643
No 72
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=9.9e-08 Score=93.75 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=72.8
Q ss_pred eEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCc
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKG 312 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~g 312 (442)
-|||+.|..+++.+.|++.|..||+|...+|+|+..+..+ |||+||-|-..++|+.||..||+.=+.++.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~Ks----------KGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKS----------KGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcc----------cceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 5999999999999999999999999999999998765543 789999999999999999999999888888
Q ss_pred eEEEEeecCCC
Q 046325 313 LRVRVLLRCSP 323 (442)
Q Consensus 313 lrV~l~~~~~~ 323 (442)
||-..+-++..
T Consensus 134 IRTNWATRKp~ 144 (321)
T KOG0148|consen 134 IRTNWATRKPS 144 (321)
T ss_pred eeccccccCcc
Confidence 88888877663
No 73
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.58 E-value=1.5e-07 Score=90.35 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=71.5
Q ss_pred cceEEcccCCCCCCHHHHHH----HHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 231 SCTVVAENLPEDHSHQNLEK----IFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~Lke----lFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
..||||.||++.+..++|++ +|++||.|..|..++... -+|-|||.|.+.+.|..|++.|+|-
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~K-------------mRGQA~VvFk~~~~As~A~r~l~gf 75 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPK-------------MRGQAFVVFKETEAASAALRALQGF 75 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCC-------------ccCceEEEecChhHHHHHHHHhcCC
Confidence 45999999999999999988 999999999999886432 2589999999999999999999999
Q ss_pred cCCCCceEEEEeecCCC
Q 046325 307 RNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 307 ~~~~~glrV~l~~~~~~ 323 (442)
.+.++.|+|..+.....
T Consensus 76 pFygK~mriqyA~s~sd 92 (221)
T KOG4206|consen 76 PFYGKPMRIQYAKSDSD 92 (221)
T ss_pred cccCchhheecccCccc
Confidence 99999999999886554
No 74
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=88.97 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=73.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcC-CCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVV-GSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~-G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..-.+||..+|..+-+.+|..+|.+| |.|..+|+-|..+++.+ ||||||||+++|.|+-|.+.||+.-+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNS----------KgYAFVEFEs~eVA~IaAETMNNYLl 117 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNS----------KGYAFVEFESEEVAKIAAETMNNYLL 117 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCc----------CceEEEEeccHHHHHHHHHHhhhhhh
Confidence 45678999999999999999999998 88999999888777655 68999999999999999999999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++-|.|.++.+.
T Consensus 118 ~e~lL~c~vmppe 130 (214)
T KOG4208|consen 118 MEHLLECHVMPPE 130 (214)
T ss_pred hhheeeeEEeCch
Confidence 9999999998765
No 75
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=1.7e-07 Score=91.75 Aligned_cols=81 Identities=22% Similarity=0.373 Sum_probs=71.6
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
...|+|.=||...|+++|+.+|+..|+|+++.++|++-++.+ -||+||.|-+++||++||..||+-++..
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqS----------LGYGFVNYv~p~DAe~AintlNGLrLQ~ 110 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQS----------LGYGFVNYVRPKDAEKAINTLNGLRLQN 110 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccc----------cccceeeecChHHHHHHHhhhcceeecc
Confidence 345777789999999999999999999999999998755433 3899999999999999999999999999
Q ss_pred CceEEEEeecC
Q 046325 311 KGLRVRVLLRC 321 (442)
Q Consensus 311 ~glrV~l~~~~ 321 (442)
+.|+|..+.+-
T Consensus 111 KTIKVSyARPS 121 (360)
T KOG0145|consen 111 KTIKVSYARPS 121 (360)
T ss_pred ceEEEEeccCC
Confidence 99999998764
No 76
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=2.6e-07 Score=90.46 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=71.6
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
..+|||.||..++.+.-|+.+|+.||.|.+|.++++-.++.. |||+||...+-++|..||..||+..+..
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkC----------KGfgFVtMtNYdEAamAi~sLNGy~lg~ 347 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKC----------KGFGFVTMTNYDEAAMAIASLNGYRLGD 347 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccc----------cceeEEEecchHHHHHHHHHhcCccccc
Confidence 478999999999999999999999999999999998765433 6899999999999999999999999999
Q ss_pred CceEEEEee
Q 046325 311 KGLRVRVLL 319 (442)
Q Consensus 311 ~glrV~l~~ 319 (442)
+-|+|.+.-
T Consensus 348 rvLQVsFKt 356 (360)
T KOG0145|consen 348 RVLQVSFKT 356 (360)
T ss_pred eEEEEEEec
Confidence 999998743
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.55 E-value=1.7e-07 Score=96.97 Aligned_cols=79 Identities=25% Similarity=0.325 Sum_probs=68.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhc-CCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGV-VGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~-~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..|+|||.|+|+++..++|++||.+ .|+|..|.|+.+.. .. .+|||.|||+++|.++||++.||-...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK----------~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GK----------ARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CC----------cCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 4588999999999999999999965 89999999987653 11 368999999999999999999999888
Q ss_pred CCCceEEEEee
Q 046325 309 WRKGLRVRVLL 319 (442)
Q Consensus 309 ~~~glrV~l~~ 319 (442)
.++.|.|+...
T Consensus 112 ~GR~l~vKEd~ 122 (608)
T KOG4212|consen 112 NGRELVVKEDH 122 (608)
T ss_pred cCceEEEeccC
Confidence 88888887654
No 78
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.6e-07 Score=95.77 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=67.3
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRK 311 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~ 311 (442)
.+|||+ +++|+.+|.++|+.+|+|.+||+|++. + + -|||||.|.++++|++|+.+||-..+.++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--s----------lgy~yvnf~~~~da~~A~~~~n~~~~~~~ 65 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--S----------LGYAYVNFQQPADAERALDTMNFDVLKGK 65 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--c----------cceEEEecCCHHHHHHHHHHcCCcccCCc
Confidence 368999 899999999999999999999999987 4 3 27999999999999999999999999999
Q ss_pred ceEEEEeecCC
Q 046325 312 GLRVRVLLRCS 322 (442)
Q Consensus 312 glrV~l~~~~~ 322 (442)
.+++....+..
T Consensus 66 ~~rim~s~rd~ 76 (369)
T KOG0123|consen 66 PIRIMWSQRDP 76 (369)
T ss_pred EEEeehhccCC
Confidence 99988876543
No 79
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.50 E-value=2.9e-07 Score=100.57 Aligned_cols=82 Identities=24% Similarity=0.377 Sum_probs=75.0
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
.+.++||||+.|+..+++.+|..+|+.||+|.+|.|..+ .+||||......+|++|+..|++..
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~----------------R~cAfI~M~~RqdA~kalqkl~n~k 481 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP----------------RGCAFIKMVRRQDAEKALQKLSNVK 481 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC----------------CceeEEEEeehhHHHHHHHHHhccc
Confidence 578999999999999999999999999999999998653 4799999999999999999999998
Q ss_pred CCCCceEEEEeecCCCcc
Q 046325 308 NWRKGLRVRVLLRCSPKS 325 (442)
Q Consensus 308 ~~~~glrV~l~~~~~~k~ 325 (442)
+..+-|+|..+.....+.
T Consensus 482 v~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 482 VADKTIKIAWAVGKGPKS 499 (894)
T ss_pred ccceeeEEeeeccCCcch
Confidence 888889999988777766
No 80
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=1.6e-07 Score=95.33 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=67.8
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
-|.|||+.+.++..++.|+..|..||.|++|.|--+. .+.+ .||||||||+-+|.|+-|++.||+..+++
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp--~T~k--------HKgFAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP--ATGK--------HKGFAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccccc--cccc--------ccceEEEEEeCcHHHHHHHHHhccccccC
Confidence 4789999999999999999999999999999985433 2222 46899999999999999999999999999
Q ss_pred CceEEEE
Q 046325 311 KGLRVRV 317 (442)
Q Consensus 311 ~glrV~l 317 (442)
+.|+|-.
T Consensus 183 RNiKVgr 189 (544)
T KOG0124|consen 183 RNIKVGR 189 (544)
T ss_pred ccccccC
Confidence 9998874
No 81
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=5.6e-07 Score=91.00 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=67.2
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
++....||||++|-..+++.+|.+.|.+||+|.+|++... ++||||+|.+.++|++|.+++-+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~----------------~~CAFv~ftTR~aAE~Aae~~~n- 286 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR----------------KGCAFVTFTTREAAEKAAEKSFN- 286 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc----------------cccceeeehhhHHHHHHHHhhcc-
Confidence 4456799999999889999999999999999999998642 47999999999999999997776
Q ss_pred cCCCCceEEEEeecCC
Q 046325 307 RNWRKGLRVRVLLRCS 322 (442)
Q Consensus 307 ~~~~~glrV~l~~~~~ 322 (442)
.+..+|.||.|...++
T Consensus 287 ~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 287 KLVINGFRLKIKWGRP 302 (377)
T ss_pred eeeecceEEEEEeCCC
Confidence 5556788888876544
No 82
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.41 E-value=4e-07 Score=96.49 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=104.8
Q ss_pred ccCCCCChhHH-HHhhhcCCCCCceecccccch--hHHHhhc----cChHHHHHHhhcCCceEE--------ecCCc-cc
Q 046325 152 FSDMSLLANET-LSKHVNKDPEGFVPLSVIGSM--KKIKSLV----GNNHLLAQALRSSSKLIV--------SNDGK-KV 215 (442)
Q Consensus 152 FSd~NL~~D~f-L~~~m~~d~eG~Vpi~~i~sF--~kmK~Lt----~d~~~I~~AL~~S~~LeV--------seDg~-kV 215 (442)
.+.-+=++|.| +.+...+ +.++.+|..= .|.|.+. .|.+.|..||..+..+.+ ++..+ ..
T Consensus 187 la~r~~pRdL~efFs~~gk----VrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~ 262 (549)
T KOG0147|consen 187 LARRNPPRDLEEFFSIVGK----VRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRA 262 (549)
T ss_pred HhhcCCchhHHHHHHhhcC----cceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHH
Confidence 34455578877 6665522 2366666652 3444443 377888777776654332 22111 11
Q ss_pred cccCCCCchhhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHH
Q 046325 216 RRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDI 295 (442)
Q Consensus 216 RRk~Pl~e~~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~ed 295 (442)
.-..++-.--....+-+.|||+||..++++++|+.+|+.||.|..|.+.++.+++. .|||+||+|.+.++
T Consensus 263 a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~----------skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 263 ANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGR----------SKGFGFITFVNKED 332 (549)
T ss_pred HhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccccc----------ccCcceEEEecHHH
Confidence 01111111000011223399999999999999999999999999999988755443 36899999999999
Q ss_pred HHHHHHHhcCCcCCCCceEEEEeecCC
Q 046325 296 AEKAVEKLNDERNWRKGLRVRVLLRCS 322 (442)
Q Consensus 296 A~kAv~~Ln~~~~~~~glrV~l~~~~~ 322 (442)
|.+|++.||+-.+-++.|+|.+...+.
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeec
Confidence 999999999988889999998876544
No 83
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.34 E-value=7.5e-07 Score=92.32 Aligned_cols=74 Identities=27% Similarity=0.369 Sum_probs=65.5
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
.+.|+|||+|||.++|.+.|++-|.+||.|.++.|..+.. .|| .|.|.++++|+.|++.||+..+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gk-------------skG--VVrF~s~edAEra~a~Mngs~l 598 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGK-------------SKG--VVRFFSPEDAERACALMNGSRL 598 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCC-------------ccc--eEEecCHHHHHHHHHHhccCcc
Confidence 4689999999999999999999999999999999854321 133 7999999999999999999999
Q ss_pred CCCceEEEE
Q 046325 309 WRKGLRVRV 317 (442)
Q Consensus 309 ~~~glrV~l 317 (442)
.++-|.|++
T Consensus 599 ~Gr~I~V~y 607 (608)
T KOG4212|consen 599 DGRNIKVTY 607 (608)
T ss_pred cCceeeeee
Confidence 999999986
No 84
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6.8e-07 Score=90.63 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=71.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
+...|||--|.+-+|.++|+-||+.||.|.+..++++..++-+ + -||||||++.+++++|+-.|++..+.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds------L----qyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS------L----QYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch------h----heeeeeecchhhHHHHHhhhcceeec
Confidence 5688999999999999999999999999999999998776543 2 49999999999999999999999988
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
.+.|.|.+..
T Consensus 308 DrRIHVDFSQ 317 (479)
T KOG0415|consen 308 DRRIHVDFSQ 317 (479)
T ss_pred cceEEeehhh
Confidence 8889988854
No 85
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=1.5e-06 Score=94.34 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=69.6
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRK 311 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~ 311 (442)
.+|||+||++++|.++|+.+|..+|.|..|.|....+... .+ -+.||+||||.+.++|+.|++.|++..+.+.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~------k~-lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH 588 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPAN------KY-LSMGFGFVEFAKPESAQAALKALQGTVLDGH 588 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccc------cc-cccceeEEEecCHHHHHHHHHHhcCceecCc
Confidence 3499999999999999999999999999999876433211 11 1358999999999999999999999999999
Q ss_pred ceEEEEee
Q 046325 312 GLRVRVLL 319 (442)
Q Consensus 312 glrV~l~~ 319 (442)
.|.|++..
T Consensus 589 ~l~lk~S~ 596 (725)
T KOG0110|consen 589 KLELKISE 596 (725)
T ss_pred eEEEEecc
Confidence 99999987
No 86
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.19 E-value=3.2e-06 Score=82.51 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=76.2
Q ss_pred hhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 225 EREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 225 ~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
.+.+++.+.|||+|+...+|.++|+..|+.||.|..|.|+.++.... .|+||||+|.+.+.+++|+. ||
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~----------~k~~~yvef~~~~~~~~ay~-l~ 163 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGH----------PKGFAYVEFSSYELVEEAYK-LD 163 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCC----------cceeEEEecccHhhhHHHhh-cC
Confidence 34567889999999999999999999999999999999987654322 37899999999999999997 99
Q ss_pred CCcCCCCceEEEEeecCCC
Q 046325 305 DERNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 305 ~~~~~~~glrV~l~~~~~~ 323 (442)
+..+.+..+.|.....+.+
T Consensus 164 gs~i~~~~i~vt~~r~~~p 182 (231)
T KOG4209|consen 164 GSEIPGPAIEVTLKRTNVP 182 (231)
T ss_pred CcccccccceeeeeeeecC
Confidence 9999999899988777644
No 87
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.18 E-value=2.1e-06 Score=85.29 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=65.5
Q ss_pred eEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCc
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKG 312 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~g 312 (442)
.|||+|||..+++.+|+.+|++||+|....|++ .|+||..|+...|+.||..|++..+.+..
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------------------NYgFVHiEdktaaedairNLhgYtLhg~n 65 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK------------------NYGFVHIEDKTAAEDAIRNLHGYTLHGVN 65 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec------------------ccceEEeecccccHHHHhhcccceecceE
Confidence 489999999999999999999999999999864 59999999999999999999999999888
Q ss_pred eEEEEeecC
Q 046325 313 LRVRVLLRC 321 (442)
Q Consensus 313 lrV~l~~~~ 321 (442)
|.|+-.+.+
T Consensus 66 InVeaSksK 74 (346)
T KOG0109|consen 66 INVEASKSK 74 (346)
T ss_pred EEEEecccc
Confidence 888887765
No 88
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.18 E-value=2.5e-06 Score=92.77 Aligned_cols=79 Identities=15% Similarity=0.335 Sum_probs=65.9
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
...|+|+|+|+..+..+|+.||..||.|+.|||+.-.... ...|||||+|-+..+|.+|+..|....+.+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~----------a~rGF~Fv~f~t~~ea~nA~~al~STHlyG 682 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKG----------AHRGFGFVDFLTPREAKNAFDALGSTHLYG 682 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcch----------hhccceeeeccCcHHHHHHHHhhcccceec
Confidence 3569999999999999999999999999999997642211 235899999999999999999999888887
Q ss_pred CceEEEEee
Q 046325 311 KGLRVRVLL 319 (442)
Q Consensus 311 ~glrV~l~~ 319 (442)
+-|-+..+.
T Consensus 683 RrLVLEwA~ 691 (725)
T KOG0110|consen 683 RRLVLEWAK 691 (725)
T ss_pred hhhheehhc
Confidence 766655544
No 89
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.18 E-value=5.7e-06 Score=81.18 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=70.0
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
..+|+|.|||+.++.++|+++|..||.++.+-|.++.. +. ..|+|-|.|+..+||..|++.|++..+.+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~----------s~Gta~v~~~r~~DA~~avk~~~gv~ldG 151 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GR----------SLGTADVSFNRRDDAERAVKKYNGVALDG 151 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CC----------CCccceeeecchHhHHHHHHHhcCcccCC
Confidence 46799999999999999999999999999998866532 11 24799999999999999999999998998
Q ss_pred CceEEEEeecCC
Q 046325 311 KGLRVRVLLRCS 322 (442)
Q Consensus 311 ~glrV~l~~~~~ 322 (442)
..|++.++....
T Consensus 152 ~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 152 RPMKIEIISSPS 163 (243)
T ss_pred ceeeeEEecCcc
Confidence 889998877543
No 90
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.15 E-value=2.2e-06 Score=86.90 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=67.8
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
.+.|||++||.++++++++++|.+||.|..+.+..+..+.. .++|+||.|.+++++.+++. ..-..+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~----------~rgFgfv~~~~e~sVdkv~~-~~f~~~~g 165 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSR----------PRGFGFVTFDSEDSVDKVTL-QKFHDFNG 165 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccc----------cccceeeEeccccccceecc-cceeeecC
Confidence 56899999999999999999999999999999888776543 35899999999999999984 44455666
Q ss_pred CceEEEEeecCCCc
Q 046325 311 KGLRVRVLLRCSPK 324 (442)
Q Consensus 311 ~glrV~l~~~~~~k 324 (442)
+-+.|+.+.++...
T Consensus 166 k~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 166 KKVEVKRAIPKEVM 179 (311)
T ss_pred ceeeEeeccchhhc
Confidence 67778777766543
No 91
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.09 E-value=4.1e-06 Score=83.23 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=68.9
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
.+.+|+|+|+...++.++|++.|.+||.|....|.+ +|+||.|+-.++|..|++.||+..+.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk------------------dy~fvh~d~~eda~~air~l~~~~~~ 138 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------------------DYAFVHFDRAEDAVEAIRGLDNTEFQ 138 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeec------------------ceeEEEEeeccchHHHHhcccccccc
Confidence 467899999999999999999999999999999865 59999999999999999999999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|.|.|.-.+.
T Consensus 139 gk~m~vq~stsrl 151 (346)
T KOG0109|consen 139 GKRMHVQLSTSRL 151 (346)
T ss_pred cceeeeeeecccc
Confidence 9999999965543
No 92
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.08 E-value=2.2e-06 Score=82.26 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=70.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..+||||.||-+.++++-|.|+|-+-|+|..|-|+..++... | ||||+|+++-+..-|+..||+..+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-----------k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-----------K-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-----------c-eeeeecccccchhhhhhhcccchhc
Confidence 469999999999999999999999999999999987665332 3 9999999999999999999999999
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.++|.+-...
T Consensus 76 ~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 76 EDEEQRTLRCGN 87 (267)
T ss_pred cchhhcccccCC
Confidence 988888875543
No 93
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=5.4e-06 Score=81.64 Aligned_cols=86 Identities=21% Similarity=0.344 Sum_probs=75.3
Q ss_pred hhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 226 REELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 226 ~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
++..+.|.|||.-||.+....+|...|-.||.|.+..+.-++.++.+ |.|.||-|++..+|+.||..||+
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQS----------KCFGFVSfDNp~SaQaAIqAMNG 349 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQS----------KCFGFVSFDNPASAQAAIQAMNG 349 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccc----------cceeeEecCCchhHHHHHHHhcc
Confidence 34557899999999999999999999999999999988777766544 57999999999999999999999
Q ss_pred CcCCCCceEEEEeecC
Q 046325 306 ERNWRKGLRVRVLLRC 321 (442)
Q Consensus 306 ~~~~~~glrV~l~~~~ 321 (442)
-.++-+.|+|.|..++
T Consensus 350 FQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 350 FQIGMKRLKVQLKRPK 365 (371)
T ss_pred hhhhhhhhhhhhcCcc
Confidence 9998888888875543
No 94
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.04 E-value=1e-05 Score=75.84 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=69.8
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEE-EEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTI-RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~V-ri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
...+||+||...+.+.-|.++|+.||.+... .|.++..++. .++|+||.|++.|.+.+|+..+|+..+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~----------~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGN----------PKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCC----------CCCCeEEechhHHHHHHHHHHhccchhc
Confidence 4679999999999999999999999987553 2444333332 3589999999999999999999999999
Q ss_pred CCceEEEEeecCCCc
Q 046325 310 RKGLRVRVLLRCSPK 324 (442)
Q Consensus 310 ~~glrV~l~~~~~~k 324 (442)
.+.+.|..+.++..|
T Consensus 166 nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTK 180 (203)
T ss_pred CCceEEEEEEecCCC
Confidence 999999999876554
No 95
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.02 E-value=1e-05 Score=79.66 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=68.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
+.|.|||+-|...-++|+++.+|..||.|..+.+.+-.+ ...||||||.|.+..+|+.||..|.+.+..
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-----------g~sKGCAFVKf~s~~eAqaAI~aLHgSqTm 86 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-----------GNSKGCAFVKFSSHAEAQAAINALHGSQTM 86 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-----------CCCCCceEEEeccchHHHHHHHHhcccccC
Confidence 578899999999999999999999999999999887543 235799999999999999999999998765
Q ss_pred C---CceEEEEeec
Q 046325 310 R---KGLRVRVLLR 320 (442)
Q Consensus 310 ~---~glrV~l~~~ 320 (442)
. ..|-|+++.+
T Consensus 87 pGASSSLVVK~ADT 100 (371)
T KOG0146|consen 87 PGASSSLVVKFADT 100 (371)
T ss_pred CCCccceEEEeccc
Confidence 3 3467777654
No 96
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=3.8e-06 Score=89.34 Aligned_cols=72 Identities=29% Similarity=0.416 Sum_probs=63.2
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
+...++|+|-|||..++.++|..+|+.||+|+.|++-... .+++||||=+.-+|+.|+++||...
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---------------~~~~~v~FyDvR~A~~Alk~l~~~~ 136 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---------------RGIVFVEFYDVRDAERALKALNRRE 136 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---------------CceEEEEEeehHhHHHHHHHHHHHH
Confidence 5678999999999999999999999999999998874422 4799999999999999999999887
Q ss_pred CCCCceE
Q 046325 308 NWRKGLR 314 (442)
Q Consensus 308 ~~~~glr 314 (442)
+.++.|+
T Consensus 137 ~~~~~~k 143 (549)
T KOG4660|consen 137 IAGKRIK 143 (549)
T ss_pred hhhhhhc
Confidence 7766555
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.90 E-value=7.3e-06 Score=79.05 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=59.4
Q ss_pred eEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCc
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKG 312 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~g 312 (442)
-|||++||+.+.+.+|++||..||.|..|.|.. ||+||+|++.-+|..||..||+..+.+..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------------------gf~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN------------------GFGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec------------------ccceeccCchhhhhcccchhcCceeccee
Confidence 589999999999999999999999999998832 68999999999999999999999888655
Q ss_pred eEEEEe
Q 046325 313 LRVRVL 318 (442)
Q Consensus 313 lrV~l~ 318 (442)
+.|..+
T Consensus 65 ~vve~~ 70 (216)
T KOG0106|consen 65 LVVEHA 70 (216)
T ss_pred eeeecc
Confidence 444433
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=4.3e-05 Score=65.96 Aligned_cols=59 Identities=24% Similarity=0.463 Sum_probs=40.6
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
+.|.|.+++.+++.++|+++|+.||.|..|.+.+. ...|||-|.+.++|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G----------------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG----------------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----------------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC----------------CCEEEEEECCcchHHHHHHHHHhc
Confidence 57899999999999999999999999999998652 137999999999999999988766
No 99
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.83 E-value=3.1e-05 Score=79.04 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=67.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
.-..|||..+..|.++++|+.+|+.||+|+.+.+.+..... +.|||+||||++..+-..||..||--.++
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~----------~HkGyGfiEy~n~qs~~eAiasMNlFDLG 278 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR----------GHKGYGFIEYNNLQSQSEAIASMNLFDLG 278 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC----------CccceeeEEeccccchHHHhhhcchhhcc
Confidence 45789999999999999999999999999999998754321 35789999999999999999999977777
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
+.=|||--..
T Consensus 279 GQyLRVGk~v 288 (544)
T KOG0124|consen 279 GQYLRVGKCV 288 (544)
T ss_pred cceEeccccc
Confidence 7667765443
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.82 E-value=4.2e-05 Score=77.66 Aligned_cols=87 Identities=22% Similarity=0.249 Sum_probs=66.3
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCccc--ccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKS--DFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg--~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
......|||.|||.++|.+++.++|+.||-|.. +..++..++|- +--+..||=|+++|-..|+++-|+..|++
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~-----d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMR-----DPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEec-----cCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCc
Confidence 445567999999999999999999999997632 22222222221 11234578899999999999999999999
Q ss_pred CcCCCCceEEEEee
Q 046325 306 ERNWRKGLRVRVLL 319 (442)
Q Consensus 306 ~~~~~~glrV~l~~ 319 (442)
..+.+.-|+|..+.
T Consensus 206 ~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 206 DELRGKKLRVERAK 219 (382)
T ss_pred ccccCcEEEEehhh
Confidence 99988888888765
No 101
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.76 E-value=5.1e-05 Score=81.05 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=71.4
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
.|.|+|.+|...+...+|+.||++||+|.-..++....+... +.|.||++.+.++|.+||..|.-..+.+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGa----------RCYGfVTMSts~eAtkCI~hLHrTELHG 474 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGA----------RCYGFVTMSTSAEATKCIEHLHRTELHG 474 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCc----------ceeEEEEecchHHHHHHHHHhhhhhhcc
Confidence 577999999999999999999999999999888776554333 4699999999999999999999999999
Q ss_pred CceEEEEeecCC
Q 046325 311 KGLRVRVLLRCS 322 (442)
Q Consensus 311 ~glrV~l~~~~~ 322 (442)
+-|.|.-++..+
T Consensus 475 rmISVEkaKNEp 486 (940)
T KOG4661|consen 475 RMISVEKAKNEP 486 (940)
T ss_pred eeeeeeecccCc
Confidence 989998877644
No 102
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.53 E-value=8.8e-05 Score=75.41 Aligned_cols=62 Identities=15% Similarity=0.301 Sum_probs=54.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHH
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 301 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~ 301 (442)
+.+.|||++|+++++++.|++.|+.||+|..+.+.++..+..+ ++|.||+|++.+....++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rs----------rgFgfv~f~~~~~v~~vl~ 66 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRS----------RGFGFVTFATPEGVDAVLN 66 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCc----------ccccceecCCCcchheeec
Confidence 5789999999999999999999999999999998887665433 4899999999888877774
No 103
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=97.49 E-value=6.6e-05 Score=44.90 Aligned_cols=17 Identities=53% Similarity=0.770 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCcCCCCC
Q 046325 66 APFKFNVQAPEFVPRSH 82 (442)
Q Consensus 66 ~~~~~n~~apefvpr~~ 82 (442)
..|+||+.||||||++.
T Consensus 2 ~~s~LNp~A~eFvP~~~ 18 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSSK 18 (18)
T ss_dssp -SSSSSTTSSSS-TTTT
T ss_pred cccccCCCCccccCCCC
Confidence 47899999999999863
No 104
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.47 E-value=0.00014 Score=79.40 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=67.9
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
+.+...|||.||+..++++.|...|+.||+|..|+|.-|.....++ ....|+||-|-+..||+.|+++|++..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~-------r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKR-------RERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhc-------cccccceeeehhhhhHHHHHHHhccee
Confidence 3456779999999999999999999999999999998876544332 124699999999999999999999977
Q ss_pred CCCCceEEEE
Q 046325 308 NWRKGLRVRV 317 (442)
Q Consensus 308 ~~~~glrV~l 317 (442)
+....|++-.
T Consensus 244 v~~~e~K~gW 253 (877)
T KOG0151|consen 244 VMEYEMKLGW 253 (877)
T ss_pred eeeeeeeecc
Confidence 6655555444
No 105
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.41 E-value=0.00038 Score=72.18 Aligned_cols=75 Identities=28% Similarity=0.392 Sum_probs=66.4
Q ss_pred cceEEcccCC-CCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 231 SCTVVAENLP-EDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 231 ~rTVyV~nLp-~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..+|.|.||. +.+|.+-|-.+|+.||+|.+|.|.+.+ |..|+|.|.+...|+-|+..|++..+|
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk---------------kd~ALIQmsd~~qAqLA~~hL~g~~l~ 361 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK---------------KDNALIQMSDGQQAQLAMEHLEGHKLY 361 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC---------------CcceeeeecchhHHHHHHHHhhcceec
Confidence 4678888985 468999999999999999999998743 358999999999999999999999999
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
++.|+|.+.+-
T Consensus 362 gk~lrvt~SKH 372 (492)
T KOG1190|consen 362 GKKLRVTLSKH 372 (492)
T ss_pred CceEEEeeccC
Confidence 99999988654
No 106
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.40 E-value=0.00096 Score=64.67 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=60.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
.-|||||.+||.|+.--+|..+|-.|---+..-|..- .|++.. -|.+|||.|.+..+|+.|+..||+-+++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~T-------sk~~~~--~~pvaFatF~s~q~A~aamnaLNGvrFD 103 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYT-------SKGDQV--CKPVAFATFTSHQFALAAMNALNGVRFD 103 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeec-------cCCCcc--ccceEEEEecchHHHHHHHHHhcCeeec
Confidence 3699999999999999999999988743222222111 111110 1469999999999999999999998876
Q ss_pred C---CceEEEEeecC
Q 046325 310 R---KGLRVRVLLRC 321 (442)
Q Consensus 310 ~---~glrV~l~~~~ 321 (442)
. ..|++++++-.
T Consensus 104 pE~~stLhiElAKSN 118 (284)
T KOG1457|consen 104 PETGSTLHIELAKSN 118 (284)
T ss_pred cccCceeEeeehhcC
Confidence 4 55888877643
No 107
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.37 E-value=0.00097 Score=55.61 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=47.0
Q ss_pred ceEEcccCCCCCCHHH----HHHHHhcCC-CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 232 CTVVAENLPEDHSHQN----LEKIFGVVG-SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~----LkelFs~~G-~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
..|||.|||.+..... |+.|+..|| .|..|. .+.|+|-|.+.|.|.+|.+.|+++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------------------~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------------------GGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------------------TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------------------CCEEEEEeCCHHHHHHHHHhhccc
Confidence 4699999999887654 557777886 566652 258999999999999999999999
Q ss_pred cCCCCceEEEEee
Q 046325 307 RNWRKGLRVRVLL 319 (442)
Q Consensus 307 ~~~~~glrV~l~~ 319 (442)
...+..|.|.+..
T Consensus 63 dVfG~kI~v~~~~ 75 (90)
T PF11608_consen 63 DVFGNKISVSFSP 75 (90)
T ss_dssp -SSSS--EEESS-
T ss_pred ccccceEEEEEcC
Confidence 9999999988753
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.32 E-value=0.00044 Score=52.48 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=42.7
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHH
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAV 300 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv 300 (442)
++|.|.+++.+.. +.|.+.|..||+|..+.+.. ...++||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~----------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE----------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC----------------CCcEEEEEECCHHHHHhhC
Confidence 6799999997655 56666999999999998851 1248999999999999996
No 109
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.31 E-value=0.00012 Score=77.96 Aligned_cols=80 Identities=28% Similarity=0.358 Sum_probs=69.9
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
++.+.||||+--++-..+.-+|.+||+.+|.|..|+|+.+..+.. .||.|||||.+.++...|| .|+|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~r----------skgi~Yvef~D~~sVp~ai-aLsGq 243 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRR----------SKGIAYVEFCDEQSVPLAI-ALSGQ 243 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchh----------hcceeEEEEecccchhhHh-hhcCC
Confidence 456789999999999999999999999999999999988765432 3689999999999999999 89999
Q ss_pred cCCCCceEEEE
Q 046325 307 RNWRKGLRVRV 317 (442)
Q Consensus 307 ~~~~~glrV~l 317 (442)
.+.+..|.|.+
T Consensus 244 rllg~pv~vq~ 254 (549)
T KOG0147|consen 244 RLLGVPVIVQL 254 (549)
T ss_pred cccCceeEecc
Confidence 99977777766
No 110
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.16 E-value=0.0014 Score=67.17 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=69.9
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccc---cccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSD---FFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~---~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
..-||||.+||..++++.|.++|.+||.|+. ++.+....++.+ .-...|+-|.|.|++.-.|+.||..++..
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-----nK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKR-----NKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceecc-----CCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 5679999999999999999999999998753 222211111111 11246789999999999999999999999
Q ss_pred cCCCCceEEEEeecCCC
Q 046325 307 RNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 307 ~~~~~glrV~l~~~~~~ 323 (442)
.+.++.|+|.++..+..
T Consensus 140 df~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRTG 156 (351)
T ss_pred cccCCCchhhhhhhccC
Confidence 99999999999987764
No 111
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.16 E-value=0.002 Score=55.08 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=55.0
Q ss_pred ceEEcccCCCCCCHHHHHHHHhc--CCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGV--VGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~--~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
.||.|+|+|-..|.++|.+++.. .|....+-|+-+-.+. .+.|||||.|.+.++|.+..+.+++...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~----------~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNK----------CNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCC----------CceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 58999999999999999999876 4667777776554322 3579999999999999999999998653
No 112
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.06 E-value=0.00071 Score=65.55 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=51.6
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
.||||-||..++++++|+.+|+.|--...++|.... ....|||+|++.+.|..|+..|.+..
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~--------------g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG--------------GMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC--------------CcceEeecHHHHHHHHHHHHHhhcce
Confidence 589999999999999999999999876666664311 12489999999999999999888754
No 113
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.02 E-value=0.00038 Score=67.32 Aligned_cols=69 Identities=25% Similarity=0.342 Sum_probs=60.2
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...+.++|.+++..+.+.+|++.|..+|.+..+.+. .+++||+|++.++|.+|+..|++..+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~------------------~~~~~v~Fs~~~da~ra~~~l~~~~~ 158 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR------------------RNFAFVEFSEQEDAKRALEKLDGKKL 158 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhh------------------ccccceeehhhhhhhhcchhccchhh
Confidence 456789999999999999999999999999666552 25899999999999999999999998
Q ss_pred CCCceEE
Q 046325 309 WRKGLRV 315 (442)
Q Consensus 309 ~~~glrV 315 (442)
.++-|.|
T Consensus 159 ~~~~l~~ 165 (216)
T KOG0106|consen 159 NGRRISV 165 (216)
T ss_pred cCceeee
Confidence 8777777
No 114
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.96 E-value=0.0019 Score=68.40 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=48.5
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHh
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL 303 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~L 303 (442)
..-|-+.+||+.+|+++|.+||+.|+ |.++.+.+..-. ..|-|||||.++||+++|++.-
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr------------~sGeA~Ve~~seedv~~Alkkd 69 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGR------------PSGEAYVEFTSEEDVEKALKKD 69 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCC------------cCcceEEEeechHHHHHHHHhh
Confidence 45677899999999999999999995 677776654211 2478999999999999999743
No 115
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.95 E-value=0.002 Score=62.28 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=63.1
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
..+..++++.|||..++.+.|..+|.+|.--+.||++... ++.|||||.+...|..|...|.+-.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~---------------~~iAfve~~~d~~a~~a~~~lq~~~ 207 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR---------------SGIAFVEFLSDRQASAAQQALQGFK 207 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC---------------CceeEEecchhhhhHHHhhhhccce
Confidence 3457899999999999999999999999999999998642 4799999999999999998888766
Q ss_pred CC-CCceEEEEe
Q 046325 308 NW-RKGLRVRVL 318 (442)
Q Consensus 308 ~~-~~glrV~l~ 318 (442)
+. ...|+|..+
T Consensus 208 it~~~~m~i~~a 219 (221)
T KOG4206|consen 208 ITKKNTMQITFA 219 (221)
T ss_pred eccCceEEeccc
Confidence 55 344555543
No 116
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.90 E-value=0.0021 Score=65.53 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=61.7
Q ss_pred ccccceEEcccCCCCCCHHHH------HHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccE--EEEEeCCHHHHHHH
Q 046325 228 ELQSCTVVAENLPEDHSHQNL------EKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLH--ALVEYESTDIAEKA 299 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~L------kelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~--AFVEFes~edA~kA 299 (442)
.++..-|||-+|+..+..|++ .++|++||.|+.|-+.+......+ ..++ .||+|.+.|||..|
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~ns---------t~~h~gvYITy~~kedAarc 181 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNS---------TASHAGVYITYSTKEDAARC 181 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccccccccc---------ccccceEEEEecchHHHHHH
Confidence 346678999999988766652 489999999999998654322211 1133 49999999999999
Q ss_pred HHHhcCCcCCCCceEEEE
Q 046325 300 VEKLNDERNWRKGLRVRV 317 (442)
Q Consensus 300 v~~Ln~~~~~~~glrV~l 317 (442)
|.+.++...+++-|+...
T Consensus 182 Ia~vDgs~~DGr~lkatY 199 (480)
T COG5175 182 IAEVDGSLLDGRVLKATY 199 (480)
T ss_pred HHHhccccccCceEeeec
Confidence 999999998887666554
No 117
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.64 E-value=0.004 Score=66.06 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=80.1
Q ss_pred eccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcC------CceEEecCC----ccccccCC
Q 046325 151 QFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSS------SKLIVSNDG----KKVRRKHP 220 (442)
Q Consensus 151 YFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S------~~LeVseDg----~kVRRk~P 220 (442)
+|||.++..=.|-+..=+.+.|-||-+. ..+.+..||+.. .-|||-..+ +.+-+..
T Consensus 30 Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~-------------seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~- 95 (510)
T KOG4211|consen 30 FFSNCGIENLEIPRRNGRPSGEAYVEFT-------------SEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPG- 95 (510)
T ss_pred HHhcCceeEEEEeccCCCcCcceEEEee-------------chHHHHHHHHhhHHHhCCceEEEEccCCccccccccCC-
Confidence 7888887762222221222344455432 346666676632 347776432 1222221
Q ss_pred CCchhhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEE-EEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHH
Q 046325 221 FTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKT-IRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKA 299 (442)
Q Consensus 221 l~e~~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~-Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kA 299 (442)
... .....-+|-+++||+.+|+++|.+||+-.-.|.. |.|+.++.- | ..|-|||.|++.|+|++|
T Consensus 96 -g~~--s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rg---R--------~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 96 -GPN--SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRG---R--------PTGEAFVQFESQESAEIA 161 (510)
T ss_pred -CCC--CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCC---C--------cccceEEEecCHHHHHHH
Confidence 111 1124567999999999999999999997655544 545544331 1 247999999999999999
Q ss_pred HHHhcCCcCCCCceEE
Q 046325 300 VEKLNDERNWRKGLRV 315 (442)
Q Consensus 300 v~~Ln~~~~~~~glrV 315 (442)
+..-+ +.+..+-|.|
T Consensus 162 l~rhr-e~iGhRYIEv 176 (510)
T KOG4211|consen 162 LGRHR-ENIGHRYIEV 176 (510)
T ss_pred HHHHH-HhhccceEEe
Confidence 96544 3333333443
No 118
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.54 E-value=0.002 Score=69.25 Aligned_cols=81 Identities=19% Similarity=0.307 Sum_probs=71.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
....+||++||...++.++.++...||.++..+++.+..++ .+|||||.||.+......|++.||+..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g----------~skg~af~ey~dpsvtd~A~agLnGm~lg 357 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG----------NSKGFAFCEYCDPSVTDQAIAGLNGMQLG 357 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc----------cccceeeeeeeCCcchhhhhcccchhhhc
Confidence 34679999999999999999999999999999998876543 24799999999999999999999999999
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
.+.|-|..+..
T Consensus 358 d~~lvvq~A~~ 368 (500)
T KOG0120|consen 358 DKKLVVQRAIV 368 (500)
T ss_pred CceeEeehhhc
Confidence 88888887654
No 119
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.47 E-value=0.003 Score=62.24 Aligned_cols=77 Identities=13% Similarity=0.225 Sum_probs=64.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..-.||.+.|.-+++.+.|-..|.+|=.-...++.++.+++.+ |||.||-|.+.+|+..|+.+||+....
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKS----------kgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKS----------KGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhcccccccccccc----------ccceeeeecCHHHHHHHHHhhcccccc
Confidence 3467999999999999999999999987777777777665433 689999999999999999999998877
Q ss_pred CCceEEE
Q 046325 310 RKGLRVR 316 (442)
Q Consensus 310 ~~glrV~ 316 (442)
-+.|+++
T Consensus 259 srpiklR 265 (290)
T KOG0226|consen 259 SRPIKLR 265 (290)
T ss_pred cchhHhh
Confidence 6655544
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.30 E-value=0.0039 Score=62.85 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=59.5
Q ss_pred ccceEE-cccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVV-AENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVy-V~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++| |.+|+.+++.++|+..|..+|.|..|+++....+.. .+++|||+|.+..++.+++.. .....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~----------~kg~a~~~~~~~~~~~~~~~~-~~~~~ 251 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGD----------SKGFAYVDFSAGNSKKLALND-QTRSI 251 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccc----------hhhhhhhhhhhchhHHHHhhc-ccCcc
Confidence 345666 999999999999999999999999999876554332 368999999999999998865 44444
Q ss_pred CCCceEEEE
Q 046325 309 WRKGLRVRV 317 (442)
Q Consensus 309 ~~~glrV~l 317 (442)
.+..+.+..
T Consensus 252 ~~~~~~~~~ 260 (285)
T KOG4210|consen 252 GGRPLRLEE 260 (285)
T ss_pred cCccccccc
Confidence 444444443
No 121
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.011 Score=63.92 Aligned_cols=78 Identities=28% Similarity=0.307 Sum_probs=59.9
Q ss_pred cceEEcccCCCC--CCH----HHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 231 SCTVVAENLPED--HSH----QNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 231 ~rTVyV~nLp~d--~T~----e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
...|+|.|+|-- ... .-|.++|+++|+|.++.++-+... +.+||+|+||++..+|++||+.||
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-----------gtkG~lf~E~~~~~~A~~aVK~l~ 126 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-----------GTKGYLFVEYASMRDAKKAVKSLN 126 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-----------CeeeEEEEEecChhhHHHHHHhcc
Confidence 467888998853 222 345688999999999988654332 247899999999999999999999
Q ss_pred CCcCCC-CceEEEEee
Q 046325 305 DERNWR-KGLRVRVLL 319 (442)
Q Consensus 305 ~~~~~~-~glrV~l~~ 319 (442)
|..+.. ..+.|++..
T Consensus 127 G~~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 127 GKRLDKNHTFFVRLFK 142 (698)
T ss_pred cceecccceEEeehhh
Confidence 998875 357777643
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.22 E-value=0.0095 Score=65.56 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=59.8
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCe-EEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSV-KTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V-~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
+.|-+.|+|++++.+||.+||..|-.+ -+|+|.+..+ +. ..|-|-|-|++.++|..|+..|++..+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~-G~----------pTGe~mvAfes~~eAr~A~~dl~~~~i~n 936 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD-GV----------PTGECMVAFESQEEARRASMDLDGQKIRN 936 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC-CC----------cccceeEeecCHHHHHhhhhccccCcccc
Confidence 367799999999999999999999654 4566554322 21 13688999999999999999999998887
Q ss_pred CceEEEE
Q 046325 311 KGLRVRV 317 (442)
Q Consensus 311 ~glrV~l 317 (442)
+-++++|
T Consensus 937 r~V~l~i 943 (944)
T KOG4307|consen 937 RVVSLRI 943 (944)
T ss_pred eeEEEEe
Confidence 7777765
No 123
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.07 E-value=0.016 Score=59.47 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=55.3
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCC--eEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGS--VKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~--V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
.-.+||+||-+.+|.++|.+.....|- +..+.+...+..+ ..||||+|...+..+.++-++.|--..+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NG----------QSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNG----------QSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCC----------cccceEEEEecchHHHHHHHHhccccee
Confidence 457999999999999999998877663 4444433322211 3579999999999999999988887777
Q ss_pred CCCceEE
Q 046325 309 WRKGLRV 315 (442)
Q Consensus 309 ~~~glrV 315 (442)
.++.-.|
T Consensus 150 HGQ~P~V 156 (498)
T KOG4849|consen 150 HGQSPTV 156 (498)
T ss_pred cCCCCee
Confidence 7654444
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.02 E-value=0.0028 Score=62.46 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=48.6
Q ss_pred HHHHHHHh-cCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEee
Q 046325 246 QNLEKIFG-VVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLL 319 (442)
Q Consensus 246 e~LkelFs-~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~~ 319 (442)
++|...|+ +||+|+.+.+|..... .+ .|-+||.|..+|+|++|+..||+--+.+++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~--------hl---~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGD--------HL---VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccch--------hh---hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44444445 8999999988874321 11 4789999999999999999999998888888777743
No 125
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.81 E-value=0.0062 Score=63.47 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=51.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
.++.|.++|||.++++++|-+++..||.|.++.+.+- |.-||+||.++++|..-+..+..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG----------------knQAflem~d~~sAvtmv~~y~~ 86 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG----------------KNQAFLEMADEESAVTMVNYYTS 86 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc----------------chhhhhhhcchhhhhheeecccc
Confidence 6889999999999999999999999999999998652 45899999999999885554443
No 126
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.77 E-value=0.026 Score=60.85 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCeEEEEEeCC-CCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCce
Q 046325 246 QNLEKIFGVVGSVKTIRICHP-PESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGL 313 (442)
Q Consensus 246 e~LkelFs~~G~V~~Vri~r~-~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~gl 313 (442)
|+|+.-++.||.|..|.|+++ .... .+..-|..||||.+.+++++|.++|.|..+.++.+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~--------~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDEN--------PVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCC--------cCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 344455678999999999988 3221 12345799999999999999999999998876543
No 127
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.54 E-value=0.032 Score=57.24 Aligned_cols=76 Identities=16% Similarity=0.285 Sum_probs=59.5
Q ss_pred cccceEEcccC--CCC--CC-------HHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHH
Q 046325 229 LQSCTVVAENL--PED--HS-------HQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAE 297 (442)
Q Consensus 229 ~~~rTVyV~nL--p~d--~T-------~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~ 297 (442)
...+||+++|+ |++ .+ .++|.+-..+||.|.+|.++..+ +.|.+-|.|.+.++|.
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h--------------PdGvvtV~f~n~eeA~ 328 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH--------------PDGVVTVSFRNNEEAD 328 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC--------------CCceeEEEeCChHHHH
Confidence 34689999998 322 22 45666778899999999987422 2479999999999999
Q ss_pred HHHHHhcCCcCCCCceEEEEe
Q 046325 298 KAVEKLNDERNWRKGLRVRVL 318 (442)
Q Consensus 298 kAv~~Ln~~~~~~~glrV~l~ 318 (442)
.||..|+|.-+.++.|...+-
T Consensus 329 ~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 329 QCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHhcCeeecceEEEEEEe
Confidence 999999999888777766654
No 128
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.30 E-value=0.014 Score=57.76 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=59.5
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCC------CCCcccccccCcccEEEEEeCCHHHHHHHHHHh
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESN------SSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL 303 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~------~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~L 303 (442)
..-.||+.++|+.....-|++||+.||.|-+|-|-...... .+..+...| --++|||.+...|..+...|
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y----~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLY----SEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccc----hhHHHHHHHHHHHHHHHHHh
Confidence 34679999999999999999999999999999986543320 011111111 13579999999999999999
Q ss_pred cCCcCCCC
Q 046325 304 NDERNWRK 311 (442)
Q Consensus 304 n~~~~~~~ 311 (442)
|+..++++
T Consensus 149 nn~~Iggk 156 (278)
T KOG3152|consen 149 NNTPIGGK 156 (278)
T ss_pred CCCccCCC
Confidence 99987753
No 129
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.28 E-value=0.065 Score=55.59 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=65.3
Q ss_pred ccceEEcccCCC-CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPE-DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~-d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
+.+.+.|.+|.. ...-+.|-.+|-.||.|.+|.+.+-. -|.|.||..+..+.++||..||+..+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk---------------~gtamVemgd~~aver~v~hLnn~~l 350 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK---------------PGTAMVEMGDAYAVERAVTHLNNIPL 350 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc---------------cceeEEEcCcHHHHHHHHHHhccCcc
Confidence 456788889975 45778999999999999999987632 26899999999999999999999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.+..|.|++.+..
T Consensus 351 fG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 351 FGGKLNVCVSKQN 363 (494)
T ss_pred ccceEEEeecccc
Confidence 9888888886543
No 130
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.05 E-value=0.15 Score=48.58 Aligned_cols=72 Identities=25% Similarity=0.286 Sum_probs=61.8
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
.-.|+|.+||...+.++|++..-+-|.|-...+-++ |+..|+|-..||.+-||..|+...+--
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----------------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----------------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----------------cceeeeeeehhhHHHHHHhhccccccC
Confidence 456999999999999999999999999988887553 578999999999999999999987766
Q ss_pred CceEEEEee
Q 046325 311 KGLRVRVLL 319 (442)
Q Consensus 311 ~glrV~l~~ 319 (442)
.|+.+.+-.
T Consensus 178 eGe~~yirv 186 (241)
T KOG0105|consen 178 EGETAYIRV 186 (241)
T ss_pred cCcEeeEEe
Confidence 676665544
No 131
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.89 E-value=0.079 Score=45.55 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=46.6
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEE-EeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIR-ICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vr-i~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..+.|.|=+||+. ....|.+.|++||.|.... +.+..... ..........+..|.|+++.+|.+|| .-|+..+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~----~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~ 78 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGI----NPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIF 78 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG--------------E-CCTTEEEEEESSHHHHHHHH-TTTTEEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccccccccc----ccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEE
Confidence 4677999999987 6688899999999997775 22211000 00001123468899999999999999 5677665
Q ss_pred CC
Q 046325 309 WR 310 (442)
Q Consensus 309 ~~ 310 (442)
.+
T Consensus 79 ~g 80 (100)
T PF05172_consen 79 SG 80 (100)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 132
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.75 E-value=0.066 Score=57.40 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=49.0
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeC-CCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICH-PPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r-~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
..-++.|||++||.+++++.|...|..||.+. |..++ .......-+||+ -||+|+-|+++.+...-+.+.-
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs-----~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGS-----YGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCc-----ccEEEEEecchHHHHHHHHHHh
Confidence 34578999999999999999999999999874 33332 111110102221 1499999999888877666443
No 133
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.37 E-value=0.16 Score=40.12 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=43.4
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcC---CCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHh
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVV---GSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL 303 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~---G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~L 303 (442)
.-.|+|.|+. +.+.++|+.+|..| .....|....+ -.|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-----------------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-----------------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-----------------CcEEEEECCHHHHHHHHHcC
Confidence 4579999986 47889999999998 23556776543 26889999999999999765
No 134
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.16 E-value=0.12 Score=47.31 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=51.8
Q ss_pred ccceEEcccCC----C--CCC---HHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHH
Q 046325 230 QSCTVVAENLP----E--DHS---HQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAV 300 (442)
Q Consensus 230 ~~rTVyV~nLp----~--d~T---~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv 300 (442)
...||+|.-+. + ... ..+|.+.|..||+|.-||+... .-+|+|.+-++|.+|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~------------------~mwVTF~dg~sALaal 87 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD------------------TMWVTFRDGQSALAAL 87 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT------------------CEEEEESSCHHHHHHH
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC------------------eEEEEECccHHHHHHH
Confidence 45677766554 1 122 3477888999999999998652 4579999999999999
Q ss_pred HHhcCCcCCCCceEEEEeec
Q 046325 301 EKLNDERNWRKGLRVRVLLR 320 (442)
Q Consensus 301 ~~Ln~~~~~~~glrV~l~~~ 320 (442)
.|++.+..++.|+|++..+
T Consensus 88 -s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 88 -SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp -HGCCSEETTEEEEEEE---
T ss_pred -ccCCcEECCEEEEEEeCCc
Confidence 7999999988888888554
No 135
>PF12901 SUZ-C: SUZ-C motif; InterPro: IPR024642 The SUZ-C domain is a conserved motif found in one or more copies in several RNA-binding proteins []. It is always found at the C terminus of the protein and appears to be required for localization of the protein to specific subcellular structures. The domain was first characterised in the C.elegans protein SZY-20 which localizes to the centrosome. This domain is widely distributed in eukaryotes.
Probab=93.55 E-value=0.032 Score=38.90 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.4
Q ss_pred CCCCCCCCCccccccccc
Q 046325 414 TFKGPRMPDVTQIMALHF 431 (442)
Q Consensus 414 ~~~gpRmPdgtrgf~~gR 431 (442)
...+||.||||+||.+-|
T Consensus 17 vir~P~gPd~~~gf~~~R 34 (34)
T PF12901_consen 17 VIRQPRGPDGTWGFQQRR 34 (34)
T ss_pred ceecCCCCCCCccccccC
Confidence 357799999999999876
No 136
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.17 Score=54.28 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=52.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHh-cCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHH
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFG-VVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 301 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs-~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~ 301 (442)
..+||||++||--++-++|-.+|. .||-|..|-|-.|. .-+. .||-+=|+|.+..+-.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~--k~KY--------PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP--KLKY--------PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc--ccCC--------CCCcceeeecccHHHHHHHh
Confidence 469999999999999999999999 69999999995442 2222 35788999999999999996
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.43 E-value=0.3 Score=44.84 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=51.9
Q ss_pred hccccceEEcccCCCCC----CHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHH
Q 046325 227 EELQSCTVVAENLPEDH----SHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEK 302 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~----T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~ 302 (442)
.+..-.||+|.-|..+. ....|...++.||+|.+|.+|-. -.|.|.|.+..+|=+|+.+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----------------qsavVvF~d~~SAC~Av~A 144 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----------------QSAVVVFKDITSACKAVSA 144 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----------------ceEEEEehhhHHHHHHHHh
Confidence 34566889998776654 33444455788999999998752 3799999999999999988
Q ss_pred hcCCcCCCCceEEEE
Q 046325 303 LNDERNWRKGLRVRV 317 (442)
Q Consensus 303 Ln~~~~~~~glrV~l 317 (442)
+.. ..-+.-+++..
T Consensus 145 f~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 145 FQS-RAPGTMFQCSW 158 (166)
T ss_pred hcC-CCCCceEEeec
Confidence 875 33333344433
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.23 E-value=0.11 Score=58.80 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=64.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..+-++|++|+..+....|...|..||.|..|.+.+- .-||||.|++...|+.|+..|.+..+.
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg----------------q~yayi~yes~~~aq~a~~~~rgap~G 517 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG----------------QPYAYIQYESPPAAQAATHDMRGAPLG 517 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecccC----------------CcceeeecccCccchhhHHHHhcCcCC
Confidence 3566899999999999999999999999999987542 249999999999999999999999887
Q ss_pred C--CceEEEEeecC
Q 046325 310 R--KGLRVRVLLRC 321 (442)
Q Consensus 310 ~--~glrV~l~~~~ 321 (442)
+ +.++|.++...
T Consensus 518 ~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 518 GPPRRLRVDLASPP 531 (975)
T ss_pred CCCcccccccccCC
Confidence 5 45888887653
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.95 E-value=0.06 Score=60.65 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=64.5
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
...|+|.|.|...|.+.|+.+|+.+|.++.++++.... +..||-|||.|.++.+|.+++...+...+..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-----------gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-----------GKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-----------cccccceeccCCCcchhhhhcccchhhhhhh
Confidence 56799999999999999999999999999998654322 1246899999999999999998777655555
Q ss_pred CceEEEEeecC
Q 046325 311 KGLRVRVLLRC 321 (442)
Q Consensus 311 ~glrV~l~~~~ 321 (442)
+.+.|.+..+.
T Consensus 805 ~~~~v~vsnp~ 815 (881)
T KOG0128|consen 805 NNGEVQVSNPE 815 (881)
T ss_pred cCccccccCCc
Confidence 66777776653
No 140
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=92.57 E-value=3 Score=43.68 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=58.2
Q ss_pred cceEEcccC--CCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 231 SCTVVAENL--PEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 231 ~rTVyV~nL--p~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...|++.-| -+.+|.+-|..+...+|.|.+|-|.+.. -.-|.|||++.+.|++|-+.||+..+
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn---------------gVQAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN---------------GVQAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc---------------ceeeEEeechhHHHHHHHhhcccccc
Confidence 344444433 4568899999999999999999986631 13799999999999999999999887
Q ss_pred CCC--ceEEEEeec
Q 046325 309 WRK--GLRVRVLLR 320 (442)
Q Consensus 309 ~~~--glrV~l~~~ 320 (442)
+-. .|+|+.+++
T Consensus 185 YsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 185 YSGCCTLKIEYAKP 198 (494)
T ss_pred cccceeEEEEecCc
Confidence 653 467776654
No 141
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.03 E-value=0.049 Score=61.65 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=66.3
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
....+|||++||+..+++.+|+-.|..+|.|..|.|-.+..... .-|+||-|.+.+.+-+|..++.+..
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~e-----------sa~~f~~~~n~dmtp~ak~e~s~~~ 437 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTE-----------SAYAFVSLLNTDMTPSAKFEESGPL 437 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcc-----------cchhhhhhhccccCcccchhhcCCc
Confidence 35679999999999999999999999999999999977643221 2489999999999999999998877
Q ss_pred CCCCceEEEEe
Q 046325 308 NWRKGLRVRVL 318 (442)
Q Consensus 308 ~~~~glrV~l~ 318 (442)
+....+++.+-
T Consensus 438 I~~g~~r~glG 448 (975)
T KOG0112|consen 438 IGNGTHRIGLG 448 (975)
T ss_pred cccCccccccc
Confidence 66655665554
No 142
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=91.98 E-value=0.12 Score=59.35 Aligned_cols=53 Identities=28% Similarity=0.492 Sum_probs=47.2
Q ss_pred hcCCCCCceecccccchhHHHhhccChHHHHHHhh-cCCceEEecCCccccccC
Q 046325 167 VNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALR-SSSKLIVSNDGKKVRRKH 219 (442)
Q Consensus 167 m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~-~S~~LeVseDg~kVRRk~ 219 (442)
+..|.+|||-|.+||++-.+--|..+.+.|..||. .|.+|+|+.||.|||=+-
T Consensus 471 v~pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWRG 524 (989)
T PF09421_consen 471 VHPDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWRG 524 (989)
T ss_pred cCcccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeecC
Confidence 34488999999999999999999999999999995 688999999999998543
No 143
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.93 E-value=0.072 Score=54.47 Aligned_cols=84 Identities=20% Similarity=0.335 Sum_probs=59.9
Q ss_pred cccceEEcccCCCCCCHHHH-H--HHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 229 LQSCTVVAENLPEDHSHQNL-E--KIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~L-k--elFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
++..-|||-+|+.+.-.+.+ + +.|.+||.|..|.+.+... ..+. . ..--.+||+|+..|+|..||...++
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S-~~s~-~-----~~~~s~yITy~~~eda~rci~~v~g 147 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS-SSSS-S-----GGTCSVYITYEEEEDADRCIDDVDG 147 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcc-cccC-C-----CCCCcccccccchHhhhhHHHHhhh
Confidence 45667899999877654444 3 7899999999999876542 1111 1 1123699999999999999999998
Q ss_pred CcCCCCceEEEEee
Q 046325 306 ERNWRKGLRVRVLL 319 (442)
Q Consensus 306 ~~~~~~glrV~l~~ 319 (442)
..+.++-++..+..
T Consensus 148 ~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 148 FVDDGRALKASLGT 161 (327)
T ss_pred HHhhhhhhHHhhCC
Confidence 88777665555533
No 144
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.56 E-value=0.52 Score=49.27 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=44.1
Q ss_pred cceEEcccCCCCCCHHHHHHHHhc-----CCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGV-----VGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~-----~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
.-.|-.++||++++..++.+||.. -|...-+-+.++.. | ..|-|||-|..+++|+.|+..-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdg----r--------pTGdAFvlfa~ee~aq~aL~khr 227 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDG----R--------PTGDAFVLFACEEDAQFALRKHR 227 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCC----C--------cccceEEEecCHHHHHHHHHHHH
Confidence 456778999999999999999973 23332333333321 1 13689999999999999997433
No 145
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.55 E-value=0.13 Score=58.10 Aligned_cols=71 Identities=23% Similarity=0.184 Sum_probs=58.7
Q ss_pred EEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCce
Q 046325 234 VVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGL 313 (442)
Q Consensus 234 VyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~gl 313 (442)
.++.|.+-..+-..|..+|+.||.|+.++++++- .+|.|+|.+.+.|..|+++|.+......|+
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----------------N~alvs~~s~~sai~a~dAl~gkevs~~g~ 364 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----------------NMALVSFSSVESAILALDALQGKEVSVTGA 364 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc----------------cchhhhhHHHHHHHHhhhhhcCCcccccCC
Confidence 4566667778889999999999999999998753 489999999999999999999988776665
Q ss_pred EEEEeec
Q 046325 314 RVRVLLR 320 (442)
Q Consensus 314 rV~l~~~ 320 (442)
.+++...
T Consensus 365 Ps~V~~a 371 (1007)
T KOG4574|consen 365 PSRVSFA 371 (1007)
T ss_pred ceeEEec
Confidence 5555443
No 146
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.24 E-value=0.022 Score=64.04 Aligned_cols=67 Identities=22% Similarity=0.303 Sum_probs=54.4
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
.+.+++||.||+..+.+++|...|..+|.|..|+|.- ..+..+ .+|.|||+|..+++|.+||...+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~--h~n~~~--------~rG~~Y~~F~~~~~~~aaV~f~d~ 731 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVI--HKNEKR--------FRGKAYVEFLKPEHAGAAVAFRDS 731 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHH--Hhhccc--------cccceeeEeecCCchhhhhhhhhh
Confidence 3457899999999999999999999999999998862 222233 357999999999999999964443
No 147
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.09 E-value=0.55 Score=47.60 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEe
Q 046325 245 HQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVL 318 (442)
Q Consensus 245 ~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~ 318 (442)
++++++-..+||.|.+|-|.......--+ -.-.||||+..++|.+|+-.||+..++++-++.++-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~de---------avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDE---------AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccch---------hheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 56788889999999998876542111000 124699999999999999999999988776666653
No 148
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.03 E-value=0.11 Score=56.72 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=53.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHh-cCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFG-VVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs-~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
.+..|||.||-.-+|.-+|++++. .+|.|....|-+ + |-+|||.|.+.++|..-..+|++..
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk--------I--------KShCyV~yss~eEA~atr~AlhnV~- 505 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK--------I--------KSHCYVSYSSVEEAAATREALHNVQ- 505 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHH--------h--------hcceeEecccHHHHHHHHHHHhccc-
Confidence 467899999999999999999999 577787776632 1 4599999999999999999999854
Q ss_pred CC
Q 046325 309 WR 310 (442)
Q Consensus 309 ~~ 310 (442)
|.
T Consensus 506 WP 507 (718)
T KOG2416|consen 506 WP 507 (718)
T ss_pred cC
Confidence 53
No 149
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=89.93 E-value=0.33 Score=50.74 Aligned_cols=65 Identities=12% Similarity=0.239 Sum_probs=50.3
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCC-eEE--EEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGS-VKT--IRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~-V~~--Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
..+|-+++||+..+.++|..||+.|-. |.. |-|.....-. ..|-|||+|.+.|+|..|...-...
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGr-----------PSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGR-----------PSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCC-----------cChhhhhhhhhhHHHHHHHHHHHHh
Confidence 567999999999999999999999874 444 6665543321 2478999999999999888765543
No 150
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.33 E-value=1.2 Score=37.32 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=40.4
Q ss_pred EEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 234 VVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 234 VyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
||--.||..-...||.++|+.||.|. |..+.+ ..|||.....+.|..|+..++-
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d-----------------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND-----------------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE-EEEECT-----------------TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC-----------------CcEEEEeecHHHHHHHHHHhcc
Confidence 45445999999999999999999985 443332 4899999999999999988874
No 151
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=89.23 E-value=0.33 Score=50.13 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHhcce
Q 046325 134 NVLTDDLRAKIIKQVE 149 (442)
Q Consensus 134 ~~~~~~~~~~I~kQvE 149 (442)
.++++...++|-+|.|
T Consensus 193 kpl~~a~w~~iE~~~~ 208 (465)
T KOG3973|consen 193 KPLDEATWPEIEKQCE 208 (465)
T ss_pred CcCChhhHHHHHHHHH
Confidence 3567777888887775
No 152
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=87.25 E-value=0.68 Score=46.10 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=54.3
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..|||.||..-++.+.|..-|+.||.|...-++-+..-..+ +-.+|+|...-.|.+|+...+..-+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t-----------~eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPT-----------REGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccccc-----------ccchhhhhcchhHHHHHHHhccCccc
Confidence 78999999999999999999999999987776655432222 35689999999999999988755443
No 153
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.24 E-value=6.3 Score=44.10 Aligned_cols=62 Identities=11% Similarity=0.252 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHhcCCCe-----EEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEE
Q 046325 241 EDHSHQNLEKIFGVVGSV-----KTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRV 315 (442)
Q Consensus 241 ~d~T~e~LkelFs~~G~V-----~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV 315 (442)
..++..+|-.+...-+.| -.|+|. ..|.|||... +.|...+..|+.....++.+.|
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~------------------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF------------------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe------------------CCceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 346677777776655443 334442 3588999976 4588999999988888888888
Q ss_pred EEeecC
Q 046325 316 RVLLRC 321 (442)
Q Consensus 316 ~l~~~~ 321 (442)
.++...
T Consensus 558 ~~~~~~ 563 (629)
T PRK11634 558 QLLGDA 563 (629)
T ss_pred EECCCC
Confidence 887533
No 154
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.23 E-value=6.8 Score=34.25 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=46.6
Q ss_pred eEEcccCCCCCCHHHHHHHHhcC-CCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVV-GSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~-G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
.+.+-..|.-++.+.|..+.+.+ ..|..+||+++... ++--+++.|.+.++|..-...+||..+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p------------nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP------------NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC------------ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444445555666776555554 46889999886542 1237899999999999999999998764
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=84.09 E-value=1.2 Score=46.67 Aligned_cols=78 Identities=14% Similarity=0.258 Sum_probs=56.4
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRK 311 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~ 311 (442)
..|-|.||...+|.++++.||+-.|+|..++|.-.-+..+ -++ ..-.|||-|.+...+.-|- .|.+..+-+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~----~pv---~sRtcyVkf~d~~sv~vaQ-hLtntvfvdr 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSK----IPV---ISRTCYVKFLDSQSVTVAQ-HLTNTVFVDR 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCcc----Ccc---eeeeEEEeccCCcceeHHh-hhccceeeee
Confidence 4788999999999999999999999999999743222111 111 1248999999988887776 6666666555
Q ss_pred ceEEEE
Q 046325 312 GLRVRV 317 (442)
Q Consensus 312 glrV~l 317 (442)
-|-|..
T Consensus 80 aliv~p 85 (479)
T KOG4676|consen 80 ALIVRP 85 (479)
T ss_pred eEEEEe
Confidence 555444
No 156
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=82.57 E-value=0.73 Score=51.41 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=54.3
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEE-EEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKT-IRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~-Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
.-.|||..||..+++.++.++|+..-.|+. |.|.+-.. .. ..+.|||+|..++++.+|...-.-....
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~-~~----------~~~~afv~F~~~~a~~~a~~~~~k~y~G 502 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT-DL----------LRPAAFVAFIHPTAPLTASSVKTKFYPG 502 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc-cc----------ccchhhheeccccccchhhhcccccccC
Confidence 467999999999999999999998777665 76644211 10 1368999999988888887543333333
Q ss_pred CCceEEEEe
Q 046325 310 RKGLRVRVL 318 (442)
Q Consensus 310 ~~glrV~l~ 318 (442)
-+-|+|+-+
T Consensus 503 ~r~irv~si 511 (944)
T KOG4307|consen 503 HRIIRVDSI 511 (944)
T ss_pred ceEEEeech
Confidence 355777653
No 157
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=80.03 E-value=1.2 Score=47.65 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=59.8
Q ss_pred cccceEEcccCCCCC-CHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 229 LQSCTVVAENLPEDH-SHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~-T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
.+.+++-++-.|... +.++|...|.+||+|..|.+..+ -.+|.|+|.+..+|-+|. ...+..
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----------------~~~a~vTF~t~aeag~a~-~s~~av 432 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----------------SLHAVVTFKTRAEAGEAY-ASHGAV 432 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc----------------hhhheeeeeccccccchh-ccccce
Confidence 356777777766554 78999999999999999998553 147999999999998888 455666
Q ss_pred CCCCceEEEEeecCC
Q 046325 308 NWRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~~~~glrV~l~~~~~ 322 (442)
+..+-|+|...+.-.
T Consensus 433 lnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 433 LNNRFIKLFWHNPSP 447 (526)
T ss_pred ecCceeEEEEecCCc
Confidence 777788888877633
No 158
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=79.74 E-value=1.8 Score=40.70 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=45.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhc-CCCe---EEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGV-VGSV---KTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~-~G~V---~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
....|+|++||...|++++.+.++. ++.- ..+.-..+... ++... ---|||.|.+.+++...+..+++
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~----~~~~~----~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKS----FKPPT----YSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SS----STTS------EEEEEEESSCHHHHHHHHHCTT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCcc----CCCCc----ceEEEEEeCCHHHHHHHHHhcCC
Confidence 4567999999999999999997776 6655 44442222211 11111 13699999999999999999988
Q ss_pred CcC
Q 046325 306 ERN 308 (442)
Q Consensus 306 ~~~ 308 (442)
..+
T Consensus 78 ~~F 80 (176)
T PF03467_consen 78 HVF 80 (176)
T ss_dssp EEE
T ss_pred cEE
Confidence 554
No 159
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.02 E-value=5 Score=38.17 Aligned_cols=61 Identities=21% Similarity=0.158 Sum_probs=42.8
Q ss_pred CHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc--CCcCCCCceEEEEeec
Q 046325 244 SHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN--DERNWRKGLRVRVLLR 320 (442)
Q Consensus 244 T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln--~~~~~~~glrV~l~~~ 320 (442)
..+.|+++|..|+.+..+..++. + .=..|.|.+.++|.+|...|+ +..+.+..++|.+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-------F---------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-------F---------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-------T---------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-------C---------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 46889999999999888776542 1 246799999999999999998 7777777788887743
No 160
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.02 E-value=7 Score=40.00 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=53.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
....|-|-+||... ...|..+|++||.|....... ++ .+-+|.|.+.-+|.||| ..|+..+.
T Consensus 196 ~D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~---------ng-------NwMhirYssr~~A~KAL-skng~ii~ 257 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS---------NG-------NWMHIRYSSRTHAQKAL-SKNGTIID 257 (350)
T ss_pred ccceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC---------CC-------ceEEEEecchhHHHHhh-hhcCeeec
Confidence 35678888998753 457888999999998876542 12 36789999999999999 45665554
Q ss_pred CCceEEEEeecCCCcccc
Q 046325 310 RKGLRVRVLLRCSPKSVL 327 (442)
Q Consensus 310 ~~glrV~l~~~~~~k~~~ 327 (442)
+. +-|- .++|.++...
T Consensus 258 g~-vmiG-VkpCtDksvi 273 (350)
T KOG4285|consen 258 GD-VMIG-VKPCTDKSVI 273 (350)
T ss_pred cc-eEEe-eeecCCHHHh
Confidence 32 2222 3556666544
No 161
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=75.68 E-value=3.5 Score=43.89 Aligned_cols=69 Identities=25% Similarity=0.278 Sum_probs=50.3
Q ss_pred eEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc-CCCC
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER-NWRK 311 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~-~~~~ 311 (442)
.+|++||.+..+..+|+.+|...- +.. .+. |+-..|||||.+.+..-|.+|++.|++.. +.+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak------~~~---------~g~-fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGk 66 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAK------IPG---------SGQ-FLVKSGYAFVDCPDQQWANKAIETLSGKVELQGK 66 (584)
T ss_pred cccccccCCCCChHHHHHHhcccc------CCC---------Ccc-eeeecceeeccCCchhhhhhhHHhhchhhhhcCc
Confidence 479999999999999999998641 100 011 22235899999999999999999999864 3444
Q ss_pred ceEEEE
Q 046325 312 GLRVRV 317 (442)
Q Consensus 312 glrV~l 317 (442)
.+.|.-
T Consensus 67 r~e~~~ 72 (584)
T KOG2193|consen 67 RQEVEH 72 (584)
T ss_pred eeeccc
Confidence 455544
No 162
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=72.73 E-value=7.8 Score=41.55 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=57.5
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVG-SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G-~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
+.+|.|-.+|..+|..||..|...+- .|..|+|+|+... +.-.++|.|.+.++|......+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p------------nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP------------NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC------------ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 78899999999999999999987754 6899999986542 2347899999999999999999998765
Q ss_pred C
Q 046325 310 R 310 (442)
Q Consensus 310 ~ 310 (442)
.
T Consensus 142 ~ 142 (493)
T KOG0804|consen 142 S 142 (493)
T ss_pred C
Confidence 3
No 163
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=72.43 E-value=3.7 Score=39.01 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=33.9
Q ss_pred CCCCCceecccccchhHHHhhccChHHHHHHhhcCCc--eEEe---cCCccccccC
Q 046325 169 KDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSK--LIVS---NDGKKVRRKH 219 (442)
Q Consensus 169 ~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~--LeVs---eDg~kVRRk~ 219 (442)
-|++|||+|.-|+...+++....+.+.|.+++..+.+ .++. .++..||-.+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 3889999999999999998777778999999987664 5666 5677888764
No 164
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=70.86 E-value=20 Score=28.57 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHhcCC-----CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEE
Q 046325 242 DHSHQNLEKIFGVVG-----SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVR 316 (442)
Q Consensus 242 d~T~e~LkelFs~~G-----~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~ 316 (442)
.++..+|..++...+ .|-.|+|.. .|+||+-... .|.+++..|++....++.++|+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~------------------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD------------------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S------------------S-EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee------------------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 456777888877654 466777743 4899999874 6899999999999998888888
Q ss_pred Ee
Q 046325 317 VL 318 (442)
Q Consensus 317 l~ 318 (442)
+|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 64
No 165
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=66.74 E-value=9.3 Score=39.83 Aligned_cols=8 Identities=13% Similarity=0.567 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 046325 246 QNLEKIFG 253 (442)
Q Consensus 246 e~LkelFs 253 (442)
++|..+|+
T Consensus 243 ~ei~~~~~ 250 (465)
T KOG3973|consen 243 EEIQSILS 250 (465)
T ss_pred HHHHHHHH
Confidence 34555554
No 166
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.47 E-value=21 Score=39.55 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=63.2
Q ss_pred cccceEEcccCCCC-CCHHHHHHHHhcC----CCeEEEEEeCCCCCCCCC-----cccc-----------------c---
Q 046325 229 LQSCTVVAENLPED-HSHQNLEKIFGVV----GSVKTIRICHPPESNSSR-----AKSD-----------------F--- 278 (442)
Q Consensus 229 ~~~rTVyV~nLp~d-~T~e~LkelFs~~----G~V~~Vri~r~~~~~~sr-----~Kg~-----------------~--- 278 (442)
...+.|-|-|+.++ +...+|.-+|+.| |.|.+|.|+.-. -+..| ..|. +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-FGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-FGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-hhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 34677999999987 5788999999876 589999987421 11111 0010 0
Q ss_pred ------------ccC-cccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEe
Q 046325 279 ------------FVS-NKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVL 318 (442)
Q Consensus 279 ------------~~~-~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~ 318 (442)
+.. .--||.|+|++.+.|.+.+...+|..+...++.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 000 0138999999999999999999999988888777763
No 167
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=57.37 E-value=32 Score=27.43 Aligned_cols=50 Identities=10% Similarity=0.081 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 242 DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 242 d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
.++.++|+..+..|+- ..|+. +. ---||.|.+..+|+++....++..+..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~----------------tGfYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR----------------TGFYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC----------------CEEEEEECChHHHHHHHHhcCCCEEEE
Confidence 4688999999999974 33433 22 124899999999999999888766543
No 168
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=57.28 E-value=3.9 Score=38.19 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=34.1
Q ss_pred CCCCcCCCCCCCCCCC-----CCCCCCccccCCCCCCCCCceeccCC------CCceeecCCCCC
Q 046325 73 QAPEFVPRSHTQMPIS-----GYYYPCFQYIGGTATGSADWIFVGDQ------EPVYVISSPSVA 126 (442)
Q Consensus 73 ~apefvpr~~~~~p~~-----~~~~p~~~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~ 126 (442)
--|.|.|.+...++.- +||++.+| +-++|-++|.. -..+|.||.+.+
T Consensus 19 dEP~YlPa~~~~~~~rI~Fahgf~aSALH-------EIaHWciAG~~RR~l~DfGYWY~PDGR~~ 76 (164)
T PF04315_consen 19 DEPIYLPADDECPYHRIIFAHGFFASALH-------EIAHWCIAGPERRQLEDFGYWYCPDGRDA 76 (164)
T ss_pred CCccccCCCCCCCceeEEeecchHHHHHH-------HHHHHHhccccccccccCCCCcCCCCCCH
Confidence 3499999887755543 78988888 56789888772 334688888744
No 169
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=56.83 E-value=8 Score=36.71 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=37.5
Q ss_pred CCCCceecccccchhHHHhhccChHHHHHHhhcCCc----eEEecCCcccccc
Q 046325 170 DPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSK----LIVSNDGKKVRRK 218 (442)
Q Consensus 170 d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~----LeVseDg~kVRRk 218 (442)
+.|||||+..+++.++.+-+.-.+++|..+++.-.+ |..-+++..||..
T Consensus 30 ~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndKqRF~l~d~~~el~IrAn 82 (207)
T KOG2278|consen 30 RGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDKQRFSLIDEAGELLIRAN 82 (207)
T ss_pred cCCCceEHHHHhccchhcccCCcHHHHHHHHhccccceEEeecCCCcEEEEec
Confidence 789999999999999999998889999999975543 3322344455554
No 170
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=56.28 E-value=7.8 Score=39.25 Aligned_cols=83 Identities=14% Similarity=0.017 Sum_probs=59.9
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++.|++++.+.+.+.++..+|..+|.+...++..-.. .+..+++++|.|...+.+..|+...-...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~----------~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~ 156 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED----------SLSSKGGLSVHFAGKSQFFAALEESGSKVLD 156 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhcc----------ccccccceeeccccHHHHHHHHHhhhccccc
Confidence 468999999999999999999999999776666543222 1245789999999999999999654434555
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
...+...+...+.
T Consensus 157 ~~~~~~dl~~~~~ 169 (285)
T KOG4210|consen 157 GNKGEKDLNTRRG 169 (285)
T ss_pred cccccCccccccc
Confidence 5555555544433
No 171
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=55.96 E-value=22 Score=39.11 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=25.2
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 281 SNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 281 ~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
++.|||||.|-+.+++..+.+++|+.. |.
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~-W~ 457 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKK-WE 457 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCc-hh
Confidence 456999999999999999999999864 54
No 172
>PTZ00146 fibrillarin; Provisional
Probab=54.18 E-value=26 Score=35.85 Aligned_cols=7 Identities=14% Similarity=-0.150 Sum_probs=3.0
Q ss_pred cccccCc
Q 046325 427 MALHFLK 433 (442)
Q Consensus 427 f~~gRgk 433 (442)
.-+=|||
T Consensus 67 v~~~~~~ 73 (293)
T PTZ00146 67 VFIAKGK 73 (293)
T ss_pred EEEeecC
Confidence 3344444
No 173
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=53.57 E-value=11 Score=35.62 Aligned_cols=48 Identities=23% Similarity=0.350 Sum_probs=35.5
Q ss_pred CCCCceecccccchhHHHhhccChHHHHHHhhcCCc--eEEecCCccccccC
Q 046325 170 DPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSK--LIVSNDGKKVRRKH 219 (442)
Q Consensus 170 d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~--LeVseDg~kVRRk~ 219 (442)
|++|||+|..++...+.+....+.+.|.+.+....+ .+++ +.+||-.+
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~q 78 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRARQ 78 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEecc
Confidence 899999999999876644333467888888887765 5565 56787664
No 174
>PTZ00315 2'-phosphotransferase; Provisional
Probab=53.21 E-value=17 Score=40.50 Aligned_cols=74 Identities=22% Similarity=0.269 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHhcceeeccCCCCChhHHHHhh------hcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCc--
Q 046325 134 NVLTDDLRAKIIKQVEYQFSDMSLLANETLSKH------VNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSK-- 205 (442)
Q Consensus 134 ~~~~~~~~~~I~kQvEyYFSd~NL~~D~fL~~~------m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~-- 205 (442)
.++.+....+|-|-|.| |+.+ +.-|++|||.|..|+.-.+.+....+.+.|.++++++.+
T Consensus 371 ~~l~~~~~~~lSK~LS~------------lLRH~pe~~GL~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~R 438 (582)
T PTZ00315 371 RVFDEEKLVTYSKFMSR------------LLRHKADQWRVPITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQR 438 (582)
T ss_pred hhhccchHHHHHHHHHH------------HHcCCHhhcCCCcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCc
Confidence 34455555666666644 3332 334889999999999887777655578899999987765
Q ss_pred eEEe---cCC-ccccccC
Q 046325 206 LIVS---NDG-KKVRRKH 219 (442)
Q Consensus 206 LeVs---eDg-~kVRRk~ 219 (442)
.+++ +++ .+||-.+
T Consensus 439 F~l~~~~~~~~~~IRA~Q 456 (582)
T PTZ00315 439 FKLAYGAADGRLYIRANQ 456 (582)
T ss_pred eEEeccCCCCceEEEecc
Confidence 6676 345 3677654
No 175
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=51.48 E-value=28 Score=33.36 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=11.2
Q ss_pred ccCCCCCCCCCCcccc
Q 046325 411 AKQTFKGPRMPDVTQI 426 (442)
Q Consensus 411 ~~~~~~gpRmPdgtrg 426 (442)
+.++|.-|||..|.-|
T Consensus 100 ppqqpqpprmqtgrgg 115 (300)
T PF05750_consen 100 PPQQPQPPRMQTGRGG 115 (300)
T ss_pred CcCCCCCcccccCCCC
Confidence 3566777999887543
No 176
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=50.66 E-value=12 Score=41.92 Aligned_cols=69 Identities=17% Similarity=0.036 Sum_probs=57.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..-||||+|+-..+..+=++.+...||.|.+.... -|+|.+|....-+..|+..|+.-...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------------------~fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------------------KFGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------------------hhcccchhhHHHHHHHHHHhcccCCC
Confidence 56799999999999999999999999988665432 28899999999999999988877776
Q ss_pred CCceEEEE
Q 046325 310 RKGLRVRV 317 (442)
Q Consensus 310 ~~glrV~l 317 (442)
++++-+..
T Consensus 100 ~~kl~~~~ 107 (668)
T KOG2253|consen 100 DQKLIENV 107 (668)
T ss_pred cchhhccc
Confidence 77766665
No 177
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=47.28 E-value=5.2 Score=42.21 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=53.4
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
.+||+|.+|+.++...++.++|..+|.|...++..-. .+.+|-|+|....+...|+...+ ..+..
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~--------------~s~~c~~sf~~qts~~halr~~g-re~k~ 215 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKS--------------RSSSCSHSFRKQTSSKHALRSHG-RERKR 215 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC--------------CCcchhhhHhhhhhHHHHHHhcc-hhhhh
Confidence 3999999999999999999999999999888764321 12456699998888888885444 33333
Q ss_pred CceEEEEee
Q 046325 311 KGLRVRVLL 319 (442)
Q Consensus 311 ~glrV~l~~ 319 (442)
+-.++.+..
T Consensus 216 qhsr~ai~k 224 (479)
T KOG4676|consen 216 QHSRRAIIK 224 (479)
T ss_pred hhhhhhhcC
Confidence 334444433
No 178
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=40.44 E-value=44 Score=29.43 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=25.9
Q ss_pred ceEEcccCCCC---------CCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHH
Q 046325 232 CTVVAENLPED---------HSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTD 294 (442)
Q Consensus 232 rTVyV~nLp~d---------~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~e 294 (442)
-+++|-|++.. .+.+.|++.|..|..++ |+.+.... +..++|+|+|...-
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~------------gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ------------GHTGFAIVEFNKDW 67 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT------------EEEEEEEEE--SSH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC------------CCcEEEEEEECCCh
Confidence 36777777543 36689999999999886 44443221 24589999999744
No 179
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=37.03 E-value=27 Score=29.50 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=35.6
Q ss_pred ChHHHHHHhhcCCceEEecCCcccc-ccCCCCchh------hhccccceEEcccCCCCCCHHHHHHHH
Q 046325 192 NNHLLAQALRSSSKLIVSNDGKKVR-RKHPFTDKE------REELQSCTVVAENLPEDHSHQNLEKIF 252 (442)
Q Consensus 192 d~~~I~~AL~~S~~LeVseDg~kVR-Rk~Pl~e~~------~~~~~~rTVyV~nLp~d~T~e~LkelF 252 (442)
+.+.+++-|-.-..-.|.-++..++ +..|+.... ...+..+||.|.|||....+++|++..
T Consensus 6 ~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 6 EEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 4455666555444433333333332 223332211 235678999999999999999998654
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=36.00 E-value=88 Score=33.71 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=11.4
Q ss_pred HHHHhcCCCeEEEEEeCCCC
Q 046325 249 EKIFGVVGSVKTIRICHPPE 268 (442)
Q Consensus 249 kelFs~~G~V~~Vri~r~~~ 268 (442)
+.|-+-||.+-.|..++.-.
T Consensus 246 enl~kiFg~~G~IksIRIck 265 (484)
T KOG1855|consen 246 ENLSKIFGTVGSIKSIRICK 265 (484)
T ss_pred HHHHHHhhcccceeeeeecC
Confidence 34444566666666666443
No 181
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=34.67 E-value=40 Score=36.46 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=55.5
Q ss_pred HHHHHHHHh--cceeeccCCCCChhHHHHhhhcCCCCC-ceecccccchhHHHhhccChHHHHHHhhcCCc
Q 046325 138 DDLRAKIIK--QVEYQFSDMSLLANETLSKHVNKDPEG-FVPLSVIGSMKKIKSLVGNNHLLAQALRSSSK 205 (442)
Q Consensus 138 ~~~~~~I~k--QvEyYFSd~NL~~D~fL~~~m~~d~eG-~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~ 205 (442)
..+.+.+.. +++|||+-.++.+|.|+...+.....| +.+++.+.+|.++..+.+++-.++.++..|..
T Consensus 95 ~~l~e~~~~~k~~s~~~~~~~~~~~~~~~~k~~~t~~~~~~~~S~~~~s~~~~~~s~n~~~~~~~~~~sa~ 165 (448)
T KOG2590|consen 95 PPLKEYSKSDKKKSWPASKPFTPRDSFKGSKPTNTGNGTFLPISKISSSGPVSGGSANNSNIRGPLKGSAS 165 (448)
T ss_pred ccccccccccccccCcccCCCCccccccCCCccccCCCccCCCccccccccccCcccccccccCcCCCCCc
Confidence 345555554 999999999999999999999443222 78999999999999999998888888877443
No 182
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=34.12 E-value=1.2e+02 Score=35.90 Aligned_cols=10 Identities=0% Similarity=-0.619 Sum_probs=4.2
Q ss_pred Cccccccccc
Q 046325 422 DVTQIMALHF 431 (442)
Q Consensus 422 dgtrgf~~gR 431 (442)
-||=||-.|+
T Consensus 1265 gggGgfg~G~ 1274 (1282)
T KOG0921|consen 1265 GGGGGFGGGG 1274 (1282)
T ss_pred CCCCCCCCCC
Confidence 3444444443
No 183
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.23 E-value=1.1e+02 Score=32.75 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=41.5
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCe-EEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHH
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSV-KTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 301 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V-~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~ 301 (442)
...|-|.+||.....++|..+|..|+.- -.|..+.+ -+||-.|++...|..|+-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-----------------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-----------------THALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-----------------ceeEEeecchHHHHHHhh
Confidence 4568899999999999999999999741 12222221 389999999999999983
No 184
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=27.00 E-value=45 Score=29.95 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=8.5
Q ss_pred HHHHHHhhcCCceEEecC
Q 046325 194 HLLAQALRSSSKLIVSND 211 (442)
Q Consensus 194 ~~I~~AL~~S~~LeVseD 211 (442)
..|-+.|=...+|++..|
T Consensus 10 ~~Iye~LfkeGVlvakKd 27 (124)
T PTZ00034 10 KAIYRYLFKEGVIVCKKD 27 (124)
T ss_pred HHHHHHHhhCceEEEecC
Confidence 344445544455555433
No 185
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=24.61 E-value=2.1e+02 Score=29.46 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=50.8
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHH
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 301 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~ 301 (442)
-..|+|..+|+..+++...+...|-.||+|++|.+....++.......+ ..+-+..+-|-+.+.+.....
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d---~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDD---KNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCccccccccc---ccceEEEEeeechHHHHHHHH
Confidence 3578999999999999999999999999999999987663211100000 113477889998887765543
No 186
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=23.37 E-value=1.7e+02 Score=24.37 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=38.1
Q ss_pred EEcccCCCCCCHHHHHHHHhc-CC-CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHh
Q 046325 234 VVAENLPEDHSHQNLEKIFGV-VG-SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL 303 (442)
Q Consensus 234 VyV~nLp~d~T~e~LkelFs~-~G-~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~L 303 (442)
.|+=-++.+.+..+|++.++. || .|..|+.+.... + .-=|||.+...++|......|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~------------~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G------------EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C------------cEEEEEEeCCCCcHHHHHHhh
Confidence 444445677888888888877 55 577777544221 0 125999999988888776443
No 187
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=23.21 E-value=1.6e+02 Score=23.42 Aligned_cols=20 Identities=10% Similarity=0.428 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCeEEEEEe
Q 046325 245 HQNLEKIFGVVGSVKTIRIC 264 (442)
Q Consensus 245 ~e~LkelFs~~G~V~~Vri~ 264 (442)
..+|+++|+..|+|..+-+-
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 46899999999999888764
No 188
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.97 E-value=98 Score=31.05 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=23.6
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEee
Q 046325 286 ALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLL 319 (442)
Q Consensus 286 AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~~ 319 (442)
|||+|++..+|..|++.+.... ...++|..+-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999998665443 2456666554
No 189
>PF14893 PNMA: PNMA
Probab=20.97 E-value=73 Score=33.16 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.6
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGV 254 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~ 254 (442)
..|.|.|.++|+++++++|++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3578999999999999999988754
No 190
>PTZ00070 40S ribosomal protein S2; Provisional
Probab=20.97 E-value=81 Score=31.71 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=0.0
Q ss_pred ccCcccCCCCCCCCCCCCCCCCCCCCC
Q 046325 361 NNNVEENSGGSKKGWARGRGKGRGRAQ 387 (442)
Q Consensus 361 ~~~~~~~~~Ggr~GrgRGRGrGRGrg~ 387 (442)
+..+-..+.|.+.+++||||+||||+.
T Consensus 4 ~~~~~~~~~g~~~~~~~g~~~~~~~~~ 30 (257)
T PTZ00070 4 ARGGEGRGFGRRGRGGRGRGRGRGRGG 30 (257)
T ss_pred ccCCcccCCCCCCCCCCCCCCCCCCCC
No 191
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=20.96 E-value=1.1e+02 Score=26.88 Aligned_cols=9 Identities=33% Similarity=0.719 Sum_probs=4.5
Q ss_pred CCceEEEEe
Q 046325 310 RKGLRVRVL 318 (442)
Q Consensus 310 ~~glrV~l~ 318 (442)
.+|-+|+++
T Consensus 63 IRGS~IRFl 71 (119)
T KOG3172|consen 63 IRGSKIRFL 71 (119)
T ss_pred EecCeEEEE
Confidence 345555553
No 192
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.77 E-value=2.3e+02 Score=23.22 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=37.6
Q ss_pred EEcccCCCCCCHHHHHHHHhc-CC-CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHH
Q 046325 234 VVAENLPEDHSHQNLEKIFGV-VG-SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEK 302 (442)
Q Consensus 234 VyV~nLp~d~T~e~LkelFs~-~G-~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~ 302 (442)
-|+=.++.+.+..+|++.++. || .|..|+...-.. . . -=|||.+..-++|......
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~---~---------KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G---E---------KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C---c---------eEEEEEECCCCcHHHHHHh
Confidence 455556778899999988877 55 567776443211 1 1 2599999988888776544
No 193
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=20.74 E-value=1e+02 Score=27.63 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=2.9
Q ss_pred ceEEEEe
Q 046325 312 GLRVRVL 318 (442)
Q Consensus 312 glrV~l~ 318 (442)
|-.++++
T Consensus 63 GttIkyl 69 (134)
T KOG3293|consen 63 GTTIKYL 69 (134)
T ss_pred cceeEEE
Confidence 4444443
No 194
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=20.42 E-value=1.1e+02 Score=29.62 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=13.1
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCe
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSV 258 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V 258 (442)
.-||.+|- ..+-.|.|||....+|
T Consensus 81 APIylenk---~qIGKVDEIfG~i~d~ 104 (215)
T KOG3262|consen 81 APIYLENK---EQIGKVDEIFGPINDV 104 (215)
T ss_pred Cceeecch---hhhcchhhhccccccc
Confidence 45666662 2334556677666554
Done!