Query 046325
Match_columns 442
No_of_seqs 350 out of 1932
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:11:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 1.3E-38 4.5E-43 297.4 13.3 172 135-319 7-185 (193)
2 1s29_A LA protein; winged heli 100.0 9.6E-31 3.3E-35 218.4 5.2 89 134-222 4-92 (92)
3 2cqk_A C-MPL binding protein; 99.9 2.6E-29 8.8E-34 212.8 3.0 89 132-222 6-94 (101)
4 4fxv_A ELAV-like protein 1; RN 99.7 1.5E-16 5.3E-21 132.6 9.9 82 229-320 17-98 (99)
5 3ex7_B RNA-binding protein 8A; 99.7 2.8E-16 9.5E-21 134.8 11.2 85 229-323 20-104 (126)
6 3q2s_C Cleavage and polyadenyl 99.7 7.6E-17 2.6E-21 154.0 7.9 82 230-321 67-150 (229)
7 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.5E-16 8.6E-21 140.3 10.7 82 230-321 38-119 (156)
8 3s8s_A Histone-lysine N-methyl 99.6 9.7E-16 3.3E-20 130.4 10.1 81 230-320 5-85 (110)
9 2dnz_A Probable RNA-binding pr 99.6 3E-15 1E-19 121.9 12.5 84 230-323 4-87 (95)
10 1u6f_A Tcubp1, RNA-binding pro 99.6 1.4E-15 4.7E-20 132.6 10.9 87 227-323 38-124 (139)
11 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.6E-15 5.5E-20 121.4 9.8 82 230-321 5-86 (87)
12 1whw_A Hypothetical protein ri 99.6 2.7E-15 9.2E-20 123.2 11.4 85 229-323 6-90 (99)
13 2dgs_A DAZ-associated protein 99.6 4.9E-15 1.7E-19 121.9 12.4 84 229-323 8-91 (99)
14 2fy1_A RNA-binding motif prote 99.6 3.7E-15 1.3E-19 127.3 12.0 83 230-323 6-88 (116)
15 1x5s_A Cold-inducible RNA-bind 99.6 3.1E-15 1.1E-19 123.5 11.1 84 230-323 11-94 (102)
16 1p27_B RNA-binding protein 8A; 99.6 3.4E-15 1.2E-19 124.1 11.4 85 229-323 21-105 (106)
17 1x5t_A Splicing factor 3B subu 99.6 1.4E-15 4.9E-20 124.0 8.8 84 230-323 4-88 (96)
18 2do4_A Squamous cell carcinoma 99.6 3.4E-15 1.1E-19 123.1 10.6 83 229-322 15-97 (100)
19 4f25_A Polyadenylate-binding p 99.6 2E-15 6.9E-20 128.5 9.2 81 230-322 4-84 (115)
20 2cq0_A Eukaryotic translation 99.6 2.1E-15 7.2E-20 124.9 9.1 85 229-323 13-97 (103)
21 2dnm_A SRP46 splicing factor; 99.6 3.4E-15 1.2E-19 123.7 10.0 83 230-322 12-94 (103)
22 2lxi_A RNA-binding protein 10; 99.6 5.4E-16 1.8E-20 127.1 5.1 81 231-321 1-83 (91)
23 2cph_A RNA binding motif prote 99.6 7E-15 2.4E-19 122.2 11.9 86 228-323 12-99 (107)
24 3md1_A Nuclear and cytoplasmic 99.6 4.8E-15 1.6E-19 117.6 10.3 80 232-321 2-81 (83)
25 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.4E-15 8.1E-20 119.8 8.5 79 230-318 6-84 (85)
26 2x1f_A MRNA 3'-END-processing 99.6 4.2E-15 1.4E-19 121.8 10.1 82 231-322 2-83 (96)
27 2dnh_A Bruno-like 5, RNA bindi 99.6 7.4E-15 2.5E-19 121.8 11.6 84 229-323 13-99 (105)
28 4a8x_A RNA-binding protein wit 99.6 2.5E-15 8.6E-20 120.2 8.2 83 230-321 3-85 (88)
29 2dgp_A Bruno-like 4, RNA bindi 99.6 4.4E-15 1.5E-19 123.5 10.0 85 228-322 10-97 (106)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.9E-15 1E-19 123.7 8.8 84 230-323 11-94 (102)
31 1x5u_A Splicing factor 3B subu 99.6 6.3E-15 2.2E-19 122.3 10.8 83 229-321 13-95 (105)
32 2dgo_A Cytotoxic granule-assoc 99.6 5.2E-15 1.8E-19 124.9 10.2 85 229-323 13-97 (115)
33 1oo0_B CG8781-PA, drosophila Y 99.6 6.2E-15 2.1E-19 123.5 10.4 85 229-323 24-108 (110)
34 2cq3_A RNA-binding protein 9; 99.6 8.5E-15 2.9E-19 121.3 11.1 84 229-324 13-96 (103)
35 2e5h_A Zinc finger CCHC-type a 99.6 4.3E-15 1.5E-19 120.7 9.1 79 230-318 15-93 (94)
36 2d9p_A Polyadenylate-binding p 99.6 5.9E-15 2E-19 122.2 10.1 83 229-323 13-95 (103)
37 3p5t_L Cleavage and polyadenyl 99.6 1.7E-15 5.9E-20 123.0 6.6 82 232-323 2-85 (90)
38 2cqi_A Nucleolysin TIAR; RNA r 99.6 6.3E-15 2.1E-19 122.1 10.1 82 229-322 13-94 (103)
39 1s79_A Lupus LA protein; RRM, 99.6 6E-15 2.1E-19 124.2 10.0 81 228-320 8-88 (103)
40 3ns6_A Eukaryotic translation 99.6 1.8E-15 6.2E-20 125.8 6.7 81 230-320 5-92 (100)
41 3ucg_A Polyadenylate-binding p 99.6 3.1E-15 1E-19 120.2 7.8 81 229-320 4-84 (89)
42 3r27_A HnRNP L, heterogeneous 99.6 5.4E-15 1.8E-19 124.9 9.4 76 229-320 19-96 (100)
43 2cpz_A CUG triplet repeat RNA- 99.6 4.1E-15 1.4E-19 125.7 8.8 84 229-322 23-106 (115)
44 1x4h_A RNA-binding protein 28; 99.6 8.8E-15 3E-19 122.4 10.6 84 229-322 13-102 (111)
45 2lkz_A RNA-binding protein 5; 99.6 2.1E-15 7.1E-20 125.6 6.6 80 230-319 8-93 (95)
46 2cqc_A Arginine/serine-rich sp 99.6 6E-15 2.1E-19 119.8 8.9 80 230-319 14-93 (95)
47 2cpe_A RNA-binding protein EWS 99.6 5.1E-15 1.7E-19 124.6 8.7 86 228-323 12-105 (113)
48 1wex_A Hypothetical protein (r 99.6 1E-14 3.5E-19 123.3 10.5 77 230-322 14-92 (104)
49 1x4a_A Splicing factor, argini 99.6 9.2E-15 3.1E-19 122.4 10.1 80 229-321 20-99 (109)
50 2cq4_A RNA binding motif prote 99.6 3.8E-15 1.3E-19 125.7 7.8 84 227-321 21-104 (114)
51 2cqd_A RNA-binding region cont 99.6 1E-14 3.6E-19 123.4 10.5 83 228-321 14-96 (116)
52 1sjq_A Polypyrimidine tract-bi 99.6 3.8E-15 1.3E-19 126.9 7.5 77 230-322 15-93 (105)
53 2la6_A RNA-binding protein FUS 99.6 1.2E-14 4.2E-19 119.7 10.3 80 229-318 11-98 (99)
54 2div_A TRNA selenocysteine ass 99.6 6E-15 2.1E-19 121.1 8.3 81 230-320 8-93 (99)
55 1x4c_A Splicing factor, argini 99.6 1.2E-14 4.3E-19 122.0 10.4 77 230-323 14-95 (108)
56 3pgw_S U1-70K; protein-RNA com 99.6 2E-14 7E-19 149.5 14.1 84 230-323 101-184 (437)
57 2cpf_A RNA binding motif prote 99.6 5.2E-15 1.8E-19 121.3 7.7 85 230-322 4-89 (98)
58 2dgx_A KIAA0430 protein; RRM d 99.6 9.2E-15 3.2E-19 120.3 9.2 81 230-323 8-92 (96)
59 2jrs_A RNA-binding protein 39; 99.6 1.1E-14 3.6E-19 123.0 9.7 83 229-321 24-106 (108)
60 2jwn_A Embryonic polyadenylate 99.6 6.8E-15 2.3E-19 125.8 8.6 86 227-323 32-117 (124)
61 2dgv_A HnRNP M, heterogeneous 99.6 1.3E-14 4.5E-19 117.3 9.9 81 230-322 7-87 (92)
62 2do0_A HnRNP M, heterogeneous 99.6 2.2E-14 7.5E-19 120.7 11.5 84 230-324 14-97 (114)
63 2ywk_A Putative RNA-binding pr 99.6 8.1E-15 2.8E-19 119.3 8.6 79 230-319 15-93 (95)
64 2ad9_A Polypyrimidine tract-bi 99.6 1.1E-14 3.8E-19 126.6 9.7 79 230-324 30-110 (119)
65 2kxn_B Transformer-2 protein h 99.6 1.1E-14 3.6E-19 127.1 9.7 84 229-322 44-127 (129)
66 1p1t_A Cleavage stimulation fa 99.6 5.6E-15 1.9E-19 122.2 7.4 84 230-323 7-90 (104)
67 2dgu_A Heterogeneous nuclear r 99.6 1.5E-14 5E-19 120.2 9.9 76 230-323 10-85 (103)
68 1why_A Hypothetical protein ri 99.5 2E-14 6.9E-19 117.9 10.5 77 230-322 16-94 (97)
69 2cpi_A CCR4-NOT transcription 99.5 6.2E-15 2.1E-19 124.6 7.5 87 229-322 13-102 (111)
70 1wi8_A EIF-4B, eukaryotic tran 99.5 1.4E-14 4.7E-19 120.4 9.4 82 230-323 14-96 (104)
71 3ulh_A THO complex subunit 4; 99.5 1.6E-14 5.4E-19 120.3 9.8 79 230-319 28-106 (107)
72 2khc_A Testis-specific RNP-typ 99.5 7.6E-15 2.6E-19 124.5 7.9 81 228-318 37-117 (118)
73 2dnq_A RNA-binding protein 4B; 99.5 2.8E-14 9.5E-19 115.5 10.9 76 230-323 7-82 (90)
74 1x4d_A Matrin 3; structural ge 99.5 5.9E-15 2E-19 124.7 7.1 75 230-320 14-91 (102)
75 2cq1_A PTB-like protein L; RRM 99.5 1.8E-14 6.2E-19 121.2 9.6 79 230-324 14-94 (101)
76 2kvi_A Nuclear polyadenylated 99.5 2.2E-14 7.5E-19 117.8 9.8 76 229-322 8-84 (96)
77 2dhg_A TRNA selenocysteine ass 99.5 1.8E-14 6.1E-19 119.3 9.3 82 230-322 8-91 (104)
78 3s7r_A Heterogeneous nuclear r 99.5 1.8E-14 6.1E-19 115.6 8.9 80 228-318 8-87 (87)
79 2cpj_A Non-POU domain-containi 99.5 1.9E-14 6.4E-19 118.6 9.2 79 229-323 13-91 (99)
80 2dng_A Eukaryotic translation 99.5 2.3E-14 7.9E-19 118.8 9.6 81 230-322 14-94 (103)
81 2dgt_A RNA-binding protein 30; 99.5 2.5E-14 8.7E-19 116.2 9.7 76 229-322 8-83 (92)
82 1whx_A Hypothetical protein ri 99.5 3E-14 1E-18 120.8 10.4 78 229-322 8-85 (111)
83 2err_A Ataxin-2-binding protei 99.5 1.3E-14 4.4E-19 122.4 8.0 82 228-321 26-107 (109)
84 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.1E-14 3.6E-19 113.9 6.9 76 232-318 1-76 (77)
85 2rs2_A Musashi-1, RNA-binding 99.5 2.3E-14 8E-19 121.0 9.1 84 229-323 23-106 (109)
86 1x5o_A RNA binding motif, sing 99.5 3.5E-14 1.2E-18 119.6 10.2 81 229-320 23-111 (114)
87 2dnp_A RNA-binding protein 14; 99.5 2.9E-14 9.8E-19 115.5 9.2 76 229-322 7-82 (90)
88 3beg_B Splicing factor, argini 99.5 3.7E-14 1.3E-18 120.8 10.3 68 230-314 15-82 (115)
89 1x4f_A Matrin 3; structural ge 99.5 1.8E-14 6.1E-19 124.0 7.9 77 230-322 24-103 (112)
90 2wbr_A GW182, gawky, LD47780P; 99.5 1.9E-14 6.6E-19 119.1 7.8 73 230-318 6-78 (89)
91 2hvz_A Splicing factor, argini 99.5 3.3E-14 1.1E-18 117.3 9.2 76 232-322 1-76 (101)
92 2dis_A Unnamed protein product 99.5 3.3E-14 1.1E-18 118.7 9.2 83 230-322 7-93 (109)
93 2ytc_A PRE-mRNA-splicing facto 99.5 2.6E-14 8.8E-19 114.0 8.1 74 229-318 10-84 (85)
94 1rk8_A CG8781-PA, CG8781-PA pr 99.5 3.6E-14 1.2E-18 127.9 10.1 86 229-324 70-155 (165)
95 1x4b_A Heterogeneous nuclear r 99.5 2.3E-14 7.7E-19 121.3 8.1 84 228-322 24-107 (116)
96 2krb_A Eukaryotic translation 99.5 1.7E-14 5.8E-19 114.8 6.8 73 231-315 1-80 (81)
97 1x4g_A Nucleolysin TIAR; struc 99.5 3.3E-14 1.1E-18 119.2 8.9 79 228-322 22-100 (109)
98 2kt5_A RNA and export factor-b 99.5 5.7E-14 2E-18 120.4 10.5 82 230-322 34-115 (124)
99 2e5j_A Methenyltetrahydrofolat 99.5 3.4E-14 1.2E-18 116.8 8.7 78 230-322 18-95 (97)
100 3n9u_C Cleavage and polyadenyl 99.5 3.3E-14 1.1E-18 128.2 9.2 82 230-321 54-137 (156)
101 2kn4_A Immunoglobulin G-bindin 99.5 4.9E-14 1.7E-18 125.1 10.2 85 229-323 68-152 (158)
102 2dh8_A DAZ-associated protein 99.5 1.9E-14 6.5E-19 119.5 6.9 83 229-322 14-96 (105)
103 2mss_A Protein (musashi1); RNA 99.5 2.6E-14 8.7E-19 111.6 7.2 74 233-317 1-74 (75)
104 2cqp_A RNA-binding protein 12; 99.5 1.3E-14 4.6E-19 118.8 5.9 81 230-320 14-94 (98)
105 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.6E-14 8.7E-19 118.4 7.4 82 228-321 16-98 (100)
106 2ki2_A SS-DNA binding protein 99.5 1.1E-14 3.7E-19 117.6 4.9 80 232-322 2-81 (90)
107 3lqv_A PRE-mRNA branch site pr 99.5 8.1E-14 2.8E-18 117.6 10.4 78 230-320 7-84 (115)
108 2xnq_A Nuclear polyadenylated 99.5 7.1E-14 2.4E-18 115.6 9.9 75 228-320 19-94 (97)
109 1x4e_A RNA binding motif, sing 99.5 1.7E-14 5.8E-19 115.3 5.8 74 230-313 4-77 (85)
110 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 4.1E-14 1.4E-18 122.6 8.7 80 229-318 61-140 (140)
111 2lea_A Serine/arginine-rich sp 99.5 3.1E-14 1.1E-18 125.0 8.0 84 229-322 45-128 (135)
112 2ek1_A RNA-binding protein 12; 99.5 1.5E-14 5.1E-19 117.7 5.3 80 230-319 14-93 (95)
113 2dgw_A Probable RNA-binding pr 99.5 6.2E-14 2.1E-18 113.5 8.9 80 229-321 8-87 (91)
114 2cpd_A Apobec-1 stimulating pr 99.5 9.4E-14 3.2E-18 114.3 10.1 75 230-322 14-90 (99)
115 2la4_A Nuclear and cytoplasmic 99.5 2.8E-14 9.7E-19 117.7 6.8 75 230-320 26-100 (101)
116 2jvo_A Nucleolar protein 3; nu 99.5 5.3E-14 1.8E-18 118.9 8.4 78 227-322 27-104 (108)
117 2cqh_A IGF-II mRNA-binding pro 99.5 4.2E-14 1.4E-18 115.0 7.3 76 230-322 7-84 (93)
118 3md3_A Nuclear and cytoplasmic 99.5 1.3E-13 4.5E-18 120.7 11.0 81 229-319 85-165 (166)
119 2lcw_A RNA-binding protein FUS 99.2 2.8E-15 9.5E-20 127.2 0.0 85 229-323 5-97 (116)
120 2m2b_A RNA-binding protein 10; 99.5 3E-14 1E-18 123.8 6.5 83 228-321 20-108 (131)
121 2a3j_A U1 small nuclear ribonu 99.5 1E-13 3.5E-18 121.3 9.7 80 230-322 28-111 (127)
122 2jvr_A Nucleolar protein 3; RN 99.5 4E-14 1.4E-18 121.2 7.0 78 230-321 27-105 (111)
123 1wg5_A Heterogeneous nuclear r 99.5 1.1E-13 3.6E-18 115.6 9.1 79 230-320 14-93 (104)
124 2cqg_A TDP-43, TAR DNA-binding 99.5 1.5E-13 5E-18 113.8 9.8 81 229-321 13-93 (103)
125 1wez_A HnRNP H', FTP-3, hetero 99.5 9E-14 3.1E-18 116.4 8.5 79 230-321 14-92 (102)
126 2qfj_A FBP-interacting repress 99.5 2.7E-13 9.2E-18 124.4 12.4 85 229-323 123-207 (216)
127 4f02_A Polyadenylate-binding p 99.5 1.1E-13 3.7E-18 129.0 9.6 116 192-321 66-181 (213)
128 1nu4_A U1A RNA binding domain; 99.5 4.2E-14 1.4E-18 115.5 5.9 82 229-323 6-91 (97)
129 2nlw_A Eukaryotic translation 99.5 6.2E-14 2.1E-18 117.3 6.8 78 230-319 14-98 (105)
130 2fc9_A NCL protein; structure 99.5 1.2E-13 4.1E-18 113.9 8.4 79 229-321 13-91 (101)
131 1iqt_A AUF1, heterogeneous nuc 99.5 4.2E-14 1.4E-18 110.2 5.3 75 233-318 1-75 (75)
132 2cpx_A Hypothetical protein FL 99.5 1.7E-13 5.7E-18 115.4 9.3 81 229-323 23-107 (115)
133 2i2y_A Fusion protein consists 99.5 1.7E-13 5.8E-18 121.1 9.7 79 228-321 70-148 (150)
134 1wf1_A RNA-binding protein RAL 99.5 1.3E-13 4.6E-18 115.7 8.5 73 230-320 26-99 (110)
135 1fj7_A Nucleolin RBD1, protein 99.5 2.2E-14 7.6E-19 118.3 3.3 81 229-321 15-95 (101)
136 2cpy_A RNA-binding protein 12; 99.5 5.3E-14 1.8E-18 119.4 5.7 81 230-322 14-95 (114)
137 3nmr_A Cugbp ELAV-like family 99.4 3.6E-13 1.2E-17 119.1 11.1 79 229-318 93-174 (175)
138 2db1_A Heterogeneous nuclear r 99.4 7.5E-14 2.6E-18 119.6 6.3 79 230-320 16-97 (118)
139 1fjc_A Nucleolin RBD2, protein 99.4 9.9E-14 3.4E-18 113.2 6.8 80 228-322 13-92 (96)
140 1b7f_A Protein (SXL-lethal pro 99.4 6.3E-13 2.2E-17 117.0 12.2 80 229-318 87-168 (168)
141 2e44_A Insulin-like growth fac 99.4 2.7E-13 9.4E-18 110.6 9.1 78 230-321 14-92 (96)
142 2fc8_A NCL protein; structure 99.4 2.8E-13 9.5E-18 111.7 8.8 81 229-322 13-93 (102)
143 2hzc_A Splicing factor U2AF 65 99.4 2.2E-13 7.6E-18 108.8 7.8 70 230-316 5-85 (87)
144 2g4b_A Splicing factor U2AF 65 99.4 5.1E-13 1.8E-17 118.3 10.8 112 192-318 60-171 (172)
145 1fxl_A Paraneoplastic encephal 99.4 4.5E-13 1.5E-17 117.4 10.2 81 231-321 2-82 (167)
146 1x5p_A Negative elongation fac 99.4 5E-13 1.7E-17 109.7 9.7 75 230-322 14-88 (97)
147 4f02_A Polyadenylate-binding p 99.4 3.6E-13 1.2E-17 125.5 10.1 82 230-321 14-95 (213)
148 2lmi_A GRSF-1, G-rich sequence 99.4 9.2E-14 3.2E-18 116.6 5.4 79 230-320 10-91 (107)
149 2hgl_A HNRPF protein, heteroge 99.4 1.2E-13 4.1E-18 122.3 6.0 79 230-320 43-124 (136)
150 1wel_A RNA-binding protein 12; 99.4 7.9E-14 2.7E-18 119.8 4.6 81 230-321 24-104 (124)
151 2f3j_A RNA and export factor b 99.4 4E-13 1.4E-17 123.4 9.6 81 230-321 87-167 (177)
152 1l3k_A Heterogeneous nuclear r 99.4 6.3E-13 2.2E-17 120.1 10.8 84 229-323 102-185 (196)
153 1fxl_A Paraneoplastic encephal 99.4 1.3E-12 4.3E-17 114.5 12.3 79 229-317 86-166 (167)
154 1wg1_A KIAA1579 protein, homol 99.4 2.7E-13 9.4E-18 109.5 7.3 74 230-320 4-77 (88)
155 2cjk_A Nuclear polyadenylated 99.4 5E-13 1.7E-17 117.8 9.5 113 192-321 54-166 (167)
156 2dnn_A RNA-binding protein 12; 99.4 3.1E-13 1.1E-17 115.1 7.8 78 230-320 15-92 (109)
157 1sjr_A Polypyrimidine tract-bi 99.4 7.5E-13 2.6E-17 121.1 10.2 77 231-321 46-124 (164)
158 2hgn_A Heterogeneous nuclear r 99.4 1.7E-13 5.7E-18 121.9 5.6 80 230-322 45-124 (139)
159 2cq2_A Hypothetical protein LO 99.4 2.9E-13 9.9E-18 116.9 6.9 76 230-321 24-106 (114)
160 2xs2_A Deleted in azoospermia- 99.4 2.5E-13 8.6E-18 112.1 6.2 81 229-322 7-87 (102)
161 3tyt_A Heterogeneous nuclear r 99.4 7E-13 2.4E-17 124.2 9.7 76 230-320 3-79 (205)
162 1b7f_A Protein (SXL-lethal pro 99.4 6.6E-13 2.2E-17 116.9 8.8 82 230-321 2-83 (168)
163 3egn_A RNA-binding protein 40; 99.4 3.9E-13 1.3E-17 117.9 7.1 81 230-323 44-132 (143)
164 2yh0_A Splicing factor U2AF 65 99.4 1.4E-12 4.7E-17 118.0 10.7 84 229-322 112-195 (198)
165 3md3_A Nuclear and cytoplasmic 99.4 9.4E-13 3.2E-17 115.2 9.1 80 232-322 1-80 (166)
166 2e5g_A U6 snRNA-specific termi 99.4 7.8E-13 2.7E-17 107.9 8.0 76 230-321 7-82 (94)
167 1wf0_A TDP-43, TAR DNA-binding 99.4 8.7E-13 3E-17 106.2 7.5 72 230-320 4-75 (88)
168 3d2w_A TAR DNA-binding protein 99.4 1.5E-12 5E-17 106.3 8.7 72 229-319 9-80 (89)
169 3zzy_A Polypyrimidine tract-bi 99.4 1.6E-12 5.4E-17 114.7 9.5 76 231-321 28-106 (130)
170 2qfj_A FBP-interacting repress 99.4 1.6E-12 5.4E-17 119.2 9.9 82 229-320 26-107 (216)
171 2bz2_A Negative elongation fac 99.4 1.7E-12 5.8E-17 112.0 9.3 89 215-322 24-112 (121)
172 3nmr_A Cugbp ELAV-like family 99.4 2.4E-12 8.2E-17 113.8 10.0 82 230-319 2-86 (175)
173 1fje_B Nucleolin RBD12, protei 99.4 2.5E-12 8.5E-17 114.6 10.2 78 229-321 97-174 (175)
174 2e5i_A Heterogeneous nuclear r 99.4 2.1E-12 7.3E-17 112.8 9.5 75 232-322 26-103 (124)
175 2dnl_A Cytoplasmic polyadenyla 99.4 1.1E-12 3.8E-17 111.2 7.5 67 230-304 7-73 (114)
176 1l3k_A Heterogeneous nuclear r 99.3 1.9E-12 6.7E-17 116.9 9.3 82 229-321 11-92 (196)
177 2hgm_A HNRPF protein, heteroge 99.3 1E-12 3.5E-17 115.1 6.9 77 230-319 41-119 (126)
178 2dha_A FLJ20171 protein; RRM d 99.3 5.3E-13 1.8E-17 116.2 4.9 78 230-319 22-103 (123)
179 2diu_A KIAA0430 protein; struc 99.3 2.4E-12 8.1E-17 107.8 8.5 74 231-324 8-87 (96)
180 2pe8_A Splicing factor 45; RRM 99.3 8.1E-12 2.8E-16 105.6 10.0 82 230-320 7-93 (105)
181 3u1l_A PRE-mRNA-splicing facto 99.3 4E-12 1.4E-16 122.8 8.8 78 229-322 132-230 (240)
182 3pgw_A U1-A; protein-RNA compl 99.3 7.1E-12 2.4E-16 120.5 10.5 81 229-322 7-91 (282)
183 1qm9_A Polypyrimidine tract-bi 99.3 4.5E-12 1.5E-16 115.5 7.9 78 230-322 2-80 (198)
184 2adc_A Polypyrimidine tract-bi 99.3 8.7E-12 3E-16 117.4 9.9 78 229-321 32-110 (229)
185 3pgw_A U1-A; protein-RNA compl 99.3 9.4E-12 3.2E-16 119.6 9.9 75 230-319 206-281 (282)
186 2cjk_A Nuclear polyadenylated 99.3 6.9E-12 2.4E-16 110.4 7.8 78 230-319 2-79 (167)
187 2ghp_A U4/U6 snRNA-associated 99.3 9.2E-12 3.2E-16 120.3 9.4 82 229-321 208-291 (292)
188 2adc_A Polypyrimidine tract-bi 99.2 4E-11 1.4E-15 112.8 11.7 76 230-320 150-227 (229)
189 3smz_A Protein raver-1, ribonu 99.2 2.1E-11 7.3E-16 117.3 9.9 84 229-323 182-266 (284)
190 3sde_A Paraspeckle component 1 99.2 1.8E-11 6.2E-16 117.5 9.3 76 229-320 20-95 (261)
191 1qm9_A Polypyrimidine tract-bi 99.2 2.4E-11 8.1E-16 110.7 9.2 76 230-320 119-196 (198)
192 3smz_A Protein raver-1, ribonu 99.2 4.1E-11 1.4E-15 115.3 10.8 83 230-322 94-176 (284)
193 2dit_A HIV TAT specific factor 99.2 3.5E-11 1.2E-15 101.7 8.7 78 230-321 14-102 (112)
194 2j8a_A Histone-lysine N-methyl 99.2 1.3E-11 4.5E-16 109.0 6.0 78 232-319 3-94 (136)
195 3sde_A Paraspeckle component 1 99.2 3.9E-11 1.3E-15 115.2 9.3 81 230-321 95-179 (261)
196 3v4m_A Splicing factor U2AF 65 99.2 5.1E-11 1.7E-15 100.6 8.7 82 230-319 4-95 (105)
197 2g4b_A Splicing factor U2AF 65 99.2 3.5E-11 1.2E-15 106.4 8.0 74 230-320 3-87 (172)
198 3tyt_A Heterogeneous nuclear r 99.2 4.6E-11 1.6E-15 111.8 8.0 77 230-318 122-204 (205)
199 2ghp_A U4/U6 snRNA-associated 99.1 5.5E-11 1.9E-15 114.8 8.3 78 228-318 38-115 (292)
200 2yh0_A Splicing factor U2AF 65 99.1 4.6E-11 1.6E-15 107.9 7.0 75 230-321 3-88 (198)
201 3ue2_A Poly(U)-binding-splicin 99.1 1.9E-10 6.4E-15 99.4 8.2 82 230-319 19-107 (118)
202 1fje_B Nucleolin RBD12, protei 99.1 2.6E-11 8.9E-16 107.9 1.8 81 229-321 11-91 (175)
203 3tht_A Alkylated DNA repair pr 99.1 1.7E-10 5.9E-15 116.8 8.0 74 230-319 17-97 (345)
204 2d9o_A DNAJ (HSP40) homolog, s 99.0 5.5E-10 1.9E-14 93.8 8.9 66 241-323 27-92 (100)
205 3s6e_A RNA-binding protein 39; 99.0 5.1E-10 1.8E-14 96.2 8.8 76 230-319 6-91 (114)
206 1jmt_A Splicing factor U2AF 35 99.0 1.2E-10 4E-15 98.1 4.3 72 236-318 20-103 (104)
207 1owx_A Lupus LA protein, SS-B, 98.9 5E-09 1.7E-13 91.3 8.9 75 229-319 16-94 (121)
208 2dnr_A Synaptojanin-1; RRM dom 98.5 2.1E-07 7.1E-12 77.2 7.2 73 230-321 6-86 (91)
209 3dxb_A Thioredoxin N-terminall 98.4 4E-07 1.4E-11 85.0 8.3 72 242-319 140-211 (222)
210 1ufw_A Synaptojanin 2; RNP dom 98.2 1.7E-06 5.7E-11 72.2 6.4 70 230-318 14-92 (95)
211 2l9w_A U4/U6 snRNA-associated- 97.7 9E-05 3.1E-09 63.5 7.4 72 230-317 20-96 (117)
212 1whv_A Poly(A)-specific ribonu 96.1 0.0087 3E-07 50.1 6.0 54 232-304 17-70 (100)
213 2dhx_A Poly (ADP-ribose) polym 96.1 0.042 1.5E-06 46.3 9.9 68 231-317 8-80 (104)
214 1wey_A Calcipressin 1; structu 95.9 0.012 4E-07 49.8 5.8 74 231-320 5-83 (104)
215 3ctr_A Poly(A)-specific ribonu 95.7 0.011 3.7E-07 49.7 4.9 53 233-304 8-60 (101)
216 1wwh_A Nucleoporin 35, nucleop 95.4 0.043 1.5E-06 47.4 7.7 63 229-309 22-84 (119)
217 3pq1_A Poly(A) RNA polymerase; 95.1 0.0091 3.1E-07 62.6 3.0 59 227-301 49-107 (464)
218 1uw4_A UPF3X; nonsense mediate 94.7 0.1 3.5E-06 42.9 7.8 69 232-308 2-70 (91)
219 2kn4_A Immunoglobulin G-bindin 92.4 0.076 2.6E-06 46.1 3.3 27 282-308 12-38 (158)
220 3htx_A HEN1; HEN1, small RNA m 89.4 0.19 6.5E-06 56.5 3.5 89 135-224 102-209 (950)
221 2i2y_A Fusion protein consists 88.3 0.19 6.4E-06 43.4 2.0 36 282-318 12-48 (150)
222 2l08_A Regulator of nonsense t 88.1 0.57 1.9E-05 39.0 4.8 70 231-308 9-78 (97)
223 3d45_A Poly(A)-specific ribonu 84.4 2.4 8.2E-05 44.6 8.4 56 232-306 441-496 (507)
224 3p3d_A Nucleoporin 53; structu 81.4 1.3 4.5E-05 38.7 4.1 79 231-311 7-89 (132)
225 1b34_A Protein (small nuclear 80.5 0.33 1.1E-05 41.6 0.0 10 284-293 64-73 (119)
226 1b34_A Protein (small nuclear 78.5 0.42 1.4E-05 40.9 0.0 8 256-263 12-19 (119)
227 1jh4_B PAIP1, polyadenylate-bi 78.4 0.88 3E-05 28.7 1.4 14 67-80 3-16 (26)
228 4f25_A Polyadenylate-binding p 60.3 2.8 9.5E-05 34.4 1.1 18 230-247 96-113 (115)
229 1jgn_B PAIP2, polyadenylate-bi 48.6 9 0.00031 23.8 1.7 14 67-80 3-16 (26)
230 4gyx_A Type III collagen fragm 40.7 12 0.00041 24.0 1.4 15 415-429 5-19 (31)
231 1wfx_A Probable RNA 2'-phospho 38.5 16 0.00055 33.5 2.6 49 168-219 23-75 (186)
232 3fry_A Probable copper-exporti 25.1 1.6E+02 0.0056 21.0 5.9 56 230-302 5-60 (73)
233 4e8u_A Putative uncharacterize 23.4 1.9E+02 0.0066 26.0 7.0 50 232-294 13-73 (172)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=1.3e-38 Score=297.37 Aligned_cols=172 Identities=24% Similarity=0.388 Sum_probs=149.8
Q ss_pred CCCHHHHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcC--CceEEecCC
Q 046325 135 VLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSS--SKLIVSNDG 212 (442)
Q Consensus 135 ~~~~~~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S--~~LeVseDg 212 (442)
+..+++.++|++||||||||+||++|.||+++|.++ +|||||++|++|+||+.|+.|.+.|++||+.| ..|+|++++
T Consensus 7 ~~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~ 85 (193)
T 2voo_A 7 EKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDK 85 (193)
T ss_dssp --CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTS
T ss_pred CCcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEeccc
Confidence 345789999999999999999999999999999765 99999999999999999999999999999999 899999999
Q ss_pred ccccccC--CCCch---hhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEE
Q 046325 213 KKVRRKH--PFTDK---EREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHAL 287 (442)
Q Consensus 213 ~kVRRk~--Pl~e~---~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AF 287 (442)
.+|||.. |+++. ...+...++|||+|||.++|+++|+++|+.||.|..|+|+++.. . ..+||||
T Consensus 86 ~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~---~--------~~kG~aF 154 (193)
T 2voo_A 86 TKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH---K--------AFKGSIF 154 (193)
T ss_dssp SEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT---C--------CEEEEEE
T ss_pred ceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC---C--------CcccEEE
Confidence 9999985 44432 12456789999999999999999999999999999999988643 1 2478999
Q ss_pred EEeCCHHHHHHHHHHhcCCcCCCCceEEEEee
Q 046325 288 VEYESTDIAEKAVEKLNDERNWRKGLRVRVLL 319 (442)
Q Consensus 288 VEFes~edA~kAv~~Ln~~~~~~~glrV~l~~ 319 (442)
|+|++.++|++|++.++ ..+.++.|.|....
T Consensus 155 VeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 155 VVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp EEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred EEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 99999999999997665 47777778887644
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.96 E-value=9.6e-31 Score=218.36 Aligned_cols=89 Identities=33% Similarity=0.557 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecCCc
Q 046325 134 NVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSNDGK 213 (442)
Q Consensus 134 ~~~~~~~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseDg~ 213 (442)
.++++++.++|++||||||||+||++|.||+++|.+|+||||||++|++|+|||+|+.|+++|++||+.|+.|+|++||+
T Consensus 4 ~~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~ 83 (92)
T 1s29_A 4 MPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGL 83 (92)
T ss_dssp SCCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSS
T ss_pred CCCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCC
Q 046325 214 KVRRKHPFT 222 (442)
Q Consensus 214 kVRRk~Pl~ 222 (442)
+|||+.|||
T Consensus 84 ~VRR~~PlP 92 (92)
T 1s29_A 84 MVRRRDPLP 92 (92)
T ss_dssp EEEESSCCC
T ss_pred EEeCCCCCC
Confidence 999999986
No 3
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.95 E-value=2.6e-29 Score=212.76 Aligned_cols=89 Identities=34% Similarity=0.504 Sum_probs=84.5
Q ss_pred CCCCCCHHHHHHHHhcceeeccCCCCChhHHHHhhhcCCCCCceecccccchhHHHhhccChHHHHHHhhcCCceEEecC
Q 046325 132 SKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHVNKDPEGFVPLSVIGSMKKIKSLVGNNHLLAQALRSSSKLIVSND 211 (442)
Q Consensus 132 ~~~~~~~~~~~~I~kQvEyYFSd~NL~~D~fL~~~m~~d~eG~Vpi~~i~sF~kmK~Lt~d~~~I~~AL~~S~~LeVseD 211 (442)
...+..++++++|++||||||||+||++|.||+++| |+||||||++|++|+|||+|+.|+++|++||+.|+.|+|++|
T Consensus 6 ~~~~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsed 83 (101)
T 2cqk_A 6 SGAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEK 83 (101)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHS--CTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHhhcchhhhccCHHHHHhh--hcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCC
Confidence 345778899999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred CccccccCCCC
Q 046325 212 GKKVRRKHPFT 222 (442)
Q Consensus 212 g~kVRRk~Pl~ 222 (442)
|++|||+.|++
T Consensus 84 g~kVRr~~~~~ 94 (101)
T 2cqk_A 84 GEKVRPSHKRC 94 (101)
T ss_dssp SSEEEECCSCC
T ss_pred CCeeeeCCCCC
Confidence 99999998764
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=132.61 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=73.6
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
.+.++|||+|||.++|+++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~----------~kG~afV~f~~~~~A~~Ai~~lng~~~ 86 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGH----------SLGYGFVNYVTAKDAERAINTLNGLRL 86 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC----------EEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCc----------ccccEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578999999999999999999999999999999988755432 368999999999999999999999999
Q ss_pred CCCceEEEEeec
Q 046325 309 WRKGLRVRVLLR 320 (442)
Q Consensus 309 ~~~glrV~l~~~ 320 (442)
.++.|+|.++.+
T Consensus 87 ~gr~l~V~~AkP 98 (99)
T 4fxv_A 87 QSKTIKVSYARP 98 (99)
T ss_dssp TTEECEEEECCB
T ss_pred CCEEEEEEEeeC
Confidence 999999998753
No 5
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=2.8e-16 Score=134.84 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=75.2
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||.|||.++|+++|+++|+.||.|..|.|+.+..+.. .+|||||+|.+.++|++||+.||+..+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 89 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY----------LKGYTLVEYETYKEAQAAMEGLNGQDL 89 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSS----------BCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc----------cceEEEEEECCHHHHHHHHHHhCCCee
Confidence 4578999999999999999999999999999999987654322 368999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++..+..
T Consensus 90 ~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 90 MGQPISVDWCFVRGP 104 (126)
T ss_dssp SSSBCEEEESEESSS
T ss_pred CCeEEEEEEecCCCC
Confidence 999999999876543
No 6
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=7.6e-17 Score=154.00 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=72.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVG--SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G--~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
..++|||+|||.++|+++|+++|+.|| .|+.|+|+++..+.. .||||||+|++.++|++||+.||+..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~----------skGfaFV~f~~~~~a~~Ai~~lng~~ 136 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ----------SKGFALVGVGSEASSKKLMDLLPKRE 136 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCC----------EEEEEEEEESCTTHHHHHHTTSTTSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCc----------cceEEEEEECCHHHHHHHHHHcCCCe
Confidence 467899999999999999999999999 999999988755432 36899999999999999999999999
Q ss_pred CCCCceEEEEeecC
Q 046325 308 NWRKGLRVRVLLRC 321 (442)
Q Consensus 308 ~~~~glrV~l~~~~ 321 (442)
+.++.|+|.++...
T Consensus 137 ~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 137 LHGQNPVVTPVNKQ 150 (229)
T ss_dssp BTTBCCEEEECCHH
T ss_pred ECCEEeEEEECCCC
Confidence 99999999998653
No 7
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=2.5e-16 Score=140.31 Aligned_cols=82 Identities=23% Similarity=0.235 Sum_probs=73.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++|+++|+++|+.||.|..|+|+.+..+.. .++||||+|++.++|++||+.||+..+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKT----------ACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc----------cceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 579999999999999999999999999999999988654332 3689999999999999999999999999
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.|+|.++...
T Consensus 108 g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 108 DRIIRTDWDAGF 119 (156)
T ss_dssp TEECEEEEESCC
T ss_pred CeEEEEEECCCC
Confidence 999999998753
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=9.7e-16 Score=130.37 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=73.5
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||+++++++|+++|++||.|..|+|+++..++. .+|||||+|++.++|++||+.||+..+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~----------~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRK----------HLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCc----------eeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578999999999999999999999999999999988765432 3689999999999999999999999999
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
++.|+|.++..
T Consensus 75 gr~i~V~~a~~ 85 (110)
T 3s8s_A 75 GNIIHAQLDIK 85 (110)
T ss_dssp TEECEEEECST
T ss_pred CeEEEEEECCC
Confidence 99999998753
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3e-15 Score=121.88 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=74.9
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|++.++|++|++.||+..+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGR----------SKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCC----------CCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCc----------eeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 578999999999999999999999999999999988654332 3589999999999999999999999999
Q ss_pred CCceEEEEeecCCC
Q 046325 310 RKGLRVRVLLRCSP 323 (442)
Q Consensus 310 ~~glrV~l~~~~~~ 323 (442)
++.|+|.++..+..
T Consensus 74 g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 74 GRPMRVGHVTERLD 87 (95)
T ss_dssp SSCCEEEESSCCCC
T ss_pred CcEEEEEEcccccC
Confidence 99999999876544
No 10
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=132.65 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=76.0
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
+....++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~ 107 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQ----------SRGYGFVKFQSGSSAQQAIAGLNGF 107 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTE----------EEEEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC----------cceEEEEEECCHHHHHHHHHHhCCC
Confidence 344679999999999999999999999999999999987654321 3689999999999999999999999
Q ss_pred cCCCCceEEEEeecCCC
Q 046325 307 RNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 307 ~~~~~glrV~l~~~~~~ 323 (442)
.++++.|+|.++.....
T Consensus 108 ~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 108 NILNKRLKVALAASGHQ 124 (139)
T ss_dssp ECSSCEEEEEESSCCCC
T ss_pred EECCeEEEEEECCCCCC
Confidence 99999999999876543
No 11
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=121.35 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=72.0
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGK----------SKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCc----------cceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 478999999999999999999999999999999987654322 3689999999999999999999999999
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.|+|.++.++
T Consensus 75 g~~l~v~~a~~k 86 (87)
T 3bs9_A 75 GRQIRTNWATRK 86 (87)
T ss_dssp TEECEEEEEC--
T ss_pred CeEEEEEecCCC
Confidence 999999988754
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-15 Score=123.25 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=74.8
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++|++.||+..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKK----------PKGFAFVTFMFPEHAVKAYAEVDGQVF 75 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCC----------CCSEEEEEESSHHHHHHHHHHTTTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCC----------cCeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578999999999999999999999999999999987654332 358999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++..+..
T Consensus 76 ~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 76 QGRMLHVLPSTIKKE 90 (99)
T ss_dssp SSCEEEEEECCCCST
T ss_pred CCcEEEEEEcCCCcc
Confidence 999999999876543
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.9e-15 Score=121.87 Aligned_cols=84 Identities=14% Similarity=0.230 Sum_probs=74.2
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|++.++|++|++ ||+..+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~-~~~~~~ 76 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR----------PRGFGFITFEDEQSVDQAVN-MHFHDI 76 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCS----------CCSEEEEEESSHHHHHHHHH-HCCCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC----------CCceEEEEECCHHHHHHHHH-hCCCEE
Confidence 3579999999999999999999999999999999987654332 36899999999999999998 999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++..+..
T Consensus 77 ~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 77 MGKKVEVKRAEPRDS 91 (99)
T ss_dssp SSCBCEEEECCCCCC
T ss_pred CCeEEEEEECCCCcc
Confidence 999999999876544
No 14
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=127.34 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=74.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|.|+.+. ++. .+|||||+|.+.++|++|++.||+..+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~----------~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSK----------SRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTT----------CCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCC----------cccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 57899999999999999999999999999999998865 221 3689999999999999999999999999
Q ss_pred CCceEEEEeecCCC
Q 046325 310 RKGLRVRVLLRCSP 323 (442)
Q Consensus 310 ~~glrV~l~~~~~~ 323 (442)
++.|+|.++.....
T Consensus 75 g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 75 GKAIKVEQAKKPSF 88 (116)
T ss_dssp SSBCEEEECCCSSC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999876543
No 15
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.1e-15 Score=123.51 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=75.0
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++|++.||+..+.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQR----------SRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCS----------CCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC----------cccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578999999999999999999999999999999987654332 3689999999999999999999999999
Q ss_pred CCceEEEEeecCCC
Q 046325 310 RKGLRVRVLLRCSP 323 (442)
Q Consensus 310 ~~glrV~l~~~~~~ 323 (442)
++.|+|.++.....
T Consensus 81 g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 81 GRQIRVDQAGKSSD 94 (102)
T ss_dssp SCCCEEEEEECCCC
T ss_pred CeEEEEEECCCCCC
Confidence 99999999886543
No 16
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.4e-15 Score=124.09 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=75.6
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|.|+++..++. .+|||||+|.+.++|++|++.||+..+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 90 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY----------LKGYTLVEYETYKEAQAAMEGLNGQDL 90 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS----------EEEEEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCc----------eeeEEEEEECCHHHHHHHHHHhcCCEE
Confidence 3578999999999999999999999999999999987654332 368999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++..+.+
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 91 MGQPISVDWCFVRGP 105 (106)
T ss_dssp SSSBCEEEESEESSC
T ss_pred CCcEEEEEeecCCCC
Confidence 999999999876543
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=124.03 Aligned_cols=84 Identities=19% Similarity=0.316 Sum_probs=74.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEE-EEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTI-RICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~V-ri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||.++++++|+++|+.||.|..| +|+++..+.. .+|||||+|++.++|++|++.||+..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~----------~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN----------SKGYAFINFASFDASDAAIEAMNGQYL 73 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCS----------CCSEEEEEBSSHHHHHHHHHTTTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCC----------cCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 47899999999999999999999999999999 9987644332 368999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++..+..
T Consensus 74 ~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 74 CNRPITVSYAFKKDS 88 (96)
T ss_dssp TTEECEEEESCCCCC
T ss_pred CCEEEEEEEecccCC
Confidence 999999999876544
No 18
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=123.08 Aligned_cols=83 Identities=25% Similarity=0.309 Sum_probs=73.8
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|..+. ++ ..+|||||+|.+.++|++|++.||+..+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g----------~~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AG----------KPKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TS----------CEEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CC----------CEEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 467999999999999999999999999999999998764 22 1368999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++.++.
T Consensus 84 ~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 84 KENIIKVAISNSGP 97 (100)
T ss_dssp SSCEEEEEECCCCS
T ss_pred CCEEEEEEECCCCC
Confidence 99999999887544
No 19
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.60 E-value=2e-15 Score=128.53 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=71.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
...+|||+|||.++++++|+++|+.||.|..|+|+++.. ..||||||+|++.++|++||+.||+..+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~------------~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN------------GSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT------------EEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC------------CCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 356899999999999999999999999999999987532 13689999999999999999999999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|+|..+..+.
T Consensus 72 g~~i~V~~a~~~~ 84 (115)
T 4f25_A 72 DRKVFVGRFKSRK 84 (115)
T ss_dssp TEECEEEESSCCC
T ss_pred CEEEEEEECCCcc
Confidence 9999999876544
No 20
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=124.94 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=75.0
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||.|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++|++.||+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ----------SKGFAFISFHRREDAARAIAGVSGFGY 82 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCS----------EEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCc----------eeeEEEEEECCHHHHHHHHHHcCCCee
Confidence 3579999999999999999999999999999999987654322 368999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++.++..
T Consensus 83 ~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 83 DHLILNVEWAKPSTN 97 (103)
T ss_dssp TTEECEEEESSCCCC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999876543
No 21
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=123.70 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=74.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|.|+++..+.. .+|||||+|.+.++|++|++.||+..+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKA----------PRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCS----------BCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC----------CCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 579999999999999999999999999999999987654332 3689999999999999999999999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|+|.++....
T Consensus 82 g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 82 GRELRVQVARYGR 94 (103)
T ss_dssp TBCCEEEECSSCC
T ss_pred CcEEEEEECCcCC
Confidence 9999999987543
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=127.13 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=69.0
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC-CcC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVG-SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND-ERN 308 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G-~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~-~~~ 308 (442)
+++|||+|||.++|+++|+++|+.|| .|..|+|+++..++. .+|||||+|.+.++|++|++.|++ ..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~----------~rg~aFV~F~~~~~A~~Ai~~~~~~~~~ 70 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQ----------SRGFAFVEFSHLQDATRWMEANQHSLNI 70 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCC----------CSSEEEEECSSHHHHHHHHHTTTTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCC----------cCceEEEEecCHHHHHHHHHhcCCCeEE
Confidence 47899999999999999999999999 899999988765443 368999999999999999988754 457
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++.++
T Consensus 71 ~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 71 LGQKVSMHYSDPK 83 (91)
T ss_dssp TTEEEEEECCCSC
T ss_pred CCEEEEEEEcCCC
Confidence 7788888877643
No 23
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=7e-15 Score=122.19 Aligned_cols=86 Identities=15% Similarity=0.310 Sum_probs=74.9
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCC-CCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHh-cC
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHP-PESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL-ND 305 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~-~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~L-n~ 305 (442)
....++|||+|||.++++++|+++|+.||.|..|+|+++ ..+.. .+|||||+|.+.++|++|++.| |+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~~~ 81 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGA----------HRGFGFVDFITKQDAKKAFNALCHS 81 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCS----------SCSEEEEEESSHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCC----------cCceEEEEECCHHHHHHHHHHhccC
Confidence 346799999999999999999999999999999999876 33322 3689999999999999999999 89
Q ss_pred CcCCCCceEEEEeecCCC
Q 046325 306 ERNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 306 ~~~~~~glrV~l~~~~~~ 323 (442)
..+.++.|+|.++.....
T Consensus 82 ~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 82 THLYGRRLVLEWADSEVT 99 (107)
T ss_dssp CBSSSCBCEEEECCCCCC
T ss_pred CeECCCEEEEEeCCCCCC
Confidence 999999999999876543
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.59 E-value=4.8e-15 Score=117.56 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=71.6
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRK 311 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~ 311 (442)
.+|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~----------~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 71 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS----------SRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 71 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC----------EEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCC----------ccceEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 5899999999999999999999999999999987654332 368999999999999999999999999999
Q ss_pred ceEEEEeecC
Q 046325 312 GLRVRVLLRC 321 (442)
Q Consensus 312 glrV~l~~~~ 321 (442)
.|+|.++.++
T Consensus 72 ~l~v~~a~~~ 81 (83)
T 3md1_A 72 PLRINWAAKL 81 (83)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCcC
Confidence 9999987754
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.59 E-value=2.4e-15 Score=119.84 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=70.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|++.++|++|++.||+..+.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK----------HRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTE----------ECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCc----------cccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 579999999999999999999999999999999977643321 3689999999999999999999999999
Q ss_pred CCceEEEEe
Q 046325 310 RKGLRVRVL 318 (442)
Q Consensus 310 ~~glrV~l~ 318 (442)
++.|+|.++
T Consensus 76 g~~l~v~~a 84 (85)
T 3mdf_A 76 GRTIRVNLA 84 (85)
T ss_dssp TEECEEEEC
T ss_pred CcEEEEEEc
Confidence 988998875
No 26
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=4.2e-15 Score=121.77 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=73.3
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
+++|||+|||.++++++|+++|+.||.|..|+|.++..++. .+|||||+|.+.++|++|++.||+..+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 71 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGR----------SKGYAFIEFRDLESSASAVRNLNGYQLGS 71 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCC----------BCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCc----------cceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 68999999999999999999999999999999987654332 36899999999999999999999999999
Q ss_pred CceEEEEeecCC
Q 046325 311 KGLRVRVLLRCS 322 (442)
Q Consensus 311 ~glrV~l~~~~~ 322 (442)
+.|+|.++..+.
T Consensus 72 ~~l~V~~a~~~~ 83 (96)
T 2x1f_A 72 RFLKCGYSSNSD 83 (96)
T ss_dssp EECEEEECSCSS
T ss_pred eEEEEEEcCCCC
Confidence 999999987644
No 27
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=7.4e-15 Score=121.84 Aligned_cols=84 Identities=18% Similarity=0.255 Sum_probs=73.8
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++.. + ..+|||||+|.+.++|++|++.||+..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g----------~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 81 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-G----------SSKGCAFVKFSSHTEAQAAIHALHGSQT 81 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS-S----------CEEEEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C----------CcCcEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 3579999999999999999999999999999999987642 1 1368999999999999999999999988
Q ss_pred CC---CceEEEEeecCCC
Q 046325 309 WR---KGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~---~glrV~l~~~~~~ 323 (442)
.+ +.|+|.++.....
T Consensus 82 ~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 82 MPGASSSLVVKFADTDKE 99 (105)
T ss_dssp CTTCSSCCEEEESCSSCC
T ss_pred CCCCCccEEEEECccCcc
Confidence 87 8899999876543
No 28
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=120.24 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=72.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+.+..+.. ..+|||||+|.+.++|++|++.||+..+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH---------LSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEE---------EECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCC---------CCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 578999999999999999999999999999999977543211 13689999999999999999999999999
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.|+|.++.+.
T Consensus 74 g~~l~v~~a~~~ 85 (88)
T 4a8x_A 74 GQEITATAVLAP 85 (88)
T ss_dssp TEECEEEEECCC
T ss_pred CeEEEEEECCCC
Confidence 999999988653
No 29
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=4.4e-15 Score=123.46 Aligned_cols=85 Identities=15% Similarity=0.266 Sum_probs=73.7
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
....++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGM----------HKGCAFLTYCERESALKAQSALHEQK 79 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCS----------CCSEEEEEESSHHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC----------cceEEEEEECCHHHHHHHHHHhcCCc
Confidence 34679999999999999999999999999999999987654332 36899999999999999999999988
Q ss_pred C---CCCceEEEEeecCC
Q 046325 308 N---WRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~---~~~glrV~l~~~~~ 322 (442)
+ .++.|+|.++....
T Consensus 80 ~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 80 TLPGMNRPIQVKPADSES 97 (106)
T ss_dssp CCTTCSSCCEEEECCCCS
T ss_pred ccCCCCceEEEEECCccc
Confidence 7 77889998877543
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.9e-15 Score=123.67 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=74.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++|++.||+..++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK----------HRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCC----------CSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCC----------cceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578999999999999999999999999999999987644332 3689999999999999999999999999
Q ss_pred CCceEEEEeecCCC
Q 046325 310 RKGLRVRVLLRCSP 323 (442)
Q Consensus 310 ~~glrV~l~~~~~~ 323 (442)
++.|+|.++.....
T Consensus 81 g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 81 GRTIRVNLAKPMRI 94 (102)
T ss_dssp TEEEEEEECCCCCC
T ss_pred CcEEEEEeCCCCCC
Confidence 99999998876543
No 31
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.3e-15 Score=122.28 Aligned_cols=83 Identities=22% Similarity=0.191 Sum_probs=73.9
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++|++.||+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQ----------HQGYGFVEFLSEEDADYAIKIMDMIKL 82 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCS----------BCSCEEEEESSHHHHHHHHHHSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc----------CCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 3579999999999999999999999999999999987654322 368999999999999999999999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++...
T Consensus 83 ~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 83 YGKPIRVNKASAH 95 (105)
T ss_dssp SSCBCEEEETTTT
T ss_pred CCeEEEEEECCCC
Confidence 9999999987654
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.58 E-value=5.2e-15 Score=124.94 Aligned_cols=85 Identities=15% Similarity=0.231 Sum_probs=75.4
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++|++.||+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK----------SKGYGFVSFFNKWDAENAIQQMGGQWL 82 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC----------cceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3679999999999999999999999999999999987654322 368999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++..+..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 83 GGRQIRTNWATRKPP 97 (115)
T ss_dssp TTEECEEEESSCCCC
T ss_pred CCEEEEEEEccCCCC
Confidence 999999999876554
No 33
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=6.2e-15 Score=123.51 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=75.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+.+..++. .+|||||+|.+.++|++|+..||+..+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF----------SKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSS----------BCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC----------cceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4679999999999999999999999999999999987654332 368999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
+++.|+|.++..+.+
T Consensus 94 ~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 94 MGQTIQVDWCFVKGP 108 (110)
T ss_dssp TTEECEEEESEESSC
T ss_pred CCcEEEEEEcccCCC
Confidence 999999999876543
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.5e-15 Score=121.28 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=74.7
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++... .++||||+|.+.++|++|++.||+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~------------~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG------------SKGFGFVTFENSADADRAREKLHGTVV 80 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT------------TCCEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC------------CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46799999999999999999999999999999999876431 258999999999999999999999999
Q ss_pred CCCceEEEEeecCCCc
Q 046325 309 WRKGLRVRVLLRCSPK 324 (442)
Q Consensus 309 ~~~glrV~l~~~~~~k 324 (442)
.++.|+|.++..+...
T Consensus 81 ~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 81 EGRKIEVNNATARVMT 96 (103)
T ss_dssp TTEECEEEECCSSCCC
T ss_pred CCEEEEEEEcccCCCC
Confidence 9999999998765543
No 35
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.3e-15 Score=120.71 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=71.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|++.++|++|++.||+..+.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRK----------SKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCC----------CTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC----------cccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 578999999999999999999999999999999987654322 3589999999999999999999999999
Q ss_pred CCceEEEEe
Q 046325 310 RKGLRVRVL 318 (442)
Q Consensus 310 ~~glrV~l~ 318 (442)
++.|+|.++
T Consensus 85 g~~l~v~~a 93 (94)
T 2e5h_A 85 GRVIKASIA 93 (94)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEec
Confidence 988999876
No 36
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.9e-15 Score=122.24 Aligned_cols=83 Identities=23% Similarity=0.288 Sum_probs=74.2
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
.+.++|||.|||.++++++|+++|+.||.|..|+|+.+ +. ..++||||+|.+.++|++|++.||+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g----------~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GG----------RSKGFGFVCFSSPEEATKAVTEMNGRIV 80 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SS----------SEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CC----------CcCEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 46899999999999999999999999999999999875 21 1368999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++..+..
T Consensus 81 ~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 81 ATKPLYVALAQRKEE 95 (103)
T ss_dssp SSSBCEEEECSSCCC
T ss_pred CCcEEEEEEeccccc
Confidence 999999999876543
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.58 E-value=1.7e-15 Score=123.05 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=68.1
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVG--SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G--~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
.+|||+|||.++|+++|+++|+.|| .|..|+|.++..++. .+|||||+|.+.++|++|++.||+..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~----------~kG~afV~f~~~~~a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ----------SKGFALVGVGSEASSKKLMDLLPKRELH 71 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCC----------EEEEEEECC-CHHHHHHHHHHGGGSCSS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCc----------cCcEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 5899999999999999999999999 999999988755432 3689999999999999999999999999
Q ss_pred CCceEEEEeecCCC
Q 046325 310 RKGLRVRVLLRCSP 323 (442)
Q Consensus 310 ~~glrV~l~~~~~~ 323 (442)
++.|+|..+.+..+
T Consensus 72 gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 72 GQNPVVTPSNKLEH 85 (90)
T ss_dssp SCCCEECCC-----
T ss_pred CEEEEEEECCCCcc
Confidence 99999998876543
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.3e-15 Score=122.07 Aligned_cols=82 Identities=22% Similarity=0.241 Sum_probs=73.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++... .+|||||+|.+.++|++|++.||+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~------------~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS------------NDPYCFVEFYEHRDAAAALAAMNGRKI 80 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS------------SCCEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC------------CCCEEEEEECCHHHHHHHHHHhCCCCc
Confidence 46799999999999999999999999999999999886431 258999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++....
T Consensus 81 ~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 81 LGKEVKVNWATTPS 94 (103)
T ss_dssp TTEEEEEEECCCTT
T ss_pred CCCeEEEEECCCCc
Confidence 99999999887643
No 39
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6e-15 Score=124.17 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=71.9
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
+...++|||+|||.++|+++|+++|+.||.|..|+|+++.. +. ++|||||+|++.++|++|+. +++..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~----------~rG~aFV~F~~~e~a~~Ai~-~~~~~ 75 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KA----------FKGSIFVVFDSIESAKKFVE-TPGQK 75 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TS----------CCCEEEEEESSHHHHHHHHT-SSCCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CC----------CccEEEEEECCHHHHHHHHH-cCCCE
Confidence 34679999999999999999999999999999999998754 22 36899999999999999998 89999
Q ss_pred CCCCceEEEEeec
Q 046325 308 NWRKGLRVRVLLR 320 (442)
Q Consensus 308 ~~~~glrV~l~~~ 320 (442)
+.++.|.|.....
T Consensus 76 ~~gr~l~V~~~~~ 88 (103)
T 1s79_A 76 YKETDLLILFKDD 88 (103)
T ss_dssp CTTTTCEEEEHHH
T ss_pred ECCEEEEEEEchH
Confidence 9999999997654
No 40
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=1.8e-15 Score=125.76 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=73.0
Q ss_pred ccceEEcccCCC------CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHh
Q 046325 230 QSCTVVAENLPE------DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL 303 (442)
Q Consensus 230 ~~rTVyV~nLp~------d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~L 303 (442)
..++|||+|||. ++++++|+++|+.||.|..|+|+++..++. .+|||||+|++.++|++|++.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~----------~kG~afV~f~~~~~A~~Ai~~l 74 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGK----------TKGFLFVECGSMNDAKKIIKSF 74 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTE----------ECSEEEEEESSHHHHHHHHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCc----------cceEEEEEECCHHHHHHHHHHh
Confidence 468999999999 999999999999999999999988665432 3689999999999999999999
Q ss_pred cCCcCCC-CceEEEEeec
Q 046325 304 NDERNWR-KGLRVRVLLR 320 (442)
Q Consensus 304 n~~~~~~-~glrV~l~~~ 320 (442)
|+..+.+ +.|+|.++.+
T Consensus 75 ng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 75 HGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp TTCBSSSSCBCEEEESHH
T ss_pred CCcccCCCeEEEEEECch
Confidence 9999998 9999998864
No 41
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=3.1e-15 Score=120.20 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=71.8
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++|+ .||+..+
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~a~-~~~g~~~ 72 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH----------PKGFAYIEFSDKESVRTSL-ALDESLF 72 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSS----------CCEEEEEEESSTHHHHHHG-GGTTCEE
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC----------cceEEEEEECCHHHHHHHH-hcCCCEE
Confidence 3579999999999999999999999999999999987654332 3689999999999999999 9999999
Q ss_pred CCCceEEEEeec
Q 046325 309 WRKGLRVRVLLR 320 (442)
Q Consensus 309 ~~~glrV~l~~~ 320 (442)
.++.|+|..+..
T Consensus 73 ~g~~l~V~~a~~ 84 (89)
T 3ucg_A 73 RGRQIKVIPKRT 84 (89)
T ss_dssp TTEECEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 988899988754
No 42
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=5.4e-15 Score=124.94 Aligned_cols=76 Identities=21% Similarity=0.117 Sum_probs=67.6
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc-
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER- 307 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~- 307 (442)
..+++|||+|||+++|+++|+++|+.||.|.+|+|++. ||||||||++.++|.+|++.|++..
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----------------kg~AFVef~~~~~A~~Av~~ln~~~~ 82 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----------------KRQALVEFEDVLGACNAVNYAADNQI 82 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----------------TTEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----------------CCEEEEEECCHHHHHHHHHHhcCCCc
Confidence 36899999999999999999999999999999999752 5799999999999999999999876
Q ss_pred -CCCCceEEEEeec
Q 046325 308 -NWRKGLRVRVLLR 320 (442)
Q Consensus 308 -~~~~glrV~l~~~ 320 (442)
+.++.|+|.++..
T Consensus 83 ~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 83 YIAGHPAFVNYSTS 96 (100)
T ss_dssp EETTEEEEEEECSC
T ss_pred eeCCcEEEEEeccc
Confidence 5577788887654
No 43
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.57 E-value=4.1e-15 Score=125.73 Aligned_cols=84 Identities=20% Similarity=0.306 Sum_probs=74.2
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++||+.||+..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 92 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNL----------SKCFGFVSYDNPVSAQAAIQSMNGFQI 92 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCS----------EEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCC----------cCccEEEEECCHHHHHHHHHHcCCCEE
Confidence 3578999999999999999999999999999999988654322 368999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++.++.
T Consensus 93 ~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 93 GMKRLKVQLKRSKN 106 (115)
T ss_dssp TTEECEEECCCCSC
T ss_pred CCEEEEEEEcCCCC
Confidence 99999999877544
No 44
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8.8e-15 Score=122.37 Aligned_cols=84 Identities=19% Similarity=0.299 Sum_probs=73.6
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc----
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN---- 304 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln---- 304 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++|++.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~A~~A~~~~~~~~~ 82 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH----------SKGCAFAQFMTQEAAQKCLAAASLEAE 82 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCC----------BCSEEEEEESSHHHHHHHHHHHCTTTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC----------CccEEEEEECCHHHHHHHHHHhccccc
Confidence 3578999999999999999999999999999999987654332 36899999999999999999999
Q ss_pred --CCcCCCCceEEEEeecCC
Q 046325 305 --DERNWRKGLRVRVLLRCS 322 (442)
Q Consensus 305 --~~~~~~~glrV~l~~~~~ 322 (442)
+..+.++.|+|.++..+.
T Consensus 83 ~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 83 GGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp TCCEESSSCEEEEECCCCCC
T ss_pred cCCcEEcCEEEEEEECCCCc
Confidence 888888889988877543
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-15 Score=125.57 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=68.6
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCC--eEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGS--VKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~--V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
.-.||||+|||.++|+++|+++|+.||. |..|+|+++..++. ++|||||+|.+.++|++|++.||+..
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~----------srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ----------NRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS----------CSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC----------CceEeEEEECCHHHHHHHHHHhcCCC
Confidence 4579999999999999999999999995 67999988765443 36899999999999999999999874
Q ss_pred ----CCCCceEEEEee
Q 046325 308 ----NWRKGLRVRVLL 319 (442)
Q Consensus 308 ----~~~~glrV~l~~ 319 (442)
+.++.|+|.++.
T Consensus 78 ~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 78 PPLKIDGKTIGVDFAK 93 (95)
T ss_dssp SCEEETTEEEEEEECC
T ss_pred CCceECCEEEEEEEcc
Confidence 567778888765
No 46
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6e-15 Score=119.85 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=71.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..|.|+++..+.. .+|||||+|++.++|++|++.||+..+.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR----------SRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSS----------EEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCC----------cccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578999999999999999999999999999999987654322 3689999999999999999999999999
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
++.|+|.++.
T Consensus 84 g~~l~v~~a~ 93 (95)
T 2cqc_A 84 GRRIRVSGPS 93 (95)
T ss_dssp TEEEEEECCS
T ss_pred CEEEEEEecC
Confidence 8888888764
No 47
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.1e-15 Score=124.61 Aligned_cols=86 Identities=24% Similarity=0.322 Sum_probs=74.7
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeE--------EEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHH
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVK--------TIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKA 299 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~--------~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kA 299 (442)
....++|||+|||.++++++|+++|+.||.|. .|+|..+..+.. .+|||||+|.+.++|++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~----------~~g~afV~f~~~~~A~~A 81 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGK----------PKGDATVSYEDPPTAKAA 81 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCS----------BCSEEEEEBSSHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCC----------eeeEEEEEECCHHHHHHH
Confidence 44689999999999999999999999999999 699887654332 368999999999999999
Q ss_pred HHHhcCCcCCCCceEEEEeecCCC
Q 046325 300 VEKLNDERNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 300 v~~Ln~~~~~~~glrV~l~~~~~~ 323 (442)
|+.||+..+.++.|+|.++..+..
T Consensus 82 i~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 82 VEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp HHHHTTCEETTEECEEECSSCCCC
T ss_pred HHHcCCCccCCCEEEEEECCCCCC
Confidence 999999999998899988776443
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=123.31 Aligned_cols=77 Identities=21% Similarity=0.113 Sum_probs=68.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc--
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER-- 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~-- 307 (442)
..++|||+|||+++++++|+++|+.||.|..|+|.+. ||||||+|++.++|++|++.|++..
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----------------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----------------KRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----------------TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----------------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 5789999999999999999999999999999998752 4799999999999999999997654
Q ss_pred CCCCceEEEEeecCC
Q 046325 308 NWRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~~~~glrV~l~~~~~ 322 (442)
+.++.|+|.++..+.
T Consensus 78 i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 78 IAGQQAFFNYSTSKR 92 (104)
T ss_dssp SSSSBCEEEECSSSS
T ss_pred ECCEEEEEEEccCcc
Confidence 778889999887543
No 49
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.2e-15 Score=122.45 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=71.1
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||.|||.++++++|+++|+.||.|..|+|..+.. .++||||+|++.++|++|++.||+..+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-------------~~g~afV~f~~~~~A~~A~~~l~g~~~ 86 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-------------GPPFAFVEFEDPRDAEDAVYGRDGYDY 86 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-------------SSCCEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-------------CCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3679999999999999999999999999999999965321 358999999999999999999999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++...
T Consensus 87 ~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 87 DGYRLRVEFPRSG 99 (109)
T ss_dssp TTEECEEECCCCC
T ss_pred CCeEEEEEEcccC
Confidence 9888999887653
No 50
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.8e-15 Score=125.73 Aligned_cols=84 Identities=26% Similarity=0.279 Sum_probs=73.7
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
++...++|||+|||.++++++|+++|+.||.|..|+|+.+..+.. .+|||||+|.+.++|++|| .||+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRR----------SKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSS----------CCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCc----------cCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 345679999999999999999999999999999999987654332 3589999999999999999 99999
Q ss_pred cCCCCceEEEEeecC
Q 046325 307 RNWRKGLRVRVLLRC 321 (442)
Q Consensus 307 ~~~~~glrV~l~~~~ 321 (442)
.+.++.|+|.++..+
T Consensus 90 ~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 90 RLLGVPIIVQASQAE 104 (114)
T ss_dssp EETTEEEEEEEHHHH
T ss_pred EeCCeEEEEEecCCC
Confidence 999998999987653
No 51
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=123.43 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=72.5
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
+...++|||.|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++||+.|++ .
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~Ai~~~~~-~ 82 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGK----------SRGYGFVTMADRAAAERACKDPNP-I 82 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCC----------CCSEEEEEESSHHHHHHHHTCSSC-E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCc----------cceEEEEEECCHHHHHHHHHhCCC-c
Confidence 34679999999999999999999999999999999988654332 368999999999999999999997 7
Q ss_pred CCCCceEEEEeecC
Q 046325 308 NWRKGLRVRVLLRC 321 (442)
Q Consensus 308 ~~~~glrV~l~~~~ 321 (442)
+.++.|+|.++...
T Consensus 83 ~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 83 IDGRKANVNLAYLG 96 (116)
T ss_dssp ETTEECEEEESTTT
T ss_pred CCCEEEEEEEcccC
Confidence 88888999987643
No 52
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.8e-15 Score=126.90 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=67.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC--Cc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND--ER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~--~~ 307 (442)
..++|||+|||+++|+++|+++|+.||.|..|+|+++ ||||||+|++.++|++|++.|++ ..
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----------------kGfaFVeF~~~~~A~~Ai~~l~~~~~~ 78 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----------------KNQAFIEMNTEEAANTMVNYYTSVTPV 78 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----------------TTEEEEEESSHHHHHHHHHHHTTSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----------------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 5789999999999999999999999999999999763 47999999999999999998875 46
Q ss_pred CCCCceEEEEeecCC
Q 046325 308 NWRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~~~~glrV~l~~~~~ 322 (442)
+.++.|+|.++..+.
T Consensus 79 l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 79 LRGQPIYIQFSNHKE 93 (105)
T ss_dssp ETTEECCBCCCSSSS
T ss_pred ECCEEEEEEEcCCCC
Confidence 777888888776543
No 53
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=119.67 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=71.9
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEE--------EEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHH
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKT--------IRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAV 300 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~--------Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv 300 (442)
...++|||+|||.++++++|+++|+.||.|.. |+|..+..++. .+|||||+|.+.++|++|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~----------~~G~afV~f~~~~~a~~Ai 80 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK----------LKGEATVSFDDPPSAKAAI 80 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCS----------EEEEEEEEBSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCC----------eeeEEEEEECCHHHHHHHH
Confidence 35789999999999999999999999999999 99987654332 3689999999999999999
Q ss_pred HHhcCCcCCCCceEEEEe
Q 046325 301 EKLNDERNWRKGLRVRVL 318 (442)
Q Consensus 301 ~~Ln~~~~~~~glrV~l~ 318 (442)
+.||+..+.++.|+|.++
T Consensus 81 ~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 81 DWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHTTCBSSSSBCEEEEC
T ss_pred HHhCCCEeCCcEEEEEec
Confidence 999999999999999876
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6e-15 Score=121.14 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=71.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeE-EEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVK-TIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~-~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||.++++++|+++|+.||.|. .|+|+++..+.. .+|||||+|.+.++|++|++.||+..+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGI----------PAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCC----------EEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCC----------cCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 579999999999999999999999999999 999988654332 368999999999999999999999999
Q ss_pred CCCc----eEEEEeec
Q 046325 309 WRKG----LRVRVLLR 320 (442)
Q Consensus 309 ~~~g----lrV~l~~~ 320 (442)
.++. |+|..+..
T Consensus 78 ~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 78 PGATPAKRFKLNYATY 93 (99)
T ss_dssp SSCSSCEECCEEETTC
T ss_pred CCCCcceeEEEeecCC
Confidence 8888 88877654
No 55
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=121.96 Aligned_cols=77 Identities=26% Similarity=0.270 Sum_probs=69.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..|+|+.+ |||||+|++.++|++||+.||+..+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----------------g~afV~f~~~~~a~~Ai~~l~g~~~~ 76 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----------------GTGVVEFVRKEDMTYAVRKLDNTKFR 76 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----------------TEEEEEESSHHHHHHHHHHSSSEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----------------CEEEEEECCHHHHHHHHHHHCcCCcc
Confidence 4789999999999999999999999999999999763 59999999999999999999999988
Q ss_pred C-----CceEEEEeecCCC
Q 046325 310 R-----KGLRVRVLLRCSP 323 (442)
Q Consensus 310 ~-----~glrV~l~~~~~~ 323 (442)
+ +.|+|.++.++..
T Consensus 77 g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 77 SHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp CTTSCEEEEEEEESSCCSC
T ss_pred CCcCcceEEEEEeCCCCCC
Confidence 7 7788888876543
No 56
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.56 E-value=2e-14 Score=149.50 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=74.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++|+++|+++|+.||.|+.|.|+.+..++. .+|||||+|.+.++|++||..||+..+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~----------~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGK----------PRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCC----------ccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 568999999999999999999999999999999987654332 3689999999999999999999999999
Q ss_pred CCceEEEEeecCCC
Q 046325 310 RKGLRVRVLLRCSP 323 (442)
Q Consensus 310 ~~glrV~l~~~~~~ 323 (442)
+..|.|.++.....
T Consensus 171 gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 171 GRRVLVDVERGRTV 184 (437)
T ss_pred CEEEEEEEeCCCCC
Confidence 99999999875443
No 57
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=121.30 Aligned_cols=85 Identities=24% Similarity=0.324 Sum_probs=72.9
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCC-CCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPES-NSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~-~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||.++++++|+++|+.||.|..|+|.++... ++. ..+|||||+|.+.++|++|++.||+..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~--------~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVL--------LSMGFGFVEYKKPEQAQKALKQLQGHTV 75 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCE--------EEEEEEEEEESSHHHHHHHHHHSTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCc--------CcccEEEEEECCHHHHHHHHHHhCCCee
Confidence 5789999999999999999999999999999999875431 011 1368999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++....
T Consensus 76 ~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 76 DGHKLEVRISERAT 89 (98)
T ss_dssp TTEECEEECSSCSS
T ss_pred CCeEEEEEEccCCC
Confidence 98889998876543
No 58
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.2e-15 Score=120.26 Aligned_cols=81 Identities=23% Similarity=0.263 Sum_probs=72.7
Q ss_pred ccceEEcccCCCCCCHHHHH----HHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 230 QSCTVVAENLPEDHSHQNLE----KIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~Lk----elFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
..++|||+|||.++++++|+ ++|+.||.|..|+|+.+..+ ++||||+|++.++|++|++.||+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-------------rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-------------QLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-------------TCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-------------CeEEEEEECCHHHHHHHHHHhCC
Confidence 46899999999999999999 99999999999999876432 47999999999999999999999
Q ss_pred CcCCCCceEEEEeecCCC
Q 046325 306 ERNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 306 ~~~~~~glrV~l~~~~~~ 323 (442)
..+.++.|+|.++.....
T Consensus 75 ~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 75 YKIGSKKILVSLATGASG 92 (96)
T ss_dssp EEETTEEEEEEECCCSSC
T ss_pred CEECCeEEEEEEcCCCCC
Confidence 999999999999876543
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=123.02 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=74.0
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~F~~~~~A~~Ai~~l~g~~i 93 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR----------SKGYGFITFSDSECAKKALEQLNGFEL 93 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTE----------EEEEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc----------cceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4579999999999999999999999999999999987644322 368999999999999999999999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++..+
T Consensus 94 ~g~~l~V~~a~~k 106 (108)
T 2jrs_A 94 AGRPMKVGHVTER 106 (108)
T ss_dssp SSSCCEEECSCSS
T ss_pred CCEEEEEEEcccC
Confidence 9999999987754
No 60
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.56 E-value=6.8e-15 Score=125.80 Aligned_cols=86 Identities=22% Similarity=0.264 Sum_probs=74.3
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
.....++|||+|||.++|+++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|+ .||+.
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~-~l~g~ 100 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGH----------PKGYAYIEFAERNSVDAAV-AMDET 100 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSS----------CEEEEEEEESSHHHHHHHH-TTTTC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC----------cccEEEEEECCHHHHHHHH-hcCCC
Confidence 345679999999999999999999999999999999987644322 3689999999999999999 89999
Q ss_pred cCCCCceEEEEeecCCC
Q 046325 307 RNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 307 ~~~~~glrV~l~~~~~~ 323 (442)
.+.++.|+|.++....+
T Consensus 101 ~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 101 VFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp EETTEECEEEESSCCCS
T ss_pred eECCeEEEEEECCCCCC
Confidence 99999999998765433
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=1.3e-14 Score=117.34 Aligned_cols=81 Identities=26% Similarity=0.374 Sum_probs=72.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|.++ +. ..+|||||+|.+.++|++|++.||+..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g----------~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NG----------KSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SS----------CEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CC----------CcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5789999999999999999999999999999999863 11 13689999999999999999999999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|+|.++....
T Consensus 75 g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 75 GREIDVRIDRNAS 87 (92)
T ss_dssp TBCCCCEECSCCS
T ss_pred CcEEEEEEcCCCC
Confidence 9999999887543
No 62
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-14 Score=120.70 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=74.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+++.. . ..++||||+|.+.++|++|++.||+..+.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g----------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-G----------KSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-C----------SEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C----------CeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 578999999999999999999999999999999987642 1 13689999999999999999999999999
Q ss_pred CCceEEEEeecCCCc
Q 046325 310 RKGLRVRVLLRCSPK 324 (442)
Q Consensus 310 ~~glrV~l~~~~~~k 324 (442)
++.|+|.++....++
T Consensus 83 g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 83 DRPMHVKMDERALPK 97 (114)
T ss_dssp TEECEEEECSCCCCC
T ss_pred CCEEEEEEcccCCCC
Confidence 999999998754443
No 63
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.56 E-value=8.1e-15 Score=119.28 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=70.9
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..|+|+++.. + ..+|||||+|++.++|++|++.||+..+.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g----------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-G----------KPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S----------CEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-C----------CCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 579999999999999999999999999999999987643 1 13689999999999999999999999999
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
++.|+|.++.
T Consensus 84 g~~l~V~~a~ 93 (95)
T 2ywk_A 84 GRPINVSGPS 93 (95)
T ss_dssp TEECEEECCC
T ss_pred CCEEEEEEcC
Confidence 8888888764
No 64
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=126.58 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=70.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC--Cc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND--ER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~--~~ 307 (442)
..++|||+|||+++++++|+++|+.||.|..|+|+++ ||||||+|++.++|++|++.|++ ..
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----------------kG~AFVeF~~~e~A~~Ai~~l~~~~~~ 93 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----------------KNQAFIEMNTEEAANTMVNYYTSVTPV 93 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----------------GTEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----------------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 5789999999999999999999999999999999762 57999999999999999999985 46
Q ss_pred CCCCceEEEEeecCCCc
Q 046325 308 NWRKGLRVRVLLRCSPK 324 (442)
Q Consensus 308 ~~~~glrV~l~~~~~~k 324 (442)
+.++.|+|.++..+..+
T Consensus 94 l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 94 LRGQPIYIQFSNHKELK 110 (119)
T ss_dssp BTTBCCEEEECSSSSCC
T ss_pred ECCeEEEEEEccCCCCC
Confidence 78889999998765443
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=1.1e-14 Score=127.14 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=74.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||.|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++||+.||+..+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~----------~~G~afV~F~~~~~A~~Ai~~lng~~i 113 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR----------SRGFAFVYFENVDDAKEAKERANGMEL 113 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSC----------CCCEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc----------cceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3579999999999999999999999999999999988654332 368999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++..+.
T Consensus 114 ~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 114 DGRRIRVDFSITKR 127 (129)
T ss_dssp SSSCCEESCCSSSS
T ss_pred CCEEEEEEEecCCC
Confidence 99999998876543
No 66
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.6e-15 Score=122.20 Aligned_cols=84 Identities=25% Similarity=0.333 Sum_probs=74.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK----------PKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTE----------EEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCc----------cceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 579999999999999999999999999999999987654322 3689999999999999999999999999
Q ss_pred CCceEEEEeecCCC
Q 046325 310 RKGLRVRVLLRCSP 323 (442)
Q Consensus 310 ~~glrV~l~~~~~~ 323 (442)
++.|+|.++.....
T Consensus 77 g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 77 GRALRVDNAASEKN 90 (104)
T ss_dssp SSCBEEEETTCTTH
T ss_pred CcEEEEEeCCCccc
Confidence 99999999875443
No 67
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=1.5e-14 Score=120.20 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=69.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++|+++|+++|+.||.|..|+|++ +||||+|++.++|++|++.||+..+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------------------~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------------------DYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------------------SCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------------------CEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 568999999999999999999999999999999853 59999999999999999999999999
Q ss_pred CCceEEEEeecCCC
Q 046325 310 RKGLRVRVLLRCSP 323 (442)
Q Consensus 310 ~~glrV~l~~~~~~ 323 (442)
++.|+|.++..+..
T Consensus 72 g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 72 GENIEIVFAKPPDQ 85 (103)
T ss_dssp TEEEEEEECCCCCC
T ss_pred CCEEEEEEcCCCcc
Confidence 99999999876544
No 68
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=117.93 Aligned_cols=77 Identities=25% Similarity=0.264 Sum_probs=70.0
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..|.|... ++||||+|.+.++|++|++.||+..+.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----------------~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----------------DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----------------SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----------------CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 5789999999999999999999999999999998642 479999999999999999999999998
Q ss_pred --CCceEEEEeecCC
Q 046325 310 --RKGLRVRVLLRCS 322 (442)
Q Consensus 310 --~~glrV~l~~~~~ 322 (442)
++.|+|.++..+.
T Consensus 80 ~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 80 GPDRRLRVDFAKSGP 94 (97)
T ss_dssp SSSCBCEEEECCCCC
T ss_pred CCCcEEEEEECCCCC
Confidence 8889999887643
No 69
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=6.2e-15 Score=124.59 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=74.9
Q ss_pred cccceEEcccCCCCCCHHHHH---HHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLE---KIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~Lk---elFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
.+.++|||+|||.++++++|+ ++|++||.|..|+|.++.....++ ..+|||||+|++.++|++||+.||+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~-------~~~G~afV~f~~~~~A~~Ai~~lng 85 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQ-------GPSASAYVTYIRSEDALRAIQCVNN 85 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSS-------CCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccC-------CCCeEEEEEECcHHHHHHHHHHhCC
Confidence 467899999999999999999 999999999999998765432221 1358999999999999999999999
Q ss_pred CcCCCCceEEEEeecCC
Q 046325 306 ERNWRKGLRVRVLLRCS 322 (442)
Q Consensus 306 ~~~~~~glrV~l~~~~~ 322 (442)
..+.++.|+|.++.++.
T Consensus 86 ~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 86 VVVDGRTLKASLGTTKY 102 (111)
T ss_dssp EEETTEEEEEESCCCCS
T ss_pred CEECCEEEEEEeccccc
Confidence 99999999998877654
No 70
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=120.41 Aligned_cols=82 Identities=24% Similarity=0.339 Sum_probs=72.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCC-CCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPES-NSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~-~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||.|||.++++++|+++|+.|| |..|+|+++..+ .. .+|||||+|.+.++|++|| .||+..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~----------~~g~afV~f~~~~~a~~A~-~l~g~~~ 81 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPER----------LKGFGYAEFEDLDSLLSAL-SLNEESL 81 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTS----------BCSCEEEEESSHHHHHHHH-GGGTCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCC----------cCeEEEEEECCHHHHHHHH-hcCCCEe
Confidence 579999999999999999999999999 999999876543 21 3689999999999999999 9999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++..+..
T Consensus 82 ~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 82 GNKRIRVDVADQAQD 96 (104)
T ss_dssp TTEECEEEECCCCCC
T ss_pred CCcEEEEEEccCCCC
Confidence 999999998876443
No 71
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.55 E-value=1.6e-14 Score=120.26 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=71.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..|+|+++. ++ ..+|||||+|.+.++|++|++.||+..+.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g----------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SG----------RSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TS----------CEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC----------CcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 57899999999999999999999999999999998765 22 13689999999999999999999999999
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
++.|+|.++.
T Consensus 97 g~~l~V~~a~ 106 (107)
T 3ulh_A 97 GRPMNIQLVT 106 (107)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEeC
Confidence 9999998864
No 72
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=7.6e-15 Score=124.46 Aligned_cols=81 Identities=20% Similarity=0.365 Sum_probs=71.9
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
....++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~----------~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSL----------SKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSC----------CCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC----------cCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 34679999999999999999999999999999999987654322 36899999999999999999999999
Q ss_pred CCCCceEEEEe
Q 046325 308 NWRKGLRVRVL 318 (442)
Q Consensus 308 ~~~~glrV~l~ 318 (442)
+.++.|+|.++
T Consensus 107 ~~g~~l~V~~a 117 (118)
T 2khc_A 107 VGTKRLKVQLK 117 (118)
T ss_dssp ETTEECCEEEC
T ss_pred ECCEEEEEEec
Confidence 99888988875
No 73
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-14 Score=115.54 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=69.9
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|++ +||||+|.+.++|++|++.||+..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------------------g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK------------------NYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET------------------TEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC------------------CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 578999999999999999999999999999999862 69999999999999999999999999
Q ss_pred CCceEEEEeecCCC
Q 046325 310 RKGLRVRVLLRCSP 323 (442)
Q Consensus 310 ~~glrV~l~~~~~~ 323 (442)
++.|+|.++..+..
T Consensus 69 g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 69 GVNINVEASKNKSK 82 (90)
T ss_dssp SCBCEEECSSCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999998875443
No 74
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=5.9e-15 Score=124.74 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=67.6
Q ss_pred ccceEEcccCCC-CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc-
Q 046325 230 QSCTVVAENLPE-DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER- 307 (442)
Q Consensus 230 ~~rTVyV~nLp~-d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~- 307 (442)
..++|||+|||+ ++|+++|+++|+.||.|..|+|+++ ++||||||++.++|++||+.||+..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~----------------kg~aFVef~~~~~A~~Ai~~l~~~~~ 77 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK----------------INEAFIEMATTEDAQAAVDYYTTTPA 77 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS----------------SSCEEEEESSHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC----------------CCEEEEEECCHHHHHHHHHHHcCCCc
Confidence 578999999999 9999999999999999999999753 4699999999999999999999754
Q ss_pred -CCCCceEEEEeec
Q 046325 308 -NWRKGLRVRVLLR 320 (442)
Q Consensus 308 -~~~~glrV~l~~~ 320 (442)
+.++.|+|.++..
T Consensus 78 ~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 78 LVFGKPVRVHLSQK 91 (102)
T ss_dssp EETTEECEEEEECC
T ss_pred eECCcEEEEEECCC
Confidence 7788899998874
No 75
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=121.24 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=69.0
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc--CCc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN--DER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln--~~~ 307 (442)
..++|||+|||+++++++|+++|+.||.|..|+|+++ ||||||+|++.++|++|++.|+ +..
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----------------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----------------KNQAFLELATEEAAITMVNYYSAVTPH 77 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----------------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----------------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 5789999999999999999999999999999998763 4799999999999999999885 455
Q ss_pred CCCCceEEEEeecCCCc
Q 046325 308 NWRKGLRVRVLLRCSPK 324 (442)
Q Consensus 308 ~~~~glrV~l~~~~~~k 324 (442)
+.++.|+|.++..+..+
T Consensus 78 ~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 78 LRNQPIYIQYSNHKELK 94 (101)
T ss_dssp ETTEECEEEECSCSSCC
T ss_pred ECCcEEEEEEcCcccCc
Confidence 77888999988754443
No 76
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.2e-14 Score=117.82 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=69.7
Q ss_pred cccceEEcccCCC-CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 229 LQSCTVVAENLPE-DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 229 ~~~rTVyV~nLp~-d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
...++|||+|||. ++++++|+++|+.||.|..|+|. +|||||+|.+.++|++|++.||+..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------------------~g~afV~f~~~~~A~~A~~~l~g~~ 69 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------------------NAFGFIQFDNPQSVRDAIECESQEM 69 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------------------TTEEEEEESCHHHHHHHHHHHTCSS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------------------CCEEEEEECCHHHHHHHHHHcCCCe
Confidence 3578999999998 99999999999999999999984 3799999999999999999999999
Q ss_pred CCCCceEEEEeecCC
Q 046325 308 NWRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~~~~glrV~l~~~~~ 322 (442)
+.++.|+|.++....
T Consensus 70 ~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 70 NFGKKLILEVSSSNA 84 (96)
T ss_dssp CBTTTBCEEEEECCC
T ss_pred eCCcEEEEEEcCcCC
Confidence 999999999987644
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=119.34 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=72.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhc-CCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc-
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGV-VGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER- 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~-~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~- 307 (442)
..++|||+|||.++++++|+++|+. ||.|..|+|+++. ++. .+|||||+|.+.++|++|++.||+..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 76 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGV----------SKGYGFVKFTDELEQKRALTECQGAVG 76 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCC----------EEEEEEEEESCHHHHHHHHHHTTTCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCC----------ccceEEEEECCHHHHHHHHHHccCCcc
Confidence 5789999999999999999999999 9999999998865 321 36899999999999999999999998
Q ss_pred CCCCceEEEEeecCC
Q 046325 308 NWRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~~~~glrV~l~~~~~ 322 (442)
+.++.|+|.++..+.
T Consensus 77 ~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 77 LGSKPVRLSVAIPKA 91 (104)
T ss_dssp SSSSCCCCCBCCCCC
T ss_pred cCCEeEEEEEccCCC
Confidence 888889988876543
No 78
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.54 E-value=1.8e-14 Score=115.60 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=68.1
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
+...++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++ +++..
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~a~~A~~-~~~~~ 76 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR----------SRGFGFILFKDAASVEKVLD-QKEHR 76 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC----------EEEEEEEEESSTHHHHHHHH-SSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCc----------cccEEEEEECCHHHHHHHHH-hCCCE
Confidence 34679999999999999999999999999999999987654332 36899999999999999995 57777
Q ss_pred CCCCceEEEEe
Q 046325 308 NWRKGLRVRVL 318 (442)
Q Consensus 308 ~~~~glrV~l~ 318 (442)
+.++.|+|+.+
T Consensus 77 ~~g~~i~v~~A 87 (87)
T 3s7r_A 77 LDGRVIDPKKA 87 (87)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCEEEEEEeC
Confidence 88777877753
No 79
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=118.56 Aligned_cols=79 Identities=25% Similarity=0.338 Sum_probs=71.9
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|.++ ++||||+|.+.++|++|++.||+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----------------kg~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----------------KGFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----------------TTEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----------------CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 35789999999999999999999999999999999753 47999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++.....
T Consensus 77 ~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 77 RGKQLRVRFACHSAS 91 (99)
T ss_dssp TTBCCEEEESSCCSC
T ss_pred CCceEEEEEcCCCCC
Confidence 999999999876443
No 80
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=2.3e-14 Score=118.83 Aligned_cols=81 Identities=19% Similarity=0.316 Sum_probs=71.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.|| |..|+|+++..+.. .+|||||+|++.++|++|+ .||+..+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~----------~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDK----------FKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCS----------EEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCc----------cceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 578999999999999999999999997 99999988754332 3689999999999999999 89999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|+|.++..+.
T Consensus 82 g~~l~V~~a~~~~ 94 (103)
T 2dng_A 82 DRSLRVDIAEGRK 94 (103)
T ss_dssp TEECEEEECCCCC
T ss_pred CeEEEEEEecCCC
Confidence 9999999887544
No 81
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=116.22 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=69.7
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|.+ +||||+|++.++|++|++.||+..+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------------------~~afV~f~~~~~a~~A~~~l~g~~~ 69 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------------------DYAFVHMERAEDAVEAIRGLDNTEF 69 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------------------SEEEEEESCHHHHHHHHHHHTTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------------------CEEEEEECCHHHHHHHHHHhCCCee
Confidence 3679999999999999999999999999999999853 5999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++..+.
T Consensus 70 ~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 70 QGKRMHVQLSTSRL 83 (92)
T ss_dssp TTEEEEEEESSCCC
T ss_pred CCcEEEEEEccCCC
Confidence 99999999887543
No 82
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=120.81 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=70.9
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|++ .++||||+|.+.++|++|++.||+..+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----------------~~g~afV~f~~~~~A~~Ai~~l~g~~~ 71 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----------------GGITAIVEFLEPLEARKAFRHLAYSKF 71 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----------------SSSCEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----------------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3578999999999999999999999999999999864 147999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++....
T Consensus 72 ~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 72 HHVPLYLEWAPIGV 85 (111)
T ss_dssp SSSBCEEEEEETTT
T ss_pred CCeEEEEEECCCCc
Confidence 99999999987543
No 83
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-14 Score=122.39 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=73.1
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
....++|||+|||.++++++|+++|+.||.|..|+|+++.. ..+|||||+|.+.++|++|++.||+..
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~------------~~kg~afV~f~~~~~A~~Ai~~l~g~~ 93 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER------------GSKGFGFVTFENSADADRAREKLHGTV 93 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT------------BCTTEEEEECCCSHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC------------CCceEEEEEECCHHHHHHHHHHcCCCE
Confidence 34679999999999999999999999999999999987532 136899999999999999999999999
Q ss_pred CCCCceEEEEeecC
Q 046325 308 NWRKGLRVRVLLRC 321 (442)
Q Consensus 308 ~~~~glrV~l~~~~ 321 (442)
+.++.|+|.++..+
T Consensus 94 ~~g~~l~V~~a~~~ 107 (109)
T 2err_A 94 VEGRKIEVNNATAR 107 (109)
T ss_dssp ETTEECEEEECCCS
T ss_pred ECCEEEEEEECCCC
Confidence 99999999987654
No 84
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=113.94 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=67.7
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRK 311 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~ 311 (442)
++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.++ ..+.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~a~~~~~-~~~~g~ 69 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR----------SRGFGFVTFMDQAGVDKVLAQSR-HELDSK 69 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSS----------CSSEEEECCCCTTHHHHHHHTTT-CCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCC----------cCceEEEEEcCHHHHHHHHHhCC-CccCCE
Confidence 5899999999999999999999999999999988654332 35899999999999999999999 888888
Q ss_pred ceEEEEe
Q 046325 312 GLRVRVL 318 (442)
Q Consensus 312 glrV~l~ 318 (442)
.|+|+.+
T Consensus 70 ~l~v~~a 76 (77)
T 1uaw_A 70 TIDPKVA 76 (77)
T ss_dssp CCEEEEC
T ss_pred EEEEEec
Confidence 8999875
No 85
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.53 E-value=2.3e-14 Score=120.95 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=70.1
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.++ ..+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~----------~kg~afV~f~~~~~A~~Ai~~~~-~~l 91 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR----------SRGFGFVTFMDQAGVDKVLAQSR-HEL 91 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCC----------CTTCEEEEESSHHHHHHHHHSSC-EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCC----------cCcEEEEEECCHHHHHHHHHHCC-CcC
Confidence 4679999999999999999999999999999999988654332 36899999999999999998764 777
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++..+..
T Consensus 92 ~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 92 DSKTIDPKVAFPRRA 106 (109)
T ss_dssp TTEEEEEEECCCCCC
T ss_pred CCEEEEEEEccCCCC
Confidence 888899988875543
No 86
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.5e-14 Score=119.60 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=71.5
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||.|||.++++++|+++|+.||.|..|+|+++. +. ..+|||||+|.+.++|++|++.||+..+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g----------~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SG----------TSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SS----------CEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CC----------CcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 467899999999999999999999999999999998864 22 1368999999999999999999999988
Q ss_pred --------CCCceEEEEeec
Q 046325 309 --------WRKGLRVRVLLR 320 (442)
Q Consensus 309 --------~~~glrV~l~~~ 320 (442)
+++.|.|+++.+
T Consensus 92 ~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 92 KTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCTTSCCCSSCBEEEECCC
T ss_pred cCCccccCCCCceeEEccCC
Confidence 577899988774
No 87
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=115.46 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=69.9
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|.+ +||||+|.+.++|++|++.||+..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------------------~~afV~f~~~~~a~~A~~~l~g~~~ 68 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------------------DYAFVHMEKEADAKAAIAQLNGKEV 68 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------------------SCEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------------------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578999999999999999999999999999999963 4999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++....
T Consensus 69 ~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 69 KGKRINVELSTKGQ 82 (90)
T ss_dssp TTEECEEEESCCCC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999987653
No 88
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=3.7e-14 Score=120.83 Aligned_cols=68 Identities=22% Similarity=0.232 Sum_probs=61.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..|.|+.+ |||||+|++.++|++||+.||+..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----------------g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----------------GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----------------SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----------------CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4689999999999999999999999999999999653 59999999999999999999999998
Q ss_pred CCceE
Q 046325 310 RKGLR 314 (442)
Q Consensus 310 ~~glr 314 (442)
++.|+
T Consensus 78 gr~~~ 82 (115)
T 3beg_B 78 SHEGE 82 (115)
T ss_dssp CTTSC
T ss_pred CcEee
Confidence 87733
No 89
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=124.00 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=68.1
Q ss_pred ccceEEcccCCCC-CCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC--
Q 046325 230 QSCTVVAENLPED-HSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE-- 306 (442)
Q Consensus 230 ~~rTVyV~nLp~d-~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~-- 306 (442)
..++|||+|||++ +++++|+++|+.||.|..|+|.+. ||||||||++.++|++|++.|++.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----------------kg~aFVef~~~~~A~~Ai~~l~~~~~ 87 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----------------KSQAFIEMETREDAMAMVDHCLKKAL 87 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----------------TTEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----------------CCEEEEEECCHHHHHHHHHHhccCCc
Confidence 5789999999998 999999999999999999999652 579999999999999999999754
Q ss_pred cCCCCceEEEEeecCC
Q 046325 307 RNWRKGLRVRVLLRCS 322 (442)
Q Consensus 307 ~~~~~glrV~l~~~~~ 322 (442)
.+.++.|+|.++..+.
T Consensus 88 ~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 88 WFQGRCVKVDLSEKYK 103 (112)
T ss_dssp CSSSSCCEEEEECSCS
T ss_pred eECCEEEEEEECcccc
Confidence 4778889999986543
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.9e-14 Score=119.12 Aligned_cols=73 Identities=19% Similarity=0.125 Sum_probs=68.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
.+..|||+||++.+|+++|+++|.+||+|.++.|.. .||||||||.++++|++|++.||+..+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----------------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~ 69 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----------------NQGIALCKYTTREEANKAQMALNNCVLA 69 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----------------TTTEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----------------CCcEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 467899999999999999999999999999999865 2589999999999999999999999999
Q ss_pred CCceEEEEe
Q 046325 310 RKGLRVRVL 318 (442)
Q Consensus 310 ~~glrV~l~ 318 (442)
++.|+|.++
T Consensus 70 gr~I~V~~A 78 (89)
T 2wbr_A 70 NTTIFAESP 78 (89)
T ss_dssp TEEEEEECC
T ss_pred CcEEEEEEC
Confidence 999999987
No 91
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=117.26 Aligned_cols=76 Identities=26% Similarity=0.312 Sum_probs=70.0
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRK 311 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~ 311 (442)
++|||+|||.++|+++|+++|+.||.|..|+|.++ .+|||||+|++.++|++|++.||+..+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 65 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---------------PPGFAFVEFEDPRDAEDAVRGLDGKVICGS 65 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---------------SSSEEEEECSSHHHHHHHHHHHHHSCSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---------------CCCEEEEEECCHHHHHHHHHHHCCCeECCc
Confidence 58999999999999999999999999999999874 147999999999999999999999999999
Q ss_pred ceEEEEeecCC
Q 046325 312 GLRVRVLLRCS 322 (442)
Q Consensus 312 glrV~l~~~~~ 322 (442)
.|+|.++....
T Consensus 66 ~l~V~~a~~~~ 76 (101)
T 2hvz_A 66 RVRVELSTGMP 76 (101)
T ss_dssp CCEEEESSSCC
T ss_pred EEEEEEccCCC
Confidence 99999987654
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.3e-14 Score=118.70 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=71.5
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCC-eEEEEEe-CCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc--C
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGS-VKTIRIC-HPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN--D 305 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~-V~~Vri~-r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln--~ 305 (442)
..++|||+|||.++++++|+++|+.||. |..|.|+ .+..++. .+|||||+|.+.++|++|++.|+ +
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~----------~~g~afV~f~~~~~A~~A~~~l~~g~ 76 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMK----------NRGFAFVEYESHRAAAMARRKLMPGR 76 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTT----------TCCEEEEEESSHHHHHHHHTTTTTCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCC----------cCcEEEEEecCHHHHHHHHHHhhCCC
Confidence 5789999999999999999999999998 9999987 4443222 36899999999999999999996 5
Q ss_pred CcCCCCceEEEEeecCC
Q 046325 306 ERNWRKGLRVRVLLRCS 322 (442)
Q Consensus 306 ~~~~~~glrV~l~~~~~ 322 (442)
..++++.|+|.++.++.
T Consensus 77 ~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 77 IQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp SCBTTBCCEEEESCSSC
T ss_pred ceecCCeEEEEEcCCCC
Confidence 78888999999987543
No 93
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=113.99 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=67.4
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHh-cCCc
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL-NDER 307 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~L-n~~~ 307 (442)
...++|||+|||.++++++|+++|+.||.|..|+|.++ +|||||+|++.++|++|++.| ++..
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----------------kg~afV~f~~~~~A~~a~~~l~~~~~ 73 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----------------QQCAFIQFATRQAAEVAAEKSFNKLI 73 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----------------GTEEEEEESSHHHHHHHHHTTTTTCE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----------------CCEEEEEECCHHHHHHHHHHhcCCee
Confidence 35789999999999999999999999999999999752 579999999999999999999 8888
Q ss_pred CCCCceEEEEe
Q 046325 308 NWRKGLRVRVL 318 (442)
Q Consensus 308 ~~~~glrV~l~ 318 (442)
+.++.|+|.++
T Consensus 74 ~~g~~l~v~~a 84 (85)
T 2ytc_A 74 VNGRRLNVKWG 84 (85)
T ss_dssp ETTEECCEEEC
T ss_pred ECCCEEEEEec
Confidence 88888888775
No 94
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.51 E-value=3.6e-14 Score=127.88 Aligned_cols=86 Identities=23% Similarity=0.293 Sum_probs=74.9
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|.|+.+..++. .+|||||+|.+.++|++||..||+..+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF----------SKGYALVEYETHKQALAAKEALNGAEI 139 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS----------EEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCc----------EeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578999999999999999999999999999999987654332 368999999999999999999999999
Q ss_pred CCCceEEEEeecCCCc
Q 046325 309 WRKGLRVRVLLRCSPK 324 (442)
Q Consensus 309 ~~~glrV~l~~~~~~k 324 (442)
.++.|+|.++....++
T Consensus 140 ~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 140 MGQTIQVDWCFVKGPK 155 (165)
T ss_dssp TTEECEEEESEECC--
T ss_pred CCEEEEEEEecCCCCC
Confidence 9999999998876654
No 95
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=121.34 Aligned_cols=84 Identities=11% Similarity=0.126 Sum_probs=72.1
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
....++|||.|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|.+.++|++||+. ++..
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~a~~Ai~~-~~~~ 92 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR----------SRGFGFVTFSSMAEVDAAMAA-RPHS 92 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSS----------CCSEEEEECSSHHHHHHHHTS-CSEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCC----------cCceEEEEeCCHHHHHHHHHh-CCcE
Confidence 34579999999999999999999999999999999988754332 368999999999999999987 8888
Q ss_pred CCCCceEEEEeecCC
Q 046325 308 NWRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~~~~glrV~l~~~~~ 322 (442)
+.++.|+|.++..+.
T Consensus 93 ~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 93 IDGRVVEPKRAVARE 107 (116)
T ss_dssp ETTEEEEEECCSSCC
T ss_pred ECCEEEEEEECCCCc
Confidence 888888888876543
No 96
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=114.76 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=63.7
Q ss_pred cceEEcccCCCCC------CHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 231 SCTVVAENLPEDH------SHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 231 ~rTVyV~nLp~d~------T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
+++|||+|||.++ ++++|+++|+.||.|..|+|++ .++ ..+|||||+|++.++|++|++.||
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g----------~~~g~afV~f~~~~~A~~Ai~~ln 68 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG----------KTKGYIFLEYASPAHAVDAVKNAD 68 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTT----------BCCCEEEEEESSHHHHHHHHTTSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCC----------cEeEEEEEEECCHHHHHHHHHHhc
Confidence 4799999999999 7899999999999999999873 222 136899999999999999999999
Q ss_pred CCcCCCC-ceEE
Q 046325 305 DERNWRK-GLRV 315 (442)
Q Consensus 305 ~~~~~~~-glrV 315 (442)
+..+.++ .|+|
T Consensus 69 g~~~~g~~~l~V 80 (81)
T 2krb_A 69 GYKLDKQHTFRV 80 (81)
T ss_dssp SCCCSSSSCCCC
T ss_pred CcccCCceeEEe
Confidence 9999887 7766
No 97
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.3e-14 Score=119.21 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=71.7
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
....++|||+|||.++++++|+++|+.||.|..|+|+++ +|||||+|.+.++|++|++.||+..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------~g~afV~f~~~~~a~~A~~~l~g~~ 85 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----------------KGYSFVRFSTHESAAHAIVSVNGTT 85 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----------------TTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----------------CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 446789999999999999999999999999999999764 4799999999999999999999999
Q ss_pred CCCCceEEEEeecCC
Q 046325 308 NWRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~~~~glrV~l~~~~~ 322 (442)
+.++.|+|.++....
T Consensus 86 ~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 86 IEGHVVKCYWGKESP 100 (109)
T ss_dssp ETTEECEEECCCCCC
T ss_pred ECCcEEEEEecCCCC
Confidence 999889999877544
No 98
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.51 E-value=5.7e-14 Score=120.37 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=73.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+++. ++. .+|||||+|.+.++|++|++.||+..+.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGR----------SLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSS----------CCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCC----------EeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 56899999999999999999999999999999998865 221 3589999999999999999999999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|+|.++....
T Consensus 103 g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 103 GRPMDIQLVASQI 115 (124)
T ss_dssp SCEEEEEEECCTT
T ss_pred CcEEEEEEeCCCC
Confidence 9999999987643
No 99
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=116.76 Aligned_cols=78 Identities=26% Similarity=0.342 Sum_probs=68.9
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|. +++.... .+|||||+|.+.++|++|++.||+..+.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~--------------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG--------------PRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET--------------TTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC--------------CCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578999999999999999999999999996 6665321 3589999999999999999999999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|+|.++..+.
T Consensus 83 g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 83 TDTLRVALARQQR 95 (97)
T ss_dssp SSCCEEEECCCCC
T ss_pred CcEEEEEEcCCCC
Confidence 9999999987543
No 100
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.51 E-value=3.3e-14 Score=128.23 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=72.5
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVG--SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G--~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
..++|||+|||.++|+++|+++|+.|| .|..|+|+.+..++. .+|||||+|.+.++|++||+.||+..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~----------skGfaFV~f~~~~~A~~Ai~~lng~~ 123 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQ----------SKGYAEVVVASENSVHKLLELLPGKV 123 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCC----------EEEEEEEEESCHHHHHHHHHHSTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCc----------cceEEEEEECCHHHHHHHHHHcCCCE
Confidence 468999999999999999999999999 999999988755432 36899999999999999999999999
Q ss_pred CCCCceEEEEeecC
Q 046325 308 NWRKGLRVRVLLRC 321 (442)
Q Consensus 308 ~~~~glrV~l~~~~ 321 (442)
+.++.|+|..+.+.
T Consensus 124 ~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 124 LNGEKVDVRPATRQ 137 (156)
T ss_dssp ETTEECEEEECCHH
T ss_pred ECCeEeEEEEcCCC
Confidence 99999999987653
No 101
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.51 E-value=4.9e-14 Score=125.14 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=75.0
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 137 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE----------SRGFAFVRFHDKRDAEDAMDAMDGAVL 137 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTT----------SCCEEEEEESBHHHHHHHHHHSTTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCc----------cceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578999999999999999999999999999999987654332 368999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|.++....+
T Consensus 138 ~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 138 DGRELRVQMARYGRP 152 (158)
T ss_dssp SSSEEEEEEECCSSC
T ss_pred CCeEEEEEECCCCCC
Confidence 999999999876443
No 102
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=119.55 Aligned_cols=83 Identities=10% Similarity=0.110 Sum_probs=71.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||.|||.++++++|+++|+.||.|..|+|+++..+.. .+|||||+|++.++|++||+. |+..+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~----------~~g~afV~f~~~~~a~~a~~~-~~~~~ 82 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQ----------SRGFGFVKFKDPNCVGTVLAS-RPHTL 82 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC----------EEEEEEEEESSTTHHHHHHHH-CSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCC----------cceEEEEEECCHHHHHHHHHh-CCCeE
Confidence 3579999999999999999999999999999999988654322 368999999999999999988 98888
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|..+..+.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 83 DGRNIDPKPCTPRG 96 (105)
T ss_dssp TTEEEBCCCSCCSS
T ss_pred CCEEEEEEEccCCC
Confidence 88878887766443
No 103
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.51 E-value=2.6e-14 Score=111.58 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=65.5
Q ss_pred eEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCc
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKG 312 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~g 312 (442)
+|||+|||.++++++|+++|+.||.|..|+|+++..++. ++|||||+|.+.++|++|++ ||+..+.++.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~ 69 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNR----------HRGFGFVTFESEDIVEKVCE-IHFHEINNKM 69 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTT----------SCBEEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC----------cCcEEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence 589999999999999999999999999999987654332 36899999999999999997 9999999888
Q ss_pred eEEEE
Q 046325 313 LRVRV 317 (442)
Q Consensus 313 lrV~l 317 (442)
|+|..
T Consensus 70 l~v~~ 74 (75)
T 2mss_A 70 VECKK 74 (75)
T ss_dssp CEEEC
T ss_pred EEEEe
Confidence 88875
No 104
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-14 Score=118.83 Aligned_cols=81 Identities=20% Similarity=0.131 Sum_probs=70.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..+.++.+..+. ..+|||||+|.+.++|++|++.||+..+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g----------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG----------MPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSS----------CEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCC----------CeeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 46899999999999999999999999999877766544322 13689999999999999999999999999
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
++.|+|.++..
T Consensus 84 g~~l~V~~a~~ 94 (98)
T 2cqp_A 84 SRKVKLVLGSG 94 (98)
T ss_dssp TEECEEEESSC
T ss_pred CeEEEEEEcCC
Confidence 99999998764
No 105
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=118.45 Aligned_cols=82 Identities=23% Similarity=0.336 Sum_probs=69.5
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCC-CCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPP-ESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~-~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
....++|||+|||.++++++|+++|+.|| |..|+|.++. .++. .+|||||+|.+.++|++|+ .||+.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~----------~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPER----------LKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCC----------CCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCc----------cCeEEEEEECCHHHHHHHH-hcCCC
Confidence 34679999999999999999999999999 9999998765 2221 3689999999999999999 99999
Q ss_pred cCCCCceEEEEeecC
Q 046325 307 RNWRKGLRVRVLLRC 321 (442)
Q Consensus 307 ~~~~~glrV~l~~~~ 321 (442)
.+.++.|+|.++..+
T Consensus 84 ~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 84 SLGNRRIRVDVADQA 98 (100)
T ss_dssp CBTTBCCCCEECCCS
T ss_pred EECCeEEEEEeccCC
Confidence 999999999987653
No 106
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=1.1e-14 Score=117.61 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=69.5
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRK 311 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~ 311 (442)
++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.+ |++|+..||+..+.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~-a~~a~~~l~g~~~~g~ 70 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKK----------PKGFGFVEMQEES-VSEAIAKLDNTDFMGR 70 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCC----------CCEEEEEEECTTH-HHHHHHTSCSSCCSSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCC----------cceEEEEEECCHH-HHHHHHHhCCCEECCe
Confidence 6899999999999999999999999999999987654332 3689999999999 9999999999999999
Q ss_pred ceEEEEeecCC
Q 046325 312 GLRVRVLLRCS 322 (442)
Q Consensus 312 glrV~l~~~~~ 322 (442)
.|+|.++....
T Consensus 71 ~l~V~~a~~~~ 81 (90)
T 2ki2_A 71 TIRVTEANPKK 81 (90)
T ss_dssp SCSEEEC----
T ss_pred EEEEEEcCCCC
Confidence 99999987644
No 107
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.50 E-value=8.1e-14 Score=117.57 Aligned_cols=78 Identities=27% Similarity=0.318 Sum_probs=71.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+++.. .+|||||+|.+.++|++|+..||+..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-------------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-------------TRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-------------TTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-------------CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 478999999999999999999999999999999986432 2589999999999999999999999999
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
++.|+|.++..
T Consensus 74 g~~l~v~~a~~ 84 (115)
T 3lqv_A 74 NRYLVVLYYNA 84 (115)
T ss_dssp SCBCEEEECCH
T ss_pred CeEEEEEEecC
Confidence 99999998764
No 108
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.50 E-value=7.1e-14 Score=115.60 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=68.6
Q ss_pred ccccceEEcccCCC-CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 228 ELQSCTVVAENLPE-DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 228 ~~~~rTVyV~nLp~-d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
....++|||+|||. ++++++|+++|+.||.|..|+|. +|||||+|++.++|++|++.||+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------------------~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------------------NAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------------------SSEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------------------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 34689999999998 99999999999999999999983 379999999999999999999999
Q ss_pred cCCCCceEEEEeec
Q 046325 307 RNWRKGLRVRVLLR 320 (442)
Q Consensus 307 ~~~~~glrV~l~~~ 320 (442)
.+.++.|+|.++..
T Consensus 81 ~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 81 MNFGKKLILEVSSS 94 (97)
T ss_dssp EETTEECEEEECCC
T ss_pred EECCEEEEEEecCC
Confidence 99988899988764
No 109
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.7e-14 Score=115.25 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=64.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+.+..++. .+|||||+|.+.++|++|++.||+..+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNK----------CKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCS----------CCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC----------cCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 578999999999999999999999999999999988654332 3689999999999999999999988766
Q ss_pred CCce
Q 046325 310 RKGL 313 (442)
Q Consensus 310 ~~gl 313 (442)
++-+
T Consensus 74 g~~~ 77 (85)
T 1x4e_A 74 AQMA 77 (85)
T ss_dssp EESC
T ss_pred eEEE
Confidence 5433
No 110
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=122.60 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=70.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 130 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK----------HRGFAFVEFELAEDAAAAIDNMNESEL 130 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCC----------CCSEEEEEESCHHHHHHHHHHSTEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCC----------cCcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3579999999999999999999999999999999987654332 368999999999999999999999999
Q ss_pred CCCceEEEEe
Q 046325 309 WRKGLRVRVL 318 (442)
Q Consensus 309 ~~~glrV~l~ 318 (442)
.++.|+|.++
T Consensus 131 ~g~~l~v~~A 140 (140)
T 2ku7_A 131 FGRTIRVNLA 140 (140)
T ss_dssp TTEEEEEEC-
T ss_pred CCEEEEEEeC
Confidence 9888888753
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=3.1e-14 Score=125.01 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=74.5
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+.. .+|||||+|++.++|++|++.||+..+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~----------~~G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE----------SRGFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSS----------CCSCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc----------cceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3579999999999999999999999999999999987654322 368999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++....
T Consensus 115 ~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 115 DGRELRVQMARYGR 128 (135)
T ss_dssp SSSCCEEEECCCCC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999987543
No 112
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.49 E-value=1.5e-14 Score=117.72 Aligned_cols=80 Identities=20% Similarity=0.134 Sum_probs=68.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..+.++.+..+. ..+|||||+|.+.++|++|++.||+..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g----------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG----------MPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTS----------CEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCC----------CEeeEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 46899999999999999999999999999888877654332 13689999999999999999999999999
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
++.|+|.++.
T Consensus 84 gr~l~v~~a~ 93 (95)
T 2ek1_A 84 SRKVKLSGPS 93 (95)
T ss_dssp TEECEEECCC
T ss_pred CcEEEEEecc
Confidence 8888887653
No 113
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.2e-14 Score=113.51 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=70.9
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.| .|..|+|+++ .++ ..+|||||+|++.++|++|++ ||+..+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g----------~~~g~afV~f~~~~~a~~A~~-~~g~~~ 74 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHG----------NKTGYIFVDFSNEEEVKQALK-CNREYM 74 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTS----------CEEEEEEEECSSHHHHHHHHH-SCSEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCC----------CCceEEEEEECCHHHHHHHHH-hCCcee
Confidence 357899999999999999999999999 9999999886 322 136899999999999999999 999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++..+
T Consensus 75 ~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 75 GGRYIEVFREKSG 87 (91)
T ss_dssp TTEEEEEEEESSC
T ss_pred CCcEEEEEECCcC
Confidence 9999999988754
No 114
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.4e-14 Score=114.33 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=68.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcC--CCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVV--GSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~--G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
..++|||+|||.++++++|+++|+.| |.|..|.+. ++||||+|.+.++|++|++.||+..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------------------~g~afV~f~~~~~A~~A~~~l~g~~ 75 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------------------RDYAFVHFSNREDAVEAMKALNGKV 75 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------------------SSEEEEEESSHHHHHHHHHHHSSEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------------------CCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 57899999999999999999999999 999999874 3699999999999999999999999
Q ss_pred CCCCceEEEEeecCC
Q 046325 308 NWRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~~~~glrV~l~~~~~ 322 (442)
+.++.|+|.++..+.
T Consensus 76 ~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 76 LDGSPIEVTLAKPVD 90 (99)
T ss_dssp ETTEEEEEECCCCCC
T ss_pred eCCcEEEEEECCCCC
Confidence 998888888876543
No 115
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.8e-14 Score=117.68 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=67.6
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|.+ .+|||||+|.+.++|++|+..||+..+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----------------EKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----------------TTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----------------CCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 468999999999999999999999999999999973 2579999999999999999999999988
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
++.|+|..+..
T Consensus 90 g~~l~V~~a~~ 100 (101)
T 2la4_A 90 GRNLRTGWGKE 100 (101)
T ss_dssp TEECCCCBCCC
T ss_pred CeEEEEEeccC
Confidence 88888876653
No 116
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=5.3e-14 Score=118.86 Aligned_cols=78 Identities=27% Similarity=0.385 Sum_probs=70.1
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
.+...++|||+|||.++++++|+++|+.||.|..|+|+ +|||||+|.+.++|++|++.||+.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------------------kg~afV~f~~~~~A~~Ai~~l~g~ 88 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------------------NGFAFVEFEEAESAAKAIEEVHGK 88 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------------------TTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------------------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 34568999999999999999999999999999999986 269999999999999999999999
Q ss_pred cCCCCceEEEEeecCC
Q 046325 307 RNWRKGLRVRVLLRCS 322 (442)
Q Consensus 307 ~~~~~glrV~l~~~~~ 322 (442)
.+.++.|+|.++....
T Consensus 89 ~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 89 SFANQPLEVVYSKLPA 104 (108)
T ss_dssp EETTEECEEESCSCCC
T ss_pred EECCeEEEEEEecCCC
Confidence 9998889998876543
No 117
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.2e-14 Score=114.97 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=67.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCC-eEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC-Cc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGS-VKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND-ER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~-V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~-~~ 307 (442)
..++|||+|||.++++++|+++|+.||. |..+.+. .+|||||+|.+.++|++|++.||+ ..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~l~g~~~ 69 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----------------KSGYAFVDYPDQNWAIRAIETLSGKVE 69 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----------------ETTEEEECCSCHHHHHHHHHHHTTTCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----------------CCCEEEEEECCHHHHHHHHHHccCCee
Confidence 5789999999999999999999999999 6666653 157999999999999999999999 88
Q ss_pred CCCCceEEEEeecCC
Q 046325 308 NWRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~~~~glrV~l~~~~~ 322 (442)
+.++.|+|.++..+.
T Consensus 70 ~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 70 LHGKIMEVDYSVSKK 84 (93)
T ss_dssp ETTEECEEEECCCCC
T ss_pred ECCEEEEEEEccCcc
Confidence 999999999887544
No 118
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.3e-13 Score=120.67 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=72.4
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|++.++..++. .+|||||+|.+.++|.+|+..||+..+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS----------SRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC----------EEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC----------cceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 3578999999999999999999999999999999987654332 368999999999999999999999999
Q ss_pred CCCceEEEEee
Q 046325 309 WRKGLRVRVLL 319 (442)
Q Consensus 309 ~~~glrV~l~~ 319 (442)
.++.|+|.++.
T Consensus 155 ~g~~i~v~~a~ 165 (166)
T 3md3_A 155 NGRPLRINWAA 165 (166)
T ss_dssp TTEECEEEESC
T ss_pred CCcEEEEEecC
Confidence 99999998865
No 119
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=2.8e-15 Score=127.17 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=74.1
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEE--------EEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHH
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKT--------IRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAV 300 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~--------Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv 300 (442)
...++|||+|||.++++++|+++|+.||.|.. |+|+.+..+.. .+|||||+|.+.++|++|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~----------~~g~afV~f~~~~~A~~Ai 74 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK----------LKGEATVSFDDPPSAKAAI 74 (116)
Confidence 46789999999999999999999999999998 88877644322 3689999999999999999
Q ss_pred HHhcCCcCCCCceEEEEeecCCC
Q 046325 301 EKLNDERNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 301 ~~Ln~~~~~~~glrV~l~~~~~~ 323 (442)
+.||+..+.++.|+|.++..+..
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 75 DWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 99999999999999999876543
No 120
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.48 E-value=3e-14 Score=123.77 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=72.8
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEE--EEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKT--IRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~--Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
+...++|||+|||.++|+++|+++|+.||.|.. |+|+++..++. .+|||||+|++. +|.+|+..||+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~----------~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQL----------NRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSS----------BCSCEEEECCHH-HHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCC----------cceEEEEEECCH-HHHHHHHHhcC
Confidence 346789999999999999999999999999977 99988765432 368999999999 99999999999
Q ss_pred C----cCCCCceEEEEeecC
Q 046325 306 E----RNWRKGLRVRVLLRC 321 (442)
Q Consensus 306 ~----~~~~~glrV~l~~~~ 321 (442)
. .+.++.|+|.++...
T Consensus 89 ~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 89 LHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp CCCSCCGGGCCCCCEECCCS
T ss_pred CCCCccCCCEEEEEEECCCC
Confidence 9 888899999988653
No 121
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=121.32 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=70.2
Q ss_pred ccceEEcccCCCCCCHHHHH----HHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 230 QSCTVVAENLPEDHSHQNLE----KIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~Lk----elFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
..++|||+|||+++++++|+ ++|+.||.|..|.+.+.. ..+|||||+|++.++|.+|++.||+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~-------------~~rG~aFV~F~~~~~A~~Ai~~lng 94 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSD-------------DNSGKAYIVFATQESAQAFVEAFQG 94 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCC-------------SSCCCEEEEESSHHHHHHHHHHSTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCC-------------CcCCEEEEEECCHHHHHHHHHHHCC
Confidence 57899999999999999876 799999999999985421 1368999999999999999999999
Q ss_pred CcCCCCceEEEEeecCC
Q 046325 306 ERNWRKGLRVRVLLRCS 322 (442)
Q Consensus 306 ~~~~~~glrV~l~~~~~ 322 (442)
..+.++.|+|.++..+.
T Consensus 95 ~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 95 YPFQGNPLVITFSETPQ 111 (127)
T ss_dssp CCCTTSCCEEEECCCCC
T ss_pred CEeCCCEEEEEEccCcc
Confidence 99999999999987654
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=4e-14 Score=121.25 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=68.9
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVG-SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G-~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||+++++++|+++|+.|| .|..|.|.... .+|||||+|++.++|++||+.||+..+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~--------------~rGfaFV~F~~~e~A~~Ai~~lng~~l 92 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD--------------FDGTGALEFPSEEILVEALERLNNIEF 92 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS--------------SSCCEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC--------------CCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 467999999999999999999999999 99999985321 258999999999999999999999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++...
T Consensus 93 ~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 93 RGSVITVERDDNP 105 (111)
T ss_dssp TTEEEEEEESCC-
T ss_pred CCeEEEEEECCCC
Confidence 9999999887643
No 123
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=115.63 Aligned_cols=79 Identities=23% Similarity=0.248 Sum_probs=68.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEE-EEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKT-IRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~-Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||+++|+++|+++|+.||.|.. |+|+.+ .++. .+|||||+|++.++|++||+. |+..+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~----------~~G~afV~F~~~~~a~~A~~~-~~~~~ 81 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGR----------STGEAFVQFASQEIAEKALKK-HKERI 81 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSC----------BCSEEEEEESSHHHHHHHHTT-TTCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCC----------cceEEEEEECCHHHHHHHHHh-Ccchh
Confidence 5789999999999999999999999999987 988776 3221 368999999999999999987 88888
Q ss_pred CCCceEEEEeec
Q 046325 309 WRKGLRVRVLLR 320 (442)
Q Consensus 309 ~~~glrV~l~~~ 320 (442)
.++.|+|..+.+
T Consensus 82 ~gr~i~v~~~~~ 93 (104)
T 1wg5_A 82 GHRYIEIFKSSR 93 (104)
T ss_dssp SSSCCEEEEECT
T ss_pred CCcEEEEEECCH
Confidence 888899987654
No 124
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=113.79 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=68.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||.|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|++.++|++|++. +..+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~a~~A~~~--~~~~ 80 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH----------SKGFGFVRFTEYETQVKVMSQ--RHMI 80 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCS----------EEEEEEEEESSHHHHHHHHHS--CEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCC----------ccceEEEEECCHHHHHHHHHc--CCee
Confidence 3578999999999999999999999999999999988654332 368999999999999999983 4566
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++..+
T Consensus 81 ~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 81 DGRWCDCKLPNSK 93 (103)
T ss_dssp TTEEEEEECCCTT
T ss_pred CCeEEEEEecCCC
Confidence 7777888877654
No 125
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9e-14 Score=116.40 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=68.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||+++|+++|+++|+.||.| .|+|+++. +. + .+|||||+|++.++|++|| .+|+..+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g--~--------~~G~afV~F~~~~~a~~Al-~~~~~~~~ 80 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DG--R--------VTGEADVEFATHEDAVAAM-AKDKANMQ 80 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SS--C--------EEEEEEEECSSSHHHHHHH-TTSSCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CC--C--------EeeEEEEEECCHHHHHHHH-HhCCCeEC
Confidence 56899999999999999999999999955 99998764 22 1 3689999999999999999 58999999
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.|+|.++.+.
T Consensus 81 gr~i~V~~~~~~ 92 (102)
T 1wez_A 81 HRYVELFLNSTA 92 (102)
T ss_dssp SSCCEEEEECCC
T ss_pred CcEEEEEECCCC
Confidence 898999876643
No 126
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.47 E-value=2.7e-13 Score=124.39 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=75.4
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|.+|++.||+..+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~----------~~g~afV~F~~~~~A~~A~~~l~g~~~ 192 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGK----------HKGYGFIEYEKAQSSQDAVSSMNLFDL 192 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCC----------cCceEEEEecCHHHHHHHHHHccCCEe
Confidence 4568999999999999999999999999999999988654332 368999999999999999999999999
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|+|..+.....
T Consensus 193 ~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 193 GGQYLRVGKAVTPPM 207 (216)
T ss_dssp SSSBCEEEECSSCSS
T ss_pred CCcEEEEEEecCCCC
Confidence 999999999876543
No 127
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.47 E-value=1.1e-13 Score=129.05 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=85.8
Q ss_pred ChHHHHHHhhcCCceEEecCCccccccCCCCchhhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 046325 192 NNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNS 271 (442)
Q Consensus 192 d~~~I~~AL~~S~~LeVseDg~kVRRk~Pl~e~~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~ 271 (442)
+.+.+..||+......+. +..++...............++|||+|||.++|+++|+++|+.||.|..|+|+++..
T Consensus 66 ~~~~A~~Ai~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--- 140 (213)
T 4f02_A 66 QPADAERALDTMNFDVIK--GKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--- 140 (213)
T ss_dssp SHHHHHHHHHHHTTCEET--TEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT---
T ss_pred CHHHHHHHHHHhhhhhcC--CcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC---
Confidence 456666676543332322 333332222122222233567999999999999999999999999999999987532
Q ss_pred CCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEeecC
Q 046325 272 SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLLRC 321 (442)
Q Consensus 272 sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~~~~ 321 (442)
..+|||||+|.+.++|++|++.||+..+.++.|+|..+.++
T Consensus 141 ---------~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 141 ---------GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp ---------EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ---------CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 13689999999999999999999999999999999988654
No 128
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=4.2e-14 Score=115.45 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=71.6
Q ss_pred cccceEEcccCCCCCCHHHHH----HHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 229 LQSCTVVAENLPEDHSHQNLE----KIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~Lk----elFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
...++|||+|||.++++++|+ ++|+.||.|..|+|.+. . ..+|||||+|.+.++|++|++.||
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-----~--------~~~g~afV~f~~~~~A~~A~~~l~ 72 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-----L--------KMRGQAFVIFKEVSSATNALRSMQ 72 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-----H--------HHTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-----C--------CcCcEEEEEeCCHHHHHHHHHHhC
Confidence 357899999999999999999 99999999999998631 0 135899999999999999999999
Q ss_pred CCcCCCCceEEEEeecCCC
Q 046325 305 DERNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 305 ~~~~~~~glrV~l~~~~~~ 323 (442)
+..+.++.|+|..+.....
T Consensus 73 g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 73 GFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp TCEETTEECEEEECSSCCT
T ss_pred CCEECCcEEEEEEccCCCc
Confidence 9999999999998876443
No 129
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=6.2e-14 Score=117.25 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=68.7
Q ss_pred ccceEEcccCCCCC------CHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHh
Q 046325 230 QSCTVVAENLPEDH------SHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL 303 (442)
Q Consensus 230 ~~rTVyV~nLp~d~------T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~L 303 (442)
..++|||+|||.++ |+++|+++|+.||.|..|+|++ .++ ..+|||||+|.+.++|++|+..|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g----------~~~G~afV~f~~~~~A~~Ai~~l 81 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG----------KTKGYIFLEYASPAHAVDAVKNA 81 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTT----------BSCCEEEEEECSSSHHHHHHHHC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCC----------CeeeEEEEEECCHHHHHHHHHHh
Confidence 47899999999999 7899999999999999999873 222 13689999999999999999999
Q ss_pred cCCcCCCC-ceEEEEee
Q 046325 304 NDERNWRK-GLRVRVLL 319 (442)
Q Consensus 304 n~~~~~~~-glrV~l~~ 319 (442)
|+..+.++ .|+|.++.
T Consensus 82 ~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 82 DGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp SSEECSTTCEEEEECSC
T ss_pred CCcccCCCceEEEEEcc
Confidence 99999988 89998865
No 130
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=113.93 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=67.2
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.| +|+++ .+. ..+|||||+|.+.++|++|++.||+..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g----------~~~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNG----------KSKGYAFIEFASFEDAKEALNSCNKREI 78 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSS----------CBCSEEEEECSSHHHHHHHHHHTSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCC----------CEeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 357999999999999999999999999987 44443 111 1368999999999999999999999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++..+
T Consensus 79 ~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 79 EGRAIRLELQGPR 91 (101)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEEcCCC
Confidence 9888999987754
No 131
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=4.2e-14 Score=110.16 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=65.2
Q ss_pred eEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCc
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKG 312 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~g 312 (442)
+|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++ +++..+.++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK----------RRGFCFITFKEEEPVKKIME-KKYHNVGLSK 69 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSS----------SCCCEEEECSSSHHHHHHHT-TSSCCBTTBC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC----------cCCEEEEEECCHHHHHHHHH-hCCCeECCEE
Confidence 699999999999999999999999999999987654332 36899999999999999997 5888888888
Q ss_pred eEEEEe
Q 046325 313 LRVRVL 318 (442)
Q Consensus 313 lrV~l~ 318 (442)
|+|+++
T Consensus 70 l~v~~a 75 (75)
T 1iqt_A 70 CEIKVA 75 (75)
T ss_dssp CCEEEC
T ss_pred EEEEEC
Confidence 888764
No 132
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=115.44 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=69.7
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCe----EEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSV----KTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V----~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
...++|||+|||.++|+++|+++|+.||.| ..+++.. . ..+|||||+|.+.++|++|++.||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----g----------~~~g~afV~f~~~~~a~~Ai~~l~ 88 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT----G----------RMRGQAFITFPNKEIAWQALHLVN 88 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC----S----------SSCSEEEEECSSHHHHHHHHHHST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC----C----------ccceEEEEEECCHHHHHHHHHHhC
Confidence 357999999999999999999999999998 5555541 1 136899999999999999999999
Q ss_pred CCcCCCCceEEEEeecCCC
Q 046325 305 DERNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 305 ~~~~~~~glrV~l~~~~~~ 323 (442)
+..+.++.|+|.++..+..
T Consensus 89 g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 89 GYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp TCBCSSCBCEEEECCCCSC
T ss_pred CCEeCCcEEEEEEccCCCC
Confidence 9999999999999876543
No 133
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.46 E-value=1.7e-13 Score=121.13 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=71.7
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
....++|||+|||.++++++|+++|+.||.|..|+|+++ .+|||||+|.+.++|++|+..||+..
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---------------~~g~afV~f~~~~~a~~A~~~l~g~~ 134 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---------------PPGFAFVEFEDPRDAADAVRELDGRT 134 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---------------SCSEEEEEESSHHHHHHHHHHHSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---------------CCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 346799999999999999999999999999999999764 15799999999999999999999999
Q ss_pred CCCCceEEEEeecC
Q 046325 308 NWRKGLRVRVLLRC 321 (442)
Q Consensus 308 ~~~~glrV~l~~~~ 321 (442)
+.++.|+|.++.++
T Consensus 135 ~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 135 LCGCRVRVELSNGE 148 (150)
T ss_dssp SSSSCCEEEECCCC
T ss_pred ECCeEEEEEEcCCC
Confidence 99999999987653
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.46 E-value=1.3e-13 Score=115.68 Aligned_cols=73 Identities=23% Similarity=0.202 Sum_probs=67.6
Q ss_pred ccceEEcccCCCC-CCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPED-HSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d-~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||.+ +++++|+++|+.||.|..|+|. ++||||+|++.++|++|++.||+..+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~------------------~g~afV~f~~~~~A~~A~~~l~g~~~ 87 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH------------------KGYAFVQYSNERHARAAVLGENGRVL 87 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE------------------TTEEEEECSSSHHHHHHHHHHTTCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe------------------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4689999999999 9999999999999999999982 37999999999999999999999999
Q ss_pred CCCceEEEEeec
Q 046325 309 WRKGLRVRVLLR 320 (442)
Q Consensus 309 ~~~glrV~l~~~ 320 (442)
.++.|+|.++..
T Consensus 88 ~g~~l~V~~a~~ 99 (110)
T 1wf1_A 88 AGQTLDINMAGE 99 (110)
T ss_dssp TTEECCEEESCC
T ss_pred CCeEEEEEECCC
Confidence 999999998764
No 135
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-14 Score=118.32 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=67.8
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++|+++|+++|+.||.|.. .++.+..++ ..+|||||+|++.++|++|++ ||+..+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g----------~~~g~afV~f~~~~~a~~A~~-l~g~~~ 82 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTG----------TNRKFGYVDFESAEDLEKALE-LTGLKV 82 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEE----------TTTTEEEEEESSHHHHHHHHH-GGGCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCC----------CcCcEEEEEECCHHHHHHHHh-cCCcEE
Confidence 45789999999999999999999999999877 443332211 236899999999999999998 999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++..+
T Consensus 83 ~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 83 FGNEIKLEKPKGR 95 (101)
T ss_dssp TTBCCEEECCSCC
T ss_pred CCcEEEEEEcCCC
Confidence 9999999987653
No 136
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.3e-14 Score=119.37 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=70.6
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCe-EEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSV-KTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V-~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||.++|+++|+++|+.||.| ..|+|+++. ++. .+|||||+|++.++|++||+. |+..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~----------~~G~afV~F~~~~~a~~Al~~-~~~~~ 81 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQ----------GLGQALVQFKNEDDARKSERL-HRKKL 81 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSS----------CSSCEEEECSSHHHHHHHGGG-CSEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCC----------cceEEEEEECCHHHHHHHHHh-CCCcc
Confidence 57899999999999999999999999999 899998765 221 368999999999999999976 98888
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|..+.+..
T Consensus 82 ~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 82 NGREAFVHVVTLED 95 (114)
T ss_dssp TTEEEEEEEECHHH
T ss_pred CCeEEEEEECCHHH
Confidence 88889999886543
No 137
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=3.6e-13 Score=119.11 Aligned_cols=79 Identities=13% Similarity=0.334 Sum_probs=69.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++|+++|+++|+.||.|..|+|.++.. + ..+|||||+|.+.++|.+|++.||+..+
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g----------~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-G----------LSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S----------CEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-C----------CEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 3678999999999999999999999999999999987642 1 1368999999999999999999999877
Q ss_pred CC---CceEEEEe
Q 046325 309 WR---KGLRVRVL 318 (442)
Q Consensus 309 ~~---~glrV~l~ 318 (442)
+. +.|+|.++
T Consensus 162 ~~g~~~~l~V~~a 174 (175)
T 3nmr_A 162 MEGCSSPMVVKFA 174 (175)
T ss_dssp CTTCSSCCEEEEC
T ss_pred cCCCCCCeEEEec
Confidence 64 78888875
No 138
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=7.5e-14 Score=119.58 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=70.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCC---eEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGS---VKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~---V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
..++|||+|||+++|+++|+++|+.||. |..|+|+++.. + ..+|||||+|++.++|++||+ ||+.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g----------~~~G~afV~F~~~~~a~~Al~-~~g~ 83 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-G----------RQSGEAFVELESEDDVKLALK-KDRE 83 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-S----------CEEEEEEEEBSSHHHHHHHGG-GTTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-C----------CCCeEEEEEECCHHHHHHHHh-cCCC
Confidence 5789999999999999999999999999 89999987653 2 236899999999999999998 9999
Q ss_pred cCCCCceEEEEeec
Q 046325 307 RNWRKGLRVRVLLR 320 (442)
Q Consensus 307 ~~~~~glrV~l~~~ 320 (442)
.+.++.|+|..+..
T Consensus 84 ~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 84 SMGHRYIEVFKSHR 97 (118)
T ss_dssp EETTEEEEEEEECH
T ss_pred eECCeEEEEEECCH
Confidence 99888888888754
No 139
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=9.9e-14 Score=113.21 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=67.9
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
....++|||+|||.++++++|+++|+.||.|..| ... . ..+|||||+|.+.++|++|++.||+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~---~----------~~~g~afV~f~~~~~a~~A~~~l~g~~ 77 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQD---G----------KSKGIAYIEFKSEADAEKNLEEKQGAE 77 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EET---T----------EEEEEEEEEESSHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCC---C----------CcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3467999999999999999999999999988776 111 1 136899999999999999999999999
Q ss_pred CCCCceEEEEeecCC
Q 046325 308 NWRKGLRVRVLLRCS 322 (442)
Q Consensus 308 ~~~~glrV~l~~~~~ 322 (442)
+.++.|+|.++..+.
T Consensus 78 ~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 78 IDGRSVSLYYTGEKG 92 (96)
T ss_dssp ETTEEEEEEECSSSC
T ss_pred ECCeEEEEEEcCCCC
Confidence 998889998876543
No 140
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.44 E-value=6.3e-13 Score=117.00 Aligned_cols=80 Identities=25% Similarity=0.368 Sum_probs=70.2
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|.++..++. .+|||||+|.+.++|.+|++.||+..+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGR----------PRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCC----------cceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 3578999999999999999999999999999999988654322 368999999999999999999999998
Q ss_pred CC--CceEEEEe
Q 046325 309 WR--KGLRVRVL 318 (442)
Q Consensus 309 ~~--~glrV~l~ 318 (442)
.+ ..|+|.++
T Consensus 157 ~g~~~~l~V~~A 168 (168)
T 1b7f_A 157 EGGSQPLSVRLA 168 (168)
T ss_dssp TTCSSCCEEEEC
T ss_pred cCCCeEEEEEeC
Confidence 76 77888764
No 141
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=110.56 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=69.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEE-EeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIR-ICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vr-i~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||.++++++|+++|+.||.|..|+ |+.+.. .+.|||+|.+.++|++|++.||+..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~--------------~~~afV~f~~~~~a~~Ai~~l~g~~~ 79 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE--------------TAVVNVTYSSKDQARQALDKLNGFQL 79 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS--------------SEEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC--------------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 468999999999999999999999999999995 765432 24599999999999999999999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++.++
T Consensus 80 ~g~~l~V~~a~~~ 92 (96)
T 2e44_A 80 ENFTLKVAYIPDE 92 (96)
T ss_dssp SSCBCEEEECCCC
T ss_pred CCcEEEEEEcCcc
Confidence 9999999998765
No 142
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=111.72 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=67.7
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||.|||.++++++|+++|+.|+. |+++.+..+. ..+|||||+|++.++|++||+.||+..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~----------~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETG----------SSKGFGFVDFNSEEDAKAAKEAMEDGEI 79 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSC----------SEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCC----------CcCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 36799999999999999999999998864 4554443322 1368999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++.++.
T Consensus 80 ~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 80 DGNKVTLDWAKPKG 93 (102)
T ss_dssp TTEECEEEECCCCC
T ss_pred CCeEEEEEEecCCC
Confidence 99999999987644
No 143
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.43 E-value=2.2e-13 Score=108.77 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=64.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcC----C-------CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHH
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVV----G-------SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEK 298 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~----G-------~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~k 298 (442)
+.++|||+|||.++++++|+++|+.| | .|..|++.++ +|||||+|.+.++|++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----------------kg~afV~f~~~~~a~~ 68 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----------------KNFAFLEFRSVDETTQ 68 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----------------SSEEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----------------CcEEEEEcCCHHHHHH
Confidence 57999999999999999999999999 8 9999998653 4799999999999999
Q ss_pred HHHHhcCCcCCCCceEEE
Q 046325 299 AVEKLNDERNWRKGLRVR 316 (442)
Q Consensus 299 Av~~Ln~~~~~~~glrV~ 316 (442)
|+ .||+..+.++.|+|+
T Consensus 69 A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 69 AM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp HG-GGTTCEETTEECEEE
T ss_pred HH-hcCCCEECCeEEEEe
Confidence 99 999999988888775
No 144
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.43 E-value=5.1e-13 Score=118.27 Aligned_cols=112 Identities=17% Similarity=0.264 Sum_probs=84.0
Q ss_pred ChHHHHHHhhcCCceEEecCCccccccCCCCchhhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 046325 192 NNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNS 271 (442)
Q Consensus 192 d~~~I~~AL~~S~~LeVseDg~kVRRk~Pl~e~~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~ 271 (442)
+.+.+..|| .-.-..+. |..++-..+... ......++|||+|||.++++++|+++|+.||.|..|+|.++..++.
T Consensus 60 ~~~~A~~A~-~~~~~~~~--g~~i~v~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~ 134 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQ--GQSLKIRRPHDY--QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 134 (172)
T ss_dssp SHHHHHHHG-GGTTCEET--TEECEEECCSSC--CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCS
T ss_pred CHHHHHHHH-HhCCcEec--CceeeecCCccc--CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCC
Confidence 567777777 33333443 333222211111 1122478999999999999999999999999999999988654332
Q ss_pred CCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEe
Q 046325 272 SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVL 318 (442)
Q Consensus 272 sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~ 318 (442)
.+|||||+|.+.++|.+|++.||+..+.++.|+|..+
T Consensus 135 ----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 135 ----------SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ----------EEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------cceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3689999999999999999999999999988998875
No 145
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.43 E-value=4.5e-13 Score=117.39 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=72.2
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
+++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~----------~~g~afV~f~~~~~A~~a~~~l~~~~~~g 71 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ----------SLGYGFVNYIDPKDAEKAINTLNGLRLQT 71 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCc----------ceeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 58999999999999999999999999999999988654332 36899999999999999999999999998
Q ss_pred CceEEEEeecC
Q 046325 311 KGLRVRVLLRC 321 (442)
Q Consensus 311 ~glrV~l~~~~ 321 (442)
+.|+|..+.+.
T Consensus 72 ~~l~v~~~~~~ 82 (167)
T 1fxl_A 72 KTIKVSYARPS 82 (167)
T ss_dssp EECEEEECCCC
T ss_pred ceEEEEecCCC
Confidence 88999887643
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5e-13 Score=109.73 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=67.0
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|| ++++++|+++|+.||.|..|.|.+ .+|||||+|.+.++|++|+..||+..+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~----------------~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP----------------PRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET----------------TTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC----------------CCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 5789999996 899999999999999999999853 2579999999999999999999999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|+|.++..+.
T Consensus 76 g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 76 SVQLKVNIARKQP 88 (97)
T ss_dssp TEEEEEECCSSCC
T ss_pred CeEEEEEECCCCC
Confidence 8888888876543
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.43 E-value=3.6e-13 Score=125.51 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=72.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..+||||+|||.++|+++|+++|++||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~----------~~G~afV~F~~~~~A~~Ai~~~~~~~~~ 83 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR----------SLGYAYVNFQQPADAERALDTMNFDVIK 83 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCC----------ccccccceeCCHHHHHHHHHHhhhhhcC
Confidence 568999999999999999999999999999999988755432 3689999999999999999999999999
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.|+|......
T Consensus 84 g~~i~~~~~~~~ 95 (213)
T 4f02_A 84 GKPVRIMWSQRD 95 (213)
T ss_dssp TEECEEEECCCC
T ss_pred Cccccccccccc
Confidence 888888876543
No 148
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.43 E-value=9.2e-14 Score=116.59 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=69.9
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCC---eEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGS---VKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~---V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
..++|||+|||+++|+++|+++|+.||. |..|+|+++.. +. .+|||||+|.+.++|++||+ ||+.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~----------~~G~afV~F~~~~~a~~Al~-~~~~ 77 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GK----------RRGDALIEMESEQDVQKALE-KHRM 77 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-ST----------TCSEEEEEBSSHHHHHHHHT-TTTC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CC----------EeeEEEEEECCHHHHHHHHH-hCcc
Confidence 5789999999999999999999999998 89999987654 21 36899999999999999998 9999
Q ss_pred cCCCCceEEEEeec
Q 046325 307 RNWRKGLRVRVLLR 320 (442)
Q Consensus 307 ~~~~~glrV~l~~~ 320 (442)
.+.++.|+|..+.+
T Consensus 78 ~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 78 YMGQRYVEVYEINN 91 (107)
T ss_dssp CSSSSCCCCEECCH
T ss_pred eeCCeEEEEEECCH
Confidence 98888899988764
No 149
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=1.2e-13 Score=122.30 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=70.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCC---eEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGS---VKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~---V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
..++|||+|||+++|+++|+++|+.||. |..|+|+++.. + ..+|||||+|++.++|++||+ ||+.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g----------~srG~aFV~F~~~e~a~~Al~-~~g~ 110 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-G----------RQSGEAFVELGSEDDVKMALK-KDRE 110 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-S----------CEEEEEEEECSSHHHHHHHHT-TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-C----------CCCeEEEEEECCHHHHHHHHh-cCCC
Confidence 5789999999999999999999999999 89999987654 2 236899999999999999998 9999
Q ss_pred cCCCCceEEEEeec
Q 046325 307 RNWRKGLRVRVLLR 320 (442)
Q Consensus 307 ~~~~~glrV~l~~~ 320 (442)
.+.++.|+|..+.+
T Consensus 111 ~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 111 SMGHRYIEVFKSHR 124 (136)
T ss_dssp ESSSSEEEEEECCH
T ss_pred EECCEEEEEEECCh
Confidence 99988888887653
No 150
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=7.9e-14 Score=119.81 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=68.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++|+++|+++|+.||.|..+.++.+..++ ..+|||||+|++.++|++||+ ||+..+.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g----------~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNG----------KATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTS----------SEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCC----------CCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 56899999999999999999999999999774433322222 236899999999999999998 9999999
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.|+|..+...
T Consensus 93 gr~i~V~~a~~~ 104 (124)
T 1wel_A 93 NRFIQVHPITKK 104 (124)
T ss_dssp TSCBEEEEECHH
T ss_pred CcEEEEEECCHH
Confidence 999999987653
No 151
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.42 E-value=4e-13 Score=123.40 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=72.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||.|||.++++++|+++|+.||.|..|.|+.+. +.. .+|||||+|++.++|++|++.||+..+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~----------~kG~afV~F~~~~~A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGR----------SLGTADVHFERRADALKAMKQYKGVPLD 155 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSS----------CSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCC----------EeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 46899999999999999999999999999999998765 221 3689999999999999999999999999
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.|+|.++...
T Consensus 156 Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 156 GRPMDIQLVASQ 167 (177)
T ss_dssp SSBCEEEEESSG
T ss_pred CEEEEEEEecCC
Confidence 999999998753
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.42 E-value=6.3e-13 Score=120.12 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=69.9
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|.+|+.. ++..+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~F~~~~~A~~A~~~-~~~~~ 170 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK----------KRGFAFVTFDDHDSVDKIVIQ-KYHTV 170 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHC-SCCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCC----------ccceEEEEECCHHHHHHHHHh-CCcEE
Confidence 3568999999999999999999999999999999988654332 368999999999999999975 78888
Q ss_pred CCCceEEEEeecCCC
Q 046325 309 WRKGLRVRVLLRCSP 323 (442)
Q Consensus 309 ~~~glrV~l~~~~~~ 323 (442)
.++.|.|..+..+..
T Consensus 171 ~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 171 NGHNCEVRKALSKQE 185 (196)
T ss_dssp TTEECEEEECC----
T ss_pred CCEEEEEEecCChhH
Confidence 888899998876544
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.42 E-value=1.3e-12 Score=114.50 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=68.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|..+..++. .+|||||+|.+.++|.+|++.||+..+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~----------~~g~afV~f~~~~~A~~A~~~l~g~~~ 155 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV----------SRGVGFIRFDKRIEAEEAIKGLNGQKP 155 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCC----------ccceEEEEeCCHHHHHHHHHHhcCCcc
Confidence 3578999999999999999999999999999999987653322 368999999999999999999999998
Q ss_pred CCCc--eEEEE
Q 046325 309 WRKG--LRVRV 317 (442)
Q Consensus 309 ~~~g--lrV~l 317 (442)
.++. |+|.+
T Consensus 156 ~g~~~~i~v~~ 166 (167)
T 1fxl_A 156 SGATEPITVKF 166 (167)
T ss_dssp TTCSSCCEEEE
T ss_pred CCCccceEEEe
Confidence 8865 55554
No 154
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=2.7e-13 Score=109.51 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=67.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|++| .|..|+|.+ .+|||||+|.+.++|++|++.||+..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~----------------~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 66 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR----------------NKRTAFVTLLNGEQAQNAIQMFHQYSFR 66 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG----------------GGTEEEECCSCHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC----------------CCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 46899999999999999999999999 999999841 2689999999999999999999999999
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
++.|+|.++..
T Consensus 67 g~~l~V~~a~~ 77 (88)
T 1wg1_A 67 GKDLIVQLQPT 77 (88)
T ss_dssp TEEEEEEECCC
T ss_pred CcEEEEEEcCC
Confidence 99999988754
No 155
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.41 E-value=5e-13 Score=117.77 Aligned_cols=113 Identities=12% Similarity=0.237 Sum_probs=85.3
Q ss_pred ChHHHHHHhhcCCceEEecCCccccccCCCCchhhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 046325 192 NNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNS 271 (442)
Q Consensus 192 d~~~I~~AL~~S~~LeVseDg~kVRRk~Pl~e~~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~ 271 (442)
+.+.+..||... ..+ +|..++-....+.. .....++|||+|||.++++++|+++|+.||.|..|+|.++..++.
T Consensus 54 ~~~~a~~A~~~~--~~~--~g~~i~v~~~~~~~--~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~ 127 (167)
T 2cjk_A 54 KPSSVDEVVKTQ--HIL--DGKVIDPKRAIPRD--EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQ 127 (167)
T ss_dssp STHHHHHHHHSC--CEE--TTEECCCEECCCHH--HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSST
T ss_pred cHHHHHHHHhcc--ccc--CCeEcccccccchh--hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCc
Confidence 456777777742 223 24434322222221 223578999999999999999999999999999999987654332
Q ss_pred CCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEeecC
Q 046325 272 SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLLRC 321 (442)
Q Consensus 272 sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~~~~ 321 (442)
.+|||||+|.+.++|.+|++ |++..+.++.|+|..+.++
T Consensus 128 ----------~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 128 ----------SRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ----------TSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ----------cceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 36899999999999999997 8988999999999988754
No 156
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.1e-13 Score=115.14 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=67.5
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||+++|+++|+++|+.| .|..|+|+++.. + + .+|||||+|++.++|++|| .||+..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g--~--------~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-G--R--------NNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-C--C--------CCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-C--C--------CCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 35899999999999999999999999 899999987643 2 1 3689999999999999999 79999888
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
++.|.|..+..
T Consensus 82 gr~i~V~~a~~ 92 (109)
T 2dnn_A 82 QRYVEVSPATE 92 (109)
T ss_dssp TEEEEEEECCH
T ss_pred CeEEEEEECCc
Confidence 88888876643
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.40 E-value=7.5e-13 Score=121.12 Aligned_cols=77 Identities=23% Similarity=0.275 Sum_probs=67.6
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
..+|||+||++.+|+++|+++|++||.|+.|+|.... .+|||||||++.++|++|++.||+..+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--------------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--------------NQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--------------SCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--------------CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 4679999999999999999999999999999985421 24799999999999999999999999976
Q ss_pred --CceEEEEeecC
Q 046325 311 --KGLRVRVLLRC 321 (442)
Q Consensus 311 --~glrV~l~~~~ 321 (442)
+.|+|.++..+
T Consensus 112 ~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 112 ACCTLRIDFSKLT 124 (164)
T ss_dssp SCSCEEEEECSSS
T ss_pred CCcEEEEEEecCC
Confidence 77888887754
No 158
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.40 E-value=1.7e-13 Score=121.85 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=69.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||+++|+++|+++|+.|| |..|+|+++.. . + .+|||||+|++.++|++|| .+|+..+.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g--~--------srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-G--R--------VTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-S--C--------SSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-C--C--------CceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 578999999999999999999999999 77999987643 2 1 3689999999999999999 89999998
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|+|.++....
T Consensus 112 gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 112 HRYIELFLNSTTG 124 (139)
T ss_dssp SCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 8888888776543
No 159
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.9e-13 Score=116.88 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=65.1
Q ss_pred ccceEEc--ccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 230 QSCTVVA--ENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 230 ~~rTVyV--~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
..++||| +||++++++++|+++|++||.|..|.|+.. +|||||+|++.++|++|++.||+..
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----------------rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----------------KPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----------------CSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----------------CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 5688999 669999999999999999999999998531 4799999999999999999999987
Q ss_pred C-----CCCceEEEEeecC
Q 046325 308 N-----WRKGLRVRVLLRC 321 (442)
Q Consensus 308 ~-----~~~glrV~l~~~~ 321 (442)
+ .+..|.|.++...
T Consensus 88 ~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 88 VVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp EECTTSCEEECEEEEESCC
T ss_pred EccccCCCcEEEEEecccC
Confidence 6 3455777777643
No 160
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.40 E-value=2.5e-13 Score=112.14 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=70.0
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|+++. ++ ..+|||||+|++.++|++|++ ++..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g----------~~~g~afV~f~~~~~a~~Ai~--~~~~~ 73 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TG----------VSKGYGFVSFYNDVDVQKIVE--SQINF 73 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TS----------CEEEEEEEEESSCCCHHHHTT--CCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CC----------CccceEEEEECCHHHHHHHHh--CCCeE
Confidence 467999999999999999999999999999999998865 22 136899999999999999997 77777
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|.|..+.++.
T Consensus 74 ~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 74 HGKKLKLGPAIRKQ 87 (102)
T ss_dssp TTEECEEEEEEECC
T ss_pred CCEEEEEEECCcCc
Confidence 78888888877544
No 161
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.39 E-value=7e-13 Score=124.16 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=69.9
Q ss_pred ccceEEcccCC-CCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLP-EDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp-~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
+.+||||+||| +++++++|+++|+.||.|..|+|.++. +|||||+|++.++|++||+.||+..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---------------~g~afV~f~~~~~A~~Ai~~lng~~~ 67 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---------------PGAAMVEMADGYAVDRAITHLNNNFM 67 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---------------TTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---------------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 57899999999 899999999999999999999997631 48999999999999999999999999
Q ss_pred CCCceEEEEeec
Q 046325 309 WRKGLRVRVLLR 320 (442)
Q Consensus 309 ~~~glrV~l~~~ 320 (442)
.++.|+|.++..
T Consensus 68 ~g~~l~v~~s~~ 79 (205)
T 3tyt_A 68 FGQKMNVCVSKQ 79 (205)
T ss_dssp TTEECEEEECSC
T ss_pred CCceEEEEEccC
Confidence 999999998764
No 162
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.39 E-value=6.6e-13 Score=116.90 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=72.0
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|.++..++. .+|||||+|.+.++|++|++.|++..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~a~~~l~~~~~~ 71 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGY----------SYGYAFVDFTSEMDSQRAIKVLNGITVR 71 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTE----------ECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCc----------cceEEEEEECCHHHHHHHHHhcCCCEeC
Confidence 468999999999999999999999999999999977543321 3589999999999999999999999999
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.|+|..+...
T Consensus 72 g~~l~v~~~~~~ 83 (168)
T 1b7f_A 72 NKRLKVSYARPG 83 (168)
T ss_dssp TEECEEEECCCC
T ss_pred CcEEEEEecCCC
Confidence 888999887643
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.39 E-value=3.9e-13 Score=117.88 Aligned_cols=81 Identities=22% Similarity=0.325 Sum_probs=69.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEE--------EEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHH
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKT--------IRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 301 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~--------Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~ 301 (442)
..++|||+|||.++|+++|+++|+.||.|.. |++.... ..+|||||+|.+.++|.+|+.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g-------------~~~g~afV~f~~~~~A~~Ai~ 110 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG-------------RMKGQAFIGLPNEKAAAKALK 110 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEET-------------TTEEEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCC-------------CcccEEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999876 4443211 136899999999999999999
Q ss_pred HhcCCcCCCCceEEEEeecCCC
Q 046325 302 KLNDERNWRKGLRVRVLLRCSP 323 (442)
Q Consensus 302 ~Ln~~~~~~~glrV~l~~~~~~ 323 (442)
.||+..+.++.|+|.++....+
T Consensus 111 ~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 111 EANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp HHTTBEETTEECEEEECCCSCC
T ss_pred HhCCCEeCCcEEEEEECCCCCC
Confidence 9999999999999999876544
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=1.4e-12 Score=118.04 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=74.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..|+|.++..++. .+|||||+|.+.++|++|++.||+..+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~ 181 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL----------SKGYAFCEYVDINVTDQAIAGLNGMQL 181 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS----------EEEEEEEEESSSSHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC----------cceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3569999999999999999999999999999999987654332 368999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|.++.++.
T Consensus 182 ~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 182 GDKKLLVQRASVGA 195 (198)
T ss_dssp TTEECEEEESCCCC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999887644
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.38 E-value=9.4e-13 Score=115.21 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=71.1
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRK 311 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~ 311 (442)
|+|||+|||.++|+++|+++|+.||.|..|+|+++... ..+|||||+|.+.++|++|++.||+..+.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~-----------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-----------KNVNYAFVEYHQSHDANIALQTLNGKQIENN 69 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC------------CCEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCC-----------CCCCEEEEEeCCHHHHHHHHHHcCCCccCCC
Confidence 68999999999999999999999999999999876431 1368999999999999999999999999999
Q ss_pred ceEEEEeecCC
Q 046325 312 GLRVRVLLRCS 322 (442)
Q Consensus 312 glrV~l~~~~~ 322 (442)
.|+|..+....
T Consensus 70 ~i~v~~~~~~~ 80 (166)
T 3md3_A 70 IVKINWAFQSQ 80 (166)
T ss_dssp ECEEEECCCCC
T ss_pred eeEEEEcCCCC
Confidence 99998876543
No 166
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.8e-13 Score=107.92 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=64.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..| +. +..+ .+ ||||+|.+.++|++|++ ||+..+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~-~~~~------------g~-~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM-DKDK------------GV-FAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE-CSSS------------CC-EEEEEESSHHHHHHHHT-CSCCEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE-cCCC------------Cc-EEEEEECCHHHHHHHHh-cCCeEEC
Confidence 46899999999999999999999999999998 32 2211 13 99999999999999999 9999999
Q ss_pred CCceEEEEeecC
Q 046325 310 RKGLRVRVLLRC 321 (442)
Q Consensus 310 ~~glrV~l~~~~ 321 (442)
++.|+|..+..+
T Consensus 71 g~~l~V~~a~~~ 82 (94)
T 2e5g_A 71 GHRLRVRPREQK 82 (94)
T ss_dssp TEECCCBCSCCS
T ss_pred CEEEEEEECCcC
Confidence 888888865543
No 167
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.7e-13 Score=106.21 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=58.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|.++ .+|||||+|++.++|++| ++....
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---------------~~g~afV~f~~~~~a~~~----~~~~~~ 64 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---------------FRAFAFVTFADDQIAQSL----CGEDLI 64 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---------------CCSCCEEECSCHHHHHHT----TTCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---------------CCCEEEEEECCHHHHHHH----hcCCce
Confidence 5799999999999999999999999999999998753 257999999999999754 455554
Q ss_pred CCceEEEEeec
Q 046325 310 RKGLRVRVLLR 320 (442)
Q Consensus 310 ~~glrV~l~~~ 320 (442)
..+++|.+...
T Consensus 65 ~~g~~l~v~~a 75 (88)
T 1wf0_A 65 IKGISVHISNA 75 (88)
T ss_dssp ETTEEEEEECC
T ss_pred eCCEEEEEEec
Confidence 45666665543
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=1.5e-12 Score=106.26 Aligned_cols=72 Identities=24% Similarity=0.336 Sum_probs=58.5
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
....+|||+|||+++|+++|+++|++||.|..|+|+++ .+|||||+|++.++|++ |++...
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---------------srGfaFV~F~~~~~A~~----~~~~~~ 69 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---------------FRAFAFVTFADDKVAQS----LCGEDL 69 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---------------CCSEEEEEESCHHHHHH----HTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---------------CCCEEEEEECCHHHHHH----HcCCCc
Confidence 35789999999999999999999999999999999763 25899999999999983 566666
Q ss_pred CCCceEEEEee
Q 046325 309 WRKGLRVRVLL 319 (442)
Q Consensus 309 ~~~glrV~l~~ 319 (442)
..++.+|.+..
T Consensus 70 ~~~g~~v~v~~ 80 (89)
T 3d2w_A 70 IIKGISVHISN 80 (89)
T ss_dssp EETTEEEEEEE
T ss_pred ccCCEEEEEEE
Confidence 55565555544
No 169
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.36 E-value=1.6e-12 Score=114.71 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=65.6
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccE-EEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLH-ALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~-AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
...|||+||++.+|+++|+++|++||.|..|+|... .+|| |||||++.++|++|++.||+..+.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---------------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~ 92 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---------------NNQFQALLQYADPVSAQHAKLSLDGQNIY 92 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---------------TTEEEEEEEESCHHHHHHHHHHHTTCEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---------------CCCcEEEEEECCHHHHHHHHHHcCCCeec
Confidence 356889999999999999999999999999998642 1366 999999999999999999999998
Q ss_pred C--CceEEEEeecC
Q 046325 310 R--KGLRVRVLLRC 321 (442)
Q Consensus 310 ~--~glrV~l~~~~ 321 (442)
+ ..|+|.++...
T Consensus 93 g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 93 NACCTLRIDFSKLT 106 (130)
T ss_dssp TTEEEEEEEECSCS
T ss_pred CCCcEEEEEecCCC
Confidence 7 56777776543
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=1.6e-12 Score=119.23 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=70.0
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.||+..+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~A~~A~~~l~~~~~ 95 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMK----------HKGFAFVEYEVPEAAQLALEQMNSVML 95 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-C----------CCSEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCc----------cCceEEEEeCCHHHHHHHHHHccCCee
Confidence 3579999999999999999999999999999999987654322 368999999999999999999999999
Q ss_pred CCCceEEEEeec
Q 046325 309 WRKGLRVRVLLR 320 (442)
Q Consensus 309 ~~~glrV~l~~~ 320 (442)
.++.|+|.....
T Consensus 96 ~g~~l~v~~~~~ 107 (216)
T 2qfj_A 96 GGRNIKVGRPSN 107 (216)
T ss_dssp C-CCCEEECCSC
T ss_pred CCeeEEEecCCC
Confidence 988888876543
No 171
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.36 E-value=1.7e-12 Score=112.05 Aligned_cols=89 Identities=21% Similarity=0.296 Sum_probs=69.0
Q ss_pred ccccCCCCchhhhccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHH
Q 046325 215 VRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTD 294 (442)
Q Consensus 215 VRRk~Pl~e~~~~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~e 294 (442)
.+|..++++.. .....++|||+|| ++++++|+++|+.||.|..|+|.+ .+|||||+|++.+
T Consensus 24 ~~r~~~~~~~~-~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~----------------~kg~aFV~f~~~~ 84 (121)
T 2bz2_A 24 FRRSDSFPERR-APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP----------------PRNCAFVTYEKME 84 (121)
T ss_dssp ------------CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET----------------TTTEEEEECSSHH
T ss_pred CCCCCCCCCCC-CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC----------------CCCEEEEEECCHH
Confidence 33444444322 2346799999996 699999999999999999999853 2589999999999
Q ss_pred HHHHHHHHhcCCcCCCCceEEEEeecCC
Q 046325 295 IAEKAVEKLNDERNWRKGLRVRVLLRCS 322 (442)
Q Consensus 295 dA~kAv~~Ln~~~~~~~glrV~l~~~~~ 322 (442)
+|++|++.||+..+.++.|+|.++....
T Consensus 85 ~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 85 SADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp HHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred HHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 9999999999999999999999987654
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.35 E-value=2.4e-12 Score=113.77 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=67.5
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
+.++|||+|||.++|+++|+++|+.||.|..|+|+++...+..+ .+|||||+|.+.++|++|++.|++..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~--------~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQ--------SKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCE--------EEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCC--------cceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 47899999999999999999999999999999998865432111 3689999999999999999999997765
Q ss_pred ---CCceEEEEee
Q 046325 310 ---RKGLRVRVLL 319 (442)
Q Consensus 310 ---~~glrV~l~~ 319 (442)
...+.|....
T Consensus 74 ~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 74 PGMHHPIQMKPAD 86 (175)
T ss_dssp TTCSSCCEEEECG
T ss_pred cCCccceEEcccc
Confidence 3445555543
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.35 E-value=2.5e-12 Score=114.58 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=67.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..+ . .++ ..+|||||+|.+.++|.+|++.||+..+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~--~~~----------~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---S--QDG----------KSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---C--SSS----------SCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---c--CCC----------CCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 467899999999999999999999999988776 1 111 1368999999999999999999999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|.++.++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9988999987654
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=2.1e-12 Score=112.83 Aligned_cols=75 Identities=24% Similarity=0.192 Sum_probs=64.2
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccE-EEEEeCCHHHHHHHHHHhcCCcCCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLH-ALVEYESTDIAEKAVEKLNDERNWR 310 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~-AFVEFes~edA~kAv~~Ln~~~~~~ 310 (442)
..|||+||++.+++++|+++|++||.|..|+|... .|| |||||++.++|++|++.||+..+.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----------------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----------------NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----------------SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----------------CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 34789999999999999999999999999998541 155 9999999999999999999999887
Q ss_pred C--ceEEEEeecCC
Q 046325 311 K--GLRVRVLLRCS 322 (442)
Q Consensus 311 ~--glrV~l~~~~~ 322 (442)
. .|+|.++..+.
T Consensus 90 ~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 90 GCCTLKIEYARPTR 103 (124)
T ss_dssp TBSEEEEECCSCSC
T ss_pred CCeEEEEEEecCCc
Confidence 4 67777766543
No 175
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=111.19 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=56.0
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
..++|||+|||.++++++|+++|++||.|. +.++.+..+... ...+|||||+|++.++|++||+.|+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~-------g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSY-------FPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCC-------SCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCC-------CCcccEEEEEECCHHHHHHHHHhhh
Confidence 578999999999999999999999999999 777665443100 0236899999999999999999985
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.35 E-value=1.9e-12 Score=116.88 Aligned_cols=82 Identities=11% Similarity=0.172 Sum_probs=70.4
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++. ++..+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~A~~A~~~-~~~~~ 79 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR----------SRGFGFVTYATVEEVDAAMNA-RPHKV 79 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHT-CSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCC----------ccceEEEEeCCHHHHHHHHhc-CCCEE
Confidence 3679999999999999999999999999999999988654332 368999999999999999965 88888
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|.|..+...
T Consensus 80 ~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 80 DGRVVEPKRAVSR 92 (196)
T ss_dssp TTEECEEEECCC-
T ss_pred CCEEeeeecccCc
Confidence 8888888887643
No 177
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.34 E-value=1e-12 Score=115.08 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=65.7
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeE--EEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVK--TIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~--~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
..++|||+|||+++|+++|+++|+.| .|. .|+|+++.. +. .+|||||+|++.++|++||+ +++..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-Gr----------srGfaFV~F~~~e~A~~Al~-~~~~~ 107 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GK----------ITGEAFVQFASQELAEKALG-KHKER 107 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SS----------SCSEEEEEESSTTHHHHHHT-TTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CC----------CceEEEEEECCHHHHHHHHH-HCCCE
Confidence 57899999999999999999999999 677 899987654 21 36899999999999999997 46688
Q ss_pred CCCCceEEEEee
Q 046325 308 NWRKGLRVRVLL 319 (442)
Q Consensus 308 ~~~~glrV~l~~ 319 (442)
+.++.|+|..+.
T Consensus 108 l~gR~I~V~~a~ 119 (126)
T 2hgm_A 108 IGHRYIEVFKSS 119 (126)
T ss_dssp BTTBCCCCEEEC
T ss_pred ECCEEEEEEECC
Confidence 888888887764
No 178
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=5.3e-13 Score=116.23 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=65.6
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCe----EEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSV----KTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V----~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
..++|||+|||+++|+++|+++|+.||.| ..|+|+++. ++ + .+|||||+|++.++|++||+. |+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~g--r--------~~G~aFV~F~~~~~A~~Al~~-~~ 89 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DG--R--------PTGDAFVLFACEEYAQNALRK-HK 89 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TS--C--------EEEEEEECCSSHHHHHHHHTT-TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CC--C--------EeeEEEEEECCHHHHHHHHHh-CC
Confidence 56899999999999999999999999975 689988763 22 2 368999999999999999975 88
Q ss_pred CcCCCCceEEEEee
Q 046325 306 ERNWRKGLRVRVLL 319 (442)
Q Consensus 306 ~~~~~~glrV~l~~ 319 (442)
..+.++-|.|..+.
T Consensus 90 ~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 90 DLLGKRYIELFRST 103 (123)
T ss_dssp EESSSCEECCEEEC
T ss_pred CeeCCeEEEEEECC
Confidence 88877777777654
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.4e-12 Score=107.85 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=65.3
Q ss_pred cce-EEcccCCCCCCHHH----HHHHHhcC-CCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 231 SCT-VVAENLPEDHSHQN----LEKIFGVV-GSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 231 ~rT-VyV~nLp~d~T~e~----LkelFs~~-G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
..| |||.|||+++++++ |+++|+.| |+|..|. .|+|||+|.+.++|++|++.||
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------------------gG~AfV~F~~~esA~~A~~~l~ 67 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------------------GCSAILRFINQDSAERAQKRME 67 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------------------TTCEEEEESSHHHHHHHHHHHT
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------------------cCEEEEEECCHHHHHHHHHHhc
Confidence 455 99999999999988 55899999 5999881 1699999999999999999999
Q ss_pred CCcCCCCceEEEEeecCCCc
Q 046325 305 DERNWRKGLRVRVLLRCSPK 324 (442)
Q Consensus 305 ~~~~~~~glrV~l~~~~~~k 324 (442)
+..+.++.|+|.++..+...
T Consensus 68 G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 68 NEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp TCCSSSSCCEEESSCCSCCC
T ss_pred CCccCCceEEEEecCCCcce
Confidence 99999999999999876543
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.30 E-value=8.1e-12 Score=105.59 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=68.5
Q ss_pred ccceEEcccCCC-----CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 230 QSCTVVAENLPE-----DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 230 ~~rTVyV~nLp~-----d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
.+++|+|.|+.. +.++++|+++|++||.|..|.|+++.... . ..+|||||+|++.++|.+|++.||
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~-~--------~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAP-D--------DEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCC-T--------TTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCC-C--------CCcEEEEEEECCHHHHHHHHHHHC
Confidence 578999999952 34789999999999999999998764321 1 136899999999999999999999
Q ss_pred CCcCCCCceEEEEeec
Q 046325 305 DERNWRKGLRVRVLLR 320 (442)
Q Consensus 305 ~~~~~~~glrV~l~~~ 320 (442)
+..+.++.|+|.++..
T Consensus 78 G~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 78 GRYFGGRVVKACFYNL 93 (105)
T ss_dssp TCEETTEECEEEECCH
T ss_pred CCEECCcEEEEEEcCH
Confidence 9999999999998753
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.30 E-value=4e-12 Score=122.82 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=68.9
Q ss_pred cccceEEcccCCCCC---------CHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHH
Q 046325 229 LQSCTVVAENLPEDH---------SHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKA 299 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~---------T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kA 299 (442)
...+||||+||+.++ ++++|+++|++||.|..|+|+. .||||||+|.+.++|++|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----------------~kG~AFV~F~~~~~Ae~A 195 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----------------SKNCGFVKFKYQANAEFA 195 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----------------GGTEEEEEESSHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----------------CCCEEEEEeCCHHHHHHH
Confidence 357999999999988 7999999999999999999975 258999999999999999
Q ss_pred HHHhcCCcC------------CCCceEEEEeecCC
Q 046325 300 VEKLNDERN------------WRKGLRVRVLLRCS 322 (442)
Q Consensus 300 v~~Ln~~~~------------~~~glrV~l~~~~~ 322 (442)
++.|++..+ .++.|.|+.+....
T Consensus 196 ~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 196 KEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred HHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 999999998 67889999987644
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.30 E-value=7.1e-12 Score=120.49 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=71.7
Q ss_pred cccceEEcccCCCCCCHHHHH----HHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 229 LQSCTVVAENLPEDHSHQNLE----KIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~Lk----elFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
...++|||+|||.++++++|+ ++|+.||.|..|+|++.. ..+|||||+|.+.++|++|++.||
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~-------------~~~g~afV~f~~~~~a~~A~~~l~ 73 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL-------------KMRGQAFVIFKEVSSATNALRSMQ 73 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC-------------CcceEEEEEECCHHHHHHHHHHhc
Confidence 468999999999999999977 899999999999997622 136899999999999999999999
Q ss_pred CCcCCCCceEEEEeecCC
Q 046325 305 DERNWRKGLRVRVLLRCS 322 (442)
Q Consensus 305 ~~~~~~~glrV~l~~~~~ 322 (442)
+..++++.|+|.++....
T Consensus 74 g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 74 GFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred CCeeCCcEEEEEEeccCc
Confidence 999999999999986544
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.28 E-value=4.5e-12 Score=115.49 Aligned_cols=78 Identities=26% Similarity=0.350 Sum_probs=70.8
Q ss_pred ccceEEcccCCC-CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPE-DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~-d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||. ++++++|+++|+.||.|..|+|+++. +|||||+|.+.++|++|++.||+..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---------------~g~afV~f~~~~~a~~A~~~l~~~~~ 66 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---------------KENALVQMADGNQAQLAMSHLNGHKL 66 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---------------SSCCEEECTTTHHHHHHHHHHTTCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---------------CCEEEEEECCHHHHHHHHHHhCCCee
Confidence 468999999999 99999999999999999999997642 47999999999999999999999999
Q ss_pred CCCceEEEEeecCC
Q 046325 309 WRKGLRVRVLLRCS 322 (442)
Q Consensus 309 ~~~glrV~l~~~~~ 322 (442)
.++.|+|..+....
T Consensus 67 ~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 67 HGKPIRITLSKHQN 80 (198)
T ss_dssp SSCCCEEEECCCCS
T ss_pred cCeEEEEEEecCCC
Confidence 99999999877543
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.28 E-value=8.7e-12 Score=117.37 Aligned_cols=78 Identities=26% Similarity=0.341 Sum_probs=71.2
Q ss_pred cccceEEcccCCC-CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 229 LQSCTVVAENLPE-DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 229 ~~~rTVyV~nLp~-d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
...++|||+|||. ++++++|+++|+.||.|..|+|+++. +|||||+|.+.++|++|++.||+..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---------------~g~afV~F~~~~~A~~Ai~~l~g~~ 96 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---------------KENALVQMADGNQAQLAMSHLNGHK 96 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---------------SCCEEEEESCHHHHHHHHHHHTTCB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---------------CCEEEEEECCHHHHHHHHHHhCCCe
Confidence 4679999999999 99999999999999999999997742 4799999999999999999999999
Q ss_pred CCCCceEEEEeecC
Q 046325 308 NWRKGLRVRVLLRC 321 (442)
Q Consensus 308 ~~~~glrV~l~~~~ 321 (442)
+.++.|+|.++...
T Consensus 97 ~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 97 LHGKPIRITLSKHQ 110 (229)
T ss_dssp CSSSBCEEECCSCC
T ss_pred ECCeEEEEEEecCc
Confidence 99999999987654
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.27 E-value=9.4e-12 Score=119.62 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=68.6
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|..+. +|||||+|.+.++|.+|++.||+..++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---------------~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---------------HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---------------CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 47899999999999999999999999999999997532 479999999999999999999999998
Q ss_pred -CCceEEEEee
Q 046325 310 -RKGLRVRVLL 319 (442)
Q Consensus 310 -~~glrV~l~~ 319 (442)
++.|+|.+++
T Consensus 271 ~g~~l~v~~ak 281 (282)
T 3pgw_A 271 QNNAMKISFAK 281 (282)
T ss_pred CCCEEEEEEec
Confidence 8889998875
No 186
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.27 E-value=6.9e-12 Score=110.43 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=64.2
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
+.++|||+|||.++|+++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++. ...+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~a~~A~~~--~~~~~ 69 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR----------SRGFGFLSFEKPSSVDEVVKT--QHILD 69 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSS----------CCSCEEEEESSTHHHHHHHHS--CCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCC----------ccceEEEEEccHHHHHHHHhc--ccccC
Confidence 478999999999999999999999999999999987654332 368999999999999999984 34555
Q ss_pred CCceEEEEee
Q 046325 310 RKGLRVRVLL 319 (442)
Q Consensus 310 ~~glrV~l~~ 319 (442)
++.|.|..+.
T Consensus 70 g~~i~v~~~~ 79 (167)
T 2cjk_A 70 GKVIDPKRAI 79 (167)
T ss_dssp TEECCCEECC
T ss_pred CeEccccccc
Confidence 5566666543
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.26 E-value=9.2e-12 Score=120.29 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=71.8
Q ss_pred cccceEEcccCCCC-CCHHHHHHHHhcCCCeEEEEEeCCCC-CCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 229 LQSCTVVAENLPED-HSHQNLEKIFGVVGSVKTIRICHPPE-SNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 229 ~~~rTVyV~nLp~d-~T~e~LkelFs~~G~V~~Vri~r~~~-~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
...++|||+|||.+ +++++|+++|+.||.|..|+|+++.. ++ ..+|||||+|.+.++|.+|+ .||+.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg----------~~~g~afV~F~~~~~A~~A~-~l~g~ 276 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHS----------FNNCCAFMVFENKDSAERAL-QMNRS 276 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-------------CCCEEEEEEESSHHHHHHHG-GGTTE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCC----------CCceEEEEEeCCHHHHHHHH-HhcCC
Confidence 35789999999999 99999999999999999999987543 12 13689999999999999999 99999
Q ss_pred cCCCCceEEEEeecC
Q 046325 307 RNWRKGLRVRVLLRC 321 (442)
Q Consensus 307 ~~~~~glrV~l~~~~ 321 (442)
.+.++.|+|.++.++
T Consensus 277 ~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 277 LLGNREISVSLADKK 291 (292)
T ss_dssp EETTEEEEEEECCCC
T ss_pred EECCcEEEEEEecCC
Confidence 999999999988754
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.23 E-value=4e-11 Score=112.81 Aligned_cols=76 Identities=25% Similarity=0.326 Sum_probs=68.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVG-SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G-~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||.++++++|+++|+.|| .|..|+|... .+|||||+|.+.++|.+|++.||+..+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---------------~~g~afV~f~~~~~A~~Ai~~l~g~~~ 214 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---------------DRKMALIQMGSVEEAVQALIDLHNHDL 214 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS---------------STTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC---------------CCcEEEEEECCHHHHHHHHHHHCCCcc
Confidence 368999999999999999999999999 9999998542 147999999999999999999999999
Q ss_pred C-CCceEEEEeec
Q 046325 309 W-RKGLRVRVLLR 320 (442)
Q Consensus 309 ~-~~glrV~l~~~ 320 (442)
. ++.|+|.++.+
T Consensus 215 ~~g~~l~v~~a~~ 227 (229)
T 2adc_A 215 GENHHLRVSFSKS 227 (229)
T ss_dssp SSSCBCEEEECSS
T ss_pred CCCCeEEEEEecC
Confidence 8 88999998764
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.23 E-value=2.1e-11 Score=117.26 Aligned_cols=84 Identities=23% Similarity=0.271 Sum_probs=73.7
Q ss_pred cccceEEcccCCCCC-CHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 229 LQSCTVVAENLPEDH-SHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~-T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
...++|||+|||.++ ++++|+++|+.||.|..|+|.++.. + ..+|+|||+|.+.++|.+|+..||+..
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-g----------~~~g~afV~f~~~~~A~~A~~~l~g~~ 250 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD-G----------QLKGFAVLEYETAEMAEEAQQQADGLS 250 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS-C----------CEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC-C----------CcccEEEEEeCCHHHHHHHHHHhCCCc
Confidence 467899999999995 9999999999999999999887542 1 236899999999999999999999999
Q ss_pred CCCCceEEEEeecCCC
Q 046325 308 NWRKGLRVRVLLRCSP 323 (442)
Q Consensus 308 ~~~~glrV~l~~~~~~ 323 (442)
+.++.|+|.++.++..
T Consensus 251 ~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 251 LGGSHLRVSFCAPGPP 266 (284)
T ss_dssp ETTEECEEEECCSSSC
T ss_pred cCCeEEEEEEecCCCc
Confidence 9999999999876544
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.23 E-value=1.8e-11 Score=117.52 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=69.3
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..||+..+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----------------RGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----------------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----------------CcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 46789999999999999999999999999999999652 47999999999999999999999999
Q ss_pred CCCceEEEEeec
Q 046325 309 WRKGLRVRVLLR 320 (442)
Q Consensus 309 ~~~glrV~l~~~ 320 (442)
.++.|+|..+..
T Consensus 84 ~g~~l~v~~a~~ 95 (261)
T 3sde_A 84 KSRPLRIRFATH 95 (261)
T ss_dssp TTEECEEEECCC
T ss_pred CCceeEeeeccc
Confidence 988899987653
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.22 E-value=2.4e-11 Score=110.71 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=69.1
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVG-SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G-~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..++|||+|||.++++++|+++|+.|| .|..|+|.... +|+|||+|.+.++|.+|+..||+..+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---------------~g~afV~f~~~~~A~~A~~~l~g~~~ 183 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---------------RKMALIQMGSVEEAVQALIDLHNHDL 183 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---------------SSCEEEECSSHHHHHHHHHHHTSSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---------------CcEEEEEeCCHHHHHHHHHHhcCCcc
Confidence 378999999999999999999999999 99999986521 47999999999999999999999999
Q ss_pred C-CCceEEEEeec
Q 046325 309 W-RKGLRVRVLLR 320 (442)
Q Consensus 309 ~-~~glrV~l~~~ 320 (442)
. ++.|+|.++.+
T Consensus 184 ~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 184 GENHHLRVSFSKS 196 (198)
T ss_dssp SSCCSCCEEEECC
T ss_pred CCCCeEEEEeecc
Confidence 8 88999998764
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.21 E-value=4.1e-11 Score=115.27 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=73.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++++++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|.+|++.|++..+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~----------~~g~afV~f~~~~~a~~A~~~l~~~~~~ 163 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ----------SKGYGFAEYMKKDSAARAKSDLLGKPLG 163 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC----------EEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc----------cceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 468999999999999999999999999999999987654332 3689999999999999999999999999
Q ss_pred CCceEEEEeecCC
Q 046325 310 RKGLRVRVLLRCS 322 (442)
Q Consensus 310 ~~glrV~l~~~~~ 322 (442)
++.|+|..+....
T Consensus 164 g~~i~v~~a~~~~ 176 (284)
T 3smz_A 164 PRTLYVHWTDAGQ 176 (284)
T ss_dssp TEECEEEECCGGG
T ss_pred CcEEEEEECCCCC
Confidence 9999998876543
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=3.5e-11 Score=101.66 Aligned_cols=78 Identities=10% Similarity=0.137 Sum_probs=65.6
Q ss_pred ccceEEcccCCCCC-----------CHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHH
Q 046325 230 QSCTVVAENLPEDH-----------SHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEK 298 (442)
Q Consensus 230 ~~rTVyV~nLp~d~-----------T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~k 298 (442)
.+++|+|.||.... ++++|+++|++||.|..|.|+.. . .+|||||+|.+.++|++
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-~-------------~~G~afV~f~~~~~A~~ 79 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-H-------------PDGVASVSFRDPEEADY 79 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-C-------------TTCEEEEECSCHHHHHH
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-C-------------CCEEEEEEECCHHHHHH
Confidence 58999999994322 26899999999999999977432 1 25899999999999999
Q ss_pred HHHHhcCCcCCCCceEEEEeecC
Q 046325 299 AVEKLNDERNWRKGLRVRVLLRC 321 (442)
Q Consensus 299 Av~~Ln~~~~~~~glrV~l~~~~ 321 (442)
|++.||+..+.++.|+|.++..+
T Consensus 80 Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 80 CIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHSTTCEETTEECEEEECCSC
T ss_pred HHHHcCCCEECCcEEEEEEeCCC
Confidence 99999999999999999987653
No 194
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.3e-11 Score=109.04 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=67.0
Q ss_pred ceEEcccC----CCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCC----HHH----HHHH
Q 046325 232 CTVVAENL----PEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYES----TDI----AEKA 299 (442)
Q Consensus 232 rTVyV~nL----p~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes----~ed----A~kA 299 (442)
..|||+|| |+.+++++|+++|++||+|..+.+..+..++.+ +|||||+|.+ +++ |.+|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~s----------lGfgfVef~d~~g~~d~a~kAA~kA 72 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALP----------LHVYLIKYASSDGKINDAAKAAFSA 72 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCE----------EEEEEEECC------CCHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCce----------eeEEEEEECCCCCCcchHHHHHHHH
Confidence 57999999 999999999999999999999999988776533 6899999996 333 8999
Q ss_pred HH--HhcCCcCCCCceEEEEee
Q 046325 300 VE--KLNDERNWRKGLRVRVLL 319 (442)
Q Consensus 300 v~--~Ln~~~~~~~glrV~l~~ 319 (442)
+. .||+..+.++.|+|.+..
T Consensus 73 i~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 73 VRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHTTTTCEEETTEEEEEEECC
T ss_pred HHHhhhcCCeecCcEEEEEECc
Confidence 98 789999999999998743
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.19 E-value=3.9e-11 Score=115.23 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=68.3
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCC
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNW 309 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~ 309 (442)
..++|||+|||.++|+++|+++|+.||.|..|+|+.+. ++ ..+|||||+|.+.++|.+|+..||+..+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g----------~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RG----------RATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TS----------CEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CC----------CcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 36799999999999999999999999999999998763 22 13689999999999999999999654433
Q ss_pred ----CCceEEEEeecC
Q 046325 310 ----RKGLRVRVLLRC 321 (442)
Q Consensus 310 ----~~glrV~l~~~~ 321 (442)
++.|.|..+...
T Consensus 164 ~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SSSSCCBCEEEECCCE
T ss_pred ecCCCceEEEeecccc
Confidence 678888887654
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.18 E-value=5.1e-11 Score=100.56 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=67.9
Q ss_pred ccceEEcccC--CCCC--------CHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHH
Q 046325 230 QSCTVVAENL--PEDH--------SHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKA 299 (442)
Q Consensus 230 ~~rTVyV~nL--p~d~--------T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kA 299 (442)
.+++|++.|+ |.+. .+++|++.|++||.|..|.|+++......+ .+|+|||+|++.++|.+|
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~--------~~G~~fV~f~~~~~A~~A 75 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVP--------GCGKIFVEFTSVFDCQKA 75 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCT--------TTTEEEEEESSHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcC--------CcEEEEEEECCHHHHHHH
Confidence 5788888887 4443 357999999999999999998875432221 368999999999999999
Q ss_pred HHHhcCCcCCCCceEEEEee
Q 046325 300 VEKLNDERNWRKGLRVRVLL 319 (442)
Q Consensus 300 v~~Ln~~~~~~~glrV~l~~ 319 (442)
+..||+..+.++.|+|.+..
T Consensus 76 i~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 76 MQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHTTCEETTEECEEEEEC
T ss_pred HHHhCCCEeCCCEEEEEEeC
Confidence 99999999999999998864
No 197
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.18 E-value=3.5e-11 Score=106.37 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=65.4
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcC----C-------CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHH
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVV----G-------SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEK 298 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~----G-------~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~k 298 (442)
+.++|||+|||.++|+++|+++|+.| | .|..+++.+. +|||||+|.+.++|++
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----------------~g~afV~f~~~~~A~~ 66 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----------------KNFAFLEFRSVDETTQ 66 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----------------TTEEEEEESSHHHHHH
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----------------CCEEEEEeCCHHHHHH
Confidence 57999999999999999999999999 7 7888887542 5799999999999999
Q ss_pred HHHHhcCCcCCCCceEEEEeec
Q 046325 299 AVEKLNDERNWRKGLRVRVLLR 320 (442)
Q Consensus 299 Av~~Ln~~~~~~~glrV~l~~~ 320 (442)
|+ .||+..+.++.|+|.....
T Consensus 67 A~-~~~~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 67 AM-AFDGIIFQGQSLKIRRPHD 87 (172)
T ss_dssp HG-GGTTCEETTEECEEECCSS
T ss_pred HH-HhCCcEecCceeeecCCcc
Confidence 99 8999999888888876543
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.16 E-value=4.6e-11 Score=111.76 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=64.8
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCe--EEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSV--KTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V--~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
..++|||+|||.++|+++|+++|+.||.| ..|+|..+.. ..+|||||+|++.++|.+||..||+..
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~------------~~~g~gfV~f~~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS------------ERSSSGLLEWDSKSDALETLGFLNHYQ 189 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS------------SSSEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC------------CCceEEEEEeCCHHHHHHHHHHhCCCC
Confidence 35789999999999999999999999999 8999876431 124899999999999999999999988
Q ss_pred CCCCc----eEEEEe
Q 046325 308 NWRKG----LRVRVL 318 (442)
Q Consensus 308 ~~~~g----lrV~l~ 318 (442)
+.+.+ +.|+++
T Consensus 190 ~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 190 MKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECCSSSSSCEECEEE
T ss_pred ccCCCCCcceEEEec
Confidence 77653 555554
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.15 E-value=5.5e-11 Score=114.83 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=66.5
Q ss_pred ccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 228 ELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 228 ~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
+...++|||+|||.++|+++|+++|+.||.|..|+|+++... .+|||||+|.+.++|++|+ .||+..
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~------------~~g~afV~f~~~~~A~~A~-~~~~~~ 104 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK------------NFRFARIEFARYDGALAAI-TKTHKV 104 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS------------SSEEEEEEESSHHHHHHHH-TTTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC------------CcEEEEEEECCHHHHHHHH-HhCCcE
Confidence 346899999999999999999999999999999999875431 2589999999999999999 599999
Q ss_pred CCCCceEEEEe
Q 046325 308 NWRKGLRVRVL 318 (442)
Q Consensus 308 ~~~~glrV~l~ 318 (442)
+.++.|+|...
T Consensus 105 ~~g~~i~v~~~ 115 (292)
T 2ghp_A 105 VGQNEIIVSHL 115 (292)
T ss_dssp ETTEECEEEEC
T ss_pred eCCcEEEEEEC
Confidence 98888888764
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.14 E-value=4.6e-11 Score=107.95 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=64.5
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcC----C-------CeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHH
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVV----G-------SVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEK 298 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~----G-------~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~k 298 (442)
..++|||+|||.++|+++|+++|+.| | .|..+.+.+ .+|||||+|.+.++|++
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~----------------~~g~afV~F~~~~~A~~ 66 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----------------DKNFAFLEFRSVDETTQ 66 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET----------------TTTEEEEEESCSHHHHH
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC----------------CCCEEEEEeCCHHHHHH
Confidence 47999999999999999999999999 5 677777643 25899999999999999
Q ss_pred HHHHhcCCcCCCCceEEEEeecC
Q 046325 299 AVEKLNDERNWRKGLRVRVLLRC 321 (442)
Q Consensus 299 Av~~Ln~~~~~~~glrV~l~~~~ 321 (442)
|+ .||+..+.++.|+|..+...
T Consensus 67 Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 67 AM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp HG-GGTTEEETTEEEEEECCCCC
T ss_pred HH-HhcCCEEcCceEEEeCCCCC
Confidence 99 89999998888888766543
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.09 E-value=1.9e-10 Score=99.41 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=67.6
Q ss_pred ccceEEcccC--CCC---CCHHHHHHHHhcCCCeEEEEEeCCCCCC--CCCcccccccCcccEEEEEeCCHHHHHHHHHH
Q 046325 230 QSCTVVAENL--PED---HSHQNLEKIFGVVGSVKTIRICHPPESN--SSRAKSDFFVSNKLHALVEYESTDIAEKAVEK 302 (442)
Q Consensus 230 ~~rTVyV~nL--p~d---~T~e~LkelFs~~G~V~~Vri~r~~~~~--~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~ 302 (442)
.+++|++.|+ |.+ -.+++|++.|++||.|..|.|+++.... .. ..+|++||+|++.++|.+|+..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~--------~~~G~~FV~F~~~e~A~~Ai~~ 90 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDA--------EIIVKIFVEFSIASETHKAIQA 90 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTC--------EEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCC--------cceEEEEEEECCHHHHHHHHHH
Confidence 5788999988 322 3478999999999999999998865321 11 1368999999999999999999
Q ss_pred hcCCcCCCCceEEEEee
Q 046325 303 LNDERNWRKGLRVRVLL 319 (442)
Q Consensus 303 Ln~~~~~~~glrV~l~~ 319 (442)
||+..+.++.|+|.+..
T Consensus 91 LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 91 LNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HTTCEETTEECEEEEEC
T ss_pred HCCCEECCcEEEEEEcC
Confidence 99999999999999864
No 202
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.07 E-value=2.6e-11 Score=107.91 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=65.2
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...++|||+|||.++++++|+++|+.||.|..+.|... .+ ...+|||||+|.+.++|++|+ .||+..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~-~~----------~~~~g~afV~f~~~~~a~~A~-~l~g~~~ 78 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV-RT----------GTNRKFGYVDFESAEDLEKAL-ELTGLKV 78 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEE-EE----------ETTTTEEEEEESSHHHHHHHH-HGGGEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEEC-CC----------CccccEEEEEECCHHHHHHHH-hcCCCEe
Confidence 36899999999999999999999999998755322211 11 123689999999999999999 5999999
Q ss_pred CCCceEEEEeecC
Q 046325 309 WRKGLRVRVLLRC 321 (442)
Q Consensus 309 ~~~glrV~l~~~~ 321 (442)
.++.|+|..+...
T Consensus 79 ~g~~l~v~~~~~~ 91 (175)
T 1fje_B 79 FGNEIKLEKPKGR 91 (175)
T ss_dssp TTEEEEEECCCCS
T ss_pred CCeEEEEecCCCc
Confidence 9888888877643
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.06 E-value=1.7e-10 Score=116.81 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=62.4
Q ss_pred ccceEEccc--CCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 046325 230 QSCTVVAEN--LPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDER 307 (442)
Q Consensus 230 ~~rTVyV~n--Lp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~ 307 (442)
..++|||+| |+..+|+++|+++|++||+|+.|.|.. .||||||+|++.++|++|++.||+..
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----------------~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----------------NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----------------TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----------------CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 578999999 578999999999999999999998853 15799999999999999999999987
Q ss_pred CC---CC--ceEEEEee
Q 046325 308 NW---RK--GLRVRVLL 319 (442)
Q Consensus 308 ~~---~~--glrV~l~~ 319 (442)
+. ++ .|.|.++.
T Consensus 81 ~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 81 VVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EECTTSCEEECEEEECS
T ss_pred cccccCCceEEEEEEee
Confidence 74 23 35555553
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=5.5e-10 Score=93.85 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEeec
Q 046325 241 EDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLLR 320 (442)
Q Consensus 241 ~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~~~ 320 (442)
.++++++|+++|++||.|..|+|+.. .+|||||+|++.++|++|++.+++ +.++.|+|.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~---------------~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSK---------------KPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESS---------------SSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccC---------------CCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 56899999999999999999999731 258999999999999999988654 4577899998776
Q ss_pred CCC
Q 046325 321 CSP 323 (442)
Q Consensus 321 ~~~ 323 (442)
+..
T Consensus 90 ~~~ 92 (100)
T 2d9o_A 90 QPQ 92 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.04 E-value=5.1e-10 Score=96.17 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=64.1
Q ss_pred ccceEEcccC--CCCC--------CHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHH
Q 046325 230 QSCTVVAENL--PEDH--------SHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKA 299 (442)
Q Consensus 230 ~~rTVyV~nL--p~d~--------T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kA 299 (442)
.+++|++.|+ +.+. .+++|++.|++||.|..|.|+++. .+|+|||+|++.++|.+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--------------~~G~~fV~f~~~e~A~~A 71 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--------------AQGNVYVKCPSIAAAIAA 71 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--------------TTCCEEEECSSHHHHHHH
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--------------CcEEEEEEECCHHHHHHH
Confidence 4678888887 3321 356889999999999999997642 158999999999999999
Q ss_pred HHHhcCCcCCCCceEEEEee
Q 046325 300 VEKLNDERNWRKGLRVRVLL 319 (442)
Q Consensus 300 v~~Ln~~~~~~~glrV~l~~ 319 (442)
+..||+..+.++.|+|.+..
T Consensus 72 i~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 72 VNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHTTCEETTEECEEEEEC
T ss_pred HHHhCCCEECCEEEEEEEEc
Confidence 99999999999999999874
No 206
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.03 E-value=1.2e-10 Score=98.06 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=57.1
Q ss_pred cccCCCCCCHHHHHHHH------------hcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHh
Q 046325 236 AENLPEDHSHQNLEKIF------------GVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKL 303 (442)
Q Consensus 236 V~nLp~d~T~e~LkelF------------s~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~L 303 (442)
+.||+.++++++|+++| ++||.|..|.|+++.. . ..+|||||+|++.++|++|+..|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~----------~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-D----------HLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-S----------SSEEEEEEEESCHHHHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-C----------CccEEEEEEECCHHHHHHHHHHH
Confidence 44555556666665555 9999999999987542 1 13689999999999999999999
Q ss_pred cCCcCCCCceEEEEe
Q 046325 304 NDERNWRKGLRVRVL 318 (442)
Q Consensus 304 n~~~~~~~glrV~l~ 318 (442)
|+..+.++.|+|.++
T Consensus 89 ng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 89 NNRWFNGQPIHAELS 103 (104)
T ss_dssp TTCEETTEECCEEEC
T ss_pred CCCEECCEEEEEEEc
Confidence 999999988888764
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=5e-09 Score=91.32 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=62.5
Q ss_pred cccceEEcccCCCC-CCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCC-HHHHHHHHHHhcCC
Q 046325 229 LQSCTVVAENLPED-HSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYES-TDIAEKAVEKLNDE 306 (442)
Q Consensus 229 ~~~rTVyV~nLp~d-~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes-~edA~kAv~~Ln~~ 306 (442)
...+.|||+||+.+ ++.++|+++|+.||+|+.|.+.++. -.|||+|.+ .++|.+|++.||+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----------------~tgfVrf~~~~~~A~~av~~ln~~ 79 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----------------KEGIILFKEKAKEALGKAKDANNG 79 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----------------SEEEEEESSCHHHHHHHHHHTTTS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----------------CEEEEEECCChHHHHHHHHHhhcC
Confidence 36899999999999 9999999999999999999997643 279999999 89999999999755
Q ss_pred cC--CCCceEEEEee
Q 046325 307 RN--WRKGLRVRVLL 319 (442)
Q Consensus 307 ~~--~~~glrV~l~~ 319 (442)
.. .+.-++++++.
T Consensus 80 ~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 80 NLQLRNKEVTWEVLE 94 (121)
T ss_dssp CBCTTSSSEEEEECC
T ss_pred CcEEeCcEEEEEECC
Confidence 43 34446666554
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=2.1e-07 Score=77.19 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=59.6
Q ss_pred ccceEEcccCCC---C--CC---HHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHH
Q 046325 230 QSCTVVAENLPE---D--HS---HQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 301 (442)
Q Consensus 230 ~~rTVyV~nLp~---d--~T---~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~ 301 (442)
..-||+|.-.+. . .. ..+|.+.|++||.|..||+..+ .+||+|.+.++|.+|++
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d------------------~~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED------------------KMWVTFLEGSSALNVLS 67 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS------------------SEEEEESSHHHHHHGGG
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC------------------CEEEEECChHHHHHHHh
Confidence 346777776551 1 22 4689999999999999999763 48999999999999997
Q ss_pred HhcCCcCCCCceEEEEeecC
Q 046325 302 KLNDERNWRKGLRVRVLLRC 321 (442)
Q Consensus 302 ~Ln~~~~~~~glrV~l~~~~ 321 (442)
||+..+.++.|+|.++.+.
T Consensus 68 -mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 68 -LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp -GTTCEETTEEEEEEECCCS
T ss_pred -cCCeEeCCeEEEEEeCCCC
Confidence 9999999999999987754
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.44 E-value=4e-07 Score=84.95 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcCCCCceEEEEee
Q 046325 242 DHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERNWRKGLRVRVLL 319 (442)
Q Consensus 242 d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~~~~glrV~l~~ 319 (442)
+..+++|.+.|++||.|..|.|+++....... ...+|++||+|.+.++|.+|+..||+..+.++.|+|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~------~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEED------AEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTT------CCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccC------cCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34578999999999999999998764332110 1236899999999999999999999999999999999864
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=1.7e-06 Score=72.23 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=58.2
Q ss_pred ccceEEcccCCCC------CC---HHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHH
Q 046325 230 QSCTVVAENLPED------HS---HQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAV 300 (442)
Q Consensus 230 ~~rTVyV~nLp~d------~T---~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv 300 (442)
..-||+|.-++.+ .. ..+|.+.|..||.|..|||..+ -+||+|.+.++|.+||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d------------------~~fVtF~d~~sAl~AI 75 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG------------------QMLVTFADSHSALSVL 75 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT------------------EEEEECSCSHHHHHHH
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC------------------cEEEEEcChHHHHHHH
Confidence 4578888877532 22 3579999999999999999764 4899999999999999
Q ss_pred HHhcCCcCCCCceEEEEe
Q 046325 301 EKLNDERNWRKGLRVRVL 318 (442)
Q Consensus 301 ~~Ln~~~~~~~glrV~l~ 318 (442)
+ ||+..+.++.|+|.+.
T Consensus 76 ~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 76 D-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp H-GGGSEETTEEEEEECC
T ss_pred h-cCCeeeCCeEEEEecc
Confidence 7 9999999998998864
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=9e-05 Score=63.47 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=64.6
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcC-----CCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVV-----GSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~-----G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
..+||-+-|||..++...|+.|...+ |.|+.|-+..+. +-|+|||.+..+|-||.-.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----------------~GAivef~d~~~AgKasLaL~ 83 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----------------NGAIIIFRDSKFAAKMLMILN 83 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----------------TEEEEECSCHHHHHHHHHHHS
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----------------CceEEEEccchhhHHHHhhcC
Confidence 47999999999999999999999999 999999987643 479999999999999999999
Q ss_pred CCcCCCCceEEEE
Q 046325 305 DERNWRKGLRVRV 317 (442)
Q Consensus 305 ~~~~~~~glrV~l 317 (442)
+..+.++.|+|--
T Consensus 84 G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 84 GSQFQGKVIRSGT 96 (117)
T ss_dssp SEEETTEEEEEEC
T ss_pred CeeecCeEEEecC
Confidence 9999987777654
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.14 E-value=0.0087 Score=50.11 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=44.2
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
..++| +||......||..+|+.||-| .|+.+.+ ..|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-----------------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----------------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-----------------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-----------------CeEEEEecCHHHHHHHHHhcc
Confidence 34556 999999999999999999954 3444332 489999999999999998775
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.06 E-value=0.042 Score=46.33 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=52.7
Q ss_pred cceEEcccCCCCCCHHHHHHHHhc-----CCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGV-----VGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~-----~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
.++|.|.|||+++.++.|+-+|+. =|.|..|.... ..|+|+|.+.+.|++.++. ..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------------------~~AvItF~d~~va~rVL~k-~~ 68 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------------------CGGVLTFREPADAERVLAQ-AD 68 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------------------TEEEEEESSHHHHHHHHTC-SC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------------------CcEEEEEcChHHHHHHhcC-Cc
Confidence 578999999999999999999987 26899998643 3799999999999999852 12
Q ss_pred CcCCCCceEEEE
Q 046325 306 ERNWRKGLRVRV 317 (442)
Q Consensus 306 ~~~~~~glrV~l 317 (442)
..+.+..|.|.-
T Consensus 69 H~L~~~~LsV~P 80 (104)
T 2dhx_A 69 HELHGAQLSLRP 80 (104)
T ss_dssp CBSSSSBCEEEE
T ss_pred ceecCeEEEEEc
Confidence 334444555544
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.90 E-value=0.012 Score=49.79 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=60.6
Q ss_pred cceEEcccCCCCC----C-HHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcC
Q 046325 231 SCTVVAENLPEDH----S-HQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLND 305 (442)
Q Consensus 231 ~rTVyV~nLp~d~----T-~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~ 305 (442)
..||+|.||+.++ . .+.++++|..|+++......+-- + =..|.|.+.++|.+|-..|++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF---------------R-Rirv~F~~~~~A~~AR~~Lh~ 68 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF---------------K-RVRINFSNPLSAADARLRLHK 68 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT---------------T-EEEEECSSTTHHHHHHHTSTT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc---------------e-EEEEEeCChHHHHHHHHHhcc
Confidence 4689999998754 2 36889999999988777765421 1 357999999999999999999
Q ss_pred CcCCCCceEEEEeec
Q 046325 306 ERNWRKGLRVRVLLR 320 (442)
Q Consensus 306 ~~~~~~glrV~l~~~ 320 (442)
..+.+..|+|.++..
T Consensus 69 ~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 69 TEFLGKEMKLYFAQT 83 (104)
T ss_dssp SEETTEECEEECCCC
T ss_pred ceecCceeEEEecCC
Confidence 999999999999773
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.74 E-value=0.011 Score=49.68 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=44.0
Q ss_pred eEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhc
Q 046325 233 TVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLN 304 (442)
Q Consensus 233 TVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln 304 (442)
.++| +||......+|..+|+.||-| .|+.+.+ ..|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-----------------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----------------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-----------------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-----------------CeEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999943 4554432 489999999999999998876
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.43 E-value=0.043 Score=47.37 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=51.2
Q ss_pred cccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 229 LQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 229 ~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
...+.|.|-+||... ...|...|++||.|....... ...+..|.|++..+|++|| ..|+..+
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----------------~~NWihI~Y~s~~~A~rAL-~kNG~ii 83 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----------------TGNWMHIRYQSKLQARKAL-SKDGRIF 83 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----------------SSSEEEEEESSHHHHHHHH-TTTTCEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----------------CCCeEEEEeCCHHHHHHHH-HhCCeEe
Confidence 357889999999874 788899999999999888621 1258899999999999999 4577665
Q ss_pred C
Q 046325 309 W 309 (442)
Q Consensus 309 ~ 309 (442)
.
T Consensus 84 ~ 84 (119)
T 1wwh_A 84 G 84 (119)
T ss_dssp T
T ss_pred c
Confidence 4
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.11 E-value=0.0091 Score=62.55 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=43.7
Q ss_pred hccccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHH
Q 046325 227 EELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 301 (442)
Q Consensus 227 ~~~~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~ 301 (442)
.+...|+|+|. +|...++.+|.++|++||+|.++-+-+.. ..||.|||.+.+++..++.
T Consensus 49 ~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~---------------g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 49 REQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF---------------GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS---------------SEEEEEECC---CCHHHHS
T ss_pred HHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC---------------CeEEEEEeCCHHHHHHHHh
Confidence 34457999998 79999999999999999999999885421 2599999999999987763
No 218
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.75 E-value=0.1 Score=42.89 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=54.1
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
..|+|++||...|++++.+.++.+..+...+.+....+. +... -.-|||.|.+.|++....+.+++..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~----~~~~----~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL----YPHM----YARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS----TTCC----CEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC----CCCc----ceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 358999999999999999999999988877765533211 1011 14699999999999999999998754
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.45 E-value=0.076 Score=46.06 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.5
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 282 NKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 282 ~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
.+|||||+|.+.++|++|++.+++...
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCC
Confidence 368999999999999999999886543
No 220
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=89.37 E-value=0.19 Score=56.45 Aligned_cols=89 Identities=30% Similarity=0.475 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHhcceeeccCCCCChhH----HHHhhhcCCCC--Cceecccccchh-HHHhhcc--------C----hHH
Q 046325 135 VLTDDLRAKIIKQVEYQFSDMSLLANE----TLSKHVNKDPE--GFVPLSVIGSMK-KIKSLVG--------N----NHL 195 (442)
Q Consensus 135 ~~~~~~~~~I~kQvEyYFSd~NL~~D~----fL~~~m~~d~e--G~Vpi~~i~sF~-kmK~Lt~--------d----~~~ 195 (442)
+++++-.+.|+.+|+|.|||+-|...+ +|+..+..+.+ |.||+++|+.+. |+-.++. | +..
T Consensus 102 ~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 181 (950)
T 3htx_A 102 LTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISY 181 (950)
T ss_dssp CCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHH
Confidence 566889999999999999999887764 45555555544 789999999984 6666554 1 356
Q ss_pred HHHHhhcCCceEEecCCccccccCCCCch
Q 046325 196 LAQALRSSSKLIVSNDGKKVRRKHPFTDK 224 (442)
Q Consensus 196 I~~AL~~S~~LeVseDg~kVRRk~Pl~e~ 224 (442)
|..|...++-+.|++.. -|+|..|++..
T Consensus 182 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (950)
T 3htx_A 182 VMKAAAKLADYIVASPH-GLRRKNAYPSE 209 (950)
T ss_dssp HHHHHHHCCSSEEEETT-EEEESSCCCHH
T ss_pred HHHHhhcCCCcEEeCCc-ccccCCCCCHH
Confidence 66777766655677776 99999999853
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=88.25 E-value=0.19 Score=43.36 Aligned_cols=36 Identities=19% Similarity=0.004 Sum_probs=30.8
Q ss_pred cccEEEEEeCCHHHHHHHHHHh-cCCcCCCCceEEEEe
Q 046325 282 NKLHALVEYESTDIAEKAVEKL-NDERNWRKGLRVRVL 318 (442)
Q Consensus 282 ~KG~AFVEFes~edA~kAv~~L-n~~~~~~~glrV~l~ 318 (442)
.+|+++|||.+.++|++|++.| |+..+.+ .++|..+
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a 48 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDA 48 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETT
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccc
Confidence 3689999999999999999999 9888887 6666644
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=88.15 E-value=0.57 Score=38.97 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=48.7
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCCcC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDERN 308 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~~~ 308 (442)
+-.|+|+.||+..|++++.+.++.+=.+.....+....+ .+...+ .-|||.|.+.|+.....+.+++..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s----~~~~~~----SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLS----LYPHLY----SRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSS----SCCSCC----CCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccC----CCCCcc----eEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 456999999999999999888877655443333221111 111111 3689999999999999999998654
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.39 E-value=2.4 Score=44.60 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=44.7
Q ss_pred ceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 232 CTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 232 rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
..++|+ ||......+|.++|+.||.| .|+.+. ..+|||.|.+.+.|..++..++..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-----------------dt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-----------------DTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-----------------SSEEEEECSCHHHHHHHHHHHTTC
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-----------------CCeEEEEECCHHHHHHHHHHHHhC
Confidence 455554 99999999999999999965 444332 248999999999999999999754
No 224
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=81.44 E-value=1.3 Score=38.73 Aligned_cols=79 Identities=13% Similarity=0.133 Sum_probs=48.4
Q ss_pred cceEEcccCCCCCCHHHHHHHHhcCCCeEE-EEEeCCCC--CCC-CCcccccccCcccEEEEEeCCHHHHHHHHHHhcCC
Q 046325 231 SCTVVAENLPEDHSHQNLEKIFGVVGSVKT-IRICHPPE--SNS-SRAKSDFFVSNKLHALVEYESTDIAEKAVEKLNDE 306 (442)
Q Consensus 231 ~rTVyV~nLp~d~T~e~LkelFs~~G~V~~-Vri~r~~~--~~~-sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~Ln~~ 306 (442)
...|.|=++|++. ...|-+.|++||.|.. +.+.++.. ... ...+.....+...+..|.|++..+|.+|| ..|+.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 4568888997654 5677889999999855 22221100 000 00011111123568899999999999999 67887
Q ss_pred cCCCC
Q 046325 307 RNWRK 311 (442)
Q Consensus 307 ~~~~~ 311 (442)
.+.+.
T Consensus 85 ii~G~ 89 (132)
T 3p3d_A 85 VFNGV 89 (132)
T ss_dssp EETTE
T ss_pred EeCcE
Confidence 77653
No 225
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=80.53 E-value=0.33 Score=41.56 Aligned_cols=10 Identities=0% Similarity=-0.227 Sum_probs=5.8
Q ss_pred cEEEEEeCCH
Q 046325 284 LHALVEYEST 293 (442)
Q Consensus 284 G~AFVEFes~ 293 (442)
...||...+.
T Consensus 64 nI~~I~~pd~ 73 (119)
T 1b34_A 64 NIRYFILPDS 73 (119)
T ss_dssp GEEEEECCTT
T ss_pred eEEEEEeccc
Confidence 3566666654
No 226
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=78.52 E-value=0.42 Score=40.92 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=3.1
Q ss_pred CCeEEEEE
Q 046325 256 GSVKTIRI 263 (442)
Q Consensus 256 G~V~~Vri 263 (442)
|....|.+
T Consensus 12 gk~V~V~L 19 (119)
T 1b34_A 12 HETVTIEL 19 (119)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 33344433
No 227
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=78.44 E-value=0.88 Score=28.74 Aligned_cols=14 Identities=50% Similarity=0.759 Sum_probs=12.0
Q ss_pred CCCCCCCCCCcCCC
Q 046325 67 PFKFNVQAPEFVPR 80 (442)
Q Consensus 67 ~~~~n~~apefvpr 80 (442)
-|+|-+.||||+|.
T Consensus 3 ~S~LS~~ApeF~Ps 16 (26)
T 1jh4_B 3 MSKLSVNAPEFYPS 16 (26)
T ss_dssp CCCSSCCCSCCCCT
T ss_pred ccccCcCCceeccC
Confidence 37899999999994
No 228
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=60.30 E-value=2.8 Score=34.38 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred ccceEEcccCCCCCCHHH
Q 046325 230 QSCTVVAENLPEDHSHQN 247 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~ 247 (442)
...+|||+|||+++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 456799999999998764
No 229
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=48.61 E-value=9 Score=23.80 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=11.9
Q ss_pred CCCCCCCCCCcCCC
Q 046325 67 PFKFNVQAPEFVPR 80 (442)
Q Consensus 67 ~~~~n~~apefvpr 80 (442)
-|-||+-|-||||-
T Consensus 3 ks~lnp~akef~pg 16 (26)
T 1jgn_B 3 KSNLNPNAKEFVPG 16 (26)
T ss_dssp CCSSCTTCCCCCTT
T ss_pred cccCCcchhhcCCC
Confidence 46799999999994
No 230
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=40.69 E-value=12 Score=23.98 Aligned_cols=15 Identities=20% Similarity=-0.024 Sum_probs=11.3
Q ss_pred CCCCCCCCccccccc
Q 046325 415 FKGPRMPDVTQIMAL 429 (442)
Q Consensus 415 ~~gpRmPdgtrgf~~ 429 (442)
|||||...|.-||--
T Consensus 5 ppgprgqpgvmgfpg 19 (31)
T 4gyx_A 5 PPGPRGQPGVMGFPG 19 (31)
T ss_dssp CCCCCCCCCCCCCCC
T ss_pred CCCCCCCCccccCCC
Confidence 678888888877753
No 231
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=38.47 E-value=16 Score=33.45 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=33.6
Q ss_pred cCCCCCceecccccchhHHH--hhccChHHHHHHhhcCCc--eEEecCCccccccC
Q 046325 168 NKDPEGFVPLSVIGSMKKIK--SLVGNNHLLAQALRSSSK--LIVSNDGKKVRRKH 219 (442)
Q Consensus 168 ~~d~eG~Vpi~~i~sF~kmK--~Lt~d~~~I~~AL~~S~~--LeVseDg~kVRRk~ 219 (442)
.-|++|||+|..++. -+.+ -...+.+.|.+++..+.+ .+++.+ .||-.+
T Consensus 23 ~ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~~--~IRA~q 75 (186)
T 1wfx_A 23 RLTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRNG--EIRARY 75 (186)
T ss_dssp CCCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEETT--EEEESS
T ss_pred ccCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeecc--EEEecc
Confidence 348899999999998 3333 233467888888876654 667643 777654
No 232
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=25.07 E-value=1.6e+02 Score=20.96 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=42.6
Q ss_pred ccceEEcccCCCCCCHHHHHHHHhcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHHHHHHHHHH
Q 046325 230 QSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVEK 302 (442)
Q Consensus 230 ~~rTVyV~nLp~d~T~e~LkelFs~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~edA~kAv~~ 302 (442)
...++.|.++.-......|++.+.. -.|..+.+-.. .+.+.|+|.+.++..++|+.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~----------------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN----------------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS----------------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc----------------CCEEEEEECCHHHHHHHHHH
Confidence 3457889999988899999999999 88988887321 24678899866666666653
No 233
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.37 E-value=1.9e+02 Score=26.05 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=35.2
Q ss_pred ceEEcccCCCC---------CCHHHHHHHH--hcCCCeEEEEEeCCCCCCCCCcccccccCcccEEEEEeCCHH
Q 046325 232 CTVVAENLPED---------HSHQNLEKIF--GVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTD 294 (442)
Q Consensus 232 rTVyV~nLp~d---------~T~e~LkelF--s~~G~V~~Vri~r~~~~~~sr~Kg~~~~~~KG~AFVEFes~e 294 (442)
-+++|-|+|.. .+-.+|++.| +.|..++..-+.-+. +..|+|.|+|.+.-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~-------------Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYL-------------GHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSS-------------BEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCC-------------CCceeEEEEecCCh
Confidence 47888888862 3457999977 999988755443321 23579999999743
Done!