BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046326
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/463 (43%), Positives = 280/463 (60%), Gaps = 24/463 (5%)
Query: 4 ESLQPHVAVLPSPGLGHLIPLLEFAKRLVLNHGVHVSFLVITTNEASAAKNNLLRSXXXX 63
ES PHVA++PSPG+GHLIPL+EFAKRLV HG+ V+F++ S A+ +L S
Sbjct: 3 ESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSS 62
Query: 64 XXXXXXXXXXXSAVTSDDMPVVTRLHAIXXXXXXXXXXXXXXXXCN-------PNALVID 116
V D+ TR+ + + P ALV+D
Sbjct: 63 ISSVFL-----PPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVD 117
Query: 117 LFCTQAFEICSQLSIPTYSFVTTSVHFFAFITYLPTLDHEVQGEFVDLPEPIKIPGCPPV 176
LF T AF++ + +P Y F T+ + +F +LP LD V EF +L EP+ +PGC PV
Sbjct: 118 LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPV 177
Query: 177 RPEDLLDQVRNRKIDEYKFFLLHVSRLPLAAGIFLNSWENLEFVPLKAIGEHSFYLQIPT 236
+D LD ++RK D YK+ L + R A GI +N++ LE +KA+ E +
Sbjct: 178 AGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPG----LDK 233
Query: 237 PPINPIGPL--IKQDEPLSASDEECLAWLDKQPPDSVLFAVPGSGGTLTAEQVTEMAWGL 294
PP+ P+GPL I + E + ECL WLD QP SVL+ GSGGTLT EQ+ E+A GL
Sbjct: 234 PPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGL 293
Query: 295 EQSKQRFIWVVRMPSDASASATFFNVGSDVNDPKAYLPEGFLQRTRAQGAGMVVPSWAPQ 354
S+QRF+WV+R PS A++++F+ S DP +LP GFL+RT+ +G V+P WAPQ
Sbjct: 294 ADSEQRFLWVIRSPS-GIANSSYFDSHSQ-TDPLTFLPPGFLERTKKRG--FVIPFWAPQ 349
Query: 355 VHILRHPSTGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNAAMLTAEETGVAVKPET 414
+L HPSTGGFL+HCGWNSTLES+ G+P+IAWPLYAEQ+MNA +L+ E+ A++P
Sbjct: 350 AQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLS-EDIRAALRPRA 408
Query: 415 EPGKKVIGREEIERVVRLVMEGEEGKVMRRRVQELKESASREL 457
++ REE+ RVV+ +MEGEEGK +R +++ELKE+A R L
Sbjct: 409 G-DDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVL 450
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 191 bits (485), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 49/456 (10%)
Query: 13 LPSPGLGHLIPLLEFAKRLVLNHGVHVSFLVITTNE-----ASAAKNNLLRSXXXXXXXX 67
+P+PG+GHL LEFAK L+ NH ++ V A + ++L S
Sbjct: 15 IPAPGIGHLASALEFAK-LLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLID 73
Query: 68 XXXXXX--XSAVTSDDMPVVTRLHAIXXXXXXXXXXXXXXXXCNPNALVIDLFCTQAFEI 125
+ S + ++T L ++ LV+D FC ++
Sbjct: 74 LPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVV---GLVLDFFCVSMIDV 130
Query: 126 CSQLSIPTYSFVTTSVHFFAFITYLPTLDHEVQGEFVDLP---EPIKIPGCPPVRPEDLL 182
++ IP+Y F+T++V F + + L + +++ F D + + IPG P ++L
Sbjct: 131 GNEFGIPSYLFLTSNVGFLSLMLSLK--NRQIEEVFDDSDRDHQLLNIPGISNQVPSNVL 188
Query: 183 DQVRNRKIDEYKFFLLHVSRLPLAAGIFLNSWENLEFVPLKAIGEHSFYLQIPTPPINPI 242
K Y + R GI +N++ +LE + A+ +H + PPI +
Sbjct: 189 PDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKI----PPIYAV 244
Query: 243 GPLIK---QDEPL--SASDEECLAWLDKQPPDSVLFAVPGSGG-TLTAEQVTEMAWGLEQ 296
GPL+ Q P A + L WLD+QP SV+F GS G + Q+ E+A GL+
Sbjct: 245 GPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKH 304
Query: 297 SKQRFIWVVRMPSDASASATFFNVGSDVNDPKAYLPEGFLQRTRAQGAGMVVPSWAPQVH 356
S RF+W S SA K PEGFL+ +G GM+ WAPQV
Sbjct: 305 SGVRFLW--------SNSAE-----------KKVFPEGFLEWMELEGKGMIC-GWAPQVE 344
Query: 357 ILRHPSTGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNAAMLTAE-ETGVAVKPETE 415
+L H + GGF+SHCGWNS LES+ GVP++ WP+YAEQ++NA L E G+ ++ +
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404
Query: 416 PGKKVIGREEIERVVRLVMEGEEGKVMRRRVQELKE 451
G V+ EEIE+ ++ +M+ + ++ ++VQE+KE
Sbjct: 405 KGSDVVAAEEIEKGLKDLMDKD--SIVHKKVQEMKE 438
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 191 bits (485), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 49/456 (10%)
Query: 13 LPSPGLGHLIPLLEFAKRLVLNHGVHVSFLVITTNE-----ASAAKNNLLRSXXXXXXXX 67
+P+PG+GHL LEFAK L+ NH ++ V A + ++L S
Sbjct: 15 IPAPGIGHLASALEFAK-LLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLID 73
Query: 68 XXXXXX--XSAVTSDDMPVVTRLHAIXXXXXXXXXXXXXXXXCNPNALVIDLFCTQAFEI 125
+ S + ++T L ++ LV+D FC ++
Sbjct: 74 LPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVV---GLVLDFFCVSMIDV 130
Query: 126 CSQLSIPTYSFVTTSVHFFAFITYLPTLDHEVQGEFVDLP---EPIKIPGCPPVRPEDLL 182
++ IP+Y F+T++V F + + L + +++ F D + + IPG P ++L
Sbjct: 131 GNEFGIPSYLFLTSNVGFLSLMLSLK--NRQIEEVFDDSDRDHQLLNIPGISNQVPSNVL 188
Query: 183 DQVRNRKIDEYKFFLLHVSRLPLAAGIFLNSWENLEFVPLKAIGEHSFYLQIPTPPINPI 242
K Y + R GI +N++ +LE + A+ +H + PPI +
Sbjct: 189 PDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKI----PPIYAV 244
Query: 243 GPLIK---QDEPL--SASDEECLAWLDKQPPDSVLFAVPGSGG-TLTAEQVTEMAWGLEQ 296
GPL+ Q P A + L WLD+QP SV+F GS G + Q+ E+A GL+
Sbjct: 245 GPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKH 304
Query: 297 SKQRFIWVVRMPSDASASATFFNVGSDVNDPKAYLPEGFLQRTRAQGAGMVVPSWAPQVH 356
S RF+W S SA K PEGFL+ +G GM+ WAPQV
Sbjct: 305 SGVRFLW--------SNSAE-----------KKVFPEGFLEWMELEGKGMIC-GWAPQVE 344
Query: 357 ILRHPSTGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNAAMLTAE-ETGVAVKPETE 415
+L H + GGF+SHCGWNS LES+ GVP++ WP+YAEQ++NA L E G+ ++ +
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404
Query: 416 PGKKVIGREEIERVVRLVMEGEEGKVMRRRVQELKE 451
G V+ EEIE+ ++ +M+ + ++ ++VQE+KE
Sbjct: 405 KGSDVVAAEEIEKGLKDLMDKD--SIVHKKVQEMKE 438
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/481 (27%), Positives = 206/481 (42%), Gaps = 66/481 (13%)
Query: 7 QPHVAVLPSPGLGHLIPLLEFAKRLVLNHGVHVSFLVITTNEASAAKN------NLLRSX 60
+PHV ++P P GH+ PL + AK L L G H++F+ N K+ +
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAKLLHL-RGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 61 XXXXXXXXXXXXXXSAVTSDDMPVV---TRLHAIXXXXXXXXXXXXXXXXCNPNALVIDL 117
S D+P + R + + LV D
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 126
Query: 118 FCTQAFEICSQLSIPTYSFVTTS-------VHFFAFIT--YLPTLDHEVQGEFVDLPEPI 168
+ + + +P + ++S +HF +F+ +P D +
Sbjct: 127 CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVD 186
Query: 169 KIPGCPPVRPEDLLDQVRNRKIDE--YKFFLLHVSRLPLAAGIFLNSWENLEFVPLKAIG 226
IPG R +D++D +R ++ +FF+ R+ I LN++ LE + A
Sbjct: 187 WIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINA-- 244
Query: 227 EHSFYLQIPTPPINPIGPL---IKQ----------DEPLSASDEECLAWLDKQPPDSVLF 273
L P I PIGPL +KQ D L D ECL WL+ + P SV++
Sbjct: 245 -----LSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVY 299
Query: 274 AVPGSGGTLTAEQVTEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPKAYLPE 333
GS +T EQ+ E AWGL K+ F+W++R S F
Sbjct: 300 VNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIF--------------SS 345
Query: 334 GFLQRTRAQGAGMVVPSWAPQVHILRHPSTGGFLSHCGWNSTLESICHGVPMIAWPLYAE 393
F +G ++ SW PQ +L HPS GGFL+HCGWNST ESIC GVPM+ WP +A+
Sbjct: 346 EFTNEIADRG---LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFAD 402
Query: 394 QRMNAAMLTAE-ETGVAVKPETEPGKKVIGREEIERVVRLVMEGEEGKVMRRRVQELKES 452
Q + + E E G+ + + REE+ +++ V+ G++GK M+++ ELK+
Sbjct: 403 QPTDCRFICNEWEIGMEIDTN-------VKREELAKLINEVIAGDKGKKMKQKAMELKKK 455
Query: 453 A 453
A
Sbjct: 456 A 456
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 151/308 (49%), Gaps = 41/308 (13%)
Query: 170 IPGCPPVRPEDLLDQVRNRKIDEYKFFLLHVS--RLPLAAGIFLNSWENLEFVPLKAIGE 227
+PG P ++ DL + V + ID +LH LP A + +NS+ + PL
Sbjct: 179 LPGFPELKASDLPEGVI-KDIDVPFATMLHKMGLELPRANAVAINSFATIH--PLIENEL 235
Query: 228 HS-FYLQIPTPPINPIGPLIKQDEPLSASDEE-CLAWLDKQPPDSVLFAVPGSGGTLTAE 285
+S F L + P N P K SDE CL WLD+ SV++ GS T
Sbjct: 236 NSKFKLLLNVGPFNLTTPQRK------VSDEHGCLEWLDQHENSSVVYISFGSVVTPPPH 289
Query: 286 QVTEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPKAYLPEGFLQRTRAQGAG 345
++T +A LE+ FIW R DPK LP+GFL+RT+ +G
Sbjct: 290 ELTALAESLEECGFPFIWSFR------------------GDPKEKLPKGFLERTKTKGK- 330
Query: 346 MVVPSWAPQVHILRHPSTGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNAAML-TAE 404
+ +WAPQV IL+H S G FL+H GWNS LE I GVPMI+ P + +Q +N + +
Sbjct: 331 --IVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVL 388
Query: 405 ETGVAVKPETEPGKKVIGREEIERVVRLVMEGEEGKVMRRRVQELKESASRELXXXXXXX 464
E GV V V+ +E I++ + L M E+G +MR+++ +LKESA + +
Sbjct: 389 EIGVGVD------NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSA 442
Query: 465 XXLASFIK 472
+ I+
Sbjct: 443 MDFTTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 168/356 (47%), Gaps = 45/356 (12%)
Query: 111 NALVIDLFCTQAFEICSQLSIPTYSFVTTSVHFFAFITYLPTLDHEV-----QGEFVDLP 165
+ LV D F A ++ +++ + F T + + Y+ + ++ QG +L
Sbjct: 114 SCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELL 173
Query: 166 EPIKIPGCPPVRPEDLLDQVRNRKIDEYKFFLLHV--SRLPLAAGIFLNSWENLEFVPLK 223
IPG VR DL + + ++ +LH LP A +F+NS+E L+
Sbjct: 174 N--FIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTN 231
Query: 224 AIGEH-SFYLQIPTPPINPIGPLIKQDEPLSASDEECLAWLDKQPPDSVLFAVPGSGGTL 282
+ YL I P N I P P+ + CL WL ++ P SV++ G+ T
Sbjct: 232 DLKSKLKTYLNIG--PFNLITP-----PPVVPNTTGCLQWLKERKPTSVVYISFGTVTTP 284
Query: 283 TAEQVTEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPKAYLPEGFLQRTRAQ 342
+V ++ LE S+ FIW +R + + +LPEGFL++TR
Sbjct: 285 PPAEVVALSEALEASRVPFIWSLR------------------DKARVHLPEGFLEKTR-- 324
Query: 343 GAGMVVPSWAPQVHILRHPSTGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNAAML- 401
G GMVVP WAPQ +L H + G F++HCGWNS ES+ GVP+I P + +QR+N M+
Sbjct: 325 GYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVE 383
Query: 402 TAEETGVAVKPETEPGKKVIGREEIERVVRLVMEGEEGKVMRRRVQELKESASREL 457
E GV ++ V + + ++ E+GK +R ++ L+E+A R +
Sbjct: 384 DVLEIGVRIE------GGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAV 433
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 351 WAPQVHILRHPSTGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNAAMLTAEETGVAV 410
W PQ +L HP T F++H G N E+I HG+P + PL+A+Q N A A V V
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRV 134
Query: 411 KPETEPGKKVIGREEIERVV 430
T ++ ++RV+
Sbjct: 135 DFNTXSSTDLL--NALKRVI 152
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 348 VPSWAPQVHILRHPSTGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNA 398
V W PQ+ IL S F++H G ST+E++ + VPM+A P AEQ MNA
Sbjct: 309 VHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 348 VPSWAPQVHILRHPSTGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNAAMLTAEETG 407
V W PQ+ ILR F++H G + E + PMIA P +Q NA ML + G
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML--QGLG 342
Query: 408 VAVKPETEPGKKVIGREEIERVVRLVMEGEEGKVMRRRVQEL-KESASR 455
VA K TE + RE + LV + E + +RR E+ +E +R
Sbjct: 343 VARKLATEEATADLLRET---ALALVDDPEVARRLRRIQAEMAQEGGTR 388
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 363 TGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNAAMLTAEETGVAVKPETE 415
GG + G ++ LE C G+P+I P + L E G VK ETE
Sbjct: 283 VGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETE 335
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 350 SWAPQVHILRHPSTGGFLSHCGWNSTLESICHGVPMIAWP 389
SW PQ +L H + H G +TL ++ GVP +++P
Sbjct: 298 SWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFP 335
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 361 PSTGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNAAMLTAEETGVAV 410
P+ + H G +TL + GVP ++ P+ AE +A +L A GV V
Sbjct: 298 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEV 347
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 361 PSTGGFLSHCGWNSTLESICHGVPMIAWPLYAEQRMNAAMLTAEETGVAV 410
P+ + H G +TL + GVP ++ P+ AE +A +L A GV V
Sbjct: 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEV 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,947,858
Number of Sequences: 62578
Number of extensions: 523091
Number of successful extensions: 1302
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 23
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)