BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046331
         (249 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
           Endoprotease From Cucumis Melo L
 pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
           Endoprotease From Cucumis Melo L
          Length = 621

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 23/106 (21%)

Query: 155 SHTSSTAAG---------------KRGKDVSFSRTGKKK-------QISEMLLMMHDATT 192
           +HT+STAAG                RG  V  +R    K         +++L    DA  
Sbjct: 96  THTASTAAGGLVSQANLYGLGLGTARGG-VPLARIAAYKVCWNDGCSDTDILAAYDDAIA 154

Query: 193 VGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSAGNRGP 238
            GVD+I++S+G A+  ++  ++I+IGSFHA++ GILTSNSAGN GP
Sbjct: 155 DGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGP 200


>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3
 pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3
 pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3 In Complex With A Chloromethylketone Inhibitor
 pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3 In Complex With A Chloromethylketone Inhibitor
          Length = 649

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 181 SEMLLMMHDATTVGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSAGNRGPRT 240
           S+++  M  A   GVD+I+IS G+   +   +++ISI SF AM  G+L S SAGNRGP  
Sbjct: 152 SDLIAAMDQAVADGVDMISISYGY-RFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGI 210

Query: 241 DQL 243
             L
Sbjct: 211 GSL 213


>pdb|1WRM|A Chain A, Crystal Structure Of Jsp-1
          Length = 165

 Score = 28.1 bits (61), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 102 RHQVKQFQEWFKETFGE 118
           +H+V Q+++W KE +GE
Sbjct: 142 KHEVHQYRQWLKEEYGE 158


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,305,517
Number of Sequences: 62578
Number of extensions: 270810
Number of successful extensions: 581
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 10
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)