Query 046331
Match_columns 249
No_of_seqs 292 out of 1613
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:59:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.4E-29 3E-34 229.8 12.8 183 17-243 2-221 (307)
2 cd07478 Peptidases_S8_CspA-lik 99.9 1E-23 2.2E-28 201.8 10.4 163 29-239 1-196 (455)
3 PTZ00262 subtilisin-like prote 99.9 3E-23 6.4E-28 202.8 12.5 90 145-239 373-476 (639)
4 cd07479 Peptidases_S8_SKI-1_li 99.9 7.1E-23 1.5E-27 182.0 11.4 91 146-243 41-145 (255)
5 cd07483 Peptidases_S8_Subtilis 99.9 2E-22 4.3E-27 182.2 12.5 93 144-239 79-184 (291)
6 cd07475 Peptidases_S8_C5a_Pept 99.9 3.7E-22 8E-27 183.4 10.6 170 23-241 2-191 (346)
7 cd07476 Peptidases_S8_thiazoli 99.9 4.3E-21 9.2E-26 171.9 12.6 91 146-239 46-151 (267)
8 cd04857 Peptidases_S8_Tripepti 99.9 7.9E-21 1.7E-25 179.2 14.0 97 146-243 181-293 (412)
9 cd05562 Peptidases_S53_like Pe 99.8 5.3E-21 1.1E-25 172.1 11.0 84 146-240 44-137 (275)
10 cd07497 Peptidases_S8_14 Pepti 99.8 5.8E-21 1.3E-25 174.6 11.3 99 145-244 51-186 (311)
11 cd07485 Peptidases_S8_Fervidol 99.8 1.5E-20 3.2E-25 167.9 13.3 93 146-241 57-177 (273)
12 cd07480 Peptidases_S8_12 Pepti 99.8 1.6E-20 3.5E-25 169.8 12.4 95 146-242 42-174 (297)
13 cd07487 Peptidases_S8_1 Peptid 99.8 1.6E-20 3.6E-25 165.4 12.1 97 145-242 39-154 (264)
14 cd07473 Peptidases_S8_Subtilis 99.8 1.9E-20 4.2E-25 165.1 12.4 90 145-239 58-161 (259)
15 cd07496 Peptidases_S8_13 Pepti 99.8 3.5E-20 7.5E-25 166.5 13.3 92 145-240 66-180 (285)
16 cd07489 Peptidases_S8_5 Peptid 99.8 3.7E-20 8E-25 168.3 13.1 91 145-239 63-167 (312)
17 cd07491 Peptidases_S8_7 Peptid 99.8 3.1E-20 6.7E-25 164.6 11.6 93 147-241 46-151 (247)
18 cd07498 Peptidases_S8_15 Pepti 99.8 7.1E-20 1.5E-24 160.1 12.4 95 146-241 36-145 (242)
19 cd05561 Peptidases_S8_4 Peptid 99.8 5.5E-20 1.2E-24 161.9 11.5 86 146-240 32-134 (239)
20 cd07474 Peptidases_S8_subtilis 99.8 6.6E-20 1.4E-24 164.5 12.1 95 145-242 57-165 (295)
21 cd07494 Peptidases_S8_10 Pepti 99.8 6.6E-20 1.4E-24 166.6 12.0 136 14-239 4-158 (298)
22 cd07481 Peptidases_S8_Bacillop 99.8 1.2E-19 2.7E-24 161.3 12.6 93 145-242 47-164 (264)
23 cd07484 Peptidases_S8_Thermita 99.8 1.2E-19 2.5E-24 160.5 11.3 90 146-240 64-167 (260)
24 cd07493 Peptidases_S8_9 Peptid 99.8 1.6E-19 3.5E-24 160.1 11.6 90 147-239 44-160 (261)
25 cd07482 Peptidases_S8_Lantibio 99.8 4.1E-19 9E-24 158.9 12.5 91 145-240 48-159 (294)
26 cd04842 Peptidases_S8_Kp43_pro 99.8 4.3E-19 9.3E-24 158.9 11.8 90 148-241 52-162 (293)
27 cd07490 Peptidases_S8_6 Peptid 99.8 5.8E-19 1.3E-23 155.2 12.1 89 146-239 39-141 (254)
28 cd04843 Peptidases_S8_11 Pepti 99.8 9.2E-19 2E-23 157.7 10.0 135 21-240 5-156 (277)
29 cd07477 Peptidases_S8_Subtilis 99.8 2.4E-18 5.2E-23 148.7 11.9 92 145-242 35-140 (229)
30 cd04848 Peptidases_S8_Autotran 99.8 3.5E-18 7.7E-23 149.7 12.4 95 146-242 42-162 (267)
31 cd07492 Peptidases_S8_8 Peptid 99.8 4.1E-18 8.9E-23 147.4 11.4 93 145-241 39-136 (222)
32 cd04077 Peptidases_S8_PCSK9_Pr 99.8 3.3E-18 7.1E-23 151.0 10.6 83 146-240 59-160 (255)
33 cd04059 Peptidases_S8_Protein_ 99.7 3.4E-18 7.3E-23 153.8 8.9 89 148-238 82-190 (297)
34 cd04847 Peptidases_S8_Subtilis 99.7 1.3E-17 2.8E-22 150.2 10.1 96 146-242 34-152 (291)
35 PF00082 Peptidase_S8: Subtila 99.7 5.5E-17 1.2E-21 143.9 6.9 96 145-241 41-153 (282)
36 KOG1153 Subtilisin-related pro 99.6 1.2E-15 2.5E-20 142.5 9.9 82 146-239 253-357 (501)
37 cd00306 Peptidases_S8_S53 Pept 99.6 2.3E-14 5.1E-19 122.1 12.1 93 145-241 39-147 (241)
38 KOG1114 Tripeptidyl peptidase 99.6 4.4E-15 9.6E-20 148.0 8.3 96 148-244 308-419 (1304)
39 KOG4266 Subtilisin kexin isozy 99.5 3E-14 6.4E-19 137.3 9.4 143 12-244 182-338 (1033)
40 cd07488 Peptidases_S8_2 Peptid 99.5 2E-14 4.2E-19 127.7 5.7 87 146-240 33-137 (247)
41 COG1404 AprE Subtilisin-like s 99.2 6.4E-11 1.4E-15 110.8 12.3 93 146-240 179-290 (508)
42 cd04056 Peptidases_S53 Peptida 98.5 2.7E-07 5.9E-12 86.1 6.9 71 171-241 83-168 (361)
43 PF13087 AAA_12: AAA domain; P 97.6 2.5E-05 5.4E-10 65.8 1.8 65 69-133 87-157 (200)
44 KOG1803 DNA helicase [Replicat 97.3 0.00014 3.1E-09 71.4 3.0 63 68-134 501-565 (649)
45 KOG1805 DNA replication helica 97.1 0.00028 6.1E-09 72.4 2.6 59 70-134 952-1012(1100)
46 KOG3526 Subtilisin-like propro 96.8 0.0045 9.8E-08 58.1 7.7 89 150-239 208-316 (629)
47 KOG1801 tRNA-splicing endonucl 96.2 0.0063 1.4E-07 62.9 5.4 74 60-133 663-745 (827)
48 TIGR00376 DNA helicase, putati 96.0 0.0081 1.8E-07 60.4 4.6 61 69-133 505-567 (637)
49 KOG1802 RNA helicase nonsense 95.8 0.0072 1.6E-07 60.5 3.2 61 70-134 705-774 (935)
50 COG1112 Superfamily I DNA and 94.2 0.045 9.7E-07 55.3 3.8 59 70-132 624-684 (767)
51 KOG1807 Helicases [Replication 93.2 0.096 2.1E-06 53.4 4.1 60 70-133 850-912 (1025)
52 KOG1804 RNA helicase [RNA proc 84.0 0.89 1.9E-05 46.8 3.1 64 70-135 587-652 (775)
53 KOG1114 Tripeptidyl peptidase 54.2 14 0.0003 39.2 3.6 39 8-52 62-100 (1304)
54 COG1879 RbsB ABC-type sugar tr 49.2 39 0.00085 30.2 5.5 46 182-234 79-124 (322)
55 PF08076 TetM_leader: Tetracyc 36.6 12 0.00025 22.0 0.0 12 20-31 16-27 (28)
56 PF02601 Exonuc_VII_L: Exonucl 30.3 1.1E+02 0.0024 27.7 5.4 54 181-237 58-118 (319)
57 cd07018 S49_SppA_67K_type Sign 30.0 1.6E+02 0.0035 25.3 6.1 56 179-234 30-86 (222)
58 PF10649 DUF2478: Protein of u 28.9 1.2E+02 0.0025 25.4 4.8 51 181-234 80-131 (159)
59 PRK10949 protease 4; Provision 28.8 1.6E+02 0.0034 29.9 6.5 57 181-237 350-407 (618)
60 PF13407 Peripla_BP_4: Peripla 24.0 1.8E+02 0.0039 24.5 5.3 44 181-231 42-85 (257)
61 cd07576 R-amidase_like Pseudom 23.3 3.8E+02 0.0083 22.8 7.3 44 188-233 152-195 (254)
62 cd07581 nitrilase_3 Uncharacte 23.3 3.1E+02 0.0067 23.4 6.7 46 188-233 157-202 (255)
63 COG0826 Collagenase and relate 23.2 2.6E+02 0.0055 26.3 6.5 44 184-227 16-63 (347)
64 PRK15408 autoinducer 2-binding 22.9 2.2E+02 0.0047 26.1 5.9 43 183-232 69-111 (336)
65 PRK10481 hypothetical protein; 22.8 72 0.0016 28.1 2.6 24 90-113 127-150 (224)
66 TIGR01303 IMP_DH_rel_1 IMP deh 21.4 3E+02 0.0066 26.9 6.8 53 184-236 277-338 (475)
67 cd07948 DRE_TIM_HCS Saccharomy 21.4 2.2E+02 0.0048 25.4 5.5 51 184-234 74-133 (262)
68 cd07572 nit Nit1, Nit 2, and r 20.5 5.1E+02 0.011 22.1 7.6 46 187-233 162-207 (265)
69 TIGR00520 asnASE_II L-asparagi 20.2 2.4E+02 0.0051 26.5 5.6 43 187-233 255-298 (349)
70 COG1748 LYS9 Saccharopine dehy 20.1 1.7E+02 0.0037 28.0 4.6 44 184-235 82-125 (389)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=1.4e-29 Score=229.79 Aligned_cols=183 Identities=28% Similarity=0.372 Sum_probs=134.7
Q ss_pred hhcccccCccccc-------------cccceEEEEecCCCCCCCCCCccCCCCC--CCCCCCCCCCCCCCcchhHHHHHH
Q 046331 17 FCKITLSWDYFRL-------------VKESCVYGRLALSGGTCNSCSFGNRMQD--ADLWPNRCLPPNPPLEVEFVLFHK 81 (249)
Q Consensus 17 ~~~tt~sw~~l~l-------------~g~gviigvi~dtGi~~~~~sf~~~~~~--~~~w~g~c~~~~n~~ea~~~~~~k 81 (249)
+|||||+|+|+|+ .|+|++|+|| ||||+++||.|.+.... +..|++.|..+....- ..+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaVi-DtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~k 78 (307)
T cd04852 2 QLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVL-DTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNP--FSCNNK 78 (307)
T ss_pred CccccCCHHHcCCCCCCCcccccccCCCCccEEEEE-eCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCc--cCcCCe
Confidence 3789999998886 3899999999 99999999999987433 7889999988653211 112445
Q ss_pred hhhcCcccccCCcceeecchhHHHHHHHHHHHHhcCCceeccccCcccccccccCCCCCCCCCCccccCCCcccchhhcc
Q 046331 82 LASMYPELMSSSQLAFISPYRHQVKQFQEWFKETFGELVDMTTTDGCQIIRAWCHPSSEAGNYTAREIEGSQMSHTSSTA 161 (249)
Q Consensus 82 Li~~~~~~~~~~~igvItPy~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~~~~~~~~~~~~~~~~D~~GH~GThvA~i~ 161 (249)
+++.+... ++...... ...+.+..++.|..|| |||||||+
T Consensus 79 i~g~~~~~------------------------------------~~~~~~~~---~~~~~~~~~~~d~~gH-GT~VAgii 118 (307)
T cd04852 79 LIGARYFS------------------------------------DGYDAYGG---FNSDGEYRSPRDYDGH-GTHTASTA 118 (307)
T ss_pred EEEEEEcc------------------------------------cchhhccC---cccccCCCCCccCCCC-chhhhhhh
Confidence 44422100 00000000 0123345678899999 99999999
Q ss_pred ccccCCC--------CCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcchhhHHHHHH
Q 046331 162 AGKRGKD--------VSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALNFSDESISIGS 219 (249)
Q Consensus 162 ag~~~~~--------~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~ 219 (249)
||+...+ ..+.|+||+++| +++++||++|+++|++|||||||.... ..+.+.+..++
T Consensus 119 ag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~ 197 (307)
T cd04852 119 AGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAF 197 (307)
T ss_pred cCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHH
Confidence 9986532 346799999965 789999999999999999999998742 34556777788
Q ss_pred HHHHhCCcEEEEcCCCCCCCCCce
Q 046331 220 FHAMKNGILTSNSAGNRGPRTDQL 243 (249)
Q Consensus 220 ~~a~~~Gi~Vv~aAGN~Gp~~~tv 243 (249)
+.+.++|++||+||||+|+...+.
T Consensus 198 ~~a~~~gilvV~aAGN~g~~~~~~ 221 (307)
T cd04852 198 LHAVEAGIFVAASAGNSGPGASTV 221 (307)
T ss_pred HHHHhCCCEEEEECCCCCCCCCcc
Confidence 889999999999999999765543
No 2
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.90 E-value=1e-23 Score=201.78 Aligned_cols=163 Identities=16% Similarity=0.146 Sum_probs=114.3
Q ss_pred ccccceEEEEecCCCCCCCCCCccCCCCC---CCCCCCCCCCCCCCcchhHHHHHHhhhcCcccccCCcceeecchhHHH
Q 046331 29 LVKESCVYGRLALSGGTCNSCSFGNRMQD---ADLWPNRCLPPNPPLEVEFVLFHKLASMYPELMSSSQLAFISPYRHQV 105 (249)
Q Consensus 29 l~g~gviigvi~dtGi~~~~~sf~~~~~~---~~~w~g~c~~~~n~~ea~~~~~~kLi~~~~~~~~~~~igvItPy~~Qv 105 (249)
|.|+||+|||| ||||++.||+|++.... -.+|++......++...... .+ . +..|+
T Consensus 1 ltG~GV~VaVI-DtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~-------~~---~----------~~~~i 59 (455)
T cd07478 1 LTGKGVLVGII-DTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGG-------GE---Y----------TEEII 59 (455)
T ss_pred CCCCceEEEEE-ECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCc-------eE---E----------eHHHH
Confidence 57999999999 99999999999986443 46898877664332111000 00 0 00111
Q ss_pred HHHHHHHHHhcCCceeccccCcccccccccCCCCCCCCCCccccCCCcccchhhccccccCCCCCcccccCCCcH-----
Q 046331 106 KQFQEWFKETFGELVDMTTTDGCQIIRAWCHPSSEAGNYTAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI----- 180 (249)
Q Consensus 106 ~~l~~~~~~~~G~~vdi~t~DgfqG~~~~~~~~~~~~~~~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri----- 180 (249)
... ... .++.+..+.+|.+|| ||||||||||+...+..+.|+||+++|
T Consensus 60 ---~~~----------------------~~~-~~p~~~~~~~D~~GH-GThvAGIiag~~~~~~~~~GvAp~a~l~~vk~ 112 (455)
T cd07478 60 ---NAA----------------------LAS-DNPYDIVPSRDENGH-GTHVAGIAAGNGDNNPDFKGVAPEAELIVVKL 112 (455)
T ss_pred ---HHH----------------------Hhc-CCccccCcCCCCCCc-hHHHHHHHhcCCCCCCCccccCCCCcEEEEEe
Confidence 000 001 133345567899999 999999999998777889999999944
Q ss_pred -------------------HHHHHHHHHHHHC-----CCcEEEeccCCCCCCcchhhHHHHHHHHHHhC-CcEEEEcCCC
Q 046331 181 -------------------SEMLLMMHDATTV-----GVDLITISIGHAHALNFSDESISIGSFHAMKN-GILTSNSAGN 235 (249)
Q Consensus 181 -------------------~~i~~ai~~Ai~~-----gvdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~-Gi~Vv~aAGN 235 (249)
++|++||+|+++. .+.|||||||+......-.+.++.++..+.++ |++||+||||
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGN 192 (455)
T cd07478 113 KQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGN 192 (455)
T ss_pred ecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCC
Confidence 4899999998764 37899999998643333344556566666655 9999999999
Q ss_pred CCCC
Q 046331 236 RGPR 239 (249)
Q Consensus 236 ~Gp~ 239 (249)
+|..
T Consensus 193 eg~~ 196 (455)
T cd07478 193 EGNT 196 (455)
T ss_pred CCCc
Confidence 9974
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.89 E-value=3e-23 Score=202.76 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=78.4
Q ss_pred CccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcc
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALNF 210 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~ 210 (249)
.|.|.+|| ||||||||||...++.++.|+||+++| ++++.||+||++.|++|||||||+...
T Consensus 373 ~P~D~~GH-GTHVAGIIAA~gnN~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~~--- 448 (639)
T PTZ00262 373 GPMDDNYH-GTHVSGIISAIGNNNIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDEY--- 448 (639)
T ss_pred CCCCCCCc-chHHHHHHhccccCCCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCCc---
Confidence 46899999 999999999987777789999999965 889999999999999999999997632
Q ss_pred hhhHHHHHHHHHHhCCcEEEEcCCCCCCC
Q 046331 211 SDESISIGSFHAMKNGILTSNSAGNRGPR 239 (249)
Q Consensus 211 ~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~ 239 (249)
...+..++.+|.++||+||+||||+|+.
T Consensus 449 -s~~l~~AV~~A~~kGILVVAAAGN~g~~ 476 (639)
T PTZ00262 449 -SGIFNESVKYLEEKGILFVVSASNCSHT 476 (639)
T ss_pred -cHHHHHHHHHHHHCCCEEEEeCCCCCCC
Confidence 2345667788999999999999999864
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.89 E-value=7.1e-23 Score=182.01 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=73.6
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcch
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALNFS 211 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~ 211 (249)
..|..|| |||||||++++. ....|+||+++| ++++++|+||++.++||||||||.... .
T Consensus 41 ~~d~~gH-GT~VAGiIa~~~---~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~~---~ 113 (255)
T cd07479 41 LDDGLGH-GTFVAGVIASSR---EQCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPDF---M 113 (255)
T ss_pred CCCCCCc-HHHHHHHHHccC---CCceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCCC---C
Confidence 4578899 999999999874 246899999955 678999999999999999999997631 2
Q ss_pred hhHHHHHHHHHHhCCcEEEEcCCCCCCCCCce
Q 046331 212 DESISIGSFHAMKNGILTSNSAGNRGPRTDQL 243 (249)
Q Consensus 212 ~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~tv 243 (249)
..++..++.++.++||+||+||||+|+...|+
T Consensus 114 ~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~ 145 (255)
T cd07479 114 DKPFVDKVWELTANNIIMVSAIGNDGPLYGTL 145 (255)
T ss_pred CcHHHHHHHHHHHCCcEEEEEcCCCCCCcccc
Confidence 23344456678899999999999999865553
No 5
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.88 E-value=2e-22 Score=182.24 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCccccCCCcccchhhccccccCCCCCcccccCCCcH-------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcc
Q 046331 144 YTAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI-------------SEMLLMMHDATTVGVDLITISIGHAHALNF 210 (249)
Q Consensus 144 ~~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri-------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~ 210 (249)
..|.|..|| |||||||+++...+...+.|+||++|| +++++||+||++.|++|||||||.....
T Consensus 79 ~~~~~~~gH-GT~VAGiIaa~~~n~~g~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~~~~-- 155 (291)
T cd07483 79 NGPISDADH-GTHVAGIIAAVRDNGIGIDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKSFSP-- 155 (291)
T ss_pred CCCCCCCCc-HHHHHHHHhCcCCCCCceEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCCCCC--
Confidence 346688999 999999999987777778999999965 7799999999999999999999975321
Q ss_pred hhhHHHHHHHHHHhCCcEEEEcCCCCCCC
Q 046331 211 SDESISIGSFHAMKNGILTSNSAGNRGPR 239 (249)
Q Consensus 211 ~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~ 239 (249)
..+.+..++.+|.++|+++|+||||+|..
T Consensus 156 ~~~~~~~ai~~a~~~gilvV~AAGN~g~~ 184 (291)
T cd07483 156 NKEWVDDAIKYAESKGVLIVHAAGNDGLD 184 (291)
T ss_pred ccHHHHHHHHHHHhCCeEEEEeCCCCCCC
Confidence 23445666778899999999999999964
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.87 E-value=3.7e-22 Score=183.41 Aligned_cols=170 Identities=16% Similarity=0.195 Sum_probs=115.7
Q ss_pred cCccccccccceEEEEecCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcchhHHHHHHhhh-cCcccccCCcceeecch
Q 046331 23 SWDYFRLVKESCVYGRLALSGGTCNSCSFGNRMQDADLWPNRCLPPNPPLEVEFVLFHKLAS-MYPELMSSSQLAFISPY 101 (249)
Q Consensus 23 sw~~l~l~g~gviigvi~dtGi~~~~~sf~~~~~~~~~w~g~c~~~~n~~ea~~~~~~kLi~-~~~~~~~~~~igvItPy 101 (249)
-|+-..|.|+|++|+|| ||||++.||.|.........|.+.+.... .... .+..|... +
T Consensus 2 ~w~~~~~~G~gv~VaVi-DtGv~~~hp~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~------- 61 (346)
T cd07475 2 LWDKGGYKGEGMVVAVI-DSGVDPTHDAFRLDDDSKAKYSEEFEAKK-----------KKAGIGYGKYYNE-K------- 61 (346)
T ss_pred hhhhcCCCCCCcEEEEE-eCCCCCCChhHccCCCcccccchhhhhhh-----------hcccCCCCccccc-C-------
Confidence 48888889999999999 99999999999987655554442221100 0000 00000000 0
Q ss_pred hHHHHHHHHHHHHhcCCceeccccCcccccccccCCCCCCCCCCccccCCCcccchhhccccccCC---CCCcccccCCC
Q 046331 102 RHQVKQFQEWFKETFGELVDMTTTDGCQIIRAWCHPSSEAGNYTAREIEGSQMSHTSSTAAGKRGK---DVSFSRTGKKK 178 (249)
Q Consensus 102 ~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~~~~~~~~~~~~~~~~D~~GH~GThvA~i~ag~~~~---~~~~~G~a~~~ 178 (249)
......+.. ...+.....|..+| ||||||||+|.... +..+.|+||++
T Consensus 62 --------------------------~~~~~~~~~--~~~~~~~~~~~~~H-GT~vagiiag~~~~~~~~~~~~GiAp~a 112 (346)
T cd07475 62 --------------------------VPFAYNYAD--NNDDILDEDDGSSH-GMHVAGIVAGNGDEEDNGEGIKGVAPEA 112 (346)
T ss_pred --------------------------CCeeEcCCC--CCCccCCCCCCCCc-HHHHHHHHhcCCCccccCCceEEeCCCC
Confidence 000000000 11122225588899 99999999998754 45789999999
Q ss_pred cH----------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcCCCCCCCCC
Q 046331 179 QI----------------SEMLLMMHDATTVGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSAGNRGPRTD 241 (249)
Q Consensus 179 ri----------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~ 241 (249)
+| .++++|+++|++.|++|||||||.........+.+..++.+|.++|++||+||||+|....
T Consensus 113 ~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~ 191 (346)
T cd07475 113 QLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGS 191 (346)
T ss_pred eEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCc
Confidence 54 5689999999999999999999987543334455666777889999999999999986543
No 7
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.85 E-value=4.3e-21 Score=171.89 Aligned_cols=91 Identities=19% Similarity=0.152 Sum_probs=76.0
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH---------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcc
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI---------------SEMLLMMHDATTVGVDLITISIGHAHALNF 210 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri---------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~ 210 (249)
..|..|| ||||||+++|+.. ....|+||+++| .++++||+||++.|+||||||||.......
T Consensus 46 ~~~~~gH-GT~VAgii~g~~~--~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~ 122 (267)
T cd07476 46 DGGASAH-GTHVASLIFGQPC--SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGE 122 (267)
T ss_pred CCCCCCc-HHHHHHHHhcCCC--CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCC
Confidence 3577899 9999999998753 357899999854 579999999999999999999997643334
Q ss_pred hhhHHHHHHHHHHhCCcEEEEcCCCCCCC
Q 046331 211 SDESISIGSFHAMKNGILTSNSAGNRGPR 239 (249)
Q Consensus 211 ~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~ 239 (249)
....+..++.+|.++||+||+||||+|+.
T Consensus 123 ~~~~l~~a~~~a~~~gvlvv~AaGN~g~~ 151 (267)
T cd07476 123 ADPILANAVAMCQQNNVLIVAAAGNEGCA 151 (267)
T ss_pred CCHHHHHHHHHHHHCCCEEEEecCCCCCC
Confidence 45667778888999999999999999965
No 8
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.85 E-value=7.9e-21 Score=179.15 Aligned_cols=97 Identities=24% Similarity=0.276 Sum_probs=75.6
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH----------------HHHHHHHHHHHHCCCcEEEeccCCCCCCc
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI----------------SEMLLMMHDATTVGVDLITISIGHAHALN 209 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri----------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~ 209 (249)
..|+.|| ||||||||||+...+..+.|+||+++| .++++||++|++.|+||||||||.....+
T Consensus 181 ~~d~~gH-GThVAGIIAg~~~~~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG~~~~~~ 259 (412)
T cd04857 181 VTDSGAH-GTHVAGIAAAHFPEEPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYGEATHWP 259 (412)
T ss_pred CCCCCCC-HHHHHHHHhCCCCCCCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCCcCCCCc
Confidence 3588899 999999999987667789999999955 35899999999999999999999874322
Q ss_pred chhhHHHHHHHHHHhCCcEEEEcCCCCCCCCCce
Q 046331 210 FSDESISIGSFHAMKNGILTSNSAGNRGPRTDQL 243 (249)
Q Consensus 210 ~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~tv 243 (249)
......+.....+.++||++|+||||+||...|+
T Consensus 260 ~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv 293 (412)
T cd04857 260 NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTV 293 (412)
T ss_pred cchHHHHHHHHHHHhCCCEEEEECCCCCCCcccc
Confidence 2112222222234579999999999999877665
No 9
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.85 E-value=5.3e-21 Score=172.06 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=68.1
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH---------HHHHHHHHHHHHCCCcEEEeccCCCCCCcchhhHHH
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI---------SEMLLMMHDATTVGVDLITISIGHAHALNFSDESIS 216 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri---------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~ 216 (249)
..|..|| |||||+|++ |+||+++| +++++||+||++.|++|||||||......+....+.
T Consensus 44 ~~d~~gH-GT~vAgii~----------GvAP~a~l~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~ 112 (275)
T cd05562 44 GSGGGDE-GRAMLEIIH----------DIAPGAELAFHTAGGGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIA 112 (275)
T ss_pred CCCCCch-HHHHHHHHh----------ccCCCCEEEEEecCCCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHH
Confidence 4588899 999999995 66777744 899999999999999999999998642222234566
Q ss_pred HHHHHHHhC-CcEEEEcCCCCCCCC
Q 046331 217 IGSFHAMKN-GILTSNSAGNRGPRT 240 (249)
Q Consensus 217 ~~~~~a~~~-Gi~Vv~aAGN~Gp~~ 240 (249)
.++.+|.++ |++||+||||+|+..
T Consensus 113 ~ai~~a~~~~GvlvVaAAGN~g~~~ 137 (275)
T cd05562 113 QAVDEVVASPGVLYFSSAGNDGQSG 137 (275)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCCCC
Confidence 677788887 999999999999853
No 10
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.85 E-value=5.8e-21 Score=174.64 Aligned_cols=99 Identities=17% Similarity=0.062 Sum_probs=66.8
Q ss_pred CccccCCCcccchhhccccccCC---------CCCcccccCCCcH--------------HHHHHH-------HHHH--HH
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGK---------DVSFSRTGKKKQI--------------SEMLLM-------MHDA--TT 192 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~---------~~~~~G~a~~~ri--------------~~i~~a-------i~~A--i~ 192 (249)
.+.|.+|| ||||||||||.... ...+.|+||+++| ..++++ ++|+ .+
T Consensus 51 ~~~D~~gH-GThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 129 (311)
T cd07497 51 IMYDFFSH-GTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGG 129 (311)
T ss_pred CCCCcccc-chhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccC
Confidence 46899999 99999999997532 2457899999955 223333 3333 36
Q ss_pred CCCcEEEeccCCCCCCc-ch---hhHHHHHHHH-HHhCCcEEEEcCCCCCCCCCcee
Q 046331 193 VGVDLITISIGHAHALN-FS---DESISIGSFH-AMKNGILTSNSAGNRGPRTDQLL 244 (249)
Q Consensus 193 ~gvdVI~~SlG~~~~~~-~~---~~~i~~~~~~-a~~~Gi~Vv~aAGN~Gp~~~tv~ 244 (249)
+++||||||||...... .+ .+..+..... +.++||+||+||||+|+...|+.
T Consensus 130 ~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~ 186 (311)
T cd07497 130 PRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTIT 186 (311)
T ss_pred CCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCcccc
Confidence 79999999999863210 00 1111111111 24899999999999999876654
No 11
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.84 E-value=1.5e-20 Score=167.91 Aligned_cols=93 Identities=16% Similarity=0.057 Sum_probs=72.9
Q ss_pred ccccCCCcccchhhccccccCCCCCcc-------cccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCC
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFS-------RTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGH 204 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~-------G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~ 204 (249)
..|..|| ||||||++++.... .... |+||+++| .++++||+||++.|++|||||||.
T Consensus 57 ~~~~~gH-GT~VAgiia~~~~~-~~~~g~i~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~ 134 (273)
T cd07485 57 VSVGGGH-GTHVAGTIAAVNNN-GGGVGGIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGG 134 (273)
T ss_pred CCCCCCC-HHHHHHHHHcccCC-CcceeccccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 4577899 99999999987532 2233 48999944 779999999999999999999998
Q ss_pred CCCCcchhhHHHHHHHHHHhC-------CcEEEEcCCCCCCCCC
Q 046331 205 AHALNFSDESISIGSFHAMKN-------GILTSNSAGNRGPRTD 241 (249)
Q Consensus 205 ~~~~~~~~~~i~~~~~~a~~~-------Gi~Vv~aAGN~Gp~~~ 241 (249)
..+ ..+...+..++..+.++ |++||+||||+|+...
T Consensus 135 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~ 177 (273)
T cd07485 135 TGG-GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEH 177 (273)
T ss_pred CCc-cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCC
Confidence 742 22334556666777777 9999999999987654
No 12
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.84 E-value=1.6e-20 Score=169.79 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=71.3
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCC-----
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAH----- 206 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~----- 206 (249)
+.|.+|| |||||++++|+... ....|+||+++| +++++||+||++.|++|||+|||...
T Consensus 42 ~~d~~gH-GT~VAgiiag~~~~-~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~ 119 (297)
T cd07480 42 VQDGHGH-GTHCAGTIFGRDVP-GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVD 119 (297)
T ss_pred CCCCCCc-HHHHHHHHhcccCC-CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCccccc
Confidence 4678899 99999999998654 345799999954 67999999999999999999999853
Q ss_pred ----CCcchhhHHHHHHH---------------HHHhCCcEEEEcCCCCCCCCCc
Q 046331 207 ----ALNFSDESISIGSF---------------HAMKNGILTSNSAGNRGPRTDQ 242 (249)
Q Consensus 207 ----~~~~~~~~i~~~~~---------------~a~~~Gi~Vv~aAGN~Gp~~~t 242 (249)
........++.... .+.++|++||+||||+|+.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~ 174 (297)
T cd07480 120 QGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAG 174 (297)
T ss_pred ccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCC
Confidence 11111222222222 3378999999999999865443
No 13
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.84 E-value=1.6e-20 Score=165.36 Aligned_cols=97 Identities=15% Similarity=0.299 Sum_probs=81.1
Q ss_pred CccccCCCcccchhhccccccCC-CCCcccccCCCcH--------------HHHHHHHHHHHHC----CCcEEEeccCCC
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGK-DVSFSRTGKKKQI--------------SEMLLMMHDATTV----GVDLITISIGHA 205 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~-~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~----gvdVI~~SlG~~ 205 (249)
...|..|| |||||++++|.... ...+.|+||+++| ++++.||+|+++. +++|||||||..
T Consensus 39 ~~~d~~~H-GT~vAgiiag~~~~~~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~ 117 (264)
T cd07487 39 TPYDDNGH-GTHVAGIIAGSGRASNGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAP 117 (264)
T ss_pred CCCCCCCc-hHHHHHHHhcCCcccCCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCC
Confidence 35677899 99999999998654 4568999999954 7899999999998 999999999987
Q ss_pred CCCcchhhHHHHHHHHHHhCCcEEEEcCCCCCCCCCc
Q 046331 206 HALNFSDESISIGSFHAMKNGILTSNSAGNRGPRTDQ 242 (249)
Q Consensus 206 ~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~t 242 (249)
.......+.+..++.++.++|++||+||||+|+...+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~ 154 (264)
T cd07487 118 PDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGT 154 (264)
T ss_pred CCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCc
Confidence 5433455667777888999999999999999977654
No 14
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.84 E-value=1.9e-20 Score=165.06 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=78.0
Q ss_pred CccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcc
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALNF 210 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~ 210 (249)
.+.|..|| |||||++++|.......+.|+||+++| .+++++|++|++.+++|||+|||....
T Consensus 58 ~~~d~~~H-GT~va~ii~~~~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~--- 133 (259)
T cd07473 58 DPMDDNGH-GTHVAGIIGAVGNNGIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP--- 133 (259)
T ss_pred CCCCCCCc-HHHHHHHHHCcCCCCCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---
Confidence 56788999 999999999988777778999999955 789999999999999999999998753
Q ss_pred hhhHHHHHHHHHHhCCcEEEEcCCCCCCC
Q 046331 211 SDESISIGSFHAMKNGILTSNSAGNRGPR 239 (249)
Q Consensus 211 ~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~ 239 (249)
...+..++.++.++|+++|+||||+|..
T Consensus 134 -~~~~~~~~~~~~~~g~ivV~aaGN~g~~ 161 (259)
T cd07473 134 -SQALRDAIARAIDAGILFVAAAGNDGTN 161 (259)
T ss_pred -CHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 3455556678889999999999999976
No 15
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=3.5e-20 Score=166.49 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=77.0
Q ss_pred CccccCCCcccchhhccccccCCCCCcccccCCCcH-------------HHHHHHHHHHH----------HCCCcEEEec
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI-------------SEMLLMMHDAT----------TVGVDLITIS 201 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri-------------~~i~~ai~~Ai----------~~gvdVI~~S 201 (249)
..+|..|| ||||||||++...++..+.|+||+++| +++++||+||+ .++++|||||
T Consensus 66 ~~~~~~~H-GT~vAgiiaa~~~~~~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S 144 (285)
T cd07496 66 GVSPSSWH-GTHVAGTIAAVTNNGVGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLS 144 (285)
T ss_pred CCCCCCCC-HHHHHHHHhCcCCCCCCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeC
Confidence 45678899 999999999988777788999999965 78999999998 5679999999
Q ss_pred cCCCCCCcchhhHHHHHHHHHHhCCcEEEEcCCCCCCCC
Q 046331 202 IGHAHALNFSDESISIGSFHAMKNGILTSNSAGNRGPRT 240 (249)
Q Consensus 202 lG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~ 240 (249)
||..... ...+..++..+.++|++||+||||+|+..
T Consensus 145 ~G~~~~~---~~~~~~ai~~a~~~GvivV~AAGN~g~~~ 180 (285)
T cd07496 145 LGGDGAC---SATMQNAINDVRARGVLVVVAAGNEGSSA 180 (285)
T ss_pred CCCCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCCCC
Confidence 9987431 33455566778899999999999999875
No 16
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=3.7e-20 Score=168.31 Aligned_cols=91 Identities=20% Similarity=0.356 Sum_probs=75.7
Q ss_pred CccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcc
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALNF 210 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~ 210 (249)
.+.|..|| |||||+++++...+ ..+.|+||+++| ..++++|++|+++|++|||||||.....
T Consensus 63 ~~~d~~gH-GT~vAgiia~~~~~-~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~~~-- 138 (312)
T cd07489 63 DPMDCQGH-GTHVAGIIAANPNA-YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSGW-- 138 (312)
T ss_pred CCCCCCCc-HHHHHHHHhcCCCC-CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCCCC--
Confidence 46678999 99999999998654 678899999955 6689999999999999999999986422
Q ss_pred hhhHHHHHHHHHHhCCcEEEEcCCCCCCC
Q 046331 211 SDESISIGSFHAMKNGILTSNSAGNRGPR 239 (249)
Q Consensus 211 ~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~ 239 (249)
..+.+...+.++.++|+++|+||||+|..
T Consensus 139 ~~~~~~~~~~~~~~~gv~iv~aaGN~g~~ 167 (312)
T cd07489 139 SEDPWAVVASRIVDAGVVVTIAAGNDGER 167 (312)
T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCCCC
Confidence 22555556677889999999999999865
No 17
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=3.1e-20 Score=164.65 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=69.1
Q ss_pred cccCCCcccchhhccccccCCCCCcccccC-----------CCcHHHHHHHHHHHHHCCCcEEEeccCCCCCCc--chhh
Q 046331 147 REIEGSQMSHTSSTAAGKRGKDVSFSRTGK-----------KKQISEMLLMMHDATTVGVDLITISIGHAHALN--FSDE 213 (249)
Q Consensus 147 ~D~~GH~GThvA~i~ag~~~~~~~~~G~a~-----------~~ri~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~--~~~~ 213 (249)
.|..|| |||||+|++|- .+++.++-+.- ......+++||+||+++|+||||||||...+.. ...+
T Consensus 46 ~d~~gH-GT~vAgiI~gv-ap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~ 123 (247)
T cd07491 46 VSADGH-GTAMARMICRI-CPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDIN 123 (247)
T ss_pred CCCCCc-HHHHHHHHHHH-CCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchH
Confidence 578899 99999999852 23333332211 011257999999999999999999999874311 1246
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCCCCCC
Q 046331 214 SISIGSFHAMKNGILTSNSAGNRGPRTD 241 (249)
Q Consensus 214 ~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~ 241 (249)
.+..++.+|.++||+||+||||+|+...
T Consensus 124 ~l~~ai~~A~~~GilvvaaAGN~g~~~~ 151 (247)
T cd07491 124 ELENAIKEALDRGILLFCSASDQGAFTG 151 (247)
T ss_pred HHHHHHHHHHhCCeEEEEecCCCCCcCC
Confidence 6777888999999999999999997654
No 18
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=7.1e-20 Score=160.09 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=81.0
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcch
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALNFS 211 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~ 211 (249)
+.|..|| |||||++++|+..+...+.|+||+++| ++++++++||++.+++|||||||.......+
T Consensus 36 ~~~~~~H-GT~vAgiiag~~~~~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~ 114 (242)
T cd07498 36 TSDIDGH-GTACAGVAAAVGNNGLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESI 114 (242)
T ss_pred CCCCCCC-HHHHHHHHHhccCCCceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchH
Confidence 4678899 999999999987666778999999954 7799999999999999999999987544445
Q ss_pred hhHHHHHHHHHHh-CCcEEEEcCCCCCCCCC
Q 046331 212 DESISIGSFHAMK-NGILTSNSAGNRGPRTD 241 (249)
Q Consensus 212 ~~~i~~~~~~a~~-~Gi~Vv~aAGN~Gp~~~ 241 (249)
...+..++..+.+ +|+++|+||||+|....
T Consensus 115 ~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~ 145 (242)
T cd07498 115 SSAIDNAATYGRNGKGGVVLFAAGNSGRSVS 145 (242)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCccC
Confidence 6677777788888 99999999999997643
No 19
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=5.5e-20 Score=161.93 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=71.6
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH-----------------HHHHHHHHHHHHCCCcEEEeccCCCCCC
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI-----------------SEMLLMMHDATTVGVDLITISIGHAHAL 208 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri-----------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~ 208 (249)
+.|..|| |||||+|+++..... .|+||+++| .++++||+||++.|++|||||||+..
T Consensus 32 ~~~~~~H-GT~vAgiia~~~~~~---~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 32 APAPSAH-GTAVASLLAGAGAQR---PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred CCCCCCC-HHHHHHHHhCCCCCC---cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 4577899 999999999986432 788988844 56999999999999999999999752
Q ss_pred cchhhHHHHHHHHHHhCCcEEEEcCCCCCCCC
Q 046331 209 NFSDESISIGSFHAMKNGILTSNSAGNRGPRT 240 (249)
Q Consensus 209 ~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~ 240 (249)
.+.++.++.+|.++||+||+||||+|+..
T Consensus 106 ---~~~l~~ai~~a~~~gilvv~AaGN~g~~~ 134 (239)
T cd05561 106 ---NALLAAAVAAAAARGMVLVAAAGNDGPAA 134 (239)
T ss_pred ---CHHHHHHHHHHHHCCCEEEEecCCCCCCC
Confidence 23456667789999999999999999754
No 20
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=6.6e-20 Score=164.54 Aligned_cols=95 Identities=23% Similarity=0.368 Sum_probs=79.6
Q ss_pred CccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcc
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALNF 210 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~ 210 (249)
...|..|| |||||++++|...+...+.|+||+++| .+++.||+||++.+++|||||||.....
T Consensus 57 ~~~~~~~H-GT~vAgiiag~~~n~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-- 133 (295)
T cd07474 57 SAGDATGH-GTHVAGIIAGNGVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-- 133 (295)
T ss_pred CCCCCCCc-HHHHHHHHhcCCCccCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC--
Confidence 35688999 999999999987777788899999955 7799999999999999999999976421
Q ss_pred hhhHHHHHHHHHHhCCcEEEEcCCCCCCCCCc
Q 046331 211 SDESISIGSFHAMKNGILTSNSAGNRGPRTDQ 242 (249)
Q Consensus 211 ~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~t 242 (249)
..+.+..++.++.++||++|+||||+|....+
T Consensus 134 ~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~ 165 (295)
T cd07474 134 PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYT 165 (295)
T ss_pred CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCc
Confidence 23456667778899999999999999876543
No 21
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=6.6e-20 Score=166.64 Aligned_cols=136 Identities=16% Similarity=0.114 Sum_probs=99.8
Q ss_pred hhhhhcccccCccccccccceEEEEecCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcchhHHHHHHhhhcCcccccCC
Q 046331 14 MLRFCKITLSWDYFRLVKESCVYGRLALSGGTCNSCSFGNRMQDADLWPNRCLPPNPPLEVEFVLFHKLASMYPELMSSS 93 (249)
Q Consensus 14 ~~~~~~tt~sw~~l~l~g~gviigvi~dtGi~~~~~sf~~~~~~~~~w~g~c~~~~n~~ea~~~~~~kLi~~~~~~~~~~ 93 (249)
+.++++.++.|+ .|+.|+|+.|+|| |||++..|+ |.... +.+....
T Consensus 4 ~~~~l~~~~~~~-~G~~G~Gv~VaVi-DTGv~~~h~-~~~~~-----~~~~~~~-------------------------- 49 (298)
T cd07494 4 LAALLNATRVHQ-RGITGRGVRVAMV-DTGFYAHPF-FESRG-----YQVRVVL-------------------------- 49 (298)
T ss_pred HhhhcChhHHHh-cCCCCCCcEEEEE-eCCCcCCch-hhcCC-----ccceeec--------------------------
Confidence 445677888886 7999999999999 999998887 65320 1110000
Q ss_pred cceeecchhHHHHHHHHHHHHhcCCceeccccCcccccccccCCCCCCCCCCccccCCCcccchhhccccccCCCCCccc
Q 046331 94 QLAFISPYRHQVKQFQEWFKETFGELVDMTTTDGCQIIRAWCHPSSEAGNYTAREIEGSQMSHTSSTAAGKRGKDVSFSR 173 (249)
Q Consensus 94 ~igvItPy~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~~~~~~~~~~~~~~~~D~~GH~GThvA~i~ag~~~~~~~~~G 173 (249)
......+..|.+|| |||||+++ .|
T Consensus 50 ---------------------------------------------~~~~~~~~~D~~gH-GT~vag~i----------~G 73 (298)
T cd07494 50 ---------------------------------------------APGATDPACDENGH-GTGESANL----------FA 73 (298)
T ss_pred ---------------------------------------------CCCCCCCCCCCCCc-chheeece----------eE
Confidence 00001135688899 99999764 47
Q ss_pred ccCCCcH----------HHHHHHHHHHHHCCCcEEEeccCCCCCCc---------chhhHHHHHHHHHHhCCcEEEEcCC
Q 046331 174 TGKKKQI----------SEMLLMMHDATTVGVDLITISIGHAHALN---------FSDESISIGSFHAMKNGILTSNSAG 234 (249)
Q Consensus 174 ~a~~~ri----------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~---------~~~~~i~~~~~~a~~~Gi~Vv~aAG 234 (249)
+||+++| +++++||+||++.|+||||||||.....+ .....++.++.+|.++||+||+|||
T Consensus 74 vAP~a~i~~vkv~~~~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAG 153 (298)
T cd07494 74 IAPGAQFIGVKLGGPDLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAG 153 (298)
T ss_pred eCCCCeEEEEEccCCCcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCC
Confidence 7888744 67999999999999999999999863211 1244577788889999999999999
Q ss_pred CCCCC
Q 046331 235 NRGPR 239 (249)
Q Consensus 235 N~Gp~ 239 (249)
|++..
T Consensus 154 N~~~~ 158 (298)
T cd07494 154 NGGWS 158 (298)
T ss_pred CCCCC
Confidence 99853
No 22
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.82 E-value=1.2e-19 Score=161.26 Aligned_cols=93 Identities=22% Similarity=0.233 Sum_probs=73.0
Q ss_pred CccccCCCcccchhhccccccCCCCCcccccCCCcH-------------HHHHHHHHHHHH------------CCCcEEE
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI-------------SEMLLMMHDATT------------VGVDLIT 199 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri-------------~~i~~ai~~Ai~------------~gvdVI~ 199 (249)
.|.|..|| ||||||+++|...... ..|+||+++| .+++++++++++ .|++|||
T Consensus 47 ~~~d~~~H-GT~vagii~g~~~~~~-~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin 124 (264)
T cd07481 47 LPYDDNGH-GTHTMGTMVGNDGDGQ-QIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVIN 124 (264)
T ss_pred CCCCCCCc-hhhhhhheeecCCCCC-ceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEE
Confidence 45688899 9999999998765433 3999999954 679999999975 7899999
Q ss_pred eccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcCCCCCCCCCc
Q 046331 200 ISIGHAHALNFSDESISIGSFHAMKNGILTSNSAGNRGPRTDQ 242 (249)
Q Consensus 200 ~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~t 242 (249)
||||.... ....+..++..+.++|++||+||||+|....+
T Consensus 125 ~S~G~~~~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~ 164 (264)
T cd07481 125 NSWGGPSG---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCST 164 (264)
T ss_pred eCCCcCCC---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Confidence 99998743 12334445566778999999999999876443
No 23
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.81 E-value=1.2e-19 Score=160.52 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=76.2
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcch
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALNFS 211 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~ 211 (249)
+.|..|| ||||||++++.......+.|+||+++| .++++||++|++.|++|||||||....
T Consensus 64 ~~d~~~H-GT~vagii~~~~~~~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~~---- 138 (260)
T cd07484 64 AMDDNGH-GTHVAGIIAAATNNGTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGLG---- 138 (260)
T ss_pred CCCCCCc-HHHHHHHHhCccCCCCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCCC----
Confidence 4577899 999999999987666678899999955 789999999999999999999998742
Q ss_pred hhHHHHHHHHHHhCCcEEEEcCCCCCCCC
Q 046331 212 DESISIGSFHAMKNGILTSNSAGNRGPRT 240 (249)
Q Consensus 212 ~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~ 240 (249)
...+..++..+.++|++||+||||+|+..
T Consensus 139 ~~~~~~~~~~a~~~gilvV~aaGN~g~~~ 167 (260)
T cd07484 139 STALQEAINYAWNKGVVVVAAAGNEGVSS 167 (260)
T ss_pred CHHHHHHHHHHHHCCCEEEEeCCCCCCCC
Confidence 34455566778899999999999999863
No 24
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.81 E-value=1.6e-19 Score=160.08 Aligned_cols=90 Identities=27% Similarity=0.232 Sum_probs=73.5
Q ss_pred cccCCCcccchhhccccccCCCCCcccccCCCcH----------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcc
Q 046331 147 REIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI----------------SEMLLMMHDATTVGVDLITISIGHAHALNF 210 (249)
Q Consensus 147 ~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri----------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~ 210 (249)
.|.+|| |||||++++|... ..+.|+||+++| .+++.|++||.+.|++|||||||.......
T Consensus 44 ~~~~~H-GT~vagiia~~~~--~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~ 120 (261)
T cd07493 44 YTDDDH-GTAVLSTMAGYTP--GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNP 120 (261)
T ss_pred CCCCCc-hhhhheeeeeCCC--CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCc
Confidence 678899 9999999998753 347899999843 568899999999999999999997642111
Q ss_pred -----------hhhHHHHHHHHHHhCCcEEEEcCCCCCCC
Q 046331 211 -----------SDESISIGSFHAMKNGILTSNSAGNRGPR 239 (249)
Q Consensus 211 -----------~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~ 239 (249)
....+..++..|.++|++||+||||+|..
T Consensus 121 ~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~ 160 (261)
T cd07493 121 TYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGST 160 (261)
T ss_pred ccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCC
Confidence 12356677788999999999999999976
No 25
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.80 E-value=4.1e-19 Score=158.93 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=72.9
Q ss_pred CccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCc-
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALN- 209 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~- 209 (249)
...|..|| ||||||+++++.. ..|+||+++| .++++||+||++.|++|||||||......
T Consensus 48 ~~~d~~gH-GT~vAgiia~~~~----~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~ 122 (294)
T cd07482 48 DIVDKLGH-GTAVAGQIAANGN----IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGG 122 (294)
T ss_pred cCCCCCCc-HhHHHHHHhcCCC----CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCc
Confidence 35688999 9999999998642 3499999955 68999999999999999999999753211
Q ss_pred ------chhhHHHHHHHHHHhCCcEEEEcCCCCCCCC
Q 046331 210 ------FSDESISIGSFHAMKNGILTSNSAGNRGPRT 240 (249)
Q Consensus 210 ------~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~ 240 (249)
...+.+..++..+.++|++||+||||+|...
T Consensus 123 ~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 123 EYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred ccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 1224456666778899999999999999754
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.80 E-value=4.3e-19 Score=158.93 Aligned_cols=90 Identities=19% Similarity=0.269 Sum_probs=69.4
Q ss_pred ccCCCcccchhhccccccCCCC---CcccccCCCcH---------------HHHHHHHHHHHHCCCcEEEeccCCCCCC-
Q 046331 148 EIEGSQMSHTSSTAAGKRGKDV---SFSRTGKKKQI---------------SEMLLMMHDATTVGVDLITISIGHAHAL- 208 (249)
Q Consensus 148 D~~GH~GThvA~i~ag~~~~~~---~~~G~a~~~ri---------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~- 208 (249)
|..|| ||||||+|+|...... .+.|+||+++| .++..+++++.+.+++|||+|||.....
T Consensus 52 d~~~H-GT~vAgiia~~~~~~~~~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~ 130 (293)
T cd04842 52 DVDGH-GTHVAGIIAGKGNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG 130 (293)
T ss_pred CCCCC-cchhheeeccCCcCCCcccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc
Confidence 78999 9999999999875544 68999999955 3389999999999999999999987532
Q ss_pred -cchhhHHHHHHHHHHh-CCcEEEEcCCCCCCCCC
Q 046331 209 -NFSDESISIGSFHAMK-NGILTSNSAGNRGPRTD 241 (249)
Q Consensus 209 -~~~~~~i~~~~~~a~~-~Gi~Vv~aAGN~Gp~~~ 241 (249)
......+.. .+.+ +|++||+||||+|....
T Consensus 131 ~~~~~~~~~~---~~~~~~g~lvV~aAGN~g~~~~ 162 (293)
T cd04842 131 YTLLARAYDQ---FAYNNPDILFVFSAGNDGNDGS 162 (293)
T ss_pred cchHHHHHHH---HHHhCCCeEEEEeCCCCCCCCC
Confidence 222222221 1223 89999999999997654
No 27
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.79 E-value=5.8e-19 Score=155.21 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=69.8
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH-------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcchh
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI-------------SEMLLMMHDATTVGVDLITISIGHAHALNFSD 212 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri-------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~~ 212 (249)
+.|..|| |||||++++++.. +....|+||+++| +++++||+||++.+++|||||||..... .
T Consensus 39 ~~d~~~H-GT~vAgiia~~~~-~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~ 113 (254)
T cd07490 39 VFDAGGH-GTHVSGTIGGGGA-KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---E 113 (254)
T ss_pred CCCCCCc-HHHHHHHHhcCCC-CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---C
Confidence 4578899 9999999999876 4456799999954 7899999999999999999999987431 2
Q ss_pred hHHHHHHHHHH-hCCcEEEEcCCCCCCC
Q 046331 213 ESISIGSFHAM-KNGILTSNSAGNRGPR 239 (249)
Q Consensus 213 ~~i~~~~~~a~-~~Gi~Vv~aAGN~Gp~ 239 (249)
+.+...+.... ++|++||+||||+|..
T Consensus 114 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~ 141 (254)
T cd07490 114 DPLEEAVEALSNQTGALFVVSAGNEGHG 141 (254)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCCCC
Confidence 23333332333 2699999999999976
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.77 E-value=9.2e-19 Score=157.69 Aligned_cols=135 Identities=15% Similarity=0.098 Sum_probs=101.8
Q ss_pred cccCccccccccceEEEEecCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcchhHHHHHHhhhcCcccccCCcceeecc
Q 046331 21 TLSWDYFRLVKESCVYGRLALSGGTCNSCSFGNRMQDADLWPNRCLPPNPPLEVEFVLFHKLASMYPELMSSSQLAFISP 100 (249)
Q Consensus 21 t~sw~~l~l~g~gviigvi~dtGi~~~~~sf~~~~~~~~~w~g~c~~~~n~~ea~~~~~~kLi~~~~~~~~~~~igvItP 100 (249)
-+.|+..+-.|.+|.|++| |+||++.||+|..... ...
T Consensus 5 ~~aw~~~~g~G~gV~Vavi-DtGid~~Hpdl~~~~~------------------~~~----------------------- 42 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDI-EQGWNLNHEDLVGNGI------------------TLI----------------------- 42 (277)
T ss_pred HHHHHhcCCCCCcEEEEEe-cCCCCCCChhhccccc------------------ccc-----------------------
Confidence 4679988878999999999 9999999999985310 000
Q ss_pred hhHHHHHHHHHHHHhcCCceeccccCcccccccccCCCCCCCCCCccccCCCcccchhhccccccCCCCCcccccCCCcH
Q 046331 101 YRHQVKQFQEWFKETFGELVDMTTTDGCQIIRAWCHPSSEAGNYTAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI 180 (249)
Q Consensus 101 y~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~~~~~~~~~~~~~~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri 180 (249)
.. ..+.|++|| ||||||||++.. ++.++.|+||+++|
T Consensus 43 --------------------------------------~~---~~~~d~~gH-GT~VAGiIaa~~-n~~G~~GvAp~a~l 79 (277)
T cd04843 43 --------------------------------------SG---LTDQADSDH-GTAVLGIIVAKD-NGIGVTGIAHGAQA 79 (277)
T ss_pred --------------------------------------CC---CCCCCCCCC-cchhheeeeeec-CCCceeeeccCCEE
Confidence 00 014578899 999999999863 45568899999955
Q ss_pred --------HHHHHHHHHHHH----CCCcEEEeccCCCCCCc-----chhhHHHHHHHHHHhCCcEEEEcCCCCCCCC
Q 046331 181 --------SEMLLMMHDATT----VGVDLITISIGHAHALN-----FSDESISIGSFHAMKNGILTSNSAGNRGPRT 240 (249)
Q Consensus 181 --------~~i~~ai~~Ai~----~gvdVI~~SlG~~~~~~-----~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~ 240 (249)
++++++|.+|++ .++.+||||||...... .....+..++.+|.++|++||+||||++...
T Consensus 80 ~~i~v~~~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~ 156 (277)
T cd04843 80 AVVSSTRVSNTADAILDAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDL 156 (277)
T ss_pred EEEEecCCCCHHHHHHHHHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccc
Confidence 568889999988 34678899999863211 1234455577788899999999999998753
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.77 E-value=2.4e-18 Score=148.73 Aligned_cols=92 Identities=21% Similarity=0.287 Sum_probs=75.2
Q ss_pred CccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcc
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALNF 210 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~ 210 (249)
.+.|..+| |||||+++++.... ..+.|+||+++| ++++.++++|++.|++|||||||.....
T Consensus 35 ~~~~~~~H-GT~vA~ii~~~~~~-~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~~-- 110 (229)
T cd07477 35 DYQDGNGH-GTHVAGIIAALDNG-VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDS-- 110 (229)
T ss_pred CCCCCCCC-HHHHHHHHhcccCC-CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCCC--
Confidence 34678899 99999999987643 367899999955 7899999999999999999999987433
Q ss_pred hhhHHHHHHHHHHhCCcEEEEcCCCCCCCCCc
Q 046331 211 SDESISIGSFHAMKNGILTSNSAGNRGPRTDQ 242 (249)
Q Consensus 211 ~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~t 242 (249)
..+..++..+.++|+++|+||||+|+...+
T Consensus 111 --~~~~~~~~~a~~~giliv~aaGN~~~~~~~ 140 (229)
T cd07477 111 --PALREAIKKAYAAGILVVAAAGNSGNGDSS 140 (229)
T ss_pred --HHHHHHHHHHHHCCCEEEEecCCCCCCCCC
Confidence 234445567889999999999999976544
No 30
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.77 E-value=3.5e-18 Score=149.73 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=76.0
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH---------------HHHHHHHHHHHHCCCcEEEeccCCCCCCc-
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI---------------SEMLLMMHDATTVGVDLITISIGHAHALN- 209 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri---------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~- 209 (249)
..|..+| ||||||+++|.... ....|+||+++| ..++++++++++.+++|||||||......
T Consensus 42 ~~~~~~H-GT~vagiiag~~~~-~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~ 119 (267)
T cd04848 42 NGDGDSH-GTHVAGVIAAARDG-GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDT 119 (267)
T ss_pred CCCCCCh-HHHHHHHHhcCcCC-CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccc
Confidence 4577899 99999999988654 567899999954 56789999999999999999999875221
Q ss_pred ----------chhhHHHHHHHHHHhCCcEEEEcCCCCCCCCCc
Q 046331 210 ----------FSDESISIGSFHAMKNGILTSNSAGNRGPRTDQ 242 (249)
Q Consensus 210 ----------~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~t 242 (249)
...+.+......+.++||++|+||||+|....+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~ 162 (267)
T cd04848 120 VSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPS 162 (267)
T ss_pred cccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCc
Confidence 133455556677889999999999999876443
No 31
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.76 E-value=4.1e-18 Score=147.43 Aligned_cols=93 Identities=9% Similarity=0.012 Sum_probs=69.4
Q ss_pred CccccCCCcccchhhccccccCCCCCccccc--CC---CcHHHHHHHHHHHHHCCCcEEEeccCCCCCCcchhhHHHHHH
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGKDVSFSRTG--KK---KQISEMLLMMHDATTVGVDLITISIGHAHALNFSDESISIGS 219 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a--~~---~ri~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~ 219 (249)
.+.|..|| |||||+++++.. +++.++.+. .. ....++++||+||++.|++|||||||.... .....+..++
T Consensus 39 ~~~d~~gH-GT~vAgiia~~~-p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~--~~~~~~~~~~ 114 (222)
T cd07492 39 EGGDKDGH-GTACAGIIKKYA-PEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD--RDFPLLKELL 114 (222)
T ss_pred CCCCCCCc-HHHHHHHHHccC-CCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC--CcCHHHHHHH
Confidence 34678899 999999999864 344333321 11 134889999999999999999999998742 1224456667
Q ss_pred HHHHhCCcEEEEcCCCCCCCCC
Q 046331 220 FHAMKNGILTSNSAGNRGPRTD 241 (249)
Q Consensus 220 ~~a~~~Gi~Vv~aAGN~Gp~~~ 241 (249)
.+|.++|+++|+||||+++...
T Consensus 115 ~~a~~~g~l~V~aagN~~~~~~ 136 (222)
T cd07492 115 EYAYKAGGIIVAAAPNNNDIGT 136 (222)
T ss_pred HHHHHCCCEEEEECCCCCCCCC
Confidence 7888999999999999986543
No 32
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.76 E-value=3.3e-18 Score=150.96 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=69.1
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHC-----CCcEEEeccCCCC
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTV-----GVDLITISIGHAH 206 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~-----gvdVI~~SlG~~~ 206 (249)
..|..|| |||||+++++. ..|+||+++| ++++++|+|+++. +++|||+|||...
T Consensus 59 ~~d~~~H-GT~vAgiia~~------~~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~ 131 (255)
T cd04077 59 DSDCNGH-GTHVAGTVGGK------TYGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA 131 (255)
T ss_pred CCCCCcc-HHHHHHHHHcc------ccCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC
Confidence 4678899 99999999986 3689999854 7899999999987 4899999999874
Q ss_pred CCcchhhHHHHHHHHHHhCCcEEEEcCCCCCCCC
Q 046331 207 ALNFSDESISIGSFHAMKNGILTSNSAGNRGPRT 240 (249)
Q Consensus 207 ~~~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~ 240 (249)
...+..++.++.++|+++|+||||+|...
T Consensus 132 -----~~~~~~~~~~~~~~g~liV~aaGN~g~~~ 160 (255)
T cd04077 132 -----STALDAAVAAAVNAGVVVVVAAGNSNQDA 160 (255)
T ss_pred -----CHHHHHHHHHHHHCCCEEEEeCCCCCCCC
Confidence 23455566778899999999999999754
No 33
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.75 E-value=3.4e-18 Score=153.75 Aligned_cols=89 Identities=10% Similarity=0.004 Sum_probs=61.6
Q ss_pred ccCCCcccchhhccccccCCCCCcccccCCCcH------------HHHHHHHHHHHHCCCcEEEeccCCCCCCc---chh
Q 046331 148 EIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI------------SEMLLMMHDATTVGVDLITISIGHAHALN---FSD 212 (249)
Q Consensus 148 D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~---~~~ 212 (249)
|..|| ||||||+++|.........|+||+++| ..++.++.++.+ .++|||||||...... ...
T Consensus 82 ~~~gH-GT~vAgiiag~~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~~~~~ 159 (297)
T cd04059 82 DDNSH-GTRCAGEIAAVGNNGICGVGVAPGAKLGGIRMLDGDVTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTVDGPG 159 (297)
T ss_pred ccccc-CcceeeEEEeecCCCcccccccccceEeEEEecCCccccHHHHHHHhcccC-CceEEECCCCCCCCCCccCCCc
Confidence 78899 999999999986544467899999955 234444444443 4699999999764221 111
Q ss_pred hHHHHHHHHHHh-----CCcEEEEcCCCCCC
Q 046331 213 ESISIGSFHAMK-----NGILTSNSAGNRGP 238 (249)
Q Consensus 213 ~~i~~~~~~a~~-----~Gi~Vv~aAGN~Gp 238 (249)
..+..++.++.+ +|++||+||||+|+
T Consensus 160 ~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~ 190 (297)
T cd04059 160 PLAQRALENGVTNGRNGKGSIFVWAAGNGGN 190 (297)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEeCCCCCC
Confidence 222333334433 79999999999998
No 34
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.73 E-value=1.3e-17 Score=150.20 Aligned_cols=96 Identities=16% Similarity=0.062 Sum_probs=70.8
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH------------------HHHHHHHHHHHHCC---CcEEEeccCC
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI------------------SEMLLMMHDATTVG---VDLITISIGH 204 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri------------------~~i~~ai~~Ai~~g---vdVI~~SlG~ 204 (249)
+.|.+|| ||||||+|++.........|++|+++| +++++||+||++.. ++|||||||.
T Consensus 34 ~~d~~gH-GT~vAgiia~~~~~~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~ 112 (291)
T cd04847 34 TADDLGH-GTAVAGLALYGDLTLPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGS 112 (291)
T ss_pred cCCCCCC-hHHHHHHHHcCcccCCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCC
Confidence 5688999 999999999765444567789988843 57899999999854 5999999998
Q ss_pred CCCCcch-hhHHHHHH-HHHHhCCcEEEEcCCCCCCCCCc
Q 046331 205 AHALNFS-DESISIGS-FHAMKNGILTSNSAGNRGPRTDQ 242 (249)
Q Consensus 205 ~~~~~~~-~~~i~~~~-~~a~~~Gi~Vv~aAGN~Gp~~~t 242 (249)
....... ...+..++ ..+.++||+||+||||+|+...+
T Consensus 113 ~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~ 152 (291)
T cd04847 113 PLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAA 152 (291)
T ss_pred CCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccc
Confidence 7432110 11222222 23569999999999999987654
No 35
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.68 E-value=5.5e-17 Score=143.86 Aligned_cols=96 Identities=24% Similarity=0.340 Sum_probs=76.7
Q ss_pred CccccCCCcccchhhcccccc-CCCCCcccccCCCcH-------------HHHHHHHHHHH-HCCCcEEEeccCC--CCC
Q 046331 145 TAREIEGSQMSHTSSTAAGKR-GKDVSFSRTGKKKQI-------------SEMLLMMHDAT-TVGVDLITISIGH--AHA 207 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~-~~~~~~~G~a~~~ri-------------~~i~~ai~~Ai-~~gvdVI~~SlG~--~~~ 207 (249)
...|..|| |||||+++++.. ..+..+.|++|+++| .+++.+|++++ +.+++|||||||. ...
T Consensus 41 ~~~~~~~H-GT~va~ii~~~~~~~~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~ 119 (282)
T PF00082_consen 41 PSDDDNGH-GTHVAGIIAGNGGNNGPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPP 119 (282)
T ss_dssp SSSTSSSH-HHHHHHHHHHTTSSSSSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSS
T ss_pred ccccCCCc-cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccc
Confidence 45788899 999999999987 566677999999954 78999999999 8899999999988 322
Q ss_pred CcchhhHHHHHHHHHHhCCcEEEEcCCCCCCCCC
Q 046331 208 LNFSDESISIGSFHAMKNGILTSNSAGNRGPRTD 241 (249)
Q Consensus 208 ~~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~ 241 (249)
.....+.+..+...+.++|+++|+||||+|+...
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~ 153 (282)
T PF00082_consen 120 DPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDD 153 (282)
T ss_dssp HSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTT
T ss_pred ccccccccccccccccccCcceeecccccccccc
Confidence 2334455666677899999999999999987654
No 36
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.2e-15 Score=142.53 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=72.1
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHHHC---------CCcEEEecc
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDATTV---------GVDLITISI 202 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai~~---------gvdVI~~Sl 202 (249)
..|++|| |||||+++++. -+|+|+.++| +++++++|++++. +..|.||||
T Consensus 253 ~~D~nGH-GTH~AG~I~sK------t~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSl 325 (501)
T KOG1153|consen 253 DEDCNGH-GTHVAGLIGSK------TFGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSL 325 (501)
T ss_pred ccccCCC-cceeeeeeecc------ccccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEec
Confidence 4699999 99999999987 4899999965 9999999999877 489999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHhCCcEEEEcCCCCCCC
Q 046331 203 GHAHALNFSDESISIGSFHAMKNGILTSNSAGNRGPR 239 (249)
Q Consensus 203 G~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~ 239 (249)
|+.. .-++..|+.+|.+.||++++||||+-.+
T Consensus 326 Gg~~-----S~aLn~AV~~A~~~Gi~fa~AAGNe~eD 357 (501)
T KOG1153|consen 326 GGFR-----SAALNMAVNAASERGIHFAVAAGNEHED 357 (501)
T ss_pred CCcc-----cHHHHHHHHHHhhcCeEEEEcCCCcchh
Confidence 9984 2467888999999999999999999643
No 37
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.57 E-value=2.3e-14 Score=122.06 Aligned_cols=93 Identities=20% Similarity=0.311 Sum_probs=72.2
Q ss_pred CccccCCCcccchhhccccccCCCCCcccccCCCcH--------------HHHHHHHHHHH-HCCCcEEEeccCCCCCCc
Q 046331 145 TAREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI--------------SEMLLMMHDAT-TVGVDLITISIGHAHALN 209 (249)
Q Consensus 145 ~~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri--------------~~i~~ai~~Ai-~~gvdVI~~SlG~~~~~~ 209 (249)
...|..+| |||||+++++....... .|++|+++| ..++.+|++++ ..+++|||+|+|.....
T Consensus 39 ~~~~~~~H-Gt~va~~i~~~~~~~~~-~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~- 115 (241)
T cd00306 39 DPDDGNGH-GTHVAGIIAASANNGGG-VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP- 115 (241)
T ss_pred CCCCCCCc-HHHHHHHHhcCCCCCCC-EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-
Confidence 35678899 99999999988654332 788888844 67999999999 89999999999987431
Q ss_pred chhhHHHHHHHHHHhC-CcEEEEcCCCCCCCCC
Q 046331 210 FSDESISIGSFHAMKN-GILTSNSAGNRGPRTD 241 (249)
Q Consensus 210 ~~~~~i~~~~~~a~~~-Gi~Vv~aAGN~Gp~~~ 241 (249)
....+...+.++.++ |+++|+||||++....
T Consensus 116 -~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~ 147 (241)
T cd00306 116 -PSSALSEAIDYALAKLGVLVVAAAGNDGPDGG 147 (241)
T ss_pred -CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCC
Confidence 223344455566676 9999999999997654
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.4e-15 Score=147.95 Aligned_cols=96 Identities=23% Similarity=0.254 Sum_probs=83.7
Q ss_pred ccCCCcccchhhccccccCCCCCcccccCCCcH----------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcch
Q 046331 148 EIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI----------------SEMLLMMHDATTVGVDLITISIGHAHALNFS 211 (249)
Q Consensus 148 D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri----------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~ 211 (249)
+..-| ||||||||+|+........|+|||++| ..+..||..+++..+||||||+|....++..
T Consensus 308 ~Sg~H-GTHVAgIa~anhpe~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a~~pn~ 386 (1304)
T KOG1114|consen 308 VSGPH-GTHVAGIAAANHPETPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDAHLPNS 386 (1304)
T ss_pred cCCCC-cceehhhhccCCCCCccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccCCCCCc
Confidence 34569 999999999999777789999999944 6789999999999999999999998777777
Q ss_pred hhHHHHHHHHHHhCCcEEEEcCCCCCCCCCcee
Q 046331 212 DESISIGSFHAMKNGILTSNSAGNRGPRTDQLL 244 (249)
Q Consensus 212 ~~~i~~~~~~a~~~Gi~Vv~aAGN~Gp~~~tv~ 244 (249)
...++..-..+.++||+.|+||||+||...||-
T Consensus 387 GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVG 419 (1304)
T KOG1114|consen 387 GRVIELLRELVNKRGVIYVSSAGNNGPALTTVG 419 (1304)
T ss_pred chHHHHHHHHhhhccEEEEEeCCCCCCceeecc
Confidence 777777666778999999999999999988873
No 39
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3e-14 Score=137.35 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=111.4
Q ss_pred hhhhhhhcccccCccccccccceEEEEecCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcchhHHHHHHhhhcCccccc
Q 046331 12 VSMLRFCKITLSWDYFRLVKESCVYGRLALSGGTCNSCSFGNRMQDADLWPNRCLPPNPPLEVEFVLFHKLASMYPELMS 91 (249)
Q Consensus 12 ~~~~~~~~tt~sw~~l~l~g~gviigvi~dtGi~~~~~sf~~~~~~~~~w~g~c~~~~n~~ea~~~~~~kLi~~~~~~~~ 91 (249)
..+..+||..+-|. +|+.|.+|.+.++ |||+...||-|++- ++
T Consensus 182 rQv~s~l~Ad~LWk-~GyTGa~VkvAiF-DTGl~~~HPHFrnv-------KE---------------------------- 224 (1033)
T KOG4266|consen 182 RQVTSMLGADHLWK-KGYTGAKVKVAIF-DTGLRADHPHFRNV-------KE---------------------------- 224 (1033)
T ss_pred HHHHHHhchhhHHh-ccccCCceEEEEe-ecccccCCccccch-------hh----------------------------
Confidence 34445667777787 8999999999999 99999999999863 00
Q ss_pred CCcceeecchhHHHHHHHHHHHHhcCCceeccccCcccccccccCCCCCCCCCCccccCCCcccchhhccccccCCCCCc
Q 046331 92 SSQLAFISPYRHQVKQFQEWFKETFGELVDMTTTDGCQIIRAWCHPSSEAGNYTAREIEGSQMSHTSSTAAGKRGKDVSF 171 (249)
Q Consensus 92 ~~~igvItPy~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~~~~~~~~~~~~~~~~D~~GH~GThvA~i~ag~~~~~~~~ 171 (249)
|..|. + ..+-.|.-|| ||+|||++||.. .-
T Consensus 225 ---------------------------------------RTNWT---N---E~tLdD~lgH-GTFVAGvia~~~----ec 254 (1033)
T KOG4266|consen 225 ---------------------------------------RTNWT---N---EDTLDDNLGH-GTFVAGVIAGRN----EC 254 (1033)
T ss_pred ---------------------------------------hcCCc---C---ccccccCccc-ceeEeeeeccch----hh
Confidence 00111 1 1134577899 999999999874 57
Q ss_pred ccccCCCcH--------------HHHHHHHHHHHHCCCcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcCCCCC
Q 046331 172 SRTGKKKQI--------------SEMLLMMHDATTVGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSAGNRG 237 (249)
Q Consensus 172 ~G~a~~~ri--------------~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~G 237 (249)
.|+|+++.| +..+.||.|||....||+|+|+|++. +.+-+.-.-+....+++|++|.|+||+|
T Consensus 255 ~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD---fmD~PFVeKVwEltAnNvIMvSAiGNDG 331 (1033)
T KOG4266|consen 255 LGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD---FMDLPFVEKVWELTANNVIMVSAIGNDG 331 (1033)
T ss_pred cccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc---cccchHHHHHHhhccCcEEEEEecCCCC
Confidence 899999833 88999999999999999999999984 3444444445667889999999999999
Q ss_pred CCCCcee
Q 046331 238 PRTDQLL 244 (249)
Q Consensus 238 p~~~tv~ 244 (249)
|-.+|+.
T Consensus 332 PLYGTLN 338 (1033)
T KOG4266|consen 332 PLYGTLN 338 (1033)
T ss_pred cceeecC
Confidence 9988863
No 40
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.50 E-value=2e-14 Score=127.71 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=63.4
Q ss_pred ccccCCCcccchhhccccccCCCCCcccccCCCcH----------HHHHHHHHHH--HHCCCcEEEeccCCCCCCc----
Q 046331 146 AREIEGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI----------SEMLLMMHDA--TTVGVDLITISIGHAHALN---- 209 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri----------~~i~~ai~~A--i~~gvdVI~~SlG~~~~~~---- 209 (249)
..|.+|| ||||||||||.. |.+|++++ +.+..+++|+ .+.+++|||||||+.....
T Consensus 33 ~~~~~~H-GThVAgiiag~~-------~~~p~a~~~~~~~~~~~~~~~~~~i~~~~~~~~gv~VINmS~G~~~~~~~~~~ 104 (247)
T cd07488 33 NNTFDDH-ATLVASIMGGRD-------GGLPAVNLYSSAFGIKSNNGQWQECLEAQQNGNNVKIINHSYGEGLKRDPRAV 104 (247)
T ss_pred CCCCCCH-HHHHHHHHHhcc-------CCCCccceehhhhCCCCCCccHHHHHHHHHhcCCceEEEeCCccCCCCCcccc
Confidence 5689999 999999999873 23365532 4577788888 6678999999999874322
Q ss_pred -chhhHHHHHHHHHHhC-CcEEEEcCCCCCCCC
Q 046331 210 -FSDESISIGSFHAMKN-GILTSNSAGNRGPRT 240 (249)
Q Consensus 210 -~~~~~i~~~~~~a~~~-Gi~Vv~aAGN~Gp~~ 240 (249)
...+.+..++..+.++ ||+||+||||+|+..
T Consensus 105 ~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~ 137 (247)
T cd07488 105 LYGYALLSLYLDWLSRNYEVINVFSAGNQGKEK 137 (247)
T ss_pred ccccchHHHHHHHHHhhCCEEEEEecCCCCCCc
Confidence 1122345555555555 999999999999853
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.4e-11 Score=110.76 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=72.1
Q ss_pred ccccCCCcccchhhcccccc-CCCCCcccccCCCcH---------------HHHHHHHHHHHHCC--CcEEEeccCCCCC
Q 046331 146 AREIEGSQMSHTSSTAAGKR-GKDVSFSRTGKKKQI---------------SEMLLMMHDATTVG--VDLITISIGHAHA 207 (249)
Q Consensus 146 ~~D~~GH~GThvA~i~ag~~-~~~~~~~G~a~~~ri---------------~~i~~ai~~Ai~~g--vdVI~~SlG~~~~ 207 (249)
..|.++| ||||++++++.. .+.....|++|++++ ++++.+|+++++.+ +++||||+|.. .
T Consensus 179 ~~d~~~h-Gt~vag~ia~~~~~~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~ 256 (508)
T COG1404 179 FLDDNGH-GTHVAGTIAAVIFDNGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-L 256 (508)
T ss_pred CCCCCCC-cceeeeeeeeecccCCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-c
Confidence 4688999 999999999853 344557888888622 77899999999999 99999999985 1
Q ss_pred CcchhhHHHHHHHHHHhCC-cEEEEcCCCCCCCC
Q 046331 208 LNFSDESISIGSFHAMKNG-ILTSNSAGNRGPRT 240 (249)
Q Consensus 208 ~~~~~~~i~~~~~~a~~~G-i~Vv~aAGN~Gp~~ 240 (249)
.......+..+...++..| +++++++||.|...
T Consensus 257 ~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~ 290 (508)
T COG1404 257 SDSASPALGDALAAAANAGGVVIVAAAGNDGSNA 290 (508)
T ss_pred cccccHHHHHHHHHHHHcCCEEEEEecccCCCCC
Confidence 1122344555666777777 99999999998775
No 42
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=98.48 E-value=2.7e-07 Score=86.14 Aligned_cols=71 Identities=18% Similarity=0.118 Sum_probs=58.3
Q ss_pred cccccCCCcH----------HHHHHHHHHHHHC---CCcEEEeccCCCCCC--cchhhHHHHHHHHHHhCCcEEEEcCCC
Q 046331 171 FSRTGKKKQI----------SEMLLMMHDATTV---GVDLITISIGHAHAL--NFSDESISIGSFHAMKNGILTSNSAGN 235 (249)
Q Consensus 171 ~~G~a~~~ri----------~~i~~ai~~Ai~~---gvdVI~~SlG~~~~~--~~~~~~i~~~~~~a~~~Gi~Vv~aAGN 235 (249)
..|+||+++| .+++.+|.+|+.+ +++|||+|||..... ..+.+.+..++.+|.++||+||+|+||
T Consensus 83 ~~gvAP~a~i~~~~~~~~~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaAsGd 162 (361)
T cd04056 83 AGAIAPGANITLYFAPGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAASGD 162 (361)
T ss_pred HHhccCCCeEEEEEECCcCccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEeCCC
Confidence 4688888855 5788999999988 999999999987532 124567777888899999999999999
Q ss_pred CCCCCC
Q 046331 236 RGPRTD 241 (249)
Q Consensus 236 ~Gp~~~ 241 (249)
+|....
T Consensus 163 ~G~~~~ 168 (361)
T cd04056 163 SGAGGC 168 (361)
T ss_pred CCCCCC
Confidence 998764
No 43
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=97.62 E-value=2.5e-05 Score=65.78 Aligned_cols=65 Identities=26% Similarity=0.411 Sum_probs=47.4
Q ss_pred CCCcchhHHH--HHHhhhcCcccccCCcceeecchhHHHHHHHHHHHHhcCCc----eeccccCccccccc
Q 046331 69 NPPLEVEFVL--FHKLASMYPELMSSSQLAFISPYRHQVKQFQEWFKETFGEL----VDMTTTDGCQIIRA 133 (249)
Q Consensus 69 ~n~~ea~~~~--~~kLi~~~~~~~~~~~igvItPy~~Qv~~l~~~~~~~~G~~----vdi~t~DgfqG~~~ 133 (249)
.|+.|++++. .++|....+......+|+|||||+.|+.++++.+....... +.+.|+|.|||.+.
T Consensus 87 ~N~~Ea~~i~~~~~~l~~~~~~~~~~~~I~Iitpy~~Q~~~i~~~l~~~~~~~~~~~~~v~Tvd~~QG~E~ 157 (200)
T PF13087_consen 87 YNPDEAEFIVELVRDLLDNGPDSNKPSSIGIITPYRAQVALIRKALRSRYPSSPIKDIKVSTVDSFQGQEA 157 (200)
T ss_dssp EEHHHHHHHHHHHHHHHHTT--G---GGEEEEES-HHHHHHHHHHHHHCSTCHHHHCSEEEEHHHHTT--E
T ss_pred echhhHHHHHHHHhhhhhccccccccCCceEEcCchHHHHHHHHHHhhhccccccceEEEecHHHhccccc
Confidence 4778888887 67777644432345789999999999999999998777643 89999999999865
No 44
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.31 E-value=0.00014 Score=71.38 Aligned_cols=63 Identities=27% Similarity=0.188 Sum_probs=45.6
Q ss_pred CCCCcchhHHH--HHHhhhcCcccccCCcceeecchhHHHHHHHHHHHHhcCCceeccccCcccccccc
Q 046331 68 PNPPLEVEFVL--FHKLASMYPELMSSSQLAFISPYRHQVKQFQEWFKETFGELVDMTTTDGCQIIRAW 134 (249)
Q Consensus 68 ~~n~~ea~~~~--~~kLi~~~~~~~~~~~igvItPy~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~~~ 134 (249)
-.|..||+++. +..|+...- .+..|||||||++|+.+++..-. .-...++|.|+|+|||++..
T Consensus 501 ~~N~gEa~Iv~~Hv~~L~~~gV---~p~dIaVIsPY~aQv~llR~~~~-~~~~~veV~TVD~fQGrEkd 565 (649)
T KOG1803|consen 501 KYNEGEAKIVMEHVKRLLEAGV---QPSDIAVISPYNAQVSLLREEDE-EDFRDVEVGTVDGFQGREKD 565 (649)
T ss_pred cCCHHHHHHHHHHHHHHHHcCC---ChhHeEEeccchHHHHHHhhccc-ccCccceeecccccccceee
Confidence 36889999988 677776331 23569999999999999992111 11134789999999999653
No 45
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.10 E-value=0.00028 Score=72.44 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=45.1
Q ss_pred CCcchhHHH--HHHhhhcCcccccCCcceeecchhHHHHHHHHHHHHhcCCceeccccCcccccccc
Q 046331 70 PPLEVEFVL--FHKLASMYPELMSSSQLAFISPYRHQVKQFQEWFKETFGELVDMTTTDGCQIIRAW 134 (249)
Q Consensus 70 n~~ea~~~~--~~kLi~~~~~~~~~~~igvItPy~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~~~ 134 (249)
|..||.+.. ...++.... ...+||||+||++|+.+|++.+.... ++|+|+|.||||.+.
T Consensus 952 N~~EA~li~~~~~~fv~sGv---~~~dIGIis~YraQv~Li~~~l~~~~---lEinTVD~yQGRDKd 1012 (1100)
T KOG1805|consen 952 NHGEAKLISELVEDFVKSGV---KPSDIGIISPYRAQVELIRKILSSAV---LEINTVDRYQGRDKD 1012 (1100)
T ss_pred chhHHHHHHHHHHHHHHcCC---CHHHeeeeehHHHHHHHHHhhccccc---eeeeehhhhcCCCCC
Confidence 778888765 444444221 34689999999999999998765443 899999999999653
No 46
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0045 Score=58.10 Aligned_cols=89 Identities=9% Similarity=0.096 Sum_probs=52.5
Q ss_pred CCCcccchhhccccccCCCCCcccccCCCcH-----------HHHHHHHHHHH-HCCCcEEEeccCCCCCCcch------
Q 046331 150 EGSQMSHTSSTAAGKRGKDVSFSRTGKKKQI-----------SEMLLMMHDAT-TVGVDLITISIGHAHALNFS------ 211 (249)
Q Consensus 150 ~GH~GThvA~i~ag~~~~~~~~~G~a~~~ri-----------~~i~~ai~~Ai-~~gvdVI~~SlG~~~~~~~~------ 211 (249)
+.| ||-|||-+++...++.--.|+|-+.++ .|++.|-..-- -...+|-|-|||........
T Consensus 208 nsh-gtrcagev~aardngicgvgvaydskvagirmldqpymtdlieansmghep~kihiysaswgptddgktvdgprna 286 (629)
T KOG3526|consen 208 NSH-GTRCAGEVVAARDNGICGVGVAYDSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNA 286 (629)
T ss_pred hcc-CccccceeeeeccCCceeeeeeeccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhH
Confidence 689 999999888777666555677766644 55544322211 12368889999976321111
Q ss_pred -hhHHHHHHHHHH-hCCcEEEEcCCCCCCC
Q 046331 212 -DESISIGSFHAM-KNGILTSNSAGNRGPR 239 (249)
Q Consensus 212 -~~~i~~~~~~a~-~~Gi~Vv~aAGN~Gp~ 239 (249)
..+|..++..-. -.|-+.|-|.|..|.+
T Consensus 287 tmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 287 TMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred HHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 122222222211 2667888888887754
No 47
>KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification]
Probab=96.24 E-value=0.0063 Score=62.93 Aligned_cols=74 Identities=27% Similarity=0.352 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCcchhHHH--HHHhhhcCccccc-CCcceeecchhHHHHHHHHHHHHhcC---C---ceeccccCcccc
Q 046331 60 LWPNRCLPPNPPLEVEFVL--FHKLASMYPELMS-SSQLAFISPYRHQVKQFQEWFKETFG---E---LVDMTTTDGCQI 130 (249)
Q Consensus 60 ~w~g~c~~~~n~~ea~~~~--~~kLi~~~~~~~~-~~~igvItPy~~Qv~~l~~~~~~~~G---~---~vdi~t~DgfqG 130 (249)
.|.+.-.+..|..|+.|+. +..|...++.... ...+|+|+||+.|+..++.++...++ . .+.+.|+|+|||
T Consensus 663 e~~~~~~s~~n~~E~~~~~~~~~~l~~~~~~~~~~~~~vGvisPY~~q~~~l~~~~~~~~~~~~~~~~~i~v~tvD~fqg 742 (827)
T KOG1801|consen 663 ERAGGGKSPVNNEEVRFVGAIYSRLYKVSQPQVSVPGSVGVISPYKNQVKALRERFPEAYSLLLANNVDLSVSTVDSFQG 742 (827)
T ss_pred cccCCCCCcccHHHHHHHHHHHHHHHhhccccCCCCcceeeECchHHHHHHHHHHHHHHhcchhcccceeEEEecccccC
Confidence 3433335566788888877 7788887776666 78999999999999999999999988 2 367899999999
Q ss_pred ccc
Q 046331 131 IRA 133 (249)
Q Consensus 131 ~~~ 133 (249)
.+.
T Consensus 743 ~e~ 745 (827)
T KOG1801|consen 743 GER 745 (827)
T ss_pred CCC
Confidence 754
No 48
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.97 E-value=0.0081 Score=60.40 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=46.7
Q ss_pred CCCcchhHHH--HHHhhhcCcccccCCcceeecchhHHHHHHHHHHHHhcCCceeccccCccccccc
Q 046331 69 NPPLEVEFVL--FHKLASMYPELMSSSQLAFISPYRHQVKQFQEWFKETFGELVDMTTTDGCQIIRA 133 (249)
Q Consensus 69 ~n~~ea~~~~--~~kLi~~~~~~~~~~~igvItPy~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~~ 133 (249)
.|+.|+.++. ..+|+...- ...+||||+||+.|+.+|++.+... +..+++.|+|+|||++.
T Consensus 505 ~N~~EA~~V~~~v~~l~~~g~---~~~~IgVItPY~aQv~~L~~~l~~~-~~~i~v~TVd~fQG~E~ 567 (637)
T TIGR00376 505 YNPGEAELVSEIIQALVKMGV---PANDIGVITPYDAQVDLLRQLLEHR-HIDIEVSSVDGFQGREK 567 (637)
T ss_pred CCHHHHHHHHHHHHHHHhcCC---CcceEEEEcccHHHHHHHHHHHHhh-CCCeEEccccccCCccc
Confidence 4788898876 566665211 2468999999999999999988543 34578999999999864
No 49
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.78 E-value=0.0072 Score=60.47 Aligned_cols=61 Identities=23% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCcchhHHH--HHHhhhcCcccccCCcceeecchhHHHHHHHHHHHHhcC-------CceeccccCcccccccc
Q 046331 70 PPLEVEFVL--FHKLASMYPELMSSSQLAFISPYRHQVKQFQEWFKETFG-------ELVDMTTTDGCQIIRAW 134 (249)
Q Consensus 70 n~~ea~~~~--~~kLi~~~~~~~~~~~igvItPy~~Qv~~l~~~~~~~~G-------~~vdi~t~DgfqG~~~~ 134 (249)
|..||.++. ..+|+... ....+|||||||..|...|-.. +...| ..++|.++|.|||+++.
T Consensus 705 Nr~Ea~~~ekii~~l~~~g---v~~~qIGVITpYegQr~~i~~y-m~~~gsl~~~ly~~veVasVDaFQGrEKd 774 (935)
T KOG1802|consen 705 NRTEAANCEKIITKLLKSG---VKPSQIGVITPYEGQRSYIVNY-MQTNGSLHKDLYKEVEVASVDAFQGREKD 774 (935)
T ss_pred cHHHHHHHHHHHHHHHHcC---CCHHHeeeecccchhHHHHHHH-HHhcCccccchhheeEEEeeccccCcccc
Confidence 556665554 55665532 2347999999999999888764 45555 45799999999999653
No 50
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=94.17 E-value=0.045 Score=55.25 Aligned_cols=59 Identities=32% Similarity=0.341 Sum_probs=44.3
Q ss_pred CCcchhHHH--HHHhhhcCcccccCCcceeecchhHHHHHHHHHHHHhcCCceeccccCcccccc
Q 046331 70 PPLEVEFVL--FHKLASMYPELMSSSQLAFISPYRHQVKQFQEWFKETFGELVDMTTTDGCQIIR 132 (249)
Q Consensus 70 n~~ea~~~~--~~kLi~~~~~~~~~~~igvItPy~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~ 132 (249)
|..|+.++. .++++...... .++|||+||+.|+..++..+.... ..+++.|+|+|||++
T Consensus 624 n~~e~~~~~~~~~~~~~~~~~~---~~igvis~y~~q~~~i~~~~~~~~-~~v~v~tvd~fQG~E 684 (767)
T COG1112 624 NELEAEIVKVIVDELLKDGLEE---NDIGVISPYRAQVSLIRRLLNEAG-KGVEVGTVDGFQGRE 684 (767)
T ss_pred cHHHHHHHHHHHHHHHHcCCcH---HHcceecccHHHHHHHHHHHHhcC-CceEEeeccccCCcc
Confidence 556666554 56666644322 339999999999999999876554 678999999999985
No 51
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=93.24 E-value=0.096 Score=53.40 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=50.7
Q ss_pred CCcchhHHH--HHHhhh-cCcccccCCcceeecchhHHHHHHHHHHHHhcCCceeccccCccccccc
Q 046331 70 PPLEVEFVL--FHKLAS-MYPELMSSSQLAFISPYRHQVKQFQEWFKETFGELVDMTTTDGCQIIRA 133 (249)
Q Consensus 70 n~~ea~~~~--~~kLi~-~~~~~~~~~~igvItPy~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~~ 133 (249)
|..||.+.+ .+.|+. .| ...+|.+.|+|.+|..++.+.+...++..+-|.|+|+|||.+.
T Consensus 850 NlhEa~mlv~l~kyli~q~y----~psdIviLttY~gQk~ci~rllp~~~~stv~VatVDsfQGeEn 912 (1025)
T KOG1807|consen 850 NLHEAGMLVKLTKYLIQQQY----KPSDIVILTTYNGQKECIKRLLPQNYRSTVQVATVDSFQGEEN 912 (1025)
T ss_pred hHHHHHHHHHHHHHHHhcCC----CccceEEEeechhHHHHHHHHhHHHhcCcceEEEeccccCccc
Confidence 667888877 455666 45 4578999999999999999999999998899999999999753
No 52
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=84.02 E-value=0.89 Score=46.81 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=40.4
Q ss_pred CCcchhHHH-HHH-hhhcCcccccCCcceeecchhHHHHHHHHHHHHhcCCceeccccCccccccccc
Q 046331 70 PPLEVEFVL-FHK-LASMYPELMSSSQLAFISPYRHQVKQFQEWFKETFGELVDMTTTDGCQIIRAWC 135 (249)
Q Consensus 70 n~~ea~~~~-~~k-Li~~~~~~~~~~~igvItPy~~Qv~~l~~~~~~~~G~~vdi~t~DgfqG~~~~~ 135 (249)
|+.|+..++ +.| |...... ....||||+||+.|++.+++.+...-=..+.+..+-.|||.+.+.
T Consensus 587 n~~Ea~~V~~~~k~l~~~~~~--~~~DIgvitpy~aq~~~i~~~l~~~~~~~~~vgsVe~fqGqE~~v 652 (775)
T KOG1804|consen 587 NLEEAAVVVRMTKALPLGEVA--QPQDIGVITPYTAQVSEIRKALRRLGVPGVKVGSVEEFQGQEPWV 652 (775)
T ss_pred cHHHHHHHHHHHhccCCCCcc--ccccceeeCcHHHHHHHHHHHhcccCCCCCcccceeeecccccee
Confidence 556666654 322 2222221 112799999999999999998765433445566677788876443
No 53
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=54.23 E-value=14 Score=39.22 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=27.7
Q ss_pred CCchhhhhhhhcccccCccccccccceEEEEecCCCCCCCCCCcc
Q 046331 8 PQDEVSMLRFCKITLSWDYFRLVKESCVYGRLALSGGTCNSCSFG 52 (249)
Q Consensus 8 ~~~~~~~~~~~~tt~sw~~l~l~g~gviigvi~dtGi~~~~~sf~ 52 (249)
++.|...+-||+ .|-.+.|.||+|+++ |||+||.-|-..
T Consensus 62 pK~Et~a~~FL~-----kyPeYDGRgV~IaIl-DtGvDP~apGl~ 100 (1304)
T KOG1114|consen 62 PKKETGAYEFLK-----KYPEYDGRGVTIAIL-DTGVDPSAPGLQ 100 (1304)
T ss_pred ccchhhHHHHHH-----hCcCCCCCceEEEEe-ecCCCCCCCCce
Confidence 455555555554 233457999999999 999999776654
No 54
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=49.18 E-value=39 Score=30.19 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHCCCcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcCC
Q 046331 182 EMLLMMHDATTVGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSAG 234 (249)
Q Consensus 182 ~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAG 234 (249)
.-+..|+.++..|+|.|-++-... ..+.-++.+|.++||.||+=-.
T Consensus 79 ~Q~~~i~~~ia~~~daIiv~~~d~-------~~~~~~v~~a~~aGIpVv~~d~ 124 (322)
T COG1879 79 KQIAQIEDLIAQGVDAIIINPVDP-------DALTPAVKKAKAAGIPVVTVDS 124 (322)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCh-------hhhHHHHHHHHHCCCcEEEEec
Confidence 456778888999999998876654 2334455789999999986543
No 55
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=36.61 E-value=12 Score=21.95 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=10.1
Q ss_pred ccccCccccccc
Q 046331 20 ITLSWDYFRLVK 31 (249)
Q Consensus 20 tt~sw~~l~l~g 31 (249)
.|++|||+.+.|
T Consensus 16 S~y~WDF~~~fG 27 (28)
T PF08076_consen 16 SIYHWDFCSLFG 27 (28)
T ss_pred ceeehhhhhhhc
Confidence 689999998765
No 56
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=30.33 E-value=1.1e+02 Score=27.74 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHCC----CcEEEeccCCCCCC---cchhhHHHHHHHHHHhCCcEEEEcCCCCC
Q 046331 181 SEMLLMMHDATTVG----VDLITISIGHAHAL---NFSDESISIGSFHAMKNGILTSNSAGNRG 237 (249)
Q Consensus 181 ~~i~~ai~~Ai~~g----vdVI~~SlG~~~~~---~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~G 237 (249)
.+|+.||+.+...+ +|||-+-=||++-. .|-++.+.. ...+.-+.|+.+-|-+=
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~var---ai~~~~~PvisaIGHe~ 118 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVAR---AIAASPIPVISAIGHET 118 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHH---HHHhCCCCEEEecCCCC
Confidence 47899999998765 99999999998521 222334432 23467799999999773
No 57
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=29.96 E-value=1.6e+02 Score=25.30 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHCC-CcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcCC
Q 046331 179 QISEMLLMMHDATTVG-VDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSAG 234 (249)
Q Consensus 179 ri~~i~~ai~~Ai~~g-vdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAG 234 (249)
.+.+++.+|++|.++. +..|-+.+.++.......+.+..++....+.+..|++.+.
T Consensus 30 ~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~ 86 (222)
T cd07018 30 SLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYAD 86 (222)
T ss_pred cHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 4578999999998774 8888888876643222334455444444446777776654
No 58
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=28.91 E-value=1.2e+02 Score=25.38 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHCCCcEEEec-cCCCCCCcchhhHHHHHHHHHHhCCcEEEEcCC
Q 046331 181 SEMLLMMHDATTVGVDLITIS-IGHAHALNFSDESISIGSFHAMKNGILTSNSAG 234 (249)
Q Consensus 181 ~~i~~ai~~Ai~~gvdVI~~S-lG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAG 234 (249)
..-.+.++.|++.++|++=++ ||..+.. -.-+...+..|+.+||.|+++-.
T Consensus 80 a~A~~~l~~al~~~~DLlivNkFGk~Ea~---G~Glr~~i~~A~~~giPVLt~V~ 131 (159)
T PF10649_consen 80 AEASAALRRALAEGADLLIVNKFGKQEAE---GRGLRDEIAAALAAGIPVLTAVP 131 (159)
T ss_pred HHHHHHHHHHHhcCCCEEEEcccHHhhhc---CCCHHHHHHHHHHCCCCEEEEEC
Confidence 566777889999999988776 6654311 11122233568999999998753
No 59
>PRK10949 protease 4; Provisional
Probab=28.76 E-value=1.6e+02 Score=29.92 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCC-CcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcCCCCC
Q 046331 181 SEMLLMMHDATTVG-VDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSAGNRG 237 (249)
Q Consensus 181 ~~i~~ai~~Ai~~g-vdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAGN~G 237 (249)
..+++.|+.|.+|. +.-|-+-+-++.....-.+.|..++.++.++|..||++.|+-.
T Consensus 350 ~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~a 407 (618)
T PRK10949 350 DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMA 407 (618)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 56889999998764 6666666655543444557777777777778999999887664
No 60
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.99 E-value=1.8e+02 Score=24.49 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHCCCcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEE
Q 046331 181 SEMLLMMHDATTVGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSN 231 (249)
Q Consensus 181 ~~i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~ 231 (249)
...+..++.+++.|+|.|-++.-.... ..+. +..+.++||.||.
T Consensus 42 ~~q~~~i~~~i~~~~d~Iiv~~~~~~~---~~~~----l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 42 EEQIEQIEQAISQGVDGIIVSPVDPDS---LAPF----LEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHTTESEEEEESSSTTT---THHH----HHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCHHH---HHHH----HHHHhhcCceEEE
Confidence 356788999999999988776555421 2233 3468899998887
No 61
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=23.31 E-value=3.8e+02 Score=22.76 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=27.3
Q ss_pred HHHHHCCCcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcC
Q 046331 188 HDATTVGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSA 233 (249)
Q Consensus 188 ~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aA 233 (249)
......|+|+|-.+........ .........+|.++|+.||.+.
T Consensus 152 ~~~~~~gadii~~p~~~~~~~~--~~~~~~~~~rA~en~~~vv~an 195 (254)
T cd07576 152 RALALAGADLVLVPTALMEPYG--FVARTLVPARAFENQIFVAYAN 195 (254)
T ss_pred HHHHHCCCCEEEECCccCCCcc--hhhhhhhHHHHHhCCCEEEEEc
Confidence 3456789999987554332211 1122334567999999988873
No 62
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=23.29 E-value=3.1e+02 Score=23.42 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=27.7
Q ss_pred HHHHHCCCcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcC
Q 046331 188 HDATTVGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSA 233 (249)
Q Consensus 188 ~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aA 233 (249)
......|+++|-..-...........-......+|.+.|+.||.+.
T Consensus 157 ~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n 202 (255)
T cd07581 157 RALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAG 202 (255)
T ss_pred HHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEc
Confidence 4456789998876543321111122223445677899999998875
No 63
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=23.20 E-value=2.6e+02 Score=26.26 Aligned_cols=44 Identities=27% Similarity=0.243 Sum_probs=20.9
Q ss_pred HHHHHHHHHCCCcEEEeccC---CCCC-CcchhhHHHHHHHHHHhCCc
Q 046331 184 LLMMHDATTVGVDLITISIG---HAHA-LNFSDESISIGSFHAMKNGI 227 (249)
Q Consensus 184 ~~ai~~Ai~~gvdVI~~SlG---~~~~-~~~~~~~i~~~~~~a~~~Gi 227 (249)
+..+..|++.|+|.|-+++- .-.. ..+..+.+..++..|.++|.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk 63 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGK 63 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCC
Confidence 34455556666666655532 1111 11223335555555666665
No 64
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=22.89 E-value=2.2e+02 Score=26.10 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEc
Q 046331 183 MLLMMHDATTVGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNS 232 (249)
Q Consensus 183 i~~ai~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~a 232 (249)
-+..|+.++..++|.|-++- . ..+.+...+..|.++||.||.-
T Consensus 69 q~~~i~~li~~~vdgIiv~~--~-----d~~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 69 QVQLINNFVNQGYNAIIVSA--V-----SPDGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHHcCCCEEEEec--C-----CHHHHHHHHHHHHHCCCeEEEe
Confidence 35778899999999998851 1 1123334456788999988874
No 65
>PRK10481 hypothetical protein; Provisional
Probab=22.79 E-value=72 Score=28.10 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=19.2
Q ss_pred ccCCcceeecchhHHHHHHHHHHH
Q 046331 90 MSSSQLAFISPYRHQVKQFQEWFK 113 (249)
Q Consensus 90 ~~~~~igvItPy~~Qv~~l~~~~~ 113 (249)
....++|||+||..|+....++|.
T Consensus 127 ~~g~riGVitP~~~qi~~~~~kw~ 150 (224)
T PRK10481 127 VGGHQVGVIVPVEEQLAQQAQKWQ 150 (224)
T ss_pred cCCCeEEEEEeCHHHHHHHHHHHH
Confidence 355799999999999887776665
No 66
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=21.42 E-value=3e+02 Score=26.92 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCcEEEeccCCCCCC--cc-------hhhHHHHHHHHHHhCCcEEEEcCCCC
Q 046331 184 LLMMHDATTVGVDLITISIGHAHAL--NF-------SDESISIGSFHAMKNGILTSNSAGNR 236 (249)
Q Consensus 184 ~~ai~~Ai~~gvdVI~~SlG~~~~~--~~-------~~~~i~~~~~~a~~~Gi~Vv~aAGN~ 236 (249)
..+..++++.|+|.|.++.|+++.. .. ...++..++..+.+.|+.|++.-|=.
T Consensus 277 ~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~ 338 (475)
T TIGR01303 277 AEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVR 338 (475)
T ss_pred HHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCC
Confidence 3456677889999999999976321 11 12334444445567799998877644
No 67
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=21.40 E-value=2.2e+02 Score=25.37 Aligned_cols=51 Identities=20% Similarity=0.016 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCCcEEEeccCCCCC-------C--cchhhHHHHHHHHHHhCCcEEEEcCC
Q 046331 184 LLMMHDATTVGVDLITISIGHAHA-------L--NFSDESISIGSFHAMKNGILTSNSAG 234 (249)
Q Consensus 184 ~~ai~~Ai~~gvdVI~~SlG~~~~-------~--~~~~~~i~~~~~~a~~~Gi~Vv~aAG 234 (249)
.+.++.|.+.|++.|.+.+..+.. . ....+.+...+.+|.++|+.|.+..-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 345888888999999998875521 0 11123334455677888988877653
No 68
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=20.49 E-value=5.1e+02 Score=22.14 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=27.7
Q ss_pred HHHHHHCCCcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcC
Q 046331 187 MHDATTVGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSA 233 (249)
Q Consensus 187 i~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aA 233 (249)
...+...|+|+|-.+-........ .........+|.+.++.|+.+.
T Consensus 162 ~r~~~~~gadli~~p~~~~~~~~~-~~~~~~~~~rA~e~~~~vv~~n 207 (265)
T cd07572 162 ARALARQGADILTVPAAFTMTTGP-AHWELLLRARAIENQCYVVAAA 207 (265)
T ss_pred HHHHHHCCCCEEEECCCCCCCcch-HHHHHHHHHHHHhcCCEEEEEc
Confidence 445667899999776443321111 1111223567899999998884
No 69
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=20.19 E-value=2.4e+02 Score=26.47 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=26.3
Q ss_pred HHHHHHCCCc-EEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcC
Q 046331 187 MHDATTVGVD-LITISIGHAHALNFSDESISIGSFHAMKNGILTSNSA 233 (249)
Q Consensus 187 i~~Ai~~gvd-VI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aA 233 (249)
++.+++.|++ +|--++|.+.-.+ .+..++.++.++||.||.+.
T Consensus 255 l~~~~~~g~~GlVl~g~G~Gn~p~----~~~~al~~a~~~GipVV~~S 298 (349)
T TIGR00520 255 VNAVLDAGAKGIVLAGVGNGSLSA----AGLKVNETAAKLGVPIVRSS 298 (349)
T ss_pred HHHHHhCCCCEEEEEeECCCCCCH----HHHHHHHHHHHCCCEEEEEc
Confidence 4455666654 3344666553222 24445567899999999874
No 70
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=20.07 E-value=1.7e+02 Score=27.98 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCcEEEeccCCCCCCcchhhHHHHHHHHHHhCCcEEEEcCCC
Q 046331 184 LLMMHDATTVGVDLITISIGHAHALNFSDESISIGSFHAMKNGILTSNSAGN 235 (249)
Q Consensus 184 ~~ai~~Ai~~gvdVI~~SlG~~~~~~~~~~~i~~~~~~a~~~Gi~Vv~aAGN 235 (249)
+..++.|++.|++++-+|...... +..+ ..|.++|+.++..+|=
T Consensus 82 ~~i~ka~i~~gv~yvDts~~~~~~--~~~~------~~a~~Agit~v~~~G~ 125 (389)
T COG1748 82 LTILKACIKTGVDYVDTSYYEEPP--WKLD------EEAKKAGITAVLGCGF 125 (389)
T ss_pred HHHHHHHHHhCCCEEEcccCCchh--hhhh------HHHHHcCeEEEcccCc
Confidence 466778999999999999887631 2222 2377899988888873
Done!