BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046335
(613 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 159/479 (33%), Positives = 230/479 (48%), Gaps = 82/479 (17%)
Query: 101 NYTLALPLSLMFFDAQRCTSLFLHASNIYNNVSWRGNSCLQDGQKTFINNLVGGYYDAGD 160
+Y L SL+F++AQR L V+WR +S L D Q +L GGY+DAGD
Sbjct: 4 DYKQVLRDSLLFYEAQRSGRLPAD-----QKVTWRKDSALND-QGDQGQDLTGGYFDAGD 57
Query: 161 AIKLSFPTSFAMTMLSWSALEYSTKYEANGELDHVKDIIKWGTDYLLKTFNSSADSINMI 220
+K FP ++ T+L+W +++ Y + G LD + +KW TDY +K S N
Sbjct: 58 FVKFGFPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQ----NEF 113
Query: 221 ASQVGGGDPSSKDTDPHDLNCWMRPEDIDNNDPRPVYKCYNC---PXXXXXXXXXXXXXS 277
QVG GD D W RPED+ RP YK S
Sbjct: 114 YGQVGQGDA--------DHAFWGRPEDM--TMARPAYKIDTSRPGSDLAGETAAALAAAS 163
Query: 278 IVFKD-NQDYSIKLVHGAKILFQFATKRQGGDYAGKPDAPSVYYNSTGFWDEFVWAGAWL 336
IVF++ + YS L+ A+ LF FA + G Y+ +Y S + DE VWA AWL
Sbjct: 164 IVFRNVDGTYSNNLLTHARQLFDFANNYR-GKYSDSITDARNFYASADYRDELVWAAAWL 222
Query: 337 YCATGDSSYLQLVTTPALAKHADAF----WGGPHHSVLSWNSKYVGAQLLLTRMRLFLRY 392
Y AT D++YL T +L D F WGG L+W+SK G Q+LL ++
Sbjct: 223 YRATNDNTYLN--TAESL---YDEFGLQNWGGG----LNWDSKVSGVQVLLAKL------ 267
Query: 393 GYPYEEMLRTFQNQVEETVCSYLPNFL--SFKRTNGGLIQLNHARPQPLQYIVNAVFFTT 450
T + ++TV SY+ N+L + ++T GL+ ++ L++ NA F
Sbjct: 268 ---------TNKQAYKDTVQSYV-NYLINNQQKTPKGLLYIDMW--GTLRHAANAAFIM- 314
Query: 451 LYMDYLEASEIPGCFCGPQFYTRTAFRSFAKTQMDYILGKNPQNMSYIVGFGTRFPQHVL 510
LEA+E+ + +++R FA+TQ+DY LG + S++ GFG+ P
Sbjct: 315 -----LEAAELG--------LSASSYRQFAQTQIDYALGDGGR--SFVCGFGSNPPTRPH 359
Query: 511 HRGASIPRNNIKYNCQGGRKWRDSAKPNPN--VIIGAMVGGPDQNDGFLDSRSNYNYTE 567
HR +S P C W P+PN V+ GA+VGGPDQND ++D RS+Y + E
Sbjct: 360 HRSSSCPP--APATCD----WNTFNSPDPNYHVLSGALVGGPDQNDNYVDDRSDYVHNE 412
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 150/478 (31%), Positives = 215/478 (44%), Gaps = 77/478 (16%)
Query: 101 NYTLALPLSLMFFDAQRCTSLFLHASNIYNNVSWRGNSCLQDGQKTFINNLVGGYYDAGD 160
NY AL S+ F++AQR L + N VSWRG+S L DG ++ L GG+YDAGD
Sbjct: 5 NYAEALQKSMFFYEAQRSGKLPEN-----NRVSWRGDSGLNDGADVGLD-LTGGWYDAGD 58
Query: 161 AIKLSFPTSFAMTMLSWSALEYSTKYEANGELDHVKDIIKWGTDYLLKTFNSSADSINMI 220
+K FP +F TML+W A+E Y +G++ ++KD ++W DY +K S N++
Sbjct: 59 HVKFGFPMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSP----NVL 114
Query: 221 ASQVGGGDPSSKDTDPHDLNCWMRPEDIDNNDPRPVYKC-YNCPXXXX--XXXXXXXXXS 277
QVG GD K W P ++ + RP +K +CP S
Sbjct: 115 YVQVGDGDADHK---------WWGPAEVMPME-RPSFKVDPSCPGSDVAAETAAAMAASS 164
Query: 278 IVFKDNQD-YSIKLVHGAKILFQFATKRQGGDYAGKPDAPSVYYNSTGFWDEFVWAGAWL 336
IVF D+ Y+ LV AK L+ FA +G Y+ A + Y + +G+ DE VW WL
Sbjct: 165 IVFADDDPAYAATLVQHAKQLYTFADTYRGV-YSDCVPAGAFYNSWSGYQDELVWGAYWL 223
Query: 337 YCATGDSSYLQLVTTPALAKHADAFWGGPHHS-------VLSWNSKYVGAQLLLTRMRLF 389
Y ATGD SYL A A++ F + ++W+ K G +LL +
Sbjct: 224 YKATGDDSYL------AKAEYEYDFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKETGK 277
Query: 390 LRYGYPYEEMLRTFQNQVEETVCSYLPNFLSFKRTNGGLIQLNHARPQPLQYIVNAVFFT 449
+Y L + V Y P ++ T G L+Y N F
Sbjct: 278 QKYIDDANRWLDYWTVGVNGQRVPYSPGGMAVLDTWGA-----------LRYAANTAFVA 326
Query: 450 TLYMDYLEASEIPGCFCGPQFYTRTAFRSFAKTQMDYILGKNPQNMSYIVGFGTRFPQHV 509
+Y ++ + + FA Q++Y LG NP+N SY+VGFG P++
Sbjct: 327 LVYAKVIDDP-----------VRKQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNP 375
Query: 510 LHRGASIPRNNIKYNCQGGRKWRDS-AKP--NPNVIIGAMVGGPDQ-NDGFLDSRSNY 563
HR A W DS A P N +V+ GA+VGGP ND + D R +Y
Sbjct: 376 HHRTAH-------------GSWTDSIASPAENRHVLYGALVGGPGSPNDAYTDDRQDY 420
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/487 (29%), Positives = 213/487 (43%), Gaps = 76/487 (15%)
Query: 95 PIPGPDNYTLALPLSLMFFDAQRCTSLFLHASNIYNNVSWRGNSCLQDGQKTFINNLVGG 154
P G NY AL ++ F++ QR L +S + ++WRG+S L DG+ I+ L GG
Sbjct: 19 PATGAFNYGEALQKAIFFYECQRSGKL--DSSTL--RLNWRGDSGLDDGKDAGID-LTGG 73
Query: 155 YYDAGDAIKLSFPTSFAMTMLSWSALEYSTKYEANGELDHVKDIIKWGTDYLLKTFNSSA 214
+YDAGD +K + P S++ ML W+ EY ++ +G+ +H+ + IKW DY +K
Sbjct: 74 WYDAGDHVKFNLPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPEK- 132
Query: 215 DSINMIASQVGGGDPSSKDTDPHDLNCWMRPEDIDNNDPRPVYKCYNC---PXXXXXXXX 271
++ QVG G H + W P ++ + RP YK
Sbjct: 133 ---DVYYYQVGDG---------HADHAWWGPAEVMPME-RPSYKVDRSSPGSTVVAETSA 179
Query: 272 XXXXXSIVFKD-NQDYSIKLVHGAKILFQFATKRQGGDYAGKPDAPSVYYNSTGFWDEFV 330
SI+FK + +YS + + AK LF+FA + D G A Y + +GF+DE
Sbjct: 180 ALAIASIIFKKVDGEYSKECLKHAKELFEFADTTKSDD--GYTAANGFYNSWSGFYDELS 237
Query: 331 WAGAWLYCATGDSSYLQLVTTPALAKHADAFWGGPHHSV------LSWNSKYVGAQLLLT 384
WA WLY AT DSSYL + ++D + P ++ W+ G LLL
Sbjct: 238 WAAVWLYLATNDSSYLDKAES-----YSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLA 292
Query: 385 RMR-LFLRYGYPYEEMLRTFQNQVEETVCSYLPNFLSFKRTNGGLIQLNHARPQPLQYIV 443
R++ +Y E L + +Y P L++ G L+Y
Sbjct: 293 RIKNDNGKYKEAIERHLDWWTTGYNGERITYTPKGLAWLDQWGS-----------LRYAT 341
Query: 444 NAVFFTTLYMDYLEASEIPGCFCGPQFYTRTAFRSFAKTQMDYILGKNPQNMSYIVGFGT 503
F +Y D+ G + +T + FA++Q DY LG + S++VGFG
Sbjct: 342 TTAFLACVYSDWEN---------GDKEKAKT-YLEFARSQADYALGSTGR--SFVVGFGE 389
Query: 504 RFPQHVLHRGASIPRNNIKYNCQGGRKWRDSAKPNP---NVIIGAMVGGPDQNDGFLDSR 560
P+ HR A W DS P +V+ GA+VGGPD D + D
Sbjct: 390 NPPKRPHHRTAH-------------GSWADSQMEPPEHRHVLYGALVGGPDSTDNYTDDI 436
Query: 561 SNYNYTE 567
SNY E
Sbjct: 437 SNYTCNE 443
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 141/484 (29%), Positives = 214/484 (44%), Gaps = 83/484 (17%)
Query: 98 GPDNYTLALPLSLMFFDAQRCTSLFLHASNIYNNVSWRGNSCLQDGQKTFINNLVGGYYD 157
G +Y+ AL S++FFDA +C +N+++ WRG DG ++ L GGY+D
Sbjct: 2 GTHDYSTALKDSIIFFDANKCGPQ-AGENNVFD---WRGACHTTDGSDVGVD-LTGGYHD 56
Query: 158 AGDAIKLSFPTSFAMTMLSWSALEYSTKYEANGELDHVKDIIKWGTDYLLKTFNSSADSI 217
AGD +K P ++ +L WS E+ ++A G + +K+ TDY LK+ +S
Sbjct: 57 AGDHVKFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNS---- 112
Query: 218 NMIASQVGGGDPSSKDTDPHDLNCWMRPEDIDNNDPRPVYKCYNCPXXXXXXXXXXXXXS 277
QVG G+ D W PE+ P +YK +
Sbjct: 113 TTFYYQVGEGNA--------DHTYWGAPEEQTGQRPS-LYKADPSSPASDILSETSAALT 163
Query: 278 IVFKDNQD----YSIKLVHGAKILFQFATKRQGGDYAGKPDAPSVYYNSTGFWDEFVWAG 333
+++ + ++ Y+ K ++ AK L+ QG G + +Y +T F D+ WA
Sbjct: 164 LMYLNYKNIDSAYATKCLNAAKELYAMGKANQG---VGNGQS---FYQATSFGDDLAWAA 217
Query: 334 AWLYCATGDSSYL----QLVT---TPALAKHADAFWGGPHHSVLSWNSKYVGAQLLLTRM 386
WLY AT DS+Y+ Q +T T K D + + W+ YV A L L ++
Sbjct: 218 TWLYTATNDSTYITDAEQFITLGNTMNENKMQDKW-------TMCWDDMYVPAALRLAQI 270
Query: 387 RLFLRYGYPYEEMLRTFQNQVEETVCSYLPNFLSFKRTNGGLIQLNHARPQPLQYIVNAV 446
Y E ++ QV T P L + +N G++ R + +V V
Sbjct: 271 TGKQIYKDAIEFNFNYWKTQVTTT-----PGGLKW-LSNWGVL-----RYAAAESMVMLV 319
Query: 447 FFTTLYMDYLEASEIPGCFCGPQFYTRTAFRSFAKTQMDYILGKNPQNMSYIVGFGTRFP 506
+ C P + AK Q+DYILG NP NMSYI+G+G+ +
Sbjct: 320 Y----------------CKQNPD----QSLLDLAKKQVDYILGDNPANMSYIIGYGSNWC 359
Query: 507 QHVLHRGASIPRNNIKYNCQGGRKWRDSAKPNPNVIIGAMVGGPDQNDGFLDSRSNYNYT 566
H HR A+ Y G D+AKP +++ GA+VGGPDQND FLD + Y YT
Sbjct: 360 IHPHHRAAN------GYTYANG----DNAKPAKHLLTGALVGGPDQNDKFLDDANQYQYT 409
Query: 567 EPTI 570
E +
Sbjct: 410 EVAL 413
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 214/488 (43%), Gaps = 80/488 (16%)
Query: 91 RRHHPIPGPDNYTLALPLSLMFFDAQRCTSLFLHASNIYNNVSWRGNSCLQDGQKTFINN 150
R H G NY AL ++MF++ Q L + + NN WRG+S L+DGQ ++
Sbjct: 17 RGSHMASGSFNYGEALQKAIMFYEFQMSGKL---PNWVRNN--WRGDSALKDGQDNGLD- 70
Query: 151 LVGGYYDAGDAIKLSFPTSFAMTMLSWSALEYSTKYEANGELDHVKDIIKWGTDYLLKTF 210
L GG++DAGD +K + P S+ TMLSW+ EY + +G+L+H+ + I+W DY +K
Sbjct: 71 LTGGWFDAGDHVKFNLPMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCH 130
Query: 211 NSSADSINMIASQVGGGDPSSKDTDPHDLNCWMRPEDIDNNDPRPVYKCYNC---PXXXX 267
S + QVG G SKD + W P ++ + RP +K
Sbjct: 131 PSKY----VYYYQVGDG---SKD------HAWWGPAEVMQME-RPSFKVTQSSPGSTVVA 176
Query: 268 XXXXXXXXXSIVFKD-NQDYSIKLVHGAKILFQFA--TKRQGGDYAGKPDAPSVYYNS-T 323
SIV KD N + + AK L++FA TK G A + YYNS +
Sbjct: 177 ETAASLAAASIVLKDRNPTKAATYLQHAKELYEFAEVTKSDAG-----YTAANGYYNSWS 231
Query: 324 GFWDEFVWAGAWLYCATGDSSYLQLVTT-----PALAKHADAFWGGPHHSVLSWNSKYVG 378
GF+DE WA WLY AT DS+YL + P ++ + H W+ + G
Sbjct: 232 GFYDELSWAAVWLYLATNDSTYLTKAESYVQNWPKISGSNTIDYKWAH----CWDDVHNG 287
Query: 379 AQLLLTRMRLFLRYGYPYEEMLRTFQNQVEETVCSYLPNFLSFKRTNGGLIQLNHARPQP 438
A LLL ++ Y E L + Y P L++ G
Sbjct: 288 AALLLAKITGKDIYKQIIESHLDYWTTGYNGERIKYTPKGLAWLDQWG-----------S 336
Query: 439 LQYIVNAVFFTTLYMDYLEASEIPGCFCGPQFYTRTAFRSFAKTQMDYILGKNPQNMSYI 498
L+Y F +Y D++ GC P + +R F ++Q+DY LG S++
Sbjct: 337 LRYATTTAFLAFVYSDWV------GC---PST-KKEIYRKFGESQIDYALGS--AGRSFV 384
Query: 499 VGFGTRFPQHVLHRGASIPRNNIKYNCQGGRKWRDSAKP---NPNVIIGAMVGGPDQNDG 555
VGFGT P+ HR A W DS + + + GA+VGGP +D
Sbjct: 385 VGFGTNPPKRPHHRTAH-------------SSWADSQSIPSYHRHTLYGALVGGPGSDDS 431
Query: 556 FLDSRSNY 563
+ D SNY
Sbjct: 432 YTDDISNY 439
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 135/504 (26%), Positives = 220/504 (43%), Gaps = 71/504 (14%)
Query: 98 GPDNYTLALPLSLMFFDAQRCTSLFLHASNIYNNVSWRGNSCLQDGQ-----------KT 146
G NY AL S+ F+DA C + S + SWRG+ + D +
Sbjct: 36 GEYNYAKALQYSMFFYDANMCGTGVDENSLL----SWRGDCHVYDARLPLDSQNTNMSDG 91
Query: 147 FIN--------------NLVGGYYDAGDAIKLSFPTSFAMTMLSWSALEYSTKYEANGEL 192
FI+ ++ GG++DAGD +K P ++A + + W E+ ++ A G+
Sbjct: 92 FISSNRSVLDPDGDGKVDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQA 151
Query: 193 DHVKDIIKWGTDYLLK-TFNSSADSINMIASQVGGGDPSSKDTDPHDLNCWMRPEDIDNN 251
H + I+++ DY ++ TF ++ ++ QVG GD D W PE+ D
Sbjct: 152 VHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDGDI--------DHAFWGAPEN-DTM 202
Query: 252 DPRPVYKCYNCPXXX--XXXXXXXXXXSIVFKDNQ-DYSIKLVHGAKILFQFATKRQGGD 308
R + P + FKD Y+ K + AK LF FA K G
Sbjct: 203 FRRGWFITKEKPGTDIISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGV 262
Query: 309 YAGKPDAPSVYYNSTGFWDEFVWAGAWLYCATGDSSYLQLVTTPALAKHADAFWGGPHHS 368
G+ D P YY S+ + D++ WA AWLY AT + YL K+ D + P
Sbjct: 263 VQGE-DGPKGYYGSSKWQDDYCWAAAWLYLATQNEHYLDEAF-----KYYDYY--APPGW 314
Query: 369 VLSWNSKYVGAQLLLTRMR-LFLRYGYPYEEMLRTFQNQVE-ETVCSYLPNFLSFKRTNG 426
+ WN + G +L + L+ + +E+ + N+ + E + + P + +G
Sbjct: 315 IHCWNDVWSGTACILAEINDLYDKDSQNFEDRYKRASNKNQWEQIDFWKPIQDLLDKWSG 374
Query: 427 GLIQLNHARPQPLQYIVNAVFFTTLYMDYLEASEIPGCFCGPQFYTRTAFRSFAKTQMDY 486
G I + P Y+ + + Y A I + T + + ++A++QMDY
Sbjct: 375 GGITVT-----PGGYVFLNQWGSARYN--TAAQLIALVYDKHHGDTPSKYANWARSQMDY 427
Query: 487 ILGKNPQNMSYIVGFGTRFPQHVLHRGASIPRNNIKYNCQGGRKWRDSAKPNPNVIIGAM 546
+LGKNP N Y+VG+ + ++ HR AS G K + + P+ V+ GA+
Sbjct: 428 LLGKNPLNRCYVVGYSSNSVKYPHHRAAS------------GLKDANDSSPHKYVLYGAL 475
Query: 547 VGGPDQNDGFLDSRSNYNYTEPTI 570
VGGPD +D +D ++Y Y E I
Sbjct: 476 VGGPDASDQHVDRTNDYIYNEVAI 499
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 139/480 (28%), Positives = 206/480 (42%), Gaps = 79/480 (16%)
Query: 98 GPDNYTLALPLSLMFFDAQRCTSLFLHASNIYNNVSWRGNSCLQDGQKTFINNLVGGYYD 157
G NY AL S+MF++ QR L + +WR +S ++DG ++ L GG+YD
Sbjct: 2 GTYNYGEALQKSIMFYEFQRSGDLPADKRD-----NWRDDSGMKDGSDVGVD-LTGGWYD 55
Query: 158 AGDAIKLSFPTSFAMTMLSWSALEYSTKYEANGELDHVKDIIKWGTDYLLKTFNSSADSI 217
AGD +K + P S+ ML+WS E Y+ +G+ ++ D IKW DY +K +
Sbjct: 56 AGDHVKFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPG--- 112
Query: 218 NMIASQVGGGDPSSKDTDPHDLNCWMRPEDIDNNDPRPVYKCYNCPXXXXX---XXXXXX 274
+ QVG G KD + W P ++ + RP +K
Sbjct: 113 -VYYYQVGDG---GKD------HSWWGPAEVMQME-RPSFKVDASKPGSAVCASTAASLA 161
Query: 275 XXSIVFKDNQ-DYSIKLVHGAKILFQFATKRQGGDYAGKPDAPSVYYNSTGFWDEFVWAG 333
++VFK + Y+ K + AK LF A K + AG A Y +S+ + D+ WA
Sbjct: 162 SAAVVFKSSDPTYAEKCISHAKNLFDMADKAKSD--AGYTAASGYYSSSSFY-DDLSWAA 218
Query: 334 AWLYCATGDSSYLQLVTTPALAKHADAFWGGPHHSVL-------SWNSKYVGAQLLLTRM 386
WLY AT DS+YL A+ WG + + W+ + GA+LLL ++
Sbjct: 219 VWLYLATNDSTYLD------KAESYVPNWGKEQQTDIIAYKWGQXWDDVHYGAELLLAKL 272
Query: 387 RLFLRYGYPYEEMLRTFQNQVEETVCSYLPNFLSFKRTNGGLIQLNHARPQPLQYIVNAV 446
Y E L + V T SY P L++ L Q R Q + V
Sbjct: 273 TNKQLYKDSIEMNLDFWTTGVNGTRVSYTPKGLAW------LFQWGSLRHATTQAFLAGV 326
Query: 447 FFTTLYMDYLEASEIPGCFCGPQFYTRTAFRSFAKTQMDYILGKNPQNMSYIVGFGTRFP 506
+ +E GC + ++ F K+Q+DY LG + S++VG+G P
Sbjct: 327 Y-----------AEWEGCTPS----KVSVYKDFLKSQIDYALGSTGR--SFVVGYGVNPP 369
Query: 507 QHVLHRGASIPRNNIKYNCQGGRKWRD---SAKPNPNVIIGAMVGGPDQNDGFLDSRSNY 563
QH HR A W D S + + I GA+VGGPD DG+ D +NY
Sbjct: 370 QHPHHRTAH-------------GSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNY 416
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 139/480 (28%), Positives = 206/480 (42%), Gaps = 79/480 (16%)
Query: 98 GPDNYTLALPLSLMFFDAQRCTSLFLHASNIYNNVSWRGNSCLQDGQKTFINNLVGGYYD 157
G NY AL S+MF++ QR L + +WR +S ++DG ++ L GG+YD
Sbjct: 2 GTYNYGEALQKSIMFYEFQRSGDLPADKRD-----NWRDDSGMKDGSDVGVD-LTGGWYD 55
Query: 158 AGDAIKLSFPTSFAMTMLSWSALEYSTKYEANGELDHVKDIIKWGTDYLLKTFNSSADSI 217
AGD +K + P S+ ML+WS E Y+ +G+ ++ D IKW DY +K +
Sbjct: 56 AGDHVKFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPG--- 112
Query: 218 NMIASQVGGGDPSSKDTDPHDLNCWMRPEDIDNNDPRPVYKCYNCPXXXXX---XXXXXX 274
+ QVG G KD + W P ++ + RP +K
Sbjct: 113 -VYYYQVGDG---GKD------HSWWGPAEVMQME-RPSFKVDASKPGSAVCASTAASLA 161
Query: 275 XXSIVFKDNQ-DYSIKLVHGAKILFQFATKRQGGDYAGKPDAPSVYYNSTGFWDEFVWAG 333
++VFK + Y+ K + AK LF A K + AG A Y +S+ + D+ WA
Sbjct: 162 SAAVVFKSSDPTYAEKCISHAKNLFDMADKAKSD--AGYTAASGYYSSSSFY-DDLSWAA 218
Query: 334 AWLYCATGDSSYLQLVTTPALAKHADAFWGGPHHSVL-------SWNSKYVGAQLLLTRM 386
WLY AT DS+YL A+ WG + + W+ + GA+LLL ++
Sbjct: 219 VWLYLATNDSTYLD------KAESYVPNWGKEQQTDIIAYKWGQCWDDVHYGAELLLAKL 272
Query: 387 RLFLRYGYPYEEMLRTFQNQVEETVCSYLPNFLSFKRTNGGLIQLNHARPQPLQYIVNAV 446
Y E L + V T SY P L++ L Q R Q + V
Sbjct: 273 TNKQLYKDSIEMNLDFWTTGVNGTRVSYTPKGLAW------LFQWGSLRHATTQAFLAGV 326
Query: 447 FFTTLYMDYLEASEIPGCFCGPQFYTRTAFRSFAKTQMDYILGKNPQNMSYIVGFGTRFP 506
+ +E GC + ++ F K+Q+DY LG + S++VG+G P
Sbjct: 327 Y-----------AEWEGCTPS----KVSVYKDFLKSQIDYALGSTGR--SFVVGYGVNPP 369
Query: 507 QHVLHRGASIPRNNIKYNCQGGRKWRD---SAKPNPNVIIGAMVGGPDQNDGFLDSRSNY 563
QH HR A W D S + + I GA+VGGPD DG+ D +NY
Sbjct: 370 QHPHHRTAH-------------GSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNY 416
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 475 AFRSFAKTQMDYILGKNPQNMSYIVGFGTRFPQHVLHRGASIPRNNIKYNCQGGRKWRDS 534
A + A+ DY+ G NP Y+ GFG R +H HR + +++ + G
Sbjct: 426 AAHTVAQRAADYLFGANPLGQCYVTGFGQRPVRHPHHRPSVA--DDVDHPVPG----MVV 479
Query: 535 AKPNPNV---IIGAMVGGPDQNDGFLDSRSNYNYTEPTI 570
PN ++ I A + G + ++D + +Y+ E +
Sbjct: 480 GGPNRHLQDEIARAQLAGRPAMEAYIDHQDSYSTNEVAV 518
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 286 YSIKLVHGAKILFQFATKRQGGDYAGKPDAPSVYYNSTGFWDEFVWAGAWLYCATGDSSY 345
Y+ K ++ AK+ ++F +A + + Y + D+ +WA A ++ GD Y
Sbjct: 310 YAEKCINAAKVSYEFLKNNPANVFANQSGFSTGEYATVSDADDRLWAAAEMWETLGDEEY 369
Query: 346 LQ 347
L+
Sbjct: 370 LR 371
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 13/58 (22%)
Query: 189 NGELDHVKDIIKWGTD-----------YLLKTFNSSADSINMIASQVGGGDPSSKDTD 235
NG D VKD+++ G D L N + + ++ SQ G DP++KD+D
Sbjct: 14 NGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ--GADPNAKDSD 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,800,866
Number of Sequences: 62578
Number of extensions: 785838
Number of successful extensions: 1175
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 16
length of query: 613
length of database: 14,973,337
effective HSP length: 105
effective length of query: 508
effective length of database: 8,402,647
effective search space: 4268544676
effective search space used: 4268544676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)