Query 046336
Match_columns 167
No_of_seqs 181 out of 271
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 11:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 1E-57 2.3E-62 393.5 17.1 159 1-167 122-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 4.6E-45 1E-49 315.0 17.6 157 2-167 150-306 (308)
3 PRK12872 ubiA prenyltransferas 99.4 4.2E-12 9E-17 106.5 13.5 92 5-103 138-229 (285)
4 COG0382 UbiA 4-hydroxybenzoate 99.4 1.2E-11 2.7E-16 105.0 15.8 111 33-146 165-275 (289)
5 PRK13591 ubiA prenyltransferas 99.3 4E-12 8.7E-17 111.7 8.4 88 47-134 191-278 (307)
6 PLN02809 4-hydroxybenzoate non 99.3 5.7E-11 1.2E-15 102.5 14.5 125 9-140 143-267 (289)
7 PRK13105 ubiA prenyltransferas 99.3 8.6E-11 1.9E-15 101.6 12.6 68 32-99 157-224 (282)
8 TIGR01475 ubiA_other putative 99.2 6.2E-10 1.4E-14 94.3 14.9 93 44-139 167-259 (282)
9 TIGR01476 chlor_syn_BchG bacte 99.2 8.5E-10 1.9E-14 93.4 14.7 68 33-100 159-226 (283)
10 PRK13595 ubiA prenyltransferas 99.2 2E-10 4.4E-15 100.3 10.4 94 43-146 177-270 (292)
11 PRK12895 ubiA prenyltransferas 99.2 1.1E-09 2.3E-14 95.0 14.5 99 39-141 163-262 (286)
12 PRK06080 1,4-dihydroxy-2-napht 99.2 4.1E-10 9E-15 95.4 11.6 70 33-102 166-235 (293)
13 PRK12392 bacteriochlorophyll c 99.1 3.4E-10 7.4E-15 99.6 10.8 71 33-103 178-248 (331)
14 PF01040 UbiA: UbiA prenyltran 99.1 2.3E-09 4.9E-14 86.5 14.3 49 34-82 145-193 (257)
15 PRK12882 ubiA prenyltransferas 99.1 1.4E-09 3.1E-14 91.7 13.1 92 46-139 168-259 (276)
16 PRK12884 ubiA prenyltransferas 99.1 1.4E-09 3E-14 91.4 12.1 66 36-101 156-221 (279)
17 PRK13106 ubiA prenyltransferas 99.1 3.5E-09 7.6E-14 92.1 13.7 102 40-146 182-283 (300)
18 PRK05951 ubiA prenyltransferas 99.1 8E-09 1.7E-13 88.8 15.4 105 38-143 174-278 (296)
19 PLN00012 chlorophyll synthetas 99.0 1.8E-09 4E-14 96.7 11.4 64 33-96 250-313 (375)
20 TIGR02056 ChlG chlorophyll syn 99.0 2.9E-09 6.3E-14 92.0 11.8 66 32-97 180-245 (306)
21 PRK12888 ubiA prenyltransferas 99.0 3.3E-09 7.1E-14 91.2 11.8 109 34-145 158-268 (284)
22 PRK12847 ubiA 4-hydroxybenzoat 99.0 1.5E-08 3.2E-13 86.2 15.1 104 33-140 163-266 (285)
23 PRK09573 (S)-2,3-di-O-geranylg 99.0 2.2E-08 4.8E-13 84.8 15.5 56 40-95 159-214 (279)
24 PRK12876 ubiA prenyltransferas 98.9 5.2E-08 1.1E-12 85.4 15.6 115 46-167 183-299 (300)
25 PRK07566 bacteriochlorophyll/c 98.9 9.7E-09 2.1E-13 89.1 10.4 65 32-96 186-250 (314)
26 TIGR01474 ubiA_proteo 4-hydrox 98.9 5.5E-08 1.2E-12 83.0 14.2 104 34-141 159-262 (281)
27 PRK12870 ubiA 4-hydroxybenzoat 98.8 4E-08 8.8E-13 84.5 11.6 109 34-146 165-276 (290)
28 PRK12883 ubiA prenyltransferas 98.8 6.2E-08 1.3E-12 81.8 11.5 43 45-87 164-206 (277)
29 PRK12871 ubiA prenyltransferas 98.8 5.8E-08 1.3E-12 84.2 11.5 96 38-137 178-273 (297)
30 PRK12886 ubiA prenyltransferas 98.7 1.7E-07 3.7E-12 80.8 12.0 89 48-139 175-264 (291)
31 TIGR00751 menA 1,4-dihydroxy-2 98.7 4.5E-07 9.8E-12 78.2 14.2 69 33-101 162-230 (284)
32 TIGR02235 menA_cyano-plnt 1,4- 98.7 2E-07 4.3E-12 80.5 11.6 89 6-101 139-227 (285)
33 PRK12874 ubiA prenyltransferas 98.7 3.1E-07 6.6E-12 79.3 12.7 100 38-140 170-269 (291)
34 PRK12875 ubiA prenyltransferas 98.7 5.8E-08 1.3E-12 83.9 7.5 65 33-99 165-229 (282)
35 PRK07419 1,4-dihydroxy-2-napht 98.6 3.4E-07 7.5E-12 79.9 11.2 70 32-101 171-240 (304)
36 PRK12878 ubiA 4-hydroxybenzoat 98.6 5.7E-07 1.2E-11 78.5 12.0 95 44-142 201-295 (314)
37 PRK12848 ubiA 4-hydroxybenzoat 98.6 6.3E-07 1.4E-11 76.4 11.7 89 50-142 177-266 (282)
38 PRK13592 ubiA prenyltransferas 98.6 9.1E-08 2E-12 84.3 5.7 54 38-93 178-231 (299)
39 PRK13387 1,4-dihydroxy-2-napht 98.6 2.5E-07 5.4E-12 80.9 8.4 62 40-101 194-255 (317)
40 PLN02922 prenyltransferase 98.5 3.7E-06 8E-11 73.7 13.9 71 32-102 185-255 (315)
41 PRK12873 ubiA prenyltransferas 98.3 1.1E-05 2.4E-10 70.6 13.0 100 43-146 178-280 (294)
42 PRK12869 ubiA protoheme IX far 98.0 0.00011 2.3E-09 62.8 11.2 34 56-89 180-213 (279)
43 TIGR01473 cyoE_ctaB protoheme 97.8 0.00038 8.3E-09 59.1 11.3 89 56-146 179-269 (280)
44 PRK04375 protoheme IX farnesyl 97.6 0.00081 1.8E-08 57.9 10.7 34 54-90 189-222 (296)
45 COG1575 MenA 1,4-dihydroxy-2-n 97.1 0.0051 1.1E-07 54.7 10.7 67 32-98 173-239 (303)
46 PRK13362 protoheme IX farnesyl 96.8 0.022 4.9E-07 49.8 11.3 49 36-84 171-219 (306)
47 KOG4581 Predicted membrane pro 80.0 2.4 5.2E-05 37.8 3.9 53 54-106 248-300 (359)
48 TIGR02056 ChlG chlorophyll syn 76.2 21 0.00046 31.0 8.7 48 41-89 60-110 (306)
49 COG0382 UbiA 4-hydroxybenzoate 74.2 43 0.00093 28.6 9.9 32 46-77 58-90 (289)
50 KOG1381 Para-hydroxybenzoate-p 74.1 7.4 0.00016 35.4 5.3 82 56-141 245-326 (353)
51 PRK12884 ubiA prenyltransferas 71.2 42 0.00092 28.2 9.1 37 48-85 50-89 (279)
52 TIGR01476 chlor_syn_BchG bacte 69.9 19 0.00042 30.5 6.8 37 47-84 50-89 (283)
53 PF01040 UbiA: UbiA prenyltran 60.7 86 0.0019 25.1 9.4 34 46-79 34-68 (257)
54 PRK09573 (S)-2,3-di-O-geranylg 60.2 77 0.0017 26.9 8.7 39 48-87 50-91 (279)
55 PF06645 SPC12: Microsomal sig 59.9 55 0.0012 23.4 6.6 47 76-122 5-51 (76)
56 PRK12872 ubiA prenyltransferas 55.2 1.3E+02 0.0027 25.3 10.1 24 44-67 45-68 (285)
57 PRK13592 ubiA prenyltransferas 52.5 29 0.00063 31.1 5.0 47 21-67 30-78 (299)
58 PRK13591 ubiA prenyltransferas 50.0 70 0.0015 28.7 7.0 42 20-66 48-89 (307)
59 PRK13595 ubiA prenyltransferas 49.1 1.1E+02 0.0024 27.2 8.1 60 30-90 41-104 (292)
60 PRK12882 ubiA prenyltransferas 47.8 1.2E+02 0.0026 25.6 7.8 37 50-87 53-92 (276)
61 PLN00012 chlorophyll synthetas 47.4 1.1E+02 0.0025 27.8 8.1 28 48-76 136-163 (375)
62 PRK12887 ubiA tocopherol phyty 45.4 70 0.0015 28.0 6.2 23 54-77 72-94 (308)
63 PLN02809 4-hydroxybenzoate non 45.3 83 0.0018 27.4 6.6 25 53-77 63-88 (289)
64 PRK12869 ubiA protoheme IX far 44.6 1.4E+02 0.0029 25.6 7.7 38 48-85 49-90 (279)
65 TIGR01475 ubiA_other putative 42.6 60 0.0013 27.6 5.3 37 48-84 49-89 (282)
66 PRK07566 bacteriochlorophyll/c 42.6 71 0.0015 27.9 5.8 41 48-89 78-121 (314)
67 TIGR00751 menA 1,4-dihydroxy-2 40.9 2.4E+02 0.0053 24.5 9.9 51 46-96 39-95 (284)
68 PRK12324 phosphoribose diphosp 40.7 1.3E+02 0.0028 26.5 7.2 42 48-89 59-104 (295)
69 PRK12883 ubiA prenyltransferas 39.6 99 0.0021 26.1 6.1 35 49-84 51-88 (277)
70 TIGR02908 CoxD_Bacillus cytoch 37.2 35 0.00076 26.6 2.7 42 5-50 61-102 (110)
71 TIGR00806 rfc RFC reduced fola 37.1 2.3E+02 0.005 27.4 8.6 71 71-141 85-155 (511)
72 COG2246 Predicted membrane pro 36.4 2.1E+02 0.0045 22.4 8.1 51 4-57 16-69 (139)
73 PRK10581 geranyltranstransfera 35.8 56 0.0012 28.5 4.1 45 46-90 214-269 (299)
74 PRK12392 bacteriochlorophyll c 35.3 3.3E+02 0.0071 24.3 9.9 38 52-90 67-107 (331)
75 PLN02878 homogentisate phytylt 35.0 1E+02 0.0022 27.4 5.6 37 37-77 28-64 (280)
76 PRK12888 ubiA prenyltransferas 34.5 3.1E+02 0.0066 23.7 9.4 16 52-67 56-71 (284)
77 cd00867 Trans_IPPS Trans-Isopr 34.5 1.8E+02 0.0039 23.2 6.6 41 43-83 154-204 (236)
78 PRK13106 ubiA prenyltransferas 32.6 1.9E+02 0.0042 25.3 7.0 16 52-67 66-81 (300)
79 TIGR01473 cyoE_ctaB protoheme 31.6 3.2E+02 0.007 23.1 8.1 38 49-86 49-90 (280)
80 TIGR00886 2A0108 nitrite extru 31.1 2.9E+02 0.0064 22.5 7.4 20 74-93 63-82 (366)
81 PRK10133 L-fucose transporter; 30.5 3.6E+02 0.0079 23.9 8.4 75 72-146 85-163 (438)
82 PRK10581 geranyltranstransfera 28.9 1.7E+02 0.0038 25.5 6.0 49 47-95 69-125 (299)
83 PLN02776 prenyltransferase 27.8 4.7E+02 0.01 23.8 12.7 28 62-89 178-207 (341)
84 TIGR01474 ubiA_proteo 4-hydrox 26.6 2E+02 0.0044 24.6 5.9 37 49-85 54-94 (281)
85 TIGR00899 2A0120 sugar efflux 26.3 3.6E+02 0.0079 22.0 8.6 18 129-146 316-333 (375)
86 TIGR00890 2A0111 Oxalate/Forma 23.8 3.9E+02 0.0084 21.5 7.9 21 74-94 64-84 (377)
87 PRK12847 ubiA 4-hydroxybenzoat 22.9 2.2E+02 0.0048 24.2 5.5 37 49-85 59-99 (285)
88 COG4512 AgrB Membrane protein 22.5 1.3E+02 0.0029 25.7 3.9 66 61-137 17-82 (198)
89 PRK12876 ubiA prenyltransferas 22.5 2.8E+02 0.006 24.7 6.2 16 52-67 64-79 (300)
90 COG2119 Predicted membrane pro 22.3 2.9E+02 0.0064 23.5 5.9 74 61-134 16-94 (190)
91 PRK09705 cynX putative cyanate 21.9 4.5E+02 0.0098 22.5 7.2 44 74-117 70-113 (393)
92 PRK04375 protoheme IX farnesyl 21.6 5.3E+02 0.011 22.2 10.6 33 52-84 61-97 (296)
93 TIGR02332 HpaX 4-hydroxyphenyl 21.3 4.6E+02 0.0099 22.8 7.2 47 71-117 66-112 (412)
94 PRK12895 ubiA prenyltransferas 20.2 3.8E+02 0.0082 23.5 6.4 14 53-66 55-68 (286)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=1e-57 Score=393.46 Aligned_cols=159 Identities=48% Similarity=0.878 Sum_probs=156.7
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhH
Q 046336 1 MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 80 (167)
Q Consensus 1 ~Aa~cI~~vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~ 80 (167)
+|++|+++|||+++|+|+|+|+|++++|+|..+|+++++.++|+++|+.+||++||+||+||||++|++|+|+++|+|++
T Consensus 122 ~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~ 201 (280)
T PLN02878 122 AAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRV 201 (280)
T ss_pred HHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCCCchhHHHHH
Q 046336 81 LPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEY 160 (167)
Q Consensus 81 ~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~sk~si~sFYmfIWk~~~~~~~~LFy~EY 160 (167)
+++|..++.+||++++++|++++..++|++|+.||++++++||+|+++||++||++++|||||||| |||+||
T Consensus 202 ~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiwk--------lfy~ey 273 (280)
T PLN02878 202 FWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIWK--------LFYAEY 273 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHHH--------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HhhhhcC
Q 046336 161 FLIHFLR 167 (167)
Q Consensus 161 ll~P~~r 167 (167)
+++|+.|
T Consensus 274 ~l~p~~~ 280 (280)
T PLN02878 274 FLIPLVR 280 (280)
T ss_pred HHHHhcC
Confidence 9999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=4.6e-45 Score=314.99 Aligned_cols=157 Identities=29% Similarity=0.588 Sum_probs=150.5
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHH
Q 046336 2 APFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVL 81 (167)
Q Consensus 2 Aa~cI~~vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~ 81 (167)
+.+|++.+||+++|+|+|.|++... +.+..+|+++++.++++.+++++++++||+||+||||+.|+||+|+++|+|++.
T Consensus 150 ~~~~i~~~~g~i~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~ 228 (308)
T PRK12887 150 AALCIFTVRGVIVNLGLFLHFQWLL-GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVF 228 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHH
Confidence 4589999999999999999998764 447789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCCCchhHHHHHH
Q 046336 82 PLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYF 161 (167)
Q Consensus 82 ~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~sk~si~sFYmfIWk~~~~~~~~LFy~EYl 161 (167)
+++..++.++|+++++.|+.+...+++.+++.||++++..+|+|++++|++||+||+|||||||| |||+||+
T Consensus 229 ~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~--------l~~~ey~ 300 (308)
T PRK12887 229 KLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK--------LFFLEYL 300 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH--------HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhhcC
Q 046336 162 LIHFLR 167 (167)
Q Consensus 162 l~P~~r 167 (167)
++|+.|
T Consensus 301 ~~~~~~ 306 (308)
T PRK12887 301 LFPIAC 306 (308)
T ss_pred HHHHHH
Confidence 999975
No 3
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.42 E-value=4.2e-12 Score=106.54 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHH
Q 046336 5 TLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLC 84 (167)
Q Consensus 5 cI~~vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~ 84 (167)
++..+.|....++-+.+.+ ..++.+.+....++....+.++++||+||+||||+.|++|+|+++|+|++.+++
T Consensus 138 ~vg~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~ 210 (285)
T PRK12872 138 VVSLLWALSPLILGVYYYQ-------LTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFL 210 (285)
T ss_pred HHHHHHHHHHHHHHHHhcc-------cccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHH
Confidence 3444555555544433311 124566777778888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhch
Q 046336 85 VNLMLIGYGGAIIAGSSSS 103 (167)
Q Consensus 85 ~~ll~~~Y~~aI~~g~~~~ 103 (167)
..+....|+..+.......
T Consensus 211 ~~~~~~~~~~~~~~~~~~~ 229 (285)
T PRK12872 211 LILNLLFLILLILGVYTGL 229 (285)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 9999999988886655443
No 4
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.40 E-value=1.2e-11 Score=104.97 Aligned_cols=111 Identities=18% Similarity=0.297 Sum_probs=93.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 046336 33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTI 112 (167)
Q Consensus 33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~ 112 (167)
.+.+.+++..+..+.+.+.+++||+||+||||+.|++|+|+.+|+|++.+++.... .++.....+|....... ..-.
T Consensus 165 ~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~~ 241 (289)
T COG0382 165 LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLG--LIYL 241 (289)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhch--HHHH
Confidence 67889999999999999999999999999999999999999999999999998777 55666655555544222 5677
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcc
Q 046336 113 IGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWK 146 (167)
Q Consensus 113 ~gH~ila~~lw~ra~~vdl~sk~si~sFYmfIWk 146 (167)
.++...+..+++|...+|.++++....++..-..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (289)
T COG0382 242 LGLLVAALLLLYQILIVDVRDPPACFALFDVNLL 275 (289)
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhH
Confidence 8888999999999999999888888888777665
No 5
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.33 E-value=4e-12 Score=111.68 Aligned_cols=88 Identities=22% Similarity=0.200 Sum_probs=72.8
Q ss_pred HHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 046336 47 FAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRS 126 (167)
Q Consensus 47 Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra 126 (167)
..++++++||++|+|||++.|.+|+|+++|++++.++...+...+|+..++.....--.+...+.+-+-.+-...+|+.+
T Consensus 191 ~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~ 270 (307)
T PRK13591 191 KLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYS 270 (307)
T ss_pred HHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHc
Confidence 33888899999999999999999999999999999999999999999888776665555556666666666777778777
Q ss_pred hhcCCCCh
Q 046336 127 RKVDLDSF 134 (167)
Q Consensus 127 ~~vdl~sk 134 (167)
++.|-+++
T Consensus 271 ~~~~~~~~ 278 (307)
T PRK13591 271 SPFENEPS 278 (307)
T ss_pred CCcccCcH
Confidence 77766655
No 6
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.31 E-value=5.7e-11 Score=102.48 Aligned_cols=125 Identities=18% Similarity=0.115 Sum_probs=90.0
Q ss_pred HHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHH
Q 046336 9 LMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLM 88 (167)
Q Consensus 9 vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll 88 (167)
+.|+..+++...+.. .+.|.+ . +.+...+.....+-+..-+++++.+|+|+||+.|++|+|+++|+|+..+++. +.
T Consensus 143 ~lg~~~~~~~l~g~~-av~g~~-~-~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~ 218 (289)
T PLN02809 143 FLGLTFNWGALLGWA-AVKGSL-D-PAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FG 218 (289)
T ss_pred HHHHHHHHHHHHHHH-HHhCCC-C-hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HH
Confidence 568888888877764 344422 1 1222212222222355677999999999999999999999999998888884 66
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHH
Q 046336 89 LIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSF 140 (167)
Q Consensus 89 ~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~sk~si~sF 140 (167)
..+|+....+|... ..+.... .+|++.+..+++|.+.||++|+++..+.
T Consensus 219 ~~~~~~l~~~g~~~--~~~~~~~-~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 267 (289)
T PLN02809 219 AASIGGLALSGYNA--GLGWPYY-AGLAAAAGHLAWQIQTVDLSSRADCNRK 267 (289)
T ss_pred HHHHHHHHHHHHHh--cCcHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 66788777777654 2334444 4899999999999999999999877554
No 7
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.26 E-value=8.6e-11 Score=101.60 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=62.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046336 32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAG 99 (167)
Q Consensus 32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g 99 (167)
.++++.++....+.+++.+++++||+||+||||+.|.+|+|+++|+|++.+++..+..++|+..+..|
T Consensus 157 ~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 157 PFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888899999999999999999999999999999999999999999999999998888655
No 8
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.20 E-value=6.2e-10 Score=94.31 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 046336 44 MSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVW 123 (167)
Q Consensus 44 ~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw 123 (167)
..+.+..++++||+||+|||++.|++|+|+++|+|++.++...+..+.+...++.|...... ..-..+..+.+..++
T Consensus 167 ~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g---~~y~~~~~~~~~~l~ 243 (282)
T TIGR01475 167 VGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNG---YIALLALILIGLILA 243 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCc---HHHHHHHHHHHHHHH
Confidence 34445677899999999999999999999999999999999888888888887777765432 233346666677788
Q ss_pred HHHhhcCCCChhhHHH
Q 046336 124 LRSRKVDLDSFESQFS 139 (167)
Q Consensus 124 ~ra~~vdl~sk~si~s 139 (167)
++.+.+|.+++++..+
T Consensus 244 ~~~~~~~~~~~~~~~~ 259 (282)
T TIGR01475 244 YEHYIVDPGDQSKIQR 259 (282)
T ss_pred HHHHHcCCCCHHHHHH
Confidence 8888999988876654
No 9
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.18 E-value=8.5e-10 Score=93.37 Aligned_cols=68 Identities=24% Similarity=0.246 Sum_probs=57.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHh
Q 046336 33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGS 100 (167)
Q Consensus 33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~ 100 (167)
++.+.++...-+++++..++.+||++|+||||+.|.+|+|+++|+|++.+++..++.+.|...+....
T Consensus 159 ~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~ 226 (283)
T TIGR01476 159 LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLL 226 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666777889999999999999999999999999999999999999999998877664333
No 10
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.16 E-value=2e-10 Score=100.31 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 046336 43 IMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMV 122 (167)
Q Consensus 43 F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~l 122 (167)
...+++.+++++||+||+||||+.|+||+|+++|+|++.++|..+..++=..... ...+.. +.....-.+.+.-+
T Consensus 177 a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~--~~~~~~---~~~~~~~~~~~~~~ 251 (292)
T PRK13595 177 ALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWP--VSRLTA---LALWLICGGMALAL 251 (292)
T ss_pred HHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHH--hcchHH---HHHHHHHHHHHHHH
Confidence 3356779999999999999999999999999999999999997655543332221 112221 11222223333334
Q ss_pred HHHHhhcCCCChhhHHHHHHHhcc
Q 046336 123 WLRSRKVDLDSFESQFSFYMYLWK 146 (167)
Q Consensus 123 w~ra~~vdl~sk~si~sFYmfIWk 146 (167)
| -|.+..++=..+=.|+|-
T Consensus 252 ~-----~~~~~~~~~~~~~~~~~~ 270 (292)
T PRK13595 252 W-----RRPTPETAHRLYPLSIVT 270 (292)
T ss_pred h-----cCCCHHHHhccchHHHHH
Confidence 4 455555555556566774
No 11
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.16 E-value=1.1e-09 Score=94.96 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 046336 39 FTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSIL 118 (167)
Q Consensus 39 f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~il 118 (167)
.+-....+-+.+.++++|.+|+|+|++.|++|+|+++|+|+..+++..+...+-...++.|.... + ..-..|=.+.
T Consensus 163 ~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---~-~~y~~~~~~~ 238 (286)
T PRK12895 163 IIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---T-LWYLAALIII 238 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---h-HHHHHHHHHH
Confidence 34444555667788999999999999999999999999999988876666666555556665442 2 3333566677
Q ss_pred HHHHHHHHhhcCCCChhhH-HHHH
Q 046336 119 AFMVWLRSRKVDLDSFESQ-FSFY 141 (167)
Q Consensus 119 a~~lw~ra~~vdl~sk~si-~sFY 141 (167)
+..+.+|.+.+|.+|.++. ..|+
T Consensus 239 ~~~l~~q~~~~~~~~~~~~~~~~F 262 (286)
T PRK12895 239 YTLVIYQHLIIDPRNPINKRMSFF 262 (286)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7888889999999988877 5543
No 12
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.16 E-value=4.1e-10 Score=95.36 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=64.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 046336 33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSS 102 (167)
Q Consensus 33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~ 102 (167)
++.+.++....+.+++..+.+.||++|+||||+.|++|+|+++|+|++.++...+..++|+..+......
T Consensus 166 ~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~ 235 (293)
T PRK06080 166 VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG 235 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888999999999999999999999999999999999999999999999999999888776654
No 13
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.14 E-value=3.4e-10 Score=99.64 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=59.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhch
Q 046336 33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSS 103 (167)
Q Consensus 33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~ 103 (167)
++.+.+...++..+.+.+++++||+||+|||++.|+||+|+++|+|++++++..++.+..+..+..|....
T Consensus 178 ~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~ 248 (331)
T PRK12392 178 IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWG 248 (331)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666777788889999999999999999999999999999999999998777677776666666554
No 14
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.13 E-value=2.3e-09 Score=86.51 Aligned_cols=49 Identities=29% Similarity=0.438 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHH
Q 046336 34 TRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLP 82 (167)
Q Consensus 34 ~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~ 82 (167)
+.+.+....+...+.+.+...+|++|+|||++.|.+|+|+++|+|++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 145 PPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 6777777788788999999999999999999999999999999999998
No 15
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.11 E-value=1.4e-09 Score=91.68 Aligned_cols=92 Identities=20% Similarity=0.266 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 046336 46 IFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLR 125 (167)
Q Consensus 46 ~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~r 125 (167)
+-.+.++++||+||+|||++.|++|+|+++|+|++.+++.......-..... +.. ....+....+..=...+..++..
T Consensus 168 l~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~-~~~-~~~~~~~y~~~~~~~~~~~l~~~ 245 (276)
T PRK12882 168 LATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL-PYL-LSTFGLWYLVLVAPADLVMLAAA 245 (276)
T ss_pred HHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHH-HHH-HHHhhHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999999877665544433322 111 01112222222222223334444
Q ss_pred HhhcCCCChhhHHH
Q 046336 126 SRKVDLDSFESQFS 139 (167)
Q Consensus 126 a~~vdl~sk~si~s 139 (167)
.+.+|.+++++..+
T Consensus 246 ~~~~~~~~~~~~~~ 259 (276)
T PRK12882 246 YRSLKKTDPTASQK 259 (276)
T ss_pred HHHHcCCCHHHHHH
Confidence 55666666654443
No 16
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.09 E-value=1.4e-09 Score=91.42 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 046336 36 SFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSS 101 (167)
Q Consensus 36 ~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~ 101 (167)
+.+....++.+.+...++.||++|+|||++.|++|+|+++|+|++.+++..+....++..++.+..
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (279)
T PRK12884 156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLF 221 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556667778899999999999999999999999999999999988888887766554443
No 17
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.07 E-value=3.5e-09 Score=92.09 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 046336 40 TTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILA 119 (167)
Q Consensus 40 ~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila 119 (167)
+.....+.+.+.+++||.||+|||++.|++|+|+++| |++..++..+...+-....+.|...... .... .+=.+.+
T Consensus 182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg--~~y~-~~~~~~~ 257 (300)
T PRK13106 182 FVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLG--PIAI-AATILHG 257 (300)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHH-HHHHHHH
Confidence 3334556677899999999999999999999999999 8888888776666666666666544321 1111 2333555
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHhcc
Q 046336 120 FMVWLRSRKVDLDSFESQFSFYMYLWK 146 (167)
Q Consensus 120 ~~lw~ra~~vdl~sk~si~sFYmfIWk 146 (167)
..+.++.+.+|.+ ++--..|.+..|-
T Consensus 258 ~~l~~~~~~~~~~-~~~~~~F~~n~~i 283 (300)
T PRK13106 258 LIMAYAYYLASKK-GDFGRAFYYNIYS 283 (300)
T ss_pred HHHHHHHHHhCCc-hHHHHHHHHccHH
Confidence 6666778888877 5566777666654
No 18
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.06 E-value=8e-09 Score=88.81 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 046336 38 IFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSI 117 (167)
Q Consensus 38 ~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~i 117 (167)
+....-..+.+..+-..++++|+|+||+.|.+|+|+++|+|++ ++-..+...+|+..+.........+......+++..
T Consensus 174 ~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~ 252 (296)
T PRK05951 174 LLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLV 252 (296)
T ss_pred HHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3333344455566678999999999999999999999999999 655566777888777666554333334556667766
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHH
Q 046336 118 LAFMVWLRSRKVDLDSFESQFSFYMY 143 (167)
Q Consensus 118 la~~lw~ra~~vdl~sk~si~sFYmf 143 (167)
....+.++.++.|.++++...+.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 253 AYALCLWQLRKFPPDPDEATVQLFML 278 (296)
T ss_pred HHHHHHHHHhhCcccccHHHHHHHHH
Confidence 66667777777787777766666654
No 19
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.04 E-value=1.8e-09 Score=96.68 Aligned_cols=64 Identities=28% Similarity=0.418 Sum_probs=54.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHH
Q 046336 33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAI 96 (167)
Q Consensus 33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI 96 (167)
++.+.+....++.+.+.+++++||++|+|||++.|++|+|+++|+|++.+++..++.+.+...+
T Consensus 250 ~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~ 313 (375)
T PLN00012 250 LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA 313 (375)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888899999999999999999999999999999999999999876776655433
No 20
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.03 E-value=2.9e-09 Score=92.00 Aligned_cols=66 Identities=30% Similarity=0.383 Sum_probs=56.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHH
Q 046336 32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAII 97 (167)
Q Consensus 32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~ 97 (167)
.++...+.....+.+.+.+++++||++|+|||++.|.+|+|+++|+|++.+++..++...|...+.
T Consensus 180 ~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~ 245 (306)
T TIGR02056 180 ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAA 245 (306)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777778999999999999999999999999999999999999999888877765443
No 21
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.03 E-value=3.3e-09 Score=91.19 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 046336 34 TRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTII 113 (167)
Q Consensus 34 ~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~ 113 (167)
+.+.++...-+.+.+...++++|++|.|+|++.|++|+|+++|+|++.+++..+..+.++...+.|......+--. .
T Consensus 158 ~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~---~ 234 (284)
T PRK12888 158 SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW---I 234 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---H
Confidence 3344444445556677788999999999999999999999999999998877776677666666666543322222 2
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHH-HHH-HHhc
Q 046336 114 GHSILAFMVWLRSRKVDLDSFESQF-SFY-MYLW 145 (167)
Q Consensus 114 gH~ila~~lw~ra~~vdl~sk~si~-sFY-mfIW 145 (167)
+=.+.+..+.+|.+.+|.+|.+... .|+ +.-|
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~ 268 (284)
T PRK12888 235 GLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGF 268 (284)
T ss_pred HHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhH
Confidence 3346666777888899999877664 644 4443
No 22
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.01 E-value=1.5e-08 Score=86.21 Aligned_cols=104 Identities=12% Similarity=0.059 Sum_probs=71.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 046336 33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTI 112 (167)
Q Consensus 33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~ 112 (167)
++.+.++......+-+...++++|++|+|+|++.|++|+|+++|+|++.+++.......|+..++ +...... ...-
T Consensus 163 ~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~-~~~~~~~---~~~y 238 (285)
T PRK12847 163 LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL-GIISSLH---NIFY 238 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-HHHhcCc---HHHH
Confidence 34455555555566677778999999999999999999999999999999888777666665443 2222110 1111
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHH
Q 046336 113 IGHSILAFMVWLRSRKVDLDSFESQFSF 140 (167)
Q Consensus 113 ~gH~ila~~lw~ra~~vdl~sk~si~sF 140 (167)
.++++.+..++++.+.+|.+++++..+.
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (285)
T PRK12847 239 LAILAAAGIFYYQYKLLDFDNPANCMYA 266 (285)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2444445677777788888877654433
No 23
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.00 E-value=2.2e-08 Score=84.78 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHH
Q 046336 40 TTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGA 95 (167)
Q Consensus 40 ~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~a 95 (167)
+.....+.++.++++||+||+|||++.|++|+|+++|+|++.+++...........
T Consensus 159 l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~ 214 (279)
T PRK09573 159 LFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLS 214 (279)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33344455678999999999999999999999999999999998765555444433
No 24
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=98.93 E-value=5.2e-08 Score=85.43 Aligned_cols=115 Identities=12% Similarity=0.203 Sum_probs=70.5
Q ss_pred HHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHH-HHHHHHHHHHHHHHHHH
Q 046336 46 IFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIIS-KLVTIIGHSILAFMVWL 124 (167)
Q Consensus 46 ~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~-~~~~~~gH~ila~~lw~ 124 (167)
+...+.+++++.+|+||||+.|++|+|+++|++++..++..+..+.-+..+++|......+. -...+.+.+ ....+.+
T Consensus 183 ~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~-~~l~~~~ 261 (300)
T PRK12876 183 MIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLT-VILKTIK 261 (300)
T ss_pred HHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-HHHHHHH
Confidence 33446789999999999999999999999999998777776666665555556655433221 111121222 2222345
Q ss_pred HHhhcCCCChhhHHHHH-HHhcccCCCCCchhHHHHHHhhhhcC
Q 046336 125 RSRKVDLDSFESQFSFY-MYLWKASDYSTSVLNYIEYFLIHFLR 167 (167)
Q Consensus 125 ra~~vdl~sk~si~sFY-mfIWk~~~~~~~~LFy~EYll~P~~r 167 (167)
|.+.+|-++++.-..|+ +..|= +.++++-.+.-|.+|
T Consensus 262 ~~~~~~~~~~~~~~~~F~~N~~i------g~~~~~~~~~~~~~~ 299 (300)
T PRK12876 262 HYSLIDKKKSTLEQKFFLGNIYL------ALSFFVNMIGLFLLR 299 (300)
T ss_pred HHHHcCCCchHHHHHHHHhcCHH------HHHHHHHHHHHHccC
Confidence 55666666555444444 33554 455566555555544
No 25
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=98.91 E-value=9.7e-09 Score=89.07 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=56.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHH
Q 046336 32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAI 96 (167)
Q Consensus 32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI 96 (167)
.++...++...+..+.+..+..+||++|+||||+.|++|+|+++|+|++.+++..++.+.|+..+
T Consensus 186 ~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~ 250 (314)
T PRK07566 186 LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI 250 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777778889999999999999999999999999999999999888888888764
No 26
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=98.89 E-value=5.5e-08 Score=82.99 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 046336 34 TRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTII 113 (167)
Q Consensus 34 ~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~ 113 (167)
+.+.+.......+.+...+++++++|+|+|++.|++|+|+++|+|+..+.+.......+.. .+.+.... .+.... .
T Consensus 159 ~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~y~-~ 234 (281)
T TIGR01474 159 STAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLL-ALAGLIAG--LGPVYY-L 234 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHH-HHHHHHhC--CcHHHH-H
Confidence 4444434444556677889999999999999999999999999998765544444333333 33343322 122222 2
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 046336 114 GHSILAFMVWLRSRKVDLDSFESQFSFY 141 (167)
Q Consensus 114 gH~ila~~lw~ra~~vdl~sk~si~sFY 141 (167)
+=.+.+..+.++...+|.+++++..+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F 262 (281)
T TIGR01474 235 GLAAAALLLIRQIATLDIRDPENCLKLF 262 (281)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2334455555666777777666544443
No 27
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.84 E-value=4e-08 Score=84.50 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 046336 34 TRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTII 113 (167)
Q Consensus 34 ~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~ 113 (167)
+.+.+++...+.+.+...+++++++|+|+|++.|++|+|+++|+|+..+++.... +.-......|..... +.... .
T Consensus 165 ~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~-~~~~~l~~~~~~~~~--~~~y~-~ 240 (290)
T PRK12870 165 DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFA-LTVGFLAILGVLLEL--HLPFW-I 240 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHH-HHHHHHHHHHHHhCC--cHHHH-H
Confidence 3444555555666678888999999999999999999999999999888776322 222223334443321 11111 2
Q ss_pred HHHHHHHHHHHHHhhc--CCCChhhH-HHHHHHhcc
Q 046336 114 GHSILAFMVWLRSRKV--DLDSFESQ-FSFYMYLWK 146 (167)
Q Consensus 114 gH~ila~~lw~ra~~v--dl~sk~si-~sFYmfIWk 146 (167)
+=.+.+..+.++.+.+ |.+|++.- +-|.+-.|-
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~ 276 (290)
T PRK12870 241 GLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWI 276 (290)
T ss_pred HHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHH
Confidence 2224445555676777 87777655 445444443
No 28
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=98.81 E-value=6.2e-08 Score=81.83 Aligned_cols=43 Identities=30% Similarity=0.539 Sum_probs=37.3
Q ss_pred HHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHH
Q 046336 45 SIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNL 87 (167)
Q Consensus 45 ~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~l 87 (167)
.+..+.+++.||++|+|||++.|++|+|+++|+|++.+++...
T Consensus 164 fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 164 FLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred HHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 3445678899999999999999999999999999998876554
No 29
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=98.80 E-value=5.8e-08 Score=84.19 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 046336 38 IFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSI 117 (167)
Q Consensus 38 ~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~i 117 (167)
+..-.+..+-+..++.+||++|.|||++.|++|+|+++|++++.++...+..+.....+ |... ..+.......=.+
T Consensus 178 ~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~--~~g~~~~~~~~~~ 253 (297)
T PRK12871 178 LLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR--ELGPIALYGFLAG 253 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH--HhhHHHHHHHHHH
Confidence 33334445557888999999999999999999999999999888665544444443333 3222 2222222222244
Q ss_pred HHHHHHHHHhhcCCCChhhH
Q 046336 118 LAFMVWLRSRKVDLDSFESQ 137 (167)
Q Consensus 118 la~~lw~ra~~vdl~sk~si 137 (167)
.+..+.+|.+..+-++|++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~ 273 (297)
T PRK12871 254 FVLLAGANLYLWKEKSQDAG 273 (297)
T ss_pred HHHHHHHHHHHhcCCCHHHH
Confidence 55556677777777777654
No 30
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=98.73 E-value=1.7e-07 Score=80.82 Aligned_cols=89 Identities=16% Similarity=0.105 Sum_probs=59.3
Q ss_pred HHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 046336 48 AFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSR 127 (167)
Q Consensus 48 a~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~ 127 (167)
....+++++++|.|+|++.|++|+|+++|++++.+++.......+....+.+...... .... .+-.+.+..+.++.+
T Consensus 175 ~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~-~~~~~~~~~~l~~~~ 251 (291)
T PRK12886 175 VAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLG--PWFL-AGLAVTGILLLYEHW 251 (291)
T ss_pred HHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHH-HHHHHHHHHHHHHHH
Confidence 4557789999999999999999999999999999988776666666666555543211 1111 122233333335667
Q ss_pred hcCCCC-hhhHHH
Q 046336 128 KVDLDS-FESQFS 139 (167)
Q Consensus 128 ~vdl~s-k~si~s 139 (167)
.++.+| +++-.+
T Consensus 252 ~~~~~~~~~~~~~ 264 (291)
T PRK12886 252 LLRGGDLTRLDAA 264 (291)
T ss_pred HhCCCChhHHHHH
Confidence 777776 334444
No 31
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=98.72 E-value=4.5e-07 Score=78.24 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 046336 33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSS 101 (167)
Q Consensus 33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~ 101 (167)
++...+....-..+.+..+...|+++|+|+|++.|.+|+|+++|+|++.++-..++..+|...+.....
T Consensus 162 ~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~ 230 (284)
T TIGR00751 162 VDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLA 230 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556777889999999999999999999999999999999999999999999877665443
No 32
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=98.70 E-value=2e-07 Score=80.47 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=71.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHH
Q 046336 6 LVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCV 85 (167)
Q Consensus 6 I~~vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~ 85 (167)
.+...|.+.-+|-| ..|+ ..++.+.+....-+.+.+..+-..++++|+|.|++.|.+|+|+++|+|++.++-.
T Consensus 139 v~l~~G~l~v~g~~-yvqt------~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~ 211 (285)
T TIGR02235 139 CWLCFGPLAIAAAL-YAQS------QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVP 211 (285)
T ss_pred HHHHHHHHHHHHHH-HHhC------CcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHH
Confidence 34455655555553 2343 2567777778888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 046336 86 NLMLIGYGGAIIAGSS 101 (167)
Q Consensus 86 ~ll~~~Y~~aI~~g~~ 101 (167)
.++..+|+..+..-..
T Consensus 212 ~l~~~~y~~~i~~v~~ 227 (285)
T TIGR02235 212 WVISLSYVVLLIAVIG 227 (285)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999977655443
No 33
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=98.70 E-value=3.1e-07 Score=79.33 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 046336 38 IFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSI 117 (167)
Q Consensus 38 ~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~i 117 (167)
+++...+.+-+...+++++++|+|+|++.|++|+|+++|+|++.+++........+..+..|..... ......+-.+
T Consensus 170 ~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 246 (291)
T PRK12874 170 VFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHL---GLFAYLGVIV 246 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHH
Confidence 3333444566677789999999999999999999999999998877654444444444443433221 1222344555
Q ss_pred HHHHHHHHHhhcCCCChhhHHHH
Q 046336 118 LAFMVWLRSRKVDLDSFESQFSF 140 (167)
Q Consensus 118 la~~lw~ra~~vdl~sk~si~sF 140 (167)
.+..++++-+.++.+++++-..|
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~f 269 (291)
T PRK12874 247 SALILLYEHYLVRKDFKKIDKAF 269 (291)
T ss_pred HHHHHHHHHHHhcCCChHHHHHH
Confidence 56666777777766555544443
No 34
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=98.67 E-value=5.8e-08 Score=83.86 Aligned_cols=65 Identities=18% Similarity=0.361 Sum_probs=51.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046336 33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAG 99 (167)
Q Consensus 33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g 99 (167)
+|+..++... .+.+.++.+++|++|+|+|++.|+||+|+++|+|++.+++......+-..-+.+|
T Consensus 165 ~~~~~l~~a~--~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 165 LPPLLAVAGG--WLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred CcHHHHHHHH--HHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444 3778888999999999999999999999999999999888776666655555554
No 35
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=98.64 E-value=3.4e-07 Score=79.92 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=62.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 046336 32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSS 101 (167)
Q Consensus 32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~ 101 (167)
.++.+.+....-+.+.+..+-..+|++|+|.||+.|.+|+|+++|+|++.++-..+...+|+..+.....
T Consensus 171 ~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~ 240 (304)
T PRK07419 171 SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL 240 (304)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888899999999999999999999999999999999999999999999987765554
No 36
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.62 E-value=5.7e-07 Score=78.54 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 046336 44 MSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVW 123 (167)
Q Consensus 44 ~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw 123 (167)
..+-+...+.+++++|.|+|++.|++|+|+++|++++.++.......... ..+++......+--.+.. ..+...+.
T Consensus 201 ~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~---~~~~~~l~ 276 (314)
T PRK12878 201 SIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLL-MGLAFWLAGVPLLALLGL---LAAAAHLA 276 (314)
T ss_pred HHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHH-HHHHHHHhcCcHHHHHHH---HHHHHHHH
Confidence 33445566788999999999999999999999999998877544444433 233333222111112222 22333466
Q ss_pred HHHhhcCCCChhhHHHHHH
Q 046336 124 LRSRKVDLDSFESQFSFYM 142 (167)
Q Consensus 124 ~ra~~vdl~sk~si~sFYm 142 (167)
++-+++|.+++++-.++++
T Consensus 277 ~~~~~~~~~~~~~~~~~F~ 295 (314)
T PRK12878 277 WQIARLDIDDPDQCLRLFK 295 (314)
T ss_pred HHHHHcccCChHHHHHHHH
Confidence 7788888887776444443
No 37
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=98.60 E-value=6.3e-07 Score=76.45 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=56.1
Q ss_pred HHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 046336 50 VNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKV 129 (167)
Q Consensus 50 ~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~v 129 (167)
......+++|.|+|++.|++|+|+++|.|++.+++..... ........+..... +... ..+=.+....+.++.+.+
T Consensus 177 ~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~y-~~~~~~~~~~~~~~~~~~ 252 (282)
T PRK12848 177 AYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLA-TLALLAWAGWLLGL--GWAY-YWGLLVAAALFVYQQKLI 252 (282)
T ss_pred HHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHH-HHHHHHHHHHHhcC--cHHH-HHHHHHHHHHHHHHHHHc
Confidence 4445566889999999999999999999998877643333 33333333433221 2221 233335556666778899
Q ss_pred CCCChhhH-HHHHH
Q 046336 130 DLDSFESQ-FSFYM 142 (167)
Q Consensus 130 dl~sk~si-~sFYm 142 (167)
|.+++++. ..|++
T Consensus 253 ~~~~~~~~~~~F~~ 266 (282)
T PRK12848 253 RDREREACFKAFLN 266 (282)
T ss_pred CCCCHHHHHHHHHh
Confidence 98887654 33433
No 38
>PRK13592 ubiA prenyltransferase; Provisional
Probab=98.57 E-value=9.1e-08 Score=84.26 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHH
Q 046336 38 IFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYG 93 (167)
Q Consensus 38 ~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~ 93 (167)
+.+.....+.++++||.||+|| |||++. .+|+|+++|.|++.+++..+..+..+
T Consensus 178 ~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~ 231 (299)
T PRK13592 178 VLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDIL 231 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHH
Confidence 3445566778899999999999 899975 99999999999999999877665544
No 39
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=98.57 E-value=2.5e-07 Score=80.85 Aligned_cols=62 Identities=19% Similarity=0.116 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 046336 40 TTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSS 101 (167)
Q Consensus 40 ~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~ 101 (167)
...-+.+....+.+.||++|+|+||+.|.+|+|+++|+|++.++-..+...+|+..+..-..
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~ 255 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLM 255 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556667789999999999999999999999999999999999999999876654443
No 40
>PLN02922 prenyltransferase
Probab=98.50 E-value=3.7e-06 Score=73.75 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=62.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 046336 32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSS 102 (167)
Q Consensus 32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~ 102 (167)
.++.+.+....=+.+.+..+-..++++|+|.||+.|.+|+|+++|+|++.++-..++..+|+..+...+..
T Consensus 185 ~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~ 255 (315)
T PLN02922 185 PLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLK 255 (315)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777888888889999999999999999999999999999999999999999999999887665554
No 41
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=98.34 E-value=1.1e-05 Score=70.56 Aligned_cols=100 Identities=11% Similarity=-0.038 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 046336 43 IMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMV 122 (167)
Q Consensus 43 F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~l 122 (167)
.+.+-+...+++++++|.|+|++.|++|+|++.|++ ...++..+-.+.-.....+|...... .... .+=++.+..+
T Consensus 178 ~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~--~~y~-~~~~~~~~~l 253 (294)
T PRK12873 178 ATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVG--FIFW-PFWLIASIGM 253 (294)
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCc--HHHH-HHHHHHHHHH
Confidence 334445557799999999999999999999999975 44544444444444445556554321 1111 2334455666
Q ss_pred HHHHhhcCCCC---hhhHHHHHHHhcc
Q 046336 123 WLRSRKVDLDS---FESQFSFYMYLWK 146 (167)
Q Consensus 123 w~ra~~vdl~s---k~si~sFYmfIWk 146 (167)
.++.+.+|.++ ++-..-|.+..|-
T Consensus 254 ~~~~~~~~~~~~~~~~c~~~F~~n~~~ 280 (294)
T PRK12873 254 QRDILKLFPEKQSIKTIGNHFSNQVIL 280 (294)
T ss_pred HHHHHHhCcCcccHHHHHHHHHhccHH
Confidence 67888898876 4455777776663
No 42
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=97.96 E-value=0.00011 Score=62.82 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=27.8
Q ss_pred cCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHH
Q 046336 56 DLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLML 89 (167)
Q Consensus 56 DieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~ 89 (167)
+..|.|.|++.|++|+|+++|+|++.++...+..
T Consensus 180 ~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~ 213 (279)
T PRK12869 180 ALKYREDYRRAGVPMLPAVVGEKTSVRAISISNA 213 (279)
T ss_pred HHHhHHhHHHcCCeecceeecHHHHHHHHHHHHH
Confidence 5567788999999999999999999877654433
No 43
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=97.78 E-value=0.00038 Score=59.10 Aligned_cols=89 Identities=13% Similarity=0.036 Sum_probs=49.6
Q ss_pred cCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCC-Ch
Q 046336 56 DLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLD-SF 134 (167)
Q Consensus 56 DieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~-sk 134 (167)
..+|.|.||+.|++|+|+++|.|++.+++.......-....+.+.... .+....+.+=.+.+..++++.+.+|.+ ++
T Consensus 179 a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~ 256 (280)
T TIGR01473 179 ALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG--TGWLYLIVATLLGALFLYLAFKFYRDPTDR 256 (280)
T ss_pred HHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 357888999999999999999999887665444433333333333221 112222222233344455555566555 33
Q ss_pred -hhHHHHHHHhcc
Q 046336 135 -ESQFSFYMYLWK 146 (167)
Q Consensus 135 -~si~sFYmfIWk 146 (167)
++-+.|..-.|-
T Consensus 257 ~~~~~~f~~s~~~ 269 (280)
T TIGR01473 257 KKARKLFKFSLIY 269 (280)
T ss_pred HHHHHHHHHHHHH
Confidence 234445444443
No 44
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=97.58 E-value=0.00081 Score=57.92 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=26.3
Q ss_pred hccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHH
Q 046336 54 LKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLI 90 (167)
Q Consensus 54 vKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~ 90 (167)
+||.|| |++.|++|+|+++|.|++.+++.....+
T Consensus 189 ~~d~~D---~~~~G~~tlpv~~G~~~~~~~~~~~~~~ 222 (296)
T PRK04375 189 IFRKDD---YAAAGIPMLPVVKGIRVTKRQILLYTVL 222 (296)
T ss_pred HHHHhh---HHHcCCCccceeeCHHHHHHHHHHHHHH
Confidence 566555 6999999999999999988766544333
No 45
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=97.15 E-value=0.0051 Score=54.70 Aligned_cols=67 Identities=24% Similarity=0.333 Sum_probs=55.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHH
Q 046336 32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIA 98 (167)
Q Consensus 32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~ 98 (167)
.++........-..+-+..+...+.+-|+|=|++.|-+|+|+|+|+++....=..++..+|...++.
T Consensus 173 ~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~ 239 (303)
T COG1575 173 RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIF 239 (303)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666677777889999999999999999999999999999999888988888877653
No 46
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=96.77 E-value=0.022 Score=49.81 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHH
Q 046336 36 SFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLC 84 (167)
Q Consensus 36 ~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~ 84 (167)
..+++..++.+-+......++++|.|+|++.|++|+|++.|+|++.+..
T Consensus 171 ~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~ 219 (306)
T PRK13362 171 GALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI 219 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence 3333333333334444466788888889999999999999999888744
No 47
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=79.99 E-value=2.4 Score=37.83 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=43.7
Q ss_pred hccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 046336 54 LKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSII 106 (167)
Q Consensus 54 vKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~ 106 (167)
-++-.|.|.||+-||-|+++.+|+.....+-.-++..-|..-.+.|.-.+-++
T Consensus 248 snntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~ 300 (359)
T KOG4581|consen 248 SNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISF 300 (359)
T ss_pred cCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999998877777777778988888887665433
No 48
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=76.18 E-value=21 Score=31.04 Aligned_cols=48 Identities=13% Similarity=0.000 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhH---hHHhHHHHHHHHHH
Q 046336 41 TAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLL---GKEKVLPLCVNLML 89 (167)
Q Consensus 41 t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~l---G~~~~~~i~~~ll~ 89 (167)
.....+....-++++|.-|.|-|++.+ ++=|+.- .++.+..++..++.
T Consensus 60 ll~~~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~is~~~a~~~~~~l~~ 110 (306)
T TIGR02056 60 LLSGPCLTGYTQTINDFYDRDIDAINE-PYRPIPSGAISEPEVITQIVLLFI 110 (306)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence 344455556668999999999998776 3344443 45555554443333
No 49
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=74.23 E-value=43 Score=28.56 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=21.7
Q ss_pred HHHHHHHHhccCCCchhhhhcCC-cchhhhHhH
Q 046336 46 IFAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 77 (167)
Q Consensus 46 ~Fa~~iaIvKDieDieGD~~~Gi-~Tl~i~lG~ 77 (167)
......-+++|+.|.|=||+.-- +.=|+--|+
T Consensus 58 ~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 58 LARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 33344449999999999998865 344554553
No 50
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=74.10 E-value=7.4 Score=35.38 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=55.6
Q ss_pred cCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChh
Q 046336 56 DLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFE 135 (167)
Q Consensus 56 DieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~sk~ 135 (167)
--+|-+-|-+-|+++-+.|+|.+.=.|++. +-..--+.--++|..+...|. .... -...+.=|-++-.+||++++.
T Consensus 245 AHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La~aG~~s~q~~p-yy~~--lg~~~~~L~~~i~~vdiDnp~ 320 (353)
T KOG1381|consen 245 AHQDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLAAAGIASDQTWP-YYAA--LGAVAARLGSQIYKVDIDNPS 320 (353)
T ss_pred hcccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHHHhhhccCCCch-HHHH--HHHHHHHHHhheeeeecCChH
Confidence 358999999999999999999987777653 222223333345777776663 2222 334555667788999999988
Q ss_pred hHHHHH
Q 046336 136 SQFSFY 141 (167)
Q Consensus 136 si~sFY 141 (167)
.....+
T Consensus 321 dC~k~f 326 (353)
T KOG1381|consen 321 DCWKKF 326 (353)
T ss_pred HHHHHH
Confidence 765443
No 51
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=71.23 E-value=42 Score=28.21 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=25.3
Q ss_pred HHHHHHhccCCCchhhhhcCCcchhhhHh---HHhHHHHHH
Q 046336 48 AFVNGLLKDLPDVEGDKAFGMQTLCVLLG---KEKVLPLCV 85 (167)
Q Consensus 48 a~~iaIvKDieDieGD~~~Gi~Tl~i~lG---~~~~~~i~~ 85 (167)
..+-.+++|..|.|=|++. -+.=|+.-| ++.+..++.
T Consensus 50 ~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~ 89 (279)
T PRK12884 50 SGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAI 89 (279)
T ss_pred HHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHH
Confidence 3444599999999999988 366676666 344444443
No 52
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=69.86 E-value=19 Score=30.50 Aligned_cols=37 Identities=14% Similarity=-0.125 Sum_probs=23.5
Q ss_pred HHHHHHHhccCCCchhhhhcCCcchhhhHh---HHhHHHHH
Q 046336 47 FAFVNGLLKDLPDVEGDKAFGMQTLCVLLG---KEKVLPLC 84 (167)
Q Consensus 47 Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG---~~~~~~i~ 84 (167)
+...-++++|.-|.|-|++.+ ++=|+.-| +|.+..++
T Consensus 50 ~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~ 89 (283)
T TIGR01476 50 GTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNW 89 (283)
T ss_pred HHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHH
Confidence 445556999999999999765 44444333 34444443
No 53
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=60.69 E-value=86 Score=25.09 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=23.2
Q ss_pred HHHHHHHHhccCCCchhhhhcC-CcchhhhHhHHh
Q 046336 46 IFAFVNGLLKDLPDVEGDKAFG-MQTLCVLLGKEK 79 (167)
Q Consensus 46 ~Fa~~iaIvKDieDieGD~~~G-i~Tl~i~lG~~~ 79 (167)
.........+|..|.|=|+... -+.-|+.-|+-+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 6666677889999999999952 234455444443
No 54
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=60.20 E-value=77 Score=26.86 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=24.9
Q ss_pred HHHHHHhccCCCchhhhhcCCcchhhhHh---HHhHHHHHHHH
Q 046336 48 AFVNGLLKDLPDVEGDKAFGMQTLCVLLG---KEKVLPLCVNL 87 (167)
Q Consensus 48 a~~iaIvKDieDieGD~~~Gi~Tl~i~lG---~~~~~~i~~~l 87 (167)
..+-.+++|+-|.|-|++.. +.=|+.-| ++.+..++..+
T Consensus 50 ~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l 91 (279)
T PRK09573 50 CAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITL 91 (279)
T ss_pred HHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHH
Confidence 34445999999999999764 55555444 45555444433
No 55
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=59.86 E-value=55 Score=23.37 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=35.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 046336 76 GKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMV 122 (167)
Q Consensus 76 G~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~l 122 (167)
|+|++..+...++.+.-..+.++|....+.-....+.++-.+++.++
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv 51 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLV 51 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999988776655555544444444444
No 56
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=55.23 E-value=1.3e+02 Score=25.31 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhccCCCchhhhhcC
Q 046336 44 MSIFAFVNGLLKDLPDVEGDKAFG 67 (167)
Q Consensus 44 ~~~Fa~~iaIvKDieDieGD~~~G 67 (167)
..+.......++|..|.|-|+..+
T Consensus 45 ~~~~~~~~~~~N~~~D~~~D~~n~ 68 (285)
T PRK12872 45 TFLIAAAVYIINYLTDLEEDIINK 68 (285)
T ss_pred HHHHHHHHHHhhhhcCCchhhcCC
Confidence 334455666899999999998654
No 57
>PRK13592 ubiA prenyltransferase; Provisional
Probab=52.48 E-value=29 Score=31.12 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=31.8
Q ss_pred HHHHHHhCCCcccchHHHHHHHHHHHHH--HHHHHhccCCCchhhhhcC
Q 046336 21 HSQTYVLGRPFIMTRSFIFTTAIMSIFA--FVNGLLKDLPDVEGDKAFG 67 (167)
Q Consensus 21 H~q~~~~~~p~~~~~~~~f~t~F~~~Fa--~~iaIvKDieDieGD~~~G 67 (167)
.+-+.+...+..|++..=...++.++|. ..-.+++|..|.|=||.+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~ 78 (299)
T PRK13592 30 YMITLLSNHISSFRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLF 78 (299)
T ss_pred HHHhhhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcC
Confidence 3455566556677766555555555543 4456999999999998764
No 58
>PRK13591 ubiA prenyltransferase; Provisional
Probab=49.97 E-value=70 Score=28.72 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhc
Q 046336 20 IHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAF 66 (167)
Q Consensus 20 ~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~ 66 (167)
.|+...++|.|..+|-+++.. +....-..++|.-|.|-|+..
T Consensus 48 ~~~a~lL~g~~~~~~~~~~~~-----L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 48 IHIAFLLLGLQSSILTCIAGG-----LIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HHHHHHHhCCCcchHHHHHHH-----HHHHHHHHHhhhccchhhhcc
Confidence 576677788777777555332 234455678999999999884
No 59
>PRK13595 ubiA prenyltransferase; Provisional
Probab=49.06 E-value=1.1e+02 Score=27.17 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=33.9
Q ss_pred Cccc-chHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhh---hHhHHhHHHHHHHHHHH
Q 046336 30 PFIM-TRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCV---LLGKEKVLPLCVNLMLI 90 (167)
Q Consensus 30 p~~~-~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i---~lG~~~~~~i~~~ll~~ 90 (167)
...+ |..+.....|..-....+..++|.-|.|=|++.. ++=|+ ++.++.+..++..++..
T Consensus 41 ~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Np-r~~~i~~G~is~~~~~~~~~~~~~~ 104 (292)
T PRK13595 41 LYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASP-RKGGWQGARLSPGEVRPLLRAVLLL 104 (292)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC-CCCCCCcCccCHHHHHHHHHHHHHH
Confidence 3444 3444444455555666778999999999998543 22233 44455555544433333
No 60
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=47.78 E-value=1.2e+02 Score=25.65 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=24.5
Q ss_pred HHHHhccCCCchhhhhcCCcchhhhHh---HHhHHHHHHHH
Q 046336 50 VNGLLKDLPDVEGDKAFGMQTLCVLLG---KEKVLPLCVNL 87 (167)
Q Consensus 50 ~iaIvKDieDieGD~~~Gi~Tl~i~lG---~~~~~~i~~~l 87 (167)
+-.+++|.-|.|-|++.. +.=|+.-| ++.+..++..+
T Consensus 53 ~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l 92 (276)
T PRK12882 53 AGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILL 92 (276)
T ss_pred HHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHH
Confidence 334999999999999765 66666665 44444444333
No 61
>PLN00012 chlorophyll synthetase; Provisional
Probab=47.40 E-value=1.1e+02 Score=27.80 Aligned_cols=28 Identities=18% Similarity=-0.041 Sum_probs=20.6
Q ss_pred HHHHHHhccCCCchhhhhcCCcchhhhHh
Q 046336 48 AFVNGLLKDLPDVEGDKAFGMQTLCVLLG 76 (167)
Q Consensus 48 a~~iaIvKDieDieGD~~~Gi~Tl~i~lG 76 (167)
...-++++|.-|.|-|++.+ +.=|+.-|
T Consensus 136 ~~~an~iNDy~D~~iD~~~~-~~Rpi~sG 163 (375)
T PLN00012 136 TGYTQTINDWYDREIDAINE-PYRPIPSG 163 (375)
T ss_pred HHHHHHHHCeecHhhhccCC-CCCCcCCC
Confidence 34456999999999999886 55555555
No 62
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=45.36 E-value=70 Score=28.05 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=17.6
Q ss_pred hccCCCchhhhhcCCcchhhhHhH
Q 046336 54 LKDLPDVEGDKAFGMQTLCVLLGK 77 (167)
Q Consensus 54 vKDieDieGD~~~Gi~Tl~i~lG~ 77 (167)
++|..|.|=||... .+-|+.-|+
T Consensus 72 iNd~~D~~iD~ink-p~rPiasG~ 94 (308)
T PRK12887 72 LNQLTDIEIDRINK-PHLPLAAGE 94 (308)
T ss_pred HhhhhhHHHHhcCC-CCCCcCCcc
Confidence 99999999999654 667665454
No 63
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=45.31 E-value=83 Score=27.39 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=19.0
Q ss_pred HhccCCCchhhhhcC-CcchhhhHhH
Q 046336 53 LLKDLPDVEGDKAFG-MQTLCVLLGK 77 (167)
Q Consensus 53 IvKDieDieGD~~~G-i~Tl~i~lG~ 77 (167)
.++|+.|.|=|++.. -+.=|+.-|+
T Consensus 63 ~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 63 TINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHhhHHhccccCCCCCCCCCCCCCC
Confidence 999999999998753 2456766664
No 64
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=44.57 E-value=1.4e+02 Score=25.60 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=23.6
Q ss_pred HHHHHHhccCCCchhhhhcCC---cchhh-hHhHHhHHHHHH
Q 046336 48 AFVNGLLKDLPDVEGDKAFGM---QTLCV-LLGKEKVLPLCV 85 (167)
Q Consensus 48 a~~iaIvKDieDieGD~~~Gi---~Tl~i-~lG~~~~~~i~~ 85 (167)
.-+-.+++|.-|.|=|++..- |.+|- ++.++.+..++.
T Consensus 49 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (279)
T PRK12869 49 SGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGS 90 (279)
T ss_pred HHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHH
Confidence 444459999999999998652 44432 334455544433
No 65
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=42.64 E-value=60 Score=27.57 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=22.9
Q ss_pred HHHHHHhccCCCchhhhhcC---Ccchhh-hHhHHhHHHHH
Q 046336 48 AFVNGLLKDLPDVEGDKAFG---MQTLCV-LLGKEKVLPLC 84 (167)
Q Consensus 48 a~~iaIvKDieDieGD~~~G---i~Tl~i-~lG~~~~~~i~ 84 (167)
..+-.+++|.-|.|-|++.. -|.+|- ++.+|.+..++
T Consensus 49 ~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~ 89 (282)
T TIGR01475 49 RTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMI 89 (282)
T ss_pred HHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHH
Confidence 34444999999999999862 233333 34445555443
No 66
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=42.63 E-value=71 Score=27.89 Aligned_cols=41 Identities=22% Similarity=-0.006 Sum_probs=25.3
Q ss_pred HHHHHHhccCCCchhhhhcCCcchhhhH---hHHhHHHHHHHHHH
Q 046336 48 AFVNGLLKDLPDVEGDKAFGMQTLCVLL---GKEKVLPLCVNLML 89 (167)
Q Consensus 48 a~~iaIvKDieDieGD~~~Gi~Tl~i~l---G~~~~~~i~~~ll~ 89 (167)
..+-.+++|.-|.|-|++.+ ++=|+.- .++.+..++..++.
T Consensus 78 ~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~ 121 (314)
T PRK07566 78 CGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTV 121 (314)
T ss_pred HHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHH
Confidence 34446999999999999754 4445433 44555554444333
No 67
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=40.92 E-value=2.4e+02 Score=24.46 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCCCch-----hhhhcCCcchhh-hHhHHhHHHHHHHHHHHHHHHHH
Q 046336 46 IFAFVNGLLKDLPDVE-----GDKAFGMQTLCV-LLGKEKVLPLCVNLMLIGYGGAI 96 (167)
Q Consensus 46 ~Fa~~iaIvKDieDie-----GD~~~Gi~Tl~i-~lG~~~~~~i~~~ll~~~Y~~aI 96 (167)
..-...++.+|..|-+ .|+..+.|.++- .+-+|.+..++..++.++-+.++
T Consensus 39 ~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi 95 (284)
T TIGR00751 39 LLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGL 95 (284)
T ss_pred HHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455666999999862 344433444332 23346677666555554444433
No 68
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=40.70 E-value=1.3e+02 Score=26.47 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=24.7
Q ss_pred HHHHHHhccCCCchhhhhcCC-cchhhh---HhHHhHHHHHHHHHH
Q 046336 48 AFVNGLLKDLPDVEGDKAFGM-QTLCVL---LGKEKVLPLCVNLML 89 (167)
Q Consensus 48 a~~iaIvKDieDieGD~~~Gi-~Tl~i~---lG~~~~~~i~~~ll~ 89 (167)
+-+.-+++|+-|.|=||++.- +.=|+. +.++.+..++..++.
T Consensus 59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~ 104 (295)
T PRK12324 59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLV 104 (295)
T ss_pred HHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 344559999999999999622 222333 344444444444333
No 69
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=39.56 E-value=99 Score=26.14 Aligned_cols=35 Identities=20% Similarity=0.070 Sum_probs=23.4
Q ss_pred HHHHHhccCCCchhhhhcCCcchhhhHh---HHhHHHHH
Q 046336 49 FVNGLLKDLPDVEGDKAFGMQTLCVLLG---KEKVLPLC 84 (167)
Q Consensus 49 ~~iaIvKDieDieGD~~~Gi~Tl~i~lG---~~~~~~i~ 84 (167)
.+-.+++|.-|.|=|+..+ ++=|+.-| ++.+..++
T Consensus 51 ~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~ 88 (277)
T PRK12883 51 SGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYS 88 (277)
T ss_pred HHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHH
Confidence 3456999999999999765 55555544 44444433
No 70
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=37.19 E-value=35 Score=26.57 Aligned_cols=42 Identities=14% Similarity=0.422 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHH
Q 046336 5 TLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFV 50 (167)
Q Consensus 5 cI~~vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~ 50 (167)
-++++==++||+-+|+|+.+ ++-.++...+|...|+++-++.
T Consensus 61 ~~lAvvQi~VqL~yFLHm~~----k~~~~~~~~if~gi~va~~tv~ 102 (110)
T TIGR02908 61 LLLAAVQVAFQLYYFMHMKD----KGHEVPAQFIYGGVFVTMLVVL 102 (110)
T ss_pred HHHHHHHHHHHHHHheeeCC----CccchHHHHHHHHHHHHHHHHH
Confidence 34556667899999999973 4677888888888888776654
No 71
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=37.13 E-value=2.3e+02 Score=27.39 Aligned_cols=71 Identities=10% Similarity=-0.042 Sum_probs=41.8
Q ss_pred hhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 046336 71 LCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFY 141 (167)
Q Consensus 71 l~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~sk~si~sFY 141 (167)
++-++|.|++..++...-.++.+....+.........+.+.+.+.+..-+..-+=++.++.++++-.+++.
T Consensus 85 LaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~ 155 (511)
T TIGR00806 85 LTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYS 155 (511)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 34688889888877766666666555543333444455666666654444444445556665555444443
No 72
>COG2246 Predicted membrane protein [Function unknown]
Probab=36.36 E-value=2.1e+02 Score=22.37 Aligned_cols=51 Identities=25% Similarity=0.494 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHH---HhccC
Q 046336 4 FTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNG---LLKDL 57 (167)
Q Consensus 4 ~cI~~vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~ia---IvKDi 57 (167)
.++.++=|.++|++.+.=.... ++.|...+.-..+.++.. ++++.+ -+||.
T Consensus 16 F~~VG~~~t~V~~~~~~ll~~~-~~~~~~~A~~~a~~~~ii--~sf~~N~~wTF~~~ 69 (139)
T COG2246 16 FAIVGGLGTLVDFAVLWLLVKA-LGVPYALANAIAYEAAII--FSFVLNRRWTFRDR 69 (139)
T ss_pred HHhcchHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHH--HHHHHHceeeEeec
Confidence 5788889999999998665543 444444444444444443 333333 56665
No 73
>PRK10581 geranyltranstransferase; Provisional
Probab=35.77 E-value=56 Score=28.54 Aligned_cols=45 Identities=27% Similarity=0.309 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCCCchhh-----------hhcCCcchhhhHhHHhHHHHHHHHHHH
Q 046336 46 IFAFVNGLLKDLPDVEGD-----------KAFGMQTLCVLLGKEKVLPLCVNLMLI 90 (167)
Q Consensus 46 ~Fa~~iaIvKDieDieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~~ 90 (167)
-+..+--|..|+-|+.|| .+.|-.|+|+..|.+++...+--...-
T Consensus 214 ~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~ 269 (299)
T PRK10581 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDD 269 (299)
T ss_pred HHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333333489999998776 457999999999998877765544443
No 74
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=35.34 E-value=3.3e+02 Score=24.33 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHhccCCCchhhhhcCCcchhhhHh---HHhHHHHHHHHHHH
Q 046336 52 GLLKDLPDVEGDKAFGMQTLCVLLG---KEKVLPLCVNLMLI 90 (167)
Q Consensus 52 aIvKDieDieGD~~~Gi~Tl~i~lG---~~~~~~i~~~ll~~ 90 (167)
.+++|.-|.|=|+..+ +|=|+.-| +|.+..++..+..+
T Consensus 67 ~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~l 107 (331)
T PRK12392 67 QSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLL 107 (331)
T ss_pred hHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHH
Confidence 4899999999998754 45555444 55555555444443
No 75
>PLN02878 homogentisate phytyltransferase
Probab=34.97 E-value=1e+02 Score=27.43 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhH
Q 046336 37 FIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 77 (167)
Q Consensus 37 ~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~ 77 (167)
-+++..+|.++.+++ +|..|+|=||... -..|+--|+
T Consensus 28 ~~~~~l~~niyivgl---Nd~~D~EIDkINk-P~rPIpSG~ 64 (280)
T PLN02878 28 ALVPALLMNIYIVGL---NQLYDIEIDKVNK-PYLPLASGE 64 (280)
T ss_pred HHHHHHhhhhheech---hhhhhhcccccCC-CCCCCCCCC
Confidence 345556666666664 5999999998654 567776663
No 76
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=34.52 E-value=3.1e+02 Score=23.75 Aligned_cols=16 Identities=19% Similarity=-0.089 Sum_probs=14.2
Q ss_pred HHhccCCCchhhhhcC
Q 046336 52 GLLKDLPDVEGDKAFG 67 (167)
Q Consensus 52 aIvKDieDieGD~~~G 67 (167)
..++|+-|.|-|++..
T Consensus 56 ~~~Nd~~Dr~iD~~~~ 71 (284)
T PRK12888 56 MAANRIIDREIDARNP 71 (284)
T ss_pred HHHHhHHhhCCCCCCC
Confidence 3999999999999875
No 77
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=34.49 E-value=1.8e+02 Score=23.23 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhccCCCchhhh----------hcCCcchhhhHhHHhHHHH
Q 046336 43 IMSIFAFVNGLLKDLPDVEGDK----------AFGMQTLCVLLGKEKVLPL 83 (167)
Q Consensus 43 F~~~Fa~~iaIvKDieDieGD~----------~~Gi~Tl~i~lG~~~~~~i 83 (167)
|-.-+..+--|..|+-|+.||. +.|-.|+|...+.+.....
T Consensus 154 ~~~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~ 204 (236)
T cd00867 154 YGRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEY 204 (236)
T ss_pred HHHHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHH
Confidence 3333344444999999999998 8999999999985444443
No 78
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=32.63 E-value=1.9e+02 Score=25.34 Aligned_cols=16 Identities=25% Similarity=0.086 Sum_probs=13.8
Q ss_pred HHhccCCCchhhhhcC
Q 046336 52 GLLKDLPDVEGDKAFG 67 (167)
Q Consensus 52 aIvKDieDieGD~~~G 67 (167)
..++|+-|.|=|++..
T Consensus 66 ~~~Nd~~D~diD~~~~ 81 (300)
T PRK13106 66 MTNDNLADLEIDAKNP 81 (300)
T ss_pred HHHHhhHHhccccCCC
Confidence 3899999999999873
No 79
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=31.56 E-value=3.2e+02 Score=23.11 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=22.9
Q ss_pred HHHHHhccCCCchhhhhcC---Ccchhh-hHhHHhHHHHHHH
Q 046336 49 FVNGLLKDLPDVEGDKAFG---MQTLCV-LLGKEKVLPLCVN 86 (167)
Q Consensus 49 ~~iaIvKDieDieGD~~~G---i~Tl~i-~lG~~~~~~i~~~ 86 (167)
-+-.+++|.-|.|=|++.. -|.+|- ++.+|.+..++..
T Consensus 49 ~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~ 90 (280)
T TIGR01473 49 ASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLL 90 (280)
T ss_pred HHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 3334999999999999743 233332 3345555555443
No 80
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=31.08 E-value=2.9e+02 Score=22.54 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=12.1
Q ss_pred hHhHHhHHHHHHHHHHHHHH
Q 046336 74 LLGKEKVLPLCVNLMLIGYG 93 (167)
Q Consensus 74 ~lG~~~~~~i~~~ll~~~Y~ 93 (167)
|+|+|+...++..+..++..
T Consensus 63 r~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 63 KFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HhCchHHHHHHHHHHHHHHH
Confidence 56777777666555554443
No 81
>PRK10133 L-fucose transporter; Provisional
Probab=30.54 E-value=3.6e+02 Score=23.90 Aligned_cols=75 Identities=9% Similarity=-0.059 Sum_probs=38.8
Q ss_pred hhhHhHHhHHHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhhcCCCChh-hHHHHHHHhcc
Q 046336 72 CVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSS---SIISKLVTIIGHSILAFMVWLRSRKVDLDSFE-SQFSFYMYLWK 146 (167)
Q Consensus 72 ~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~---~~~~~~~~~~gH~ila~~lw~ra~~vdl~sk~-si~sFYmfIWk 146 (167)
.-|+|+|++..++..+..++.+.....+...+ ......+...|+...-...-........+++. ...++++..|.
T Consensus 85 ~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~ 163 (438)
T PRK10133 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 34678898888887666665544322222211 22334555667765544432222223222222 34677777765
No 82
>PRK10581 geranyltranstransferase; Provisional
Probab=28.85 E-value=1.7e+02 Score=25.48 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=38.4
Q ss_pred HHHHHH-------HhccCCCchhh-hhcCCcchhhhHhHHhHHHHHHHHHHHHHHHH
Q 046336 47 FAFVNG-------LLKDLPDVEGD-KAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGA 95 (167)
Q Consensus 47 Fa~~ia-------IvKDieDieGD-~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~a 95 (167)
.+.++| |-.|+|.+++| ...|-.|.-.++|...+...+-.++..+|-..
T Consensus 69 ~A~avEliH~aSLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 125 (299)
T PRK10581 69 PAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSIL 125 (299)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHH
Confidence 466777 77899977665 56899999999999988888777777776544
No 83
>PLN02776 prenyltransferase
Probab=27.77 E-value=4.7e+02 Score=23.78 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=18.8
Q ss_pred hhhhcCCcchhhhH--hHHhHHHHHHHHHH
Q 046336 62 GDKAFGMQTLCVLL--GKEKVLPLCVNLML 89 (167)
Q Consensus 62 GD~~~Gi~Tl~i~l--G~~~~~~i~~~ll~ 89 (167)
-|++-|++.+|+.- |+++...+......
T Consensus 178 Dy~~ag~pmlpv~~~~g~~ta~~i~~~~~~ 207 (341)
T PLN02776 178 DYAAGGYRMLSLADATGRRTALVALRNCLY 207 (341)
T ss_pred HHHhCCCcccCccccchHHHHHHHHHHHHH
Confidence 46789999999865 56666655544333
No 84
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=26.56 E-value=2e+02 Score=24.56 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=22.3
Q ss_pred HHHHHhccCCCchhhhhcCC-cchhhhHh---HHhHHHHHH
Q 046336 49 FVNGLLKDLPDVEGDKAFGM-QTLCVLLG---KEKVLPLCV 85 (167)
Q Consensus 49 ~~iaIvKDieDieGD~~~Gi-~Tl~i~lG---~~~~~~i~~ 85 (167)
-+-..++|+-|.|=|++..- +.=|+.-| ++.+..++.
T Consensus 54 ~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~ 94 (281)
T TIGR01474 54 GAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLL 94 (281)
T ss_pred HHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHH
Confidence 34449999999999986542 23444445 344444433
No 85
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=26.26 E-value=3.6e+02 Score=22.02 Aligned_cols=18 Identities=6% Similarity=-0.022 Sum_probs=10.6
Q ss_pred cCCCChhhHHHHHHHhcc
Q 046336 129 VDLDSFESQFSFYMYLWK 146 (167)
Q Consensus 129 vdl~sk~si~sFYmfIWk 146 (167)
...+++....+.|+...+
T Consensus 316 ~~~~~~~~~~~~~~~~~~ 333 (375)
T TIGR00899 316 LMPGRAGAATTLYTNTGR 333 (375)
T ss_pred hCcchhhHHHHHHHHHHH
Confidence 333455566777776655
No 86
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=23.80 E-value=3.9e+02 Score=21.47 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=14.2
Q ss_pred hHhHHhHHHHHHHHHHHHHHH
Q 046336 74 LLGKEKVLPLCVNLMLIGYGG 94 (167)
Q Consensus 74 ~lG~~~~~~i~~~ll~~~Y~~ 94 (167)
|+|+|++..++..+..+....
T Consensus 64 ~~G~r~~~~~~~~~~~~~~~~ 84 (377)
T TIGR00890 64 KFGPRAVAMLGGILYGLGFTF 84 (377)
T ss_pred HcCccchhHHhHHHHHHHHHH
Confidence 578888877776666655543
No 87
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=22.87 E-value=2.2e+02 Score=24.23 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=22.2
Q ss_pred HHHHHhccCCCchhhhhcCC-cchhhhHh---HHhHHHHHH
Q 046336 49 FVNGLLKDLPDVEGDKAFGM-QTLCVLLG---KEKVLPLCV 85 (167)
Q Consensus 49 ~~iaIvKDieDieGD~~~Gi-~Tl~i~lG---~~~~~~i~~ 85 (167)
-+-.+++|.-|.|=|++..- ++=|+.-| ++.+..++.
T Consensus 59 ~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~ 99 (285)
T PRK12847 59 SAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLF 99 (285)
T ss_pred HHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHH
Confidence 33449999999999986332 23444444 444444443
No 88
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=22.46 E-value=1.3e+02 Score=25.66 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=44.6
Q ss_pred hhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Q 046336 61 EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQ 137 (167)
Q Consensus 61 eGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~sk~si 137 (167)
.=|..+|++-+-+++|-+-. .+-..=+.+.|+.++..|..... +. +.++..|.|...--+.-|.||
T Consensus 17 k~n~ee~i~~lkvklG~eII-l~n~fkllivy~isl~~glil~t-------l~---~hlSy~flR~na~GaHak~SI 82 (198)
T COG4512 17 KLNAEEGISVLKVKLGFEII-LINLFKLLIVYAISLLHGLILLT-------LQ---IHLSYTFLRVNAFGAHAKHSI 82 (198)
T ss_pred HhcccccceEEEeecceeeh-HHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHcccccccccc
Confidence 44667788889999998843 33334456678888877766432 22 356778888887777766665
No 89
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=22.45 E-value=2.8e+02 Score=24.68 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=14.4
Q ss_pred HHhccCCCchhhhhcC
Q 046336 52 GLLKDLPDVEGDKAFG 67 (167)
Q Consensus 52 aIvKDieDieGD~~~G 67 (167)
..++|+-|.|=|++..
T Consensus 64 ~~~Nd~~DrdiD~~~~ 79 (300)
T PRK12876 64 IIVNQIIDCAIDKKNP 79 (300)
T ss_pred HHHHhHHHhcccCCCC
Confidence 3999999999999886
No 90
>COG2119 Predicted membrane protein [Function unknown]
Probab=22.26 E-value=2.9e+02 Score=23.47 Aligned_cols=74 Identities=14% Similarity=0.093 Sum_probs=48.9
Q ss_pred hhhhhcCCc-chhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhh----HHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q 046336 61 EGDKAFGMQ-TLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSI----ISKLVTIIGHSILAFMVWLRSRKVDLDSF 134 (167)
Q Consensus 61 eGD~~~Gi~-Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~----~~~~~~~~gH~ila~~lw~ra~~vdl~sk 134 (167)
-|||.+=+. .++.|.++..++--...-+..+-..+.++|-..++. +-....+..|.+.+..++.-.+..|-+..
T Consensus 16 iGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~~~~e~~ 94 (190)
T COG2119 16 IGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKEDDEEAQ 94 (190)
T ss_pred hccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 388766543 467777766666555555555666666777555433 44567778888888888888777766543
No 91
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=21.90 E-value=4.5e+02 Score=22.52 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=28.6
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 046336 74 LLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSI 117 (167)
Q Consensus 74 ~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~i 117 (167)
|+|+|++...+..+..+..+....+--.......+.+.+.|++.
T Consensus 70 r~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~ 113 (393)
T PRK09705 70 HVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGI 113 (393)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHH
Confidence 68999999999888877776554333222334445666667664
No 92
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=21.57 E-value=5.3e+02 Score=22.20 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=20.7
Q ss_pred HHhccCCCchhhhhcC---Ccchhh-hHhHHhHHHHH
Q 046336 52 GLLKDLPDVEGDKAFG---MQTLCV-LLGKEKVLPLC 84 (167)
Q Consensus 52 aIvKDieDieGD~~~G---i~Tl~i-~lG~~~~~~i~ 84 (167)
.+++|+-|.|=|++.. -|.+|- ++.+|.+..++
T Consensus 61 ~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~ 97 (296)
T PRK04375 61 GALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFG 97 (296)
T ss_pred HHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHH
Confidence 3999999999999853 233332 33445555444
No 93
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=21.28 E-value=4.6e+02 Score=22.78 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=25.8
Q ss_pred hhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 046336 71 LCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSI 117 (167)
Q Consensus 71 l~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~i 117 (167)
+.-|+|+|++..++..+..+.......+.-.......+.+...++..
T Consensus 66 l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 112 (412)
T TIGR02332 66 MLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAG 112 (412)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 34478889888777666665554443321111233344566666654
No 94
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=20.20 E-value=3.8e+02 Score=23.47 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=13.2
Q ss_pred HhccCCCchhhhhc
Q 046336 53 LLKDLPDVEGDKAF 66 (167)
Q Consensus 53 IvKDieDieGD~~~ 66 (167)
.++|+-|.|=|++.
T Consensus 55 ~~Ndi~Dr~iD~~~ 68 (286)
T PRK12895 55 SINRIEGLRYDMIN 68 (286)
T ss_pred HHHhHHHhcccCCC
Confidence 99999999999887
Done!