Query 046336
Match_columns 167
No_of_seqs 181 out of 271
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 19:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqk_A Arginine-glutamic acid 43.3 22 0.00074 23.3 3.2 24 129-153 39-62 (63)
2 3kra_B Geranyl diphosphate syn 38.3 27 0.00092 28.9 3.7 42 53-94 78-119 (274)
3 3m0g_A Farnesyl diphosphate sy 35.9 52 0.0018 27.6 5.1 51 41-91 202-263 (297)
4 2hdi_B Colicin-IA; outer membr 34.7 9.6 0.00033 28.1 0.4 16 50-65 72-92 (113)
5 3uca_A Geranyltranstransferase 32.2 1.9E+02 0.0065 24.5 8.2 44 53-96 112-156 (324)
6 3p8r_A Geranyltranstransferase 28.3 47 0.0016 27.8 3.6 48 43-90 217-275 (302)
7 3ts7_A Geranyltranstransferase 27.7 46 0.0016 28.3 3.5 53 40-92 214-277 (324)
8 4f62_A Geranyltranstransferase 26.4 58 0.002 27.7 3.9 52 40-91 207-269 (317)
9 2h8o_A Geranyltranstransferase 26.2 47 0.0016 28.3 3.3 47 43-89 250-307 (335)
10 3lsn_A Geranyltranstransferase 25.9 52 0.0018 27.6 3.5 53 40-92 208-271 (304)
11 2j1p_A Geranylgeranyl pyrophos 25.7 35 0.0012 28.4 2.3 43 42-87 220-262 (293)
12 3qkc_B Geranyl diphosphate syn 25.5 2.3E+02 0.0078 23.1 7.3 40 53-94 83-122 (273)
13 3llw_A Geranyltranstransferase 24.3 62 0.0021 27.3 3.6 53 40-92 215-276 (311)
14 3lom_A Geranyltranstransferase 22.5 54 0.0019 27.7 3.0 51 41-91 216-277 (313)
15 1rqj_A Geranyltranstransferase 22.5 68 0.0023 26.6 3.5 46 45-90 213-269 (299)
16 3pde_A Farnesyl-diphosphate sy 21.7 82 0.0028 26.6 3.9 54 41-94 211-275 (309)
17 1pw4_A Glycerol-3-phosphate tr 20.6 3.1E+02 0.011 21.5 7.5 23 74-96 88-110 (451)
18 3o7q_A L-fucose-proton symport 20.4 3.2E+02 0.011 21.5 8.3 75 72-146 85-163 (438)
19 3p8l_A Geranyltranstransferase 20.3 77 0.0026 26.6 3.4 47 45-91 216-273 (302)
No 1
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.27 E-value=22 Score=23.26 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=19.1
Q ss_pred cCCCChhhHHHHHHHhcccCCCCCc
Q 046336 129 VDLDSFESQFSFYMYLWKASDYSTS 153 (167)
Q Consensus 129 vdl~sk~si~sFYmfIWk~~~~~~~ 153 (167)
|.-.+-.++.+|| +.||+++..+|
T Consensus 39 v~~Kt~~~~v~fY-Y~wKkt~~~~~ 62 (63)
T 2yqk_A 39 LPNKETGELITFY-YYWKKTSGPSS 62 (63)
T ss_dssp CTTSCHHHHHHHH-HHHHCSSCCCC
T ss_pred cCCCcHHHHHHHH-hcccCCCCCCC
Confidence 6667888999999 68998776654
No 2
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=38.32 E-value=27 Score=28.88 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=33.4
Q ss_pred HhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHH
Q 046336 53 LLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGG 94 (167)
Q Consensus 53 IvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~ 94 (167)
|-.|+|+.+.|...|..|.-.++|...+...+-.++..++-.
T Consensus 78 IHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 119 (274)
T 3kra_B 78 VHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFEL 119 (274)
T ss_dssp HHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 789999556677799999999999998777777777666643
No 3
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=35.89 E-value=52 Score=27.56 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhccCCCchhh-----------hhcCCcchhhhHhHHhHHHHHHHHHHHH
Q 046336 41 TAIMSIFAFVNGLLKDLPDVEGD-----------KAFGMQTLCVLLGKEKVLPLCVNLMLIG 91 (167)
Q Consensus 41 t~F~~~Fa~~iaIvKDieDieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~ 91 (167)
.-|-.-+..+--|..|+-|+.|| .+.|-.|+|+.+|.+++...+--++.-+
T Consensus 202 ~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A 263 (297)
T 3m0g_A 202 TAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEA 263 (297)
T ss_dssp HHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444499999999885 4678999999999999888776555544
No 4
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=34.69 E-value=9.6 Score=28.14 Aligned_cols=16 Identities=50% Similarity=0.736 Sum_probs=11.6
Q ss_pred HHHHhcc-----CCCchhhhh
Q 046336 50 VNGLLKD-----LPDVEGDKA 65 (167)
Q Consensus 50 ~iaIvKD-----ieDieGD~~ 65 (167)
-++|..| -||+|||++
T Consensus 72 ~~nil~drnpvvtedvegdkk 92 (113)
T 2hdi_B 72 KRNILNDRNPVVTEDVEGDKK 92 (113)
T ss_dssp HHHTSCCCCSCCSSCHHHHHH
T ss_pred hhhhhcCCCCeeecccccchh
Confidence 3456666 389999986
No 5
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=32.22 E-value=1.9e+02 Score=24.48 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=35.6
Q ss_pred HhccCCCchhhh-hcCCcchhhhHhHHhHHHHHHHHHHHHHHHHH
Q 046336 53 LLKDLPDVEGDK-AFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAI 96 (167)
Q Consensus 53 IvKDieDieGD~-~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI 96 (167)
|-.|+|.+++|. ..|-.|.-.++|...+...+-.++.-++-...
T Consensus 112 IHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~ 156 (324)
T 3uca_A 112 IHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILV 156 (324)
T ss_dssp HHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 789999998875 57999999999999887778777777765443
No 6
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=28.26 E-value=47 Score=27.82 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhccCCCchhh-----------hhcCCcchhhhHhHHhHHHHHHHHHHH
Q 046336 43 IMSIFAFVNGLLKDLPDVEGD-----------KAFGMQTLCVLLGKEKVLPLCVNLMLI 90 (167)
Q Consensus 43 F~~~Fa~~iaIvKDieDieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~~ 90 (167)
|-.-+..+--|..|+-|+.|| -+.|-.|+|+.+|.+++...+--...-
T Consensus 217 ~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~ 275 (302)
T 3p8r_A 217 YAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQE 275 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 333344444488898888775 467999999999999887776554443
No 7
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=27.75 E-value=46 Score=28.34 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhccCCCchhh-----------hhcCCcchhhhHhHHhHHHHHHHHHHHHH
Q 046336 40 TTAIMSIFAFVNGLLKDLPDVEGD-----------KAFGMQTLCVLLGKEKVLPLCVNLMLIGY 92 (167)
Q Consensus 40 ~t~F~~~Fa~~iaIvKDieDieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y 92 (167)
+.-|-.-+..+--|..|+-|+.|| .+.|-.|+|+.+|.+++...+--...-+.
T Consensus 214 l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~ 277 (324)
T 3ts7_A 214 LDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAAL 277 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555599999998875 46799999999999999888776665544
No 8
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=26.36 E-value=58 Score=27.66 Aligned_cols=52 Identities=21% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhccCCCchhh-----------hhcCCcchhhhHhHHhHHHHHHHHHHHH
Q 046336 40 TTAIMSIFAFVNGLLKDLPDVEGD-----------KAFGMQTLCVLLGKEKVLPLCVNLMLIG 91 (167)
Q Consensus 40 ~t~F~~~Fa~~iaIvKDieDieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~ 91 (167)
+.-|-.-+..+--|..|+-|+.|| .+.|-.|+|+.+|.+++...+--...-+
T Consensus 207 l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A 269 (317)
T 4f62_A 207 LDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQA 269 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444599999998775 4679999999999999988776555443
No 9
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=26.24 E-value=47 Score=28.34 Aligned_cols=47 Identities=23% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhccCCCchhh-----------hhcCCcchhhhHhHHhHHHHHHHHHH
Q 046336 43 IMSIFAFVNGLLKDLPDVEGD-----------KAFGMQTLCVLLGKEKVLPLCVNLML 89 (167)
Q Consensus 43 F~~~Fa~~iaIvKDieDieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~ 89 (167)
|-.-+..+--|..|+-|+.|| -+.|-.|+|+.+|.+++...+--...
T Consensus 250 ~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~ 307 (335)
T 2h8o_A 250 FGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVA 307 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 333344444489999888775 45789999999998887766554443
No 10
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=25.85 E-value=52 Score=27.63 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhccCCCchhh-----------hhcCCcchhhhHhHHhHHHHHHHHHHHHH
Q 046336 40 TTAIMSIFAFVNGLLKDLPDVEGD-----------KAFGMQTLCVLLGKEKVLPLCVNLMLIGY 92 (167)
Q Consensus 40 ~t~F~~~Fa~~iaIvKDieDieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y 92 (167)
+.-|-.-+..+--|..|+-|+.|| .+.|-.|+|+.+|.+++...+--+..-+.
T Consensus 208 l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~ 271 (304)
T 3lsn_A 208 LQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQAL 271 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555599999999885 46789999999999999887766655544
No 11
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=25.73 E-value=35 Score=28.36 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHH
Q 046336 42 AIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNL 87 (167)
Q Consensus 42 ~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~l 87 (167)
-|-.-+..+--|..|+-|+.||. -.|+|+.+|.+++...+--.
T Consensus 220 ~~g~~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 220 KFARCIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 34444444444999999999998 68999999998887776544
No 12
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=25.53 E-value=2.3e+02 Score=23.14 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=31.1
Q ss_pred HhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHH
Q 046336 53 LLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGG 94 (167)
Q Consensus 53 IvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~ 94 (167)
|-.|+||.. | ..|-.|.-.++|...+...+-.++..++-.
T Consensus 83 IHDDI~D~d-~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 122 (273)
T 3qkc_B 83 THENLPLTD-G-PMSKSEIQHKFDPNIELLTGDGIIPFGLEL 122 (273)
T ss_dssp HHHSCCBTT-B-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccCc-c-CCCCCCchhhcCHHHHHHHHHHHHHHHHHH
Confidence 789999874 3 678889999999988777777777766643
No 13
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=24.28 E-value=62 Score=27.30 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhccCCCchhhh---------hcCCcchhhhHhHHhHHHHHHHHHHHHH
Q 046336 40 TTAIMSIFAFVNGLLKDLPDVEGDK---------AFGMQTLCVLLGKEKVLPLCVNLMLIGY 92 (167)
Q Consensus 40 ~t~F~~~Fa~~iaIvKDieDieGD~---------~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y 92 (167)
+.-|-.-+..+--|..|+-|+.||. +.|-.|+|+.+|.+++....--++.-+.
T Consensus 215 l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~ 276 (311)
T 3llw_A 215 LQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVL 276 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445999999998875 5799999999999999877666555443
No 14
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=22.53 E-value=54 Score=27.68 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhccCCCchhh-----------hhcCCcchhhhHhHHhHHHHHHHHHHHH
Q 046336 41 TAIMSIFAFVNGLLKDLPDVEGD-----------KAFGMQTLCVLLGKEKVLPLCVNLMLIG 91 (167)
Q Consensus 41 t~F~~~Fa~~iaIvKDieDieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~ 91 (167)
.-|-.-+..+--|..|+-|+.|| .+.|-.|+|+.+|.+++...+--+..-+
T Consensus 216 ~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A 277 (313)
T 3lom_A 216 RTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIA 277 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444489999998875 4689999999999999987776555443
No 15
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=22.47 E-value=68 Score=26.61 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCCCchhhh-----------hcCCcchhhhHhHHhHHHHHHHHHHH
Q 046336 45 SIFAFVNGLLKDLPDVEGDK-----------AFGMQTLCVLLGKEKVLPLCVNLMLI 90 (167)
Q Consensus 45 ~~Fa~~iaIvKDieDieGD~-----------~~Gi~Tl~i~lG~~~~~~i~~~ll~~ 90 (167)
.-+..+--|..|+-|+.||. +.|-.|+|+.+|.+++...+--...-
T Consensus 213 ~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~ 269 (299)
T 1rqj_A 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDD 269 (299)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 33333334889998888764 56899999999988776655444433
No 16
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=21.67 E-value=82 Score=26.61 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhccCCCchhh-----------hhcCCcchhhhHhHHhHHHHHHHHHHHHHHH
Q 046336 41 TAIMSIFAFVNGLLKDLPDVEGD-----------KAFGMQTLCVLLGKEKVLPLCVNLMLIGYGG 94 (167)
Q Consensus 41 t~F~~~Fa~~iaIvKDieDieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~ 94 (167)
.-|-.-+..+--|..|+-|+.|| .+.|-.|+|+.+|.+++....--++.-|+..
T Consensus 211 ~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~ 275 (309)
T 3pde_A 211 LQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAA 275 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444488999988764 5678899999999999988777777666543
No 17
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=20.62 E-value=3.1e+02 Score=21.54 Aligned_cols=23 Identities=13% Similarity=-0.219 Sum_probs=15.8
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHH
Q 046336 74 LLGKEKVLPLCVNLMLIGYGGAI 96 (167)
Q Consensus 74 ~lG~~~~~~i~~~ll~~~Y~~aI 96 (167)
|+|+|++..++..+..+......
T Consensus 88 r~g~r~~l~~~~~~~~~~~~~~~ 110 (451)
T 1pw4_A 88 RSNPRVFLPAGLILAAAVMLFMG 110 (451)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHH
Confidence 56888888877766666555443
No 18
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=20.45 E-value=3.2e+02 Score=21.49 Aligned_cols=75 Identities=9% Similarity=-0.094 Sum_probs=39.7
Q ss_pred hhhHhHHhHHHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHH-HHHHHHHhhcCCCChhhHHHHHHHhcc
Q 046336 72 CVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSS---SIISKLVTIIGHSILA-FMVWLRSRKVDLDSFESQFSFYMYLWK 146 (167)
Q Consensus 72 ~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~---~~~~~~~~~~gH~ila-~~lw~ra~~vdl~sk~si~sFYmfIWk 146 (167)
.=|+|+|++..++..+..+........+...+ ......+...|....- ...-.-++..+.+++....+.++..+.
T Consensus 85 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 163 (438)
T 3o7q_A 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 34679999988888777777666544333322 1222333444443222 222233444555566555666665544
No 19
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=20.34 E-value=77 Score=26.61 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=29.9
Q ss_pred HHHHHHHHHhccCCCchhh-----------hhcCCcchhhhHhHHhHHHHHHHHHHHH
Q 046336 45 SIFAFVNGLLKDLPDVEGD-----------KAFGMQTLCVLLGKEKVLPLCVNLMLIG 91 (167)
Q Consensus 45 ~~Fa~~iaIvKDieDieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~ 91 (167)
.-+..+--|..|+-|+.|| .+.|-.|+|+.+|.+++...+--+..-|
T Consensus 216 ~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A 273 (302)
T 3p8l_A 216 HHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEG 273 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344488898888765 5678999999999999988776554443
Done!