Query 046336
Match_columns 167
No_of_seqs 181 out of 271
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 19:22:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046336.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046336hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 49.8 8.2 0.0006 29.9 4.3 49 48-96 70-126 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 47.0 11 0.00077 29.1 4.6 42 53-94 79-121 (290)
3 d1v4ea_ a.128.1.1 (A:) Octopre 45.8 37 0.0027 25.7 7.7 95 53-158 71-165 (280)
4 d1rqja_ a.128.1.1 (A:) Farnesy 28.1 6 0.00044 30.7 0.1 32 53-84 221-263 (299)
5 d1fpsa_ a.128.1.1 (A:) Farnesy 27.1 1.1E+02 0.008 23.5 7.8 43 47-90 83-132 (348)
6 d2crga1 a.4.1.3 (A:8-64) Metas 20.6 28 0.002 20.8 2.2 20 129-149 31-50 (57)
7 d1rtra_ a.128.1.1 (A:) Farnesy 19.5 16 0.0012 27.9 1.1 29 53-81 215-254 (290)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 14.9 2E+02 0.014 20.5 6.4 23 72-94 83-105 (447)
9 d1b24a2 d.95.2.1 (A:100-179) D 12.7 10 0.00073 25.2 -1.6 16 51-66 8-23 (80)
10 d2j3wa1 d.110.4.3 (A:1-140) Se 9.2 98 0.0072 21.2 2.8 28 130-166 88-115 (140)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=49.81 E-value=8.2 Score=29.89 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=38.7
Q ss_pred HHHHH-------HhccCCCchh-hhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHH
Q 046336 48 AFVNG-------LLKDLPDVEG-DKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAI 96 (167)
Q Consensus 48 a~~ia-------IvKDieDieG-D~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI 96 (167)
+.++| |-.|++|... |...|..|.-.++|...+-..+-.++..++-...
T Consensus 70 A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~ 126 (299)
T d1rqja_ 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILS 126 (299)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHH
Confidence 55666 5679999887 4799999999999999887777777766665544
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=47.04 E-value=11 Score=29.07 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=33.2
Q ss_pred HhccCCCchhh-hhcCCcchhhhHhHHhHHHHHHHHHHHHHHH
Q 046336 53 LLKDLPDVEGD-KAFGMQTLCVLLGKEKVLPLCVNLMLIGYGG 94 (167)
Q Consensus 53 IvKDieDieGD-~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~ 94 (167)
|-.|++|+++| ...|-.|.-.++|.+.+...+-.++..++-.
T Consensus 79 IHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 79 IHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 77899998775 5889999999999998877776666555543
No 3
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=45.85 E-value=37 Score=25.74 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=58.1
Q ss_pred HhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 046336 53 LLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLD 132 (167)
Q Consensus 53 IvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~ 132 (167)
|-.|+.| +.|...|..|.-.++|...+...+-.++..++-.. .....+..........++...+-.+-...+.-++
T Consensus 71 IhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~~~l--~~~~~~~~~~~l~~~~~~~~~Gq~~d~~~~~~~~- 146 (280)
T d1v4ea_ 71 LHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTV--EEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKPI- 146 (280)
T ss_dssp HHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhhhcc--cccccccccccchhhcccchhHHHHHHHhccCCC-
Confidence 7789988 67889999999999999988777766665554332 2333333333344455666555555444443333
Q ss_pred ChhhHHHHHHHhcccCCCCCchhHHH
Q 046336 133 SFESQFSFYMYLWKASDYSTSVLNYI 158 (167)
Q Consensus 133 sk~si~sFYmfIWk~~~~~~~~LFy~ 158 (167)
+..+|+.-+-+ .|..||.+
T Consensus 147 ---t~~~y~~~i~~----KT~~lf~~ 165 (280)
T d1v4ea_ 147 ---TKEEYLRIVEG----KSGALFGL 165 (280)
T ss_dssp ---CHHHHHHHHHH----HTHHHHHH
T ss_pred ---CHHHHHHHHHh----ccccHHHH
Confidence 33455555544 46667654
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=28.13 E-value=6 Score=30.71 Aligned_cols=32 Identities=34% Similarity=0.469 Sum_probs=25.1
Q ss_pred HhccCCCchh-----------hhhcCCcchhhhHhHHhHHHHH
Q 046336 53 LLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVLPLC 84 (167)
Q Consensus 53 IvKDieDieG-----------D~~~Gi~Tl~i~lG~~~~~~i~ 84 (167)
|..|+.|+.| |.+.|-.|+|+.+|.+++..-.
T Consensus 221 i~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~ 263 (299)
T d1rqja_ 221 VQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHH
Confidence 7888888765 5567889999999998865443
No 5
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.09 E-value=1.1e+02 Score=23.47 Aligned_cols=43 Identities=12% Similarity=-0.084 Sum_probs=31.9
Q ss_pred HHHHHH-------HhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHH
Q 046336 47 FAFVNG-------LLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLI 90 (167)
Q Consensus 47 Fa~~ia-------IvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~ 90 (167)
.+.++| |--||.| +.|...|..|.-.++|...+...+-.++..
T Consensus 83 ~A~avEliH~asLihDDi~D-~~~~RRG~pt~~~~~g~~~ail~gd~ll~~ 132 (348)
T d1fpsa_ 83 VGWCIELFQAFFLVADDIMD-QSLTRRGQLCWYKKEGVGLDAINDSFLLES 132 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCCEETTEECTTTSTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccc-CCccccccchhhhhccccHHHHHHHHHHHH
Confidence 455566 6788866 567789999999999998776666555543
No 6
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.65 E-value=28 Score=20.78 Aligned_cols=20 Identities=35% Similarity=0.903 Sum_probs=15.9
Q ss_pred cCCCChhhHHHHHHHhcccCC
Q 046336 129 VDLDSFESQFSFYMYLWKASD 149 (167)
Q Consensus 129 vdl~sk~si~sFYmfIWk~~~ 149 (167)
+.-.|..++.+|| +.||+++
T Consensus 31 v~~Ks~~~~v~fY-Y~~Kkt~ 50 (57)
T d2crga1 31 LPWKSLTSIIEYY-YMWKTTD 50 (57)
T ss_dssp CSSSCHHHHHHHH-HHHHTCC
T ss_pred cCCCCHHHHHHHH-HHHhCCc
Confidence 5677999999999 5799643
No 7
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=19.46 E-value=16 Score=27.92 Aligned_cols=29 Identities=34% Similarity=0.382 Sum_probs=19.3
Q ss_pred HhccCCCchh-----------hhhcCCcchhhhHhHHhHH
Q 046336 53 LLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVL 81 (167)
Q Consensus 53 IvKDieDieG-----------D~~~Gi~Tl~i~lG~~~~~ 81 (167)
|..|+.|+.| |-+.|..|+|+.+|.+++.
T Consensus 215 i~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~ 254 (290)
T d1rtra_ 215 IKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAE 254 (290)
T ss_dssp HHHHHHHHHHHHCC-------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHH
Confidence 8889888876 4467899999999988753
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.87 E-value=2e+02 Score=20.50 Aligned_cols=23 Identities=13% Similarity=-0.184 Sum_probs=14.9
Q ss_pred hhhHhHHhHHHHHHHHHHHHHHH
Q 046336 72 CVLLGKEKVLPLCVNLMLIGYGG 94 (167)
Q Consensus 72 ~i~lG~~~~~~i~~~ll~~~Y~~ 94 (167)
.=|+|+|++..++..+..+....
T Consensus 83 ~Dr~g~r~~~~~~~~~~~~~~~~ 105 (447)
T d1pw4a_ 83 SDRSNPRVFLPAGLILAAAVMLF 105 (447)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHHHhh
Confidence 34678888887776665554443
No 9
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=12.67 E-value=10 Score=25.16 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=12.8
Q ss_pred HHHhccCCCchhhhhc
Q 046336 51 NGLLKDLPDVEGDKAF 66 (167)
Q Consensus 51 iaIvKDieDieGD~~~ 66 (167)
+|.+|.+-|-|||+.-
T Consensus 8 ~AFI~GLYdAEGDKtg 23 (80)
T d1b24a2 8 IAFIKGLYVAEGDKTL 23 (80)
T ss_dssp HHHHHHHHHHHSCTTC
T ss_pred HHHHHhhhhccccchh
Confidence 5677888899999864
No 10
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.23 E-value=98 Score=21.22 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=22.7
Q ss_pred CCCChhhHHHHHHHhcccCCCCCchhHHHHHHhhhhc
Q 046336 130 DLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFL 166 (167)
Q Consensus 130 dl~sk~si~sFYmfIWk~~~~~~~~LFy~EYll~P~~ 166 (167)
|.++.+.+..|.+-+++ .|.+|++=||.
T Consensus 88 d~~~~~~i~~~~~~v~~---------lYv~~v~NPfy 115 (140)
T d2j3wa1 88 DVRQEDGIKNFFTDVYD---------LYIKFAMNPFY 115 (140)
T ss_dssp SSCCHHHHHHHHHHHHH---------HHHHHHHSTTC
T ss_pred CCCcchHHHHHHHHHHH---------HHHHHhhCccC
Confidence 34566789999999999 56899998874
Done!