BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046339
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 129/457 (28%), Positives = 216/457 (47%), Gaps = 34/457 (7%)
Query: 2 KGLSVTVATPEIAQHQLLKSFTSSKINDCVSD----DIPCLFFSDGF---DLDYNRKSDL 54
+G +T E +LLKS K D +D IP DG + D + D+
Sbjct: 35 RGFHITFVNTEYNHKRLLKS-RGPKAFDGFTDFNFESIP-----DGLTPMEGDGDVSQDV 88
Query: 55 DHYMETIEKAGPGNLSKLIKNHYHDKH-KKLSCIINNPFVPWVVDVAAELGIPCAMLWIQ 113
+++ K +L+ H + ++C++++ + + + A E +P + +
Sbjct: 89 PTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSS 148
Query: 114 -PCSLFSI-YYRFYNKLNPFPTSEN---PNSSVE-----LPWLQTLHTHDLPSFVLPSNP 163
CSL ++ ++R + + P + N +E +P L+ D+ F+ +NP
Sbjct: 149 SACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNP 208
Query: 164 FGSFSRILNDLFQNLNKQYKWVLANSFFELEKEATESMSQLCP--IRXXXXXXXXXXXXQ 221
++ +NK +L N+F ELE + ++S P Q
Sbjct: 209 NDIMLEFFIEVADRVNKDTT-ILLNTFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQ 267
Query: 222 DEKLD-VGVERWKPEDCCLEWLNKQSNSSVVYISFGSLTQLSANQMEVIATALKNIKLPF 280
+LD + WK + CL+WL + SVVY++FGS T ++ Q+ A L N K F
Sbjct: 268 IHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSF 327
Query: 281 LWIVKQSESASSDGEGTLPLWFLEETKNRGLVVSWCPQTKVLAHPALACFVTHCGWSSLL 340
LWI++ G F E +RGL+ SWCPQ KVL HP++ F+THCGW+S
Sbjct: 328 LWIIRPDLVIG--GSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTT 385
Query: 341 ETIVAGVPVIAYPQWSDQPTNAKLVADVFKIGLRLRPSEDGFVGNEELEKCVEEIINGPK 400
E+I AGVP++ +P ++DQPT+ + + + ++IG+ + D V EEL K + E+I G K
Sbjct: 386 ESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI----DTNVKREELAKLINEVIAGDK 441
Query: 401 SEYYKKNAVELKHAARQAVAGGGSSDQNIQLFADEIL 437
+ K+ A+ELK A + GG S N+ ++L
Sbjct: 442 GKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/433 (27%), Positives = 194/433 (44%), Gaps = 31/433 (7%)
Query: 16 HQLLKSFTSSKINDCVSDD--------IPCLFFSDGFDLDYNRKSDLDHYMETIEKAGPG 67
H + F++S+ N + D I SDG Y +E +A P
Sbjct: 37 HAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDISDGVPEGYVFAGRPQEDIELFTRAAPE 96
Query: 68 NLSKLIKNHYHDKHKKLSCIINNPFVPWVVDVAAELGIPCAMLWIQPCSLFSIYYRFYNK 127
+ + + + + +SC++ + F+ + D+AAE+G+ W + S +
Sbjct: 97 SFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEI 156
Query: 128 LNPFPTSENPNSSVEL----PWLQTLHTHDLPSFVLPSNPFGSFSRILNDLFQNLNKQYK 183
S EL P + + DL ++ N FSR+L+ + Q L K
Sbjct: 157 REKIGVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATA 216
Query: 184 WVLANSFFELEKEATESMSQLCPIRXXXXXXXXXXXXQDEKLDVGVERWKPEDCCLEWLN 243
V NSF EL+ T + G CL+WL
Sbjct: 217 -VFINSFEELDDSLTNDLKSKLKTYLNIGPFNLITPPPVVPNTTG---------CLQWLK 266
Query: 244 KQSNSSVVYISFGSLTQLSANQMEVIATALKNIKLPFLWIVKQSESASSDGEGTLPLWFL 303
++ +SVVYISFG++T ++ ++ AL+ ++PF+W ++ LP FL
Sbjct: 267 ERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVH------LPEGFL 320
Query: 304 EETKNRGLVVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAK 363
E+T+ G+VV W PQ +VLAH A+ FVTHCGW+SL E++ GVP+I P + DQ N +
Sbjct: 321 EKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGR 380
Query: 364 LVADVFKIGLRLRPSEDGFVGNEELEKCVEEIINGPKSEYYKKNAVELKHAARQAVAGGG 423
+V DV +IG+R+ E G L C ++I++ K + ++N L+ A +AV G
Sbjct: 381 MVEDVLEIGVRI---EGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKG 437
Query: 424 SSDQNIQLFADEI 436
SS +N D +
Sbjct: 438 SSTENFITLVDLV 450
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 146/267 (54%), Gaps = 20/267 (7%)
Query: 180 KQYKWVLANSFFELEKEATESMSQLCPIRXXXXXXXXXXXXQDEKLDVGVERWK--PEDC 237
K+ + +L N+FFELE A +++ + +++G + K E
Sbjct: 205 KEAEGILVNTFFELEPNAIKALQE-------PGLDKPPVYPVGPLVNIGKQEAKQTEESE 257
Query: 238 CLEWLNKQSNSSVVYISFGSLTQLSANQMEVIATALKNIKLPFLWIVKQSES-------- 289
CL+WL+ Q SV+Y+SFGS L+ Q+ +A L + + FLW+++
Sbjct: 258 CLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFD 317
Query: 290 --ASSDGEGTLPLWFLEETKNRGLVVS-WCPQTKVLAHPALACFVTHCGWSSLLETIVAG 346
+ +D LP FLE TK RG V+ W PQ +VLAHP+ F+THCGW+S LE++V+G
Sbjct: 318 SHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSG 377
Query: 347 VPVIAYPQWSDQPTNAKLVADVFKIGLRLRPSEDGFVGNEELEKCVEEIINGPKSEYYKK 406
+P+IA+P +++Q NA L+++ + LR R +DG V EE+ + V+ ++ G + + +
Sbjct: 378 IPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRN 437
Query: 407 NAVELKHAARQAVAGGGSSDQNIQLFA 433
ELK AA + + G+S + + L A
Sbjct: 438 KMKELKEAACRVLKDDGTSTKALSLVA 464
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 175/370 (47%), Gaps = 32/370 (8%)
Query: 63 KAGPGNLSKLIKNHYHDKHKKLSCIINNPFVPWVVDVAAELGIPCAMLWIQ-PCSLFSIY 121
KA N +I + K ++C++ + F + D+A E+ LW P SL +
Sbjct: 97 KAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLT-- 154
Query: 122 YRFYNKLNPFPTSENPNSSVELPWLQTLHTHDLPSF-VLPSNPFGSFSRILNDLFQNLNK 180
Y L E S HD+ S VLP P S + + ++++
Sbjct: 155 -HVYTDL----IREKTGSK---------EVHDVKSIDVLPGFPELKASDLPEGVIKDIDV 200
Query: 181 QYKWVLANSFFELEKE---ATESMSQLCPIRXXXXXXXXXXXXQDEKLDVGVERWKPED- 236
+ +L EL + A S + + P+ ++ + K D
Sbjct: 201 PFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVSDE 260
Query: 237 -CCLEWLNKQSNSSVVYISFGSLTQLSANQMEVIATALKNIKLPFLWIVKQSESASSDGE 295
CLEWL++ NSSVVYISFGS+ +++ +A +L+ PF+W S D +
Sbjct: 261 HGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIW------SFRGDPK 314
Query: 296 GTLPLWFLEETKNRGLVVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQW 355
LP FLE TK +G +V+W PQ ++L H ++ F+TH GW+S+LE IV GVP+I+ P +
Sbjct: 315 EKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFF 374
Query: 356 SDQPTNAKLVADVFKIGLRLRPSEDGFVGNEELEKCVEEIINGPKSEYYKKNAVELKHAA 415
DQ N L V +IG+ + ++G + E ++K +E ++ K ++ V+LK +A
Sbjct: 375 GDQGLNTILTESVLEIGVGV---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESA 431
Query: 416 RQAVAGGGSS 425
+AV G+S
Sbjct: 432 FKAVEQNGTS 441
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 182/371 (49%), Gaps = 34/371 (9%)
Query: 83 KLSCIINNPFVPWVVDVAAELGIPCAMLWIQPCSLFSIYYRFYNKL--NPFPTSENPNSS 140
K+ ++ + F ++DV E GIP + S+ N+ F S+ +
Sbjct: 114 KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQL 173
Query: 141 VELPWLQTLHTHDLPSFVLPSNPFGSFSRILNDLFQNLNKQY---KWVLANSFFELEKEA 197
+ +P + ++ +PS VLP F + + L +++ K ++ N+F +LE+ +
Sbjct: 174 LNIPGI----SNQVPSNVLPDACFNKDGGYIA--YYKLAERFRDTKGIIVNTFSDLEQSS 227
Query: 198 TESM---SQLCPIRXXXXXXXXXXXXQDEKLDVGVERWKPEDCCLEWLNKQSNSSVVYIS 254
+++ + P + KLD D L+WL++Q + SVV++
Sbjct: 228 IDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQA-----QHDLILKWLDEQPDKSVVFLC 282
Query: 255 FGSL-TQLSANQMEVIATALKNIKLPFLWIVKQSESASSDGEGTLPLWFLE--ETKNRGL 311
FGS+ +Q+ IA LK+ + FLW ++S + P FLE E + +G+
Sbjct: 283 FGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGM 335
Query: 312 VVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLVADVFKI 371
+ W PQ +VLAH A+ FV+HCGW+S+LE++ GVP++ +P +++Q NA + + +
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 372 GLRLR---PSEDGFVGNEELEKCVEEIINGPKSEYYKKNAVELKHAARQAVAGGGSSDQN 428
GL LR V EE+EK ++++++ K K E+K +R AV GGSS +
Sbjct: 396 GLGLRVDYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLIS 453
Query: 429 IQLFADEILGN 439
+ D+I G+
Sbjct: 454 VGKLIDDITGS 464
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 181/370 (48%), Gaps = 34/370 (9%)
Query: 83 KLSCIINNPFVPWVVDVAAELGIPCAMLWIQPCSLFSIYYRFYNKL--NPFPTSENPNSS 140
K+ ++ + F ++DV E GIP + S+ N+ F S+ +
Sbjct: 114 KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQL 173
Query: 141 VELPWLQTLHTHDLPSFVLPSNPFGSFSRILNDLFQNLNKQY---KWVLANSFFELEKEA 197
+ +P + ++ +PS VLP F + + L +++ K ++ N+F +LE+ +
Sbjct: 174 LNIPGI----SNQVPSNVLPDACFNKDGGYIA--YYKLAERFRDTKGIIVNTFSDLEQSS 227
Query: 198 TESM---SQLCPIRXXXXXXXXXXXXQDEKLDVGVERWKPEDCCLEWLNKQSNSSVVYIS 254
+++ + P + KLD D L+WL++Q + SVV++
Sbjct: 228 IDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQA-----QHDLILKWLDEQPDKSVVFLC 282
Query: 255 FGSL-TQLSANQMEVIATALKNIKLPFLWIVKQSESASSDGEGTLPLWFLE--ETKNRGL 311
FGS+ +Q+ IA LK+ + FLW ++S + P FLE E + +G+
Sbjct: 283 FGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGM 335
Query: 312 VVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLVADVFKI 371
+ W PQ +VLAH A+ FV+HCGW+S+LE++ GVP++ +P +++Q NA + + +
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 372 GLRLR---PSEDGFVGNEELEKCVEEIINGPKSEYYKKNAVELKHAARQAVAGGGSSDQN 428
GL LR V EE+EK ++++++ K K E+K +R AV GGSS +
Sbjct: 396 GLGLRVDYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLIS 453
Query: 429 IQLFADEILG 438
+ D+I G
Sbjct: 454 VGKLIDDITG 463
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 240 EWLNKQSNSSVVYISFGS-LTQLSANQMEVIATALKNIKLPFLWIVKQSESASSDGEGTL 298
+++ + VV S GS ++ + + VIA+AL I LW +G
Sbjct: 13 DFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRF----------DGNK 62
Query: 299 PLWFLEETKNRGLVVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQ 358
P T+ + W PQ +L HP F+TH G + + E I G+P + P ++DQ
Sbjct: 63 PDTLGLNTR----LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
Query: 359 PTN---AKLVADVFKIGLRLRPSEDGFVGNEELEKCVEEIINGPKSEYYKKNAVEL 411
P N K ++ S D L ++ +IN P YK+N +L
Sbjct: 119 PDNIAHXKARGAAVRVDFNTXSSTD-------LLNALKRVINDPS---YKENVXKL 164
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 312 VVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLVADVFKI 371
V W PQ +L + F+TH G S +E + VP++A PQ ++Q NA+ + ++
Sbjct: 309 VHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAER---IVEL 363
Query: 372 GLRLRPSEDGFVGNEELEKCVEEIINGP 399
GL D V E+L + V + + P
Sbjct: 364 GLGRHIPRDQ-VTAEKLREAVLAVASDP 390
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 241 WLNKQSNSSVVYISFGS-LTQLSANQMEVIATALKNIKLPFLWIVKQSESASSDGEGTLP 299
W VV +S GS T+ A E + A N LP +V Q + E
Sbjct: 225 WQRPAGAEKVVLVSLGSAFTKQPAFYRECV-RAFGN--LPGWHLVLQIGRKVTPAE---- 277
Query: 300 LWFLEETKNRGLVVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQP 359
L E + V W PQ +L L FVTH G E + P+IA PQ DQ
Sbjct: 278 ---LGELPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQF 332
Query: 360 TNAKLV 365
NA ++
Sbjct: 333 GNADML 338
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 241 WLNKQSNSS-VVYISFGSLTQLSANQMEVIATALKNIK-LPFLWIVKQSESASSDGEGTL 298
WL+ + + +VY++ G+ S +EV+ A+ + L +V S G G +
Sbjct: 234 WLSSRDTARPLVYLTLGTS---SGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEV 290
Query: 299 PLWFLEETKNRGLVVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSD 357
P E SW PQ +L H + V H G + L + AGVP +++P D
Sbjct: 291 PANVRLE--------SWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGD 339
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 315 WCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLVADVFKIGLR 374
W P VLAH A AC +TH ++LE AGVP++ P ++ + + +G
Sbjct: 288 WIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 375 LRPSE 379
LRP +
Sbjct: 346 LRPDQ 350
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 315 WCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLV 365
W P KVL A C VTH G +L E + G P++ PQ D A+ V
Sbjct: 304 WVPHVKVLEQ-ATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV 352
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 315 WCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLV 365
W P KVL A C VTH G +L E + G P++ PQ D A+ V
Sbjct: 304 WVPHVKVLEQ-ATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV 352
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 312 VVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLVADVFKI 371
VV W P +L + H G +LL + AGVP P S Q TN ++ I
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTG-LGI 348
Query: 372 GLRLRPSEDGFVGNEELEKCVEE 394
G +E G +G E+ + +++
Sbjct: 349 GFD---AEAGSLGAEQCRRLLDD 368
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 312 VVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLVADVFKI 371
VV W P +L + H G +LL + AGVP P S Q TN ++ I
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTG-LGI 348
Query: 372 GLRLRPSEDGFVGNEELEKCVEE 394
G +E G +G E+ + +++
Sbjct: 349 GFD---AEAGSLGAEQCRRLLDD 368
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 327 LACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLVADV 368
+A V H G + AG P + PQ +DQP A VAD+
Sbjct: 285 VAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADL 326
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 313 VSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLVADVFKIG 372
V W P V P V H G S L + AGVP + P+ S A+ VAD +
Sbjct: 268 VGWTPLDVV--APTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVAD-YGAA 324
Query: 373 LRLRPSEDGFVGNEELEKCVEEIINGPKSEYYKKNAVELKH 413
+ L P ED E + +E+ + Y + A +L
Sbjct: 325 IALLPGED---STEAIADSCQELQ---AKDTYARRAQDLSR 359
>pdb|1GKS|A Chain A, Ectothiorhodospira Halophila Cytochrome C551 (Reduced),
Nmr, 37 Structures
Length = 78
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 337 SSLLETIVAGVPVIAYPQ-WSDQPTNAKLVADVFKIGLRLRPSEDGFVGNEELEKCVEEI 395
SS + VAG P + P+ W+D+P++ + + G P+ DG E+L K +E +
Sbjct: 15 SSCHDRGVAGAPELNAPEDWADRPSSVDELVESTLAGKGAMPAYDGRADREDLVKAIEYM 74
Query: 396 IN 397
++
Sbjct: 75 LS 76
>pdb|4F53|A Chain A, Crystal Structure Of A Susd Homolog (Bacova_04803) From
Bacteroides Ovatus Atcc 8483 At 2.25 A Resolution
pdb|4F53|B Chain B, Crystal Structure Of A Susd Homolog (Bacova_04803) From
Bacteroides Ovatus Atcc 8483 At 2.25 A Resolution
Length = 520
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 344 VAGVPVIAYPQWSDQPTNAKLVADVFKIGLRLRPSEDGFVGNEELEKCVEEIINGPKSEY 403
V I P S Q AK + D+ I L G GN+ + I NG S +
Sbjct: 139 VGAANAIKSPYDSQQAVYAKXLEDLDNIITVL-----GKFGNQSFSSSADRIYNGNTSAW 193
Query: 404 YK-KNAVELKHAARQA-VAGGGSSDQNIQLFADE 435
YK N+++L+ A R VAG + + Q A+E
Sbjct: 194 YKFANSLKLRXAXRTCYVAGFNVNGKTSQQLAEE 227
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 241 WLNKQSNSSVVYISFGSLTQLSANQMEVIATALKNIKL--PFLWIVKQSESASSDGEGTL 298
+ NK + VYI+FG L +Q E++ TA++N L + SE+A + L
Sbjct: 255 FYNKVVTEADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKE----L 310
Query: 299 PLWFLEETKNRGLVVS 314
+ LE+ N+ L ++
Sbjct: 311 SYYSLEDLNNKYLYIA 326
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 241 WLNKQSNSSVVYISFGSLTQLSANQMEVIATALKNIKL--PFLWIVKQSESASSDGEGTL 298
+ NK + VYI+FG L +Q E++ TA++N L + SE+A + L
Sbjct: 255 FYNKVVTEADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKE----L 310
Query: 299 PLWFLEETKNRGLVVS 314
+ LE+ N+ L ++
Sbjct: 311 SYYSLEDLNNKYLYIA 326
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 241 WLNKQSNSSVVYISFGSLTQLSANQMEVIATALKNIKL--PFLWIVKQSESASSDGEGTL 298
+ NK + VYI+FG L +Q E++ TA++N L + SE+A + L
Sbjct: 237 FYNKVVTEADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKE----L 292
Query: 299 PLWFLEETKNRGLVVS 314
+ LE+ N+ L ++
Sbjct: 293 SYYSLEDLNNKYLYIA 308
>pdb|3MYR|A Chain A, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|C Chain C, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|E Chain E, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|G Chain G, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
Length = 269
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 249 SVVYISFGSLTQLSANQMEVIATALKNIKLPFLWIVKQS--ESASSDGEGTLPLWFLEET 306
SV+++SF T + + A L+++ L F+ + ++AS + L ++E
Sbjct: 5 SVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDEN 64
Query: 307 KNRGLVVSWCPQTKVLAHPALACFVTHCGWSSLLETIVAGVPVIA---------YPQWSD 357
+ + LV+ A+P + H +S L+ET+ VIA PQ
Sbjct: 65 RGQYLVIVDGSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARP 124
Query: 358 QPTNAKLVADVFK 370
PT A V D+ +
Sbjct: 125 NPTGAMSVMDLVR 137
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 27 INDCVSDDIPCLFFSDGF--DLDYNRKSD--------LDHYMETIEKAGPGNLSKLIKNH 76
+ +CV +DIPC DG L NRK D + +T K G NL+ K H
Sbjct: 230 VYECVQEDIPCTLICDGAASSLXLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFH 289
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 333 HCGWSSLLETIVAGVPVIAYPQWSDQPTNAKLVADVFKIGLRLRPSEDGFVGNEELEKCV 392
HCGW L+ I G I P+ +N K D+ K+ LR R E +
Sbjct: 406 HCGWLGLMSGIATGADYIFIPERPPSESNWK--DDLKKVCLRHREKGRRKTTVIVAEGAI 463
Query: 393 EEIINGPKSEYYKKNAVELKHAAR 416
++ +N SE K VE+ R
Sbjct: 464 DDQLNPITSEEVKDVLVEIGLDTR 487
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,934,486
Number of Sequences: 62578
Number of extensions: 575034
Number of successful extensions: 1384
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1355
Number of HSP's gapped (non-prelim): 29
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)