BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046340
(715 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 161/558 (28%), Positives = 245/558 (43%), Gaps = 60/558 (10%)
Query: 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95
+G+ S L+ LD+ N + + I L++L + +N F G IP +L+ L L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSL 273
Query: 96 GVNELVGKVPGKL-GSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFP- 153
N+ G++P L G+ L L + N G +P FG+ S LE L+ ++N F G+ P
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 154 ETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEV 213
+TL +++ ++ + N+ SGE+P S+ NLS+ +L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSA------------------------SLLT 369
Query: 214 LNVGGNQFTGPI-PASISNASN-LMRLTIAKNGFSGRV-PSLENLYKLQWVSISHNHLGN 270
L++ N F+GPI P N N L L + NGF+G++ P+L N +L + +S N+L
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 271 YGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPS 330
+SL + S+L L++ N G +P+ + + T L LI+ N L G IPS
Sbjct: 430 -------TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPS 481
Query: 331 XXXXXXXXXXXXXXXXQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILA 390
+ TG+IP IG L L L L N F G IP+ +G+ SL L
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 391 FDENMLEGSIPSSLGK-----CQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQL 445
+ N+ G+IP+++ K + E G +L + + QL
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 446 N----------------GSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMK 489
N G P F ++ +D+S N LSG IP +GS L L +
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 490 GNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPVKG 549
N G+IP LRG+ LDLS N L GRIP+ S+N+ G +P G
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
Query: 550 VFSNSSAISLDGNDNLCG 567
F N LCG
Sbjct: 722 QFETFPPAKFLNNPGLCG 739
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 139/490 (28%), Positives = 204/490 (41%), Gaps = 90/490 (18%)
Query: 39 LSFLRVLDLKNNSFRDEIPQEIGYLF-----RLQILALHNNTFGGQIPDNISHCVNLESL 93
L+ L VLDL NS +G++ L+ LA+ N G + ++S CVNLE
Sbjct: 147 LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLE-- 200
Query: 94 GLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFP 153
L V N+ S IP G+ S+L+ L + N+ G F
Sbjct: 201 ----------------------FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 237
Query: 154 ETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEV 213
+S ++ ++ N+ G IP L SL + N+ G +P L L
Sbjct: 238 RAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 295
Query: 214 LNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGE 273
L++ GN F G +P + S L L ++ N FSG +P
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP----------------------- 332
Query: 274 KDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNI-PSXX 332
+++L+ L++L++S N F G LPE++ NLS L L + +N G I P+
Sbjct: 333 ------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 333 XXXXXXXXXXXXXXQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFD 392
Q P + LQ L L N F G+IP ++ N + L L
Sbjct: 387 ------------------QNPK-----NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 423
Query: 393 ENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPN 452
N L G+IPSSLG G IP E++ + +L + L N L G +P
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI-LDFNDLTGEIPSG 482
Query: 453 FGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDL 512
NL I +S N+L+GEIP +G L L + N F GNIP+ R + LDL
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 513 SRNNLSGRIP 522
+ N +G IP
Sbjct: 543 NTNLFNGTIP 552
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 135/474 (28%), Positives = 212/474 (44%), Gaps = 38/474 (8%)
Query: 112 SKLWILSVHYNSLSGEIPS--SFGNLSSLEFLSAAANQFVGQFPETLS---ELKMMRYIS 166
+ L L + NSLSG + + S G+ S L+FL+ ++N FP +S +L + +
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 154
Query: 167 FGENKLSGE--IPFSIYN-LSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTG 223
N +SG + + + + L H N++ G + D+ + NLE L+V N F+
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV-NLEFLDVSSNNFST 211
Query: 224 PIPASISNASNLMRLTIAKNGFSGRVP-SLENLYKLQWVSISHNHLGNYGEKDNLEFVNS 282
IP + + S L L I+ N SG ++ +L+ ++IS N +FV
Sbjct: 212 GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-----------QFVGP 259
Query: 283 L--VNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSXXXXXXXXXX 340
+ + L+ L +++N F G +P+ + L L + N +G +P
Sbjct: 260 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 341 XXXXXXQFTGQIP-GSIGDLHKLQWLMLPANEFWGEIPSSIGNLT-SLAILAFDENMLEG 398
F+G++P ++ + L+ L L NEF GE+P S+ NL+ SL L N G
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 399 SIPSSLGKCQXXXXXXXXXXXX----XGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFG 454
I +L CQ G IP + S L + L LS N L+G++P + G
Sbjct: 380 PILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGTIPSSLG 436
Query: 455 ILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSR 514
L L + + N L GEIP L LE L++ N G IPS S+ + + LS
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 515 NNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPVKGVFSNSSAISLDGNDNLCGG 568
N L+G IPK+ S+N F G +P + + S I LD N NL G
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 549
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 161/558 (28%), Positives = 245/558 (43%), Gaps = 60/558 (10%)
Query: 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95
+G+ S L+ LD+ N + + I L++L + +N F G IP +L+ L L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSL 276
Query: 96 GVNELVGKVPGKL-GSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFP- 153
N+ G++P L G+ L L + N G +P FG+ S LE L+ ++N F G+ P
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 154 ETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEV 213
+TL +++ ++ + N+ SGE+P S+ NLS+ +L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSA------------------------SLLT 372
Query: 214 LNVGGNQFTGPI-PASISNASN-LMRLTIAKNGFSGRV-PSLENLYKLQWVSISHNHLGN 270
L++ N F+GPI P N N L L + NGF+G++ P+L N +L + +S N+L
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 271 YGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPS 330
+SL + S+L L++ N G +P+ + + T L LI+ N L G IPS
Sbjct: 433 -------TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPS 484
Query: 331 XXXXXXXXXXXXXXXXQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILA 390
+ TG+IP IG L L L L N F G IP+ +G+ SL L
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 391 FDENMLEGSIPSSLGK-----CQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQL 445
+ N+ G+IP+++ K + E G +L + + QL
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 446 N----------------GSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMK 489
N G P F ++ +D+S N LSG IP +GS L L +
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 490 GNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPVKG 549
N G+IP LRG+ LDLS N L GRIP+ S+N+ G +P G
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
Query: 550 VFSNSSAISLDGNDNLCG 567
F N LCG
Sbjct: 725 QFETFPPAKFLNNPGLCG 742
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 139/490 (28%), Positives = 204/490 (41%), Gaps = 90/490 (18%)
Query: 39 LSFLRVLDLKNNSFRDEIPQEIGYLF-----RLQILALHNNTFGGQIPDNISHCVNLESL 93
L+ L VLDL NS +G++ L+ LA+ N G + ++S CVNLE
Sbjct: 150 LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLE-- 203
Query: 94 GLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFP 153
L V N+ S IP G+ S+L+ L + N+ G F
Sbjct: 204 ----------------------FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240
Query: 154 ETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEV 213
+S ++ ++ N+ G IP L SL + N+ G +P L L
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 214 LNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGE 273
L++ GN F G +P + S L L ++ N FSG +P
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP----------------------- 335
Query: 274 KDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNI-PSXX 332
+++L+ L++L++S N F G LPE++ NLS L L + +N G I P+
Sbjct: 336 ------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 333 XXXXXXXXXXXXXXQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFD 392
Q P + LQ L L N F G+IP ++ N + L L
Sbjct: 390 ------------------QNPK-----NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 393 ENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPN 452
N L G+IPSSLG G IP E++ + +L + L N L G +P
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI-LDFNDLTGEIPSG 485
Query: 453 FGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDL 512
NL I +S N+L+GEIP +G L L + N F GNIP+ R + LDL
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 513 SRNNLSGRIP 522
+ N +G IP
Sbjct: 546 NTNLFNGTIP 555
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/474 (28%), Positives = 212/474 (44%), Gaps = 38/474 (8%)
Query: 112 SKLWILSVHYNSLSGEIPS--SFGNLSSLEFLSAAANQFVGQFPETLS---ELKMMRYIS 166
+ L L + NSLSG + + S G+ S L+FL+ ++N FP +S +L + +
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 157
Query: 167 FGENKLSGE--IPFSIYN-LSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTG 223
N +SG + + + + L H N++ G + D+ + NLE L+V N F+
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV-NLEFLDVSSNNFST 214
Query: 224 PIPASISNASNLMRLTIAKNGFSGRVP-SLENLYKLQWVSISHNHLGNYGEKDNLEFVNS 282
IP + + S L L I+ N SG ++ +L+ ++IS N +FV
Sbjct: 215 GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-----------QFVGP 262
Query: 283 L--VNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSXXXXXXXXXX 340
+ + L+ L +++N F G +P+ + L L + N +G +P
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 341 XXXXXXQFTGQIP-GSIGDLHKLQWLMLPANEFWGEIPSSIGNLT-SLAILAFDENMLEG 398
F+G++P ++ + L+ L L NEF GE+P S+ NL+ SL L N G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 399 SIPSSLGKCQXXXXXXXXXXXX----XGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFG 454
I +L CQ G IP + S L + L LS N L+G++P + G
Sbjct: 383 PILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGTIPSSLG 439
Query: 455 ILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSR 514
L L + + N L GEIP L LE L++ N G IPS S+ + + LS
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 515 NNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPVKGVFSNSSAISLDGNDNLCGG 568
N L+G IPK+ S+N F G +P + + S I LD N NL G
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 552
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 91/223 (40%), Gaps = 8/223 (3%)
Query: 348 FTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKC 407
G IP +I L +L +L + G IP + + +L L F N L G++P S+
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 408 QXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISEN 467
G IP S L + +S+N+L G +PP F L NL +D+S N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207
Query: 468 KLSGEIPNSLGSCIRLEELVMKGN---FFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKY 524
L G+ GS +++ + N F G + S + + LDL N + G +P+
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQG 263
Query: 525 FEXXXXXXXXXXSSNHFEGEVPVKGVFSNSSAISLDGNDNLCG 567
S N+ GE+P G + N LCG
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 96/222 (43%), Gaps = 4/222 (1%)
Query: 303 LPEAVGNLSTRLRKLIVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGQIPGSIGDLHKL 362
+P ++ NL I G N L G IP +G IP + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 363 QWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGK-CQXXXXXXXXXXXXX 421
L N G +P SI +L +L + FD N + G+IP S G +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
G IP L+ ++DLS+N L G FG KN I +++N L+ ++ +G
Sbjct: 188 GKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPK 523
L L ++ N G +P + L+ + +L++S NNL G IP+
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 5/233 (2%)
Query: 36 IGNLSFLRVLDLKN-NSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLG 94
+ NL +L L + N+ IP I L +L L + + G IPD +S L +L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 95 LGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSL-EFLSAAANQFVGQFP 153
N L G +P + SL L ++ N +SG IP S+G+ S L ++ + N+ G+ P
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 154 ETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEV 213
T + L + ++ N L G+ + + + N L L +G + NL
Sbjct: 192 PTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS-KNLNG 248
Query: 214 LNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHN 266
L++ N+ G +P ++ L L ++ N G +P NL + + ++N
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 17/219 (7%)
Query: 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPET 155
G+N LVG +P + L++L L + + ++SG IP + +L L + N G P +
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 156 LSELKMMRYISFGENKLSGEIPFSIYNLSSL-THFYFPFNQLQGSLPSDLGFTLPNLEVL 214
+S L + I+F N++SG IP S + S L T N+L G +P F NL +
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLNLAFV 202
Query: 215 NVGGNQFTGPIPASISNASNLMRLTIAKNGFS---GRVPSLENLYKLQWVSISHNHLGNY 271
++ N G + N ++ +AKN + G+V +NL L + +N + Y
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD---LRNNRI--Y 257
Query: 272 GEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNL 310
G L L L +S NN G +P+ GNL
Sbjct: 258 G-----TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 101/277 (36%), Gaps = 61/277 (22%)
Query: 200 LPSDLGFTLPNLEVLNVGG-NQFTGPIPASISNASNLMRLTIAKNGFSGRVPS-LENLYK 257
+PS L LP L L +GG N GPIP +I+ + L L I SG +P L +
Sbjct: 68 IPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 258 LQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKL 317
L + S+N L S+ + L + N G +P++ G+ S +
Sbjct: 127 LVTLDFSYNALSG-------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 318 IVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGQIPGSIGDLHKLQWLMLPANEFWGEIP 377
+ N+L TG+IP + +L+
Sbjct: 180 TISRNRL------------------------TGKIPPTFANLN----------------- 198
Query: 378 SSIGNLTSLAILAFDENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIY 437
LA + NMLEG G + + +GLS
Sbjct: 199 --------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNG 248
Query: 438 LDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIP 474
LDL N++ G+LP LK L +++S N L GEIP
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 3/146 (2%)
Query: 424 IPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRL 483
IP+ + L L+ N L G +PP L L + I+ +SG IP+ L L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 484 EELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPK-YFEXXXXXXXXXXSSNHFE 542
L N G +P S SSL + + N +SG IP Y S N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 543 GEVPVKGVFSNSSAISLDGNDNLCGG 568
G++P F+N + +D + N+ G
Sbjct: 188 GKIP--PTFANLNLAFVDLSRNMLEG 211
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 97/248 (39%), Gaps = 40/248 (16%)
Query: 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95
+ NL+ L LD+ +N D + L L+ L NN P + NL+ L L
Sbjct: 172 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 227
Query: 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPET 155
N+L K G L SL+ L L + N +S P L+ L L ANQ P
Sbjct: 228 NGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 281
Query: 156 LSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLN 215
L+ L + + EN+L P S NL +LT+ FN + P
Sbjct: 282 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP-------------- 325
Query: 216 VGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKD 275
+S+ + L RL A N S V SL NL + W+S HN + +
Sbjct: 326 -------------VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTPLA 371
Query: 276 NLEFVNSL 283
NL + L
Sbjct: 372 NLTRITQL 379
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 97/248 (39%), Gaps = 40/248 (16%)
Query: 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95
+ NL+ L LD+ +N D + L L+ L NN P + NL+ L L
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPET 155
N+L K G L SL+ L L + N +S P L+ L L ANQ P
Sbjct: 225 NGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 156 LSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLN 215
L+ L + + EN+L P S NL +LT+ FN + P
Sbjct: 279 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP-------------- 322
Query: 216 VGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKD 275
+S+ + L RL + N S V SL NL + W+S HN + +
Sbjct: 323 -------------VSSLTKLQRLFFSNNKVSD-VSSLANLTNINWLSAGHNQISDLTPLA 368
Query: 276 NLEFVNSL 283
NL + L
Sbjct: 369 NLTRITQL 376
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 97/248 (39%), Gaps = 40/248 (16%)
Query: 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95
+ NL+ L LD+ +N D + L L+ L NN P + NL+ L L
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPET 155
N+L K G L SL+ L L + N +S P L+ L L ANQ P
Sbjct: 224 NGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 277
Query: 156 LSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLN 215
L+ L + + EN+L P S NL +LT+ FN + P
Sbjct: 278 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP-------------- 321
Query: 216 VGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKD 275
+S+ + L RL + N S V SL NL + W+S HN + +
Sbjct: 322 -------------VSSLTKLQRLFFSNNKVSD-VSSLANLTNINWLSAGHNQISDLTPLA 367
Query: 276 NLEFVNSL 283
NL + L
Sbjct: 368 NLTRITQL 375
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 96/248 (38%), Gaps = 40/248 (16%)
Query: 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95
+ NL+ L LD+ +N D + L L+ L NN P + NL+ L L
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPET 155
N+L K G L SL+ L L + N +S P L+ L L ANQ P
Sbjct: 224 NGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 277
Query: 156 LSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLN 215
L+ L + + EN+L P S NL +LT+ FN + P
Sbjct: 278 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP-------------- 321
Query: 216 VGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKD 275
+S+ + L RL N S V SL NL + W+S HN + +
Sbjct: 322 -------------VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTPLA 367
Query: 276 NLEFVNSL 283
NL + L
Sbjct: 368 NLTRITQL 375
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 96/248 (38%), Gaps = 40/248 (16%)
Query: 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95
+ NL+ L LD+ +N D + L L+ L NN P + NL+ L L
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228
Query: 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPET 155
N+L K G L SL+ L L + N +S P L+ L L ANQ P
Sbjct: 229 NGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 282
Query: 156 LSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLN 215
L+ L + + EN+L P S NL +LT+ FN + P
Sbjct: 283 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP-------------- 326
Query: 216 VGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKD 275
+S+ + L RL N S V SL NL + W+S HN + +
Sbjct: 327 -------------VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTPLA 372
Query: 276 NLEFVNSL 283
NL + L
Sbjct: 373 NLTRITQL 380
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 96/248 (38%), Gaps = 40/248 (16%)
Query: 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95
+ NL+ L LD+ +N D + L L+ L NN P + NL+ L L
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPET 155
N+L K G L SL+ L L + N +S P L+ L L ANQ P
Sbjct: 225 NGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 156 LSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLN 215
L+ L + + EN+L P S NL +LT+ FN + P
Sbjct: 279 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP-------------- 322
Query: 216 VGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKD 275
+S+ + L RL N S V SL NL + W+S HN + +
Sbjct: 323 -------------VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTPLA 368
Query: 276 NLEFVNSL 283
NL + L
Sbjct: 369 NLTRITQL 376
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 96/248 (38%), Gaps = 40/248 (16%)
Query: 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95
+ NL+ L LD+ +N D + L L+ L NN P + NL+ L L
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPET 155
N+L K G L SL+ L L + N +S P L+ L L ANQ P
Sbjct: 225 NGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 156 LSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLN 215
L+ L + + EN+L P S NL +LT+ FN + P
Sbjct: 279 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP-------------- 322
Query: 216 VGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKD 275
+S+ + L RL N S V SL NL + W+S HN + +
Sbjct: 323 -------------VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTPLA 368
Query: 276 NLEFVNSL 283
NL + L
Sbjct: 369 NLTRITQL 376
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 67 QILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVP-GKLGSLSKLWILSVHYNSLS 125
QIL LH+N P +NL+ L LG N+L G +P G SL++L +L + N L+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 126 GEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYN-LS 184
+ F L L+ L N+ + P + L + +++ +N+L IP ++ LS
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLS 159
Query: 185 SLTHFYF 191
SLTH Y
Sbjct: 160 SLTHAYL 166
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 169 ENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPAS 228
+N+++ P +L +L Y NQL G+LP + +L L VL++G NQ T A
Sbjct: 49 DNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107
Query: 229 ISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHL 268
+L L + N + +E L L +++ N L
Sbjct: 108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 290 ELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFT 349
++L + DN + P +L L++L +G+NQL G +P
Sbjct: 43 QILYLHDNQITKLEPGVFDSL-INLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL 100
Query: 350 GQIPGSIGD-LHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIP 401
+P ++ D L L+ L + N+ E+P I LT L LA D+N L+ SIP
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIP 151
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 626 PSALLASVLRVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH 685
P L + R S + L A+D FS +N++G G FG VYKG L TLVAVK L +
Sbjct: 18 PEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADG---TLVAVKRLKEER 74
Query: 686 -RGASKSFMAQCQALRSVRHRNLVKIITSC 714
+G F + + + HRNL+++ C
Sbjct: 75 XQGGELQFQTEVEMISMAVHRNLLRLRGFC 104
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 626 PSALLASVLRVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH 685
P L + R S + L A+D F +N++G G FG VYKG L LVAVK L +
Sbjct: 10 PEVHLGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADG---XLVAVKRLKEER 66
Query: 686 -RGASKSFMAQCQALRSVRHRNLVKIITSC 714
+G F + + + HRNL+++ C
Sbjct: 67 TQGGELQFQTEVEMISMAVHRNLLRLRGFC 96
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 111 LSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGEN 170
L+KL L++ YN L F +L+ L L A NQ L + + G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 171 KLSGEIPFSIYN-LSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASI 229
+L +P +++ L+ L NQLQ S+P+ L NL+ L++ NQ +
Sbjct: 118 QLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 230 SNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGN 270
L +T+ N F E LY QW+ + N + +
Sbjct: 176 DRLGKLQTITLFGNQFD--CSRCETLYLSQWIRENSNKVKD 214
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%)
Query: 63 LFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYN 122
L L L L NN H L+ L LG N+L G L+KL L ++ N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 123 SLSGEIPSSFGNLSSLEFLSAAANQF 148
L +F L++L+ LS + NQ
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 8/150 (5%)
Query: 430 GLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMK 489
GL+ L+ +L+L NQL F L LG + ++ N+L+ +L++L +
Sbjct: 57 GLTKLT-WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 490 GNFFQGNIPSS-FSSLRGMQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPVK 548
GN + ++PS F L ++ L L+ N L F+ S+N + VP
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VP-H 172
Query: 549 GVFS---NSSAISLDGNDNLCGGISELHLS 575
G F I+L GN C L+LS
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCETLYLS 202
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 3/135 (2%)
Query: 38 NLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGV 97
+L+ L L L NN +L +L L L N L+ L L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 98 NELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLS 157
N+L G L+ L LS+ N L +F L L+ ++ NQF ETL
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLY 200
Query: 158 ELKMMRYISFGENKL 172
+ ++I NK+
Sbjct: 201 ---LSQWIRENSNKV 212
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 126/288 (43%), Gaps = 45/288 (15%)
Query: 58 QEIGYLFRLQILALHNNTFGGQIPD--NISHCVNLESLGLGVNELVGKVPGKLGSLSKLW 115
Q I YL L+ L L+ G QI D +S+ V L +L +G N++ L +L+ L
Sbjct: 60 QGIEYLTNLEYLNLN----GNQITDISPLSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113
Query: 116 ILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGE 175
L ++ +++S P NL+ L+ AN + LS + Y++ E+K+
Sbjct: 114 ELYLNEDNISDISP--LANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDV 170
Query: 176 IPFSIYNLSSLTHFYFPFNQLQ-----GSLPSDLGFT--------------LPNLEVLNV 216
P I NL+ L +NQ++ SL S FT L L +
Sbjct: 171 TP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKI 228
Query: 217 GGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDN 276
G N+ T P ++N S L L I N S + ++++L KL+ +++ N + + +N
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKXLNVGSNQISDISVLNN 285
Query: 277 LEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQL 324
L +NSL +++N G E +G L T L L + N +
Sbjct: 286 LSQLNSLF---------LNNNQLGNEDXEVIGGL-TNLTTLFLSQNHI 323
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 111 LSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGEN 170
L+KL L++ YN L F +L+ L L A NQ L + + G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 171 KLSGEIPFSIYN-LSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASI 229
+L +P +++ L+ L NQLQ S+P+ L NL+ L++ NQ +
Sbjct: 118 QLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 230 SNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGN 270
L +T+ N F E LY QW+ + N + +
Sbjct: 176 DRLGKLQTITLFGNQFD--CSRCEILYLSQWIRENSNKVKD 214
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%)
Query: 63 LFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYN 122
L L L L NN H L+ L LG N+L G L+KL L ++ N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 123 SLSGEIPSSFGNLSSLEFLSAAANQF 148
L +F L++L+ LS + NQ
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 88 VNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQ 147
L L L N+L G L++L L + N L+ F +L+ L+ L NQ
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 148 FVGQFPETLSELKMMRYISFGENKLSGEIPFSIYN-LSSLTHFYFPFNQLQGSLPSDLGF 206
L ++ + N+L IP ++ L++L NQLQ S+P
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFD 176
Query: 207 TLPNLEVLNVGGNQF 221
L L+ + + GNQF
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Query: 430 GLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMK 489
GL+ L+ +L+L NQL F L LG + ++ N+L+ +L++L +
Sbjct: 57 GLTKLT-WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 490 GNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPVKG 549
GN + F L ++ L L+ N L F+ S+N + VP G
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VP-HG 173
Query: 550 VFS---NSSAISLDGNDNLCGGISELHLS 575
F I+L GN C L+LS
Sbjct: 174 AFDRLGKLQTITLFGNQFDCSRCEILYLS 202
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 80 IPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLE 139
IP NI + + L L N+L L+KL +L ++ N L F L +LE
Sbjct: 31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 140 FLSAAANQF----VGQFPE--TLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPF 193
L N+ +G F + L+EL++ R N+L P +L+ LT+ +
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDR------NQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 194 NQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVP--S 251
N+LQ SLP + L +L+ L + NQ + + L L + N RVP +
Sbjct: 143 NELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200
Query: 252 LENLYKLQWVSISHN 266
++L KL+ + + N
Sbjct: 201 FDSLEKLKMLQLQEN 215
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 163 RYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFT 222
+ + NKLS + + L+ L Y N+LQ +LP+ + L NLE L V N+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 223 GPIPASISNASNLMRLTIAKNGFSGRVPSL-ENLYKLQWVSISHNHLGNYGEKDNLEFVN 281
NL L + +N P + ++L KL ++S+ +N L + + +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG----VFD 154
Query: 282 SLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQL 324
L + L L NN +PE + T L+ L + NNQL
Sbjct: 155 KLTSLKELRLY----NNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 39 LSFLRVLDLKNNSFRDEIPQEI-GYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGV 97
L+ LR+L L +N + +P I L L+ L + +N VNL L L
Sbjct: 60 LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 98 NELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPE--- 154
N+L P SL+KL LS+ YN L F L+SL+ L NQ + + PE
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF 177
Query: 155 -TLSELKMMR 163
L+ELK ++
Sbjct: 178 DKLTELKTLK 187
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 29/221 (13%)
Query: 43 RVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVG 102
+ LDL++N + L +L++L L++N L++L G+ +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN--------------KLQTLPAGIFK--- 82
Query: 103 KVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMM 162
+L +L LW+ N L F L +L L NQ P L +
Sbjct: 83 ----ELKNLETLWVTD---NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 163 RYISFGENKLSGEIPFSIYN-LSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQF 221
Y+S G N+L +P +++ L+SL NQL+ +P L L+ L + NQ
Sbjct: 136 TYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193
Query: 222 TGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVS 262
+ + L L + +N + + +Y +W+
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQENPWDCTCNGI--IYMAKWLK 232
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 35 HIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLG 94
H +LS L++ ++ N F+ +L RL + N ++P I + NL L
Sbjct: 227 HALDLSNLQIFNISANIFK------YDFLTRLYL----NGNSLTELPAEIKNLSNLRVLD 276
Query: 95 LGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPE 154
L N L +P +LGS +L ++++ +P FGNL +L+FL N QF +
Sbjct: 277 LSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334
Query: 155 TLSE 158
L+E
Sbjct: 335 ILTE 338
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 440 LSQNQLNGS----LPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQG 495
L++ LNG+ LP L NL +D+S N+L+ +P LGSC +L+ N
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMV-T 306
Query: 496 NIPSSFSSLRGMQNLDLSRNNLSGRIPK 523
+P F +L +Q L + N L + K
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 375 EIPSSIGNLTSLAILAFDENMLEGSIPSSLGKC 407
E+P+ I NL++L +L N L S+P+ LG C
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSC 292
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 648 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKS----FMAQCQALRSVR 703
F +E IG GSF +VYKG+ D ET V V LQ R +KS F + + L+ ++
Sbjct: 30 FDIE--IGRGSFKTVYKGL----DTETTVEVAWCELQDRKLTKSERQRFKEEAEXLKGLQ 83
Query: 704 HRNLVKIITS 713
H N+V+ S
Sbjct: 84 HPNIVRFYDS 93
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 34/166 (20%)
Query: 159 LKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGG 218
L +RY++ G NKL ++ L++LT+ NQLQ SLP+ + L NL+ L +
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118
Query: 219 NQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNLE 278
NQ +P + + L L ++ + HN L + +
Sbjct: 119 NQLQS-LPDGV----------------------FDKLTNLTYLYLYHNQLQSLPKG---- 151
Query: 279 FVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQL 324
+ L N +RL+L DNN LPE V + T+L++L + +NQL
Sbjct: 152 VFDKLTNLTRLDL----DNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 130 SSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYN-LSSLTH 188
S+ L++L +L NQ +L ++ + EN+L +P +++ L++LT+
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 189 FYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKN----- 243
Y NQLQ SLP + L NL L++ NQ + L +L++ N
Sbjct: 138 LYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 244 --GFSGRVPSLENLYKL 258
G R+ SL +++ L
Sbjct: 197 PDGVFDRLTSLTHIWLL 213
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 88 VNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQ 147
NL+ L L N+L G L+ L L +++N L F L++L L NQ
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ 168
Query: 148 FVGQFPE-TLSELKMMRYISFGENKLSGEIPFSIYN-LSSLTHFYF 191
+ PE +L ++ +S +N+L +P +++ L+SLTH +
Sbjct: 169 -LQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWL 212
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 7/180 (3%)
Query: 84 ISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSA 143
I + N+ L LG N+L L L+ L L + N L F L++L+ L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 144 AANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYN-LSSLTHFYFPFNQLQGSLPS 202
NQ +L + Y+ N+L +P +++ L++LT NQLQ SLP
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQ-SLPE 174
Query: 203 DLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVS 262
+ L L+ L++ NQ ++L + + N + + LY +W+S
Sbjct: 175 GVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDI--LYLSRWIS 232
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G FG VY+G+ + VAVK L + + F+ + ++
Sbjct: 8 MERTD-ITMKHKLGGGQFGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 63
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 64 IKHPNLVQLLGVCT 77
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 654 IGAGSFGSVYKGILNH-----DDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLV 708
+G G+F ++KG+ HET V +KVL+ HR S+SF + + H++LV
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 454 GILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLS 513
G+ + + +D+S N+++ + L C+ L+ LV+ N SFSSL +++LDLS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 514 RNNLSGRIPKYFE 526
N LS +F+
Sbjct: 109 YNYLSNLSSSWFK 121
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 69 LALHNNTFGGQIPDNISHCVNLESLGL---GVNELVGKVPGKLGSLSKLWILSVHYNSLS 125
L L NN ++ CVNL++L L G+N + LGSL L + YN LS
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH---LDLSYNYLS 113
Query: 126 GEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYIS 166
S F LSSL FL+ N + +TL E + +++
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPY-----KTLGETSLFSHLT 149
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 94/235 (40%), Gaps = 12/235 (5%)
Query: 44 VLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGK 103
+LDL+NN + + L L L L NN S L+ L + N LV +
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116
Query: 104 VPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQF--VGQFPETLSELKM 161
+P L S L L +H N + F L ++ + N G P LK
Sbjct: 117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK- 173
Query: 162 MRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQF 221
+ Y+ E KL+G IP + +L + N++Q DL L L +G NQ
Sbjct: 174 LNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQI 229
Query: 222 TGPIPASISNASNLMRLTIAKNGFSGRVPS-LENLYKLQWVSISHNHLGNYGEKD 275
S+S L L + N S RVP+ L +L LQ V + N++ G D
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 654 IGAGSFGSVYKGILNH-----DDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLV 708
+G G+F ++KG+ HET V +KVL+ HR S+SF + + H++LV
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 454 GILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLS 513
G+ + + +D+S N+++ + L C+ L+ LV+ N SFSSL +++LDLS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 514 RNNLSGRIPKYFE 526
N LS +F+
Sbjct: 83 YNYLSNLSSSWFK 95
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 69 LALHNNTFGGQIPDNISHCVNLESLGL---GVNELVGKVPGKLGSLSKLWILSVHYNSLS 125
L L NN ++ CVNL++L L G+N + LGSL L + YN LS
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH---LDLSYNYLS 87
Query: 126 GEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYIS 166
S F LSSL FL+ N + +TL E + +++
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPY-----KTLGETSLFSHLT 123
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 11 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 66
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 67 IKHPNLVQLLGVCT 80
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 652 NLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLVK 709
LIG G FG VY G + + VA+++++++ K+F + A R RH N+V
Sbjct: 39 ELIGKGRFGQVYHGRWHGE-----VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVL 93
Query: 710 IITSC 714
+ +C
Sbjct: 94 FMGAC 98
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 12 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 67
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 68 IKHPNLVQLLGVCT 81
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 214 MERTD-ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 269
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 270 IKHPNLVQLLGVCT 283
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 11 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 66
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 67 IKHPNLVQLLGVCT 80
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 15 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 70
Query: 702 VRHRNLVKIITSC 714
++H NLV+++ C
Sbjct: 71 IKHPNLVQLLGVC 83
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 15 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 70
Query: 702 VRHRNLVKIITSC 714
++H NLV+++ C
Sbjct: 71 IKHPNLVQLLGVC 83
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 12 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 67
Query: 702 VRHRNLVKIITSC 714
++H NLV+++ C
Sbjct: 68 IKHPNLVQLLGVC 80
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 23 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 78
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 79 IKHPNLVQLLGVCT 92
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 217 MERTD-ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 272
Query: 702 VRHRNLVKIITSC 714
++H NLV+++ C
Sbjct: 273 IKHPNLVQLLGVC 285
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 15 MERTD-ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 70
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 71 IKHPNLVQLLGVCT 84
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 10 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 65
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 66 IKHPNLVQLLGVCT 79
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 8 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 63
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 64 IKHPNLVQLLGVCT 77
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 14 MERTD-ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 69
Query: 702 VRHRNLVKIITSC 714
++H NLV+++ C
Sbjct: 70 IKHPNLVQLLGVC 82
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 15 MERTD-ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 70
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 71 IKHPNLVQLLGVCT 84
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 10 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 65
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 66 IKHPNLVQLLGVCT 79
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 10 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 65
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 66 IKHPNLVQLLGVCT 79
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 10 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 65
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 66 IKHPNLVQLLGVCT 79
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 12 MERTD-ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 67
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 68 IKHPNLVQLLGVCT 81
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 8 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 63
Query: 702 VRHRNLVKIITSC 714
++H NLV+++ C
Sbjct: 64 IKHPNLVQLLGVC 76
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 15 MERTD-ITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 70
Query: 702 VRHRNLVKIITSC 714
++H NLV+++ C
Sbjct: 71 IKHPNLVQLLGVC 83
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 256 MERTD-ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 311
Query: 702 VRHRNLVKIITSCA 715
++H NLV+++ C
Sbjct: 312 IKHPNLVQLLGVCT 325
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 10 MERTD-ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 65
Query: 702 VRHRNLVKIITSC 714
++H NLV+++ C
Sbjct: 66 IKHPNLVQLLGVC 78
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY+G+ + VAVK L + + F+ + ++
Sbjct: 10 MERTD-ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 65
Query: 702 VRHRNLVKIITSC 714
++H NLV+++ C
Sbjct: 66 IKHPNLVQLLGVC 78
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 652 NLIGAGSFGSVYKGILNHDDHETL---VAVKVLN-LQHRGASKSFMAQCQALRSVRHRNL 707
++G+G+FG+VYKGI + ET+ VA+K+LN A+ FM + + S+ H +L
Sbjct: 44 KVLGSGAFGTVYKGIWVPEG-ETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHL 102
Query: 708 VKIITSC 714
V+++ C
Sbjct: 103 VRLLGVC 109
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 652 NLIGAGSFGSVYKGILNHDDHETL---VAVKVLN-LQHRGASKSFMAQCQALRSVRHRNL 707
++G+G+FG+VYKGI + ET+ VA+K+LN A+ FM + + S+ H +L
Sbjct: 21 KVLGSGAFGTVYKGIWVPEG-ETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHL 79
Query: 708 VKIITSC 714
V+++ C
Sbjct: 80 VRLLGVC 86
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 650 LENLIGAGSFGSVYKGILNHDDHETL-VAVKVLNLQHRGAS--KSFMAQCQALRSVRHRN 706
L ++G G FGSV +G L +D +L VAVK + L + + F+++ ++ H N
Sbjct: 38 LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPN 97
Query: 707 LVKIITSC 714
+++++ C
Sbjct: 98 VIRLLGVC 105
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 423 TIPTEVIGLSSLSIYLDLSQNQLNG-SLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
T+ + +GL L +LD + L S F L+NL +DIS
Sbjct: 387 TMSSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 482 RLEELVMKGNFFQGN-IPSSFSSLRGMQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNH 540
LE L M GN FQ N +P F+ LR + LDLS+ L P F +SN
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 541 FEGEVPVKGVFSNSSAI 557
+ VP G+F +++
Sbjct: 506 LKS-VP-DGIFDRLTSL 520
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 110 SLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQF-PETLSELKMMRYISFG 168
SL L L + + F LSSLE L A N F F P+ +EL+ + ++
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 169 ENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIP 226
+ +L P + +LSSL NQL+ S+P + L +L+ + + N + P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 430 GLSSLSIYLDLSQNQLNGS-LPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVM 488
GLSSL + L ++ N + LP F L+NL +D+S+ +L P + S L+ L M
Sbjct: 443 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 489 KGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPK 523
N + F L +Q + L N P+
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 66 LQILALHNNTFGGQ-IPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSL 124
L++L + N+F +PD + NL L L +L P SLS L +L++ N L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 125 SGEIPSSFGNLSSLE 139
F L+SL+
Sbjct: 507 KSVPDGIFDRLTSLQ 521
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 90 LESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFV 149
L+ L L E+ G SLS L L + N + +F LSSL+ L A
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 150 G--QFPETLSELKMMRYISFGENKL-SGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDL 204
FP + LK ++ ++ N + S ++P NL++L H N++Q +DL
Sbjct: 114 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 637 SYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMA 694
SY I+A++ L IG+GSFG+VYKG + D VAVK+L + ++F
Sbjct: 28 SYYWEIEASE-VMLSTRIGSGSFGTVYKGKWHGD-----VAVKILKVVDPTPEQFQAFRN 81
Query: 695 QCQALRSVRHRNLV 708
+ LR RH N++
Sbjct: 82 EVAVLRKTRHVNIL 95
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITS 713
+G G+FG VYK + + L A KV++ + + +M + L S H N+VK++ +
Sbjct: 45 LGDGAFGKVYKA--QNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 102
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 612 TSRRSKSKRELATP--PS--ALLASVLRVSYQNLIKATDGFSLENLIGAGSFGSVYKGIL 667
T RR +REL P PS A ++LR+ +K T+ F ++G+G+FG+VYKG+
Sbjct: 17 TLRRLLQERELVEPLTPSGEAPNQALLRI-----LKETE-FKKIKVLGSGAFGTVYKGLW 70
Query: 668 NHDDHETLVAVKVLNLQHR---GASKSFMAQCQALRSVRHRNLVKIITSC 714
+ + + V ++ L+ A+K + + + SV + ++ +++ C
Sbjct: 71 IPEGEKVKIPVAIMELREATSPKANKEILDEAYVMASVDNPHVCRLLGIC 120
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITS 713
+G G+FG VYK + + L A KV++ + + +M + L S H N+VK++ +
Sbjct: 45 LGDGAFGKVYKA--QNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 102
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITS 713
+G G+FG VYK + + L A KV++ + + +M + L S H N+VK++ +
Sbjct: 45 LGDGAFGKVYKA--QNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 102
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 648 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNL 683
F+ + IG GSFG VYKGI NH + +VA+K+++L
Sbjct: 21 FTKLDRIGKGSFGEVYKGIDNHT--KEVVAIKIIDL 54
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS 701
++ TD ++++ +G G +G VY G+ + VAVK L + + F+ + ++
Sbjct: 29 MERTD-ITMKHKLGGGQYGEVYVGVWK--KYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 84
Query: 702 VRHRNLVKIITSC 714
++H NLV+++ C
Sbjct: 85 IKHPNLVQLLGVC 97
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 16 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 21 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 72
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 423 TIPTEVIGLSSLSIYLDLSQNQLNG-SLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
T+ + +GL L +LD + L S F L+NL +DIS
Sbjct: 411 TMSSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469
Query: 482 RLEELVMKGNFFQGN-IPSSFSSLRGMQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNH 540
LE L M GN FQ N +P F+ LR + LDLS+ L P F S N+
Sbjct: 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 541 F 541
F
Sbjct: 530 F 530
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 430 GLSSLSIYLDLSQNQLNGS-LPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVM 488
GLSSL + L ++ N + LP F L+NL +D+S+ +L P + S L+ L M
Sbjct: 467 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 489 KGNFFQGNIPSSFSSLRGMQNLDLSRNNL 517
N F + L +Q LD S N++
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 66 LQILALHNNTFGGQ-IPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSL 124
L++L + N+F +PD + NL L L +L P SLS L +L++ +N+
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 125 SGEIPSSFGNLSSLEFLSAAAN-------QFVGQFPETLSELKMMR 163
+ L+SL+ L + N Q + FP +L+ L + +
Sbjct: 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 32 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 83
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 101 VGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELK 160
+ VP + + ++ +L ++ N ++ P F +L+ L +L+ A NQ +L
Sbjct: 31 LASVPAGIPTTTQ--VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 161 MMRYISFGENKLSGEIPFSIY-NLSSLTHFYFPFN 194
+ +++ N+L IP ++ NL SLTH Y FN
Sbjct: 89 KLTHLALHINQLK-SIPMGVFDNLKSLTHIYL-FN 121
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 30/72 (41%)
Query: 67 QILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSG 126
Q+L L+ N P L L L VN+L G L+KL L++H N L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 127 EIPSSFGNLSSL 138
F NL SL
Sbjct: 103 IPMGVFDNLKSL 114
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 20 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 71
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 16 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
GT+P V+G LDLS NQL SLP L L +D+S N+L+ +L
Sbjct: 74 GTLP--VLGT------LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
L+EL +KGN + P + ++ L L+ NNL+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
GT+P V+G LDLS NQL SLP L L +D+S N+L+ +L
Sbjct: 74 GTLP--VLG------TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
L+EL +KGN + P + ++ L L+ NNL+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 423 TIPTEVIGLSSLSIYLDLSQNQLNG-SLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
T+ + +GL L +LD + L S F L+NL +DIS
Sbjct: 387 TMSSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 482 RLEELVMKGNFFQGN-IPSSFSSLRGMQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNH 540
LE L M GN FQ N +P F+ LR + LDLS+ L P F S N+
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 541 F 541
F
Sbjct: 506 F 506
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 430 GLSSLSIYLDLSQNQLNGS-LPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVM 488
GLSSL + L ++ N + LP F L+NL +D+S+ +L P + S L+ L M
Sbjct: 443 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 489 KGNFFQGNIPSSFSSLRGMQNLDLSRNNL 517
N F + L +Q LD S N++
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 66 LQILALHNNTFGGQ-IPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSL 124
L++L + N+F +PD + NL L L +L P SLS L +L++ +N+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 125 SGEIPSSFGNLSSLEFLSAAAN-------QFVGQFPETLSELKMMR 163
+ L+SL+ L + N Q + FP +L+ L + +
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 16 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 18 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 69
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 44 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 95
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 21 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 72
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
GT+P V+G LDLS NQL SLP L L +D+S N+L+ +L
Sbjct: 75 GTLP--VLG------TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 125
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
L+EL +KGN + P + ++ L L+ NNL+
Sbjct: 126 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 44 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 95
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 32 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 83
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 43 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 94
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
GT+P V+G LDLS NQL SLP L L +D+S N+L+ +L
Sbjct: 74 GTLP--VLG------TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
L+EL +KGN + P + ++ L L+ NNL+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
GT+P V+G LDLS NQL SLP L L +D+S N+L+ +L
Sbjct: 74 GTLP--VLG------TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
L+EL +KGN + P + ++ L L+ NNL+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGAS--KSFMAQCQALRSVRHRNLV 708
IG+GSFG+VYKG + D VAVK+LN+ ++F + LR RH N++
Sbjct: 36 IGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 87
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 423 TIPTEVIGLSSLSIYLDLSQNQLNG-SLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
T+ + +GL L +LD + L S F L+NL +DIS
Sbjct: 92 TMSSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 482 RLEELVMKGNFFQGN-IPSSFSSLRGMQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNH 540
LE L M GN FQ N +P F+ LR + LDLS+ L P F S N+
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 541 F 541
F
Sbjct: 211 F 211
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 430 GLSSLSIYLDLSQNQLNGS-LPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVM 488
GLSSL + L ++ N + LP F L+NL +D+S+ +L P + S L+ L M
Sbjct: 148 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 489 KGNFFQGNIPSSFSSLRGMQNLDLSRNNL 517
N F + L +Q LD S N++
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 66 LQILALHNNTFGGQ-IPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSL 124
L++L + N+F +PD + NL L L +L P SLS L +L++ +N+
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 125 SGEIPSSFGNLSSLEFLSAAAN-------QFVGQFPETLSELKMMR 163
+ L+SL+ L + N Q + FP +L+ L + +
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +GAG FG V+ N T VAVK + ++F+A+ +++++H
Sbjct: 15 ESLKLEKKLGAGQFGEVWMATYN---KHTKVAVKTMKPGSMSV-EAFLAEANVMKTLQHD 70
Query: 706 NLVKI 710
LVK+
Sbjct: 71 KLVKL 75
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +GAG FG V+ N T VAVK + ++F+A+ +++++H
Sbjct: 182 ESLKLEKKLGAGQFGEVWMATYN---KHTKVAVKTMKPGSMSV-EAFLAEANVMKTLQHD 237
Query: 706 NLVKI 710
LVK+
Sbjct: 238 KLVKL 242
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGIL-NHDDHETLVAVKVLNLQHRGASK-SFMAQCQALRS 701
A + L ++G G FG VY+G+ NH + VAVK +K FM++ +++
Sbjct: 22 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 81
Query: 702 VRHRNLVKII 711
+ H ++VK+I
Sbjct: 82 LDHPHIVKLI 91
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 635 RVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMA 694
RV +L +AT+ F + LIG G FG VYKG+L VA+K + + F
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG---AKVALKRRTPESSQGIEEFET 84
Query: 695 QCQALRSVRHRNLVKIITSC 714
+ + L RH +LV +I C
Sbjct: 85 EIETLSFCRHPHLVSLIGFC 104
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +GAG FG V+ N T VAVK + ++F+A+ +++++H
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYN---KHTKVAVKTMKPGSMSV-EAFLAEANVMKTLQHD 243
Query: 706 NLVKI 710
LVK+
Sbjct: 244 KLVKL 248
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKIRHE 73
Query: 706 NLVKI 710
LV++
Sbjct: 74 KLVQL 78
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 635 RVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMA 694
RV +L +AT+ F + LIG G FG VYKG+L VA+K + + F
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG---AKVALKRRTPESSQGIEEFET 84
Query: 695 QCQALRSVRHRNLVKIITSC 714
+ + L RH +LV +I C
Sbjct: 85 EIETLSFCRHPHLVSLIGFC 104
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGIL-NHDDHETLVAVKVLNLQHRGASKS-FMAQCQALRS 701
A + L ++G G FG VY+G+ NH + VAVK +K FM++ +++
Sbjct: 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 69
Query: 702 VRHRNLVKII 711
+ H ++VK+I
Sbjct: 70 LDHPHIVKLI 79
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 648 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNL 707
+E ++G G+FG V K D VA+K ++ K+F+ + + L V H N+
Sbjct: 10 IEVEEVVGRGAFGVVCKAKWRAKD----VAIK--QIESESERKAFIVELRQLSRVNHPNI 63
Query: 708 VKIITSC 714
VK+ +C
Sbjct: 64 VKLYGAC 70
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 648 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNL 707
+E ++G G+FG V K D VA+K ++ K+F+ + + L V H N+
Sbjct: 11 IEVEEVVGRGAFGVVCKAKWRAKD----VAIK--QIESESERKAFIVELRQLSRVNHPNI 64
Query: 708 VKIITSC 714
VK+ +C
Sbjct: 65 VKLYGAC 71
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGIL-NHDDHETLVAVKVLNLQHRGASK-SFMAQCQALRS 701
A + L ++G G FG VY+G+ NH + VAVK +K FM++ +++
Sbjct: 6 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 65
Query: 702 VRHRNLVKII 711
+ H ++VK+I
Sbjct: 66 LDHPHIVKLI 75
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 648 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASK--SFMAQCQALRSVRHR 705
+++ IGAGSFG+V++ + H + VAVK+L Q A + F+ + ++ +RH
Sbjct: 39 LNIKEKIGAGSFGTVHRA----EWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHP 94
Query: 706 NLV 708
N+V
Sbjct: 95 NIV 97
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 648 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ--HRGASKSFMAQCQALRSVRHR 705
+++ IGAGSFG+V++ + H + VAVK+L Q H F+ + ++ +RH
Sbjct: 39 LNIKEKIGAGSFGTVHRA----EWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHP 94
Query: 706 NLV 708
N+V
Sbjct: 95 NIV 97
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 56 IPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLW 115
+P+E+ L ++ L NN + S+ L +L L N L P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 116 ILSVHYNSLSGEIPSSFGNLSSLEFLSAAAN 146
+LS+H N +S +F +LS+L L+ AN
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 104 VPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMR 163
VP +L + L ++ + N +S SF N++ L L + N+ P T LK +R
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 164 YISFGENKLSGEIPFSIYN-LSSLTHFYFPFNQL 196
+S N +S +P +N LS+L+H N L
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 15 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 70
Query: 706 NLVKI 710
LV++
Sbjct: 71 KLVQL 75
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 15 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 70
Query: 706 NLVKI 710
LV++
Sbjct: 71 KLVQL 75
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 8 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 63
Query: 706 NLVKI 710
LV++
Sbjct: 64 KLVQL 68
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 11 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 66
Query: 706 NLVKI 710
LV++
Sbjct: 67 KLVQL 71
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 9 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 64
Query: 706 NLVKI 710
LV++
Sbjct: 65 KLVQL 69
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVLN---LQHRGASKSFMAQC 696
LI D LE L G GSFG V +G + +T+ VAVK L L A F+ +
Sbjct: 8 LIGEKDLRLLEKL-GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREV 66
Query: 697 QALRSVRHRNLVKI 710
A+ S+ HRNL+++
Sbjct: 67 NAMHSLDHRNLIRL 80
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 7 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 62
Query: 706 NLVKI 710
LV++
Sbjct: 63 KLVQL 67
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 73
Query: 706 NLVKI 710
LV++
Sbjct: 74 KLVQL 78
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + + ++F+ + Q ++ +RH
Sbjct: 185 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGNM-SPEAFLQEAQVMKKLRHE 240
Query: 706 NLVKI 710
LV++
Sbjct: 241 KLVQL 245
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 73
Query: 706 NLVKI 710
LV++
Sbjct: 74 KLVQL 78
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 73
Query: 706 NLVKI 710
LV++
Sbjct: 74 KLVQL 78
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 638 YQNLIKATDGFSLENLIGA-GSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQC 696
Y+++ + + +IG G FG VYK + + L A KV++ + + +M +
Sbjct: 1 YEHVTRDLNPEDFWEIIGELGDFGKVYKA--QNKETSVLAAAKVIDTKSEEELEDYMVEI 58
Query: 697 QALRSVRHRNLVKIITS 713
L S H N+VK++ +
Sbjct: 59 DILASCDHPNIVKLLDA 75
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 73
Query: 706 NLVKI 710
LV++
Sbjct: 74 KLVQL 78
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVLN---LQHRGASKSFMAQC 696
LI D LE L G GSFG V +G + +T+ VAVK L L A F+ +
Sbjct: 14 LIGEKDLRLLEKL-GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREV 72
Query: 697 QALRSVRHRNLVKI 710
A+ S+ HRNL+++
Sbjct: 73 NAMHSLDHRNLIRL 86
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 651 ENLIGAGSFGSVYKGILNHD--DHETLVAVKVLNLQHRGASK-SFMAQCQALRSVRHRNL 707
+ +IGAG FG VYKG+L E VA+K L + + F+ + + H N+
Sbjct: 49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNI 108
Query: 708 VKI 710
+++
Sbjct: 109 IRL 111
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 73
Query: 706 NLVKI 710
LV++
Sbjct: 74 KLVQL 78
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVLN---LQHRGASKSFMAQC 696
LI D LE L G GSFG V +G + +T+ VAVK L L A F+ +
Sbjct: 14 LIGEKDLRLLEKL-GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREV 72
Query: 697 QALRSVRHRNLVKI 710
A+ S+ HRNL+++
Sbjct: 73 NAMHSLDHRNLIRL 86
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 73
Query: 706 NLVKI 710
LV++
Sbjct: 74 KLVQL 78
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 73
Query: 706 NLVKI 710
LV++
Sbjct: 74 KLVQL 78
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVLN---LQHRGASKSFMAQC 696
LI D LE L G GSFG V +G + +T+ VAVK L L A F+ +
Sbjct: 4 LIGEKDLRLLEKL-GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREV 62
Query: 697 QALRSVRHRNLVKI 710
A+ S+ HRNL+++
Sbjct: 63 NAMHSLDHRNLIRL 76
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 453 FGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDL 512
FG L +L +++ N+L+G PN+ ++EL + N + F L ++ L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 513 SRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPVKGVFSNSSAISLDGNDNLCGGISEL 572
N +S +P FE +SN F + SL+G CG S++
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV 169
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 60 IGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSV 119
G L L L L N G P+ +++ L LG N++ L +L L++
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 120 HYNSLSGEIPSSFGNLSSLEFLSAAANQF 148
+ N +S +P SF +L+SL L+ A+N F
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 36/167 (21%)
Query: 84 ISHC--VNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSS--FGNLSSLE 139
+ HC ++ G G+ E+ +P L ++ N L G I S FG L L
Sbjct: 5 MCHCEGTTVDCTGRGLKEIPRDIPLHTTELL------LNDNEL-GRISSDGLFGRLPHLV 57
Query: 140 FLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGS 199
L NQ G P ++ + GENK+ EI ++
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMF------------------ 98
Query: 200 LPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFS 246
L L+ LN+ NQ + +P S + ++L L +A N F+
Sbjct: 99 ------LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 436 IYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI-RLEELVMKGNFFQ 494
+ L+L +NQL G P F ++ + + ENK+ EI N + + +L+ L + N
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS 115
Query: 495 GNIPSSFSSLRGMQNLDLSRN 515
+P SF L + +L+L+ N
Sbjct: 116 CVMPGSFEHLNSLTSLNLASN 136
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVLN---LQHRGASKSFMAQC 696
LI D LE L G GSFG V +G + +T+ VAVK L L A F+ +
Sbjct: 4 LIGEKDLRLLEKL-GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREV 62
Query: 697 QALRSVRHRNLVKI 710
A+ S+ HRNL+++
Sbjct: 63 NAMHSLDHRNLIRL 76
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKS-FMAQCQALRSVRHRNLVKIIT 712
IG G+FG V+ G L D+ TLVAVK K+ F+ + + L+ H N+V++I
Sbjct: 122 IGRGNFGEVFSGRLRADN--TLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179
Query: 713 SCA 715
C
Sbjct: 180 VCT 182
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 9/234 (3%)
Query: 44 VLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGK 103
+LDL+NN + + L L L L NN P + V LE L L N+L +
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KE 114
Query: 104 VPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPE--TLSELKM 161
+P K+ L L VH N ++ S F L+ + + N E +K
Sbjct: 115 LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 162 MRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQF 221
+ YI + ++ IP + SLT + N++ + L L NL L + N
Sbjct: 173 LSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSI 228
Query: 222 TGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKD 275
+ S++N +L L + N L + +Q V + +N++ G D
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 282
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 438 LDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQ--- 494
LDL N++ +F LKNL + + NK+S P + ++LE L + N +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 495 GNIPSSFSSLRGMQN 509
+P + LR +N
Sbjct: 117 EKMPKTLQELRVHEN 131
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKS-FMAQCQALRSVRHRNLVKIIT 712
IG G+FG V+ G L D+ TLVAVK K+ F+ + + L+ H N+V++I
Sbjct: 122 IGRGNFGEVFSGRLRADN--TLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179
Query: 713 SCA 715
C
Sbjct: 180 VCT 182
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVLN---LQHRGASKSFMAQC 696
LI D LE L G GSFG V +G + +T+ VAVK L L A F+ +
Sbjct: 8 LIGEKDLRLLEKL-GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREV 66
Query: 697 QALRSVRHRNLVKI 710
A+ S+ HRNL+++
Sbjct: 67 NAMHSLDHRNLIRL 80
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVLN---LQHRGASKSFMAQC 696
LI D LE L G GSFG V +G + +T+ VAVK L L A F+ +
Sbjct: 4 LIGEKDLRLLEKL-GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREV 62
Query: 697 QALRSVRHRNLVKI 710
A+ S+ HRNL+++
Sbjct: 63 NAMHSLDHRNLIRL 76
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
GT+P V+G LDLS NQL SLP L L +D+S N+L+ +L
Sbjct: 74 GTLP--VLGT------LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
L+EL +KGN + P + ++ L L+ N+L+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 9/234 (3%)
Query: 44 VLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGK 103
+LDL+NN + + L L L L NN P + V LE L L N+L +
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KE 114
Query: 104 VPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPE--TLSELKM 161
+P K+ L L VH N ++ S F L+ + + N E +K
Sbjct: 115 LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 162 MRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQF 221
+ YI + ++ IP + SLT + N++ + L L NL L + N
Sbjct: 173 LSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSI 228
Query: 222 TGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKD 275
+ S++N +L L + N L + +Q V + +N++ G D
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 282
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 438 LDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQ--- 494
LDL N++ +F LKNL + + NK+S P + ++LE L + N +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 495 GNIPSSFSSLRGMQN 509
+P + LR +N
Sbjct: 117 EKMPKTLQELRVHEN 131
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 239
Query: 706 NLVKI 710
LV++
Sbjct: 240 KLVQL 244
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 239
Query: 706 NLVKI 710
LV++
Sbjct: 240 KLVQL 244
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 239
Query: 706 NLVKI 710
LV++
Sbjct: 240 KLVQL 244
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ LE +G G FG V+ G N T VA+K L + ++F+ + Q ++ +RH
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHE 322
Query: 706 NLVKI 710
LV++
Sbjct: 323 KLVQL 327
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 23 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 78
Query: 706 NLVKI 710
LV++
Sbjct: 79 RLVRL 83
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 10/154 (6%)
Query: 89 NLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSS--FGNLSSLEFLSAAAN 146
NL L LG +++ P L L+ L +++ LS + F NL +L L + N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 147 QFVGQFPE-TLSELKMMRYISFGENK--LSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSD 203
Q + + +L ++ I F N+ L E +L+ F N L + D
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193
Query: 204 LG-----FTLPNLEVLNVGGNQFTGPIPASISNA 232
G F LE+L+V GN +T I + SNA
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 154 ETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEV 213
ETL +LK++ NK++ E + + NL L Y L G L S + LP +
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY----NLLGELYSSNFYGLPKVAY 342
Query: 214 LNVGGNQFTGPIPASISNASNLMRLTIAKNGFSG--RVPSLENLY-------KLQWVSIS 264
+++ N + L L + N + +PS+ +++ L ++++
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402
Query: 265 HN--HLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNN 322
N HL +NL+ + L+ L++L ++ N F + + + L +L +G N
Sbjct: 403 ANLIHLSE-NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 323 QL 324
L
Sbjct: 462 ML 463
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 22 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 77
Query: 706 NLVKI 710
LV++
Sbjct: 78 RLVRL 82
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 13 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 68
Query: 706 NLVKI 710
LV++
Sbjct: 69 RLVRL 73
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 21 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 76
Query: 706 NLVKI 710
LV++
Sbjct: 77 RLVRL 81
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 19 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 74
Query: 706 NLVKI 710
LV++
Sbjct: 75 RLVRL 79
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 15 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 70
Query: 706 NLVKI 710
LV++
Sbjct: 71 RLVRL 75
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH--RGASKSFMAQCQALRSVR 703
D + +G G++G VYK I + +ET VA+K + L+H G + + + L+ ++
Sbjct: 34 DRYRRITKLGEGTYGEVYKAI-DTVTNET-VAIKRIRLEHEEEGVPGTAIREVSLLKELQ 91
Query: 704 HRNLVKI 710
HRN++++
Sbjct: 92 HRNIIEL 98
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 18 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 73
Query: 706 NLVKI 710
LV++
Sbjct: 74 RLVRL 78
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
GT+P V+G LDLS NQL SLP L L +D+S N+L+ +L
Sbjct: 74 GTLP--VLG------TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
L+EL +KGN + P + ++ L L+ N L+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 14 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 69
Query: 706 NLVKI 710
LV++
Sbjct: 70 RLVRL 74
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
GT+P V+G LDLS NQL SLP L L +D+S N+L+ +L
Sbjct: 74 GTLP--VLG------TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
L+EL +KGN + P + ++ L L+ N L+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 19 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 74
Query: 706 NLVKI 710
LV++
Sbjct: 75 RLVRL 79
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 5/195 (2%)
Query: 75 TFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGN 134
T Q ++ C N S + V + + +VP + + ++L L++H N + +SF +
Sbjct: 29 TGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRL--LNLHENQIQIIKVNSFKH 86
Query: 135 LSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFN 194
L LE L + N + L + + +N+L+ + LS L + N
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Query: 195 QLQGSLPSDLGFTLPNLEVLNVGGNQFTGPI-PASISNASNLMRLTIAKNGFSGRVPSLE 253
++ S+PS +P+L L++G + I + SNL L +A +P+L
Sbjct: 147 PIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLT 204
Query: 254 NLYKLQWVSISHNHL 268
L KL + +S NHL
Sbjct: 205 PLIKLDELDLSGNHL 219
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 430 GLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMK 489
GLS+L YL+L+ L PN L L +D+S N LS P S + L++L M
Sbjct: 183 GLSNLR-YLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 490 GNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
+ Q ++F +L+ + ++L+ NNL+
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 13 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 68
Query: 706 NLVKI 710
LV++
Sbjct: 69 RLVRL 73
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 13 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 68
Query: 706 NLVKI 710
LV++
Sbjct: 69 RLVRL 73
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 11/202 (5%)
Query: 101 VGKVPGK-LGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAAN-QFVGQFPETLSE 158
+ VP S L IL +H N+L+G ++F L+ LE L + N Q P T
Sbjct: 43 ISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRG 102
Query: 159 LKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGG 218
L + + L P L++L + Y N LQ +LP + L NL L + G
Sbjct: 103 LGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFLHG 161
Query: 219 NQFTGPIPASISNASNLMRLTIAKNGFSGRVP-SLENLYKLQWVSISHNHLGNYGEKDNL 277
N+ + +L RL + +N + P + +L +L + + N+L ++
Sbjct: 162 NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-------SM 214
Query: 278 EFVNSLVNASRLELLEISDNNF 299
LV L+ L ++DN +
Sbjct: 215 LPAEVLVPLRSLQYLRLNDNPW 236
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 9 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 64
Query: 706 NLVKI 710
LV++
Sbjct: 65 RLVRL 69
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
GT+P V+G LDLS NQL SLP L L +D+S N+L+ +L
Sbjct: 74 GTLP--VLGT------LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
L+EL +KGN + P + ++ L L+ N L+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCI 481
GT+P V+G LDLS NQL SLP L L +D+S N+L+ +L
Sbjct: 74 GTLP--VLGT------LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 482 RLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518
L+EL +KGN + P + ++ L L+ N L+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N T VAVK L Q + +F+A+ ++ ++H+
Sbjct: 8 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQ 63
Query: 706 NLVKI 710
LV++
Sbjct: 64 RLVRL 68
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 652 NLIGAGSFGSVYKGILNHDDHETLVAVK----VLNLQHRGASKSFMAQCQALRSVRHRNL 707
N +G G FG VYKG +N+ T VAVK ++++ + F + + + +H NL
Sbjct: 37 NKMGEGGFGVVYKGYVNN----TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENL 92
Query: 708 VKII 711
V+++
Sbjct: 93 VELL 96
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 652 NLIGAGSFGSVYKGILNHDDHETLVAVK----VLNLQHRGASKSFMAQCQALRSVRHRNL 707
N +G G FG VYKG +N+ T VAVK ++++ + F + + + +H NL
Sbjct: 37 NKMGEGGFGVVYKGYVNN----TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENL 92
Query: 708 VKII 711
V+++
Sbjct: 93 VELL 96
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS--VR 703
D L LIG G +G+VYKG L+ E VAVKV + +R ++F+ + R +
Sbjct: 13 DNLKLLELIGRGRYGAVYKGSLD----ERPVAVKVFSFANR---QNFINEKNIYRVPLME 65
Query: 704 HRNLVKIIT 712
H N+ + I
Sbjct: 66 HDNIARFIV 74
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 652 NLIGAGSFGSVYKGILNHDDHETLVAVK----VLNLQHRGASKSFMAQCQALRSVRHRNL 707
N +G G FG VYKG +N+ T VAVK ++++ + F + + + +H NL
Sbjct: 31 NKMGEGGFGVVYKGYVNN----TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENL 86
Query: 708 VKII 711
V+++
Sbjct: 87 VELL 90
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 127 EIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSL 186
+ P LS L+ + A + P+T + + ++ N L +P SI +L+ L
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRL 152
Query: 187 THFYFPFNQLQGSLPSDLGFT--------LPNLEVLNVGGNQFTG--PIPASISNASNLM 236
LP L T L NL+ L + ++TG +PASI+N NL
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL---EWTGIRSLPASIANLQNLK 209
Query: 237 RLTIAKNGFSGRVPSLENLYKLQWVSI 263
L I + S P++ +L KL+ + +
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDL 236
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 621 ELATPPSALLASVLRVSYQNLIKATDG-FSLENLIGAGSFGSVYKGILNHDDHETLVAVK 679
+L PP L ++ +L K + F + +G GS+GSVYK I H + +VA+K
Sbjct: 6 QLRNPPRRQLK---KLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAI--HKETGQIVAIK 60
Query: 680 VL----NLQHRGASKSFMAQCQALRSVRH 704
+ +LQ S M QC + V++
Sbjct: 61 QVPVESDLQEIIKEISIMQQCDSPHVVKY 89
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNL-QHRGASKSFMAQCQALRSVRHRNLVKIIT 712
+G G+FGSV +G+ + VA+KVL + ++ M + Q + + + +V++I
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403
Query: 713 SC 714
C
Sbjct: 404 VC 405
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 642 IKATDGFSLENLIGAGSFGSVYKGI---LNHDDHETLVAVKVLNLQHRGASKSFMAQCQA 698
IK D L+ +G G+FG V+ L+ + LVAVK L A K F + +
Sbjct: 12 IKRRD-IVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAEL 70
Query: 699 LRSVRHRNLVKIITSC 714
L +++H ++VK C
Sbjct: 71 LTNLQHEHIVKFYGVC 86
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNL-QHRGASKSFMAQCQALRSVRHRNLVKIIT 712
+G G+FGSV +G+ + VA+KVL + ++ M + Q + + + +V++I
Sbjct: 18 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77
Query: 713 SC 714
C
Sbjct: 78 VC 79
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 8 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 49
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 650 LENLIGAGSFGSVYKGI---LNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRN 706
L+ +G G+FG V+ L + + LVAVK L A K F + + L +++H +
Sbjct: 17 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEH 76
Query: 707 LVKIITSCA 715
+VK C
Sbjct: 77 IVKFYGVCV 85
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 69/183 (37%), Gaps = 55/183 (30%)
Query: 36 IGNLSFLRVLDLKNNSFRDEIP---QEIGYLFRL-------------------------- 66
+GN S LR LDL +N ++ P Q IG LF L
Sbjct: 168 LGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQN 226
Query: 67 ------QILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVH 120
Q+LA +TF G NL L L N L G L L LS+
Sbjct: 227 LSLANNQLLATSESTFSGL------KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLE 280
Query: 121 YNSLSGEIPSSFGNLSSLEFL-----------SAAANQFVGQFPETLSELKMMRYISFGE 169
YN++ P SF LS+L +L S A++ + F + LK + Y++ +
Sbjct: 281 YNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDF--SFQWLKYLEYLNMDD 338
Query: 170 NKL 172
N +
Sbjct: 339 NNI 341
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 64
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 10 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 51
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 10 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 51
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 17 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 58
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 64
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 14 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 55
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 16 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 57
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 634 LRVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVLNLQHRGAS--K 690
L+ ++++ F+L ++G G FGSV + L +D + VAVK+L +S +
Sbjct: 11 LKEKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIE 70
Query: 691 SFMAQCQALRSVRHRNLVKII 711
F+ + ++ H ++ K++
Sbjct: 71 EFLREAACMKEFDHPHVAKLV 91
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 16 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 57
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 129 PSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKL-SGEIPFSIYNLSSLT 187
P SF L+SLE L A + + +L ++ ++ N + S ++P NL++L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 188 HFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASN---LMRLTIAKNG 244
H +N +Q +DL F N +V N+ + PI A L LT+ N
Sbjct: 152 HVDLSYNYIQTITVNDLQFLRENPQV-NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 210
Query: 245 FSGRV--PSLENLYKLQWVSISHNH---LGNYGEKDNLE 278
S + L+NL L H H LG + ++ NLE
Sbjct: 211 NSSNIMKTCLQNLAGL------HVHRLILGEFKDERNLE 243
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 438 LDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQG-N 496
L L+ N + P +F L +L + E KL+ +G I L++L + NF
Sbjct: 80 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 139
Query: 497 IPSSFSSLRGMQNLDLSRN 515
+P+ FS+L + ++DLS N
Sbjct: 140 LPAYFSNLTNLVHVDLSYN 158
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 23/191 (12%)
Query: 90 LESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNL--SSLEFLSAAAN- 146
L+SL L +N+ G + K +L L L + N+LS S+ +L +SL L + N
Sbjct: 325 LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 382
Query: 147 ------QFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSL 200
F+G L+ ++++ F + L FS + LS Y + +
Sbjct: 383 AIIMSANFMG--------LEELQHLDFQHSTLKRVTEFSAF-LSLEKLLYLDISYTNTKI 433
Query: 201 PSDLGFT-LPNLEVLNVGGNQFTGPIPASI-SNASNLMRLTIAKNGFSG-RVPSLENLYK 257
D F L +L L + GN F +++ +N +NL L ++K + L++
Sbjct: 434 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 493
Query: 258 LQWVSISHNHL 268
LQ +++SHN+L
Sbjct: 494 LQLLNMSHNNL 504
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 17 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 58
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 454 GILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLS 513
G+ + +D+S NK++ L +C L+ L++K + +F SL +++LDLS
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 514 RNNLSGRIPKYF 525
N+LS +F
Sbjct: 109 DNHLSSLSSSWF 120
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 44 VLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLG---VNEL 100
V D ++ SF IP + + L+ + T+ G ++ C NL+ L L +N +
Sbjct: 35 VCDGRSRSF-TSIPSGLTAAMKSLDLSFNKITYIGH--GDLRACANLQVLILKSSRINTI 91
Query: 101 VGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQF 148
G LGSL L + H +SLS S FG LSSL++L+ N +
Sbjct: 92 EGDAFYSLGSLEHLDLSDNHLSSLSS---SWFGPLSSLKYLNLMGNPY 136
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 13 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 54
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 129 PSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKL-SGEIPFSIYNLSSLT 187
P SF L+SLE L A + + +L ++ ++ N + S ++P NL++L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 188 HFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASN---LMRLTIAKNG 244
H +N +Q +DL F N +V N+ + PI A L LT+ N
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQV-NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215
Query: 245 FSGRV--PSLENLYKLQWVSISHNH---LGNYGEKDNLE 278
S + L+NL L H H LG + ++ NLE
Sbjct: 216 NSSNIMKTCLQNLAGL------HVHRLILGEFKDERNLE 248
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 438 LDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQG-N 496
L L+ N + P +F L +L + E KL+ +G I L++L + NF
Sbjct: 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144
Query: 497 IPSSFSSLRGMQNLDLSRN 515
+P+ FS+L + ++DLS N
Sbjct: 145 LPAYFSNLTNLVHVDLSYN 163
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 23/191 (12%)
Query: 90 LESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNL--SSLEFLSAAAN- 146
L+SL L +N+ G + K +L L L + N+LS S+ +L +SL L + N
Sbjct: 330 LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 147 ------QFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSL 200
F+G L+ ++++ F + L FS + LS Y + +
Sbjct: 388 AIIMSANFMG--------LEELQHLDFQHSTLKRVTEFSAF-LSLEKLLYLDISYTNTKI 438
Query: 201 PSDLGFT-LPNLEVLNVGGNQFTGPIPASI-SNASNLMRLTIAKNGFSG-RVPSLENLYK 257
D F L +L L + GN F +++ +N +NL L ++K + L++
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498
Query: 258 LQWVSISHNHL 268
LQ +++SHN+L
Sbjct: 499 LQLLNMSHNNL 509
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLN 682
A + ++ +G GSFG VY+G+ D+ ET VA+K +N
Sbjct: 45 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 86
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 454 GILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLS 513
G+ + +D+S NK++ L +C L+ L++K + +F SL +++LDLS
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 514 RNNLSGRIPKYF 525
N+LS +F
Sbjct: 83 DNHLSSLSSSWF 94
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 44 VLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLG---VNEL 100
V D ++ SF IP + + L+ + T+ G ++ C NL+ L L +N +
Sbjct: 9 VCDGRSRSF-TSIPSGLTAAMKSLDLSFNKITYIGH--GDLRACANLQVLILKSSRINTI 65
Query: 101 VGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQF 148
G LGSL L + H +SLS S FG LSSL++L+ N +
Sbjct: 66 EGDAFYSLGSLEHLDLSDNHLSSLSS---SWFGPLSSLKYLNLMGNPY 110
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVL-NLQHRGASKSFMAQCQALRSVR 703
+ L IG G FG V++GI ++ L VA+K N + F+ + +R
Sbjct: 38 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 97
Query: 704 HRNLVKII 711
H ++VK+I
Sbjct: 98 HPHIVKLI 105
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154
Query: 710 IITSC 714
++ C
Sbjct: 155 LLGIC 159
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 67 QILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSG 126
Q L L+NN P H VNL+ L N+L G L++L L ++ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 127 EIPSSFGNLSSL 138
+F NL SL
Sbjct: 96 IPRGAFDNLKSL 107
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 54 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 113
Query: 710 IITSC 714
++ C
Sbjct: 114 LLGIC 118
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVL-NLQHRGASKSFMAQCQALRSVR 703
+ L IG G FG V++GI ++ L VA+K N + F+ + +R
Sbjct: 13 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 72
Query: 704 HRNLVKII 711
H ++VK+I
Sbjct: 73 HPHIVKLI 80
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVL-NLQHRGASKSFMAQCQALRSVR 703
+ L IG G FG V++GI ++ L VA+K N + F+ + +R
Sbjct: 7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66
Query: 704 HRNLVKII 711
H ++VK+I
Sbjct: 67 HPHIVKLI 74
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVL-NLQHRGASKSFMAQCQALRSVR 703
+ L IG G FG V++GI ++ L VA+K N + F+ + +R
Sbjct: 12 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 71
Query: 704 HRNLVKII 711
H ++VK+I
Sbjct: 72 HPHIVKLI 79
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 650 LENLIGAGSFGSVYKGILNHD-DHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNL 707
+E +IGAG FG V +G L E+ VA+K L + + F+++ + H N+
Sbjct: 18 IEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNI 77
Query: 708 VKI 710
+++
Sbjct: 78 IRL 80
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVL-NLQHRGASKSFMAQCQALRSVR 703
+ L IG G FG V++GI ++ L VA+K N + F+ + +R
Sbjct: 10 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 704 HRNLVKII 711
H ++VK+I
Sbjct: 70 HPHIVKLI 77
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 55 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 114
Query: 710 IITSC 714
++ C
Sbjct: 115 LLGIC 119
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 28 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 87
Query: 710 IITSC 714
++ C
Sbjct: 88 LLGIC 92
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 650 LENLIGAGSFGSVYKGILNHD-DHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNL 707
+E +IGAG FG V +G L E+ VA+K L + + F+++ + H N+
Sbjct: 20 IEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNI 79
Query: 708 VKI 710
+++
Sbjct: 80 IRL 82
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVKVL-NLQHRGASKSFMAQCQALRSVR 703
+ L IG G FG V++GI ++ L VA+K N + F+ + +R
Sbjct: 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 74
Query: 704 HRNLVKII 711
H ++VK+I
Sbjct: 75 HPHIVKLI 82
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 35 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 94
Query: 710 IITSC 714
++ C
Sbjct: 95 LLGIC 99
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 34 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 93
Query: 710 IITSC 714
++ C
Sbjct: 94 LLGIC 98
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 33 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 92
Query: 710 IITSC 714
++ C
Sbjct: 93 LLGIC 97
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 36 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 710 IITSC 714
++ C
Sbjct: 96 LLGIC 100
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 653 LIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVKI 710
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++ +
Sbjct: 37 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 711 ITSC 714
+ C
Sbjct: 97 LGIC 100
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 653 LIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVKI 710
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++ +
Sbjct: 42 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 101
Query: 711 ITSC 714
+ C
Sbjct: 102 LGIC 105
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 35 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 94
Query: 710 IITSC 714
++ C
Sbjct: 95 LLGIC 99
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ--HRGASKSFMAQCQALR- 700
AT + IG G++G+VYK H H VA+K + + G S + + LR
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGH--FVALKSVRVPNGEEGLPISTVREVALLRR 59
Query: 701 --SVRHRNLVKIITSCA 715
+ H N+V+++ CA
Sbjct: 60 LEAFEHPNVVRLMDVCA 76
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 36 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 710 IITSC 714
++ C
Sbjct: 96 LLGIC 100
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 653 LIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVKI 710
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++ +
Sbjct: 38 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 97
Query: 711 ITSC 714
+ C
Sbjct: 98 LGIC 101
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ--HRGASKSFMAQCQALR- 700
AT + IG G++G+VYK H H VA+K + + G S + + LR
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGH--FVALKSVRVPNGEEGLPISTVREVALLRR 59
Query: 701 --SVRHRNLVKIITSCA 715
+ H N+V+++ CA
Sbjct: 60 LEAFEHPNVVRLMDVCA 76
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 652 NLIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVK 709
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++
Sbjct: 31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90
Query: 710 IITSC 714
++ C
Sbjct: 91 LLGIC 95
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ---HRGASKSFMAQCQALRSV 702
D F + IG GSFG V I+ +D + + A+K +N Q R ++ + Q ++ +
Sbjct: 15 DHFEILRAIGKGSFGKV--CIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGL 72
Query: 703 RHRNLVKIITS 713
H LV + S
Sbjct: 73 EHPFLVNLWYS 83
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 653 LIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVKI 710
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++ +
Sbjct: 38 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 97
Query: 711 ITSC 714
+ C
Sbjct: 98 LGIC 101
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNL 683
N+ + F+ IG GSFG V+KGI N + +VA+K+++L
Sbjct: 17 NIADPEELFTKLERIGKGSFGEVFKGIDNRT--QQVVAIKIIDL 58
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
IG G FG V G D VAVK + ++ +++F+A+ + +RH NLV+++
Sbjct: 20 IGKGEFGDVMLG----DYRGNKVAVKCI--KNDATAQAFLAEASVMTQLRHSNLVQLL 71
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 14 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 72
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 73 YVMASVDNPHVCRLLGIC 90
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ--HRGASKSFMAQCQALR- 700
AT + IG G++G+VYK H H VA+K + + G S + + LR
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGH--FVALKSVRVPNGEEGLPISTVREVALLRR 59
Query: 701 --SVRHRNLVKIITSCA 715
+ H N+V+++ CA
Sbjct: 60 LEAFEHPNVVRLMDVCA 76
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N+ T VAVK L + ++F+ + +++++H
Sbjct: 12 ESIKLVKKLGAGQFGEVWMGYYNNS---TKVAVKTLK-PGTMSVQAFLEEANLMKTLQHD 67
Query: 706 NLVKI 710
LV++
Sbjct: 68 KLVRL 72
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 35 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 93
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 94 YVMASVDNPHVCRLLGIC 111
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR 705
+ L +GAG FG V+ G N+ T VAVK L + ++F+ + +++++H
Sbjct: 13 ESIKLVKRLGAGQFGEVWMGYYNNS---TKVAVKTLK-PGTMSVQAFLEEANLMKTLQHD 68
Query: 706 NLVKI 710
LV++
Sbjct: 69 KLVRL 73
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 653 LIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVKI 710
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++ +
Sbjct: 35 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 94
Query: 711 ITSC 714
+ C
Sbjct: 95 LGIC 98
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKI 710
+G G FG V+ G N + T VA+K L + +SF+ + Q ++ ++H LV++
Sbjct: 17 LGNGQFGEVWMGTWNGN---TKVAIKTLK-PGTMSPESFLEEAQIMKKLKHDKLVQL 69
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 12 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 71 YVMASVDNPHVCRLLGIC 88
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 653 LIGAGSFGSVYKG-ILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLVKI 710
+IG G FG VY G +L++D + AVK LN + G F+ + ++ H N++ +
Sbjct: 37 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 711 ITSC 714
+ C
Sbjct: 97 LGIC 100
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 11 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 69
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 70 YVMASVDNPHVCRLLGIC 87
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
IG G FG V G D VAVK + ++ +++F+A+ + +RH NLV+++
Sbjct: 14 IGKGEFGDVMLG----DYRGNKVAVKCI--KNDATAQAFLAEASVMTQLRHSNLVQLL 65
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 12 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 71 YVMASVDNPHVCRLLGIC 88
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 13 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 72 YVMASVDNPHVCRLLGIC 89
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 10 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 69 YVMASVDNPHVCRLLGIC 86
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 13 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 72 YVMASVDNPHVCRLLGIC 89
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 652 NLIGAGSFGSVYKGILNHDDHETLVAVK----VLNLQHRGASKSFMAQCQALRSVRHRNL 707
N G G FG VYKG +N+ T VAVK ++++ + F + + +H NL
Sbjct: 28 NKXGEGGFGVVYKGYVNN----TTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENL 83
Query: 708 VKII 711
V+++
Sbjct: 84 VELL 87
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 646 DGFSLENLIGAGSFGSVYKGI-LNHDDHETLVAVKVL-NLQHRGASKSFMAQCQALRSVR 703
+ L IG G FG V++GI ++ ++ VA+K N + F+ + +R
Sbjct: 10 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 704 HRNLVKII 711
H ++VK+I
Sbjct: 70 HPHIVKLI 77
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 12 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 71 YVMASVDNPHVCRLLGIC 88
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 646 DGFSLENLIGAGSFGSVYKGI-LNHDDHETLVAVKVL-NLQHRGASKSFMAQCQALRSVR 703
+ L IG G FG V++GI ++ ++ VA+K N + F+ + +R
Sbjct: 10 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 704 HRNLVKII 711
H ++VK+I
Sbjct: 70 HPHIVKLI 77
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 11 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 69
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 70 YVMASVDNPHVCRLLGIC 87
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 10 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 69 YVMASVDNPHVCRLLGIC 86
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
IG G FG V G D VAVK + ++ +++F+A+ + +RH NLV+++
Sbjct: 29 IGKGEFGDVMLG----DYRGNKVAVKCI--KNDATAQAFLAEASVMTQLRHSNLVQLL 80
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
IG G FG V G D VAVK + ++ +++F+A+ + +RH NLV+++
Sbjct: 201 IGKGEFGDVMLG----DYRGNKVAVKCI--KNDATAQAFLAEASVMTQLRHSNLVQLL 252
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 17 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 76 YVMASVDNPHVCRLLGIC 93
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 12 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 71 YVMASVDNPHVCRLLGIC 88
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 10 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 69 YVMASVDNPHVCRLLGIC 86
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 13 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 72 YVMASVDNPHVCRLLGIC 89
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 10 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 69 YVMASVDNPHVCRLLGIC 86
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 17 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 76 YVMASVDNPHVCRLLGIC 93
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 16 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 74
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 75 YVMASVDNPHVCRLLGIC 92
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 653 LIGAGSFGSVYKGILNHDDHETLVAVKVL--NLQHRGASKSFMAQCQALRSVRHRNLVKI 710
L+G GS+G V K + D +VA+K + + K M + + L+ +RH NLV +
Sbjct: 32 LVGEGSYGMVMK--CRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNL 89
Query: 711 ITSC 714
+ C
Sbjct: 90 LEVC 93
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 646 DGFSLENLIGAGSFGSVYKGI-LNHDDHETLVAVKVL-NLQHRGASKSFMAQCQALRSVR 703
+ L IG G FG V++GI ++ ++ VA+K N + F+ + +R
Sbjct: 10 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 704 HRNLVKII 711
H ++VK+I
Sbjct: 70 HPHIVKLI 77
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 13 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 72 YVMASVDNPHVCRLLGIC 89
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 210 NLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS--LENLYKLQWVSISHNH 267
+LE L + N+ + ++L++L +++N F G + S ENL KL+ + +S+NH
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH 358
Query: 268 LGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNN 322
+ G++ L L N L L D N +P+ + + T L+K+ + N
Sbjct: 359 IRALGDQSFL----GLPNLKELAL----DTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 84 ISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSA 143
SH +LE L L NE+ L+ L L++ N L F NL LE L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 144 AANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYN-LSSLTHFYFPFNQLQGSLP 201
+ N ++ L ++ ++ N+L +P I++ L+SL + N S P
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 12 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 71 YVMASVDNPHVCRLLGIC 88
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 20 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 78
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 79 YVMASVDNPHVCRLLGIC 96
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 648 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNL 683
F+ IG GSFG V+KGI N + +VA+K+++L
Sbjct: 24 FTKLEKIGKGSFGEVFKGIDNRT--QKVVAIKIIDL 57
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 7 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 65
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 66 YVMASVDNPHVCRLLGIC 83
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 65 RLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSL 124
++++L LHNN IP +++H L+ L + N+L G L+ L + +H N
Sbjct: 451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 125 SGEIP 129
P
Sbjct: 510 DCTCP 514
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 8/161 (4%)
Query: 45 LDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGG--QIPDNISHCVNLESLGLGVNELVG 102
L+ N F D + Q L RLQ L L N ++ + +LE+L + +N L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 103 KVPGKLGSLSK-LWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKM 161
+ + ++ + +L++ N L+G + F L + N + P+ ++ L+
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMSIPKDVTHLQA 474
Query: 162 MRYISFGENKLSGEIPFSIYN-LSSLTHFYFPFNQLQGSLP 201
++ ++ N+L +P +++ L+SL + + N + P
Sbjct: 475 LQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 14 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 72
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 73 YVMASVDNPHVCRLLGIC 90
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 10 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 69 YVMASVDNPHVCRLLGIC 86
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNL 683
IG GSFG V+KGI N + +VA+K+++L
Sbjct: 15 IGKGSFGEVFKGIDNRT--QKVVAIKIIDL 42
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNL 683
IG GSFG V+KGI N + +VA+K+++L
Sbjct: 15 IGKGSFGEVFKGIDNRT--QKVVAIKIIDL 42
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 652 NLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQ---ALRSVRHRNLV 708
++G+G FG+V+KG+ + + V + ++ + +SF A A+ S+ H ++V
Sbjct: 37 KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIV 96
Query: 709 KIITSC 714
+++ C
Sbjct: 97 RLLGLC 102
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++G+G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 4 RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 62
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 63 YVMASVDNPHVCRLLGIC 80
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 654 IGAGSFGSVYKGI-LNHDDHETLVAVKVL-NLQHRGASKSFMAQCQALRSVRHRNLVKII 711
IG G FG V++GI ++ ++ VA+K N + F+ + +R H ++VK+I
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNL 683
IG GSFG V+KGI N + +VA+K+++L
Sbjct: 35 IGKGSFGEVFKGIDNRT--QKVVAIKIIDL 62
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 654 IGAGSFGSVYKGI-LNHDDHETLVAVKVL-NLQHRGASKSFMAQCQALRSVRHRNLVKII 711
IG G FG V++GI ++ ++ VA+K N + F+ + +R H ++VK+I
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 652 NLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQ---ALRSVRHRNLV 708
++G+G FG+V+KG+ + + V + ++ + +SF A A+ S+ H ++V
Sbjct: 19 KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIV 78
Query: 709 KIITSC 714
+++ C
Sbjct: 79 RLLGLC 84
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 49 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 712 TSC 714
C
Sbjct: 109 GVC 111
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 25 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 712 TSC 714
C
Sbjct: 85 GVC 87
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 712 TSC 714
C
Sbjct: 78 GVC 80
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 712 TSC 714
C
Sbjct: 78 GVC 80
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 19 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 78
Query: 712 TSC 714
C
Sbjct: 79 GVC 81
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 23 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 712 TSC 714
C
Sbjct: 83 GVC 85
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 712 TSC 714
C
Sbjct: 81 GVC 83
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 712 TSC 714
C
Sbjct: 81 GVC 83
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 16 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 712 TSC 714
C
Sbjct: 76 GVC 78
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILNHDDH-ETLVAVKVLNLQHRG-----ASKSFMAQCQ 697
AT + IG G++G+VYK H H L +V+V N G ++ +A +
Sbjct: 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLR 66
Query: 698 ALRSVRHRNLVKIITSCA 715
L + H N+V+++ CA
Sbjct: 67 RLEAFEHPNVVRLMDVCA 84
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 24 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 712 TSC 714
C
Sbjct: 84 GVC 86
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 17 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 712 TSC 714
C
Sbjct: 77 GVC 79
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 712 TSC 714
C
Sbjct: 78 GVC 80
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 712 TSC 714
C
Sbjct: 81 GVC 83
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 22 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 712 TSC 714
C
Sbjct: 82 GVC 84
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 712 TSC 714
C
Sbjct: 96 GVC 98
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 654 IGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FGSV + D+ +VAVK L + F + + L+S++H N+VK
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 712 TSC 714
C
Sbjct: 96 GVC 98
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKI 710
IG G++G VYK N+ + L ++ L + G + + + L+ ++H N+VK+
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIR-LEKEDEGIPSTTIREISILKELKHSNIVKL 65
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKI 710
IG G++G VYK N+ + L ++ L + G + + + L+ ++H N+VK+
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIR-LEKEDEGIPSTTIREISILKELKHSNIVKL 65
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKI 710
IG G++G VYK N+ + L ++ L + G + + + L+ ++H N+VK+
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIR-LEKEDEGIPSTTIREISILKELKHSNIVKL 65
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 88/234 (37%), Gaps = 43/234 (18%)
Query: 55 EIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKL 114
E+PQ I R L L N D H +LE L LG N + G L+ L
Sbjct: 68 EVPQGIPSNTR--YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 115 WILSVHYNSLSGEIPS-SFGNLSSLEFL-----------SAAANQFVGQFPETLSELKMM 162
L + N L+ IPS +F LS L L S A N+ L ELK +
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184
Query: 163 RYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFT 222
YIS G + ++NL L + P L LE L + GN F
Sbjct: 185 EYISEGAFE-------GLFNLKYLNLGMCNIKDMPNLTP------LVGLEELEMSGNHFP 231
Query: 223 GPIPASISNASNLMRLT--------IAKNGFSGRVPSLENLYKLQWVSISHNHL 268
P S S+L +L I +N F G +E ++++HN+L
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE-------LNLAHNNL 278
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 91/224 (40%), Gaps = 16/224 (7%)
Query: 80 IPDNISHCVN-LESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSL 138
I N HC + L+ L L L ++P L LS L L + N S N SL
Sbjct: 269 ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327
Query: 139 EFLSAAANQFVGQFPE-TLSELKMMRYISFGENKL--SGEIPFSIYNLSSLTHFYFPFNQ 195
LS N + L L+ +R + + + S + NLS L +N+
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 196 LQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENL 255
SL ++ P LE+L++ + + + S NL L + S S E L
Sbjct: 388 -PLSLKTEAFKECPQLELLDLAFTRL--KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444
Query: 256 YK----LQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEIS 295
+ LQ +++ GN+ K N++ NSL RLE+L +S
Sbjct: 445 FDGLPALQHLNLQ----GNHFPKGNIQKTNSLQTLGRLEILVLS 484
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 19/135 (14%)
Query: 208 LPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNH 267
LPNL LN+ NQ T P I N+ +L + N + P L NL L W+ + N
Sbjct: 65 LPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 121
Query: 268 L-------------GNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRL 314
+ E + + +N LV+ +LE L + +N + V + T+L
Sbjct: 122 VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKL 178
Query: 315 RKLIVGNNQLFGNIP 329
L + +NQ+ +P
Sbjct: 179 DTLSLEDNQISDIVP 193
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 648 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNL 683
F L L+G G++G VYKG H L A+KV+++
Sbjct: 26 FELVELVGNGTYGQVYKG--RHVKTGQLAAIKVMDV 59
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 38/252 (15%)
Query: 35 HIGNLSFLRVLDLKNNSFRD--EIPQEIGYLF----RLQILA-LHNNTFGGQIPDNISHC 87
+ N SFL+++D+ NNS + ++P + ++ +L+ L L N F I + +
Sbjct: 148 ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207
Query: 88 VNLESLGLGVNELVG--KVPGKLGSLSKLWILSVHY--NSLSGEIPSSFGNLSSLEFLSA 143
L L L + +V + +L L L L+ Y N+L +P SLE L+
Sbjct: 208 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPP---SLEALNV 264
Query: 144 AANQFVGQFPETLSELKMMRYISFGENKLSG--EIPFSIYNLSSLTHFYFPFNQLQGSLP 201
N ++ PE L ++ EN SG E+P ++Y L++ + N+++
Sbjct: 265 RDN-YLTDLPELPQSLT---FLDVSENIFSGLSELPPNLYYLNASS------NEIRS--- 311
Query: 202 SDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWV 261
L P+LE LNV N+ +PA L RL IA VP L L+ +
Sbjct: 312 --LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERL-IASFNHLAEVPELPQ--NLKQL 362
Query: 262 SISHNHLGNYGE 273
+ +N L + +
Sbjct: 363 HVEYNPLREFPD 374
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 79 QIPDNISHCVNLESLGLGVNELVGKVPGK---LGSLSKLWILSVHYNSLSGEIPSSFGNL 135
IP N++ V LE L L N L PG L SL KLW++ ++ ++F +L
Sbjct: 170 DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER---NAFDDL 225
Query: 136 SSLEFLSAAANQFVGQFPETLSELKMMRYISFGEN 170
SLE L+ + N + + + L + + N
Sbjct: 226 KSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 35 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 94
Query: 706 NLVKI 710
N++++
Sbjct: 95 NIIRL 99
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 18 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 77
Query: 706 NLVKI 710
N++++
Sbjct: 78 NIIRL 82
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 18 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 77
Query: 706 NLVKI 710
N++++
Sbjct: 78 NIIRL 82
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 706 NLVKI 710
N++++
Sbjct: 107 NIIRL 111
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 706 NLVKI 710
N++++
Sbjct: 107 NIIRL 111
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FG VYK + + L A KV+ + + ++ + + L + H +VK++
Sbjct: 19 LGDGAFGKVYKA--KNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLL 74
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 706 NLVKI 710
N++++
Sbjct: 107 NIIRL 111
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 156 LSELKMMRYISFGENKLSGEIPFSIYN-LSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVL 214
L EL + Y+ N+L +P +++ L++L NQLQ SLP + L NL L
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYL 138
Query: 215 NVGGNQFTGPIPASISNASNLMRLTIAKN 243
N+ NQ +NL L ++ N
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 80 IPDNI-SHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSL 138
+PD + NL L L N+L G L+ L L + YN L F L+ L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 139 EFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIP 177
+ L NQ L ++YI +N P
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 88 VNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQ 147
NL+ L L N+L G L+ L L++ +N L F L++L L + NQ
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168
Query: 148 FVGQFPE-TLSELKMMRYISFGENKLSGEIPFSIYN-LSSLTHFYFPFNQLQGSLP 201
PE +L ++ + +N+L +P +++ L+SL + + N + P
Sbjct: 169 L-QSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 3/146 (2%)
Query: 378 SSIGNLTSLAILAFDENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIY 437
S++ LT+L L N L+ S+P+ + ++P V + Y
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 438 LDLSQNQLNGSLPPN-FGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGN 496
L+L+ NQL SLP F L NL +D+S N+L +L++L + N +
Sbjct: 138 LNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 497 IPSSFSSLRGMQNLDLSRNNLSGRIP 522
F L +Q + L N P
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 706 NLVKI 710
N++++
Sbjct: 107 NIIRL 111
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 706 NLVKI 710
N++++
Sbjct: 107 NIIRL 111
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 79 QIPDNISHCVNLESLGLGVNELVGKVPGK---LGSLSKLWILSVHYNSLSGEIPSSFGNL 135
IP N++ V LE L L N L PG L SL KLW++ ++ ++F +L
Sbjct: 170 DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER---NAFDDL 225
Query: 136 SSLEFLSAAANQFVGQFPETLSELKMMRYISFGEN 170
SLE L+ + N + + + L + + N
Sbjct: 226 KSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 45 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 104
Query: 706 NLVKI 710
N++++
Sbjct: 105 NIIRL 109
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 706 NLVKI 710
N++++
Sbjct: 107 NIIRL 111
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 706 NLVKI 710
N++++
Sbjct: 107 NIIRL 111
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 706 NLVKI 710
N++++
Sbjct: 107 NIIRL 111
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
S++ ++GAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 706 NLVKI 710
N++++
Sbjct: 107 NIIRL 111
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
+G G+FG VYK + + L A KV+ + + ++ + + L + H +VK++
Sbjct: 27 LGDGAFGKVYKA--KNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLL 82
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQHRGAS-KSFMAQCQALRSVRHR 705
+E +IG G FG V G L E VA+K L + + F+++ + H
Sbjct: 31 IKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHP 90
Query: 706 NLVK---IITSC 714
N++ ++T C
Sbjct: 91 NIIHLEGVVTKC 102
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQHRGAS-KSFMAQCQALRSVRHR 705
+E +IG G FG V G L E VA+K L + + F+++ + H
Sbjct: 10 IKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHP 69
Query: 706 NLVK---IITSC 714
N++ ++T C
Sbjct: 70 NIIHLEGVVTKC 81
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQHRGAS-KSFMAQCQALRSVRHR 705
+E +IG G FG V G L E VA+K L + + F+++ + H
Sbjct: 16 IKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHP 75
Query: 706 NLVK---IITSC 714
N++ ++T C
Sbjct: 76 NIIHLEGVVTKC 87
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 648 FSLENLIGAGSFGSVYKGILNHDDHET-LVAVKVLNLQHRGASKSFMAQCQALRSVRHRN 706
F +E IG G F VY+ D L V++ +L A + + L+ + H N
Sbjct: 34 FRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN 93
Query: 707 LVKIITS 713
++K S
Sbjct: 94 VIKYYAS 100
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 648 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHR 705
++E +IGAG FG V G L E VA+K L + + + F+ + + H
Sbjct: 24 ITIERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 83
Query: 706 NLVKI 710
N++ +
Sbjct: 84 NIIHL 88
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++ +G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 10 RILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 69 YVMASVDNPHVCRLLGIC 86
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++ +G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 17 RILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 76 YVMASVDNPHVCRLLGIC 93
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 159 LKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGG 218
L+ ++ + +++ P + LS+L Y NQ+ P G T NL+ L++G
Sbjct: 112 LQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISPL-AGLT--NLQYLSIGN 166
Query: 219 NQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNL 277
NQ P ++N S L L N S P L +L L V + N + + NL
Sbjct: 167 NQVNDLTP--LANLSKLTTLRADDNKISDISP-LASLPNLIEVHLKDNQISDVSPLANL 222
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC 696
++K T+ F ++ +G+FG+VYKG+ + + + V + L+ A+K + +
Sbjct: 17 RILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 697 QALRSVRHRNLVKIITSC 714
+ SV + ++ +++ C
Sbjct: 76 YVMASVDNPHVCRLLGIC 93
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVL---NLQHRGASKSFMAQCQALRSV 702
D F + +G G FG+VY + ++ ++A+KVL L+ G + + +
Sbjct: 14 DDFDIVRPLGKGKFGNVY--LAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL 71
Query: 703 RHRNLVKI 710
RH N++++
Sbjct: 72 RHPNILRM 79
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 652 NLIGAGSFGSVYKGILNHDDH--ETLVAVKVLN 682
++G+G+FG+VYKGI D + VA+KVL
Sbjct: 23 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLR 55
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 26/103 (25%)
Query: 438 LDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLG----------------SCI 481
+DLS NQ++ P F L++L + + NK++ E+P SL +C+
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCL 119
Query: 482 RLEE---------LVMKGNFFQGNIPSSFSSLRGMQNLDLSRN 515
R++ L + N Q +FS LR +Q + L++N
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 632 SVLRVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKS 691
S+++ ++N I+ TDG+ ++ IG GS+ + I H AVK+++ R ++
Sbjct: 8 SIVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCI--HKATNXEFAVKIIDKSKRDPTEE 65
Query: 692 FMAQCQALRSVRHRNLVKI 710
LR +H N++ +
Sbjct: 66 IEI---LLRYGQHPNIITL 81
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 632 SVLRVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKS 691
S+++ ++N I+ TDG+ ++ IG GS+ + I H AVK+++ R ++
Sbjct: 8 SIVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCI--HKATNMEFAVKIIDKSKRDPTEE 65
Query: 692 FMAQCQALRSVRHRNLVKI 710
LR +H N++ +
Sbjct: 66 IEI---LLRYGQHPNIITL 81
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALR--- 700
A + E IG G FG V+KG L D +++VA+K L L + + Q +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKD--KSVVAIKSLILGDSEGETEMIEKFQEFQREV 74
Query: 701 ----SVRHRNLVKI 710
++ H N+VK+
Sbjct: 75 FIMSNLNHPNIVKL 88
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALR--- 700
A + E IG G FG V+KG L D +++VA+K L L + + Q +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKD--KSVVAIKSLILGDSEGETEMIEKFQEFQREV 74
Query: 701 ----SVRHRNLVKI 710
++ H N+VK+
Sbjct: 75 FIMSNLNHPNIVKL 88
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALR--- 700
A + E IG G FG V+KG L D +++VA+K L L + + Q +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKD--KSVVAIKSLILGDSEGETEMIEKFQEFQREV 74
Query: 701 ----SVRHRNLVKI 710
++ H N+VK+
Sbjct: 75 FIMSNLNHPNIVKL 88
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVL---NLQHRGASKSFMAQCQALRSV 702
D F + +G G FG+VY + ++ ++A+KVL L+ G + + +
Sbjct: 15 DDFDIGRPLGKGKFGNVY--LAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL 72
Query: 703 RHRNLVKI 710
RH N++++
Sbjct: 73 RHPNILRM 80
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVK--VLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
IG G+FG V+K H VA+K ++ + G + + + + L+ ++H N+V +I
Sbjct: 26 IGQGTFGEVFKA--RHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI 83
Query: 712 TSC 714
C
Sbjct: 84 EIC 86
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVL---NLQHRGASKSFMAQCQALRSV 702
D F + +G G FG+VY + ++ ++A+KVL L+ G + + +
Sbjct: 14 DDFDIGRPLGKGKFGNVY--LAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL 71
Query: 703 RHRNLVKI 710
RH N++++
Sbjct: 72 RHPNILRM 79
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 649 SLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRN 706
+E +IGAG FG V G L E VA+K L + + F+++ + H N
Sbjct: 36 KIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPN 95
Query: 707 LVKI 710
++ +
Sbjct: 96 VIHL 99
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVK--VLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
IG G+FG V+K H VA+K ++ + G + + + + L+ ++H N+V +I
Sbjct: 26 IGQGTFGEVFKA--RHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI 83
Query: 712 TSC 714
C
Sbjct: 84 EIC 86
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVK--VLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
IG G+FG V+K H VA+K ++ + G + + + + L+ ++H N+V +I
Sbjct: 26 IGQGTFGEVFKA--RHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI 83
Query: 712 TSC 714
C
Sbjct: 84 EIC 86
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 90 LESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFV 149
L+ L L E+ G SLS L L + N + +F LSSL+ L A
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 150 G--QFPETLSELKMMRYISFGENKL-SGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDL 204
FP + LK ++ ++ N + S ++P NL++L H N++Q +DL
Sbjct: 116 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 654 IGAGSFGSVYKGILNHDDHETLVAVK--VLNLQHRGASKSFMAQCQALRSVRHRNLVKII 711
IG G+FG V+K H VA+K ++ + G + + + + L+ ++H N+V +I
Sbjct: 25 IGQGTFGEVFKA--RHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI 82
Query: 712 TSC 714
C
Sbjct: 83 EIC 85
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 649 SLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRN 706
+E +IGAG FG V G L + VA+K L + + + F+ + + H N
Sbjct: 46 KIERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPN 105
Query: 707 LVKI 710
+V +
Sbjct: 106 VVHL 109
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 90 LESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFV 149
L+ L L E+ G SLS L L + N + +F LSSL+ L A
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 150 G--QFPETLSELKMMRYISFGENKL-SGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDL 204
FP + LK ++ ++ N + S ++P NL++L H N++Q +DL
Sbjct: 115 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 430 GLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMK 489
G+ + + LDL +N++ F +L ++++EN +S P + + L L ++
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 490 GNFFQGNIPSSFSSLRGMQNLDLSRNNL 517
N + F+ L + LD+S N +
Sbjct: 89 SNRLKLIPLGVFTGLSNLTKLDISENKI 116
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 90 LESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFV 149
L+ L L E+ G SLS L L + N + +F LSSL+ L A
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 150 G--QFPETLSELKMMRYISFGENKL-SGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDL 204
FP + LK ++ ++ N + S ++P NL++L H N++Q +DL
Sbjct: 115 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 462 IDISENKLSGEIPNSLGSCIRLEELVMKGNFFQ--GNIPSSFSSLRGMQNLDLSRNNLS 518
+D S N L+ + + G LE L+++ N + I + ++ +Q LD+S+N++S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 650 LENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNL 707
+E +IGAG FG V G L E VA+K L + + F+++ + H N+
Sbjct: 11 IEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNV 70
Query: 708 VKI 710
+ +
Sbjct: 71 IHL 73
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 90 LESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFV 149
L+ L L E+ G SLS L L + N + +F LSSL+ L A
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 150 G--QFPETLSELKMMRYISFGENKL-SGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDL 204
FP + LK ++ ++ N + S ++P NL++L H N++Q +DL
Sbjct: 114 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
pdb|4EUU|B Chain B, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
Length = 319
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 650 LENLIGAGSFGSVYKGILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLV 708
L +++G G+ +V++G H L A+KV N + M + + L+ + H+N+V
Sbjct: 13 LSDILGQGATANVFRG--RHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIV 70
Query: 709 KIIT 712
K+
Sbjct: 71 KLFA 74
>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
pdb|4EUT|B Chain B, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
Length = 396
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 650 LENLIGAGSFGSVYKGILNHDDHETLVAVKVLN-LQHRGASKSFMAQCQALRSVRHRNLV 708
L +++G G+ +V++G H L A+KV N + M + + L+ + H+N+V
Sbjct: 13 LSDILGQGATANVFRG--RHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIV 70
Query: 709 KI 710
K+
Sbjct: 71 KL 72
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 208 LPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNH 267
LP LE L +G N+ T +S + L L++ N VP L L KLQ + +S NH
Sbjct: 131 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIVP-LARLTKLQNLYLSKNH 187
Query: 268 LGN 270
+ +
Sbjct: 188 ISD 190
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVL---NLQHRGASKSFMAQCQALR 700
A + F + +G G FG+VY + + ++A+KVL L+ G + +
Sbjct: 3 ALEDFEIGRPLGKGKFGNVY--LAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQS 60
Query: 701 SVRHRNLVKI 710
+RH N++++
Sbjct: 61 HLRHPNILRL 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,033,542
Number of Sequences: 62578
Number of extensions: 751089
Number of successful extensions: 2958
Number of sequences better than 100.0: 418
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 352
Number of HSP's that attempted gapping in prelim test: 2198
Number of HSP's gapped (non-prelim): 747
length of query: 715
length of database: 14,973,337
effective HSP length: 106
effective length of query: 609
effective length of database: 8,340,069
effective search space: 5079102021
effective search space used: 5079102021
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)