Query 046340
Match_columns 715
No_of_seqs 477 out of 4712
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.8E-70 1.3E-74 625.8 47.3 562 1-569 37-744 (768)
2 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-61 1.6E-65 546.3 46.9 562 4-568 11-625 (680)
3 3rgz_A Protein brassinosteroid 100.0 4.5E-61 1.5E-65 550.6 41.6 518 16-546 126-744 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-57 4.4E-62 518.1 47.7 523 16-547 49-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.4E-57 4.6E-62 511.0 41.4 515 16-546 33-564 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 9.5E-57 3.3E-61 504.1 41.3 515 15-548 31-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.2E-56 4E-61 503.4 38.0 529 20-567 16-562 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-55 1.9E-59 505.3 35.7 510 15-547 23-565 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-54 4.8E-59 486.5 37.2 527 19-568 14-561 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-54 8E-59 500.2 38.4 522 20-568 8-563 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 5.2E-51 1.8E-55 454.5 35.7 490 16-548 28-537 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-50 1.2E-54 445.4 34.3 497 3-546 3-514 (549)
13 4eco_A Uncharacterized protein 100.0 7.1E-51 2.4E-55 455.3 22.8 457 2-522 65-604 (636)
14 4g8a_A TOLL-like receptor 4; l 100.0 8E-49 2.7E-53 443.3 38.0 527 4-548 38-586 (635)
15 2z63_A TOLL-like receptor 4, v 100.0 2.7E-48 9.3E-53 432.6 37.5 511 21-568 12-534 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-48 7.3E-53 431.1 32.4 480 4-522 12-514 (549)
17 4ecn_A Leucine-rich repeat pro 100.0 4.9E-48 1.7E-52 438.1 30.3 472 7-516 315-862 (876)
18 4g8a_A TOLL-like receptor 4; l 100.0 2E-46 6.7E-51 423.7 39.1 528 21-567 36-582 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-47 4.6E-52 421.3 27.3 459 19-548 3-487 (520)
20 4eco_A Uncharacterized protein 100.0 5.9E-47 2E-51 423.6 18.4 444 40-545 81-603 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 2.4E-45 8E-50 416.2 23.5 468 40-543 323-865 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-44 4.4E-49 400.7 28.5 466 18-548 33-516 (562)
23 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-44 5E-49 397.2 26.6 460 43-567 3-483 (520)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.4E-42 2.9E-46 378.2 28.8 460 37-567 28-512 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 7.5E-41 2.6E-45 361.4 27.2 382 21-425 15-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.1E-39 3.7E-44 352.3 27.7 376 4-401 8-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 3.4E-38 1.1E-42 337.0 27.3 409 39-525 10-436 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.3E-38 4.4E-43 340.3 20.8 418 63-566 10-430 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 1.6E-37 5.4E-42 337.1 23.2 347 187-570 14-361 (477)
30 1o6v_A Internalin A; bacterial 100.0 1.5E-35 5E-40 320.0 35.3 343 17-422 47-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 7.4E-36 2.5E-40 322.3 32.6 347 38-448 44-390 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-36 7.4E-41 323.3 27.3 324 27-421 29-352 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 2.8E-35 9.6E-40 319.5 30.6 320 19-421 14-333 (477)
34 1ogq_A PGIP-2, polygalacturona 100.0 3.8E-36 1.3E-40 306.0 19.9 263 2-267 32-302 (313)
35 3bz5_A Internalin-J, INLJ; leu 100.0 3.9E-35 1.3E-39 313.6 28.4 365 52-525 30-394 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 1.3E-33 4.4E-38 297.8 28.0 313 36-422 41-353 (390)
37 4fmz_A Internalin; leucine ric 100.0 7.5E-33 2.6E-37 287.3 27.6 308 35-397 39-346 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 1.2E-32 4.3E-37 290.2 27.9 307 16-349 45-352 (390)
39 4fmz_A Internalin; leucine ric 100.0 1.9E-32 6.4E-37 284.3 27.8 303 15-348 43-345 (347)
40 3oja_B Anopheles plasmodium-re 100.0 2.1E-32 7.3E-37 304.2 30.1 311 38-422 49-359 (597)
41 3oja_B Anopheles plasmodium-re 100.0 8.4E-33 2.9E-37 307.5 24.1 343 183-577 50-392 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-33 1.5E-37 283.4 19.3 253 313-568 51-307 (313)
43 1z7x_W Ribonuclease inhibitor; 100.0 4.7E-34 1.6E-38 308.8 0.3 360 16-398 3-412 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.7E-31 1.9E-35 270.9 23.2 293 40-370 33-330 (332)
45 1xku_A Decorin; proteoglycan, 100.0 1.4E-30 4.8E-35 267.9 25.9 295 40-371 31-330 (330)
46 1xku_A Decorin; proteoglycan, 100.0 3.3E-30 1.1E-34 265.1 26.3 267 137-444 53-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 4.3E-34 1.5E-38 309.1 -4.3 383 112-542 3-440 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 4.5E-30 1.5E-34 264.2 24.2 245 288-542 55-307 (332)
49 4fcg_A Uncharacterized protein 100.0 1.7E-29 5.7E-34 258.4 16.7 239 2-246 59-314 (328)
50 2z66_A Variable lymphocyte rec 100.0 3.3E-29 1.1E-33 254.7 18.6 275 290-570 10-292 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 7.7E-29 2.6E-33 257.3 19.1 271 21-302 36-316 (353)
52 3zyi_A Leucine-rich repeat-con 100.0 3.4E-28 1.2E-32 261.3 23.9 253 289-548 56-309 (452)
53 3zyj_A Leucine-rich repeat-con 100.0 4.4E-28 1.5E-32 259.4 23.9 253 289-548 45-298 (440)
54 2z66_A Variable lymphocyte rec 100.0 3.3E-28 1.1E-32 247.3 21.1 250 4-270 7-262 (306)
55 2z80_A TOLL-like receptor 2, v 100.0 5.7E-29 1.9E-33 258.3 13.8 257 288-546 53-318 (353)
56 1ozn_A Reticulon 4 receptor; N 100.0 1.6E-28 5.6E-33 246.7 16.4 251 290-569 14-265 (285)
57 3zyi_A Leucine-rich repeat-con 100.0 1.3E-27 4.4E-32 256.8 23.3 248 17-270 55-304 (452)
58 3oja_A Leucine-rich immune mol 100.0 3.2E-30 1.1E-34 278.2 2.9 218 337-568 35-253 (487)
59 1ozn_A Reticulon 4 receptor; N 100.0 4.9E-28 1.7E-32 243.3 18.2 235 8-248 5-240 (285)
60 3ogk_B Coronatine-insensitive 100.0 4E-30 1.4E-34 287.3 3.3 447 5-467 43-548 (592)
61 3ogk_B Coronatine-insensitive 100.0 3.9E-30 1.3E-34 287.3 2.8 425 57-515 66-548 (592)
62 3zyj_A Leucine-rich repeat-con 100.0 3E-27 1E-31 253.0 22.5 248 17-270 44-293 (440)
63 2o6q_A Variable lymphocyte rec 99.9 1E-26 3.5E-31 231.3 21.1 217 1-222 2-218 (270)
64 4fcg_A Uncharacterized protein 99.9 9.8E-27 3.4E-31 237.8 17.6 225 313-543 82-315 (328)
65 1wwl_A Monocyte differentiatio 99.9 4.3E-28 1.5E-32 246.7 4.9 252 34-301 37-310 (312)
66 1wwl_A Monocyte differentiatio 99.9 5.2E-28 1.8E-32 246.0 5.3 248 284-543 40-310 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-27 1.1E-31 240.9 10.7 259 18-321 12-271 (317)
68 2p1m_B Transport inhibitor res 99.9 1.2E-28 4E-33 275.6 -0.4 111 404-516 428-542 (594)
69 2p1m_B Transport inhibitor res 99.9 4.4E-29 1.5E-33 279.1 -4.1 225 314-541 291-543 (594)
70 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-27 5.6E-32 243.0 7.2 235 16-265 34-271 (317)
71 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-25 8.8E-30 244.3 23.5 269 16-360 40-308 (622)
72 2z62_A TOLL-like receptor 4, v 99.9 3E-25 1E-29 221.8 19.5 210 312-547 28-242 (276)
73 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-24 5.3E-29 238.2 25.7 265 41-405 41-305 (622)
74 3oja_A Leucine-rich immune mol 99.9 4.9E-26 1.7E-30 245.5 12.1 215 313-542 35-250 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 5.7E-25 2E-29 219.7 18.8 209 40-250 28-241 (276)
76 2o6q_A Variable lymphocyte rec 99.9 3.1E-24 1.1E-28 213.3 21.2 205 314-546 18-222 (270)
77 1p9a_G Platelet glycoprotein I 99.9 1.3E-23 4.6E-28 210.4 19.8 205 332-544 6-210 (290)
78 3m19_A Variable lymphocyte rec 99.9 1.3E-23 4.5E-28 206.4 18.0 190 2-197 3-192 (251)
79 1p9a_G Platelet glycoprotein I 99.9 2.2E-23 7.5E-28 208.8 19.8 206 355-567 5-210 (290)
80 3rfs_A Internalin B, repeat mo 99.9 2.2E-23 7.6E-28 207.3 17.3 220 22-255 25-245 (272)
81 2xwt_C Thyrotropin receptor; s 99.9 3.9E-23 1.3E-27 201.5 16.0 197 40-243 31-236 (239)
82 3rfs_A Internalin B, repeat mo 99.9 6.3E-23 2.2E-27 204.0 16.0 203 16-230 41-243 (272)
83 2xwt_C Thyrotropin receptor; s 99.9 5.4E-23 1.9E-27 200.5 15.0 197 16-219 31-236 (239)
84 3goz_A Leucine-rich repeat-con 99.9 3.1E-24 1.1E-28 223.1 6.2 266 20-308 2-305 (362)
85 3goz_A Leucine-rich repeat-con 99.9 9.7E-24 3.3E-28 219.4 5.8 264 44-332 2-304 (362)
86 2ast_B S-phase kinase-associat 99.9 3.2E-24 1.1E-28 221.2 2.0 208 5-219 38-257 (336)
87 4glp_A Monocyte differentiatio 99.9 1.2E-22 4E-27 206.4 10.5 229 286-542 63-307 (310)
88 4glp_A Monocyte differentiatio 99.9 3.8E-22 1.3E-26 202.6 12.9 231 256-518 64-307 (310)
89 3m19_A Variable lymphocyte rec 99.9 2.4E-21 8.3E-26 190.1 17.7 179 338-544 16-194 (251)
90 1h6u_A Internalin H; cell adhe 99.9 1.9E-21 6.6E-26 196.8 17.2 196 36-248 37-232 (308)
91 2ca6_A RAN GTPase-activating p 99.9 2E-23 6.8E-28 219.4 2.6 231 314-545 34-319 (386)
92 2ast_B S-phase kinase-associat 99.9 8.7E-23 3E-27 210.5 6.9 251 287-546 47-310 (336)
93 4ay9_X Follicle-stimulating ho 99.9 2.8E-21 9.6E-26 199.7 17.4 233 25-265 18-255 (350)
94 1h6u_A Internalin H; cell adhe 99.9 6.9E-21 2.4E-25 192.7 19.0 191 16-223 41-231 (308)
95 4ay9_X Follicle-stimulating ho 99.9 2.3E-21 7.8E-26 200.3 14.3 241 290-539 12-256 (350)
96 2ca6_A RAN GTPase-activating p 99.9 6.1E-23 2.1E-27 215.7 2.3 248 32-303 24-319 (386)
97 2o6s_A Variable lymphocyte rec 99.9 4E-21 1.4E-25 182.9 14.1 180 4-205 7-186 (208)
98 2o6s_A Variable lymphocyte rec 99.8 3.8E-20 1.3E-24 176.1 14.3 181 43-234 10-190 (208)
99 3cvr_A Invasion plasmid antige 99.8 4.3E-20 1.5E-24 200.3 14.6 195 5-230 49-251 (571)
100 2v9t_B SLIT homolog 2 protein 99.8 5.2E-20 1.8E-24 176.2 11.6 159 387-549 14-172 (220)
101 3e6j_A Variable lymphocyte rec 99.8 2.8E-19 9.5E-24 172.4 15.9 157 2-174 17-173 (229)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 8.3E-20 2.8E-24 174.8 11.8 158 388-549 15-173 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 8.7E-19 3E-23 167.7 16.9 152 20-174 15-167 (220)
104 2v9t_B SLIT homolog 2 protein 99.8 5.1E-19 1.7E-23 169.3 15.3 151 20-173 15-165 (220)
105 1h6t_A Internalin B; cell adhe 99.8 5.5E-19 1.9E-23 177.0 14.4 171 37-222 43-213 (291)
106 2xot_A Amphoterin-induced prot 99.8 4.6E-19 1.6E-23 183.8 12.7 180 339-546 21-206 (361)
107 2xot_A Amphoterin-induced prot 99.8 7.5E-19 2.6E-23 182.2 14.2 175 20-197 22-202 (361)
108 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.9E-23 172.9 16.1 168 16-197 46-213 (291)
109 3sb4_A Hypothetical leucine ri 99.8 9.5E-19 3.2E-23 179.1 11.7 103 311-415 225-328 (329)
110 3cvr_A Invasion plasmid antige 99.8 2.8E-18 9.4E-23 186.1 14.8 186 314-528 61-253 (571)
111 1m9s_A Internalin B; cell inva 99.8 3.3E-18 1.1E-22 187.7 15.0 172 36-222 39-210 (605)
112 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.6E-22 161.3 16.0 153 42-198 21-173 (229)
113 4ezg_A Putative uncharacterize 99.7 3.4E-18 1.2E-22 160.7 11.4 152 62-222 42-194 (197)
114 3sb4_A Hypothetical leucine ri 99.7 2.4E-18 8.4E-23 176.0 11.2 262 255-535 24-327 (329)
115 1m9s_A Internalin B; cell inva 99.7 5.9E-18 2E-22 185.8 14.8 193 39-248 20-212 (605)
116 4ezg_A Putative uncharacterize 99.7 9.2E-18 3.2E-22 157.8 12.2 155 35-197 39-194 (197)
117 4fs7_A Uncharacterized protein 99.7 3E-16 1E-20 164.7 23.6 330 33-413 64-393 (394)
118 1w8a_A SLIT protein; signaling 99.7 5.3E-18 1.8E-22 158.5 9.0 156 411-570 11-167 (192)
119 1xeu_A Internalin C; cellular 99.7 1.8E-17 6E-22 163.3 12.1 170 39-224 18-187 (263)
120 4fs7_A Uncharacterized protein 99.7 5E-16 1.7E-20 163.0 22.3 332 52-434 59-390 (394)
121 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.7E-22 164.1 9.1 165 18-197 21-185 (263)
122 4fdw_A Leucine rich hypothetic 99.7 1E-15 3.5E-20 159.6 22.9 265 39-348 112-382 (401)
123 4fdw_A Leucine rich hypothetic 99.7 7.1E-16 2.4E-20 160.8 20.1 195 338-542 159-358 (401)
124 1dce_A Protein (RAB geranylger 99.7 1.6E-19 5.6E-24 197.0 -8.0 190 37-250 346-550 (567)
125 1dce_A Protein (RAB geranylger 99.7 8.6E-19 2.9E-23 191.3 -4.3 191 333-547 346-551 (567)
126 2wfh_A SLIT homolog 2 protein 99.7 6.9E-17 2.4E-21 150.8 9.1 133 411-548 13-145 (193)
127 4b8c_D Glucose-repressible alc 99.7 9.4E-18 3.2E-22 189.1 3.1 200 5-219 164-369 (727)
128 1w8a_A SLIT protein; signaling 99.7 3.5E-16 1.2E-20 146.0 13.3 130 19-151 11-141 (192)
129 2ell_A Acidic leucine-rich nuc 99.7 1.9E-16 6.4E-21 144.7 10.3 132 40-173 24-160 (168)
130 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.5E-21 145.7 9.1 136 15-152 23-163 (168)
131 4b8c_D Glucose-repressible alc 99.7 1.1E-16 3.8E-21 180.4 9.8 190 342-543 207-405 (727)
132 2je0_A Acidic leucine-rich nuc 99.6 2.5E-16 8.7E-21 140.6 7.9 127 40-168 17-148 (149)
133 2je0_A Acidic leucine-rich nuc 99.6 2.7E-16 9.4E-21 140.4 7.9 127 16-144 17-148 (149)
134 2o6r_A Variable lymphocyte rec 99.6 2.3E-15 7.8E-20 138.7 13.5 112 40-151 28-139 (177)
135 2wfh_A SLIT homolog 2 protein 99.6 2.5E-15 8.4E-20 140.2 13.5 126 20-149 14-139 (193)
136 2o6r_A Variable lymphocyte rec 99.6 3E-15 1E-19 138.0 12.2 133 410-546 9-141 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.6 2.4E-15 8.1E-20 138.4 8.6 134 34-172 13-152 (176)
138 4gt6_A Cell surface protein; l 99.6 7.8E-13 2.7E-17 138.6 28.5 284 79-416 54-342 (394)
139 4gt6_A Cell surface protein; l 99.5 1.1E-12 3.6E-17 137.7 25.5 336 100-517 51-390 (394)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6E-19 132.5 8.5 133 60-196 15-152 (176)
141 3g39_A Variable lymphocyte rec 99.5 1E-13 3.4E-18 126.4 10.9 108 436-546 12-119 (170)
142 1ds9_A Outer arm dynein; leuci 99.5 1.8E-16 6E-21 149.1 -7.8 151 39-196 17-184 (198)
143 1ds9_A Outer arm dynein; leuci 99.5 3.3E-16 1.1E-20 147.2 -6.7 135 60-199 14-155 (198)
144 2r9u_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 124.4 10.9 108 436-546 15-122 (174)
145 3g39_A Variable lymphocyte rec 99.4 4.8E-13 1.6E-17 121.8 11.6 103 20-125 13-115 (170)
146 2r9u_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 120.7 11.8 104 19-125 15-118 (174)
147 4h09_A Hypothetical leucine ri 99.4 1.5E-10 5.2E-15 120.7 26.0 58 108-168 42-99 (379)
148 4h09_A Hypothetical leucine ri 99.3 3.3E-10 1.1E-14 118.1 27.5 83 83-170 41-123 (379)
149 3un9_A NLR family member X1; l 99.3 6.4E-14 2.2E-18 144.6 -3.9 184 39-222 71-283 (372)
150 3un9_A NLR family member X1; l 99.3 2.4E-13 8.1E-18 140.3 -1.0 168 63-230 71-260 (372)
151 2ifg_A High affinity nerve gro 99.2 2.3E-11 7.7E-16 125.3 11.9 101 22-125 14-116 (347)
152 2ifg_A High affinity nerve gro 99.2 6.4E-12 2.2E-16 129.4 7.5 108 437-547 12-121 (347)
153 4aoj_A High affinity nerve gro 99.2 1.7E-11 5.8E-16 123.7 6.7 70 646-715 41-113 (329)
154 4asz_A BDNF/NT-3 growth factor 99.2 2E-11 6.9E-16 121.3 6.5 70 646-715 13-85 (299)
155 4gt4_A Tyrosine-protein kinase 99.1 7.4E-11 2.5E-15 117.8 7.3 69 647-715 27-99 (308)
156 3omv_A RAF proto-oncogene seri 99.0 2.3E-10 7.9E-15 113.7 6.4 71 640-715 30-102 (307)
157 2ra8_A Uncharacterized protein 98.9 6.1E-10 2.1E-14 113.6 6.3 85 158-244 250-341 (362)
158 4fih_A Serine/threonine-protei 98.9 1E-09 3.6E-14 110.4 6.9 67 646-714 74-140 (346)
159 4ase_A Vascular endothelial gr 98.9 1.1E-09 3.7E-14 111.4 6.5 80 636-715 54-138 (353)
160 2ra8_A Uncharacterized protein 98.9 1.3E-09 4.4E-14 111.3 7.0 85 182-267 250-341 (362)
161 4g31_A Eukaryotic translation 98.9 1.4E-09 4.7E-14 108.3 6.7 67 646-714 5-72 (299)
162 3fpq_A Serine/threonine-protei 98.9 2.3E-09 7.9E-14 105.6 7.5 64 649-714 29-94 (290)
163 4fie_A Serine/threonine-protei 98.9 2.3E-09 7.7E-14 110.9 7.5 68 645-714 150-217 (423)
164 4b9d_A Serine/threonine-protei 98.8 3.4E-09 1.2E-13 106.8 7.6 68 645-714 23-92 (350)
165 3hmm_A TGF-beta receptor type- 98.8 1.7E-09 5.7E-14 108.2 4.8 61 647-714 4-66 (303)
166 3hyh_A Carbon catabolite-derep 98.8 4.9E-09 1.7E-13 102.3 7.3 68 645-714 12-82 (275)
167 4aw0_A HPDK1, 3-phosphoinositi 98.8 5.1E-09 1.7E-13 103.7 6.1 68 645-714 31-101 (311)
168 3rw6_A Nuclear RNA export fact 98.7 6E-10 2.1E-14 107.5 -3.1 153 3-166 77-257 (267)
169 4b99_A Mitogen-activated prote 98.7 1.9E-08 6.4E-13 104.2 7.5 67 646-714 54-122 (398)
170 4g3f_A NF-kappa-beta-inducing 98.6 1.6E-08 5.4E-13 101.5 5.1 63 645-714 57-119 (336)
171 2c30_A Serine/threonine-protei 98.6 4.4E-08 1.5E-12 99.2 8.1 80 633-714 22-111 (321)
172 1io0_A Tropomodulin; LRR prote 98.6 3.8E-09 1.3E-13 97.2 0.1 118 31-148 27-163 (185)
173 2qkw_B Protein kinase; three-h 98.6 2.4E-08 8.3E-13 101.2 5.8 77 635-714 28-104 (321)
174 3ubd_A Ribosomal protein S6 ki 98.6 7E-09 2.4E-13 102.7 1.6 69 646-714 24-95 (304)
175 2nru_A Interleukin-1 receptor- 98.6 8E-08 2.7E-12 96.7 8.8 79 632-714 11-99 (307)
176 3uim_A Brassinosteroid insensi 98.5 5.9E-08 2E-12 98.6 5.3 81 631-714 15-96 (326)
177 3uto_A Twitchin; kinase, muscl 98.5 7.3E-08 2.5E-12 105.1 6.3 68 645-714 156-223 (573)
178 3ugc_A Tyrosine-protein kinase 98.5 1.3E-07 4.3E-12 94.6 6.9 70 645-714 9-80 (295)
179 3s95_A LIMK-1, LIM domain kina 98.5 1.6E-07 5.6E-12 94.5 6.9 68 645-714 9-76 (310)
180 3qd2_B Eukaryotic translation 98.5 1.9E-07 6.5E-12 95.1 7.4 68 645-714 5-73 (332)
181 1io0_A Tropomodulin; LRR prote 98.4 5.5E-08 1.9E-12 89.3 2.2 110 16-125 36-164 (185)
182 1opk_A P150, C-ABL, proto-onco 98.4 1.3E-07 4.5E-12 101.8 4.9 73 640-715 214-286 (495)
183 4aw2_A Serine/threonine-protei 98.4 3.6E-08 1.2E-12 103.8 0.4 77 636-714 64-143 (437)
184 3vhe_A Vascular endothelial gr 98.4 2.4E-07 8.2E-12 95.6 6.5 80 635-714 11-95 (359)
185 1qcf_A Haematopoetic cell kina 98.4 2.2E-07 7.5E-12 99.0 6.2 72 639-714 181-252 (454)
186 3fxz_A Serine/threonine-protei 98.4 3.9E-07 1.3E-11 91.1 7.6 68 645-714 19-86 (297)
187 4f9c_A Cell division cycle 7-r 98.4 3.3E-07 1.1E-11 93.7 7.1 74 639-714 14-89 (361)
188 1k9a_A Carboxyl-terminal SRC k 98.4 2.2E-07 7.6E-12 98.8 5.5 70 639-714 186-255 (450)
189 1fmk_A C-SRC, P60-SRC, tyrosin 98.4 2.8E-07 9.6E-12 98.0 5.9 72 639-714 177-248 (452)
190 3o0g_A Cell division protein k 98.4 6.3E-07 2.2E-11 89.3 8.1 67 646-714 2-70 (292)
191 3cbl_A C-FES, proto-oncogene t 98.3 1.8E-07 6.3E-12 97.0 3.9 73 641-715 109-182 (377)
192 2x4f_A Myosin light chain kina 98.3 4.4E-07 1.5E-11 93.8 6.6 64 649-714 92-155 (373)
193 3f3z_A Calcium/calmodulin-depe 98.3 4.8E-07 1.6E-11 89.4 6.6 68 645-714 8-75 (277)
194 3p86_A Serine/threonine-protei 98.3 3.5E-07 1.2E-11 92.0 5.6 72 639-714 30-103 (309)
195 3kfa_A Tyrosine-protein kinase 98.3 3E-07 1E-11 91.5 5.1 74 638-714 5-78 (288)
196 3l9p_A Anaplastic lymphoma kin 98.3 4.7E-07 1.6E-11 93.5 6.7 70 645-714 70-143 (367)
197 4f0f_A Serine/threonine-protei 98.3 7.4E-07 2.5E-11 88.6 8.0 68 645-714 18-92 (287)
198 3fe3_A MAP/microtubule affinit 98.3 3.7E-07 1.3E-11 92.5 5.8 70 643-714 12-83 (328)
199 2pmi_A Negative RE, cyclin-dep 98.3 6.3E-07 2.2E-11 90.5 7.5 68 645-714 4-72 (317)
200 2clq_A Mitogen-activated prote 98.3 1.1E-06 3.6E-11 87.8 9.0 66 647-714 23-88 (295)
201 2zv2_A Calcium/calmodulin-depe 98.3 6E-07 2.1E-11 89.8 7.1 68 645-714 12-105 (298)
202 3zgw_A Maternal embryonic leuc 98.3 4.5E-07 1.5E-11 92.5 6.2 69 644-714 8-77 (347)
203 2qol_A Ephrin receptor; recept 98.3 3.5E-07 1.2E-11 94.6 5.5 70 645-714 44-115 (373)
204 3v8s_A RHO-associated protein 98.3 3.2E-07 1.1E-11 95.7 5.2 76 637-714 60-138 (410)
205 1luf_A Muscle-specific tyrosin 98.3 6.3E-07 2.1E-11 91.7 7.2 76 639-714 40-119 (343)
206 2i6l_A Mitogen-activated prote 98.3 5.9E-07 2E-11 90.8 6.9 68 645-714 10-77 (320)
207 2h8h_A Proto-oncogene tyrosine 98.3 3.9E-07 1.3E-11 99.1 5.8 73 639-715 260-332 (535)
208 3hko_A Calcium/calmodulin-depe 98.3 5.5E-07 1.9E-11 92.2 6.5 73 640-714 20-97 (345)
209 4hcu_A Tyrosine-protein kinase 98.3 6.2E-07 2.1E-11 88.2 6.6 66 645-714 9-74 (269)
210 4fvq_A Tyrosine-protein kinase 98.3 5.1E-07 1.8E-11 89.8 6.0 70 645-714 7-81 (289)
211 2j7t_A Serine/threonine-protei 98.3 8E-07 2.7E-11 89.1 7.5 68 645-714 18-85 (302)
212 3gen_A Tyrosine-protein kinase 98.3 5.6E-07 1.9E-11 89.3 6.2 72 639-714 17-88 (283)
213 3kul_A Ephrin type-A receptor 98.3 5.5E-07 1.9E-11 91.2 6.2 70 645-714 48-119 (325)
214 3soc_A Activin receptor type-2 98.3 3.8E-07 1.3E-11 92.4 4.7 66 644-714 22-87 (322)
215 3uqc_A Probable conserved tran 98.3 1.1E-06 3.7E-11 87.2 7.9 67 646-714 31-100 (286)
216 1xbb_A Tyrosine-protein kinase 98.3 6.7E-07 2.3E-11 89.1 6.3 71 644-714 14-87 (291)
217 2ozo_A Tyrosine-protein kinase 98.3 9.4E-07 3.2E-11 97.6 8.0 62 653-714 343-405 (613)
218 2eva_A TAK1 kinase - TAB1 chim 98.3 6.6E-07 2.3E-11 89.9 6.2 63 646-714 8-70 (307)
219 2w1i_A JAK2; chromosomal rearr 98.3 1E-06 3.5E-11 89.4 7.7 70 645-714 40-111 (326)
220 2psq_A Fibroblast growth facto 98.3 9.8E-07 3.4E-11 91.1 7.6 70 645-714 80-156 (370)
221 2yab_A Death-associated protei 98.3 9.4E-07 3.2E-11 90.7 7.3 68 645-714 11-84 (361)
222 2buj_A Serine/threonine-protei 98.3 6.1E-07 2.1E-11 90.6 5.7 69 644-714 27-95 (317)
223 4fl3_A Tyrosine-protein kinase 98.3 8.9E-07 3.1E-11 98.0 7.5 63 652-714 375-439 (635)
224 4euu_A Serine/threonine-protei 98.3 9.2E-07 3.1E-11 89.4 6.9 67 646-714 9-76 (319)
225 3uc3_A Serine/threonine-protei 98.3 1.3E-06 4.4E-11 89.9 7.9 67 645-714 19-85 (361)
226 3niz_A Rhodanese family protei 98.3 1E-06 3.5E-11 88.7 6.9 68 644-714 19-88 (311)
227 2y0a_A Death-associated protei 98.3 1.2E-06 4E-11 88.9 7.4 67 646-714 11-83 (326)
228 3rp9_A Mitogen-activated prote 98.3 8.2E-07 2.8E-11 94.8 6.5 68 645-714 52-121 (458)
229 1kob_A Twitchin; kinase, intra 98.3 8.9E-07 3E-11 91.8 6.5 68 645-714 50-117 (387)
230 3eb0_A Putative uncharacterize 98.2 7.7E-07 2.7E-11 92.5 6.1 68 641-714 2-69 (383)
231 1u59_A Tyrosine-protein kinase 98.2 6E-07 2E-11 89.2 5.0 68 647-714 10-79 (287)
232 3tki_A Serine/threonine-protei 98.2 8.1E-07 2.8E-11 89.9 6.0 68 645-714 6-74 (323)
233 3sxs_A Cytoplasmic tyrosine-pr 98.2 7.4E-07 2.5E-11 87.6 5.5 67 644-714 6-72 (268)
234 3pg1_A Mitogen-activated prote 98.2 9E-07 3.1E-11 91.3 6.4 77 635-714 11-98 (362)
235 3lxl_A Tyrosine-protein kinase 98.2 9.2E-07 3.1E-11 89.8 6.2 69 646-714 23-93 (327)
236 1u5q_A Serine/threonine protei 98.2 1.1E-06 3.9E-11 89.8 6.9 67 646-714 54-123 (348)
237 1mp8_A Focal adhesion kinase 1 98.2 8.6E-07 3E-11 87.8 5.9 73 642-714 11-85 (281)
238 1qpc_A LCK kinase; alpha beta 98.2 7.9E-07 2.7E-11 87.9 5.6 71 640-714 7-77 (279)
239 4fr4_A YANK1, serine/threonine 98.2 1.2E-06 4E-11 90.6 7.0 68 645-714 14-84 (384)
240 2eue_A Carbon catabolite derep 98.2 1.5E-06 5.3E-11 85.6 7.6 68 645-714 12-82 (275)
241 3e4g_A ATP synthase subunit S, 98.2 3.2E-07 1.1E-11 81.7 2.3 82 66-147 63-150 (176)
242 3h4j_B AMPK kdaid, SNF1-like p 98.2 8.9E-07 3.1E-11 89.9 6.0 68 645-714 8-78 (336)
243 1o6l_A RAC-beta serine/threoni 98.2 1.2E-06 4E-11 89.1 6.8 68 645-714 4-74 (337)
244 3is5_A Calcium-dependent prote 98.2 1.5E-06 5.3E-11 86.1 7.5 67 646-714 22-89 (285)
245 1tki_A Titin; serine kinase, m 98.2 1.1E-06 3.6E-11 88.9 6.3 67 645-714 4-70 (321)
246 3cc6_A Protein tyrosine kinase 98.2 9.6E-07 3.3E-11 87.4 5.9 71 644-714 10-82 (281)
247 2vd5_A DMPK protein; serine/th 98.2 6.2E-07 2.1E-11 93.6 4.7 77 636-714 51-130 (412)
248 3kmu_A ILK, integrin-linked ki 98.2 6.2E-07 2.1E-11 88.2 4.5 66 645-714 9-76 (271)
249 2w4o_A Calcium/calmodulin-depe 98.2 9E-07 3.1E-11 90.6 5.7 67 644-714 51-117 (349)
250 1p4o_A Insulin-like growth fac 98.2 7.8E-07 2.7E-11 90.1 5.2 80 635-714 14-97 (322)
251 3qup_A Tyrosine-protein kinase 98.2 4.7E-07 1.6E-11 91.8 3.5 75 640-714 17-94 (323)
252 3c0i_A Peripheral plasma membr 98.2 7.4E-07 2.5E-11 91.4 5.0 67 646-714 24-95 (351)
253 3rw6_A Nuclear RNA export fact 98.2 1.2E-06 4E-11 84.5 5.9 105 36-142 137-257 (267)
254 4eut_A Serine/threonine-protei 98.2 1.3E-06 4.5E-11 91.1 6.9 67 646-714 9-76 (396)
255 2jam_A Calcium/calmodulin-depe 98.2 1.3E-06 4.3E-11 87.7 6.5 68 645-714 8-75 (304)
256 4agu_A Cyclin-dependent kinase 98.2 1.7E-06 6E-11 87.0 7.5 67 646-714 3-71 (311)
257 2i1m_A Macrophage colony-stimu 98.2 1.4E-06 4.6E-11 88.8 6.6 76 639-714 39-119 (333)
258 3rgf_A Cyclin-dependent kinase 98.2 1.4E-06 4.7E-11 91.4 6.8 62 651-714 26-87 (405)
259 3fdn_A Serine/threonine-protei 98.2 1.2E-06 4.2E-11 86.6 6.0 69 644-714 7-78 (279)
260 2bdw_A Hypothetical protein K1 98.2 1.3E-06 4.4E-11 89.9 6.4 68 645-714 28-97 (362)
261 2wtk_C Serine/threonine-protei 98.2 1.8E-06 6.2E-11 86.6 7.2 68 645-714 4-75 (305)
262 3dtc_A Mitogen-activated prote 98.2 1.2E-06 4.2E-11 86.1 5.8 66 645-714 6-75 (271)
263 3mi9_A Cell division protein k 98.2 2.1E-06 7.1E-11 88.1 7.7 68 645-714 16-85 (351)
264 3poz_A Epidermal growth factor 98.2 9.3E-07 3.2E-11 89.7 5.0 70 645-714 14-86 (327)
265 3gbz_A Kinase, CMGC CDK; ssgci 98.2 1.2E-06 4.1E-11 89.0 5.8 71 642-714 30-102 (329)
266 1t46_A HOMO sapiens V-KIT hard 98.2 1.4E-06 4.8E-11 87.7 6.3 74 641-714 18-96 (313)
267 3ttj_A Mitogen-activated prote 98.2 1.2E-06 4E-11 93.4 5.9 68 645-714 61-130 (464)
268 3i6u_A CDS1, serine/threonine- 98.2 1.2E-06 4.1E-11 92.1 5.8 69 644-714 133-209 (419)
269 3e4g_A ATP synthase subunit S, 98.2 4.9E-07 1.7E-11 80.5 2.4 84 40-123 61-150 (176)
270 2xir_A Vascular endothelial gr 98.2 1.5E-06 5.3E-11 87.6 6.4 79 636-714 17-100 (316)
271 1ob3_A PFPK5, cell division co 98.2 1.4E-06 4.9E-11 86.5 6.1 66 646-714 2-69 (288)
272 4e5w_A Tyrosine-protein kinase 98.2 2.2E-06 7.6E-11 85.8 7.5 69 646-714 21-92 (302)
273 3bhy_A Death-associated protei 98.2 2.1E-06 7.2E-11 85.1 7.2 67 646-714 5-77 (283)
274 4eqm_A Protein kinase; transfe 98.2 2.2E-06 7.5E-11 85.4 7.3 68 645-714 10-80 (294)
275 2ivs_A Proto-oncogene tyrosine 98.2 1.5E-06 5.2E-11 87.5 6.2 73 642-714 19-95 (314)
276 3ll6_A Cyclin G-associated kin 98.2 7.9E-07 2.7E-11 90.6 4.1 72 641-714 23-95 (337)
277 2w5a_A Serine/threonine-protei 98.2 2.4E-06 8.1E-11 84.5 7.4 68 645-714 5-74 (279)
278 2ac3_A MAP kinase-interacting 98.2 3.5E-06 1.2E-10 85.0 8.8 67 646-714 12-80 (316)
279 1fot_A TPK1 delta, CAMP-depend 98.2 1.9E-06 6.5E-11 86.8 6.7 68 645-714 5-75 (318)
280 3brb_A Proto-oncogene tyrosine 98.2 1E-06 3.5E-11 88.8 4.7 76 639-714 27-105 (313)
281 1j1b_A Glycogen synthase kinas 98.2 1.4E-06 4.7E-11 91.7 5.7 63 646-714 54-116 (420)
282 4aaa_A Cyclin-dependent kinase 98.2 2.6E-06 8.8E-11 86.6 7.6 68 645-714 24-93 (331)
283 3ork_A Serine/threonine protei 98.2 1.5E-06 5.2E-11 87.4 5.8 68 645-714 11-81 (311)
284 3kk8_A Calcium/calmodulin depe 98.2 2.3E-06 7.7E-11 84.9 7.0 68 645-714 5-74 (284)
285 2yfx_A Tyrosine-protein kinase 98.2 1.7E-06 5.8E-11 87.8 6.1 72 643-714 27-102 (327)
286 2b9h_A MAP kinase FUS3, mitoge 98.2 2.1E-06 7.3E-11 88.1 7.0 68 645-714 10-78 (353)
287 1ua2_A CAK, cell division prot 98.2 1.5E-06 5E-11 89.0 5.7 70 643-714 7-81 (346)
288 3t9t_A Tyrosine-protein kinase 98.2 1.7E-06 5.8E-11 84.9 5.9 66 645-714 7-72 (267)
289 2wqm_A Serine/threonine-protei 98.2 2.4E-06 8.2E-11 85.9 7.1 68 645-714 31-101 (310)
290 2a2a_A Death-associated protei 98.2 2.5E-06 8.4E-11 86.3 7.2 68 645-714 11-84 (321)
291 2rku_A Serine/threonine-protei 98.2 1.8E-06 6.1E-11 86.1 6.1 68 645-714 14-84 (294)
292 3c1x_A Hepatocyte growth facto 98.1 1.2E-06 4.1E-11 90.5 4.9 68 647-714 90-159 (373)
293 3lij_A Calcium/calmodulin depe 98.1 2E-06 6.9E-11 92.6 6.9 68 645-714 36-105 (494)
294 3q5i_A Protein kinase; CDPK, m 98.1 2.6E-06 9E-11 92.0 7.7 68 645-714 35-115 (504)
295 3v5w_A G-protein coupled recep 98.1 1.9E-06 6.6E-11 93.6 6.6 68 645-714 188-261 (689)
296 2x7f_A TRAF2 and NCK-interacti 98.1 1.2E-06 4.1E-11 88.9 4.7 78 634-714 12-90 (326)
297 1rjb_A FL cytokine receptor; k 98.1 1.8E-06 6E-11 88.4 5.9 75 640-714 39-118 (344)
298 1mqb_A Ephrin type-A receptor 98.1 2.9E-06 9.8E-11 86.3 7.5 69 646-714 44-115 (333)
299 3n9x_A Phosphotransferase; mal 98.1 1.7E-06 5.8E-11 91.4 5.8 68 645-714 25-94 (432)
300 3qyz_A Mitogen-activated prote 98.1 2.1E-06 7.3E-11 88.5 6.3 70 643-714 24-94 (364)
301 3lxp_A Non-receptor tyrosine-p 98.1 2.8E-06 9.6E-11 85.8 7.0 68 647-714 32-102 (318)
302 2y94_A 5'-AMP-activated protei 98.1 2.6E-06 8.9E-11 90.6 7.0 68 645-714 15-85 (476)
303 2r3i_A Cell division protein k 98.1 3.1E-06 1.1E-10 84.6 7.2 67 646-714 3-71 (299)
304 3mwu_A Calmodulin-domain prote 98.1 2.4E-06 8.2E-11 91.9 6.8 68 645-714 21-90 (486)
305 2yex_A Serine/threonine-protei 98.1 3.3E-06 1.1E-10 83.3 7.3 68 645-714 6-74 (276)
306 3gni_B Strad alpha; kinase fol 98.1 2E-06 6.7E-11 89.7 5.9 68 645-714 24-95 (389)
307 2fst_X Mitogen-activated prote 98.1 1.8E-06 6.1E-11 89.0 5.5 68 645-714 28-97 (367)
308 1zy4_A Serine/threonine-protei 98.1 2E-06 6.8E-11 86.1 5.7 67 645-714 5-71 (303)
309 3a7i_A MST3 kinase, serine/thr 98.1 4.4E-06 1.5E-10 83.6 8.3 68 645-714 21-89 (303)
310 1cm8_A Phosphorylated MAP kina 98.1 1.6E-06 5.6E-11 89.4 5.1 68 645-714 24-93 (367)
311 2owb_A Serine/threonine-protei 98.1 2.3E-06 7.7E-11 87.2 6.1 68 645-714 40-110 (335)
312 1byg_A CSK, protein (C-termina 98.1 1.7E-06 5.7E-11 85.6 5.0 65 644-714 19-83 (278)
313 3cok_A Serine/threonine-protei 98.1 2.9E-06 9.9E-11 83.8 6.7 68 645-714 10-80 (278)
314 3nyv_A Calmodulin-domain prote 98.1 2.5E-06 8.7E-11 91.7 6.8 68 645-714 25-95 (484)
315 2h34_A Serine/threonine-protei 98.1 3.3E-06 1.1E-10 84.8 7.3 68 645-714 33-103 (309)
316 3soa_A Calcium/calmodulin-depe 98.1 1.9E-06 6.5E-11 91.0 5.6 68 645-714 10-79 (444)
317 1t4h_A Serine/threonine-protei 98.1 3.5E-06 1.2E-10 83.7 7.3 66 647-714 27-94 (290)
318 3p1a_A MYT1 kinase, membrane-a 98.1 1.2E-06 4.1E-11 88.2 3.8 67 646-714 57-126 (311)
319 3a8x_A Protein kinase C IOTA t 98.1 2.7E-06 9.1E-11 86.8 6.4 68 645-714 8-79 (345)
320 3eqc_A Dual specificity mitoge 98.1 2.2E-06 7.6E-11 88.2 5.9 68 645-714 32-100 (360)
321 3dls_A PAS domain-containing s 98.1 1.4E-06 4.7E-11 88.7 4.2 68 645-714 23-98 (335)
322 3e3p_A Protein kinase, putativ 98.1 2.9E-06 9.9E-11 87.4 6.7 73 639-714 16-88 (360)
323 3lb7_A RAF proto-oncogene seri 98.1 2.3E-06 7.8E-11 85.9 5.7 68 642-714 32-101 (307)
324 2vgo_A Serine/threonine-protei 98.1 3.1E-06 1E-10 83.9 6.6 68 645-714 13-83 (284)
325 2xrw_A Mitogen-activated prote 98.1 3E-06 1E-10 87.6 6.7 68 645-714 24-93 (371)
326 3lzb_A Epidermal growth factor 98.1 3.4E-06 1.2E-10 85.5 6.9 70 645-714 14-86 (327)
327 1rdq_E PKA C-alpha, CAMP-depen 98.1 3.4E-06 1.2E-10 86.2 6.8 68 645-714 40-110 (350)
328 3tt0_A Basic fibroblast growth 98.1 2.3E-06 7.8E-11 88.9 5.6 73 642-714 65-144 (382)
329 2pvf_A Fibroblast growth facto 98.1 2.2E-06 7.6E-11 87.2 5.4 73 642-714 31-110 (334)
330 3com_A Serine/threonine-protei 98.1 5.3E-06 1.8E-10 83.6 8.2 68 643-714 26-93 (314)
331 3og7_A AKAP9-BRAF fusion prote 98.1 2.2E-06 7.4E-11 85.2 5.2 69 641-714 19-89 (289)
332 1u46_A ACK-1, activated CDC42 98.1 2.6E-06 8.9E-11 84.7 5.8 70 645-714 17-90 (291)
333 2h6d_A 5'-AMP-activated protei 98.1 3.8E-06 1.3E-10 82.8 6.9 68 645-714 10-80 (276)
334 3mtl_A Cell division protein k 98.1 1E-06 3.6E-11 89.2 2.9 67 646-714 2-69 (324)
335 3q4u_A Activin receptor type-1 98.1 3.7E-06 1.3E-10 84.1 6.8 63 645-714 7-71 (301)
336 3pls_A Macrophage-stimulating 98.1 3E-06 1E-10 84.6 6.1 67 648-714 23-91 (298)
337 3f66_A Hepatocyte growth facto 98.1 2.5E-06 8.4E-11 85.3 5.4 70 645-714 24-95 (298)
338 4dc2_A Protein kinase C IOTA t 98.1 2.6E-06 8.9E-11 88.3 5.7 69 644-714 50-122 (396)
339 1xjd_A Protein kinase C, theta 98.1 3E-06 1E-10 86.4 6.0 71 642-714 13-87 (345)
340 2ycf_A Serine/threonine-protei 98.1 2.8E-06 9.4E-11 86.0 5.7 68 645-714 9-84 (322)
341 4exu_A Mitogen-activated prote 98.1 3.4E-06 1.2E-10 87.2 6.5 68 645-714 41-110 (371)
342 3g33_A Cell division protein k 98.1 3.6E-06 1.2E-10 84.5 6.5 69 644-714 7-83 (308)
343 2wei_A Calmodulin-domain prote 98.1 4.2E-06 1.4E-10 83.0 6.9 68 645-714 21-90 (287)
344 3kex_A Receptor tyrosine-prote 98.1 2.2E-06 7.5E-11 86.9 4.8 69 646-714 13-84 (325)
345 3a62_A Ribosomal protein S6 ki 98.1 2.9E-06 1E-10 85.9 5.7 70 645-714 16-90 (327)
346 1fvr_A Tyrosine-protein kinase 98.1 3.4E-06 1.1E-10 85.6 6.1 69 646-714 25-95 (327)
347 3llt_A Serine/threonine kinase 98.1 1.9E-06 6.6E-11 88.7 4.3 80 632-714 21-105 (360)
348 2a19_B Interferon-induced, dou 98.1 3.7E-06 1.3E-10 83.2 6.2 64 645-714 10-73 (284)
349 3coi_A Mitogen-activated prote 98.1 3.9E-06 1.3E-10 86.1 6.4 68 645-714 23-92 (353)
350 1x8b_A WEE1HU, WEE1-like prote 98.1 4E-06 1.4E-10 83.2 6.4 68 645-714 10-80 (289)
351 3gxj_A TGF-beta receptor type- 98.0 3.8E-06 1.3E-10 84.0 6.2 62 646-714 3-66 (303)
352 3txo_A PKC-L, NPKC-ETA, protei 98.0 3.4E-06 1.2E-10 86.3 5.5 69 644-714 21-93 (353)
353 2acx_A G protein-coupled recep 98.0 3.8E-06 1.3E-10 90.8 6.1 69 644-714 182-253 (576)
354 3nsz_A CK II alpha, casein kin 98.0 5E-06 1.7E-10 84.4 6.7 65 645-714 35-100 (330)
355 3kn6_A Ribosomal protein S6 ki 98.0 6.6E-06 2.3E-10 83.2 7.4 59 651-714 16-75 (325)
356 1phk_A Phosphorylase kinase; g 98.0 4.5E-06 1.5E-10 83.3 6.0 68 645-714 16-93 (298)
357 2vwi_A Serine/threonine-protei 98.0 1.7E-06 5.9E-11 86.6 2.9 72 641-714 10-82 (303)
358 3oz6_A Mitogen-activated prote 98.0 5.7E-06 1.9E-10 86.1 6.8 69 644-714 7-78 (388)
359 2izr_A Casein kinase I isoform 98.0 5.3E-06 1.8E-10 84.2 6.0 66 645-714 8-74 (330)
360 3c4z_A Rhodopsin kinase; Ser/T 98.0 6.3E-06 2.1E-10 88.8 6.8 68 645-714 184-254 (543)
361 2j0j_A Focal adhesion kinase 1 98.0 5.5E-06 1.9E-10 92.1 6.5 73 642-714 386-460 (656)
362 2pml_X PFPK7, Ser/Thr protein 98.0 3.3E-06 1.1E-10 86.4 4.5 66 645-714 30-112 (348)
363 3dbq_A Dual specificity protei 98.0 6.9E-06 2.4E-10 83.8 6.8 67 645-714 8-78 (343)
364 3aln_A Dual specificity mitoge 98.0 1E-05 3.4E-10 82.0 7.7 69 644-714 20-90 (327)
365 4ejn_A RAC-alpha serine/threon 98.0 2.6E-06 8.7E-11 90.5 3.2 69 644-714 146-217 (446)
366 3an0_A Dual specificity mitoge 98.0 9.3E-06 3.2E-10 82.8 7.3 71 642-714 47-119 (340)
367 2y7j_A Phosphorylase B kinase 98.0 1E-05 3.5E-10 83.3 7.6 72 641-714 89-169 (365)
368 2vuw_A Serine/threonine-protei 98.0 3.8E-06 1.3E-10 85.5 4.0 66 645-714 19-101 (336)
369 3byv_A Rhoptry kinase; malaria 97.9 1.1E-06 3.7E-11 91.2 -0.1 66 645-712 72-143 (377)
370 2qr7_A Ribosomal protein S6 ki 97.9 5.6E-06 1.9E-10 84.3 5.0 64 645-714 21-85 (342)
371 1blx_A Cyclin-dependent kinase 97.9 4.9E-06 1.7E-10 84.3 4.2 71 643-714 8-83 (326)
372 3fme_A Dual specificity mitoge 97.9 8.5E-06 2.9E-10 80.9 5.8 68 645-714 6-75 (290)
373 2zmd_A Dual specificity protei 97.9 1E-05 3.5E-10 84.1 6.3 66 646-714 56-125 (390)
374 2r5t_A Serine/threonine-protei 97.9 6.6E-06 2.3E-10 84.7 4.6 68 645-714 37-108 (373)
375 2iwi_A Serine/threonine-protei 97.9 4E-06 1.4E-10 84.3 2.9 72 641-714 26-107 (312)
376 2i0e_A Protein kinase C-beta I 97.9 8.2E-06 2.8E-10 83.3 5.1 69 644-714 18-90 (353)
377 3op5_A Serine/threonine-protei 97.9 1.4E-05 4.9E-10 82.2 6.3 71 644-714 33-117 (364)
378 3cek_A Dual specificity protei 97.8 7.7E-06 2.6E-10 82.3 3.8 78 634-714 16-97 (313)
379 3qa8_A MGC80376 protein; kinas 97.8 4.4E-06 1.5E-10 91.5 2.0 68 645-714 13-81 (676)
380 4e7w_A Glycogen synthase kinas 97.8 1.5E-05 5.1E-10 83.0 5.9 63 645-714 39-101 (394)
381 2dyl_A Dual specificity mitoge 97.8 2.6E-05 9E-10 78.5 7.5 70 643-714 22-93 (318)
382 2y4i_B KSR2, HKSR2, kinase sup 97.8 3.6E-06 1.2E-10 85.0 1.0 73 637-714 24-98 (319)
383 1b6c_B TGF-B superfamily recep 97.8 2.1E-05 7.3E-10 80.1 6.8 65 643-714 39-105 (342)
384 2pzi_A Probable serine/threoni 97.8 1.2E-05 4.1E-10 90.3 4.9 69 645-714 79-148 (681)
385 2v62_A Serine/threonine-protei 97.8 2E-05 7E-10 80.4 5.9 70 645-714 36-117 (345)
386 3lm5_A Serine/threonine-protei 97.8 2E-05 6.9E-10 79.8 5.7 71 642-714 24-98 (327)
387 3mdy_A Bone morphogenetic prot 97.8 2.7E-05 9.1E-10 79.2 6.4 66 642-714 33-100 (337)
388 3e7e_A HBUB1, BUB1A, mitotic c 97.7 1.3E-05 4.4E-10 82.7 3.3 71 641-714 60-136 (365)
389 1vzo_A Ribosomal protein S6 ki 97.7 1.1E-05 3.8E-10 82.6 2.8 70 645-714 53-128 (355)
390 1wak_A Serine/threonine-protei 97.7 1.8E-05 6.3E-10 82.5 4.2 67 645-714 36-110 (397)
391 1csn_A Casein kinase-1; phosph 97.7 3.9E-05 1.3E-09 76.4 6.4 66 645-714 9-75 (298)
392 3a99_A Proto-oncogene serine/t 97.7 1.6E-05 5.6E-10 80.2 3.5 71 642-714 39-117 (320)
393 3m2w_A MAP kinase-activated pr 97.7 5E-05 1.7E-09 75.7 6.9 62 646-714 17-80 (299)
394 3g2f_A Bone morphogenetic prot 97.7 4.7E-05 1.6E-09 77.3 6.9 64 644-714 11-76 (336)
395 3kvw_A DYRK2, dual specificity 97.7 3.5E-05 1.2E-09 81.1 5.8 67 645-714 96-168 (429)
396 1nxk_A MAP kinase-activated pr 97.6 6.1E-05 2.1E-09 78.4 6.9 62 646-714 61-124 (400)
397 3p23_A Serine/threonine-protei 97.6 3.3E-05 1.1E-09 81.3 4.4 66 642-714 20-87 (432)
398 3pfq_A PKC-B, PKC-beta, protei 97.6 7.1E-05 2.4E-09 83.4 7.0 70 643-714 338-411 (674)
399 3uzp_A CKI-delta, CKID, casein 97.5 6.3E-05 2.2E-09 74.8 5.5 66 645-714 8-73 (296)
400 2rio_A Serine/threonine-protei 97.5 8.8E-05 3E-09 78.2 6.6 61 648-714 17-78 (434)
401 1q8y_A SR protein kinase; tran 97.5 3.4E-05 1.2E-09 79.7 3.3 67 645-714 18-95 (373)
402 4hgt_A Casein kinase I isoform 97.5 7.7E-05 2.6E-09 74.1 5.1 67 644-714 7-73 (296)
403 3q60_A ROP5B; pseudokinase, tr 97.5 8.5E-05 2.9E-09 76.6 5.3 64 645-711 61-130 (371)
404 2jii_A Serine/threonine-protei 97.5 2.5E-05 8.6E-10 80.0 1.3 60 645-709 41-106 (352)
405 3fhr_A MAP kinase-activated pr 97.4 0.00019 6.6E-09 72.7 7.0 63 645-714 27-91 (336)
406 3en9_A Glycoprotease, O-sialog 97.4 9.2E-05 3.2E-09 80.1 4.8 62 649-714 339-408 (540)
407 3sv0_A Casein kinase I-like; t 97.3 0.00027 9.4E-09 75.1 6.5 64 645-712 6-70 (483)
408 3rfe_A Platelet glycoprotein I 97.3 0.00041 1.4E-08 58.8 6.2 61 485-547 12-73 (130)
409 1z57_A Dual specificity protei 97.2 0.0001 3.6E-09 74.8 2.8 68 645-714 13-86 (339)
410 2vx3_A Dual specificity tyrosi 97.2 0.0002 6.7E-09 74.2 4.0 70 642-714 50-125 (382)
411 1zar_A RIO2 kinase; serine kin 97.1 0.00089 3E-08 65.7 7.7 71 638-711 82-170 (282)
412 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00021 7.1E-09 64.9 2.8 66 36-101 37-111 (197)
413 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00018 6.3E-09 65.2 2.4 109 16-124 41-169 (197)
414 2eu9_A Dual specificity protei 97.0 0.00023 7.9E-09 72.7 2.8 68 645-714 18-91 (355)
415 3dzo_A Rhoptry kinase domain; 96.9 0.00032 1.1E-08 73.3 2.8 59 644-704 76-137 (413)
416 3rfe_A Platelet glycoprotein I 96.5 0.0061 2.1E-07 51.5 7.1 55 20-76 12-67 (130)
417 1zth_A RIO1 serine protein kin 96.4 0.0022 7.6E-08 62.0 4.6 58 648-707 49-132 (258)
418 4gyi_A RIO2 kinase; protein ki 93.1 0.034 1.2E-06 56.3 2.2 41 640-683 89-129 (397)
419 3cxl_A N-chimerin; SH2, RHO-GA 92.4 0.016 5.4E-07 61.0 -1.4 58 652-714 148-213 (463)
420 3d1u_A Putative fructosamine-3 89.8 0.4 1.4E-05 46.7 5.9 61 650-713 19-82 (288)
421 3tm0_A Aminoglycoside 3'-phosp 89.2 0.68 2.3E-05 44.2 7.0 68 643-714 11-79 (263)
422 4azs_A Methyltransferase WBDD; 86.8 0.32 1.1E-05 52.6 3.2 60 653-714 241-311 (569)
423 2lz0_A Uncharacterized protein 74.0 4.8 0.00016 31.5 5.1 45 324-369 8-52 (100)
424 2lz0_A Uncharacterized protein 72.5 6.7 0.00023 30.7 5.6 45 492-537 7-51 (100)
425 2ks1_B Epidermal growth factor 68.8 0.81 2.8E-05 29.4 -0.5 28 591-618 12-40 (44)
426 1nd4_A Aminoglycoside 3'-phosp 64.9 6.7 0.00023 36.8 5.1 63 645-713 19-83 (264)
427 2l2t_A Receptor tyrosine-prote 60.6 1.7 5.7E-05 27.9 -0.1 28 592-619 12-40 (44)
428 2jwa_A Receptor tyrosine-prote 56.8 1.2 4.1E-05 28.5 -1.3 8 610-617 32-39 (44)
429 3dxp_A Putative acyl-COA dehyd 56.1 10 0.00035 37.8 4.8 60 651-714 43-107 (359)
430 3f7w_A Putative fructosamine-3 54.5 11 0.00037 36.2 4.5 63 648-713 17-82 (288)
431 3ox7_P MH027; urokinase-type p 50.2 4.5 0.00015 20.5 0.5 10 1-10 5-14 (23)
432 2olc_A MTR kinase, methylthior 46.9 18 0.00061 36.7 4.9 61 651-713 35-105 (397)
433 1iij_A ERBB-2 receptor protein 28.6 5.5 0.00019 24.0 -1.4 7 592-598 10-16 (35)
434 3jr1_A Putative fructosamine-3 22.4 1.2E+02 0.0041 29.3 5.9 57 651-714 41-100 (312)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-70 Score=625.77 Aligned_cols=562 Identities=33% Similarity=0.487 Sum_probs=481.8
Q ss_pred CCCCcccceeeCCCCCCeEEEEcCCCCCCcc---cC-----------------------ccccCCCCCCEEeCCCCCCCc
Q 046340 1 RHFCQWKGVTCSPRHQRVTGLRLPSLLLQGS---LS-----------------------PHIGNLSFLRVLDLKNNSFRD 54 (715)
Q Consensus 1 ~~~c~~~~~~~~~~~~~v~~l~l~~~~l~~~---~~-----------------------~~~~~l~~L~~L~Ls~n~i~~ 54 (715)
.+||+|.||+|. .++|+.|+|+++++.|. ++ ..|+++++|++|||++|.+++
T Consensus 37 ~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~ 114 (768)
T 3rgz_A 37 KNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114 (768)
T ss_dssp SCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEE
T ss_pred CCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCC
Confidence 368999999998 48999999999999886 33 578888999999999999988
Q ss_pred cCCh--hhcCCCCCcEEecCCCcCcccCCccc-cCCCCCCEEEccCCcCccCcccc------------------------
Q 046340 55 EIPQ--EIGYLFRLQILALHNNTFGGQIPDNI-SHCVNLESLGLGVNELVGKVPGK------------------------ 107 (715)
Q Consensus 55 ~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~------------------------ 107 (715)
..|. .++++++|++|+|++|.+.+..|..+ .++++|++|++++|++.+..+..
T Consensus 115 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 194 (768)
T 3rgz_A 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194 (768)
T ss_dssp EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC
T ss_pred cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC
Confidence 7777 88999999999999998887777654 66777777777777766544433
Q ss_pred -ccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCC
Q 046340 108 -LGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSL 186 (715)
Q Consensus 108 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 186 (715)
+..+++|++|++++|++++..|. +.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|.. .+++|
T Consensus 195 ~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L 271 (768)
T 3rgz_A 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 271 (768)
T ss_dssp BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTC
T ss_pred CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCC
Confidence 25678888889999998877776 999999999999999999888999999999999999999998877754 88999
Q ss_pred cEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceecccc--ccCcCCCcEEEcc
Q 046340 187 THFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS--LENLYKLQWVSIS 264 (715)
Q Consensus 187 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~--~~~l~~L~~L~l~ 264 (715)
++|++++|++++.+|..++..+++|++|++++|.+++..|..+.++++|++|++++|.+.+..+. +..+++|++|+++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 99999999999889988875569999999999999988999999999999999999999865553 8888999999999
Q ss_pred cCCCCC-CCCCC-----cc------------cccccccc--CCCCCEEEccCCcccccCChhHhhccccCcEEEccccce
Q 046340 265 HNHLGN-YGEKD-----NL------------EFVNSLVN--ASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQL 324 (715)
Q Consensus 265 ~n~l~~-~~~~~-----~~------------~~~~~l~~--~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i 324 (715)
+|.++. ++..- .+ ..+..+.. +++|+.|++++|.+++.+|..+..++. |+.|++++|.+
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l 430 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYL 430 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT-CCEEECCSSEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC-CCEEECcCCcc
Confidence 988762 22110 00 01112222 567888888888888888888887755 88999999988
Q ss_pred eecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCccc
Q 046340 325 FGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSL 404 (715)
Q Consensus 325 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 404 (715)
++..|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+.++++|++|++++|++.+..|..+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 88888888888899999999998888888888889999999999999988888889999999999999999998889889
Q ss_pred ccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCc---------------------------------
Q 046340 405 GKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPP--------------------------------- 451 (715)
Q Consensus 405 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~--------------------------------- 451 (715)
..+++|++|++++|++.+.+|..+..++.+ +.|++++|++++.+|.
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 999999999999999988888888888888 7899999988765554
Q ss_pred -------------------------------------CCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCccc
Q 046340 452 -------------------------------------NFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQ 494 (715)
Q Consensus 452 -------------------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 494 (715)
.|..+++|+.|||++|++++.+|..++++++|+.|+|++|+++
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence 3444678999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCccccCCCCCCCCcc
Q 046340 495 GNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVKGVFSNSSAISLDGNDNLCGGI 569 (715)
Q Consensus 495 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 569 (715)
+.+|..|+++++|+.|||++|++++.+|..|..+++|++|++++|+++|.+|..+.+.++....+.|||+.|+.+
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 999999999999999999999999999999999999999999999999999998889999999999999999854
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.8e-61 Score=546.32 Aligned_cols=562 Identities=21% Similarity=0.202 Sum_probs=480.0
Q ss_pred CcccceeeCCC--CCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCC
Q 046340 4 CQWKGVTCSPR--HQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIP 81 (715)
Q Consensus 4 c~~~~~~~~~~--~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (715)
|++.+++..|. +.+++.|++++|.+++..+..|+++++|++|||++|.+++..|+.|.++++|++|+|++|+++...+
T Consensus 11 cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 11 CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence 44444544443 4799999999999999888899999999999999999999999999999999999999999997777
Q ss_pred ccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCcccc--CC
Q 046340 82 DNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLS--EL 159 (715)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~l 159 (715)
..|+++++|++|++++|++.++.+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+. .+
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 7899999999999999999988889999999999999999999988888999999999999999999988777654 56
Q ss_pred CCCCEEEeecccCcccCCccccCC---------------------------CCCcEEEccCCccceecCcchhcCC--CC
Q 046340 160 KMMRYISFGENKLSGEIPFSIYNL---------------------------SSLTHFYFPFNQLQGSLPSDLGFTL--PN 210 (715)
Q Consensus 160 ~~L~~L~L~~n~i~~~~~~~l~~l---------------------------~~L~~L~l~~n~i~~~~~~~~~~~l--~~ 210 (715)
++|++|++++|.+++..|..+..+ ++|+.|++++|.+.+..|..+. .+ ++
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~ 249 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTN 249 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCC
Confidence 899999999999998888777655 4567777777877765555543 44 45
Q ss_pred CCEEEeeCccccccCCccccCCCCCCEEEeecccceecccc-ccCcCCCcEEEcccCCCCCCCCCCcccc--ccccccCC
Q 046340 211 LEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS-LENLYKLQWVSISHNHLGNYGEKDNLEF--VNSLVNAS 287 (715)
Q Consensus 211 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~~l~~~~ 287 (715)
|+.|++++|.+++..+..+..+++|++|++++|.+.+..+. +..+++|+.|++++|..........+.. ...+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 99999999999888888888999999999999988887665 8888999999998765432100000000 01567889
Q ss_pred CCCEEEccCCcccccCChhHhhccccCcEEEcccccee--ecCCccccCC--CCCCEEEcCCceeeeecCccccCCCCcc
Q 046340 288 RLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLF--GNIPSGLRNL--VNLELLHLGGNQFTGQIPGSIGDLHKLQ 363 (715)
Q Consensus 288 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 363 (715)
+|+.|++++|.+.+..+..+..++. |++|++++|.+. ......|..+ ++|+.|++++|++++..+..|..+++|+
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCccCCCChhHhccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 9999999999999888888888765 999999999743 3333444433 5899999999999999999999999999
Q ss_pred EEEccCCcccccCC-ccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccc--cccCccccccccccceEEc
Q 046340 364 WLMLPANEFWGEIP-SSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLS--GTIPTEVIGLSSLSIYLDL 440 (715)
Q Consensus 364 ~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~~~~l~~~L~L 440 (715)
+|++++|.+.+..+ ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..+..++.+ +.|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEEC
Confidence 99999999987555 68999999999999999999999999999999999999999987 4678888888888 89999
Q ss_pred cCCcccccCCcCCcCCCCCCceeccCCcCccccC--------hhhhcCcccccccccCCcccccCcccCCCCCCCCEEeC
Q 046340 441 SQNQLNGSLPPNFGILKNLGGIDISENKLSGEIP--------NSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDL 512 (715)
Q Consensus 441 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 512 (715)
++|++++..+..|.++++|++|++++|++++..+ ..|.++++|++|++++|+++.+.+..|.++++|+.|+|
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 9999998888899999999999999999986532 24788999999999999999777788999999999999
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCCcccccCCCC-C-CCCCCCccccCCCCCCCCc
Q 046340 513 SRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVK-G-VFSNSSAISLDGNDNLCGG 568 (715)
Q Consensus 513 ~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~-~-~~~~~~~~~~~~n~~~c~~ 568 (715)
++|+++++++..|.++++|++|++++|.+++..+.. . .+++++.+++.+|||.|+.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999999999999999999999999999999866532 2 4678999999999999963
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.5e-61 Score=550.63 Aligned_cols=518 Identities=33% Similarity=0.504 Sum_probs=419.8
Q ss_pred CCeEEEEcCCCCCCcccCccc-cCCCCCCEEeCCCCCCCccCChh---h----------------------cCCCCCcEE
Q 046340 16 QRVTGLRLPSLLLQGSLSPHI-GNLSFLRVLDLKNNSFRDEIPQE---I----------------------GYLFRLQIL 69 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~---~----------------------~~l~~L~~L 69 (715)
.+++.|+|++|.+.+..+..+ .++++|++|||++|.+++..+.. + ..+++|++|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 205 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence 455666666666655555443 55555555555555555444433 3 456666666
Q ss_pred ecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcce
Q 046340 70 ALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFV 149 (715)
Q Consensus 70 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 149 (715)
+|++|++.+..|. ++++++|++|++++|.+.+..|..|..+++|++|++++|.+++..|.. .+++|++|++++|.++
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccC
Confidence 6666666655555 677777777777777777667777777777777777777776655543 6777777777777777
Q ss_pred ecCCccccCC-CCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCcc
Q 046340 150 GQFPETLSEL-KMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPAS 228 (715)
Q Consensus 150 ~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 228 (715)
+..|..+... ++|++|++++|.+++..|..+..+++|+.|++++|++.+.+|...+..+++|++|++++|.+++..|..
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 7777766554 888888888888888888888888888888888888887888775557888888888888888778887
Q ss_pred ccCCC-CCCEEEeecccceecccc-ccC--cCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCC
Q 046340 229 ISNAS-NLMRLTIAKNGFSGRVPS-LEN--LYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLP 304 (715)
Q Consensus 229 l~~~~-~L~~L~L~~n~~~~~~~~-~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~ 304 (715)
+..++ +|++|++++|.+.+..+. +.. +++|++|++++|.++. ..+..+..+++|+.|++++|.+++..|
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-------~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-------KIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE-------ECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc-------ccCHHHhcCCCCCEEECcCCcccCccc
Confidence 87776 888888888888765554 444 6788888888887764 234568889999999999999999999
Q ss_pred hhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCC
Q 046340 305 EAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLT 384 (715)
Q Consensus 305 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 384 (715)
..+..++. |+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+..++
T Consensus 436 ~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 436 SSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp GGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 99998865 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccccCccccc----------------------------------
Q 046340 385 SLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIG---------------------------------- 430 (715)
Q Consensus 385 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---------------------------------- 430 (715)
+|++|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998777765432
Q ss_pred ------------------------------------cccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccC
Q 046340 431 ------------------------------------LSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIP 474 (715)
Q Consensus 431 ------------------------------------~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 474 (715)
++.+ +.|||++|++++.+|..|+.+++|+.|+|++|++++.+|
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM-MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC-CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccc-cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 2344 789999999999999999999999999999999999999
Q ss_pred hhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 475 NSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 475 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
..++++++|+.|+|++|++++.+|..|..++.|+.||+++|++++.+|.. ..+..+......+|+.-|-.|
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCC
Confidence 99999999999999999999999999999999999999999999999864 223345555677777554333
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-57 Score=518.11 Aligned_cols=523 Identities=21% Similarity=0.221 Sum_probs=462.2
Q ss_pred CCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEc
Q 046340 16 QRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 95 (715)
.+++.|++++|.+.+..+..|+++++|++|+|++|.++++.+..|+++++|++|+|++|++++..+..|+++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 68999999999999999999999999999999999999887778999999999999999999888889999999999999
Q ss_pred cCCcCccCccccccCCCCCCEEEeeccccccccCcccc--CCCCCCEEEcccCcceecCCccccCC--------------
Q 046340 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFG--NLSSLEFLSAAANQFVGQFPETLSEL-------------- 159 (715)
Q Consensus 96 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~l-------------- 159 (715)
++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 99999999999999999999999999999977666554 56899999999999998888766543
Q ss_pred -------------CCCCEEEeecccCcccCCccccCCCC--CcEEEccCCccceecCcchhcCCCCCCEEEeeCcccccc
Q 046340 160 -------------KMMRYISFGENKLSGEIPFSIYNLSS--LTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGP 224 (715)
Q Consensus 160 -------------~~L~~L~L~~n~i~~~~~~~l~~l~~--L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 224 (715)
++|+.|++++|.+++..|..+..++. |+.|++++|++++..|..+ ..+++|+.|++++|.+++.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEE
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCccCcc
Confidence 56788899999999888888988865 9999999999985555554 4899999999999999999
Q ss_pred CCccccCCCCCCEEEeeccccee---------ccc-cccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEc
Q 046340 225 IPASISNASNLMRLTIAKNGFSG---------RVP-SLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEI 294 (715)
Q Consensus 225 ~~~~l~~~~~L~~L~L~~n~~~~---------~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~l 294 (715)
.+..+.++++|+.|++++|...+ ... .+..+++|++|++++|.++.+.. ..+..+++|++|++
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-------NMFTGLINLKYLSL 360 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT-------TTTTTCTTCCEEEC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh-------hHhccccCCcEEEC
Confidence 99999999999999999875442 111 37889999999999999987443 35778999999999
Q ss_pred cCCcccc--cCChhHhhcc-ccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecC-ccccCCCCccEEEccCC
Q 046340 295 SDNNFGG--MLPEAVGNLS-TRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIP-GSIGDLHKLQWLMLPAN 370 (715)
Q Consensus 295 s~n~i~~--~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n 370 (715)
++|.+.. .....+..+. ..|+.|++++|.+++..+.+|..+++|+.|++++|.+.+..+ ..|.++++|++|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 9997542 2223333322 359999999999999999999999999999999999987655 78999999999999999
Q ss_pred cccccCCccccCCCCCCeEeccCCccc--ccCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCccccc
Q 046340 371 EFWGEIPSSIGNLTSLAILAFDENMLE--GSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGS 448 (715)
Q Consensus 371 ~i~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~ 448 (715)
.+.+..+..|..+++|+.|++++|.+. +..|..|..+++|+.|++++|++++..+..+.+++.+ +.|++++|++++.
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLARL 519 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGG
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCcccc
Confidence 999999999999999999999999987 5678899999999999999999997777778888888 8999999999875
Q ss_pred CC--------cCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCccccc
Q 046340 449 LP--------PNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGR 520 (715)
Q Consensus 449 ~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 520 (715)
.+ ..|.++++|++|++++|+++...+..|.++++|++|++++|+++++.+..|.++++|+.|++++|++++.
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 32 3478899999999999999977777899999999999999999998899999999999999999999999
Q ss_pred CCcccc-CCCCCCEEeCCCCcccccCCC
Q 046340 521 IPKYFE-NFFFLQNLNLSSNHFEGEVPV 547 (715)
Q Consensus 521 ~~~~~~-~~~~L~~L~ls~N~l~~~~~~ 547 (715)
.+..|. .+++|+.+++++|++.|.++.
T Consensus 600 ~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 600 EKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ChhHhcccccccCEEEccCCCcccCCcc
Confidence 988887 789999999999999998874
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-57 Score=510.98 Aligned_cols=515 Identities=20% Similarity=0.153 Sum_probs=282.4
Q ss_pred CCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEc
Q 046340 16 QRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 95 (715)
..++.|++++|.+++..+..|+++++|++|+|++|.++++.|+.|.++++|++|+|++|++++..|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCC--EEEeecccCc
Q 046340 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMR--YISFGENKLS 173 (715)
Q Consensus 96 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~L~~n~i~ 173 (715)
++|.+.+..+..|.++++|++|++++|++++.....+..+++|++|++++|.+.+..+..|..+++|+ .|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 55555554455555555555555555555543323333455555555555555555555555555555 5555555555
Q ss_pred ccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCcccc-----ccCCccccCCC--CCCEEEeecccce
Q 046340 174 GEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFT-----GPIPASISNAS--NLMRLTIAKNGFS 246 (715)
Q Consensus 174 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~~~--~L~~L~L~~n~~~ 246 (715)
+..|..+.. .+|+.|++++|.. ++..+. .+.+++...+....+. ...+..+..+. +|+.|++++|.+.
T Consensus 193 ~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~-~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 193 GIEPGAFDS-AVFQSLNFGGTQN---LLVIFK-GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp EECTTTTTT-CEEEEEECTTCSC---HHHHHH-HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred ccChhHhhh-ccccccccCCchh---HHHHhh-hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 544443332 3455555555431 111111 2222222222211111 11111222221 4566666666665
Q ss_pred ecccc-ccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEcccccee
Q 046340 247 GRVPS-LENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLF 325 (715)
Q Consensus 247 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~ 325 (715)
+..+. +..+++|++|++++|.++.++ ..+..+++|++|++++|.+.+..|..+..++. |++|++++|.+.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~ 338 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELP--------SGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKR 338 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCC--------SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-CSEEECCSCSSC
T ss_pred ccCHHHhccccCCCEEeccCCccCCCC--------hhhcccccCCEEECccCCcCcCchhhhhccCc-CCEEECCCCCcc
Confidence 55444 566666666666666655432 23445566666666666666555555555543 666666666655
Q ss_pred ecCC-ccccCCCCCCEEEcCCceeeeec--CccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCc
Q 046340 326 GNIP-SGLRNLVNLELLHLGGNQFTGQI--PGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPS 402 (715)
Q Consensus 326 ~~~~-~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 402 (715)
+..+ ..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..|..+++|++|++++|++.+..+.
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 3332 33556666666666666665544 45566666666666666666655566666666666666666666554433
Q ss_pred -ccccCCCCCEEeCcCcccccccCccccccccccceEEccCCccccc---CCcCCcCCCCCCceeccCCcCccccChhhh
Q 046340 403 -SLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGS---LPPNFGILKNLGGIDISENKLSGEIPNSLG 478 (715)
Q Consensus 403 -~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 478 (715)
.|..+++|+.|++++|.+.+..+..+..++.+ +.|++++|++++. .+..+..+++|++|++++|++++..|..|.
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred hhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc
Confidence 25566666666666666665555555555555 5666666666542 223455666666666666666655566666
Q ss_pred cCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 479 SCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 479 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
++++|++|++++|++++..|..|.+++.| .|++++|++++.+|+.|..+++|++|++++|++.|.++
T Consensus 498 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 66666666666666666666666666666 66666666666666666666666666666666665554
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.5e-57 Score=504.11 Aligned_cols=515 Identities=20% Similarity=0.163 Sum_probs=412.2
Q ss_pred CCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEE
Q 046340 15 HQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLG 94 (715)
Q Consensus 15 ~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (715)
+.+++.|++++|.+++..+..|+++++|++|+|++|.++++.|..|.++++|++|+|++|++++..|..|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 36788888888888877777888888888888888888877777788888888888888888877778888888888888
Q ss_pred ccCCcCccCccccccCCCCCCEEEeecccccc-ccCccccCCCCCCEEEcccCcceecCCccccCCCCCC----EEEeec
Q 046340 95 LGVNELVGKVPGKLGSLSKLWILSVHYNSLSG-EIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMR----YISFGE 169 (715)
Q Consensus 95 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~L~~ 169 (715)
+++|.+.+..+..|+++++|++|++++|.+++ .+|..|.++++|++|++++|.+++..+..|..+++|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 88888877777778888888888888888765 4577788888888888888888877777666655544 788888
Q ss_pred ccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccc------cCCccccCCC--CCCEEEe-
Q 046340 170 NKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTG------PIPASISNAS--NLMRLTI- 240 (715)
Q Consensus 170 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~~~--~L~~L~L- 240 (715)
|.+++..+..+... +|+.|++++|.+.+.........++.++.+++..+.+.. ..+..+..+. .++++++
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 88876666555554 788888888877643333334477777777776544332 1111222222 3555666
Q ss_pred ecccceeccccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEcc
Q 046340 241 AKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVG 320 (715)
Q Consensus 241 ~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~ 320 (715)
..+.+.+..+.+..+++|+.+++++|.+..++ .+..+++|+.|++++|.+ +.+|. + .+ +.|++|+++
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---------~l~~~~~L~~L~l~~n~l-~~lp~-~-~l-~~L~~L~l~ 336 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---------DVPKHFKWQSLSIIRCQL-KQFPT-L-DL-PFLKSLTLT 336 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---------CCCTTCCCSEEEEESCCC-SSCCC-C-CC-SSCCEEEEE
T ss_pred ccccccccccccccCCCCCEEEecCccchhhh---------hccccccCCEEEcccccC-ccccc-C-CC-Cccceeecc
Confidence 56677777777888999999999999886543 466788999999999999 46664 3 55 459999999
Q ss_pred ccceeecCCccccCCCCCCEEEcCCceeeeec--CccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccc
Q 046340 321 NNQLFGNIPSGLRNLVNLELLHLGGNQFTGQI--PGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEG 398 (715)
Q Consensus 321 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 398 (715)
+|...+.. .+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+ .+..|..+++|+.|++++|.+.+
T Consensus 337 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 337 MNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp SCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEES
T ss_pred CCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCC
Confidence 99655433 5778999999999999998763 7889999999999999999866 44788999999999999999998
Q ss_pred cCC-cccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccc-cCCcCCcCCCCCCceeccCCcCccccChh
Q 046340 399 SIP-SSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG-SLPPNFGILKNLGGIDISENKLSGEIPNS 476 (715)
Q Consensus 399 ~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 476 (715)
..+ ..|..+++|++|++++|++.+..|..+.+++.+ +.|++++|.+++ ..|..|..+++|++|++++|++++..|..
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 877 678999999999999999998888888888888 899999999997 47888999999999999999999888899
Q ss_pred hhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCC-CCCEEeCCCCcccccCCCC
Q 046340 477 LGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFF-FLQNLNLSSNHFEGEVPVK 548 (715)
Q Consensus 477 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~L~~L~ls~N~l~~~~~~~ 548 (715)
|.++++|++|++++|++++..|..|.++++|+.|++++|+++.+++ .+..++ +|++|++++|++.|.++..
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~-~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG-ILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES-CGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH-hHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999999999999999889999999999999999999986544 488887 5999999999999988754
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-56 Score=503.37 Aligned_cols=529 Identities=22% Similarity=0.215 Sum_probs=456.0
Q ss_pred EEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCc
Q 046340 20 GLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNE 99 (715)
Q Consensus 20 ~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 99 (715)
.++.++.+++ .+|..+.. ++++|||++|.|+++.+..|.++++|++|+|++|++++..|.+|.++++|++|++++|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 5677777776 34555543 78999999999999989999999999999999999999999999999999999999999
Q ss_pred CccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCcc
Q 046340 100 LVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFS 179 (715)
Q Consensus 100 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 179 (715)
+.+..|.+|.++++|++|++++|++++..+..|.++++|++|++++|.+.+.....+.++++|++|++++|.+++..+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 99999999999999999999999999777888999999999999999999876666667999999999999999888889
Q ss_pred ccCCCCCc--EEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeeccccee-----cccc-
Q 046340 180 IYNLSSLT--HFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSG-----RVPS- 251 (715)
Q Consensus 180 l~~l~~L~--~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~-----~~~~- 251 (715)
+..+++|+ .|++++|.+++..|.. + ...+|+.|++++|.. .+..+..+.++....+.-..+.. ..+.
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTT-T-TTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhcccceeEEecCCCccCccChhH-h-hhccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhH
Confidence 99999999 8999999999655544 3 457899999999862 23344555555444443332221 1111
Q ss_pred ccCcC--CCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCC
Q 046340 252 LENLY--KLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIP 329 (715)
Q Consensus 252 ~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 329 (715)
+..+. +|+.+++++|.++.+.. ..+..+++|+.|++++|.++ .+|..+..++. |++|++++|.+.+..+
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~-L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISS-------NTFHCFSGLQELDLTATHLS-ELPSGLVGLST-LKKLVLSANKFENLCQ 318 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCT-------TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTT-CCEEECTTCCCSBGGG
T ss_pred hchhhcCceeEEEeecCccCccCH-------HHhccccCCCEEeccCCccC-CCChhhccccc-CCEEECccCCcCcCch
Confidence 33333 79999999999987543 25778899999999999998 56777777754 9999999999998888
Q ss_pred ccccCCCCCCEEEcCCceeeeec-CccccCCCCccEEEccCCcccccC--CccccCCCCCCeEeccCCcccccCCccccc
Q 046340 330 SGLRNLVNLELLHLGGNQFTGQI-PGSIGDLHKLQWLMLPANEFWGEI--PSSIGNLTSLAILAFDENMLEGSIPSSLGK 406 (715)
Q Consensus 330 ~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 406 (715)
..+.++++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.. +..+.++++|++|++++|.+.+..+..|..
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 89999999999999999988544 456999999999999999998776 778999999999999999999999999999
Q ss_pred CCCCCEEeCcCcccccccCcc-ccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccc---cChhhhcCcc
Q 046340 407 CQNLILLDLSNNNLSGTIPTE-VIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGE---IPNSLGSCIR 482 (715)
Q Consensus 407 ~~~L~~L~L~~n~l~~~~~~~-~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~ 482 (715)
+++|++|++++|++.+..+.. +..++.+ +.|++++|.+++..+..|..+++|++|++++|++.+. .+..+..+++
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccC-CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 999999999999998765544 7778888 8999999999998899999999999999999999863 3467899999
Q ss_pred cccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCC-CCCCCCCccccCC
Q 046340 483 LEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVK-GVFSNSSAISLDG 561 (715)
Q Consensus 483 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~-~~~~~~~~~~~~~ 561 (715)
|++|++++|.+++..|..|..+++|+.|++++|++++..|+.|..++.| .|++++|.+++..|.. ..+++++.+++.+
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 9999999999999999999999999999999999999999999999999 9999999999876643 4467889999999
Q ss_pred CCCCCC
Q 046340 562 NDNLCG 567 (715)
Q Consensus 562 n~~~c~ 567 (715)
||+.|+
T Consensus 557 N~~~c~ 562 (606)
T 3t6q_A 557 NPLDCT 562 (606)
T ss_dssp CCEECS
T ss_pred CCcccc
Confidence 999995
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-55 Score=505.32 Aligned_cols=510 Identities=20% Similarity=0.182 Sum_probs=332.4
Q ss_pred CCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCC-CccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEE
Q 046340 15 HQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSF-RDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESL 93 (715)
Q Consensus 15 ~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (715)
+.+++.|+|++|.+++..+..|.++++|++|||++|.. ..+.|+.|.++++|++|+|++|.+++..|+.|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 47788888888888887788888888888888888844 33447778888888888888888887778888888888888
Q ss_pred EccCCcCccCcccc--ccCCCCCCEEEeeccccccccC-ccccCCCCCCEEEcccCcceecCCccccCC--CCCCEEEee
Q 046340 94 GLGVNELVGKVPGK--LGSLSKLWILSVHYNSLSGEIP-SSFGNLSSLEFLSAAANQFVGQFPETLSEL--KMMRYISFG 168 (715)
Q Consensus 94 ~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~L~ 168 (715)
+|++|.+.+..+.. |.++++|++|+|++|.+++..+ ..|.++++|++|++++|.+.+..+..|..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 88888887655544 7888888888888888876544 467888888888888888887777777766 778888888
Q ss_pred cccCcccCCccccCCCC------CcEEEccCCccceecCcchhcC--CCCCCEEEeeCc---------cccccCCccccC
Q 046340 169 ENKLSGEIPFSIYNLSS------LTHFYFPFNQLQGSLPSDLGFT--LPNLEVLNVGGN---------QFTGPIPASISN 231 (715)
Q Consensus 169 ~n~i~~~~~~~l~~l~~------L~~L~l~~n~i~~~~~~~~~~~--l~~L~~L~L~~n---------~l~~~~~~~l~~ 231 (715)
+|.+.+..|..+..+++ |+.|++++|.+.+..+..+... ...++.+.++.+ .+.+.....|.+
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 88887777766666555 8888888887776666655432 245667766532 222223333443
Q ss_pred C--CCCCEEEeecccceecccc-ccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHh
Q 046340 232 A--SNLMRLTIAKNGFSGRVPS-LENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVG 308 (715)
Q Consensus 232 ~--~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~ 308 (715)
+ ++|++|++++|.+.+..+. +..+++|+.|++++|++..+.. ..+..+++|+.|++++|.+.+..+..+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-------EAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT-------TTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh-------HHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 3 5667777776666655444 6666666666666666654221 2455566666666666666655555555
Q ss_pred hccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCe
Q 046340 309 NLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAI 388 (715)
Q Consensus 309 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 388 (715)
.++. |+.|++++|.+....+..|.++++|+.|+|++|.+++. ..+++|+.|++++|.++.. |. ...+++.
T Consensus 336 ~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~~---~~~~l~~ 405 (844)
T 3j0a_A 336 GLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-PK---INLTANL 405 (844)
T ss_dssp SCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-CC---CCTTCCE
T ss_pred CCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-cc---cccccce
Confidence 5543 66666666666665555666666666666666666532 2256666666666666432 21 1345666
Q ss_pred EeccCCcccccCCc-ccccCCCCCEEeCcCcccccccCc-cccccccccceEEccCCcccc-----cCCcCCcCCCCCCc
Q 046340 389 LAFDENMLEGSIPS-SLGKCQNLILLDLSNNNLSGTIPT-EVIGLSSLSIYLDLSQNQLNG-----SLPPNFGILKNLGG 461 (715)
Q Consensus 389 L~l~~n~i~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~~L~Ls~n~i~~-----~~~~~~~~l~~L~~ 461 (715)
|++++|++.+.... .+..+++|+.|++++|++++..+. .+..++++ +.|++++|.++. ..+..|.++++|+.
T Consensus 406 L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL-EQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp EECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-CBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred eecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-ccccCCCCccccccccccchhhhcCcccccE
Confidence 66666666643222 234566666666666666543222 22334444 566666666652 23345666666666
Q ss_pred eeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcc
Q 046340 462 IDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 541 (715)
Q Consensus 462 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l 541 (715)
|+|++|++++..|..|.++++|++|+|++|++++.++..+. ++|+.|++++|++++..|+.|. +|+.+++++|++
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~ 559 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKF 559 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECC
T ss_pred EECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCc
Confidence 66666666666666666666666666666666665555554 5666666666666666665543 466666666666
Q ss_pred cccCCC
Q 046340 542 EGEVPV 547 (715)
Q Consensus 542 ~~~~~~ 547 (715)
.|.++.
T Consensus 560 ~C~c~~ 565 (844)
T 3j0a_A 560 ICECEL 565 (844)
T ss_dssp CCSSSC
T ss_pred cccccc
Confidence 666554
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-54 Score=486.48 Aligned_cols=527 Identities=19% Similarity=0.168 Sum_probs=450.1
Q ss_pred EEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCC
Q 046340 19 TGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVN 98 (715)
Q Consensus 19 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 98 (715)
+.++.++++++.. |..+. +++++|+|++|.+++..+..|.++++|++|+|++|++++..|.+|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 3577788888754 55444 89999999999999998889999999999999999999988999999999999999999
Q ss_pred cCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCccee-cCCccccCCCCCCEEEeecccCcccCC
Q 046340 99 ELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVG-QFPETLSELKMMRYISFGENKLSGEIP 177 (715)
Q Consensus 99 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~ 177 (715)
.+.+..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+.+ ..|..|.++++|++|++++|.+++..+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 9999989999999999999999999997777889999999999999999986 458899999999999999999999888
Q ss_pred ccccCCCCCc----EEEccCCccceecCcchhcCCCCCCEEEeeCcccc-ccCCccccCCCCCCEEEeecccceecc---
Q 046340 178 FSIYNLSSLT----HFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFT-GPIPASISNASNLMRLTIAKNGFSGRV--- 249 (715)
Q Consensus 178 ~~l~~l~~L~----~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~L~~n~~~~~~--- 249 (715)
..++.+++|+ .+++++|.++ .++...+ ...+|+.|++++|.+. +..+..+.++++++.+++..+.+....
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 8888877665 8999999998 6666666 3448999999999886 456778899999999988765543211
Q ss_pred ---cc-ccCcC--CCcEEEc-ccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEcccc
Q 046340 250 ---PS-LENLY--KLQWVSI-SHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNN 322 (715)
Q Consensus 250 ---~~-~~~l~--~L~~L~l-~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n 322 (715)
.. +..+. .++.+++ ..+.+.. ....+..+++|+.|++++|.+.. +| .+..++ +|++|++++|
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~--------~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~-~L~~L~l~~n 317 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSD--------DIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHF-KWQSLSIIRC 317 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCG--------GGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTC-CCSEEEEESC
T ss_pred ccChHHhhhhhhccHhheeccccccccc--------cccccccCCCCCEEEecCccchh-hh-hccccc-cCCEEEcccc
Confidence 11 22222 3445555 3344332 22237788999999999999974 44 555554 5999999999
Q ss_pred ceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCccccc--CCccccCCCCCCeEeccCCcccccC
Q 046340 323 QLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGE--IPSSIGNLTSLAILAFDENMLEGSI 400 (715)
Q Consensus 323 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~i~~~~ 400 (715)
.+ +.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ .
T Consensus 318 ~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~ 391 (606)
T 3vq2_A 318 QL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-M 391 (606)
T ss_dssp CC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-E
T ss_pred cC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-c
Confidence 99 4666 45 9999999999999655433 677999999999999999876 37889999999999999999986 5
Q ss_pred CcccccCCCCCEEeCcCcccccccC-ccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCcc-ccChhhh
Q 046340 401 PSSLGKCQNLILLDLSNNNLSGTIP-TEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSG-EIPNSLG 478 (715)
Q Consensus 401 ~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~ 478 (715)
|..|..+++|+.|++++|++.+..+ ..+..++.+ +.|++++|.+.+..|..|..+++|++|++++|.+.+ ..|..+.
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence 5789999999999999999997766 577788888 899999999999999999999999999999999997 4788999
Q ss_pred cCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCCCCCC-CCCcc
Q 046340 479 SCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVKGVFS-NSSAI 557 (715)
Q Consensus 479 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~-~~~~~ 557 (715)
.+++|++|++++|++++..|..|.++++|+.|++++|++++..|..|.++++|++|++++|+++..++....++ +++.+
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999996554333343 68999
Q ss_pred ccCCCCCCCCc
Q 046340 558 SLDGNDNLCGG 568 (715)
Q Consensus 558 ~~~~n~~~c~~ 568 (715)
++.+||+.|+.
T Consensus 551 ~l~~N~~~c~c 561 (606)
T 3vq2_A 551 NLTNNSVACIC 561 (606)
T ss_dssp ECCSCCCCCSS
T ss_pred EccCCCcccCC
Confidence 99999999963
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-54 Score=500.16 Aligned_cols=522 Identities=22% Similarity=0.232 Sum_probs=443.0
Q ss_pred EEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcc-cCCccccCCCCCCEEEccCC
Q 046340 20 GLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGG-QIPDNISHCVNLESLGLGVN 98 (715)
Q Consensus 20 ~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n 98 (715)
.++.++++++.. |. -.+++++|||++|.|+++.+..|.++++|++|+|++|.... +.|.+|.++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 455567788755 43 45899999999999999999999999999999999995543 44889999999999999999
Q ss_pred cCccCccccccCCCCCCEEEeeccccccccCcc--ccCCCCCCEEEcccCcceecCC-ccccCCCCCCEEEeecccCccc
Q 046340 99 ELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSS--FGNLSSLEFLSAAANQFVGQFP-ETLSELKMMRYISFGENKLSGE 175 (715)
Q Consensus 99 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~i~~~ 175 (715)
.+.+..|.+|.++++|++|+|++|.+++..+.. |.++++|++|++++|.+.+..+ ..|.++++|++|++++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999999999999999999999999999766554 9999999999999999988765 5799999999999999999999
Q ss_pred CCccccCC--CCCcEEEccCCccceecCcchhcCCC------CCCEEEeeCccccccCCccccCC---CCCCEEEeeccc
Q 046340 176 IPFSIYNL--SSLTHFYFPFNQLQGSLPSDLGFTLP------NLEVLNVGGNQFTGPIPASISNA---SNLMRLTIAKNG 244 (715)
Q Consensus 176 ~~~~l~~l--~~L~~L~l~~n~i~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~~---~~L~~L~L~~n~ 244 (715)
.+..+..+ ++|+.|+++.|.+.+..|..+. .++ .|+.|++++|.+++..+..+... ..++.+.+..+.
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred CHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 89899888 8999999999999877776544 333 49999999999887777666543 578888887443
Q ss_pred ce---------ecccc-ccCc--CCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccc
Q 046340 245 FS---------GRVPS-LENL--YKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLST 312 (715)
Q Consensus 245 ~~---------~~~~~-~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~ 312 (715)
.. ..... +..+ ++|+.|++++|.+..+. ...+..+++|+.|++++|.+.+..+..+..++.
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 315 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-------SRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC-------SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccC-------hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC
Confidence 32 11111 4443 68999999999987633 235778999999999999999888888888765
Q ss_pred cCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEecc
Q 046340 313 RLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFD 392 (715)
Q Consensus 313 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 392 (715)
|++|++++|.+++..+..|.++++|+.|++++|.+....+..|..+++|++|++++|.+++. ..+++|+.|+++
T Consensus 316 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~ 389 (844)
T 3j0a_A 316 -LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLS 389 (844)
T ss_dssp -CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEE
T ss_pred -CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccC
Confidence 99999999999988899999999999999999999988888999999999999999998643 338899999999
Q ss_pred CCcccccCCcccccCCCCCEEeCcCcccccccC-ccccccccccceEEccCCcccccCCc-CCcCCCCCCceeccCCcCc
Q 046340 393 ENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIP-TEVIGLSSLSIYLDLSQNQLNGSLPP-NFGILKNLGGIDISENKLS 470 (715)
Q Consensus 393 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~ 470 (715)
+|++... |.. ..+++.|++++|++.+... ..+..++.+ +.|+|++|++++..+. .+..+++|+.|++++|.+.
T Consensus 390 ~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 390 GNKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp SCCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred CCCcccc-ccc---ccccceeecccCccccCchhhhhhcCCcc-ceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence 9999844 433 5689999999999985322 223467777 8999999999976543 5667899999999999997
Q ss_pred -----cccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccC
Q 046340 471 -----GEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEV 545 (715)
Q Consensus 471 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 545 (715)
+..+..|.++++|++|+|++|.+++.++..|.++++|+.|+|++|+++++++..+. ++|+.|++++|.+++..
T Consensus 465 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN 542 (844)
T ss_dssp SSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred cccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC
Confidence 44556789999999999999999999999999999999999999999998888876 89999999999999988
Q ss_pred CCCCCCCCCCccccCCCCCCCCc
Q 046340 546 PVKGVFSNSSAISLDGNDNLCGG 568 (715)
Q Consensus 546 ~~~~~~~~~~~~~~~~n~~~c~~ 568 (715)
| ..+.++..+++.+||+.|+.
T Consensus 543 ~--~~~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 543 P--DVFVSLSVLDITHNKFICEC 563 (844)
T ss_dssp S--CCCSSCCEEEEEEECCCCSS
T ss_pred h--hHhCCcCEEEecCCCccccc
Confidence 8 44678999999999999953
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-51 Score=454.53 Aligned_cols=490 Identities=20% Similarity=0.192 Sum_probs=315.7
Q ss_pred CCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEc
Q 046340 16 QRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 95 (715)
..++.|++++|.+++..+..|.++++|++|||++|.++++.++.|.++++|++|+|++|+++...+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 34555555555555444444555555555555555554444444555555555555555554444444555555555555
Q ss_pred cCCcCccCccccccCCCCCCEEEeecccccc-ccCccccCCCCCCEEEcccCcceecCCccccCCCCC----CEEEeecc
Q 046340 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSG-EIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMM----RYISFGEN 170 (715)
Q Consensus 96 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~L~~n 170 (715)
++|++.+..+..|+++++|++|++++|.+++ .+|..|.++++|++|++++|.+.+..+..+..+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 5555444443344455555555555554443 234444445555555555555444444444444444 44444444
Q ss_pred cCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccc-cCCccccCCCCCCEEEeecccce---
Q 046340 171 KLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTG-PIPASISNASNLMRLTIAKNGFS--- 246 (715)
Q Consensus 171 ~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~L~~n~~~--- 246 (715)
.+++..+..+... +|+.|++++|.... ..+..+..+++++...+.-..+.
T Consensus 188 ~l~~~~~~~~~~~--------------------------~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 188 PMNFIQPGAFKEI--------------------------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp CCCEECTTTTTTC--------------------------EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred CceecCHHHhccC--------------------------cceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 4444444433333 44555554442211 12223334444444333322111
Q ss_pred ---ecccc-ccCcCC--CcEEEcccC-CCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEc
Q 046340 247 ---GRVPS-LENLYK--LQWVSISHN-HLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIV 319 (715)
Q Consensus 247 ---~~~~~-~~~l~~--L~~L~l~~n-~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l 319 (715)
..... +..+.+ ++.++++.+ .+.. .....+..+++|+.|++++|.+. .+|..+... .|++|++
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l 311 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLD-------DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLEL 311 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEES-------CSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEE
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhh-------hchhhhcCcCcccEEEecCccch-hhhhhhccC--CccEEee
Confidence 11111 222222 344555544 2222 12234566778888888888777 455555555 4888888
Q ss_pred cccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccC--CccccCCCCCCeEeccCCccc
Q 046340 320 GNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEI--PSSIGNLTSLAILAFDENMLE 397 (715)
Q Consensus 320 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~ 397 (715)
++|.+.. .|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+.++++|++|++++|.+.
T Consensus 312 ~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 386 (570)
T 2z63_A 312 VNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386 (570)
T ss_dssp ESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE
T ss_pred ccCcccc-cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc
Confidence 8888873 343 4678888888888887755443 67888888888888886654 567788889999999998888
Q ss_pred ccCCcccccCCCCCEEeCcCcccccccC-ccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCc-cccCh
Q 046340 398 GSIPSSLGKCQNLILLDLSNNNLSGTIP-TEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLS-GEIPN 475 (715)
Q Consensus 398 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~ 475 (715)
+..+. +..+++|+.|++++|.+.+..+ ..+..++.+ +.|++++|.+.+..+..|..+++|++|++++|.+. +..|.
T Consensus 387 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~ 464 (570)
T 2z63_A 387 TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464 (570)
T ss_dssp EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh
Confidence 66554 8888999999999998886555 456677777 78999999998888888999999999999999987 46788
Q ss_pred hhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCC
Q 046340 476 SLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVK 548 (715)
Q Consensus 476 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~ 548 (715)
.+..+++|++|++++|++++..|..|..+++|+.|++++|++++.+++.|..+++|++|++++|++.|.+|..
T Consensus 465 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 8999999999999999999888999999999999999999999998899999999999999999999988854
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-50 Score=445.40 Aligned_cols=497 Identities=19% Similarity=0.209 Sum_probs=345.0
Q ss_pred CCcccceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCc
Q 046340 3 FCQWKGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPD 82 (715)
Q Consensus 3 ~c~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (715)
+|.|.|+ |+. ++++++. +|..+. ++|++|||++|.+++..+..|.++++|++|+|++|++++..|+
T Consensus 3 ~C~~~~~-c~~----------~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC----------TTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC----------CCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4888887 743 4555653 454443 7899999999999988888899999999999999999988888
Q ss_pred cccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccc-cCccccCCCCCCEEEcccCc-ceecCCccccCCC
Q 046340 83 NISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGE-IPSSFGNLSSLEFLSAAANQ-FVGQFPETLSELK 160 (715)
Q Consensus 83 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~ 160 (715)
+|.++++|++|++++|++.+..+..|+++++|++|++++|.+++. .+..|.++++|++|++++|. +..+.+..|.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 999999999999999999988888899999999999999998853 46778999999999999998 4555557889999
Q ss_pred CCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccC--C-ccccCCCCCCE
Q 046340 161 MMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPI--P-ASISNASNLMR 237 (715)
Q Consensus 161 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~l~~~~~L~~ 237 (715)
+|++|++++|.+++..|..+..+++|+.|+++.|.+. .+|..++..+++|+.|++++|.+++.. + .....+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 9999999999999888889999999999999999886 666666667899999999999988642 1 23345788999
Q ss_pred EEeecccceeccc-----cccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccc
Q 046340 238 LTIAKNGFSGRVP-----SLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLST 312 (715)
Q Consensus 238 L~L~~n~~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~ 312 (715)
|++++|.+.+..+ .+..+++|+.+++++|.+..+..... .....+..+++++.|+++++.+..... +.
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~---- 300 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP-SESDVVSELGKVETVTIRRLHIPQFYL--FY---- 300 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC-CTTTCCCCCTTCCEEEEESCBCSCGGG--SC----
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccc-cchhhhhhhcccccccccccccchhhh--cc----
Confidence 9999988865332 24667788888888887665432211 111234556677777777665542110 00
Q ss_pred cCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCC---ccccCCCCCCeE
Q 046340 313 RLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIP---SSIGNLTSLAIL 389 (715)
Q Consensus 313 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L 389 (715)
..+..+...++|+.|++++|.+.......+..+++|++|++++|.+++..+ ..+..+++|++|
T Consensus 301 --------------~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 301 --------------DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp --------------CCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred --------------cchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 001111223344444444444442211222344445555555544443322 123444555555
Q ss_pred eccCCcccccCC--cccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCC
Q 046340 390 AFDENMLEGSIP--SSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISEN 467 (715)
Q Consensus 390 ~l~~n~i~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 467 (715)
++++|++++..+ ..+..+++|++|++++|+++ .+|..+..++.+ +.|++++|+++.. +..+ .++|++|++++|
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N 441 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIRVV-KTCI--PQTLEVLDVSNN 441 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCSCC-CTTS--CTTCSEEECCSS
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCcccc-cchh--cCCceEEECCCC
Confidence 555555543321 23445555555555555555 344444444444 5555555555522 2222 247788888888
Q ss_pred cCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 468 KLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 468 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
++++.. ..+++|++|++++|+++. +|. ...+++|+.|+|++|++++.+|+.|..+++|+.|++++|++.|.+|
T Consensus 442 ~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 442 NLDSFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSCCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred Chhhhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 887542 467888888888888884 444 3568899999999999999988999999999999999999998877
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.1e-51 Score=455.33 Aligned_cols=457 Identities=20% Similarity=0.279 Sum_probs=289.8
Q ss_pred CCCcc---cceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCC------c------cCChhhcCCCCC
Q 046340 2 HFCQW---KGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFR------D------EIPQEIGYLFRL 66 (715)
Q Consensus 2 ~~c~~---~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~~~~~~l~~L 66 (715)
++|.| .||+|... ++|++|+|+++++.|.+|+.+++|++|++|||++|.+. + ..|... +..|
T Consensus 65 ~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l 141 (636)
T 4eco_A 65 ELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKM 141 (636)
T ss_dssp CGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHH
T ss_pred CcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHH
Confidence 57999 99999865 89999999999999999999999999999999999762 1 222222 4455
Q ss_pred cEEecCCCcCcccCCccccCC-------------------CCCCEEEcc--CCcCccCccccccCCCCCCEEEeeccccc
Q 046340 67 QILALHNNTFGGQIPDNISHC-------------------VNLESLGLG--VNELVGKVPGKLGSLSKLWILSVHYNSLS 125 (715)
Q Consensus 67 ~~L~Ls~n~i~~~~~~~~~~l-------------------~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 125 (715)
+ +++++|.+.+..+..+..+ ..++.+.+. +|++++ +|..|+++++|++|+|++|.++
T Consensus 142 ~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~ 219 (636)
T 4eco_A 142 R-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219 (636)
T ss_dssp H-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCC
T ss_pred H-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccc
Confidence 5 6777776666555554411 112222221 355555 5666666666666666666666
Q ss_pred cc-----------------cCcccc--CCCCCCEEEcccCcceecCCccccCCCCCCEEEeeccc-Ccc-cCCccccCC-
Q 046340 126 GE-----------------IPSSFG--NLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENK-LSG-EIPFSIYNL- 183 (715)
Q Consensus 126 ~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-i~~-~~~~~l~~l- 183 (715)
+. +|..+. ++++|++|++++|.+.+..|..|.++++|++|++++|. +++ .+|..++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~ 299 (636)
T 4eco_A 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299 (636)
T ss_dssp GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhh
Confidence 53 555555 66666666666666655556666666666666666665 555 455555444
Q ss_pred -----CCCcEEEccCCccceecCc--chhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcC
Q 046340 184 -----SSLTHFYFPFNQLQGSLPS--DLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLY 256 (715)
Q Consensus 184 -----~~L~~L~l~~n~i~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~ 256 (715)
++|+.|++++|+++ .+|. .+. .+++|+.|++++|.+++.+| .+..+++|++|++++|.+......+..++
T Consensus 300 ~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 376 (636)
T 4eco_A 300 DAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFT 376 (636)
T ss_dssp HSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEEC
T ss_pred ccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhc
Confidence 55666666666555 5554 333 55556666666665554455 55555555555555555553333344454
Q ss_pred C-CcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhcc-ccCcEEEccccceeecCCcccc-
Q 046340 257 K-LQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLS-TRLRKLIVGNNQLFGNIPSGLR- 333 (715)
Q Consensus 257 ~-L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~- 333 (715)
+ |++|++++|.++. +|..+.... .+|+.|++++|.+++..|..|.
T Consensus 377 ~~L~~L~Ls~N~l~~--------------------------------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 377 EQVENLSFAHNKLKY--------------------------------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp TTCCEEECCSSCCSS--------------------------------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred ccCcEEEccCCcCcc--------------------------------cchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 4 5555555554443 333332221 1355555555555555555555
Q ss_pred ------CCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCC-------CCCCeEeccCCcccccC
Q 046340 334 ------NLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNL-------TSLAILAFDENMLEGSI 400 (715)
Q Consensus 334 ------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-------~~L~~L~l~~n~i~~~~ 400 (715)
.+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+... ++|++|++++|.++ .+
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-cc
Confidence 56677777777777775555556667777777777777764444444433 37888888888888 55
Q ss_pred Ccccc--cCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhh
Q 046340 401 PSSLG--KCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLG 478 (715)
Q Consensus 401 ~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 478 (715)
|..+. .+++|+.|++++|++++ +|..+..++.+ +.|++++|+ ++++|++.+..|..+.
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L-~~L~Ls~N~------------------~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL-KGFGIRNQR------------------DAQGNRTLREWPEGIT 563 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC-CEEECCSCB------------------CTTCCBCCCCCCTTGG
T ss_pred ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC-CEEECCCCc------------------ccccCcccccChHHHh
Confidence 66665 78888888888888875 67666666666 667776654 4566777777777777
Q ss_pred cCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCC
Q 046340 479 SCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIP 522 (715)
Q Consensus 479 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 522 (715)
.+++|++|++++|++. .+|..+. ++|+.|++++|++..+..
T Consensus 564 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 564 LCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp GCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 7777777777777774 4555554 678888888887765543
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8e-49 Score=443.27 Aligned_cols=527 Identities=23% Similarity=0.186 Sum_probs=384.1
Q ss_pred CcccceeeCCC--CCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCC
Q 046340 4 CQWKGVTCSPR--HQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIP 81 (715)
Q Consensus 4 c~~~~~~~~~~--~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (715)
|+.++++.+|. +..++.|+|++|.|++..+.+|.++++|++|||++|+|+++.+++|.++++|++|+|++|++++..+
T Consensus 38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 33334444443 3577888888888887777778888888888888888877777778888888888888888877667
Q ss_pred ccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccc-cCccccCCCCCCEEEcccCcceecCCccccCCC
Q 046340 82 DNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGE-IPSSFGNLSSLEFLSAAANQFVGQFPETLSELK 160 (715)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 160 (715)
..|.++++|++|++++|+++++.+.+|+++++|++|++++|.++.. .|..+..+++|++|++++|.++++.+..|..+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 7778888888888888888777777788888888888888877643 456677778888888888888777777665444
Q ss_pred CC----CEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccc------cccCCcccc
Q 046340 161 MM----RYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQF------TGPIPASIS 230 (715)
Q Consensus 161 ~L----~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~l~ 230 (715)
++ ..++++.|.+....+..+.. ..++.+++..|.....++...+..++.++...+..+.. .......+.
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 33 35777777777655544333 34566777776554344444444666666666544322 222233444
Q ss_pred CCCCCCEEEeecccce----eccccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChh
Q 046340 231 NASNLMRLTIAKNGFS----GRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEA 306 (715)
Q Consensus 231 ~~~~L~~L~L~~n~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~ 306 (715)
....+...++..+... +....+....+++.+.+..+.+..+ ..+.....++.|++++|.+....+..
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~~ 347 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV---------KDFSYNFGWQHLELVNCKFGQFPTLK 347 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC---------GGGGSCCCCSEEEEESCEESSCCCCB
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc---------cccccchhhhhhhcccccccCcCccc
Confidence 4555555555544322 2222356667788888777765432 23455678888898888877554432
Q ss_pred HhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeee--ecCccccCCCCccEEEccCCcccccCCccccCCC
Q 046340 307 VGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTG--QIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLT 384 (715)
Q Consensus 307 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 384 (715)
+ ..++.+++..|.+... ..+..+++|+.|++++|.+.. ..+..+..+.+|+++++..+.+... +..+..++
T Consensus 348 ---l-~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~ 420 (635)
T 4g8a_A 348 ---L-KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLE 420 (635)
T ss_dssp ---C-TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCT
T ss_pred ---c-hhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccc
Confidence 2 3488888888877643 234578899999999998753 4566677888999999998887544 45677889
Q ss_pred CCCeEeccCCcccccCC-cccccCCCCCEEeCcCcccccccCccccccccccceEEccCCccc-ccCCcCCcCCCCCCce
Q 046340 385 SLAILAFDENMLEGSIP-SSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN-GSLPPNFGILKNLGGI 462 (715)
Q Consensus 385 ~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~-~~~~~~~~~l~~L~~L 462 (715)
+|+.+++..+......+ ..|..+++++.++++.|.+....+..+..++.+ +.|++++|.+. +..|..|..+++|++|
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEE
Confidence 99999998887765544 457888999999999999987777777777777 78999998754 4567888999999999
Q ss_pred eccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCC-CCCCEEeCCCCcc
Q 046340 463 DISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENF-FFLQNLNLSSNHF 541 (715)
Q Consensus 463 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~L~~L~ls~N~l 541 (715)
+|++|++++..|..|.++++|++|+|++|+++++.+..|.++++|+.|+|++|++++..|+.|..+ ++|++|++++|+|
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 999999998888899999999999999999998888889999999999999999999989888887 5799999999999
Q ss_pred cccCCCC
Q 046340 542 EGEVPVK 548 (715)
Q Consensus 542 ~~~~~~~ 548 (715)
.|.|...
T Consensus 580 ~C~C~~~ 586 (635)
T 4g8a_A 580 ACTCEHQ 586 (635)
T ss_dssp CCSGGGH
T ss_pred cccCCcH
Confidence 9887643
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-48 Score=432.58 Aligned_cols=511 Identities=22% Similarity=0.213 Sum_probs=374.1
Q ss_pred EEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcC
Q 046340 21 LRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNEL 100 (715)
Q Consensus 21 l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 100 (715)
++-++.++.. +|..+. +++++|||++|.++++.+.+|.++++|++|+|++|++++..+.+|+++++|++|++++|.+
T Consensus 12 ~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 3444444443 333332 4677777777777766666777777777777777777766666677777777777777776
Q ss_pred ccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceec-CCccccCCCCCCEEEeecccCcccCCcc
Q 046340 101 VGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQ-FPETLSELKMMRYISFGENKLSGEIPFS 179 (715)
Q Consensus 101 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 179 (715)
.+..+.+|.++++|++|++++|++++..+..|.++++|++|++++|.+.+. .|..|.++++|++|++++|.+++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 666666666666677777666666644444466666666666666665542 3455555555555555555555444333
Q ss_pred ccCCCCCcEEEccCCccceecCcchhcCCCC-CCEEEeeCccccccCCccccCCCCCCEEEeecccceec-cc-cccCcC
Q 046340 180 IYNLSSLTHFYFPFNQLQGSLPSDLGFTLPN-LEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGR-VP-SLENLY 256 (715)
Q Consensus 180 l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~-~~-~~~~l~ 256 (715)
+..+++| +. .+.+++++|.+++..+..+... +|+.|++++|..... .+ .+..++
T Consensus 169 ~~~l~~L----------------------~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~ 225 (570)
T 2z63_A 169 LRVLHQM----------------------PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA 225 (570)
T ss_dssp GHHHHTC----------------------TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTT
T ss_pred ccchhcc----------------------chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCcc
Confidence 3333333 10 0567777777776666666655 799999998854321 11 266677
Q ss_pred CCcEEEcccCCCCCCCCCCccccccccccCC--CCCEEEccCC-cccccCChhHhhccccCcEEEccccceeecCCcccc
Q 046340 257 KLQWVSISHNHLGNYGEKDNLEFVNSLVNAS--RLELLEISDN-NFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLR 333 (715)
Q Consensus 257 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~--~L~~L~ls~n-~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 333 (715)
.++...+....+........+. ...+..++ .++.++++++ .+.+..+..+..++. |+.|++++|.+. .+|..+.
T Consensus 226 ~l~~~~l~~~~~~~~~~l~~~~-~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~-~l~~~~~ 302 (570)
T 2z63_A 226 GLEVHRLVLGEFRNEGNLEKFD-KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIE-RVKDFSY 302 (570)
T ss_dssp TCEEEEEEEEECCCCSSCEECC-TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT-CSEEEEESCEEC-SCCBCCS
T ss_pred ccceeeeccccccCchhhhhcc-hhhhccccccchhhhhhhcchhhhhhchhhhcCcCc-ccEEEecCccch-hhhhhhc
Confidence 7777666544332211100000 01111222 3677888887 677778888877755 999999999998 4777788
Q ss_pred CCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccC--CcccccCCCCC
Q 046340 334 NLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSI--PSSLGKCQNLI 411 (715)
Q Consensus 334 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~L~ 411 (715)
.+ +|+.|++++|.+. ..|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|+
T Consensus 303 ~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 303 NF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp CC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred cC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 88 9999999999998 3443 5789999999999998766654 78999999999999998664 67788999999
Q ss_pred EEeCcCcccccccCccccccccccceEEccCCcccccCC-cCCcCCCCCCceeccCCcCccccChhhhcCcccccccccC
Q 046340 412 LLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLP-PNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKG 490 (715)
Q Consensus 412 ~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 490 (715)
+|++++|.+.+. +..+..++.+ +.|++++|.+.+..+ ..|..+++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 377 ~L~l~~n~l~~~-~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 454 (570)
T 2z63_A 377 YLDLSFNGVITM-SSNFLGLEQL-EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454 (570)
T ss_dssp EEECCSCSEEEE-EEEEETCTTC-CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred EEECCCCccccc-cccccccCCC-CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcC
Confidence 999999999854 4448888888 899999999998766 5789999999999999999998999999999999999999
Q ss_pred Cccc-ccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCC-CCCCCCCccccCCCCCCCCc
Q 046340 491 NFFQ-GNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVK-GVFSNSSAISLDGNDNLCGG 568 (715)
Q Consensus 491 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~-~~~~~~~~~~~~~n~~~c~~ 568 (715)
|.++ +.+|..|..+++|+.|++++|++++..|..|..+++|++|++++|.+++..+.. ..+++++.+++.+|++.|..
T Consensus 455 n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 9998 568899999999999999999999999999999999999999999999877643 45678899999999999863
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-48 Score=431.09 Aligned_cols=480 Identities=20% Similarity=0.190 Sum_probs=368.2
Q ss_pred CcccceeeCCC--CCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCC
Q 046340 4 CQWKGVTCSPR--HQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIP 81 (715)
Q Consensus 4 c~~~~~~~~~~--~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (715)
|++.+++..|. ...++.|++++|.+++..+..|.++++|++|+|++|.+++..++.|+++++|++|+|++|++++..+
T Consensus 12 ~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 12 GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp CTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 56778888875 3799999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccccCCCCCCEEEccCCcCccC-ccccccCCCCCCEEEeeccc-cccccCccccCCCCCCEEEcccCcceecCCccccCC
Q 046340 82 DNISHCVNLESLGLGVNELVGK-VPGKLGSLSKLWILSVHYNS-LSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSEL 159 (715)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 159 (715)
..|+++++|++|++++|.+.+. .|..|.++++|++|++++|. +....+..|.++++|++|++++|.+.+..+..+..+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 8899999999999999999864 46789999999999999998 454444689999999999999999999999999999
Q ss_pred CCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceec--CcchhcCCCCCCEEEeeCccccccCC----ccccCCC
Q 046340 160 KMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSL--PSDLGFTLPNLEVLNVGGNQFTGPIP----ASISNAS 233 (715)
Q Consensus 160 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~~~ 233 (715)
++|++|++++|.+.......+..+++|+.|++++|++++.. +......+++|+.|++++|.+++..+ ..+..++
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 99999999999987554445567999999999999998432 33344467899999999999876433 3456789
Q ss_pred CCCEEEeecccceecc-------ccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChh
Q 046340 234 NLMRLTIAKNGFSGRV-------PSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEA 306 (715)
Q Consensus 234 ~L~~L~L~~n~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~ 306 (715)
+|+.+++++|.+.+.. ..+..+++++.+++.++.+....... ..+..
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~--------------------------~l~~~ 305 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY--------------------------DLSTV 305 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC--------------------------CCCHH
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcc--------------------------cchhh
Confidence 9999999999987642 12567889999999988765421110 01111
Q ss_pred HhhccccCcEEEccccceeecCCccc-cCCCCCCEEEcCCceeeeecC---ccccCCCCccEEEccCCcccccCC--ccc
Q 046340 307 VGNLSTRLRKLIVGNNQLFGNIPSGL-RNLVNLELLHLGGNQFTGQIP---GSIGDLHKLQWLMLPANEFWGEIP--SSI 380 (715)
Q Consensus 307 ~~~~~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n~i~~~~~--~~~ 380 (715)
+ ....+|+.|++++|.+.. +|..+ .++++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+ ..+
T Consensus 306 ~-~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 306 Y-SLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp H-HHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred h-hhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence 1 112235566666665543 33332 456666666666666654432 235566666666666666654432 346
Q ss_pred cCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCC
Q 046340 381 GNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLG 460 (715)
Q Consensus 381 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~ 460 (715)
..+++|++|++++|+++ .+|..+..+++|++|++++|++. .++..+. +.+ +.|++++|++++. +..+++|+
T Consensus 384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L-~~L~Ls~N~l~~~----~~~l~~L~ 454 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTL-EVLDVSNNNLDSF----SLFLPRLQ 454 (549)
T ss_dssp GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTC-SEEECCSSCCSCC----CCCCTTCC
T ss_pred hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCc-eEEECCCCChhhh----cccCChhc
Confidence 66777777777777776 45556667777777777777776 3333321 344 7788888888754 24678999
Q ss_pred ceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCC
Q 046340 461 GIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIP 522 (715)
Q Consensus 461 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 522 (715)
+|++++|+++ .+|. ...+++|++|++++|++++.+++.|..+++|+.|++++|++.+..|
T Consensus 455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999998 4454 4678999999999999998888889999999999999999977654
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-48 Score=438.13 Aligned_cols=472 Identities=17% Similarity=0.186 Sum_probs=267.1
Q ss_pred cceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeC-CCCCCCccCChhhcCC-CCCc-----EE---------e
Q 046340 7 KGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDL-KNNSFRDEIPQEIGYL-FRLQ-----IL---------A 70 (715)
Q Consensus 7 ~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l-~~L~-----~L---------~ 70 (715)
.||.|.. .++|+.|+|+++++.|.+|+.|++|++|++||| ++|.+.+..+..-... ..+. .+ .
T Consensus 315 ~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~ 393 (876)
T 4ecn_A 315 PGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393 (876)
T ss_dssp TTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred CceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence 9999986 489999999999999999999999999999999 8887765422110000 0000 00 0
Q ss_pred c-CCCcCccc-----------CCccccCCCCCCEEEccC--CcCccCccccccCCCCCCEEEeecccccc----------
Q 046340 71 L-HNNTFGGQ-----------IPDNISHCVNLESLGLGV--NELVGKVPGKLGSLSKLWILSVHYNSLSG---------- 126 (715)
Q Consensus 71 L-s~n~i~~~-----------~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------- 126 (715)
. ....+... .+........++.+.+.. |++++ +|..|+++++|+.|+|++|++++
T Consensus 394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472 (876)
T ss_dssp CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccc
Confidence 0 00000000 000001112222222222 44444 44455555555555555555554
Q ss_pred -------ccCcccc--CCCCCCEEEcccCcceecCCccccCCCCCCEEEeeccc-Ccc-cCCccccCCC-------CCcE
Q 046340 127 -------EIPSSFG--NLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENK-LSG-EIPFSIYNLS-------SLTH 188 (715)
Q Consensus 127 -------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-i~~-~~~~~l~~l~-------~L~~ 188 (715)
.+|..+. ++++|++|++++|.+.+..|..|..+++|++|++++|+ +++ .+|..+..++ +|+.
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 2555544 56666666666666555555556666666666666665 554 4444444333 6666
Q ss_pred EEccCCccceecCc--chhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCC-CcEEEccc
Q 046340 189 FYFPFNQLQGSLPS--DLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYK-LQWVSISH 265 (715)
Q Consensus 189 L~l~~n~i~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~-L~~L~l~~ 265 (715)
|++++|+++ .+|. .+. .+++|+.|++++|.++ .+| .+..+++|+.|++++|.+......+..+++ |+.|++++
T Consensus 553 L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp EECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred EEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 666666665 5555 333 5666666666666665 444 566666666666666666633334666666 66666666
Q ss_pred CCCCCCCCCCccccccccccC--CCCCEEEccCCcccccCChhH---hhc-cccCcEEEccccceeecCCccccCCCCCC
Q 046340 266 NHLGNYGEKDNLEFVNSLVNA--SRLELLEISDNNFGGMLPEAV---GNL-STRLRKLIVGNNQLFGNIPSGLRNLVNLE 339 (715)
Q Consensus 266 n~l~~~~~~~~~~~~~~l~~~--~~L~~L~ls~n~i~~~~~~~~---~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 339 (715)
|.++.++. .+... ++|+.|++++|.+.+.+|... ..+ ..+|+.|++++|.++...+..+..+++|+
T Consensus 629 N~L~~lp~--------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 629 NKLKYIPN--------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700 (876)
T ss_dssp SCCCSCCS--------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred CCCCcCch--------hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence 66654321 22222 336777777777665544221 111 12477777777777744334445777788
Q ss_pred EEEcCCceeeeecCccccC-------CCCccEEEccCCcccccCCcccc--CCCCCCeEeccCCcccccCCcccccCCCC
Q 046340 340 LLHLGGNQFTGQIPGSIGD-------LHKLQWLMLPANEFWGEIPSSIG--NLTSLAILAFDENMLEGSIPSSLGKCQNL 410 (715)
Q Consensus 340 ~L~L~~n~i~~~~~~~~~~-------l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~L 410 (715)
.|+|++|.++.+.+..+.. +++|++|+|++|.++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|
T Consensus 701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 8888888777444433332 237888888888886 4555665 78888888888888886 56677788888
Q ss_pred CEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccC
Q 046340 411 ILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKG 490 (715)
Q Consensus 411 ~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 490 (715)
+.|+|++|+ ++++|++.+..|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|++
T Consensus 779 ~~L~Ls~N~-------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~ 836 (876)
T 4ecn_A 779 KAFGIRHQR-------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIAD 836 (876)
T ss_dssp CEEECCCCB-------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCS
T ss_pred CEEECCCCC-------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCC
Confidence 888887754 2344444444444455555555555555555 23333332 3455555555
Q ss_pred CcccccCcccCCCCCCCCEEeCCCCc
Q 046340 491 NFFQGNIPSSFSSLRGMQNLDLSRNN 516 (715)
Q Consensus 491 n~l~~~~~~~~~~l~~L~~L~L~~N~ 516 (715)
|++..+.+..|.....+..+.|.+|+
T Consensus 837 N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 837 NPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp CTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred CCCCccChHHccccccchheeecCCC
Confidence 55544444444333333334444443
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2e-46 Score=423.69 Aligned_cols=528 Identities=20% Similarity=0.160 Sum_probs=425.5
Q ss_pred EEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcC
Q 046340 21 LRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNEL 100 (715)
Q Consensus 21 l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 100 (715)
.+=++.+++. +|..+. +.+++|||++|.|+++.+.+|.++++|++|+|++|+|+++.+++|.++++|++|+|++|++
T Consensus 36 ~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 3444455653 455442 4799999999999999899999999999999999999988899999999999999999999
Q ss_pred ccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceec-CCccccCCCCCCEEEeecccCcccCCcc
Q 046340 101 VGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQ-FPETLSELKMMRYISFGENKLSGEIPFS 179 (715)
Q Consensus 101 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 179 (715)
++..+.+|.++++|++|+|++|++++..+..|.++++|++|++++|.+.+. .|..+..+++|++|++++|++++..+..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 988889999999999999999999977777899999999999999999865 4677899999999999999999988888
Q ss_pred ccCCCCCc----EEEccCCccceecCcchhcCCCCCCEEEeeCccccc-cCCccccCCCCCCEEEeeccccee------c
Q 046340 180 IYNLSSLT----HFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTG-PIPASISNASNLMRLTIAKNGFSG------R 248 (715)
Q Consensus 180 l~~l~~L~----~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~L~~n~~~~------~ 248 (715)
+..+.+++ .++++.|.+. .++...+ ....++.+++.+|.... ..+..+..+..++...+..+.... .
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 87765544 7889999998 5555554 45567888888886542 334456777888777665443221 1
Q ss_pred c-ccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeec
Q 046340 249 V-PSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGN 327 (715)
Q Consensus 249 ~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 327 (715)
. ..+.....+...++..+....... .....+....+++.+.+.++.+....+ +... ..++.|++.+|.+...
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~-~~L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLD----GIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN-FGWQHLELVNCKFGQF 343 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEE----ECTTTTGGGTTCSEEEEESCEEEECGG--GGSC-CCCSEEEEESCEESSC
T ss_pred cccccccccchhhhhhhhhhhccccc----chhhhhhhhcccccccccccccccccc--cccc-hhhhhhhcccccccCc
Confidence 1 124555666666665544322111 122345567789999999988775433 2222 3599999999998765
Q ss_pred CCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccc--cCCccccCCCCCCeEeccCCcccccCCcccc
Q 046340 328 IPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWG--EIPSSIGNLTSLAILAFDENMLEGSIPSSLG 405 (715)
Q Consensus 328 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 405 (715)
.+ ..+..|+.+++..|.+... ..+..+++|+.|++++|.+.. ..+..+..+.+|+.+++..|.+.. .+..+.
T Consensus 344 ~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~ 417 (635)
T 4g8a_A 344 PT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFL 417 (635)
T ss_dssp CC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCT
T ss_pred Cc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccc
Confidence 44 3567899999999987643 235578999999999998854 445567788999999999999874 455788
Q ss_pred cCCCCCEEeCcCcccccccC-ccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCc-cccChhhhcCccc
Q 046340 406 KCQNLILLDLSNNNLSGTIP-TEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLS-GEIPNSLGSCIRL 483 (715)
Q Consensus 406 ~~~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L 483 (715)
.+++|+.++++.|......+ ..+..+..+ +.++++.|.+.+..+..+..++.|+.|++++|.+. ...|..|..+++|
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ccccccchhhhhcccccccccccccccccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 89999999999998775544 345666667 89999999999999999999999999999999854 4678899999999
Q ss_pred ccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCC--CCCCCCCccccCC
Q 046340 484 EELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVK--GVFSNSSAISLDG 561 (715)
Q Consensus 484 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~--~~~~~~~~~~~~~ 561 (715)
++|+|++|+++++.|..|.++++|++|+|++|+++++.|..|.++++|++|++++|++++..|.. ....+++.+++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999887743 3346799999999
Q ss_pred CCCCCC
Q 046340 562 NDNLCG 567 (715)
Q Consensus 562 n~~~c~ 567 (715)
|||.|+
T Consensus 577 Np~~C~ 582 (635)
T 4g8a_A 577 NDFACT 582 (635)
T ss_dssp CCBCCS
T ss_pred CCCccc
Confidence 999996
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=421.34 Aligned_cols=459 Identities=20% Similarity=0.232 Sum_probs=325.6
Q ss_pred EEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCC
Q 046340 19 TGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVN 98 (715)
Q Consensus 19 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 98 (715)
+.+++++|+++. +|..+. ++|++|||++|.+++..++.|.++++|++|+|++|++++..|+.|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578899998884 566555 88999999999998888888999999999999999998888888999999999999999
Q ss_pred cCccCccccccCCCCCCEEEeecccccc-ccCccccCCCCCCEEEcccCcceecCCccccCCCCC--CEEEeecccC--c
Q 046340 99 ELVGKVPGKLGSLSKLWILSVHYNSLSG-EIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMM--RYISFGENKL--S 173 (715)
Q Consensus 99 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~L~~n~i--~ 173 (715)
++++ .|.. .+++|++|++++|++++ ..|..|.++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 8874 4443 78889999999998886 357788888999999998888875 356667777 8888888888 6
Q ss_pred ccCCccccCCC-CCcEEEccCCccceecCcchhcCCCCCCEEEeeCcc-------ccccCCccccCCCCCCEEEeecccc
Q 046340 174 GEIPFSIYNLS-SLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQ-------FTGPIPASISNASNLMRLTIAKNGF 245 (715)
Q Consensus 174 ~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~~~~L~~L~L~~n~~ 245 (715)
+..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|. +.+.++ .+..+++|++|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 66666666655 233556666666655555554455666666666654 222222 333344444444433333
Q ss_pred eeccccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhh--ccccCcEEEccccc
Q 046340 246 SGRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGN--LSTRLRKLIVGNNQ 323 (715)
Q Consensus 246 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~--~~~~L~~L~l~~n~ 323 (715)
.+ ..+..+.. ...+|++|++++|.
T Consensus 233 ~~------------------------------------------------------~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 233 TW------------------------------------------------------NSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp EH------------------------------------------------------HHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred CH------------------------------------------------------HHHHHHHHHhhhCcccEEEeeccc
Confidence 21 11111100 01236666666666
Q ss_pred eeecCCccc-----cCCCCCCEEEcCCceeeeecCccccCC---CCccEEEccCCcccccCCccccCCCCCCeEeccCCc
Q 046340 324 LFGNIPSGL-----RNLVNLELLHLGGNQFTGQIPGSIGDL---HKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENM 395 (715)
Q Consensus 324 i~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 395 (715)
+++..|..+ .++++|+.+++++|.+ ......+..+ .+|+.|++++|.+.... .+..+++|++|++++|.
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNL 335 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred ccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCc
Confidence 665555555 6677777777777776 2222344333 56777777777664332 12567777777777777
Q ss_pred ccccCCcccccCCCCCEEeCcCccccc--ccCccccccccccceEEccCCcccccCC-cCCcCCCCCCceeccCCcCccc
Q 046340 396 LEGSIPSSLGKCQNLILLDLSNNNLSG--TIPTEVIGLSSLSIYLDLSQNQLNGSLP-PNFGILKNLGGIDISENKLSGE 472 (715)
Q Consensus 396 i~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~l~~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~ 472 (715)
+.+..|..+..+++|++|++++|++.+ .+|..+..++.+ +.|++++|.+++..| ..+..+++|++|++++|++++.
T Consensus 336 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 777677777777788888888887774 344556667777 678888888876333 4577888999999999998876
Q ss_pred cChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCC
Q 046340 473 IPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVK 548 (715)
Q Consensus 473 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~ 548 (715)
.|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++.+++..|..+++|++|++++|++.|.++..
T Consensus 415 ~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp GGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred hhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCch
Confidence 666554 78999999999998 56666668999999999999999766666899999999999999999877643
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.9e-47 Score=423.60 Aligned_cols=444 Identities=18% Similarity=0.217 Sum_probs=321.3
Q ss_pred CCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCc------c------cCCccccCCCCCCEEEccCCcCccCcccc
Q 046340 40 SFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFG------G------QIPDNISHCVNLESLGLGVNELVGKVPGK 107 (715)
Q Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 107 (715)
.+++.|+|++|.+++.+|.+|+++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 58899999999999999999999999999999999762 1 122221 33455 677777666655555
Q ss_pred ccCC-------------------CCCCEEEee--ccccccccCccccCCCCCCEEEcccCcceec---------------
Q 046340 108 LGSL-------------------SKLWILSVH--YNSLSGEIPSSFGNLSSLEFLSAAANQFVGQ--------------- 151 (715)
Q Consensus 108 ~~~l-------------------~~L~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------- 151 (715)
+..+ ..++.+.+. .|++++ +|..|.++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 4411 111111121 455665 566666666666666666666653
Q ss_pred --CCcccc--CCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCc-cce-ecCcchhc-----CCCCCCEEEeeCcc
Q 046340 152 --FPETLS--ELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQ-LQG-SLPSDLGF-----TLPNLEVLNVGGNQ 220 (715)
Q Consensus 152 --~~~~l~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-i~~-~~~~~~~~-----~l~~L~~L~L~~n~ 220 (715)
.|..+. .+++|++|++++|.+.+.+|..++++++|+.|++++|+ +++ .+|..++. .+++|+.|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 555555 66666666666666666666666666666666666665 555 45555441 12555555555555
Q ss_pred ccccCCc--cccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCc
Q 046340 221 FTGPIPA--SISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNN 298 (715)
Q Consensus 221 l~~~~~~--~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~ 298 (715)
++ .+|. .+.++++|++|++++|.+.+..+. +..+++|+.|++++|+
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~-------------------------------~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLPA-------------------------------FGSEIKLASLNLAYNQ 364 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECCC-------------------------------CEEEEEESEEECCSSE
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchhh-------------------------------hCCCCCCCEEECCCCc
Confidence 55 4444 555555555555555555433223 3445566677777777
Q ss_pred ccccCChhHhhccccCcEEEccccceeecCCccccCCC--CCCEEEcCCceeeeecCcccc-------CCCCccEEEccC
Q 046340 299 FGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLV--NLELLHLGGNQFTGQIPGSIG-------DLHKLQWLMLPA 369 (715)
Q Consensus 299 i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~L~~ 369 (715)
++ .+|..+..++..|++|++++|.++ .+|..+..++ +|+.|++++|.+++..|..+. .+++|++|++++
T Consensus 365 l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 365 IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 76 566667776544999999999998 6777777655 899999999999988888888 888999999999
Q ss_pred CcccccCCccccCCCCCCeEeccCCcccccCCcccccCC-------CCCEEeCcCcccccccCcccc--ccccccceEEc
Q 046340 370 NEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQ-------NLILLDLSNNNLSGTIPTEVI--GLSSLSIYLDL 440 (715)
Q Consensus 370 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-------~L~~L~L~~n~l~~~~~~~~~--~~~~l~~~L~L 440 (715)
|.++...+..+..+++|++|++++|+++...+..+.... +|+.|++++|+++ .+|..+. .++.+ +.|+|
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-~~L~L 520 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL-VGIDL 520 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC-CEEEC
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc-CEEEC
Confidence 999876666778899999999999999965555555443 9999999999999 6787776 77777 78888
Q ss_pred cCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCccccc
Q 046340 441 SQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGR 520 (715)
Q Consensus 441 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 520 (715)
++|++++ +|..+..+++|+.|++++|+ ++++|++.+.+|..|..+++|+.|+|++|++. .
T Consensus 521 s~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ 580 (636)
T 4eco_A 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-K 580 (636)
T ss_dssp CSSCCSS-CCCGGGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-B
T ss_pred CCCCCCC-cChhhhcCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcCC-c
Confidence 8888886 67777788888888888877 56789999999999999999999999999995 5
Q ss_pred CCccccCCCCCCEEeCCCCcccccC
Q 046340 521 IPKYFENFFFLQNLNLSSNHFEGEV 545 (715)
Q Consensus 521 ~~~~~~~~~~L~~L~ls~N~l~~~~ 545 (715)
+|..+. ++|+.|++++|++.+..
T Consensus 581 ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 581 VNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cCHhHh--CcCCEEECcCCCCcccc
Confidence 565555 79999999999998644
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-45 Score=416.22 Aligned_cols=468 Identities=17% Similarity=0.182 Sum_probs=373.7
Q ss_pred CCCCEEeCCCCCCCccCChhhcCCCCCcEEec-CCCcCcccCCccccCC-CCCCE-----EEc----------cCCcCcc
Q 046340 40 SFLRVLDLKNNSFRDEIPQEIGYLFRLQILAL-HNNTFGGQIPDNISHC-VNLES-----LGL----------GVNELVG 102 (715)
Q Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l-~~L~~-----L~L----------~~n~l~~ 102 (715)
.+++.|+|++|.+++.+|+.|+++++|++|+| ++|.+.+..+-..... ..+.. +.. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 8998876633221111 00000 000 0000100
Q ss_pred Cc-----------cccccCCCCCCEEEeec--cccccccCccccCCCCCCEEEcccCccee-----------------cC
Q 046340 103 KV-----------PGKLGSLSKLWILSVHY--NSLSGEIPSSFGNLSSLEFLSAAANQFVG-----------------QF 152 (715)
Q Consensus 103 ~~-----------~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------~~ 152 (715)
.. +........++.+.+.. |++++ +|..|.++++|++|++++|.+++ ..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00 11112233444444444 88887 88999999999999999999998 37
Q ss_pred Ccccc--CCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCc-cce-ecCcchh------cCCCCCCEEEeeCcccc
Q 046340 153 PETLS--ELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQ-LQG-SLPSDLG------FTLPNLEVLNVGGNQFT 222 (715)
Q Consensus 153 ~~~l~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-i~~-~~~~~~~------~~l~~L~~L~L~~n~l~ 222 (715)
|..++ .+++|++|+|++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+. ..+++|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 77776 99999999999999999999999999999999999998 887 7887654 24569999999999999
Q ss_pred ccCCc--cccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCC-CCEEEccCCcc
Q 046340 223 GPIPA--SISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASR-LELLEISDNNF 299 (715)
Q Consensus 223 ~~~~~--~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~-L~~L~ls~n~i 299 (715)
.+|. .+.++++|++|++++|.+. ..|.+..+++|+.|++++|.++.++ ..+..+++ |+.|++++|.+
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp--------~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIP--------EDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCC--------TTSCEECTTCCEEECCSSCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccch--------HHHhhccccCCEEECcCCCC
Confidence 7777 8999999999999999999 4458999999999999999987543 34677888 99999999999
Q ss_pred cccCChhHhhcc-ccCcEEEccccceeecCCccc---c--CCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCccc
Q 046340 300 GGMLPEAVGNLS-TRLRKLIVGNNQLFGNIPSGL---R--NLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFW 373 (715)
Q Consensus 300 ~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~---~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 373 (715)
. .+|..+.... .+|+.|++++|.+.+.+|... . .+++|+.|+|++|.++...+..+..+++|++|+|++|.+.
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 8 6676665543 249999999999987665322 2 3458999999999999555555678999999999999998
Q ss_pred ccCCccccC-------CCCCCeEeccCCcccccCCcccc--cCCCCCEEeCcCcccccccCccccccccccceEEccCCc
Q 046340 374 GEIPSSIGN-------LTSLAILAFDENMLEGSIPSSLG--KCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 444 (715)
Q Consensus 374 ~~~~~~~~~-------l~~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~ 444 (715)
...+..+.. +++|+.|++++|+++ .+|..+. .+++|+.|+|++|++.+ +|..+..++.+ +.|+|++|+
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L-~~L~Ls~N~ 787 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL-KAFGIRHQR 787 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC-CEEECCCCB
T ss_pred ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC-CEEECCCCC
Confidence 554444443 349999999999999 6677776 89999999999999996 68788888877 788888887
Q ss_pred ccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCcc
Q 046340 445 LNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKY 524 (715)
Q Consensus 445 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 524 (715)
++++|++.+..|..+.++++|++|+|++|++. .+|..+. ++|+.|+|++|++..+.+..
T Consensus 788 ------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 788 ------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp ------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGG
T ss_pred ------------------CcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHH
Confidence 67889999999999999999999999999994 6677665 69999999999999888888
Q ss_pred ccCCCCCCEEeCCCCcccc
Q 046340 525 FENFFFLQNLNLSSNHFEG 543 (715)
Q Consensus 525 ~~~~~~L~~L~ls~N~l~~ 543 (715)
|.....+..+.|.+|++..
T Consensus 847 ~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 847 VCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp GHHHHHTTCCEEECCTTSE
T ss_pred ccccccchheeecCCCccc
Confidence 8776677778888887764
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-44 Score=400.74 Aligned_cols=466 Identities=20% Similarity=0.200 Sum_probs=293.0
Q ss_pred eEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccC
Q 046340 18 VTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGV 97 (715)
Q Consensus 18 v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 97 (715)
.+.++++++++++ +|..+. ++|++|+|++|.|++..++.|.++++|++|+|++|++++..|++|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3677777777775 444443 6777777777777776667777777777777777777777777777777777777777
Q ss_pred CcCccCccccccCCCCCCEEEeeccccccc-cCccccCCCCCCEEEcccCcceecCCccccCCCCC--CEEEeecccC--
Q 046340 98 NELVGKVPGKLGSLSKLWILSVHYNSLSGE-IPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMM--RYISFGENKL-- 172 (715)
Q Consensus 98 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~L~~n~i-- 172 (715)
|+++.+ |.. .+++|++|++++|++++. .|..|.++++|++|++++|.+.+. .+..+++| ++|++++|.+
T Consensus 110 N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 777643 333 677777777777777652 346677777777777777776642 33444444 7777777777
Q ss_pred cccCCccccCCCC-CcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceecccc
Q 046340 173 SGEIPFSIYNLSS-LTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS 251 (715)
Q Consensus 173 ~~~~~~~l~~l~~-L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~ 251 (715)
++..|..+..+.. .-.++++.|.+.+.++...+..+++|+.+++++|..... .+.+..+.
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l~~~~~~ 244 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RLMTFLSE 244 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HHHHHHHH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hHHHHHHH
Confidence 6666665555431 113455555554444444333444444444444421000 01111112
Q ss_pred ccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCcc
Q 046340 252 LENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSG 331 (715)
Q Consensus 252 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 331 (715)
+..+++|+.++++++.+. ++.+.+. +..+. . .+|++|++++|.+++.+|..
T Consensus 245 l~~l~~L~~L~L~~~~l~--------------------------~~~~~~~-~~~~~-~-~~L~~L~l~~n~l~~~ip~~ 295 (562)
T 3a79_B 245 LTRGPTLLNVTLQHIETT--------------------------WKCSVKL-FQFFW-P-RPVEYLNIYNLTITERIDRE 295 (562)
T ss_dssp HHSCSSCEEEEEEEEEEC--------------------------HHHHHHH-HHHHT-T-SSEEEEEEEEEEECSCCCCC
T ss_pred HhccCcceEEEecCCcCc--------------------------HHHHHHH-HHhhh-c-ccccEEEEeccEeeccccch
Confidence 333333333333332221 1111111 11111 1 14666666666666555554
Q ss_pred c-----cCCCCCCEEEcCCceeeeecC-ccccC---CCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCc
Q 046340 332 L-----RNLVNLELLHLGGNQFTGQIP-GSIGD---LHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPS 402 (715)
Q Consensus 332 ~-----~~l~~L~~L~L~~n~i~~~~~-~~~~~---l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 402 (715)
+ .+++.|+.++++.+.+ ..| ..+.. ..+|++|++++|.+.... ....+++|++|++++|.+.+..|.
T Consensus 296 ~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~ 371 (562)
T 3a79_B 296 EFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ 371 (562)
T ss_dssp CCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred hhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhh
Confidence 4 4444444445554444 122 22221 256777777777764322 125677788888888888777777
Q ss_pred ccccCCCCCEEeCcCcccccc--cCccccccccccceEEccCCcccc-cCCcCCcCCCCCCceeccCCcCccccChhhhc
Q 046340 403 SLGKCQNLILLDLSNNNLSGT--IPTEVIGLSSLSIYLDLSQNQLNG-SLPPNFGILKNLGGIDISENKLSGEIPNSLGS 479 (715)
Q Consensus 403 ~~~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~l~~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 479 (715)
.+..+++|++|++++|++++. .|..+..++.+ +.|++++|.+++ ..+..+..+++|++|++++|++++..|..+.
T Consensus 372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~- 449 (562)
T 3a79_B 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP- 449 (562)
T ss_dssp TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-
T ss_pred hhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-
Confidence 777788888888888887742 23456666777 778888888876 3344578888999999999998876555443
Q ss_pred CcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCC
Q 046340 480 CIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVK 548 (715)
Q Consensus 480 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~ 548 (715)
++|++|++++|+++. +|..+..+++|+.|++++|+++.+++..|..+++|+.|++++|++.|.++..
T Consensus 450 -~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 450 -PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp -TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred -CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 689999999999984 5555558999999999999999766666899999999999999999877643
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-44 Score=397.15 Aligned_cols=460 Identities=19% Similarity=0.200 Sum_probs=333.8
Q ss_pred CEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeecc
Q 046340 43 RVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYN 122 (715)
Q Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 122 (715)
++||+++|+++. +|..+. ++|++|+|++|++++..|..|.++++|++|++++|++++..|..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578888888884 455454 78888888888888777778888888888888888888777888888888888888888
Q ss_pred ccccccCccccCCCCCCEEEcccCcceec-CCccccCCCCCCEEEeecccCcccCCccccCCCCC--cEEEccCCcccee
Q 046340 123 SLSGEIPSSFGNLSSLEFLSAAANQFVGQ-FPETLSELKMMRYISFGENKLSGEIPFSIYNLSSL--THFYFPFNQLQGS 199 (715)
Q Consensus 123 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L~l~~n~i~~~ 199 (715)
+++ .+|.. .+++|++|++++|.+.+. .|..|+++++|++|++++|.+++ ..+..+++| +.|++++|.+.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-
Confidence 887 34444 678888888888887763 46677777777777777777764 244555555 566665555510
Q ss_pred cCcchhcCCCCCCEEEeeCccccccCCccccCCC-CCCEEEeecccceecccc--ccCcCCCcEEEcccCCCCCCCCCCc
Q 046340 200 LPSDLGFTLPNLEVLNVGGNQFTGPIPASISNAS-NLMRLTIAKNGFSGRVPS--LENLYKLQWVSISHNHLGNYGEKDN 276 (715)
Q Consensus 200 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~L~~n~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~ 276 (715)
.+..|..+..+. +...+++++|.+.+..+. +..+++|+.+++++|.....
T Consensus 153 ----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----- 205 (520)
T 2z7x_B 153 ----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK----- 205 (520)
T ss_dssp ----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT-----
T ss_pred ----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc-----
Confidence 222333332222 112233444443332221 33334444444443321000
Q ss_pred cccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccc---cCCCCCCEEEcCCceeeeecC
Q 046340 277 LEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGL---RNLVNLELLHLGGNQFTGQIP 353 (715)
Q Consensus 277 ~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~ 353 (715)
...+.+.++ .+..++ +|+.|++++|.+++..+..+ ...++|++|++++|.+++..|
T Consensus 206 -------------------~~~~~~~~~-~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 264 (520)
T 2z7x_B 206 -------------------CSYFLSILA-KLQTNP-KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264 (520)
T ss_dssp -------------------THHHHHHHH-GGGGCT-TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCC
T ss_pred -------------------cceeecchh-hhcccc-chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccc
Confidence 000333333 445554 48888888888775432221 124699999999999998888
Q ss_pred ccc-----cCCCCccEEEccCCcccccCCccccCC---CCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccccC
Q 046340 354 GSI-----GDLHKLQWLMLPANEFWGEIPSSIGNL---TSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIP 425 (715)
Q Consensus 354 ~~~-----~~l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 425 (715)
..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++|.+.... .+..+++|++|++++|++.+..|
T Consensus 265 ~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~ 341 (520)
T 2z7x_B 265 FRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVF 341 (520)
T ss_dssp CCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred cchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhh
Confidence 877 8999999999999998 3332455444 67999999999987543 13678999999999999998888
Q ss_pred ccccccccccceEEccCCcccc--cCCcCCcCCCCCCceeccCCcCccccC-hhhhcCcccccccccCCcccccCcccCC
Q 046340 426 TEVIGLSSLSIYLDLSQNQLNG--SLPPNFGILKNLGGIDISENKLSGEIP-NSLGSCIRLEELVMKGNFFQGNIPSSFS 502 (715)
Q Consensus 426 ~~~~~~~~l~~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 502 (715)
..+..++.+ +.|++++|++++ ..|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++++..+..+.
T Consensus 342 ~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 342 ENCGHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp TTCCCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred hhhccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc
Confidence 889899988 899999999997 445778999999999999999998454 4588899999999999999887777665
Q ss_pred CCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCC-CCCCCCCCccccCCCCCCCC
Q 046340 503 SLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPV-KGVFSNSSAISLDGNDNLCG 567 (715)
Q Consensus 503 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~ 567 (715)
++|+.|++++|+++ ..|..+..+++|++|++++|+++..++. ...+++++.+++.+|++.|+
T Consensus 421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 79999999999999 4556566999999999999999965543 34567889999999999995
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.4e-42 Score=378.16 Aligned_cols=460 Identities=17% Similarity=0.173 Sum_probs=325.0
Q ss_pred cCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCE
Q 046340 37 GNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWI 116 (715)
Q Consensus 37 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 116 (715)
..+...+++|+++|++++ +|..+. ++|++|+|++|.+++..+..|.++++|++|++++|+++++.|.+|.++++|++
T Consensus 28 ~~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp -----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 344555889999998886 454443 78888888888888777788888888888888888888888888888888888
Q ss_pred EEeeccccccccCccccCCCCCCEEEcccCcceecC-CccccCCCCCCEEEeecccCcccCCccccCCCCC--cEEEccC
Q 046340 117 LSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQF-PETLSELKMMRYISFGENKLSGEIPFSIYNLSSL--THFYFPF 193 (715)
Q Consensus 117 L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L~l~~ 193 (715)
|++++|+++ .+|.. .+++|++|++++|.+.+.. |..|.++++|++|++++|.++.. .+..+++| +.|++++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 888888888 45544 6888888888888887643 46777888888888888777642 33334444 6666666
Q ss_pred Ccc--ceecCcchhcCCCCCCEEEeeCccccccCCccccCCC-CCCEEEeecccceecccc--ccCcCCCcEEEcccCCC
Q 046340 194 NQL--QGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNAS-NLMRLTIAKNGFSGRVPS--LENLYKLQWVSISHNHL 268 (715)
Q Consensus 194 n~i--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~L~~n~~~~~~~~--~~~l~~L~~L~l~~n~l 268 (715)
|.+ ++..| ..+..+. ....++++.|.+.+..+. +..+++|+.+++++|..
T Consensus 179 n~l~~~~~~~-------------------------~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 179 VSYHIKGGET-------------------------ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp SSCCCCSSSC-------------------------CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred ccccccccCc-------------------------ccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence 655 33333 3333222 011334444444432222 44455566666655531
Q ss_pred CCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeec----CCccccCCCCCCEEEcC
Q 046340 269 GNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGN----IPSGLRNLVNLELLHLG 344 (715)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~ 344 (715)
.. .........+...++ ++.++++++.+.+. .+.. ...++|++|+++
T Consensus 234 ~~---~~l~~~~~~l~~l~~-------------------------L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~ 284 (562)
T 3a79_B 234 NC---QRLMTFLSELTRGPT-------------------------LLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIY 284 (562)
T ss_dssp TH---HHHHHHHHHHHSCSS-------------------------CEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEE
T ss_pred cc---chHHHHHHHHhccCc-------------------------ceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEe
Confidence 10 000011112233333 55555555444321 1111 234599999999
Q ss_pred CceeeeecCccc-----cCCCCccEEEccCCcccccCC-ccccC---CCCCCeEeccCCcccccCCcccccCCCCCEEeC
Q 046340 345 GNQFTGQIPGSI-----GDLHKLQWLMLPANEFWGEIP-SSIGN---LTSLAILAFDENMLEGSIPSSLGKCQNLILLDL 415 (715)
Q Consensus 345 ~n~i~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~-~~~~~---l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L 415 (715)
+|.+++..|..+ ..++.|+.++++.+.+ ..| ..+.. ..+|+.|++++|.+.... ....+++|++|++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred ccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 999997777766 6777777777777766 233 22222 267999999999986432 1267899999999
Q ss_pred cCcccccccCccccccccccceEEccCCcccccC--CcCCcCCCCCCceeccCCcCcc-ccChhhhcCcccccccccCCc
Q 046340 416 SNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSL--PPNFGILKNLGGIDISENKLSG-EIPNSLGSCIRLEELVMKGNF 492 (715)
Q Consensus 416 ~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 492 (715)
++|++.+..|..+..++.+ +.|++++|++++.. |..|..+++|++|++++|++.+ ..+..+..+++|++|++++|+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCccccchhhhhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 9999998888889999988 89999999999743 4678999999999999999998 444568899999999999999
Q ss_pred ccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCC-CCCCCCCCccccCCCCCCCC
Q 046340 493 FQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPV-KGVFSNSSAISLDGNDNLCG 567 (715)
Q Consensus 493 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~ 567 (715)
+++..+..+. ++|+.|++++|+++.+++..+ .+++|++|++++|+++..++. ...+++++.+++.+|++.|+
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 9877766654 799999999999996554544 999999999999999965554 35567889999999999996
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.5e-41 Score=361.41 Aligned_cols=382 Identities=20% Similarity=0.211 Sum_probs=249.6
Q ss_pred EEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcc-cCCccccCCCCCCEEEccCCc
Q 046340 21 LRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGG-QIPDNISHCVNLESLGLGVNE 99 (715)
Q Consensus 21 l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~ 99 (715)
++.++++++.. |. + .++|++|||++|.+++..+..|+++++|++|+|++|.+.+ ..+..|.++++|++|++++|+
T Consensus 15 ~~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLHQV-PE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCSSC-CC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcccC-CC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 44444555533 33 2 2788888888888888878888888888888888888863 346678888888888888888
Q ss_pred CccCccccccCCCCCCEEEeeccccccccCcc--ccCCCCCCEEEcccCcceecCCcc-ccCCCCCCEEEeecccCcccC
Q 046340 100 LVGKVPGKLGSLSKLWILSVHYNSLSGEIPSS--FGNLSSLEFLSAAANQFVGQFPET-LSELKMMRYISFGENKLSGEI 176 (715)
Q Consensus 100 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~n~i~~~~ 176 (715)
+.+..|..|.++++|++|++++|++++..+.. |..+++|++|++++|.+.+..|.. |..+++|++|++++|.+++..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 88887888888888888888888887644443 888888888888888888776665 788888888888888888877
Q ss_pred CccccCC--CCCcEEEccCCccceecCcch-------hcCCCCCCEEEeeCccccccCCccccCC---CCCCEEEeeccc
Q 046340 177 PFSIYNL--SSLTHFYFPFNQLQGSLPSDL-------GFTLPNLEVLNVGGNQFTGPIPASISNA---SNLMRLTIAKNG 244 (715)
Q Consensus 177 ~~~l~~l--~~L~~L~l~~n~i~~~~~~~~-------~~~l~~L~~L~L~~n~l~~~~~~~l~~~---~~L~~L~L~~n~ 244 (715)
+..+..+ .+|+.|++++|.+.+..+..+ ...+++|+.|++++|.+++..+..+... ++|+.|++++|.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 7777765 678888888887763222211 1134567777777776665555444332 556666666554
Q ss_pred ceeccccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccce
Q 046340 245 FSGRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQL 324 (715)
Q Consensus 245 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i 324 (715)
..+..... +.+...... .+ .-...++|+.|++++|.+.+..|..+..++. |++|++++|.+
T Consensus 251 ~~~~~~~~-------------~~~~~~~~~---~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l 311 (455)
T 3v47_A 251 NMGSSFGH-------------TNFKDPDNF---TF--KGLEASGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEI 311 (455)
T ss_dssp TTSCCTTC-------------CSSCCCCTT---TT--GGGTTSCCCEEECCSSCCCEECTTTTTTCTT-CCEEECTTSCC
T ss_pred ccccccch-------------hhhccCccc---cc--ccccccCceEEEecCccccccchhhcccCCC-CCEEECCCCcc
Confidence 43221111 111110000 00 0012345666666666666665655555543 66666666666
Q ss_pred eecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCccc
Q 046340 325 FGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSL 404 (715)
Q Consensus 325 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 404 (715)
++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..|
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 66666666666666666666666665556666666666666666666666666666666666666666666665555555
Q ss_pred ccCCCCCEEeCcCcccccccC
Q 046340 405 GKCQNLILLDLSNNNLSGTIP 425 (715)
Q Consensus 405 ~~~~~L~~L~L~~n~l~~~~~ 425 (715)
..+++|++|++++|++.+..|
T Consensus 392 ~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcccEEEccCCCcccCCC
Confidence 666666666666666664433
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-39 Score=352.33 Aligned_cols=376 Identities=20% Similarity=0.175 Sum_probs=311.3
Q ss_pred Ccccc--eeeCCC--------CCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCc-cCChhhcCCCCCcEEecC
Q 046340 4 CQWKG--VTCSPR--------HQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRD-EIPQEIGYLFRLQILALH 72 (715)
Q Consensus 4 c~~~~--~~~~~~--------~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls 72 (715)
|.|.+ +.|... +.+++.|+|++|.+++..+..|+++++|++|+|++|.+.+ +.+..|.++++|++|+|+
T Consensus 8 c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 8 CSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp CEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred eEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 55544 666653 2679999999999999999999999999999999999874 457789999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEEccCCcCccCcccc--ccCCCCCCEEEeeccccccccCcc-ccCCCCCCEEEcccCcce
Q 046340 73 NNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGK--LGSLSKLWILSVHYNSLSGEIPSS-FGNLSSLEFLSAAANQFV 149 (715)
Q Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~ 149 (715)
+|++++..|..|+++++|++|++++|++.+..+.. |..+++|++|++++|++++..|.. |.++++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999888999999999999999999998755544 999999999999999999877776 899999999999999999
Q ss_pred ecCCccccCC--CCCCEEEeecccCcccCCcc--------ccCCCCCcEEEccCCccceecCcchhc--CCCCCCEEEee
Q 046340 150 GQFPETLSEL--KMMRYISFGENKLSGEIPFS--------IYNLSSLTHFYFPFNQLQGSLPSDLGF--TLPNLEVLNVG 217 (715)
Q Consensus 150 ~~~~~~l~~l--~~L~~L~L~~n~i~~~~~~~--------l~~l~~L~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~L~ 217 (715)
+..+..+..+ ..|+.|++++|.+.+..+.. +..+++|+.|++++|++.+..|..+.. ..++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 9888888766 78999999999998766544 336789999999999998777776653 24889999999
Q ss_pred CccccccCCccccCCCCCCEEEeecccceecccc-cc--CcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEc
Q 046340 218 GNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS-LE--NLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEI 294 (715)
Q Consensus 218 ~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~l 294 (715)
+|...+.... .+.+...... +. ..++|+.|++++|.+.... ...+..+++|+.|++
T Consensus 248 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~L 306 (455)
T 3v47_A 248 NSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL-------KSVFSHFTDLEQLTL 306 (455)
T ss_dssp TCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC-------TTTTTTCTTCCEEEC
T ss_pred cccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccc-------hhhcccCCCCCEEEC
Confidence 9976643111 1111111111 22 2357788888888776522 235677888888999
Q ss_pred cCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccc
Q 046340 295 SDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWG 374 (715)
Q Consensus 295 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 374 (715)
++|.+.+..+..+..++. |++|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|.+++
T Consensus 307 s~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTH-LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTSCCCEECTTTTTTCTT-CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcCccc-CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 999888887878877755 9999999999998888889999999999999999998889999999999999999999988
Q ss_pred cCCccccCCCCCCeEeccCCcccccCC
Q 046340 375 EIPSSIGNLTSLAILAFDENMLEGSIP 401 (715)
Q Consensus 375 ~~~~~~~~l~~L~~L~l~~n~i~~~~~ 401 (715)
..+..|..+++|++|++++|++....|
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCHhHhccCCcccEEEccCCCcccCCC
Confidence 888888999999999999999987655
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.4e-38 Score=337.04 Aligned_cols=409 Identities=22% Similarity=0.254 Sum_probs=210.8
Q ss_pred CCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCC-------------CCEEEccCCcCccCcc
Q 046340 39 LSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVN-------------LESLGLGVNELVGKVP 105 (715)
Q Consensus 39 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~~~ 105 (715)
.++|++|++++|.+ +.+|++|+++++|++|++++|++.+..|..++++.+ |++|++++|.+++. |
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence 34555555555555 344555555555555555555555555555555443 47777777776643 2
Q ss_pred ccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCC
Q 046340 106 GKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSS 185 (715)
Q Consensus 106 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 185 (715)
. -.++|++|++++|.+++ +|.. +++|++|++++|.++++... .++|++|++++|.+++ +| .+..+++
T Consensus 88 ~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 2 13567777777777774 4432 36777777777776653211 1567777777777775 44 4777777
Q ss_pred CcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEccc
Q 046340 186 LTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISH 265 (715)
Q Consensus 186 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~ 265 (715)
|++|++++|+++ .+|.. .++|+.|++++|.+++ +| .+.++++|++|++++|.+.+.... .++|++|++++
T Consensus 155 L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 155 LKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGN 224 (454)
T ss_dssp CCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCS
T ss_pred CCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcC
Confidence 777777777776 35542 3577777777777775 34 477777777777777777653221 24677777777
Q ss_pred CCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCC
Q 046340 266 NHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGG 345 (715)
Q Consensus 266 n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 345 (715)
|.++.++ .+..+++|+.|++++|++++. |. .+.+|+.|++++|.+++ +|.. .++|+.|++++
T Consensus 225 n~l~~lp---------~~~~l~~L~~L~l~~N~l~~l-~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 225 NILEELP---------ELQNLPFLTTIYADNNLLKTL-PD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp SCCSSCC---------CCTTCTTCCEEECCSSCCSSC-CS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred CcCCccc---------ccCCCCCCCEEECCCCcCCcc-cc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 7766432 245677777777777777642 32 12457778888877765 3332 36778888888
Q ss_pred ceeeeecCccccCCCCccEEEccCCcccccCCccccCC-CCCCeEeccCCcccccCCcccccCCCCCEEeCcCccccccc
Q 046340 346 NQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNL-TSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTI 424 (715)
Q Consensus 346 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 424 (715)
|.+++... -.++|++|++++|.+++.. .+ ++|++|++++|++.+ +|.. +++|+.|++++|+++ .+
T Consensus 287 N~l~~l~~----~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~l 352 (454)
T 1jl5_A 287 NIFSGLSE----LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EV 352 (454)
T ss_dssp SCCSEESC----CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CC
T ss_pred CccCcccC----cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cc
Confidence 87775321 1257778888887775422 23 477788888887775 3332 467888888888777 44
Q ss_pred CccccccccccceEEccCCcccc--cCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccc--cCccc
Q 046340 425 PTEVIGLSSLSIYLDLSQNQLNG--SLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQG--NIPSS 500 (715)
Q Consensus 425 ~~~~~~~~~l~~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~ 500 (715)
|. .++.+ +.|++++|++++ ..|..+.. ++.|.+.+..|.. +++|++|++++|.+++ .+|
T Consensus 353 p~---~l~~L-~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP-- 415 (454)
T 1jl5_A 353 PE---LPQNL-KQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP-- 415 (454)
T ss_dssp CC---CCTTC-CEEECCSSCCSSCCCCCTTCCE--------EECCC----------------------------------
T ss_pred cc---hhhhc-cEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccch--
Confidence 54 24455 677888887776 44444432 3345555554442 4678888888888875 333
Q ss_pred CCCCCCCCEEeCCCCcccccCCccc
Q 046340 501 FSSLRGMQNLDLSRNNLSGRIPKYF 525 (715)
Q Consensus 501 ~~~l~~L~~L~L~~N~l~~~~~~~~ 525 (715)
.+++.|.+.+|.+.+..+...
T Consensus 416 ----~sl~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 416 ----ESVEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp -------------------------
T ss_pred ----hhHhheeCcCcccCCccccCH
Confidence 346677778887766554433
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-38 Score=340.25 Aligned_cols=418 Identities=22% Similarity=0.233 Sum_probs=229.5
Q ss_pred CCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEE
Q 046340 63 LFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLS 142 (715)
Q Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 142 (715)
.+.|++|++++|.+ +.+|..++++++|++|++++|.+.+..|..++++++|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 47788888888887 57777788888888888888888777787777777765555544431 3456777
Q ss_pred cccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCcccc
Q 046340 143 AAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFT 222 (715)
Q Consensus 143 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~ 222 (715)
+++|.++++.. -.++|++|++++|.+++ +|.. +++|+.|++++|+++ .++. ..++|++|++++|.++
T Consensus 78 l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 78 LNNLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLE 144 (454)
T ss_dssp CTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCS
T ss_pred ecCCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCC
Confidence 77777665322 13567777777777765 3322 366777777777766 3332 1257777777777777
Q ss_pred ccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCccccc
Q 046340 223 GPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGM 302 (715)
Q Consensus 223 ~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~ 302 (715)
+ +| .+.++++|++|++++|.+.+.... ..+|++|++++|+++.++ .+..+++|+.|++++|.+++
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~---------~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP---------ELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC---------CCTTCTTCCEEECCSSCCSS-
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCc---------cccCCCCCCEEECCCCcCCc-
Confidence 5 44 477777777777777777653322 247778888877776532 35667788888888887775
Q ss_pred CChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccC
Q 046340 303 LPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGN 382 (715)
Q Consensus 303 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 382 (715)
+|. .+.+|++|++++|.++ .+| .+..+++|++|++++|++++. |. .+++|++|++++|.+.+. |..
T Consensus 210 l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-~~~--- 275 (454)
T 1jl5_A 210 LPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-PEL--- 275 (454)
T ss_dssp CCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-CCC---
T ss_pred CCC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-Ccc---
Confidence 222 1235888888888887 445 377888888888888888753 32 247788888888887653 322
Q ss_pred CCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccccCccccccc-cccceEEccCCcccccCCcCCcCCCCCCc
Q 046340 383 LTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLS-SLSIYLDLSQNQLNGSLPPNFGILKNLGG 461 (715)
Q Consensus 383 l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~ 461 (715)
+++|++|++++|.+++... -.++|+.|++++|++.+ ++ ..+ .+ +.|++++|++++ .|.. +++|++
T Consensus 276 ~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~-i~----~~~~~L-~~L~Ls~N~l~~-lp~~---~~~L~~ 341 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRS-LC----DLPPSL-EELNVSNNKLIE-LPAL---PPRLER 341 (454)
T ss_dssp CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSE-EC----CCCTTC-CEEECCSSCCSC-CCCC---CTTCCE
T ss_pred cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCc-cc----CCcCcC-CEEECCCCcccc-cccc---CCcCCE
Confidence 3678888888888775321 12678888888888774 22 222 34 678888888875 3433 467888
Q ss_pred eeccCCcCccccChhhhcCcccccccccCCcccc--cCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCC
Q 046340 462 IDISENKLSGEIPNSLGSCIRLEELVMKGNFFQG--NIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 539 (715)
Q Consensus 462 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N 539 (715)
|++++|++++ +|. .+++|++|++++|++++ .+|..+. .| +.|.+.+..|.. +++|++|++++|
T Consensus 342 L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ls~N 406 (454)
T 1jl5_A 342 LIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL---PQNLKQLHVETN 406 (454)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC-----------------------
T ss_pred EECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc---cCcCCEEECCCC
Confidence 8888888774 343 36778888888888876 3444433 22 234555554442 367888999999
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCC
Q 046340 540 HFEGEVPVKGVFSNSSAISLDGNDNLC 566 (715)
Q Consensus 540 ~l~~~~~~~~~~~~~~~~~~~~n~~~c 566 (715)
++.+... +..++..+.+.++...|
T Consensus 407 ~l~~~~~---iP~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 407 PLREFPD---IPESVEDLRMNSERVVD 430 (454)
T ss_dssp ---------------------------
T ss_pred cCCcccc---chhhHhheeCcCcccCC
Confidence 8886321 22445666666665544
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=337.14 Aligned_cols=347 Identities=19% Similarity=0.224 Sum_probs=258.4
Q ss_pred cEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceecccc-ccCcCCCcEEEccc
Q 046340 187 THFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS-LENLYKLQWVSISH 265 (715)
Q Consensus 187 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~ 265 (715)
+.++.+++.++ .+|..+ .++++.|++++|.+++..+..|.++++|++|++++|.+.+..+. +..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555555 555543 25677777777777766666777777777777777777665443 55555666666655
Q ss_pred CCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCC
Q 046340 266 NHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGG 345 (715)
Q Consensus 266 n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 345 (715)
|.++.+ .+..+..++ +|++|++++|.+.+..+..|.++++|+.|++++
T Consensus 90 n~l~~~-------------------------------~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 90 NRLKLI-------------------------------PLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137 (477)
T ss_dssp SCCCSC-------------------------------CTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECC
T ss_pred CcCCcc-------------------------------CcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCC
Confidence 555432 222233332 266666666666666666677777777777777
Q ss_pred ceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccccC
Q 046340 346 NQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIP 425 (715)
Q Consensus 346 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 425 (715)
|.+.+..+..|.++++|++|++++|.+++..+..|.++++|+.|++++|.+.+..+..|..+++|+.|++++|...+.++
T Consensus 138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 77777777777777777777777777766666667777778888888887777777777778888888888877666666
Q ss_pred ccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCC
Q 046340 426 TEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLR 505 (715)
Q Consensus 426 ~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 505 (715)
........+ +.|++++|.++...+..|..+++|+.|+|++|.+.+..+..|.++++|++|++++|++++..+..|.+++
T Consensus 218 ~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 218 PNCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296 (477)
T ss_dssp TTTTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred cccccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence 665555566 7888888888865556788889999999999999988888899999999999999999999999999999
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCccccCCCCCCCCccc
Q 046340 506 GMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVKGVFSNSSAISLDGNDNLCGGIS 570 (715)
Q Consensus 506 ~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 570 (715)
+|+.|+|++|.++++.+..|..+++|++|++++|++.+.++..+.+.......+.++...|..+.
T Consensus 297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 99999999999999888899999999999999999998887666555555667778888887543
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-35 Score=320.01 Aligned_cols=343 Identities=27% Similarity=0.363 Sum_probs=176.1
Q ss_pred CeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEcc
Q 046340 17 RVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLG 96 (715)
Q Consensus 17 ~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 96 (715)
+++.|+++++++... + .+..+++|++|||++|.+++..+ +.++++|++|++++|++.+..+ +.++++|++|+++
T Consensus 47 ~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 445555555544431 2 24455555555555555544322 5555555555555555543322 4555555555555
Q ss_pred CCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccC
Q 046340 97 VNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEI 176 (715)
Q Consensus 97 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 176 (715)
+|.+.+..+ +..+++|++|++++|.+++ .+ .+..+++|++|++. +.+.+.. .+..+++|++|++++|.+++.
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC-
Confidence 555543322 4555555555555555442 11 24455555555553 2222221 144455555555555554432
Q ss_pred CccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcC
Q 046340 177 PFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLY 256 (715)
Q Consensus 177 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~ 256 (715)
..+..+++|+.|++++| .+++..+ +..+++|++|++++|.+.+. +.+..++
T Consensus 193 -~~l~~l~~L~~L~l~~n-------------------------~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~ 243 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNN-------------------------QISDITP--LGILTNLDELSLNGNQLKDI-GTLASLT 243 (466)
T ss_dssp -GGGGGCTTCSEEECCSS-------------------------CCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCT
T ss_pred -hhhccCCCCCEEEecCC-------------------------ccccccc--ccccCCCCEEECCCCCcccc-hhhhcCC
Confidence 12444444445555444 4443322 34444555555555544432 2344455
Q ss_pred CCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCC
Q 046340 257 KLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLV 336 (715)
Q Consensus 257 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 336 (715)
+|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ +..++ +|+.|++++|.+.+..+ +..++
T Consensus 244 ~L~~L~l~~n~l~~~~---------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~ 309 (466)
T 1o6v_A 244 NLTDLDLANNQISNLA---------PLSGLTKLTELKLGANQISNISP--LAGLT-ALTNLELNENQLEDISP--ISNLK 309 (466)
T ss_dssp TCSEEECCSSCCCCCG---------GGTTCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCSCCGG--GGGCT
T ss_pred CCCEEECCCCccccch---------hhhcCCCCCEEECCCCccCcccc--ccCCC-ccCeEEcCCCcccCchh--hcCCC
Confidence 5555555555544321 13445555556665555554332 33332 36666666666654332 55666
Q ss_pred CCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCc
Q 046340 337 NLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLS 416 (715)
Q Consensus 337 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~ 416 (715)
+|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+.++++|+.|++++|++.+..| +..+++|+.|+++
T Consensus 310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 66666666666665443 55666666666666666554 346666667777777766665554 5666677777777
Q ss_pred Cccccc
Q 046340 417 NNNLSG 422 (715)
Q Consensus 417 ~n~l~~ 422 (715)
+|++++
T Consensus 384 ~n~~~~ 389 (466)
T 1o6v_A 384 DQAWTN 389 (466)
T ss_dssp CEEEEC
T ss_pred CCcccC
Confidence 776663
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.4e-36 Score=322.31 Aligned_cols=347 Identities=26% Similarity=0.390 Sum_probs=256.6
Q ss_pred CCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEE
Q 046340 38 NLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWIL 117 (715)
Q Consensus 38 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 117 (715)
.+++++.|+++++.++.. + .+..+++|++|+|++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 355666777776666543 2 26666666666666666664433 6666666666666666654443 6666666666
Q ss_pred EeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccc
Q 046340 118 SVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQ 197 (715)
Q Consensus 118 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~ 197 (715)
++++|.+++..+ +.++++|++|++++|.+.+.. .+..+++|++|+++ |.+.+.. .+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~---------------- 174 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLA---------------- 174 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGT----------------
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhc----------------
Confidence 666666653321 556666666666666555421 25555555555554 2222111 123
Q ss_pred eecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCCCcc
Q 046340 198 GSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNL 277 (715)
Q Consensus 198 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 277 (715)
.+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.+
T Consensus 175 ---------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------ 236 (466)
T 1o6v_A 175 ---------NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI------ 236 (466)
T ss_dssp ---------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC------
T ss_pred ---------cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc------
Confidence 556666666666666543 347889999999999999987655 78899999999999998763
Q ss_pred ccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCcccc
Q 046340 278 EFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIG 357 (715)
Q Consensus 278 ~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 357 (715)
..+..+++|+.|++++|.+.+..+ +..++ +|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +.
T Consensus 237 ---~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 306 (466)
T 1o6v_A 237 ---GTLASLTNLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS 306 (466)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred ---hhhhcCCCCCEEECCCCccccchh--hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence 356788999999999999987654 55664 59999999999987544 8899999999999999986544 88
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccccCccccccccccce
Q 046340 358 DLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIY 437 (715)
Q Consensus 358 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 437 (715)
.+++|++|++++|.+++..+ +..+++|++|++++|++.+. ..+..+++|+.|++++|++.+..| +..++.+ +.
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~ 379 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI-TQ 379 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC-CE
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC-CE
Confidence 99999999999999988766 78999999999999999876 478899999999999999997665 7788888 89
Q ss_pred EEccCCccccc
Q 046340 438 LDLSQNQLNGS 448 (715)
Q Consensus 438 L~Ls~n~i~~~ 448 (715)
|++++|++++.
T Consensus 380 L~l~~n~~~~~ 390 (466)
T 1o6v_A 380 LGLNDQAWTNA 390 (466)
T ss_dssp EECCCEEEECC
T ss_pred EeccCCcccCC
Confidence 99999999963
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-36 Score=323.31 Aligned_cols=324 Identities=20% Similarity=0.184 Sum_probs=232.7
Q ss_pred CCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccc
Q 046340 27 LLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPG 106 (715)
Q Consensus 27 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 106 (715)
+..+..+..++++++|++||+++|.+++. | .|..+++|++|+|++|++++. + ++.+++|++|++++|.+++. +
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence 34455566788899999999999999875 4 688999999999999999864 3 88899999999999998875 2
Q ss_pred cccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCC
Q 046340 107 KLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSL 186 (715)
Q Consensus 107 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 186 (715)
++.+++|++|++++|++++. + +..+++|++|++++|.++++ .+..+++|++|++++|...+.. .+..+++|
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 88899999999999998853 3 88889999999999998875 3778888999999998544333 47788888
Q ss_pred cEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccC
Q 046340 187 THFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHN 266 (715)
Q Consensus 187 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n 266 (715)
+.|++++|++++ +| ...+++|+.|++++|.+++. .+..+++|++|++++|.+.+. + +..+++|+.|++++|
T Consensus 173 ~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSS
T ss_pred CEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C-ccccCCCCEEEeeCC
Confidence 888888888873 55 33678888888888888865 377788888888888888774 3 677777888888887
Q ss_pred CCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCc
Q 046340 267 HLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGN 346 (715)
Q Consensus 267 ~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 346 (715)
+++.++ ...+++|+.|+++.|. |+.|++++|.+.+..| ++.+++|+.|++++|
T Consensus 244 ~l~~~~----------~~~l~~L~~L~l~~n~---------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 244 PLTELD----------VSTLSKLTTLHCIQTD---------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHN 296 (457)
T ss_dssp CCSCCC----------CTTCTTCCEEECTTCC---------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTC
T ss_pred cCCCcC----------HHHCCCCCEEeccCCC---------------CCEEECCCCccCCccc--ccccccCCEEECCCC
Confidence 776532 2345667777766542 5556666666554444 456666777777776
Q ss_pred eeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccc
Q 046340 347 QFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLS 421 (715)
Q Consensus 347 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 421 (715)
...+..|. ..++|+.|++++| ++|++|++++|++++. .+..+++|+.|++++|+++
T Consensus 297 ~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 297 TQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCC
T ss_pred cccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCC
Confidence 65444332 2233444433332 4566666666666653 2555666666666666655
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=319.46 Aligned_cols=320 Identities=22% Similarity=0.198 Sum_probs=199.8
Q ss_pred EEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCC
Q 046340 19 TGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVN 98 (715)
Q Consensus 19 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 98 (715)
+.++.+++++.. +|..+. +++++|||++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 345555666653 344442 57888888888888777778888888888888888888777778888888888888888
Q ss_pred cCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCc
Q 046340 99 ELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPF 178 (715)
Q Consensus 99 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 178 (715)
++.++.+..|.++++|++|+|++|++++..+..|.++++|++|++++|.+.++.+..|.++++|++|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 88766666777777888888887777766666777777777777777777766666666666676666666666654444
Q ss_pred cccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCC
Q 046340 179 SIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKL 258 (715)
Q Consensus 179 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L 258 (715)
.+..+++ |+.|++++|.+.+..+..+..+++|++|++++|...+..+.
T Consensus 171 ~l~~l~~-------------------------L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------- 218 (477)
T 2id5_A 171 ALSHLHG-------------------------LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP------- 218 (477)
T ss_dssp HHTTCTT-------------------------CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT-------
T ss_pred HhcccCC-------------------------CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc-------
Confidence 4444444 44444444444444444445555555555555433221111
Q ss_pred cEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCC
Q 046340 259 QWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNL 338 (715)
Q Consensus 259 ~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 338 (715)
......+ |++|++++|.+++..+..|..+++|
T Consensus 219 -----------------------~~~~~~~-------------------------L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 219 -----------------------NCLYGLN-------------------------LTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp -----------------------TTTTTCC-------------------------CSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred -----------------------ccccCcc-------------------------ccEEECcCCcccccCHHHhcCcccc
Confidence 0000112 4444444444443333345555566
Q ss_pred CEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCc
Q 046340 339 ELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNN 418 (715)
Q Consensus 339 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n 418 (715)
+.|+|++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 66666666665555555666666666666666666665666666666666666666666555555666666666666666
Q ss_pred ccc
Q 046340 419 NLS 421 (715)
Q Consensus 419 ~l~ 421 (715)
++.
T Consensus 331 ~l~ 333 (477)
T 2id5_A 331 PLA 333 (477)
T ss_dssp CEE
T ss_pred Ccc
Confidence 665
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.8e-36 Score=305.95 Aligned_cols=263 Identities=26% Similarity=0.455 Sum_probs=246.3
Q ss_pred CCCc--ccceeeCCCC--CCeEEEEcCCCCCCc--ccCccccCCCCCCEEeCCC-CCCCccCChhhcCCCCCcEEecCCC
Q 046340 2 HFCQ--WKGVTCSPRH--QRVTGLRLPSLLLQG--SLSPHIGNLSFLRVLDLKN-NSFRDEIPQEIGYLFRLQILALHNN 74 (715)
Q Consensus 2 ~~c~--~~~~~~~~~~--~~v~~l~l~~~~l~~--~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n 74 (715)
+||+ |.||.|.... ++|+.|+|+++++.+ .+|..|.++++|++|+|++ |.+.+..|..|.++++|++|+|++|
T Consensus 32 ~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE
T ss_pred CCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC
Confidence 6898 9999998654 799999999999999 8999999999999999995 9999899999999999999999999
Q ss_pred cCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCC-CCCEEEcccCcceecCC
Q 046340 75 TFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLS-SLEFLSAAANQFVGQFP 153 (715)
Q Consensus 75 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~ 153 (715)
++++..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|++++.+|..+..++ +|++|++++|.+.+..|
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 99999999999999999999999999999999999999999999999999989999999998 99999999999999999
Q ss_pred ccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCC
Q 046340 154 ETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNAS 233 (715)
Q Consensus 154 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~ 233 (715)
..|..++ |++|++++|.+++..|..+..+++|+.|++++|++++..|. +..+++|++|++++|.+++..|..+..++
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 9999987 99999999999999999999999999999999999866655 33689999999999999999999999999
Q ss_pred CCCEEEeecccceeccccccCcCCCcEEEcccCC
Q 046340 234 NLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNH 267 (715)
Q Consensus 234 ~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~ 267 (715)
+|++|++++|.+++..|....+++|+.+++++|+
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 9999999999999888877888888888888886
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.9e-35 Score=313.57 Aligned_cols=365 Identities=19% Similarity=0.198 Sum_probs=248.7
Q ss_pred CCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCcc
Q 046340 52 FRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSS 131 (715)
Q Consensus 52 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 131 (715)
.....+..++++++|++|++++|.+++. | .+..+++|++|++++|+++++ + ++.+++|++|++++|++++. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 3334455678888899999999888854 4 688888899999998888765 2 78888888888888888854 2
Q ss_pred ccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCC
Q 046340 132 FGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNL 211 (715)
Q Consensus 132 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L 211 (715)
+.++++|++|++++|.++++ + +..+++|++|++++|.+++. .+..+++|+.|++++|+..+.++ +..+++|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L 172 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQL 172 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTC
T ss_pred cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcC
Confidence 77888888888888888764 2 77888888888888888764 26777778888887775443442 2256667
Q ss_pred CEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCE
Q 046340 212 EVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLEL 291 (715)
Q Consensus 212 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~ 291 (715)
+.|++++|++++. + +..+++|+.|++++|.+++. .+..+ ++|+.
T Consensus 173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~--~l~~l-------------------------------~~L~~ 216 (457)
T 3bz5_A 173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL--DLNQN-------------------------------IQLTF 216 (457)
T ss_dssp CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC--CCTTC-------------------------------TTCSE
T ss_pred CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee--ccccC-------------------------------CCCCE
Confidence 7777777766642 2 55555666666665555443 23444 45555
Q ss_pred EEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCc
Q 046340 292 LEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANE 371 (715)
Q Consensus 292 L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 371 (715)
|++++|++++ +| +..++ +|+.|++++|.+++.. +..+++|+.|++++| +|+.|++++|.
T Consensus 217 L~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~ 275 (457)
T 3bz5_A 217 LDCSSNKLTE-ID--VTPLT-QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNT 275 (457)
T ss_dssp EECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCT
T ss_pred EECcCCcccc-cC--ccccC-CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCc
Confidence 5555555554 22 33332 3666666666665532 345566777776654 34556666666
Q ss_pred ccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCc
Q 046340 372 FWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPP 451 (715)
Q Consensus 372 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~ 451 (715)
+.+..| +.++++|+.|++++|...+.+|. ..++|+.|++++| +.+ +.|++++|++++.
T Consensus 276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L-~~L~L~~N~l~~l--- 333 (457)
T 3bz5_A 276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKL-VYLYLNNTELTEL--- 333 (457)
T ss_dssp TCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTC-CEEECTTCCCSCC---
T ss_pred cCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccC-CEEECCCCccccc---
Confidence 555544 45677788888887776655553 3456666666655 234 6788888888864
Q ss_pred CCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccc
Q 046340 452 NFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYF 525 (715)
Q Consensus 452 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 525 (715)
.+..+++|+.|++++|++++ ++.|..|.+++|.+.+. ..+..|..+++++|++++.+|..+
T Consensus 334 ~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 334 DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 27788889999999988875 35677788888888765 244567888999999998877644
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-33 Score=297.76 Aligned_cols=313 Identities=19% Similarity=0.178 Sum_probs=213.4
Q ss_pred ccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCC
Q 046340 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLW 115 (715)
Q Consensus 36 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 115 (715)
-..++++++|++++|.++...+..|..+++|++|+|++|+++...+..|..+++|++|++++|.+.+..|..|.++++|+
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 34568899999999999877777788899999999999999887788889999999999999999888888888889999
Q ss_pred EEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCc
Q 046340 116 ILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQ 195 (715)
Q Consensus 116 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 195 (715)
+|++++|+++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++. .+..+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999888855555578888888888888888877777788888888888888877754 24445556666666555
Q ss_pred cceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCCC
Q 046340 196 LQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKD 275 (715)
Q Consensus 196 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 275 (715)
+++ + ...++|++|++++|.+...... ..++|+.|++++|.++.
T Consensus 198 l~~-~-----------------------------~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~----- 240 (390)
T 3o6n_A 198 LST-L-----------------------------AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD----- 240 (390)
T ss_dssp CSE-E-----------------------------ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCC-----
T ss_pred ccc-c-----------------------------CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcc-----
Confidence 541 1 1122344444444443332111 12344444444444432
Q ss_pred ccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCcc
Q 046340 276 NLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGS 355 (715)
Q Consensus 276 ~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 355 (715)
. ..+..++ .|++|++++|.+++..|..|..+++|+.|++++|.+++. +..
T Consensus 241 --------------------------~--~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~ 290 (390)
T 3o6n_A 241 --------------------------T--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLY 290 (390)
T ss_dssp --------------------------C--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECS
T ss_pred --------------------------c--HHHcCCC-CccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-Ccc
Confidence 1 1233332 256666666666555566666667777777777776643 334
Q ss_pred ccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCccccc
Q 046340 356 IGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSG 422 (715)
Q Consensus 356 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 422 (715)
+..+++|++|++++|.+.+ .+..+..+++|++|++++|+++... +..+++|+.|++++|++..
T Consensus 291 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred cCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 4566777777777777753 3445666777777777777776542 5567778888888887764
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.5e-33 Score=287.32 Aligned_cols=308 Identities=27% Similarity=0.404 Sum_probs=196.9
Q ss_pred cccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCC
Q 046340 35 HIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKL 114 (715)
Q Consensus 35 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 114 (715)
.+..+++|++|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|++++|.+.+. ..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 345677888888888877654 2 37778888888888887774433 77788888888888877653 357778888
Q ss_pred CEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCC
Q 046340 115 WILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFN 194 (715)
Q Consensus 115 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 194 (715)
++|++++|.+++. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 8888888877743 22 7777888888888775544333 36777777778777777765443 667777777777777
Q ss_pred ccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCC
Q 046340 195 QLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEK 274 (715)
Q Consensus 195 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 274 (715)
.+. .++. +..+++|+.+++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.++.+
T Consensus 188 ~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--- 258 (347)
T 4fmz_A 188 QIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--- 258 (347)
T ss_dssp CCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---
T ss_pred ccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---
Confidence 766 3333 2356677777777776664433 5566666666666666654433 55555555555555554432
Q ss_pred CccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCc
Q 046340 275 DNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPG 354 (715)
Q Consensus 275 ~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 354 (715)
..+..+++ |++|++++|.+++. ..+..+++|+.|++++|.+++..+.
T Consensus 259 ------~~~~~l~~-------------------------L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 259 ------NAVKDLTK-------------------------LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp ------GGGTTCTT-------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred ------hhHhcCCC-------------------------cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 12333344 55555555555432 2355666666666666666666666
Q ss_pred cccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCccc
Q 046340 355 SIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLE 397 (715)
Q Consensus 355 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~ 397 (715)
.+..+++|++|++++|.+++..+ +..+++|++|++++|+++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 66666677777777766655544 566677777777776654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-32 Score=290.23 Aligned_cols=307 Identities=18% Similarity=0.174 Sum_probs=244.9
Q ss_pred CCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEc
Q 046340 16 QRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 95 (715)
.+++.++++++.++...+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 67889999999998877777899999999999999999888889999999999999999999888899999999999999
Q ss_pred cCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCccc
Q 046340 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGE 175 (715)
Q Consensus 96 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 175 (715)
++|.+..+.+..|.++++|++|++++|++++..+..|.++++|++|++++|.+++.. +..+++|++|++++|.+++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE-
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc-
Confidence 999999777777899999999999999999888888999999999999999998753 5678999999999998874
Q ss_pred CCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceecccc-ccC
Q 046340 176 IPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS-LEN 254 (715)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~ 254 (715)
+...++|+.|++++|.+. .+|.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+. +..
T Consensus 201 ----~~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp ----EECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ----cCCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 345578999999999998 44443 357899999999999854 5788899999999999998877554 788
Q ss_pred cCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccC
Q 046340 255 LYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRN 334 (715)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 334 (715)
+++|+.|++++|+++.++ ..+..+++|+.|++++|++.+ +|..+..++. |+.|++++|.++... +..
T Consensus 271 l~~L~~L~L~~n~l~~~~--------~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~-L~~L~L~~N~i~~~~---~~~ 337 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALN--------LYGQPIPTLKVLDLSHNHLLH-VERNQPQFDR-LENLYLDHNSIVTLK---LST 337 (390)
T ss_dssp CSSCCEEECCSSCCCEEE--------CSSSCCTTCCEEECCSSCCCC-CGGGHHHHTT-CSEEECCSSCCCCCC---CCT
T ss_pred cccCCEEECCCCcCcccC--------cccCCCCCCCEEECCCCccee-cCccccccCc-CCEEECCCCccceeC---chh
Confidence 888888888888776532 123445666666666666652 3333444432 555555555554321 344
Q ss_pred CCCCCEEEcCCceee
Q 046340 335 LVNLELLHLGGNQFT 349 (715)
Q Consensus 335 l~~L~~L~L~~n~i~ 349 (715)
+++|+.|++++|++.
T Consensus 338 ~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWD 352 (390)
T ss_dssp TCCCSEEECCSSCEE
T ss_pred hccCCEEEcCCCCcc
Confidence 455555555555544
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.9e-32 Score=284.29 Aligned_cols=303 Identities=24% Similarity=0.374 Sum_probs=241.7
Q ss_pred CCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEE
Q 046340 15 HQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLG 94 (715)
Q Consensus 15 ~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (715)
...++.|+++++.+... +.+..+++|++|++++|.+++..+ +.++++|++|++++|.++.. ..+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred cccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEE
Confidence 47899999999999854 358999999999999999987644 99999999999999999853 4699999999999
Q ss_pred ccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcc
Q 046340 95 LGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSG 174 (715)
Q Consensus 95 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 174 (715)
+++|.+.+..+ +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 117 l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 99999986544 899999999999999755343 459999999999999999986654 8899999999999999987
Q ss_pred cCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccC
Q 046340 175 EIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLEN 254 (715)
Q Consensus 175 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 254 (715)
..+ +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+. +.+..
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~ 263 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKD 263 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTT
T ss_pred ccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhc
Confidence 644 8899999999999999984333 3478999999999999986544 88999999999999999875 56899
Q ss_pred cCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccC
Q 046340 255 LYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRN 334 (715)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 334 (715)
+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..+..+..++. |++|++++|.+++..| +..
T Consensus 264 l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI---------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp CTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT-CSEEECCSSSCCCCGG--GGG
T ss_pred CCCcCEEEccCCccCCC---------hhhcCCCCCCEEECcCCcCCCcChhHhhcccc-CCEEEccCCccccccC--hhh
Confidence 99999999999988763 23556666777777777666555555555433 5555555555554333 445
Q ss_pred CCCCCEEEcCCcee
Q 046340 335 LVNLELLHLGGNQF 348 (715)
Q Consensus 335 l~~L~~L~L~~n~i 348 (715)
+++|+.|++++|.+
T Consensus 332 l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 332 LSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEESSSCC--
T ss_pred hhccceeehhhhcc
Confidence 55555555555554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-32 Score=304.23 Aligned_cols=311 Identities=18% Similarity=0.187 Sum_probs=214.4
Q ss_pred CCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEE
Q 046340 38 NLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWIL 117 (715)
Q Consensus 38 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 117 (715)
.+++++.|++++|.++.+.+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+.+..|..|+++++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788888888888887777778888888888888888887777788888888888888888888777788888888888
Q ss_pred EeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccc
Q 046340 118 SVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQ 197 (715)
Q Consensus 118 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~ 197 (715)
+|++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 88888888555555777888888888888877777777777777777777777776532 344455555555555443
Q ss_pred eecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCCCcc
Q 046340 198 GSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNL 277 (715)
Q Consensus 198 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 277 (715)
+ +...++|+.|++++|.+....+.+ .++|+.|++++|
T Consensus 206 -------------------------~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n----------- 242 (597)
T 3oja_B 206 -------------------------T-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHN----------- 242 (597)
T ss_dssp -------------------------E-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSS-----------
T ss_pred -------------------------c-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCC-----------
Confidence 1 122234444444444443322111 123444444444
Q ss_pred ccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCcccc
Q 046340 278 EFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIG 357 (715)
Q Consensus 278 ~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 357 (715)
.+++. ..+..++ .|+.|++++|.+++..|..|..+++|+.|+|++|.+++. +..+.
T Consensus 243 --------------------~l~~~--~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~ 298 (597)
T 3oja_B 243 --------------------NLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQ 298 (597)
T ss_dssp --------------------CCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSS
T ss_pred --------------------CCCCC--hhhccCC-CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Ccccc
Confidence 44321 2333443 366666666666666677777777778888887777754 44556
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCccccc
Q 046340 358 DLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSG 422 (715)
Q Consensus 358 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 422 (715)
.+++|++|+|++|.++ .+|..+..+++|+.|++++|.+.+.. +..+++|+.|++++|++.+
T Consensus 299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 6778888888888876 45556677888888888888887552 5667888899999988874
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.4e-33 Score=307.51 Aligned_cols=343 Identities=20% Similarity=0.234 Sum_probs=234.6
Q ss_pred CCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEE
Q 046340 183 LSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVS 262 (715)
Q Consensus 183 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~ 262 (715)
+++++.+++++|.+. .+|..++..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+.
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------- 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----------- 117 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-----------
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-----------
Confidence 455666666666665 55555544566666666666666655555566666666666666655554443
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEE
Q 046340 263 ISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLH 342 (715)
Q Consensus 263 l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 342 (715)
.+..+++|+.|++++|.+++..+..+..++ +|+.|++++|.+++..|..|.++++|+.|+
T Consensus 118 -------------------~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 118 -------------------VFQNVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp -------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred -------------------HHcCCCCCCEEEeeCCCCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 233444455555555555533333344443 367777777777666666677777777777
Q ss_pred cCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCccccc
Q 046340 343 LGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSG 422 (715)
Q Consensus 343 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 422 (715)
+++|.+++. .+..+++|+.|++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+++
T Consensus 178 L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 178 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD 246 (597)
T ss_dssp CTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC
T ss_pred CcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC
Confidence 777777654 24556777777777776643 234567778888888777544332 3578888888888874
Q ss_pred ccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCC
Q 046340 423 TIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFS 502 (715)
Q Consensus 423 ~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 502 (715)
+..+..++.+ +.|+|++|.+++..|..|..+++|+.|+|++|.+++. |..+..+++|+.|+|++|.++ .+|..+.
T Consensus 247 --~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 247 --TAWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp --CGGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred --ChhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccc
Confidence 3566677777 7888888888888888888888999999999988854 555677889999999999998 5566678
Q ss_pred CCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCccccCCCCCCCCcccccccCCC
Q 046340 503 SLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVKGVFSNSSAISLDGNDNLCGGISELHLSTC 577 (715)
Q Consensus 503 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~ 577 (715)
.+++|+.|+|++|.+++.. +..+++|+.|++++|++.|.+.. ..+.......+.+++..|+.........|
T Consensus 322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~~c 392 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDYQLEHGLC 392 (597)
T ss_dssp HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcchhccCCcc
Confidence 8899999999999998664 56778899999999999886532 33555566667788888986554444444
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.4e-33 Score=283.37 Aligned_cols=253 Identities=30% Similarity=0.530 Sum_probs=201.5
Q ss_pred cCcEEEccccceee--cCCccccCCCCCCEEEcCC-ceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeE
Q 046340 313 RLRKLIVGNNQLFG--NIPSGLRNLVNLELLHLGG-NQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAIL 389 (715)
Q Consensus 313 ~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 389 (715)
+++.|++++|.+.+ ..|..|.++++|++|++++ |.+.+..|..|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 36667777777666 5666777777777777774 67766677777777777777777777776777777777777777
Q ss_pred eccCCcccccCCcccccCCCCCEEeCcCcccccccCccccccc-cccceEEccCCcccccCCcCCcCCCCCCceeccCCc
Q 046340 390 AFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLS-SLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENK 468 (715)
Q Consensus 390 ~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 468 (715)
++++|.+.+..|..|..+++|++|++++|++.+.+|..+..+. .+ +.|++++|++++..|..|..++ |++|++++|.
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 7777777777777777777777777777777767777777766 44 7777888877777777777776 8888888888
Q ss_pred CccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCC
Q 046340 469 LSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVK 548 (715)
Q Consensus 469 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~ 548 (715)
+++..|..|..+++|++|++++|.+++.++. +..+++|+.|++++|.+++..|..|..+++|++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8888888888888899999999988866655 788899999999999999889999999999999999999999888877
Q ss_pred CCCCCCCccccCCCCCCCCc
Q 046340 549 GVFSNSSAISLDGNDNLCGG 568 (715)
Q Consensus 549 ~~~~~~~~~~~~~n~~~c~~ 568 (715)
..++++..+++.+|++.|+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccccccChHHhcCCCCccCC
Confidence 77888999999999999985
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.7e-34 Score=308.80 Aligned_cols=360 Identities=17% Similarity=0.129 Sum_probs=185.9
Q ss_pred CCeEEEEcCCCCCCcccCc-cccCCCCCCEEeCCCCCCCcc----CChhhcCCCCCcEEecCCCcCcccCCccc-cCCC-
Q 046340 16 QRVTGLRLPSLLLQGSLSP-HIGNLSFLRVLDLKNNSFRDE----IPQEIGYLFRLQILALHNNTFGGQIPDNI-SHCV- 88 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~- 88 (715)
.+++.|+++++.++..... .+..+++|++|+|++|.+++. .+..+..+++|++|+|++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3566677776666654322 366666777777777766542 24445566666666666666654333322 2233
Q ss_pred ---CCCEEEccCCcCcc----CccccccCCCCCCEEEeeccccccccCccc-----cCCCCCCEEEcccCcceecCCccc
Q 046340 89 ---NLESLGLGVNELVG----KVPGKLGSLSKLWILSVHYNSLSGEIPSSF-----GNLSSLEFLSAAANQFVGQFPETL 156 (715)
Q Consensus 89 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~l 156 (715)
+|++|++++|++.+ ..+..+..+++|++|++++|.++...+..+ ...++|++|++++|.+++.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~- 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP- 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH-
Confidence 46666666666653 235555666666666666666543322221 12344555555555554322111
Q ss_pred cCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchh----cCCCCCCEEEeeCcccccc----CCcc
Q 046340 157 SELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLG----FTLPNLEVLNVGGNQFTGP----IPAS 228 (715)
Q Consensus 157 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~----~~l~~L~~L~L~~n~l~~~----~~~~ 228 (715)
.+..+..+++|++|++++|.+.+..+..+. ...++|+.|++++|.+++. ++..
T Consensus 162 -------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 162 -------------------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp -------------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred -------------------HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 122233344444445444444322222111 1234566666666655532 2444
Q ss_pred ccCCCCCCEEEeecccceecc-----cc-ccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCccccc
Q 046340 229 ISNASNLMRLTIAKNGFSGRV-----PS-LENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGM 302 (715)
Q Consensus 229 l~~~~~L~~L~L~~n~~~~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~ 302 (715)
+..+++|++|++++|.+.+.. +. +..+++|++|++++|.++... ...+...+..+++|+.|++++|.+.+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG---CGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH---HHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH---HHHHHHHHhhCCCcceEECCCCCCchH
Confidence 555666666666666654321 11 234566666666666554310 001233455567777777777766554
Q ss_pred CChhHhhc----cccCcEEEccccceeec----CCccccCCCCCCEEEcCCceeeeecCccccC-----CCCccEEEccC
Q 046340 303 LPEAVGNL----STRLRKLIVGNNQLFGN----IPSGLRNLVNLELLHLGGNQFTGQIPGSIGD-----LHKLQWLMLPA 369 (715)
Q Consensus 303 ~~~~~~~~----~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~ 369 (715)
.+..+... .++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+.. .++|++|++++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 43333322 12466666666666543 2334455566666666666665443333321 45666666666
Q ss_pred Ccccc----cCCccccCCCCCCeEeccCCcccc
Q 046340 370 NEFWG----EIPSSIGNLTSLAILAFDENMLEG 398 (715)
Q Consensus 370 n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~ 398 (715)
|.+++ ..+..+..+++|++|++++|++.+
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 66553 344455555566666666665553
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.7e-31 Score=270.91 Aligned_cols=293 Identities=22% Similarity=0.205 Sum_probs=208.2
Q ss_pred CCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEe
Q 046340 40 SFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSV 119 (715)
Q Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 119 (715)
.+++.++++++.++. +|..+ .++|++|++++|.++...+..|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 378899999988874 44444 368899999999988777888899999999999999988888888999999999999
Q ss_pred eccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcc--cCCccccCCCCCcEEEccCCccc
Q 046340 120 HYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSG--EIPFSIYNLSSLTHFYFPFNQLQ 197 (715)
Q Consensus 120 s~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~i~ 197 (715)
++|+++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.++. ..+..+..+ +|+.|++++|+++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999888 4554443 789999999999888777788889999999999998863 566777777 8888888888887
Q ss_pred eecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceecccc-ccCcCCCcEEEcccCCCCCCCCCCc
Q 046340 198 GSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS-LENLYKLQWVSISHNHLGNYGEKDN 276 (715)
Q Consensus 198 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 276 (715)
.+|..++ ++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|+++.++
T Consensus 186 -~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp---- 257 (332)
T 2ft3_A 186 -GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP---- 257 (332)
T ss_dssp -SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC----
T ss_pred -ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC----
Confidence 5666543 6788888888888877777778888888888888877766553 666666666666666655322
Q ss_pred cccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceee--eecCc
Q 046340 277 LEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFT--GQIPG 354 (715)
Q Consensus 277 ~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~ 354 (715)
..+..+++|+.|++++|.+++..+..+..... -....+|+.|++++|.+. +..+.
T Consensus 258 ----~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-------------------~~~~~~l~~L~l~~N~~~~~~~~~~ 314 (332)
T 2ft3_A 258 ----AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-------------------GVKRAYYNGISLFNNPVPYWEVQPA 314 (332)
T ss_dssp ----TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC-------------------CSSSCCBSEEECCSSSSCGGGSCGG
T ss_pred ----hhhhcCccCCEEECCCCCCCccChhHcccccc-------------------ccccccccceEeecCcccccccCcc
Confidence 12444555555555555555443333222100 001245666666666655 44556
Q ss_pred cccCCCCccEEEccCC
Q 046340 355 SIGDLHKLQWLMLPAN 370 (715)
Q Consensus 355 ~~~~l~~L~~L~L~~n 370 (715)
.|..+++|+.+++++|
T Consensus 315 ~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 315 TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGTTBCCSTTEEC---
T ss_pred cccccchhhhhhcccc
Confidence 6666666766666665
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-30 Score=267.87 Aligned_cols=295 Identities=20% Similarity=0.234 Sum_probs=209.4
Q ss_pred CCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEe
Q 046340 40 SFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSV 119 (715)
Q Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 119 (715)
.++++++++++.++. +|..+ .+.|++|+|++|++++..+..|.++++|++|++++|.+.++.|..|.++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 477888888888774 34434 267888888888888777777888888888888888888777888888888888888
Q ss_pred eccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcc--cCCccccCCCCCcEEEccCCccc
Q 046340 120 HYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSG--EIPFSIYNLSSLTHFYFPFNQLQ 197 (715)
Q Consensus 120 s~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~i~ 197 (715)
++|+++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.++. ..+..+..+++|+.|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 888887 4454443 688888888888887777778888888888888888854 56677888888888888888887
Q ss_pred eecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceecccc-ccCcCCCcEEEcccCCCCCCCCCCc
Q 046340 198 GSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS-LENLYKLQWVSISHNHLGNYGEKDN 276 (715)
Q Consensus 198 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 276 (715)
.+|..++ ++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|+++.++.
T Consensus 185 -~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~--- 257 (330)
T 1xku_A 185 -TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--- 257 (330)
T ss_dssp -SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT---
T ss_pred -cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh---
Confidence 5665543 7888888888888877777888888888888888888776553 6677777777777776654322
Q ss_pred cccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeee--ecCc
Q 046340 277 LEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTG--QIPG 354 (715)
Q Consensus 277 ~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~ 354 (715)
.+..+++|++|++++|.+++..+..+.... ......+++.|++++|.+.. ..|.
T Consensus 258 -----~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~-------------------~~~~~~~l~~l~l~~N~~~~~~i~~~ 313 (330)
T 1xku_A 258 -----GLADHKYIQVVYLHNNNISAIGSNDFCPPG-------------------YNTKKASYSGVSLFSNPVQYWEIQPS 313 (330)
T ss_dssp -----TTTTCSSCCEEECCSSCCCCCCTTSSSCSS-------------------CCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred -----hhccCCCcCEEECCCCcCCccChhhcCCcc-------------------cccccccccceEeecCcccccccCcc
Confidence 344555666666666665544333222110 00123566777777776642 4456
Q ss_pred cccCCCCccEEEccCCc
Q 046340 355 SIGDLHKLQWLMLPANE 371 (715)
Q Consensus 355 ~~~~l~~L~~L~L~~n~ 371 (715)
.|..+.+++.+++++|+
T Consensus 314 ~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGTTCCCGGGEEC----
T ss_pred ccccccceeEEEecccC
Confidence 67777777777777763
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.3e-30 Score=265.08 Aligned_cols=267 Identities=18% Similarity=0.241 Sum_probs=134.3
Q ss_pred CCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEe
Q 046340 137 SLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNV 216 (715)
Q Consensus 137 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L 216 (715)
+|++|++++|.++++.+..|..+++|++|++++|.+++..|..|..+++|++|++++|+++ .+|..++ ++|+.|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEEC
Confidence 4444444444444444444444444444444444444444444445555555555555444 3443332 45566666
Q ss_pred eCccccccCCccccCCCCCCEEEeeccccee--ccc-cccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEE
Q 046340 217 GGNQFTGPIPASISNASNLMRLTIAKNGFSG--RVP-SLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLE 293 (715)
Q Consensus 217 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~--~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ 293 (715)
++|.+++..+..+.++++|++|++++|.+.. ..+ .+..+++|++|++++|.++.++.. + .++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~--------~--~~~----- 193 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--------L--PPS----- 193 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--------C--CTT-----
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc--------c--ccc-----
Confidence 6666555555555566666666666655542 111 144455555555555554432211 0 133
Q ss_pred ccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCccc
Q 046340 294 ISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFW 373 (715)
Q Consensus 294 ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 373 (715)
|++|++++|.+++..+..|.++++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 194 --------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 194 --------------------LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp --------------------CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred --------------------CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 555555555555555555555555566666655555555555555556666666666554
Q ss_pred ccCCccccCCCCCCeEeccCCcccccCCccccc------CCCCCEEeCcCccccc--ccCccccccccccceEEccCCc
Q 046340 374 GEIPSSIGNLTSLAILAFDENMLEGSIPSSLGK------CQNLILLDLSNNNLSG--TIPTEVIGLSSLSIYLDLSQNQ 444 (715)
Q Consensus 374 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~------~~~L~~L~L~~n~l~~--~~~~~~~~~~~l~~~L~Ls~n~ 444 (715)
.+|..+..+++|++|++++|++++..+..|.. .++++.|++++|++.. ..|..+..+..+ +.++|++|+
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l-~~l~L~~N~ 330 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR-AAVQLGNYK 330 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG-GGEEC----
T ss_pred -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce-eEEEecccC
Confidence 34444555566666666666665554444432 2556666666666542 233444444445 556666653
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.3e-34 Score=309.11 Aligned_cols=383 Identities=15% Similarity=0.120 Sum_probs=191.1
Q ss_pred CCCCEEEeeccccccccCc-cccCCCCCCEEEcccCcceec----CCccccCCCCCCEEEeecccCcccCCccccCCCCC
Q 046340 112 SKLWILSVHYNSLSGEIPS-SFGNLSSLEFLSAAANQFVGQ----FPETLSELKMMRYISFGENKLSGEIPFSIYNLSSL 186 (715)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 186 (715)
++|++||+++|+++..... .+..+++|++|++++|.+... .+..+..+++|++|++++|.+++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~----------- 71 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV----------- 71 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-----------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH-----------
Confidence 4566677766666533222 255566666666666665532 233344455555555555554432
Q ss_pred cEEEccCCccceecCcchhcCCC----CCCEEEeeCccccc----cCCccccCCCCCCEEEeecccceecccc------c
Q 046340 187 THFYFPFNQLQGSLPSDLGFTLP----NLEVLNVGGNQFTG----PIPASISNASNLMRLTIAKNGFSGRVPS------L 252 (715)
Q Consensus 187 ~~L~l~~n~i~~~~~~~~~~~l~----~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~L~~n~~~~~~~~------~ 252 (715)
.+..++..++ +|++|++++|.+++ .++..+..+++|++|++++|.+.+.... .
T Consensus 72 -------------~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 72 -------------GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp -------------HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 2222222233 45555555555552 2345555666666666666665432211 1
Q ss_pred cCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhh----ccccCcEEEccccceeec-
Q 046340 253 ENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGN----LSTRLRKLIVGNNQLFGN- 327 (715)
Q Consensus 253 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~----~~~~L~~L~l~~n~i~~~- 327 (715)
...++|++|++++|.++... ...+...+..+++|+.|++++|.+.+..+..+.. ..++|++|++++|.+++.
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAAS---CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp STTCCCCEEECTTSCCBGGG---HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred cCCCcceEEECCCCCCCHHH---HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 22345666666666554311 0122334455667777777777665443333322 112466666666666542
Q ss_pred ---CCccccCCCCCCEEEcCCceeeeec-----CccccCCCCccEEEccCCccccc----CCccccCCCCCCeEeccCCc
Q 046340 328 ---IPSGLRNLVNLELLHLGGNQFTGQI-----PGSIGDLHKLQWLMLPANEFWGE----IPSSIGNLTSLAILAFDENM 395 (715)
Q Consensus 328 ---~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~ 395 (715)
++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 2444555566666666666655322 12222355566666666655442 23344445555555555555
Q ss_pred ccccCCccccc-----CCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCc
Q 046340 396 LEGSIPSSLGK-----CQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLS 470 (715)
Q Consensus 396 i~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 470 (715)
+.+..+..+.. .++|++|++++|.+++..... .+..+..+++|++|++++|.++
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~---------------------l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH---------------------FSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH---------------------HHHHHHHCSSCCEEECCSSBCH
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH---------------------HHHHHhhCCCccEEEccCCccc
Confidence 54332222221 235555555555544221000 1223444556666666666655
Q ss_pred cccChhhhc-----CcccccccccCCcccc----cCcccCCCCCCCCEEeCCCCcccccCCccc-----cCCCCCCEEeC
Q 046340 471 GEIPNSLGS-----CIRLEELVMKGNFFQG----NIPSSFSSLRGMQNLDLSRNNLSGRIPKYF-----ENFFFLQNLNL 536 (715)
Q Consensus 471 ~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~~~~L~~L~l 536 (715)
+..+..+.. .++|++|++++|.+++ .++..+..+++|+.|++++|+++......+ .....|+.|++
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~ 434 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 434 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheee
Confidence 443333332 4566666666666664 445555566666666666666654321111 12335666666
Q ss_pred CCCccc
Q 046340 537 SSNHFE 542 (715)
Q Consensus 537 s~N~l~ 542 (715)
.++.+.
T Consensus 435 ~~~~~~ 440 (461)
T 1z7x_W 435 YDIYWS 440 (461)
T ss_dssp TTCCCC
T ss_pred cccccC
Confidence 666554
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.5e-30 Score=264.18 Aligned_cols=245 Identities=20% Similarity=0.251 Sum_probs=122.7
Q ss_pred CCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEc
Q 046340 288 RLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLML 367 (715)
Q Consensus 288 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 367 (715)
+++.|++++|.+.+..+..+..++. |++|++++|.+++..|..|.++++|++|++++|.++...+..+ ++|++|++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCC-CcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence 4444444444444444444444432 5555555555554445555555555555555555542222211 45555555
Q ss_pred cCCcccccCCccccCCCCCCeEeccCCcccc--cCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcc
Q 046340 368 PANEFWGEIPSSIGNLTSLAILAFDENMLEG--SIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 445 (715)
Q Consensus 368 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i 445 (715)
++|.+.+..+..|.++++|+.|++++|.++. ..+..|..+ +|+.|++++|++.+ +|..+. +.+ +.|++++|.+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L-~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETL-NELHLDHNKI 205 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSC-SCCBCCSSCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCC-CEEECCCCcC
Confidence 5555544444445555555555555555532 344444444 55555555555552 333222 233 4555555555
Q ss_pred cccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccc
Q 046340 446 NGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYF 525 (715)
Q Consensus 446 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 525 (715)
++..+..|..+++|+.|++++|++.+..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 5554455555555555555555555554545555555555555555555 344445555555555555555555554444
Q ss_pred cCC------CCCCEEeCCCCccc
Q 046340 526 ENF------FFLQNLNLSSNHFE 542 (715)
Q Consensus 526 ~~~------~~L~~L~ls~N~l~ 542 (715)
... +.|+.|++++|++.
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSC
T ss_pred cccccccccccccceEeecCccc
Confidence 332 34555555555554
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.7e-29 Score=258.42 Aligned_cols=239 Identities=18% Similarity=0.242 Sum_probs=192.9
Q ss_pred CCCcccceeeCC--------CCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCC
Q 046340 2 HFCQWKGVTCSP--------RHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHN 73 (715)
Q Consensus 2 ~~c~~~~~~~~~--------~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 73 (715)
++|.|.|+.|.. ...+|+.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|.++++|++|+|++
T Consensus 59 ~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~ 136 (328)
T 4fcg_A 59 QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLAR 136 (328)
T ss_dssp TSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEES
T ss_pred cccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCC
Confidence 468899998842 2378999999999988 66778888999999999999988 6778888999999999999
Q ss_pred CcCcccCCccccCCCCCCEEEccCCcCccCccccccC---------CCCCCEEEeeccccccccCccccCCCCCCEEEcc
Q 046340 74 NTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGS---------LSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAA 144 (715)
Q Consensus 74 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 144 (715)
|+++ .+|..+..+++|++|++++|++.+..|..+.. +++|++|++++|+++ .+|..+.++++|++|+++
T Consensus 137 n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 137 NPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214 (328)
T ss_dssp CCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEE
T ss_pred Cccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEcc
Confidence 9988 67888899999999999998887777776654 888888888888888 677778888888888888
Q ss_pred cCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCcccccc
Q 046340 145 ANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGP 224 (715)
Q Consensus 145 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 224 (715)
+|.+.++ +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+.
T Consensus 215 ~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 215 NSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp SSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCC
T ss_pred CCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhh
Confidence 8888754 44577888888888888888777787888888888888888777777777655 677888888888877777
Q ss_pred CCccccCCCCCCEEEeecccce
Q 046340 225 IPASISNASNLMRLTIAKNGFS 246 (715)
Q Consensus 225 ~~~~l~~~~~L~~L~L~~n~~~ 246 (715)
+|..+..+++++.+++..+.+.
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGSC
T ss_pred ccHHHhhccCceEEeCCHHHHH
Confidence 7777777777777777665443
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.3e-29 Score=254.73 Aligned_cols=275 Identities=24% Similarity=0.262 Sum_probs=217.6
Q ss_pred CEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeee--cCccccCCCCccEEEc
Q 046340 290 ELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQ--IPGSIGDLHKLQWLML 367 (715)
Q Consensus 290 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L 367 (715)
+.++.+++.++. +|.. .++++++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~-ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSS-CCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCccc-CCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 456666666653 3332 234588888888888866666678888888888888888743 2566677888888888
Q ss_pred cCCcccccCCccccCCCCCCeEeccCCcccccCC-cccccCCCCCEEeCcCcccccccCccccccccccceEEccCCccc
Q 046340 368 PANEFWGEIPSSIGNLTSLAILAFDENMLEGSIP-SSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN 446 (715)
Q Consensus 368 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~ 446 (715)
++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.+++.+ +.|++++|.+.
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEG
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccc
Confidence 8888864 45567888888888888888886655 578888889999999888887777777777777 78999999888
Q ss_pred c-cCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccc
Q 046340 447 G-SLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYF 525 (715)
Q Consensus 447 ~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 525 (715)
+ ..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++..|..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 6 578889999999999999999998888899999999999999999998888889999999999999999999999999
Q ss_pred cCCC-CCCEEeCCCCcccccCCCCCC---CCCCCccccCCCCCCCCccc
Q 046340 526 ENFF-FLQNLNLSSNHFEGEVPVKGV---FSNSSAISLDGNDNLCGGIS 570 (715)
Q Consensus 526 ~~~~-~L~~L~ls~N~l~~~~~~~~~---~~~~~~~~~~~n~~~c~~~~ 570 (715)
..++ +|++|++++|++.+.++..+. +.....+.+..+...|..++
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 9885 899999999999987654321 22334455556666776443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.7e-29 Score=257.34 Aligned_cols=271 Identities=18% Similarity=0.177 Sum_probs=210.4
Q ss_pred EEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcC
Q 046340 21 LRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNEL 100 (715)
Q Consensus 21 l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 100 (715)
.+.++++++.. |..+. ++|++|+|++|.+++..++.|.++++|++|++++|++++..+..|.++++|++|++++|++
T Consensus 36 c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 45677777744 55444 5899999999999988887899999999999999999988888999999999999999999
Q ss_pred ccCccccccCCCCCCEEEeeccccccccC-ccccCCCCCCEEEcccC-cceecCCccccCCCCCCEEEeecccCcccCCc
Q 046340 101 VGKVPGKLGSLSKLWILSVHYNSLSGEIP-SSFGNLSSLEFLSAAAN-QFVGQFPETLSELKMMRYISFGENKLSGEIPF 178 (715)
Q Consensus 101 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 178 (715)
++..+..|.++++|++|++++|+++...+ ..|.++++|++|++++| .+..+.+..|.++++|++|++++|.+++..|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 98777779999999999999999985444 47899999999999998 57777788899999999999999999988899
Q ss_pred cccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCcccc---CCCCCCEEEeecccceec-----cc
Q 046340 179 SIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASIS---NASNLMRLTIAKNGFSGR-----VP 250 (715)
Q Consensus 179 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~~~~L~~L~L~~n~~~~~-----~~ 250 (715)
.+..+++|++|++++|++. .+|..++..+++|+.|++++|.+++..+..+. ..+.++.++++++.+.+. ..
T Consensus 193 ~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 9999999999999999986 67776665689999999999998876544332 345667777777666531 12
Q ss_pred cccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCccccc
Q 046340 251 SLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGM 302 (715)
Q Consensus 251 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~ 302 (715)
.+..+++|+.|++++|+++.++.. .+..+++|+.|++++|.+.+.
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~-------~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDG-------IFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECCSSCBCCC
T ss_pred HHhcccCCCEEECCCCCCCccCHH-------HHhcCCCCCEEEeeCCCccCc
Confidence 255566666666666666543321 234455666666666655543
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.4e-28 Score=261.29 Aligned_cols=253 Identities=23% Similarity=0.276 Sum_probs=218.8
Q ss_pred CCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEcc
Q 046340 289 LELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLP 368 (715)
Q Consensus 289 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 368 (715)
...++.++..++. +|.. +++.++.|++++|.+++..+..|.++++|+.|+|++|.+++..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~-iP~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSS-CCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCc-cCCC---CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4556666666653 3432 33568999999999988888889999999999999999998888899999999999999
Q ss_pred CCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCc-ccccccCccccccccccceEEccCCcccc
Q 046340 369 ANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNN-NLSGTIPTEVIGLSSLSIYLDLSQNQLNG 447 (715)
Q Consensus 369 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~ 447 (715)
+|.++...+..|.++++|++|++++|.+.+..+..|..+++|+.|++++| .+....+..+.+++.+ +.|++++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCcccc
Confidence 99998888888999999999999999999888888999999999999984 4553334457777877 889999999985
Q ss_pred cCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccC
Q 046340 448 SLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFEN 527 (715)
Q Consensus 448 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 527 (715)
. ..+..+++|++|+|++|++++..|..|.++++|++|++++|++++..+..|.++++|+.|+|++|++++..++.|..
T Consensus 211 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 4 35788999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEeCCCCcccccCCCC
Q 046340 528 FFFLQNLNLSSNHFEGEVPVK 548 (715)
Q Consensus 528 ~~~L~~L~ls~N~l~~~~~~~ 548 (715)
+++|+.|++++|++.+.+...
T Consensus 289 l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp CTTCCEEECCSSCEECSTTTH
T ss_pred ccCCCEEEccCCCcCCCCCch
Confidence 999999999999999887654
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.4e-28 Score=259.45 Aligned_cols=253 Identities=25% Similarity=0.296 Sum_probs=218.3
Q ss_pred CCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEcc
Q 046340 289 LELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLP 368 (715)
Q Consensus 289 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 368 (715)
...++.++..++ .+|..+ +..++.|++++|.+.+..+..|.++++|++|+|++|.++++.+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456666666666 344333 3458899999999988888889999999999999999988888889999999999999
Q ss_pred CCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCc-ccccccCccccccccccceEEccCCcccc
Q 046340 369 ANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNN-NLSGTIPTEVIGLSSLSIYLDLSQNQLNG 447 (715)
Q Consensus 369 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~ 447 (715)
+|.++...+..|..+++|++|++++|.+....+..|..+++|+.|++++| .+....+..+.+++.+ +.|++++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCcc
Confidence 99998887778999999999999999999888888999999999999985 4543344467778887 889999999984
Q ss_pred cCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccC
Q 046340 448 SLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFEN 527 (715)
Q Consensus 448 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 527 (715)
. | .+..+++|++|+|++|++++..|..|.++++|++|++++|+++++.+..|.++++|+.|+|++|++++..++.|..
T Consensus 200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 I-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp C-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred c-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 4 3 4788999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEeCCCCcccccCCCC
Q 046340 528 FFFLQNLNLSSNHFEGEVPVK 548 (715)
Q Consensus 528 ~~~L~~L~ls~N~l~~~~~~~ 548 (715)
+++|+.|++++|+|.+.+...
T Consensus 278 l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp CTTCCEEECCSSCEECSSTTH
T ss_pred ccCCCEEEcCCCCccCCCCch
Confidence 999999999999999887654
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.3e-28 Score=247.31 Aligned_cols=250 Identities=20% Similarity=0.234 Sum_probs=166.9
Q ss_pred CcccceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccC--C
Q 046340 4 CQWKGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQI--P 81 (715)
Q Consensus 4 c~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~ 81 (715)
|.|.++.|.. ++++. +|..+. ++|++|+|++|.++++.+..|.++++|++|+|++|+++... +
T Consensus 7 C~~~~l~c~~------------~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 7 CSGTEIRCNS------------KGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp EETTEEECCS------------SCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred eCCCEEEcCC------------CCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 6787777764 23332 233222 56777777777777555555677777777777777766332 4
Q ss_pred ccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccC-ccccCCCCCCEEEcccCcceecCCccccCCC
Q 046340 82 DNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIP-SSFGNLSSLEFLSAAANQFVGQFPETLSELK 160 (715)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 160 (715)
..+..+++|++|++++|.+.. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..|..++
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred cccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 555667777777777777663 44556677777777777777764443 4567777777777777777766666677777
Q ss_pred CCCEEEeecccCcc-cCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEE
Q 046340 161 MMRYISFGENKLSG-EIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLT 239 (715)
Q Consensus 161 ~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 239 (715)
+|++|++++|.+++ ..|..+..+++|+.|++++|++++..|..+. .+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 77777777777765 4566677777777777777777644444443 667777777777777766666677777777777
Q ss_pred eecccceecccc-ccCcC-CCcEEEcccCCCCC
Q 046340 240 IAKNGFSGRVPS-LENLY-KLQWVSISHNHLGN 270 (715)
Q Consensus 240 L~~n~~~~~~~~-~~~l~-~L~~L~l~~n~l~~ 270 (715)
+++|.+.+..+. +..++ +|++|++++|.++.
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 777777765554 66663 77777777777654
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.7e-29 Score=258.32 Aligned_cols=257 Identities=18% Similarity=0.204 Sum_probs=128.6
Q ss_pred CCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEc
Q 046340 288 RLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLML 367 (715)
Q Consensus 288 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 367 (715)
+|++|++++|++++..+..+..++. |+.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCC-CCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 4445555555444433334444432 555555555555444444555555555555555555433333555555555555
Q ss_pred cCCcccccCC-ccccCCCCCCeEeccCC-cccccCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcc
Q 046340 368 PANEFWGEIP-SSIGNLTSLAILAFDEN-MLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 445 (715)
Q Consensus 368 ~~n~i~~~~~-~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i 445 (715)
++|.+.+... ..|.++++|++|++++| .+.+..+..|..+++|++|++++|++.+..|..+..++.+ +.|++++|.+
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-SHLILHMKQH 210 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-EEEEEECSCS
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC-CeecCCCCcc
Confidence 5555543333 34455555555555555 2444444445555555555555555554444444444444 4555555555
Q ss_pred cccCCcCCcCCCCCCceeccCCcCccccChhhh---cCcccccccccCCcccc----cCcccCCCCCCCCEEeCCCCccc
Q 046340 446 NGSLPPNFGILKNLGGIDISENKLSGEIPNSLG---SCIRLEELVMKGNFFQG----NIPSSFSSLRGMQNLDLSRNNLS 518 (715)
Q Consensus 446 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~ 518 (715)
.......+..+++|+.|++++|++++..+..+. ..+.++.++++++.+.+ .+|..+..+++|+.|++++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 433222333345555555555555543332221 23344444555544443 23455566666666666666666
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 519 GRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 519 ~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
.+++..|..+++|++|++++|++.+.+|
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 5554555666666666666666666554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.6e-28 Score=246.73 Aligned_cols=251 Identities=20% Similarity=0.211 Sum_probs=161.0
Q ss_pred CEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccC
Q 046340 290 ELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPA 369 (715)
Q Consensus 290 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 369 (715)
+.++.+++.++.. |.. .++.+++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~i-p~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSC-CTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccC-CcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4566666666532 322 233466666666666655555566666666666666666655555566666666666666
Q ss_pred Cc-ccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCccccc
Q 046340 370 NE-FWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGS 448 (715)
Q Consensus 370 n~-i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~ 448 (715)
|. +....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++ ++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------------------------~~~ 144 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-------------------------QAL 144 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-------------------------CCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc-------------------------ccc
Confidence 64 5444455555555555555555555555455555555555555555544 444
Q ss_pred CCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCC
Q 046340 449 LPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENF 528 (715)
Q Consensus 449 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 528 (715)
.+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..++.|..+
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 44556667777778888887776666667778888888888888887778888888888888888888887777778888
Q ss_pred CCCCEEeCCCCcccccCCCCCCCCCCCccccCCCCCCCCcc
Q 046340 529 FFLQNLNLSSNHFEGEVPVKGVFSNSSAISLDGNDNLCGGI 569 (715)
Q Consensus 529 ~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 569 (715)
++|++|++++|++.+.++..+.+..+..+....+...|..+
T Consensus 225 ~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp TTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred cccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence 88888888888888777654333333444445566666543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.3e-27 Score=256.77 Aligned_cols=248 Identities=20% Similarity=0.191 Sum_probs=213.5
Q ss_pred CeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEcc
Q 046340 17 RVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLG 96 (715)
Q Consensus 17 ~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 96 (715)
..+.++.++.+++. +|..+. +++++|+|++|.|+++.++.|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34566777777764 455443 689999999999998888999999999999999999998888999999999999999
Q ss_pred CCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEccc-CcceecCCccccCCCCCCEEEeecccCccc
Q 046340 97 VNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAA-NQFVGQFPETLSELKMMRYISFGENKLSGE 175 (715)
Q Consensus 97 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 175 (715)
+|+++.+.+..|..+++|++|+|++|+++...+..|.++++|++|++++ +.+..+.+..|.++++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9999988888899999999999999999977777899999999999998 556666667889999999999999999865
Q ss_pred CCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceecccc-ccC
Q 046340 176 IPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS-LEN 254 (715)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~ 254 (715)
| .+..+++|+.|++++|++++..|..+ ..+++|+.|++++|++++..+..|..+++|++|++++|.+.+..+. +..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGG-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -c-cccccccccEEECcCCcCcccCcccc-cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 3 57889999999999999985555544 4899999999999999988888999999999999999999877766 788
Q ss_pred cCCCcEEEcccCCCCC
Q 046340 255 LYKLQWVSISHNHLGN 270 (715)
Q Consensus 255 l~~L~~L~l~~n~l~~ 270 (715)
+++|+.|++++|.+..
T Consensus 289 l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEccCCCcCC
Confidence 9999999999998765
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=3.2e-30 Score=278.17 Aligned_cols=218 Identities=22% Similarity=0.241 Sum_probs=130.3
Q ss_pred CCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCc
Q 046340 337 NLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLS 416 (715)
Q Consensus 337 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~ 416 (715)
+|+.|+|++|.+++..|..|..+++|++|+|++|.+++..+ |..+++|++|++++|.+++.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 44444444444444444444444444444444444443332 444455555555555444322 12556666666
Q ss_pred CcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhh-cCcccccccccCCcccc
Q 046340 417 NNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLG-SCIRLEELVMKGNFFQG 495 (715)
Q Consensus 417 ~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 495 (715)
+|.+.+..+.. ++.+ +.|++++|.+++..|..|..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 108 ~N~l~~~~~~~---l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCSR---GQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEECC---CSSC-EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCccc---cCCC-CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 66655433322 2334 5666666666666666666677777777777777766666654 57777777777777775
Q ss_pred cCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCccccCCCCCCCCc
Q 046340 496 NIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVKGVFSNSSAISLDGNDNLCGG 568 (715)
Q Consensus 496 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~ 568 (715)
..+ +..+++|+.|+|++|.+++.+|. |..+++|+.|++++|.+.+.++....++++..+++.+|++.|+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 532 33467777777777777766554 67777777888887777765554455567777777888777754
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.9e-28 Score=243.28 Aligned_cols=235 Identities=20% Similarity=0.198 Sum_probs=195.0
Q ss_pred ceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCC
Q 046340 8 GVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHC 87 (715)
Q Consensus 8 ~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (715)
+..|.. ...+.++.+++++... |..+ .++|++|+|++|.+++..++.|..+++|++|++++|.+++..+..|..+
T Consensus 5 ~C~C~~--~~~~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 5 ACVCYN--EPKVTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp TCEEEC--SSSCEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CceECC--CCCeEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 556654 3447788888888754 4333 4789999999999998888889999999999999999998888899999
Q ss_pred CCCCEEEccCCc-CccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEE
Q 046340 88 VNLESLGLGVNE-LVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYIS 166 (715)
Q Consensus 88 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 166 (715)
++|++|++++|. +....+..|..+++|++|++++|++++..+..|.++++|++|++++|.+.+..+..|..+++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 999999999997 8777788899999999999999999877788889999999999999999887777888899999999
Q ss_pred eecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccce
Q 046340 167 FGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFS 246 (715)
Q Consensus 167 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~ 246 (715)
+++|.+++..+..+..+++|+.|++++|++++..|..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 999998877777788888888888888888855565554 6788888888888888766666777888888888888776
Q ss_pred ec
Q 046340 247 GR 248 (715)
Q Consensus 247 ~~ 248 (715)
..
T Consensus 239 c~ 240 (285)
T 1ozn_A 239 CD 240 (285)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4e-30 Score=287.28 Aligned_cols=447 Identities=14% Similarity=0.072 Sum_probs=270.0
Q ss_pred cccceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCC---ccCCh------------hhcCCCCCcEE
Q 046340 5 QWKGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFR---DEIPQ------------EIGYLFRLQIL 69 (715)
Q Consensus 5 ~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~------------~~~~l~~L~~L 69 (715)
+|+++.+.. -+.+.+..+ .....+..+.++++|++|+|+++..- +..|. .+..+++|++|
T Consensus 43 ~W~~~~~~~----~~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L 117 (592)
T 3ogk_B 43 RWFKIDSET----REHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSV 117 (592)
T ss_dssp HHHHHHHHH----CCEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEE
T ss_pred HHHHhhhcc----ccEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeE
Confidence 588775432 122333322 22233455677778888888765321 11111 12267788888
Q ss_pred ecCCCcCcccCCccccC-CCC-CCEEEccCCc-Ccc-CccccccCCCCCCEEEeeccccccc----cCccccCCCCCCEE
Q 046340 70 ALHNNTFGGQIPDNISH-CVN-LESLGLGVNE-LVG-KVPGKLGSLSKLWILSVHYNSLSGE----IPSSFGNLSSLEFL 141 (715)
Q Consensus 70 ~Ls~n~i~~~~~~~~~~-l~~-L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L 141 (715)
+|++|.+++..+..+.. +++ |++|++++|. +.. ..+.....+++|++|+|++|.+++. ++..+..+++|++|
T Consensus 118 ~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L 197 (592)
T 3ogk_B 118 HFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197 (592)
T ss_dssp EEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEE
T ss_pred EeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEE
Confidence 88888777655555554 333 8888888775 211 1112234677888888888877644 22344567788888
Q ss_pred EcccCcceec----CCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccc---eecCcchhcCCCCCCEE
Q 046340 142 SAAANQFVGQ----FPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQ---GSLPSDLGFTLPNLEVL 214 (715)
Q Consensus 142 ~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~---~~~~~~~~~~l~~L~~L 214 (715)
++++|.+.+. .+..+..+++|++|++++|.+.+ .+..+..+++|++|+++..... ...+..+. .+++|+.+
T Consensus 198 ~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~~L~~L 275 (592)
T 3ogk_B 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV-FPRKLCRL 275 (592)
T ss_dssp ECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC-CCTTCCEE
T ss_pred EeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh-cccccccc
Confidence 8888877632 23334567888888888887775 4566777888888888753221 11112222 56778888
Q ss_pred EeeCccccccCCccccCCCCCCEEEeecccceeccc-c-ccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEE
Q 046340 215 NVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVP-S-LENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELL 292 (715)
Q Consensus 215 ~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L 292 (715)
+++++... ..+..+..+++|++|++++|.+..... . +..+++|+.|+++ +.+.. .........+++|++|
T Consensus 276 ~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~------~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 276 GLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGD------RGLEVLAQYCKQLKRL 347 (592)
T ss_dssp EETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHH------HHHHHHHHHCTTCCEE
T ss_pred Cccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCH------HHHHHHHHhCCCCCEE
Confidence 87775333 455666777888888888877654322 2 5777888888887 33321 1122223457778888
Q ss_pred Ecc-----------CCcccccCChhHhhccccCcEEEccccceeecCCccccC-CCCCCEEEcC----Cceeeee-----
Q 046340 293 EIS-----------DNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRN-LVNLELLHLG----GNQFTGQ----- 351 (715)
Q Consensus 293 ~ls-----------~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~----~n~i~~~----- 351 (715)
+++ .+.+++.....+....++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 888 345554322232222245888888777777655555554 7788888885 5666643
Q ss_pred cCccccCCCCccEEEccCCc--ccccCCccc-cCCCCCCeEeccCCccccc-CCcccccCCCCCEEeCcCccccccc-Cc
Q 046340 352 IPGSIGDLHKLQWLMLPANE--FWGEIPSSI-GNLTSLAILAFDENMLEGS-IPSSLGKCQNLILLDLSNNNLSGTI-PT 426 (715)
Q Consensus 352 ~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~-~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~L~~n~l~~~~-~~ 426 (715)
.+..+.++++|++|+++.|. +++.....+ ..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.. +.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 22335678888888886433 444433333 3478888888888887753 3344567788888888888876432 22
Q ss_pred cccccccccceEEccCCcccccCCcCC-cCCCCCCceeccCC
Q 046340 427 EVIGLSSLSIYLDLSQNQLNGSLPPNF-GILKNLGGIDISEN 467 (715)
Q Consensus 427 ~~~~~~~l~~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n 467 (715)
....++.+ +.|++++|++++.....+ ..++.+....+..+
T Consensus 508 ~~~~l~~L-~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 508 AVTKLPSL-RYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHCSSC-CEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHhcCcc-CeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 33456666 788888888876543333 24455555444443
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.9e-30 Score=287.35 Aligned_cols=425 Identities=13% Similarity=0.042 Sum_probs=217.1
Q ss_pred ChhhcCCCCCcEEecCCCcCc---ccCCcccc------------CCCCCCEEEccCCcCccCccccccC-CC-CCCEEEe
Q 046340 57 PQEIGYLFRLQILALHNNTFG---GQIPDNIS------------HCVNLESLGLGVNELVGKVPGKLGS-LS-KLWILSV 119 (715)
Q Consensus 57 ~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~------------~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~L 119 (715)
+..+..+++|++|+|+++... +..|..++ .+++|++|+|++|.+.+..+..+.. ++ +|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 444566777888888765321 12222222 5667777777777665554444444 23 3777777
Q ss_pred eccc-ccc-ccCccccCCCCCCEEEcccCcceecCCc----cccCCCCCCEEEeecccCcc----cCCccccCCCCCcEE
Q 046340 120 HYNS-LSG-EIPSSFGNLSSLEFLSAAANQFVGQFPE----TLSELKMMRYISFGENKLSG----EIPFSIYNLSSLTHF 189 (715)
Q Consensus 120 s~n~-l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L 189 (715)
++|. ++. .++....++++|++|++++|.+.+.... .+..+++|++|++++|.+++ ..+..+..+++|+.|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 6665 221 1112233566777777777766544222 23455666666666666652 222334455666666
Q ss_pred EccCCccceecCcchhcCCCCCCEEEeeCcccc---ccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccC
Q 046340 190 YFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFT---GPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHN 266 (715)
Q Consensus 190 ~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n 266 (715)
++++|.+. .++..+. .+++|+.|+++..... ......+..+++|+.++++++........+..+++|++|++++|
T Consensus 226 ~L~~~~~~-~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEIL-ELVGFFK-AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGG-GGHHHHH-HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHH-HHHHHHh-hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence 66666555 2443322 4566666666542211 11223344455555555544322222222344444555555444
Q ss_pred CCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcC--
Q 046340 267 HLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLG-- 344 (715)
Q Consensus 267 ~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-- 344 (715)
.++.. .....+..+++ |++|+++++-.....+..+..+++|++|+++
T Consensus 304 ~l~~~------~~~~~~~~~~~-------------------------L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 304 LLETE------DHCTLIQKCPN-------------------------LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp CCCHH------HHHHHHTTCTT-------------------------CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCCHH------HHHHHHHhCcC-------------------------CCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence 43210 01111233444 5555554221111122222445555555555
Q ss_pred ---------Cceeeeec-CccccCCCCccEEEccCCcccccCCccccC-CCCCCeEecc----CCccccc-----CCccc
Q 046340 345 ---------GNQFTGQI-PGSIGDLHKLQWLMLPANEFWGEIPSSIGN-LTSLAILAFD----ENMLEGS-----IPSSL 404 (715)
Q Consensus 345 ---------~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~----~n~i~~~-----~~~~~ 404 (715)
.|.+++.. ...+..+++|++|+++.|.+++.....+.. +++|+.|+++ .|.+++. .+..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 23333221 112334566666666555555544444433 5666666664 4444432 22234
Q ss_pred ccCCCCCEEeCcCcc--cccccCccccc-cccccceEEccCCccccc-CCcCCcCCCCCCceeccCCcCccc-cChhhhc
Q 046340 405 GKCQNLILLDLSNNN--LSGTIPTEVIG-LSSLSIYLDLSQNQLNGS-LPPNFGILKNLGGIDISENKLSGE-IPNSLGS 479 (715)
Q Consensus 405 ~~~~~L~~L~L~~n~--l~~~~~~~~~~-~~~l~~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~ 479 (715)
..+++|+.|++++|. +++.....+.. ++.+ +.|++++|.+++. .+..+..+++|++|++++|.+++. .+..+..
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV-RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC-CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccc-eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 556677777775433 44333333322 3444 6777777776652 233446678888888888887654 3344567
Q ss_pred CcccccccccCCcccccCcccC-CCCCCCCEEeCCCC
Q 046340 480 CIRLEELVMKGNFFQGNIPSSF-SSLRGMQNLDLSRN 515 (715)
Q Consensus 480 l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N 515 (715)
+++|++|++++|++++.....+ ..++.+....+..+
T Consensus 512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 8888889999888876533333 35566666655544
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=252.96 Aligned_cols=248 Identities=21% Similarity=0.199 Sum_probs=215.7
Q ss_pred CeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEcc
Q 046340 17 RVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLG 96 (715)
Q Consensus 17 ~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 96 (715)
..+.++.++.+++. +|..+. +++++|+|++|.|+.+.+..|.++++|++|+|++|+++...+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34567777777774 455454 689999999999998888999999999999999999998888899999999999999
Q ss_pred CCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEccc-CcceecCCccccCCCCCCEEEeecccCccc
Q 046340 97 VNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAA-NQFVGQFPETLSELKMMRYISFGENKLSGE 175 (715)
Q Consensus 97 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 175 (715)
+|+++++.+..|..+++|++|+|++|+++...+..|.++++|++|++++ +.+..+.+..|.++++|++|++++|.++..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 9999988888899999999999999999977777899999999999998 456666667899999999999999999854
Q ss_pred CCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceecccc-ccC
Q 046340 176 IPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS-LEN 254 (715)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~ 254 (715)
| .+..+++|+.|++++|++++..|..+ ..+++|+.|++++|++++..+..|.++++|++|+|++|.++...+. +..
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhh-ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 3 48889999999999999985555444 4899999999999999998899999999999999999999987766 788
Q ss_pred cCCCcEEEcccCCCCC
Q 046340 255 LYKLQWVSISHNHLGN 270 (715)
Q Consensus 255 l~~L~~L~l~~n~l~~ 270 (715)
+++|+.|++++|.+..
T Consensus 278 l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEcCCCCccC
Confidence 9999999999998865
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1e-26 Score=231.28 Aligned_cols=217 Identities=22% Similarity=0.274 Sum_probs=180.0
Q ss_pred CCCCcccceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccC
Q 046340 1 RHFCQWKGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQI 80 (715)
Q Consensus 1 ~~~c~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 80 (715)
.+.|+|.|+.|... ..++.+++++++++. +|..+. +.+++|+|++|.+++..+..|.++++|++|+|++|+++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 47899999999764 568899999999985 455454 68999999999999888888999999999999999998777
Q ss_pred CccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCC
Q 046340 81 PDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELK 160 (715)
Q Consensus 81 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 160 (715)
+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+.++.+..|..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 77788999999999999999888888889999999999999999877777888899999999999988887777788888
Q ss_pred CCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCcccc
Q 046340 161 MMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFT 222 (715)
Q Consensus 161 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~ 222 (715)
+|++|++++|.+++..+..|..+++|+.|++++|+++ .+|...+..+++|+.|++++|.+.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 8888888888888777777777788888888888776 455554445666777777766654
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=9.8e-27 Score=237.83 Aligned_cols=225 Identities=20% Similarity=0.262 Sum_probs=171.0
Q ss_pred cCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEecc
Q 046340 313 RLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFD 392 (715)
Q Consensus 313 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 392 (715)
.++.|++++|.++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|++++|.+. .+|..+.++++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 4666666666666 34555666667777777777666 55666666677777777777665 456666667777777777
Q ss_pred CCcccccCCcccc---------cCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCcee
Q 046340 393 ENMLEGSIPSSLG---------KCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGID 463 (715)
Q Consensus 393 ~n~i~~~~~~~~~---------~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 463 (715)
+|++.+..|..+. .+++|++|++++|+++ .+|..+..++.+ +.|++++|.+++ .|..+..+++|++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 7666666665544 3788888888888887 677777777777 788888888884 455688888888888
Q ss_pred ccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccc
Q 046340 464 ISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 543 (715)
Q Consensus 464 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~ 543 (715)
+++|.+.+..|..+.++++|++|++++|.+.+.+|..|..+++|+.|+|++|++.+.+|+.+.++++|+.+++..+.+..
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 88888888888888888889999999888888888888888999999999988888888889999999999888776653
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.3e-28 Score=246.67 Aligned_cols=252 Identities=20% Similarity=0.195 Sum_probs=207.7
Q ss_pred ccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCc-ccCCcccc-------CCCCCCEEEccCCcCccCcc
Q 046340 34 PHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFG-GQIPDNIS-------HCVNLESLGLGVNELVGKVP 105 (715)
Q Consensus 34 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~ 105 (715)
..+...++|++|++++|.+ ..|..+... |+.|+|++|+++ ...+..+. ++++|++|++++|++++..|
T Consensus 37 ~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 3456778899999999999 566666554 999999999984 34565555 78999999999999998888
Q ss_pred ccc--cCCCCCCEEEeeccccccccCccccCC-----CCCCEEEcccCcceecCCccccCCCCCCEEEeecccCccc--C
Q 046340 106 GKL--GSLSKLWILSVHYNSLSGEIPSSFGNL-----SSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGE--I 176 (715)
Q Consensus 106 ~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~ 176 (715)
..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..+..|..+++|++|++++|++.+. .
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 876 8999999999999999976 7777776 8999999999999998889999999999999999997654 2
Q ss_pred Cccc--cCCCCCcEEEccCCccce--ecCcchhcCCCCCCEEEeeCccccccCC-ccccCCCCCCEEEeecccceecccc
Q 046340 177 PFSI--YNLSSLTHFYFPFNQLQG--SLPSDLGFTLPNLEVLNVGGNQFTGPIP-ASISNASNLMRLTIAKNGFSGRVPS 251 (715)
Q Consensus 177 ~~~l--~~l~~L~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~ 251 (715)
+..+ ..+++|++|++++|++++ .++..++..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++.....
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~ 271 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh
Confidence 3333 789999999999999873 3444555578999999999999997664 5667789999999999999855444
Q ss_pred ccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccc
Q 046340 252 LENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGG 301 (715)
Q Consensus 252 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~ 301 (715)
+. ++|++|++++|+++.++ .+..+++|+.|++++|.+++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~p---------~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRNP---------SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSCC---------CTTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCCh---------hHhhCCCCCEEeccCCCCCC
Confidence 54 89999999999998742 25678999999999999875
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.2e-28 Score=246.05 Aligned_cols=248 Identities=21% Similarity=0.222 Sum_probs=181.1
Q ss_pred ccCCCCCEEEccCCcccccCChhHhhccccCcEEEcccccee-ecCCcccc-------CCCCCCEEEcCCceeeeecCcc
Q 046340 284 VNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLF-GNIPSGLR-------NLVNLELLHLGGNQFTGQIPGS 355 (715)
Q Consensus 284 ~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~ 355 (715)
...++|+.+++++|.+ .+|..+... ++.|++++|.+. ...+..+. ++++|++|++++|.+++..|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3445677777777777 556555543 777788888774 33444443 6788888888888888766665
Q ss_pred c--cCCCCccEEEccCCcccccCCccccCC-----CCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccc--cCc
Q 046340 356 I--GDLHKLQWLMLPANEFWGEIPSSIGNL-----TSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGT--IPT 426 (715)
Q Consensus 356 ~--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~ 426 (715)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..|..+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 7888888888888888766 6666666 7888888888888877778888888888888888887643 222
Q ss_pred cc--cccccccceEEccCCccccc---CCcCCcCCCCCCceeccCCcCccccC-hhhhcCcccccccccCCcccccCccc
Q 046340 427 EV--IGLSSLSIYLDLSQNQLNGS---LPPNFGILKNLGGIDISENKLSGEIP-NSLGSCIRLEELVMKGNFFQGNIPSS 500 (715)
Q Consensus 427 ~~--~~~~~l~~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 500 (715)
.+ ..++.+ +.|++++|++++. ....+..+++|++|++++|++++..| ..+..+++|++|++++|.++ .+|..
T Consensus 194 ~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 194 ALCPLKFPTL-QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HSCTTSCTTC-CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHhccCCCC-CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 22 556666 7788888887732 22344567888888888888887664 45566788888888888888 55555
Q ss_pred CCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccc
Q 046340 501 FSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 543 (715)
Q Consensus 501 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~ 543 (715)
+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 55 7888888888888877 44 7888888888888888864
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-27 Score=240.89 Aligned_cols=259 Identities=17% Similarity=0.151 Sum_probs=133.9
Q ss_pred eEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccC
Q 046340 18 VTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGV 97 (715)
Q Consensus 18 v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 97 (715)
.+-.+++.+.+...+...+..+++|++|+|++|.+++..++.|.++++|++|+|++|++++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4444555555554445555556666666666666666555666666666666666666654332 55666666666666
Q ss_pred CcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCC
Q 046340 98 NELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIP 177 (715)
Q Consensus 98 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 177 (715)
|.+++.. ..++|++|++++|++++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 6554322 2255555555555555333222 3445555555555554444444444555555555554444433
Q ss_pred ccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCC
Q 046340 178 FSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYK 257 (715)
Q Consensus 178 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~ 257 (715)
. .++..+++|+.|++++|.+++.. ....+++|++|++++|.+.+..+.+..+++
T Consensus 162 ~------------------------~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 162 A------------------------ELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (317)
T ss_dssp G------------------------GGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred H------------------------HHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchhhhcccCc
Confidence 3 33323444555555555444331 122345555555555555544444555555
Q ss_pred CcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCccc-ccCChhHhhccccCcEEEccc
Q 046340 258 LQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFG-GMLPEAVGNLSTRLRKLIVGN 321 (715)
Q Consensus 258 L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~-~~~~~~~~~~~~~L~~L~l~~ 321 (715)
|+.|++++|.++.++ ..+..+++|+.|++++|.+. +..+..+..++. |+.+++++
T Consensus 216 L~~L~L~~N~l~~l~--------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~-L~~l~l~~ 271 (317)
T 3o53_A 216 VTWISLRNNKLVLIE--------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR-VQTVAKQT 271 (317)
T ss_dssp CSEEECTTSCCCEEC--------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH-HHHHHHHH
T ss_pred ccEEECcCCcccchh--------hHhhcCCCCCEEEccCCCccCcCHHHHHhcccc-ceEEECCC
Confidence 555555555554321 12344556666666666655 444455554433 55555553
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.2e-28 Score=275.63 Aligned_cols=111 Identities=10% Similarity=0.042 Sum_probs=55.1
Q ss_pred cccCCCCCEEeCcCcccccccCccccc-cccccceEEccCCcccccCCcCC-cCCCCCCceeccCCcCccccCh-hhhcC
Q 046340 404 LGKCQNLILLDLSNNNLSGTIPTEVIG-LSSLSIYLDLSQNQLNGSLPPNF-GILKNLGGIDISENKLSGEIPN-SLGSC 480 (715)
Q Consensus 404 ~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l 480 (715)
+..+++|+.|++++ .+++.....+.. ++.+ +.|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L-~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM-EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC-CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhc-cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence 34455555555544 333322222222 3334 555555555544333323 4456666677776666433322 23446
Q ss_pred cccccccccCCcccccCcccC-CCCCCCCEEeCCCCc
Q 046340 481 IRLEELVMKGNFFQGNIPSSF-SSLRGMQNLDLSRNN 516 (715)
Q Consensus 481 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~ 516 (715)
++|++|++++|.++......+ ..++.|+...+..+.
T Consensus 506 ~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 506 ETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp GGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 667777777776643322223 345566555555443
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.4e-29 Score=279.09 Aligned_cols=225 Identities=15% Similarity=0.047 Sum_probs=127.8
Q ss_pred CcEEEccccceeecCC-ccccCCCCCCEEEcCCceeeee-cCccccCCCCccEEEcc---------CCcccccCCccc-c
Q 046340 314 LRKLIVGNNQLFGNIP-SGLRNLVNLELLHLGGNQFTGQ-IPGSIGDLHKLQWLMLP---------ANEFWGEIPSSI-G 381 (715)
Q Consensus 314 L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~---------~n~i~~~~~~~~-~ 381 (715)
|++|++++|.+++... ..+..+++|+.|++++| +.+. .+.....+++|++|+++ .+.+++.....+ .
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 4444444444332211 11334555555555555 3211 11122235556666552 233333222222 2
Q ss_pred CCCCCCeEeccCCcccccCCcccc-cCCCCCEEeCc--C----cccccc-----cCccccccccccceEEccCCcccccC
Q 046340 382 NLTSLAILAFDENMLEGSIPSSLG-KCQNLILLDLS--N----NNLSGT-----IPTEVIGLSSLSIYLDLSQNQLNGSL 449 (715)
Q Consensus 382 ~l~~L~~L~l~~n~i~~~~~~~~~-~~~~L~~L~L~--~----n~l~~~-----~~~~~~~~~~l~~~L~Ls~n~i~~~~ 449 (715)
++++|+.|.+..|.+++.....+. .+++|+.|+++ + +.+++. ++..+..++.+ +.|++++ .+++..
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L-~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL-RRLSLSG-LLTDKV 447 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC-CEEECCS-SCCHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc-cEEeecC-cccHHH
Confidence 366777776666666654444443 46777777777 3 344411 11123455666 7888877 666544
Q ss_pred CcCCcC-CCCCCceeccCCcCccccChhh-hcCcccccccccCCcccccCcc-cCCCCCCCCEEeCCCCcccccCCccc-
Q 046340 450 PPNFGI-LKNLGGIDISENKLSGEIPNSL-GSCIRLEELVMKGNFFQGNIPS-SFSSLRGMQNLDLSRNNLSGRIPKYF- 525 (715)
Q Consensus 450 ~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~- 525 (715)
+..+.. +++|+.|++++|.+++..+..+ .++++|++|++++|.+++.... .+..+++|+.|++++|+++......+
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 527 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG 527 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH
Confidence 444444 7889999999998876555554 6688899999999988654433 33457889999999988854433333
Q ss_pred cCCCCCCEEeCCCCcc
Q 046340 526 ENFFFLQNLNLSSNHF 541 (715)
Q Consensus 526 ~~~~~L~~L~ls~N~l 541 (715)
..++.++...+..+.-
T Consensus 528 ~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 528 QKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHCTTEEEEEECSSSC
T ss_pred HhCCCCEEEEecCCCc
Confidence 4567776666665543
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-27 Score=243.00 Aligned_cols=235 Identities=16% Similarity=0.165 Sum_probs=196.4
Q ss_pred CCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEc
Q 046340 16 QRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 95 (715)
.+++.|++++|.+++..+..|..+++|++|+|++|.+++..+ |..+++|++|++++|++++.. ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEEC
Confidence 589999999999999888999999999999999999987654 999999999999999998543 4489999999
Q ss_pred cCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccc-cCCCCCCEEEeecccCcc
Q 046340 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETL-SELKMMRYISFGENKLSG 174 (715)
Q Consensus 96 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~L~~n~i~~ 174 (715)
++|++.+..+.. +++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++
T Consensus 107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 999998766543 6789999999999998778889999999999999999998877776 478999999999999987
Q ss_pred cCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccce-ecccc-c
Q 046340 175 EIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFS-GRVPS-L 252 (715)
Q Consensus 175 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~-~~~~~-~ 252 (715)
.. ....+++|+.|++++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +..+. +
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 184 VK--GQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EE--CCCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cc--cccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 63 2335889999999999998 5555544 68889999999998884 5667788888888888888887 33333 6
Q ss_pred cCcCCCcEEEccc
Q 046340 253 ENLYKLQWVSISH 265 (715)
Q Consensus 253 ~~l~~L~~L~l~~ 265 (715)
..+++|+.++++.
T Consensus 259 ~~~~~L~~l~l~~ 271 (317)
T 3o53_A 259 SKNQRVQTVAKQT 271 (317)
T ss_dssp HTCHHHHHHHHHH
T ss_pred hccccceEEECCC
Confidence 6666666666663
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.6e-25 Score=244.35 Aligned_cols=269 Identities=24% Similarity=0.209 Sum_probs=172.1
Q ss_pred CCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEc
Q 046340 16 QRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 95 (715)
.+++.|++++++++ .+|..+. ++|++|+|++|.|+.+.+ .+++|++|+|++|+++. +|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 46788888888887 5565554 788888888888875433 46778888888888773 343 5677778888
Q ss_pred cCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCccc
Q 046340 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGE 175 (715)
Q Consensus 96 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 175 (715)
++|.++++.. .+++|+.|++++|+++. +|.. +++|++|++++|.++++.. .+++|+.|++++|.++.+
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCC
Confidence 8777765433 45677777777777763 3432 3667777777776664321 235566666666666642
Q ss_pred CCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCc
Q 046340 176 IPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENL 255 (715)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l 255 (715)
| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .... .+
T Consensus 177 -~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~------------------------~l~~---~~ 220 (622)
T 3g06_A 177 -P---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT------------------------SLPA---LP 220 (622)
T ss_dssp -C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS------------------------SCCC---CC
T ss_pred -c---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc------------------------ccCC---CC
Confidence 2 33455566666666555 3332 2345555555555544 2221 12
Q ss_pred CCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCC
Q 046340 256 YKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNL 335 (715)
Q Consensus 256 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 335 (715)
++|+.|++++|.++.++ ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|..+.++
T Consensus 221 ~~L~~L~Ls~N~L~~lp-----------~~l~~L~~L~Ls~N~L~~-lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP-----------VLPSELKELMVSGNRLTS-LPM----LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp TTCCEEECCSSCCSCCC-----------CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred CCCCEEEccCCccCcCC-----------CCCCcCcEEECCCCCCCc-CCc----ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 45666666666555432 234667777777777764 333 2345888888888888 557778889
Q ss_pred CCCCEEEcCCceeeeecCccccCCC
Q 046340 336 VNLELLHLGGNQFTGQIPGSIGDLH 360 (715)
Q Consensus 336 ~~L~~L~L~~n~i~~~~~~~~~~l~ 360 (715)
++|+.|+|++|.+++..+..+..++
T Consensus 284 ~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999999999998877776665443
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3e-25 Score=221.80 Aligned_cols=210 Identities=22% Similarity=0.239 Sum_probs=148.3
Q ss_pred ccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEec
Q 046340 312 TRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAF 391 (715)
Q Consensus 312 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 391 (715)
..+++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34666666666666655556666666666666666666555556666666666666666665555555666666666666
Q ss_pred cCCcccccCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCccccc-CCcCCcCCCCCCceeccCCcCc
Q 046340 392 DENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGS-LPPNFGILKNLGGIDISENKLS 470 (715)
Q Consensus 392 ~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~ 470 (715)
++|.+.+..+..+..+++|++|++++|++. +. .|..|..+++|++|++++|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQ-------------------------SFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCC-------------------------CCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccc-------------------------eecCchhhccCCCCCEEECCCCCCC
Confidence 666665554445555555555555555554 32 3556677778888888888887
Q ss_pred cccChhhhcCcccc----cccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 471 GEIPNSLGSCIRLE----ELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 471 ~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
+..+..+..+++|+ +|++++|.+++..+..+.. .+|+.|++++|.+++.++..|..+++|++|++++|++.+.++
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 77667777777766 7889999998777766654 489999999999998888889999999999999999998886
Q ss_pred C
Q 046340 547 V 547 (715)
Q Consensus 547 ~ 547 (715)
.
T Consensus 242 ~ 242 (276)
T 2z62_A 242 R 242 (276)
T ss_dssp T
T ss_pred c
Confidence 4
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.5e-24 Score=238.18 Aligned_cols=265 Identities=23% Similarity=0.228 Sum_probs=136.8
Q ss_pred CCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEee
Q 046340 41 FLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVH 120 (715)
Q Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 120 (715)
.+++|++++|.++ .+|..+. ++|++|+|++|.++. +|. .+++|++|+|++|+++++. . .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCC-C---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCC-C---CCCCCCEEECc
Confidence 4777777777777 3444443 677777777777763 333 4566777777777665432 2 45666666666
Q ss_pred ccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceec
Q 046340 121 YNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSL 200 (715)
Q Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 200 (715)
+|++++ +|. .+++|+.|++++|.++.+.. .+++|++|++++|.+++ +
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-------------------------l 156 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-------------------------L 156 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-------------------------C
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCC-------------------------c
Confidence 666663 222 34556666666655554221 12445555555554443 2
Q ss_pred CcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCCCccccc
Q 046340 201 PSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFV 280 (715)
Q Consensus 201 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 280 (715)
|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+.+... ..++|+.|++++|.++.++.
T Consensus 157 ~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~~------- 218 (622)
T 3g06_A 157 PA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLTSLPA------- 218 (622)
T ss_dssp CC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCC-------
T ss_pred CC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCcccccCC-------
Confidence 21 12344555555554443 22 223445555555554443221 12456666666666554321
Q ss_pred cccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCC
Q 046340 281 NSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLH 360 (715)
Q Consensus 281 ~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 360 (715)
.+++|+.|++++|.++ + +| ..+++|+.|++++|.++.+ |. .++
T Consensus 219 ----~~~~L~~L~Ls~N~L~-------------------------~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~ 261 (622)
T 3g06_A 219 ----LPSGLKELIVSGNRLT-------------------------S-LP---VLPSELKELMVSGNRLTSL-PM---LPS 261 (622)
T ss_dssp ----CCTTCCEEECCSSCCS-------------------------C-CC---CCCTTCCEEECCSSCCSCC-CC---CCT
T ss_pred ----CCCCCCEEEccCCccC-------------------------c-CC---CCCCcCcEEECCCCCCCcC-Cc---ccc
Confidence 1244555555555444 3 22 2334555555555555532 22 345
Q ss_pred CccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccc
Q 046340 361 KLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLG 405 (715)
Q Consensus 361 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 405 (715)
+|++|++++|.++ .+|..|.++++|+.|++++|++.+..+..+.
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 5555555555554 3344555555555555555555555444443
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.9e-26 Score=245.46 Aligned_cols=215 Identities=21% Similarity=0.177 Sum_probs=133.5
Q ss_pred cCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEecc
Q 046340 313 RLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFD 392 (715)
Q Consensus 313 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 392 (715)
+|+.|++++|.+++..|..|..+++|+.|+|++|.+++..+ |..+++|++|++++|.+++.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 36666666666665555556666666666666666654443 566666666666666654432 22566666666
Q ss_pred CCcccccCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCc-CCCCCCceeccCCcCcc
Q 046340 393 ENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFG-ILKNLGGIDISENKLSG 471 (715)
Q Consensus 393 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~ 471 (715)
+|.+.+..+. .+++|+.|++++|.+.+..|..+..++.+ +.|+|++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 6666654433 24566666666666665555555556665 5666666666665555554 56677777777777665
Q ss_pred ccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccc
Q 046340 472 EIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE 542 (715)
Q Consensus 472 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~ 542 (715)
..+ +..+++|+.|+|++|.+++.++. |..+++|+.|++++|.++++ |..+..+++|+.|++++|++.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBC
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCc
Confidence 432 23466777777777777755443 66677777777777777753 445666777777777777776
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.7e-25 Score=219.71 Aligned_cols=209 Identities=19% Similarity=0.175 Sum_probs=170.6
Q ss_pred CCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEe
Q 046340 40 SFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSV 119 (715)
Q Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 119 (715)
++|++|+|++|.+++..+..|.++++|++|++++|+++...+..|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47888888888888777778888888888888888888777778888888888888888888777788888888888888
Q ss_pred eccccccccCccccCCCCCCEEEcccCcceec-CCccccCCCCCCEEEeecccCcccCCccccCCCCCc----EEEccCC
Q 046340 120 HYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQ-FPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLT----HFYFPFN 194 (715)
Q Consensus 120 s~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~----~L~l~~n 194 (715)
++|++++..+..+..+++|++|++++|.+.+. .|..|..+++|++|++++|.+++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888866666788888888888888888764 477888888888888888888877777777776666 8888999
Q ss_pred ccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccc
Q 046340 195 QLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVP 250 (715)
Q Consensus 195 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~ 250 (715)
.++ .++...+ ...+|+.|++++|++++..+..+..+++|++|++++|.+....+
T Consensus 188 ~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 887 4555544 34589999999999887777778889999999999998876543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.1e-24 Score=213.34 Aligned_cols=205 Identities=22% Similarity=0.263 Sum_probs=135.0
Q ss_pred CcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccC
Q 046340 314 LRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDE 393 (715)
Q Consensus 314 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 393 (715)
.+.++++++.++. +|..+. ++++.|++++|.+++..+..|..+++|++|++++|.++...+..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4555555555553 232222 3455555555555544444555555555555555555444444444445555555555
Q ss_pred CcccccCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCcccc
Q 046340 394 NMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEI 473 (715)
Q Consensus 394 n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 473 (715)
|.+.+..+..|..+++|+ .|++++|.+++..+..|..+++|++|++++|++.+..
T Consensus 95 n~l~~~~~~~~~~l~~L~-------------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLA-------------------------ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SCCCCCCTTTTTTCSSCC-------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCcCCHhHcccccCCC-------------------------EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 544444444444444444 4555555555455566777888888888888888777
Q ss_pred ChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 474 PNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 474 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+.++
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 7778888888888888888888777788888999999999999988888888888999999999998887665
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.3e-23 Score=210.37 Aligned_cols=205 Identities=23% Similarity=0.212 Sum_probs=115.8
Q ss_pred ccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCC
Q 046340 332 LRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLI 411 (715)
Q Consensus 332 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 411 (715)
++++++++++++++|.++.+.+ .+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4455666666666666663322 221 4566666666666666666666666666666666666644332 4566666
Q ss_pred EEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCC
Q 046340 412 LLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGN 491 (715)
Q Consensus 412 ~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 491 (715)
.|++++|++. .+|..+.+++.+ +.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 6666666665 444444444444 45555555555444455555556666666666655555555555555666666666
Q ss_pred cccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 046340 492 FFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE 544 (715)
Q Consensus 492 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 544 (715)
+++++.+..|..+++|+.|+|++|+++.+ |..+...+.|+.+++++|++.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCCS
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccCc
Confidence 55555555555555566666666655533 33333344555555555555443
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.3e-23 Score=206.36 Aligned_cols=190 Identities=21% Similarity=0.189 Sum_probs=167.1
Q ss_pred CCCcccceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCC
Q 046340 2 HFCQWKGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIP 81 (715)
Q Consensus 2 ~~c~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (715)
+||.|.|+.|.. ..+.+++++++++. +|..+. +++++|+|++|.+++..+..|.++++|++|+|++|++++..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 567899999963 56789999999985 455554 689999999999999888899999999999999999998888
Q ss_pred ccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCC
Q 046340 82 DNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKM 161 (715)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 161 (715)
..|..+++|++|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+.++.+..|..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88999999999999999999888888999999999999999999777777889999999999999999888878899999
Q ss_pred CCEEEeecccCcccCCccccCCCCCcEEEccCCccc
Q 046340 162 MRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQ 197 (715)
Q Consensus 162 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~ 197 (715)
|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 999999999999887778888888888888888876
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.2e-23 Score=208.82 Aligned_cols=206 Identities=25% Similarity=0.196 Sum_probs=182.7
Q ss_pred cccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccccCccccccccc
Q 046340 355 SIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSL 434 (715)
Q Consensus 355 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l 434 (715)
.+..++++++++++++.++...+ .+. ++++.|++++|.+.+..+..|..+++|+.|++++|.+++..+. ..++.+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 46788999999999999975543 332 6899999999999998889999999999999999999854332 567777
Q ss_pred cceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCC
Q 046340 435 SIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSR 514 (715)
Q Consensus 435 ~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 514 (715)
+.|++++|.++ ..|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+.|+|++
T Consensus 80 -~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 -GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp -CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred -CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 89999999999 5677889999999999999999988889999999999999999999999899999999999999999
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCccccCCCCCCCC
Q 046340 515 NNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVKGVFSNSSAISLDGNDNLCG 567 (715)
Q Consensus 515 N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~ 567 (715)
|+++.++++.|..+++|+.|++++|+++..++......++..+++.+|||.|+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 99999988999999999999999999996555444455789999999999996
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.2e-23 Score=207.32 Aligned_cols=220 Identities=21% Similarity=0.216 Sum_probs=156.3
Q ss_pred EcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCc
Q 046340 22 RLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELV 101 (715)
Q Consensus 22 ~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 101 (715)
++..+.+.+. .....+++|++|++++|.++.. ..+..+++|++|++++|.+++ ...+..+++|++|++++|.+.
T Consensus 25 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 25 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCC
T ss_pred HhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccC
Confidence 3344444433 3355677778888888777643 347777888888888887764 246777778888888888777
Q ss_pred cCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCcccc
Q 046340 102 GKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIY 181 (715)
Q Consensus 102 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~ 181 (715)
+..+..|..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 77777777778888888888877766666677778888888888877777777777778888888888887777666677
Q ss_pred CCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceecccc-ccCc
Q 046340 182 NLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPS-LENL 255 (715)
Q Consensus 182 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~l 255 (715)
.+++|+.|++++|++++ ++...+..+++|+.|++++|.+.+ .+++++.++++.|.+.+..|. ++.+
T Consensus 179 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 77888888888887773 444444467788888888886653 355677777777777766654 4443
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.9e-23 Score=201.50 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=146.8
Q ss_pred CCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCc-CcccCCccccCCCCCCEEEccC-CcCccCccccccCCCCCCEE
Q 046340 40 SFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNT-FGGQIPDNISHCVNLESLGLGV-NELVGKVPGKLGSLSKLWIL 117 (715)
Q Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 117 (715)
++|++|+|++|+++++.+..|.++++|++|++++|+ ++.+.+..|.++++|++|++++ |.++++.+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 388899999999988877788889999999999886 8877777888888888888888 88887777888888888888
Q ss_pred EeeccccccccCccccCCCCCC---EEEcccC-cceecCCccccCCCCCC-EEEeecccCcccCCccccCCCCCcEEEcc
Q 046340 118 SVHYNSLSGEIPSSFGNLSSLE---FLSAAAN-QFVGQFPETLSELKMMR-YISFGENKLSGEIPFSIYNLSSLTHFYFP 192 (715)
Q Consensus 118 ~Ls~n~l~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 192 (715)
++++|++++ +|. |..+++|+ +|++++| .+.++.+..|.++++|+ +|++++|.++.+.+..+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 888888885 554 77777777 8888888 77777777777777888 8888887777554444444 677777777
Q ss_pred CCc-cceecCcchhcCC-CCCCEEEeeCccccccCCccccCCCCCCEEEeecc
Q 046340 193 FNQ-LQGSLPSDLGFTL-PNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKN 243 (715)
Q Consensus 193 ~n~-i~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n 243 (715)
+|+ ++ .++...+..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 188 ~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 774 66 5555544456 6777777777776643222 4556666665543
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.3e-23 Score=204.01 Aligned_cols=203 Identities=21% Similarity=0.204 Sum_probs=102.4
Q ss_pred CCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEc
Q 046340 16 QRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 95 (715)
..++.|+++++.+.. ...++.+++|++|+|++|.+++. ..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 345555555554442 22345555555555555555432 24555555555555555555444444555555555555
Q ss_pred cCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCccc
Q 046340 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGE 175 (715)
Q Consensus 96 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 175 (715)
++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 55555544444455555555555555555544444445555555555555555544444455555555555555555554
Q ss_pred CCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCcccc
Q 046340 176 IPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASIS 230 (715)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 230 (715)
.+..+..+++|+.|++++|.+.+ .+++|+.+++..|.+++.+|..++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCccc
Confidence 44445555555555555554431 233444555555555555544443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=5.4e-23 Score=200.50 Aligned_cols=197 Identities=17% Similarity=0.136 Sum_probs=179.3
Q ss_pred CCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCC-CCccCChhhcCCCCCcEEecCC-CcCcccCCccccCCCCCCEE
Q 046340 16 QRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNS-FRDEIPQEIGYLFRLQILALHN-NTFGGQIPDNISHCVNLESL 93 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L 93 (715)
..++.|++++|.+++..+..|.++++|++|++++|. ++.+.+..|.++++|++|++++ |+++...+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 589999999999999888899999999999999997 9988888999999999999998 99998888899999999999
Q ss_pred EccCCcCccCccccccCCCCCC---EEEeecc-ccccccCccccCCCCCC-EEEcccCcceecCCccccCCCCCCEEEee
Q 046340 94 GLGVNELVGKVPGKLGSLSKLW---ILSVHYN-SLSGEIPSSFGNLSSLE-FLSAAANQFVGQFPETLSELKMMRYISFG 168 (715)
Q Consensus 94 ~L~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 168 (715)
++++|.+++ .|. |..+++|+ .|++++| ++++..+..|.++++|+ +|++++|.++.+.+..|.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999986 454 88899998 9999999 99977777899999999 9999999999777777776 899999999
Q ss_pred ccc-CcccCCccccCC-CCCcEEEccCCccceecCcchhcCCCCCCEEEeeCc
Q 046340 169 ENK-LSGEIPFSIYNL-SSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGN 219 (715)
Q Consensus 169 ~n~-i~~~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n 219 (715)
+|+ ++...+..|..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 995 998888889999 99999999999998 66665 5789999999876
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.1e-24 Score=223.10 Aligned_cols=266 Identities=17% Similarity=0.161 Sum_probs=179.2
Q ss_pred EEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCC----hhhcCCC-CCcEEecCCCcCcccCCccccCC-----CC
Q 046340 20 GLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIP----QEIGYLF-RLQILALHNNTFGGQIPDNISHC-----VN 89 (715)
Q Consensus 20 ~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~~ 89 (715)
..+++.+++++.+|..+...++|++|||++|.+++..+ +.|.+++ +|++|+|++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788889998888888887889999999999987776 7788888 89999999999987777777664 88
Q ss_pred CCEEEccCCcCccCccccc----cCC-CCCCEEEeeccccccccCccc----cC-CCCCCEEEcccCcceecCCc----c
Q 046340 90 LESLGLGVNELVGKVPGKL----GSL-SKLWILSVHYNSLSGEIPSSF----GN-LSSLEFLSAAANQFVGQFPE----T 155 (715)
Q Consensus 90 L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~~~----~ 155 (715)
|++|+|++|.+.+..+..+ ..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+.+.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999887766644 344 789999999998876555443 33 35888888888888754333 3
Q ss_pred ccCCC-CCCEEEeecccCcccCCcccc----CC-CCCcEEEccCCcccee----cCcchhcCCCCCCEEEeeCccccccC
Q 046340 156 LSELK-MMRYISFGENKLSGEIPFSIY----NL-SSLTHFYFPFNQLQGS----LPSDLGFTLPNLEVLNVGGNQFTGPI 225 (715)
Q Consensus 156 l~~l~-~L~~L~L~~n~i~~~~~~~l~----~l-~~L~~L~l~~n~i~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~ 225 (715)
+..++ +|++|++++|.+++..+..+. .+ ++|+.|++++|.+.+. ++..+....++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34554 788888888888766554433 33 4777888877777632 33333322456777777777666433
Q ss_pred C----ccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccc
Q 046340 226 P----ASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGG 301 (715)
Q Consensus 226 ~----~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~ 301 (715)
+ ..+..+++|++|++++|.+. .+...........+..+++|+.|++++|.+.+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~-----------------------~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVK-----------------------NMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHT-----------------------TCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHhcCCCccEEEeccCCcc-----------------------ccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 2 22344455555555555532 22211111223345566777777777777776
Q ss_pred cCChhHh
Q 046340 302 MLPEAVG 308 (715)
Q Consensus 302 ~~~~~~~ 308 (715)
..+..+.
T Consensus 299 ~~~~~~~ 305 (362)
T 3goz_A 299 SHSIPIS 305 (362)
T ss_dssp GGCHHHH
T ss_pred cchHHHH
Confidence 6554443
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=9.7e-24 Score=219.37 Aligned_cols=264 Identities=12% Similarity=0.083 Sum_probs=166.3
Q ss_pred EEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCC----ccccCCC-CCCEEEccCCcCccCccccccCC-----CC
Q 046340 44 VLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIP----DNISHCV-NLESLGLGVNELVGKVPGKLGSL-----SK 113 (715)
Q Consensus 44 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 113 (715)
++++++|.+++..|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888777766767779999999998887666 6777888 88888888888887777766654 88
Q ss_pred CCEEEeeccccccccCcc----ccCC-CCCCEEEcccCcceecCCccc----cC-CCCCCEEEeecccCcccCCcc----
Q 046340 114 LWILSVHYNSLSGEIPSS----FGNL-SSLEFLSAAANQFVGQFPETL----SE-LKMMRYISFGENKLSGEIPFS---- 179 (715)
Q Consensus 114 L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~l----~~-l~~L~~L~L~~n~i~~~~~~~---- 179 (715)
|++|+|++|++++..+.. +..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+++..+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888887555443 3344 678888888887766555443 23 246777777777666433222
Q ss_pred ccCCC-CCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCC-CCCCEEEeeccccee-----ccccc
Q 046340 180 IYNLS-SLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNA-SNLMRLTIAKNGFSG-----RVPSL 252 (715)
Q Consensus 180 l~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~-~~L~~L~L~~n~~~~-----~~~~~ 252 (715)
+..++ +|++|++++|++++..+..+. ..+..+ ++|++|++++|.+.. ....+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~---------------------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELA---------------------KFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHH---------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHH---------------------HHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 22333 555555555555432222111 112223 355555555555543 11223
Q ss_pred cC-cCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChh-------HhhccccCcEEEccccce
Q 046340 253 EN-LYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEA-------VGNLSTRLRKLIVGNNQL 324 (715)
Q Consensus 253 ~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~-------~~~~~~~L~~L~l~~n~i 324 (715)
.. .++|++|++++|.++..... .+...+..+++|+.|++++|.+.+..+.. +..+ ++|+.|++++|.+
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~---~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l-~~L~~LdL~~N~l 296 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLE---NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI-QKIILVDKNGKEI 296 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHH---HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC-CEEEEECTTSCBC
T ss_pred hcCCCCceEEECcCCCCCcHHHH---HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC-CceEEEecCCCcC
Confidence 33 34677777777776553211 22334567788999999999865444332 2333 3499999999999
Q ss_pred eecCCccc
Q 046340 325 FGNIPSGL 332 (715)
Q Consensus 325 ~~~~~~~~ 332 (715)
.+..+..+
T Consensus 297 ~~~~~~~~ 304 (362)
T 3goz_A 297 HPSHSIPI 304 (362)
T ss_dssp CGGGCHHH
T ss_pred CCcchHHH
Confidence 86644433
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.2e-24 Score=221.19 Aligned_cols=208 Identities=16% Similarity=0.191 Sum_probs=132.0
Q ss_pred cccceeeCCCCCCeEEEEcCCCCCCcccCccccCC--CCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCccc-CC
Q 046340 5 QWKGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNL--SFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQ-IP 81 (715)
Q Consensus 5 ~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~ 81 (715)
+|+++.+.+ ..++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. .+
T Consensus 38 ~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 38 RWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp HHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred HHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence 588888764 56788888887766 4556666 7788888888877765544 45677788888887777654 56
Q ss_pred ccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeecc-ccccc-cCccccCCCCCCEEEcccC-cceec-CCcccc
Q 046340 82 DNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYN-SLSGE-IPSSFGNLSSLEFLSAAAN-QFVGQ-FPETLS 157 (715)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~ 157 (715)
..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. .+..+.
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 66777777777777777776666667777777777777777 45542 4445666777777777777 66543 344455
Q ss_pred CCC-CCCEEEeecc--cCc-ccCCccccCCCCCcEEEccCCc-cceecCcchhcCCCCCCEEEeeCc
Q 046340 158 ELK-MMRYISFGEN--KLS-GEIPFSIYNLSSLTHFYFPFNQ-LQGSLPSDLGFTLPNLEVLNVGGN 219 (715)
Q Consensus 158 ~l~-~L~~L~L~~n--~i~-~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~L~~n 219 (715)
.++ +|++|++++| .++ ...+..+..+++|+.|++++|. +++..+..+. .+++|+.|++++|
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~ 257 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRC 257 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCC
Confidence 566 6666666666 333 2233344455555555555555 3333333332 3455555555554
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=206.42 Aligned_cols=229 Identities=19% Similarity=0.182 Sum_probs=121.9
Q ss_pred CCCCCEEEccCCcccccCChh---HhhccccCcEEEccccceeecCCccc--cCCCCCCEEEcCCceeeeecC----ccc
Q 046340 286 ASRLELLEISDNNFGGMLPEA---VGNLSTRLRKLIVGNNQLFGNIPSGL--RNLVNLELLHLGGNQFTGQIP----GSI 356 (715)
Q Consensus 286 ~~~L~~L~ls~n~i~~~~~~~---~~~~~~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~ 356 (715)
...++.+.+.++.+....... +... ++|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 345667777666654321111 1112 236666666666666666555 666666666666666654322 223
Q ss_pred cCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCccccc---C-CcccccCCCCCEEeCcCcccccccCccccccc
Q 046340 357 GDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGS---I-PSSLGKCQNLILLDLSNNNLSGTIPTEVIGLS 432 (715)
Q Consensus 357 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~---~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 432 (715)
..+++|++|++++|.+.+..+..|..+++|++|++++|++.+. . +..+..+++|++|++++|+++. ++..
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~----- 215 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGV----- 215 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHH-----
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHH-----
Confidence 3455555566555555555555555555555555555554321 1 1122344555555555555531 1110
Q ss_pred cccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcC---cccccccccCCcccccCcccCCCCCCCCE
Q 046340 433 SLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSC---IRLEELVMKGNFFQGNIPSSFSSLRGMQN 509 (715)
Q Consensus 433 ~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 509 (715)
....+..+++|++|+|++|++.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.
T Consensus 216 ----------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~ 276 (310)
T 4glp_A 216 ----------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRV 276 (310)
T ss_dssp ----------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSC
T ss_pred ----------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCE
Confidence 00013445566666666666665545444444 46666666666666 3344433 56777
Q ss_pred EeCCCCcccccCCccccCCCCCCEEeCCCCccc
Q 046340 510 LDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE 542 (715)
Q Consensus 510 L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~ 542 (715)
|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 77777777654 22 456667777777777765
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=202.59 Aligned_cols=231 Identities=19% Similarity=0.169 Sum_probs=157.4
Q ss_pred CCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhH--hhccccCcEEEccccceeecCC----
Q 046340 256 YKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAV--GNLSTRLRKLIVGNNQLFGNIP---- 329 (715)
Q Consensus 256 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~---- 329 (715)
..++.+.+.++.++.. .+.....+..+++|++|++++|.+.+..|..+ ..++ +|++|++++|.+++..+
T Consensus 64 ~~l~~l~l~~~~~~~~----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQ----LLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp CCCCEEEECSCCCBHH----HHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHH
T ss_pred cceeEEEEeCCcCCHH----HHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHH
Confidence 3577888887765421 01111123345779999999999998888777 5554 59999999999987544
Q ss_pred ccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCccccc---C-CccccCCCCCCeEeccCCcccccCCc---
Q 046340 330 SGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGE---I-PSSIGNLTSLAILAFDENMLEGSIPS--- 402 (715)
Q Consensus 330 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~---~-~~~~~~l~~L~~L~l~~n~i~~~~~~--- 402 (715)
..+..+++|++|+|++|.+.+..+..|..+++|++|++++|.+.+. . +..+..+++|++|++++|+++...+.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 218 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA 218 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence 3456799999999999999988889999999999999999997542 2 23357899999999999999743221
Q ss_pred ccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcc
Q 046340 403 SLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIR 482 (715)
Q Consensus 403 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 482 (715)
.+..+++|++|+|++|++.+..|..+..+. .+++|++|++++|+++ .+|..+. ++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~----------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~ 273 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCM----------------------WSSALNSLNLSFAGLE-QVPKGLP--AK 273 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCC----------------------CCTTCCCEECCSSCCC-SCCSCCC--SC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhcc----------------------CcCcCCEEECCCCCCC-chhhhhc--CC
Confidence 356789999999999998866565554431 1234444444444444 2233222 45
Q ss_pred cccccccCCcccccCcccCCCCCCCCEEeCCCCccc
Q 046340 483 LEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLS 518 (715)
Q Consensus 483 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 518 (715)
|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 274 L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 274 LRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 55555555555533 11 344555555666655554
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.4e-21 Score=190.14 Aligned_cols=179 Identities=23% Similarity=0.258 Sum_probs=119.0
Q ss_pred CCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcC
Q 046340 338 LELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSN 417 (715)
Q Consensus 338 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~ 417 (715)
.+.++++++.++.+ |..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++
T Consensus 16 ~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~----- 87 (251)
T 3m19_A 16 KKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT----- 87 (251)
T ss_dssp GTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE-----
T ss_pred CeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE-----
Confidence 44555555555522 22221 34555555555555444444555555555555555555444444444444444
Q ss_pred cccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccC
Q 046340 418 NNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNI 497 (715)
Q Consensus 418 n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 497 (715)
|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+++++.
T Consensus 88 --------------------L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 88 --------------------LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp --------------------EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred --------------------EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 555555555444556677778888888888888777777788888888888888888777
Q ss_pred cccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 046340 498 PSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE 544 (715)
Q Consensus 498 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 544 (715)
+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77888888888888888888888888888888888888888888775
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.9e-21 Score=196.77 Aligned_cols=196 Identities=23% Similarity=0.335 Sum_probs=142.6
Q ss_pred ccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCC
Q 046340 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLW 115 (715)
Q Consensus 36 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 115 (715)
+.++++|++|++++|.++.. + .+..+++|++|+|++|++++..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 45677888888888887754 2 57778888888888888875444 77888888888888887654 3577788888
Q ss_pred EEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCc
Q 046340 116 ILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQ 195 (715)
Q Consensus 116 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 195 (715)
+|++++|++++. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|+
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 888888887743 3 37778888888888888776544 7777888888888888776543 7777788888888887
Q ss_pred cceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceec
Q 046340 196 LQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGR 248 (715)
Q Consensus 196 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~ 248 (715)
++ .++. +..+++|+.|++++|++++.. .+..+++|+.|++++|.+++.
T Consensus 185 l~-~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 185 IS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cC-cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 76 3333 335777778888777777544 367777777777777777653
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2e-23 Score=219.36 Aligned_cols=231 Identities=19% Similarity=0.242 Sum_probs=142.8
Q ss_pred CcEEEccccceeecCC----ccccCCCCCCEEEcCCcee---eeecCcc-------ccCCCCccEEEccCCcccc----c
Q 046340 314 LRKLIVGNNQLFGNIP----SGLRNLVNLELLHLGGNQF---TGQIPGS-------IGDLHKLQWLMLPANEFWG----E 375 (715)
Q Consensus 314 L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i---~~~~~~~-------~~~l~~L~~L~L~~n~i~~----~ 375 (715)
|+.|++++|.+++..+ ..+..+++|+.|+|++|.+ ++..|.. +..+++|++|+|++|.++. .
T Consensus 34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 113 (386)
T 2ca6_A 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113 (386)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHH
T ss_pred ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHH
Confidence 5555555555443322 2244555666666665432 2222222 2455666666666666654 2
Q ss_pred CCccccCCCCCCeEeccCCcccccCCcccc----cC---------CCCCEEeCcCcccc-cccC---ccccccccccceE
Q 046340 376 IPSSIGNLTSLAILAFDENMLEGSIPSSLG----KC---------QNLILLDLSNNNLS-GTIP---TEVIGLSSLSIYL 438 (715)
Q Consensus 376 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~----~~---------~~L~~L~L~~n~l~-~~~~---~~~~~~~~l~~~L 438 (715)
++..+..+++|++|++++|.+....+..+. .+ ++|++|++++|++. ..++ ..+..++.+ +.|
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L 192 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL-HTV 192 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC-CEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc-CEE
Confidence 444555666666666666666533332222 22 66777777777665 2222 233344555 667
Q ss_pred EccCCcccc-----cCCcCCcCCCCCCceeccCCcCc----cccChhhhcCcccccccccCCccccc----CcccC--CC
Q 046340 439 DLSQNQLNG-----SLPPNFGILKNLGGIDISENKLS----GEIPNSLGSCIRLEELVMKGNFFQGN----IPSSF--SS 503 (715)
Q Consensus 439 ~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~--~~ 503 (715)
++++|.++. ..+..+..+++|+.|+|++|.++ ...|..+..+++|++|+|++|.+++. ++..+ ..
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 777776662 23336777888888888888885 45667778888888888888888765 34555 33
Q ss_pred CCCCCEEeCCCCcccc----cCCccc-cCCCCCCEEeCCCCcccccC
Q 046340 504 LRGMQNLDLSRNNLSG----RIPKYF-ENFFFLQNLNLSSNHFEGEV 545 (715)
Q Consensus 504 l~~L~~L~L~~N~l~~----~~~~~~-~~~~~L~~L~ls~N~l~~~~ 545 (715)
+++|+.|+|++|.++. ..|..+ .++++|++|++++|++.+..
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7889999999998887 355555 66788999999998887543
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=8.7e-23 Score=210.46 Aligned_cols=251 Identities=17% Similarity=0.210 Sum_probs=184.7
Q ss_pred CCCCEEEccCCcccccCChhHhhc-cccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeee-cCccccCCCCccE
Q 046340 287 SRLELLEISDNNFGGMLPEAVGNL-STRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQ-IPGSIGDLHKLQW 364 (715)
Q Consensus 287 ~~L~~L~ls~n~i~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~ 364 (715)
..++.++++++.+. +..+..+ ...++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34677777777665 2333333 13488888888888876555 55788899999999888755 6677888889999
Q ss_pred EEccCCcccccCCccccCCCCCCeEeccCC-ccccc-CCcccccCCCCCEEeCcCc-ccccc-cCccccccc-cccceEE
Q 046340 365 LMLPANEFWGEIPSSIGNLTSLAILAFDEN-MLEGS-IPSSLGKCQNLILLDLSNN-NLSGT-IPTEVIGLS-SLSIYLD 439 (715)
Q Consensus 365 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~~~-~l~~~L~ 439 (715)
|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ .+ +.|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEE
Confidence 999988887777778888889999999888 56652 5556778889999999988 87743 455566677 66 7888
Q ss_pred ccCC--ccc-ccCCcCCcCCCCCCceeccCCc-CccccChhhhcCcccccccccCCc-ccccCcccCCCCCCCCEEeCCC
Q 046340 440 LSQN--QLN-GSLPPNFGILKNLGGIDISENK-LSGEIPNSLGSCIRLEELVMKGNF-FQGNIPSSFSSLRGMQNLDLSR 514 (715)
Q Consensus 440 Ls~n--~i~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 514 (715)
+++| .++ ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 8888 444 3345566778889999999998 666777788888999999999885 3322223577888999999998
Q ss_pred CcccccCCccccCCC-CCCEEeCCCCcccccCC
Q 046340 515 NNLSGRIPKYFENFF-FLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 515 N~l~~~~~~~~~~~~-~L~~L~ls~N~l~~~~~ 546 (715)
| ++ .+.+..+. .+..|++++|.+++..|
T Consensus 282 ~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 282 I-VP---DGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp S-SC---TTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred c-cC---HHHHHHHHhhCcceEEecccCccccC
Confidence 8 32 33444442 37777788888887666
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=2.8e-21 Score=199.66 Aligned_cols=233 Identities=15% Similarity=0.077 Sum_probs=172.9
Q ss_pred CCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccC-CccccCCCCCCE-EEccCCcCcc
Q 046340 25 SLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQI-PDNISHCVNLES-LGLGVNELVG 102 (715)
Q Consensus 25 ~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~-L~L~~n~l~~ 102 (715)
+++++ .+|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+ +.+|.++++|++ +.+++|++..
T Consensus 18 ~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 18 ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 34555 345544 368899999999999887888999999999999999986544 557889988876 5666788988
Q ss_pred CccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEccc-CcceecCCccccCCC-CCCEEEeecccCcccCCccc
Q 046340 103 KVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAA-NQFVGQFPETLSELK-MMRYISFGENKLSGEIPFSI 180 (715)
Q Consensus 103 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~~l 180 (715)
+.|++|..+++|++|++++|+++...+..+....++..|++.+ +.+..+.+..|.++. .++.|++++|.|+.+.+..|
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f 174 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS
T ss_pred cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc
Confidence 8889999999999999999999876666777777888888865 567777777777764 58889999999886555444
Q ss_pred cCCCCCcEEEccC-CccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCc
Q 046340 181 YNLSSLTHFYFPF-NQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQ 259 (715)
Q Consensus 181 ~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~ 259 (715)
...+|+.+++.+ |.++ .+|..++..+++|+.|++++|+++.+.+.. +.+|+.|.+.++.--...|.+..+++|+
T Consensus 175 -~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~ 249 (350)
T 4ay9_X 175 -NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALM 249 (350)
T ss_dssp -TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred -cccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChh
Confidence 456788888875 5555 788877778888888888888888554433 4456666655544333444556666666
Q ss_pred EEEccc
Q 046340 260 WVSISH 265 (715)
Q Consensus 260 ~L~l~~ 265 (715)
.+++++
T Consensus 250 ~l~l~~ 255 (350)
T 4ay9_X 250 EASLTY 255 (350)
T ss_dssp EEECSC
T ss_pred hCcCCC
Confidence 666543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=6.9e-21 Score=192.69 Aligned_cols=191 Identities=23% Similarity=0.311 Sum_probs=168.4
Q ss_pred CCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEc
Q 046340 16 QRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 95 (715)
.+++.|+++++.+... + .+..+++|++|+|++|.+++..+ +..+++|++|+|++|++++. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 6899999999999863 3 69999999999999999987655 99999999999999999854 47999999999999
Q ss_pred cCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCccc
Q 046340 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGE 175 (715)
Q Consensus 96 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 175 (715)
++|++.+.. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 115 ~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 999998753 38999999999999999985443 8899999999999999987654 89999999999999999976
Q ss_pred CCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccc
Q 046340 176 IPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTG 223 (715)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~ 223 (715)
.+ +..+++|+.|++++|++++ ++. +..+++|+.|++++|.+++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCc-ccc--ccCCCCCCEEEccCCeeec
Confidence 54 8899999999999999984 442 3479999999999999985
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=2.3e-21 Score=200.35 Aligned_cols=241 Identities=16% Similarity=0.152 Sum_probs=152.6
Q ss_pred CEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeee-ecCccccCCCCccE-EEc
Q 046340 290 ELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTG-QIPGSIGDLHKLQW-LML 367 (715)
Q Consensus 290 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~-L~L 367 (715)
++++.++++++ .+|..+ +.++++|+|++|+|+.+.+.+|.++++|++|+|++|.+.+ +.++.|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45566666666 334332 3457888888888877666778888888888888887754 34456777777665 455
Q ss_pred cCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcC-cccccccCccccccccccceEEccCCccc
Q 046340 368 PANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSN-NNLSGTIPTEVIGLSSLSIYLDLSQNQLN 446 (715)
Q Consensus 368 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~ 446 (715)
+.|+++...+..|.++++|++|++++|.+....+..+....++..|++.+ +++....+..+.++...++.|+|++|+|+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 66777777777788888888888888887766666666666777777754 45554444445555444466777777777
Q ss_pred ccCCcCCcCCCCCCceeccC-CcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccc
Q 046340 447 GSLPPNFGILKNLGGIDISE-NKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYF 525 (715)
Q Consensus 447 ~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 525 (715)
.+.+..|. ..+|++|++++ |.++...++.|.++++|++|++++|+++.+.+..|. +|+.|.+.++.-....| .+
T Consensus 168 ~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CT
T ss_pred CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cc
Confidence 55544443 34667777764 455544455667777777777777777755554444 34444433332222333 25
Q ss_pred cCCCCCCEEeCCCC
Q 046340 526 ENFFFLQNLNLSSN 539 (715)
Q Consensus 526 ~~~~~L~~L~ls~N 539 (715)
.++++|+.++++++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 66666777776643
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=6.1e-23 Score=215.68 Aligned_cols=248 Identities=16% Similarity=0.172 Sum_probs=123.2
Q ss_pred cCccccCCCCCCEEeCCCCCCCccCCh----hhcCCCCCcEEecCCCc---CcccCCccc-------cCCCCCCEEEccC
Q 046340 32 LSPHIGNLSFLRVLDLKNNSFRDEIPQ----EIGYLFRLQILALHNNT---FGGQIPDNI-------SHCVNLESLGLGV 97 (715)
Q Consensus 32 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~---i~~~~~~~~-------~~l~~L~~L~L~~ 97 (715)
++..+..+++|++|+|++|.+++..+. .|..+++|++|+|++|. +.+..|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 445566667777777777776654332 25566777777777653 333334333 4566666666666
Q ss_pred CcCcc----CccccccCCCCCCEEEeeccccccccCccc----cCC---------CCCCEEEcccCccee-cCC---ccc
Q 046340 98 NELVG----KVPGKLGSLSKLWILSVHYNSLSGEIPSSF----GNL---------SSLEFLSAAANQFVG-QFP---ETL 156 (715)
Q Consensus 98 n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l---------~~L~~L~l~~n~~~~-~~~---~~l 156 (715)
|.+.+ ..+..+..+++|++|+|++|.++...+..+ ..+ ++|++|++++|.+.. ..+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66654 244455566666666666666543322222 222 555555555555541 112 233
Q ss_pred cCCCCCCEEEeecccCcc-----cCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccC
Q 046340 157 SELKMMRYISFGENKLSG-----EIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISN 231 (715)
Q Consensus 157 ~~l~~L~~L~L~~n~i~~-----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 231 (715)
..+++|++|++++|.++. ..+..+..+++|+.|++++|.+++.. ...++..+..
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---------------------~~~l~~~l~~ 242 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---------------------SSALAIALKS 242 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---------------------HHHHHHHGGG
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---------------------HHHHHHHHcc
Confidence 444555555555555441 11223444444444444444442000 0233344444
Q ss_pred CCCCCEEEeecccceec----c-ccc--cCcCCCcEEEcccCCCCCCCCCCcccccccc-ccCCCCCEEEccCCcccccC
Q 046340 232 ASNLMRLTIAKNGFSGR----V-PSL--ENLYKLQWVSISHNHLGNYGEKDNLEFVNSL-VNASRLELLEISDNNFGGML 303 (715)
Q Consensus 232 ~~~L~~L~L~~n~~~~~----~-~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l-~~~~~L~~L~ls~n~i~~~~ 303 (715)
+++|++|++++|.+.+. . ..+ ..+++|+.|++++|.++... ...+...+ ..+++|+.|++++|.+++..
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g---~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA---VRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH---HHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH---HHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55555555555554432 1 112 22555566666655554300 00122233 34567777777777776554
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=4e-21 Score=182.87 Aligned_cols=180 Identities=21% Similarity=0.221 Sum_probs=138.4
Q ss_pred CcccceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCcc
Q 046340 4 CQWKGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDN 83 (715)
Q Consensus 4 c~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (715)
|+|.++.|... ++.. +|..+ .++|++|+|++|.+++..+..|.++++|++|++++|+++...+..
T Consensus 7 C~~~~v~c~~~------------~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (208)
T 2o6s_A 7 CSGTTVECYSQ------------GRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV 71 (208)
T ss_dssp EETTEEECCSS------------CCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred ECCCEEEecCC------------CccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence 77888888652 2332 23322 357888888888888777777788888888888888888666667
Q ss_pred ccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCC
Q 046340 84 ISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMR 163 (715)
Q Consensus 84 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 163 (715)
|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.++++.+..|..+++|+
T Consensus 72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 78888888888888888877777788888888888888888866666678888888888888888877777788888888
Q ss_pred EEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchh
Q 046340 164 YISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLG 205 (715)
Q Consensus 164 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 205 (715)
+|++++|.+.+ .+++|+.|+++.|++++.+|..+.
T Consensus 152 ~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 152 YIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp EEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred EEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 88888886653 456788888888888888887665
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.8e-20 Score=176.08 Aligned_cols=181 Identities=20% Similarity=0.204 Sum_probs=143.3
Q ss_pred CEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeecc
Q 046340 43 RVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYN 122 (715)
Q Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 122 (715)
+.++.+++.++.+ |..+ .++|++|++++|+++...+..|..+++|++|++++|++.++.+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 5677888877754 3222 467888888888888776777888888888888888888777777888888888888888
Q ss_pred ccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCc
Q 046340 123 SLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPS 202 (715)
Q Consensus 123 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 202 (715)
++++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 8886666667888888888888888887777778888888888888888887777778888888888888887652
Q ss_pred chhcCCCCCCEEEeeCccccccCCccccCCCC
Q 046340 203 DLGFTLPNLEVLNVGGNQFTGPIPASISNASN 234 (715)
Q Consensus 203 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~ 234 (715)
.+++|+.|++..|.+++.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3567888888888888888877776654
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=4.3e-20 Score=200.27 Aligned_cols=195 Identities=23% Similarity=0.315 Sum_probs=134.2
Q ss_pred cccce-eeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCcc
Q 046340 5 QWKGV-TCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDN 83 (715)
Q Consensus 5 ~~~~~-~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (715)
.|.++ .|.. .+++.|++++|++++ +|..+ +++|++|+|++|.|+. +| ..+++|++|+|++|++++ +|.
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-
Confidence 67777 6754 578888888888887 55555 3788888888888884 44 457888888888888886 555
Q ss_pred ccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCC
Q 046340 84 ISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMR 163 (715)
Q Consensus 84 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 163 (715)
+.. +|++|++++|+++++ |. .+++|+.|++++|++++ +|. .+++|++|++++|.++++ |. |. ++|+
T Consensus 118 l~~--~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~ 183 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTML-PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL-PE-LP--ESLE 183 (571)
T ss_dssp CCT--TCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-CC--TTCC
T ss_pred hhc--CCCEEECCCCcCCCC-CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc-ch-hh--CCCC
Confidence 554 888888888888763 43 57788888888888875 444 467888888888887763 33 54 7788
Q ss_pred EEEeecccCcccCCccccCCCCC-------cEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCcccc
Q 046340 164 YISFGENKLSGEIPFSIYNLSSL-------THFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASIS 230 (715)
Q Consensus 164 ~L~L~~n~i~~~~~~~l~~l~~L-------~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 230 (715)
.|++++|.|+. +|. +.. +| +.|++++|+++ .+|..++. +++|+.|++++|.+++..|..+.
T Consensus 184 ~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 184 ALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp EEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCCHHHHHHHH
T ss_pred EEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCCCcCHHHHH
Confidence 88888887774 333 433 45 66666666665 55655552 66666666666666555554443
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=5.2e-20 Score=176.18 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=121.6
Q ss_pred CeEeccCCcccccCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccC
Q 046340 387 AILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISE 466 (715)
Q Consensus 387 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 466 (715)
+.++++++.++.+ |..+. ++++.|++++|++.+..+..+..++.+ +.|+|++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L-~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-CEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-CEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 3455555555532 32222 456666666666665444455556655 6677777777666777788888889999999
Q ss_pred CcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 467 NKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 467 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.++++.++.|..+++|++|++++|+|.+.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 99887777778889999999999999998888899999999999999999998888889999999999999999988776
Q ss_pred CCC
Q 046340 547 VKG 549 (715)
Q Consensus 547 ~~~ 549 (715)
..+
T Consensus 170 l~~ 172 (220)
T 2v9t_B 170 LKW 172 (220)
T ss_dssp GHH
T ss_pred cHH
Confidence 443
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=2.8e-19 Score=172.39 Aligned_cols=157 Identities=22% Similarity=0.235 Sum_probs=126.6
Q ss_pred CCCcccceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCC
Q 046340 2 HFCQWKGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIP 81 (715)
Q Consensus 2 ~~c~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (715)
..|+|.++.|.. +++. .+|..+. ++|++|+|++|.|++..+..|.++++|++|+|++|+++...+
T Consensus 17 ~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 17 CSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81 (229)
T ss_dssp CEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence 458888888864 2333 3344333 889999999999998888889999999999999999987767
Q ss_pred ccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCC
Q 046340 82 DNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKM 161 (715)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 161 (715)
..|..+++|++|+|++|+++++.+..|..+++|+.|+|++|+++ .+|..+..+++|++|++++|.+.++.+..|..+++
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence 77888999999999999988887778888889999999998888 66777888888888888888888777777778888
Q ss_pred CCEEEeecccCcc
Q 046340 162 MRYISFGENKLSG 174 (715)
Q Consensus 162 L~~L~L~~n~i~~ 174 (715)
|+.|++++|.+..
T Consensus 161 L~~L~l~~N~~~c 173 (229)
T 3e6j_A 161 LTHAYLFGNPWDC 173 (229)
T ss_dssp CCEEECTTSCBCT
T ss_pred CCEEEeeCCCccC
Confidence 8888888887764
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=8.3e-20 Score=174.80 Aligned_cols=158 Identities=21% Similarity=0.233 Sum_probs=125.6
Q ss_pred eEeccCCcccccCCcccccCCCCCEEeCcCcccccccC-ccccccccccceEEccCCcccccCCcCCcCCCCCCceeccC
Q 046340 388 ILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIP-TEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISE 466 (715)
Q Consensus 388 ~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 466 (715)
.+++++|.+++ +|..+ .+.+++|++++|++++..+ ..+..++.+ +.|+|++|.+++..+..|.++++|++|+|++
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 55566665553 23322 2345666677776665433 234556666 6777777777767777888899999999999
Q ss_pred CcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 467 NKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 467 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
|++++..+..|.++++|++|+|++|+++++.|..|..+++|+.|+|++|.+++..|+.|..+++|++|++++|+|.+.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99998888889999999999999999999889999999999999999999999999999999999999999999998887
Q ss_pred CCC
Q 046340 547 VKG 549 (715)
Q Consensus 547 ~~~ 549 (715)
..+
T Consensus 171 l~~ 173 (220)
T 2v70_A 171 LAW 173 (220)
T ss_dssp GHH
T ss_pred hHH
Confidence 543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=8.7e-19 Score=167.66 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=110.9
Q ss_pred EEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCC-hhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCC
Q 046340 20 GLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIP-QEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVN 98 (715)
Q Consensus 20 ~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 98 (715)
.++++++.++. +|..+. +.+++|+|++|.|++..+ ..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 67777777765 454443 345788888888877643 45777888888888888887777777778888888888888
Q ss_pred cCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcc
Q 046340 99 ELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSG 174 (715)
Q Consensus 99 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 174 (715)
++++..+..|..+++|++|+|++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8777777777777777777777777776667777777777777777777777666677777777777777776653
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=5.1e-19 Score=169.30 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=109.1
Q ss_pred EEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCc
Q 046340 20 GLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNE 99 (715)
Q Consensus 20 ~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 99 (715)
.++.++++++.. |..+. +.+++|+|++|.|+++.+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 455566666643 44333 577888888888877777777888888888888888877777777778888888888887
Q ss_pred CccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCc
Q 046340 100 LVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLS 173 (715)
Q Consensus 100 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~ 173 (715)
++.+.+..|..+++|+.|+|++|++++..+..|.++++|++|++++|.++++.+..|..+++|++|++++|++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77666666777777777777777777666667777777777777777777666666666666777777666654
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=5.5e-19 Score=177.01 Aligned_cols=171 Identities=26% Similarity=0.333 Sum_probs=89.7
Q ss_pred cCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCE
Q 046340 37 GNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWI 116 (715)
Q Consensus 37 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 116 (715)
..+++|++|++++|.+++. +.+..+++|++|++++|++++..+ +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 4556666666666666543 235556666666666666654333 55666666666666665532 23555666666
Q ss_pred EEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCcc
Q 046340 117 LSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQL 196 (715)
Q Consensus 117 L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i 196 (715)
|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 66666655532 3455555555555555555543 345555555555555555554333 44555555555555554
Q ss_pred ceecCcchhcCCCCCCEEEeeCcccc
Q 046340 197 QGSLPSDLGFTLPNLEVLNVGGNQFT 222 (715)
Q Consensus 197 ~~~~~~~~~~~l~~L~~L~L~~n~l~ 222 (715)
+ .++. ...+++|+.|++++|.++
T Consensus 191 ~-~l~~--l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 S-DLRA--LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp C-BCGG--GTTCTTCSEEEEEEEEEE
T ss_pred C-CChh--hccCCCCCEEECcCCccc
Confidence 4 2221 123444444444444443
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=4.6e-19 Score=183.79 Aligned_cols=180 Identities=22% Similarity=0.170 Sum_probs=117.3
Q ss_pred CEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCcccc-CCCCCCeEeccCCcccccCCcccccCCCCCEEeCcC
Q 046340 339 ELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIG-NLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSN 417 (715)
Q Consensus 339 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~ 417 (715)
+.++++++.++. +|..+ .+.++.|+|++|.+++..+..|. ++++|+.|++++|++.+..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666653 23222 13456666666666555555554 555566666655555555555555555555555555
Q ss_pred cccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccC
Q 046340 418 NNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNI 497 (715)
Q Consensus 418 n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 497 (715)
|++. ...+..|..+++|++|+|++|++....+..|.++++|++|+|++|.++++.
T Consensus 98 N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLH-------------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCC-------------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 5554 344455666677777777777777666777777777777777777777666
Q ss_pred cccC---CCCCCCCEEeCCCCcccccCCccccCCCC--CCEEeCCCCcccccCC
Q 046340 498 PSSF---SSLRGMQNLDLSRNNLSGRIPKYFENFFF--LQNLNLSSNHFEGEVP 546 (715)
Q Consensus 498 ~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~--L~~L~ls~N~l~~~~~ 546 (715)
+..| ..+++|+.|+|++|+++.+.+..|..++. ++.|++++|+|.+.+.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 6666 56788888888888888777777777776 4788999999887665
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=7.5e-19 Score=182.16 Aligned_cols=175 Identities=21% Similarity=0.180 Sum_probs=119.2
Q ss_pred EEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhc-CCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCC
Q 046340 20 GLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIG-YLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVN 98 (715)
Q Consensus 20 ~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 98 (715)
.++++++++.. +|..+. +.+++|+|++|.|++..+..|. ++++|++|+|++|+++...+..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 56666776664 344332 3467777777777776666666 7777777777777777666677777777777777777
Q ss_pred cCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccc---cCCCCCCEEEeecccCccc
Q 046340 99 ELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETL---SELKMMRYISFGENKLSGE 175 (715)
Q Consensus 99 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~L~~n~i~~~ 175 (715)
++..+.+..|..+++|+.|+|++|++++..+..|.++++|++|+|++|.++++.+..| ..+++|++|+|++|.++..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 7776666677777777777777777776666777777777777777777776555555 4566777777777777655
Q ss_pred CCccccCCCC--CcEEEccCCccc
Q 046340 176 IPFSIYNLSS--LTHFYFPFNQLQ 197 (715)
Q Consensus 176 ~~~~l~~l~~--L~~L~l~~n~i~ 197 (715)
.+..+..++. ++.|++++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 5555555554 355666666554
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2e-18 Score=172.90 Aligned_cols=168 Identities=21% Similarity=0.225 Sum_probs=150.8
Q ss_pred CCeEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEc
Q 046340 16 QRVTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGL 95 (715)
Q Consensus 16 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 95 (715)
..++.|++++|.+... +.+..+++|++|+|++|.+++..+ +.++++|++|++++|++++ +..+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCEEEC
Confidence 6789999999999865 458999999999999999997655 9999999999999999985 345999999999999
Q ss_pred cCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCccc
Q 046340 96 GVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGE 175 (715)
Q Consensus 96 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 175 (715)
++|++.+. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 99999865 5688999999999999999954 679999999999999999998765 89999999999999999975
Q ss_pred CCccccCCCCCcEEEccCCccc
Q 046340 176 IPFSIYNLSSLTHFYFPFNQLQ 197 (715)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~i~ 197 (715)
+ .+..+++|+.|++++|.+.
T Consensus 194 -~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 -R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -G-GGTTCTTCSEEEEEEEEEE
T ss_pred -h-hhccCCCCCEEECcCCccc
Confidence 3 4899999999999999987
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=9.5e-19 Score=179.07 Aligned_cols=103 Identities=13% Similarity=-0.025 Sum_probs=86.8
Q ss_pred cccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCcc-EEEccCCcccccCCccccCCCCCCeE
Q 046340 311 STRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQ-WLMLPANEFWGEIPSSIGNLTSLAIL 389 (715)
Q Consensus 311 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L 389 (715)
.++|+.+++++|.++.+.+.+|.++++|+.|+|.+| ++.+.+.+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 345888888888888888888888889999999887 7777888888888898 888887 6777778888889999999
Q ss_pred eccCCcccccCCcccccCCCCCEEeC
Q 046340 390 AFDENMLEGSIPSSLGKCQNLILLDL 415 (715)
Q Consensus 390 ~l~~n~i~~~~~~~~~~~~~L~~L~L 415 (715)
++++|.++.+.+.+|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 98888888888888888888888764
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=2.8e-18 Score=186.10 Aligned_cols=186 Identities=26% Similarity=0.333 Sum_probs=105.3
Q ss_pred CcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccC
Q 046340 314 LRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDE 393 (715)
Q Consensus 314 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 393 (715)
++.|++++|.+++ +|..+ .++|+.|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|+.|++++
T Consensus 61 L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp CSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred ccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 5555555555554 33322 245666666666665 233 334566666666666654 333 333 666666666
Q ss_pred CcccccCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCcccc
Q 046340 394 NMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEI 473 (715)
Q Consensus 394 n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 473 (715)
|.+++ +|. .+++|+.|++++|++++ +|. .++.+ +.|+|++|.+++ +|. |. ++|+.|+|++|.|+ .+
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 66664 332 45666666666666663 343 23344 566666666665 333 44 66777777777766 33
Q ss_pred ChhhhcCccc-------ccccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCC
Q 046340 474 PNSLGSCIRL-------EELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENF 528 (715)
Q Consensus 474 ~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 528 (715)
|. +.. +| +.|+|++|+++. +|..+..+++|+.|+|++|++++..|..|..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 33 333 55 777777777773 45555557777777777777777666665543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.3e-18 Score=187.73 Aligned_cols=172 Identities=26% Similarity=0.318 Sum_probs=95.6
Q ss_pred ccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCC
Q 046340 36 IGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLW 115 (715)
Q Consensus 36 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 115 (715)
+..+++|+.|++++|.+.... .|..+++|+.|+|++|++.+..+ +..+++|+.|+|++|.+.+. ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 345566666666666665432 35666666666666666654333 56666666666666666532 2455666666
Q ss_pred EEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCc
Q 046340 116 ILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQ 195 (715)
Q Consensus 116 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 195 (715)
.|+|++|++++. ..+..+++|+.|+|++|.+.++ ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|+
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 666666665532 3355566666666666665544 345555566666666665554443 5555555555555555
Q ss_pred cceecCcchhcCCCCCCEEEeeCcccc
Q 046340 196 LQGSLPSDLGFTLPNLEVLNVGGNQFT 222 (715)
Q Consensus 196 i~~~~~~~~~~~l~~L~~L~L~~n~l~ 222 (715)
+++ ++ . +..+++|+.|+|++|.+.
T Consensus 187 i~~-l~-~-l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 187 ISD-LR-A-LAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCB-CG-G-GTTCTTCSEEECCSEEEE
T ss_pred CCC-Ch-H-HccCCCCCEEEccCCcCc
Confidence 542 22 1 224555555555555544
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.1e-17 Score=161.28 Aligned_cols=153 Identities=27% Similarity=0.313 Sum_probs=124.3
Q ss_pred CCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeec
Q 046340 42 LRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHY 121 (715)
Q Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 121 (715)
-+.++.+++.++.+ |..+ .++|++|+|++|++++..+..|..+++|++|+|++|++..+.+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 56789998888754 4333 38899999999999888888888899999999999998877777788889999999999
Q ss_pred cccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccce
Q 046340 122 NSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQG 198 (715)
Q Consensus 122 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 198 (715)
|++++..+..|..+++|++|++++|.+. ..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9888766677888888888888888887 456667888888888888888887766777778888888888887753
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.4e-18 Score=160.75 Aligned_cols=152 Identities=15% Similarity=0.194 Sum_probs=71.0
Q ss_pred CCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEE
Q 046340 62 YLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFL 141 (715)
Q Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 141 (715)
.+++|++|++++|.++ ..+ .+..+++|++|++++|.+.. +..+..+++|++|++++|++++..+..|..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3444444444444444 222 34444445555555443321 1244445555555555555544444445555555555
Q ss_pred EcccCcceecCCccccCCCCCCEEEeeccc-CcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCcc
Q 046340 142 SAAANQFVGQFPETLSELKMMRYISFGENK-LSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQ 220 (715)
Q Consensus 142 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 220 (715)
++++|.+++..+..+..+++|++|++++|. ++.. + .+..+++|+.|++++|+++ .++ . ...+++|+.|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~-~~~-~-l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVH-DYR-G-IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCC-CCT-T-GGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCc-ChH-H-hccCCCCCEEEeeCcc
Confidence 555555544444445555555555555554 3322 2 3455555555555555554 222 1 2245555666665555
Q ss_pred cc
Q 046340 221 FT 222 (715)
Q Consensus 221 l~ 222 (715)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 43
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.4e-18 Score=176.00 Aligned_cols=262 Identities=12% Similarity=0.069 Sum_probs=175.6
Q ss_pred cCCCcEEEcccCCCCCCCCCCcccccccccc-CCCCCEEEccCCccc--ccCChhHhhccccCcEEEccccceeecCCcc
Q 046340 255 LYKLQWVSISHNHLGNYGEKDNLEFVNSLVN-ASRLELLEISDNNFG--GMLPEAVGNLSTRLRKLIVGNNQLFGNIPSG 331 (715)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~-~~~L~~L~ls~n~i~--~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 331 (715)
+.+++.|.++++- .. .....+.. +++|+.|||++|++. ......+ +. ++.+.+..|. +.+.+
T Consensus 24 ~~~l~~L~l~g~i-~~-------~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~-~~~~~~~~~~---I~~~a 88 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NA-------EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PN-GKFYIYMANF---VPAYA 88 (329)
T ss_dssp HHHCSEEEEEEEE-CH-------HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GG-GCCEEECTTE---ECTTT
T ss_pred hCceeEEEEeccc-cH-------HHHHHHHHhhccCeEEecCcceeEEecCccccc---cc-cccccccccc---cCHHH
Confidence 5678888887641 11 11223333 788999999999887 2222111 11 4455555553 34566
Q ss_pred ccC--------CCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCc----cccc
Q 046340 332 LRN--------LVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENM----LEGS 399 (715)
Q Consensus 332 ~~~--------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~----i~~~ 399 (715)
|.+ +++|+.|+|.+ .++.+.+.+|.+|++|+++++++|.+..+.+.+|.++.++..+....+. ....
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i 167 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW 167 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT
T ss_pred hcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc
Confidence 777 99999999998 8887888899999999999999999888888899988888877776632 2233
Q ss_pred CCcccccCCCCC-EEeCcCcccc------------------------cccCcccc-ccccccceEEccCCcccccCCcCC
Q 046340 400 IPSSLGKCQNLI-LLDLSNNNLS------------------------GTIPTEVI-GLSSLSIYLDLSQNQLNGSLPPNF 453 (715)
Q Consensus 400 ~~~~~~~~~~L~-~L~L~~n~l~------------------------~~~~~~~~-~~~~l~~~L~Ls~n~i~~~~~~~~ 453 (715)
...+|..+..|+ .+.+....-. ......+. .++.+ +.+++++|+++.+...+|
T Consensus 168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L-~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL-VSLDISKTNATTIPDFTF 246 (329)
T ss_dssp TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTC-CEEECTTBCCCEECTTTT
T ss_pred cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCC-eEEECCCCCcceecHhhh
Confidence 445566666666 3333321100 00000000 13445 677777777777777777
Q ss_pred cCCCCCCceeccCCcCccccChhhhcCcccc-cccccCCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCC
Q 046340 454 GILKNLGGIDISENKLSGEIPNSLGSCIRLE-ELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQ 532 (715)
Q Consensus 454 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~ 532 (715)
.++++|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+.+.+|.++++|+
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 77777777777776 6666677777777777 777777 66667777777777777777777777777777777777777
Q ss_pred EEe
Q 046340 533 NLN 535 (715)
Q Consensus 533 ~L~ 535 (715)
+++
T Consensus 325 ~ly 327 (329)
T 3sb4_A 325 LIY 327 (329)
T ss_dssp EEE
T ss_pred hhc
Confidence 765
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=5.9e-18 Score=185.78 Aligned_cols=193 Identities=22% Similarity=0.238 Sum_probs=161.4
Q ss_pred CCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEE
Q 046340 39 LSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILS 118 (715)
Q Consensus 39 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 118 (715)
+..+..+.++.+.+.+..+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3445667788888876544 67899999999999999843 3 58999999999999999987665 89999999999
Q ss_pred eeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccce
Q 046340 119 VHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQG 198 (715)
Q Consensus 119 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 198 (715)
|++|.+++ + ..+..+++|++|+|++|.+.++ ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+
T Consensus 94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99999984 3 3789999999999999999864 4588999999999999999876 578899999999999999985
Q ss_pred ecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceec
Q 046340 199 SLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGR 248 (715)
Q Consensus 199 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~ 248 (715)
..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+...
T Consensus 168 ~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 544 44789999999999998864 4588888999999998888754
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=9.2e-18 Score=157.79 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=130.6
Q ss_pred cccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCC
Q 046340 35 HIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKL 114 (715)
Q Consensus 35 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 114 (715)
....+++|++|++++|.+++. + .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 346788999999999999844 4 5888999999999999775 44578889999999999999988788889999999
Q ss_pred CEEEeeccccccccCccccCCCCCCEEEcccCc-ceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccC
Q 046340 115 WILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQ-FVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPF 193 (715)
Q Consensus 115 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 193 (715)
++|++++|++++..+..+..+++|++|++++|. +... + .+..+++|++|++++|.+++.. .+..+++|+.|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeC
Confidence 999999999987778889999999999999998 6544 3 6888999999999999998643 688899999999999
Q ss_pred Cccc
Q 046340 194 NQLQ 197 (715)
Q Consensus 194 n~i~ 197 (715)
|++.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 9875
No 117
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=3e-16 Score=164.69 Aligned_cols=330 Identities=12% Similarity=0.041 Sum_probs=196.1
Q ss_pred CccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCC
Q 046340 33 SPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLS 112 (715)
Q Consensus 33 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 112 (715)
..+|.+|++|+.++|..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +..+...+|..+.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 456777777777777643 66566666777777777777644 55455666777777776666543 4445555666554
Q ss_pred CCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEcc
Q 046340 113 KLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFP 192 (715)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 192 (715)
.++..... ........+|.++++|+.+.+.++. ..+...+|.++.+|+.+++..+ ++.+....|.++..|+.+.+.
T Consensus 141 ~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 33322222 2222334566667777777665432 3455556666666766666554 444455566666666666655
Q ss_pred CCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCC
Q 046340 193 FNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYG 272 (715)
Q Consensus 193 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 272 (715)
.+.. .+....+ ....|+.+.+... ++.+....+.++..++.+.+..+...-...
T Consensus 217 ~~~~--~i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~---------------------- 270 (394)
T 4fs7_A 217 NSLY--YLGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGS---------------------- 270 (394)
T ss_dssp TTCC--EECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSC----------------------
T ss_pred CCce--Eeehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeecc----------------------
Confidence 5432 2222222 3455666555433 222334445555555555554443221111
Q ss_pred CCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeec
Q 046340 273 EKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQI 352 (715)
Q Consensus 273 ~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 352 (715)
.+..+..++.+......+. ...+... .+|+.+.+.++ +..+...+|.++++|+.++|..+ ++.+.
T Consensus 271 ---------~F~~~~~l~~~~~~~~~i~---~~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~ 335 (394)
T 4fs7_A 271 ---------LFYNCSGLKKVIYGSVIVP---EKTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG 335 (394)
T ss_dssp ---------TTTTCTTCCEEEECSSEEC---TTTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ---------ccccccccceeccCceeec---ccccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh
Confidence 2334445555544443221 1122233 34777777554 55566778889999999999754 66677
Q ss_pred CccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEE
Q 046340 353 PGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILL 413 (715)
Q Consensus 353 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 413 (715)
..+|.+|.+|+.+.+..+ +..+...+|.+|++|+.+++..+ +. ....+|.++++|+.+
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 888999999999999776 66777788999999999998765 33 234578888888765
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=5.3e-18 Score=158.46 Aligned_cols=156 Identities=27% Similarity=0.359 Sum_probs=115.0
Q ss_pred CEEeCcCcccccccCccccccccccceEEccCCcccccCCc-CCcCCCCCCceeccCCcCccccChhhhcCccccccccc
Q 046340 411 ILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPP-NFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMK 489 (715)
Q Consensus 411 ~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 489 (715)
+.+++++|++. .+|..+.. .+ +.|++++|.+++..+. .|..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56666666665 44543322 33 6677777777765553 47788888888888888888888888888889999999
Q ss_pred CCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCccccCCCCCCCCcc
Q 046340 490 GNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVKGVFSNSSAISLDGNDNLCGGI 569 (715)
Q Consensus 490 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 569 (715)
+|++++..+..|.++++|+.|+|++|++++..|+.|..+++|++|++++|++.+.++..+...-+....+.++...|..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 99988888888888899999999999998888888888999999999999998877654332222222344555566654
Q ss_pred c
Q 046340 570 S 570 (715)
Q Consensus 570 ~ 570 (715)
+
T Consensus 167 ~ 167 (192)
T 1w8a_A 167 S 167 (192)
T ss_dssp T
T ss_pred h
Confidence 3
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.8e-17 Score=163.26 Aligned_cols=170 Identities=22% Similarity=0.233 Sum_probs=97.3
Q ss_pred CCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEE
Q 046340 39 LSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILS 118 (715)
Q Consensus 39 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 118 (715)
+..++.++++++.+++.. .+..+++|++|++++|+++. .+ .+..+++|++|++++|++.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344455555666555432 35556666666666666553 22 45556666666666666654433 56666666666
Q ss_pred eeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccce
Q 046340 119 VHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQG 198 (715)
Q Consensus 119 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 198 (715)
+++|++++ ++. +.. ++|++|++++|.+++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|++++
T Consensus 92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 66666653 222 222 5666666666666543 2356666666666666666654 2 45666666666666666653
Q ss_pred ecCcchhcCCCCCCEEEeeCcccccc
Q 046340 199 SLPSDLGFTLPNLEVLNVGGNQFTGP 224 (715)
Q Consensus 199 ~~~~~~~~~l~~L~~L~L~~n~l~~~ 224 (715)
. ..+..+++|+.|++++|.++..
T Consensus 165 ~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C---TTSTTCCCCCEEEEEEEEEECC
T ss_pred h---HHhccCCCCCEEeCCCCcccCC
Confidence 3 2223567777777777776643
No 120
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.71 E-value=5e-16 Score=163.01 Aligned_cols=332 Identities=12% Similarity=0.043 Sum_probs=193.1
Q ss_pred CCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCcc
Q 046340 52 FRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSS 131 (715)
Q Consensus 52 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 131 (715)
++.+-..+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ +..+...+|.++.+|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44444555666666666666532 55455556666666666666533 44445555666666665555432 33233444
Q ss_pred ccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCC
Q 046340 132 FGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNL 211 (715)
Q Consensus 132 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L 211 (715)
|.++..++..... .+..+...+|.++++|+.+.+.++. ..+....|.++.+|+.+.+.
T Consensus 136 F~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~------------------- 193 (394)
T 4fs7_A 136 FKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLP------------------- 193 (394)
T ss_dssp TTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCC-------------------
T ss_pred eecccccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcC-------------------
Confidence 5444332222211 1222333445555555555554332 22333444444455544444
Q ss_pred CEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCE
Q 046340 212 EVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLEL 291 (715)
Q Consensus 212 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~ 291 (715)
.+ ++.+....|.++..|+.+.+..+... ..........|+.+.+... +..+. ...+..+..++.
T Consensus 194 ------~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~-------~~~f~~~~~l~~ 257 (394)
T 4fs7_A 194 ------RN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELG-------KSVFYGCTDLES 257 (394)
T ss_dssp ------TT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEEC-------SSTTTTCSSCCE
T ss_pred ------CC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecc-------ccccccccccee
Confidence 33 22233344455555555544433222 1111222345555555322 11111 124556777777
Q ss_pred EEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCc
Q 046340 292 LEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANE 371 (715)
Q Consensus 292 L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 371 (715)
+.+..+... .....+... ..++.+......+ ...+|..+.+|+.+.+..+ ++.+...+|.++.+|+.+++..+
T Consensus 258 ~~~~~~~~~-i~~~~F~~~-~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 258 ISIQNNKLR-IGGSLFYNC-SGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp EEECCTTCE-ECSCTTTTC-TTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred EEcCCCcce-eeccccccc-cccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-
Confidence 777665332 334444444 3488887776654 3467899999999999876 66678889999999999999754
Q ss_pred ccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccccccCccccccccc
Q 046340 372 FWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSL 434 (715)
Q Consensus 372 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l 434 (715)
++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ +. .+...+.++..+
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence 77778889999999999999877 77788899999999999999765 33 334566666655
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.4e-17 Score=164.07 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=102.3
Q ss_pred eEEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccC
Q 046340 18 VTGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGV 97 (715)
Q Consensus 18 v~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 97 (715)
++.++++.+.+.+.. .+..+++|++|++++|.+++.. .+..+++|++|+|++|++++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344455566665433 4566667777777777666432 46666777777777776664433 66666777777777
Q ss_pred CcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCC
Q 046340 98 NELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIP 177 (715)
Q Consensus 98 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 177 (715)
|++.+..+ +.. ++|+.|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.
T Consensus 95 N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--
Confidence 76664322 222 6677777777766642 2466666777777777766654 2466666677777777766654
Q ss_pred ccccCCCCCcEEEccCCccc
Q 046340 178 FSIYNLSSLTHFYFPFNQLQ 197 (715)
Q Consensus 178 ~~l~~l~~L~~L~l~~n~i~ 197 (715)
..+..+++|+.|++++|.+.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCccc
Confidence 45666666777777766665
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=1e-15 Score=159.64 Aligned_cols=265 Identities=13% Similarity=0.095 Sum_probs=126.9
Q ss_pred CCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEE
Q 046340 39 LSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILS 118 (715)
Q Consensus 39 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 118 (715)
+..++.+.+.+ .++.+...+|.+. +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+..+...+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 34555555543 2444445555553 4555555544 444445555553 455555553 44445555555555555555
Q ss_pred eeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccce
Q 046340 119 VHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQG 198 (715)
Q Consensus 119 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 198 (715)
++.|+++.....+|. ..+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.+....|.+ .+|+.+.+. +.++
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~- 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT- 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-
Confidence 555555544444444 355555555432 44444555555555555555543 33344444444 445555552 2233
Q ss_pred ecCcchhcCCCCCCEEEeeCcccc-----ccCCccccCCCCCCEEEeecccceeccccccCcCCCcEEEcccCCCCCCCC
Q 046340 199 SLPSDLGFTLPNLEVLNVGGNQFT-----GPIPASISNASNLMRLTIAKNGFSGRVPSLENLYKLQWVSISHNHLGNYGE 273 (715)
Q Consensus 199 ~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 273 (715)
.++...|..+++|+.+++.++.+. .+....|.+|++|+.+++.+ .+..+...
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~---------------------- 317 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG---------------------- 317 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT----------------------
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh----------------------
Confidence 344444444555555555444332 23334444444444444442 12222221
Q ss_pred CCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCCC-CCCEEEcCCcee
Q 046340 274 KDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNLV-NLELLHLGGNQF 348 (715)
Q Consensus 274 ~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i 348 (715)
+|.+|++|+.+.+..+ ++......|... +|+.+++.+|.+.......|.+++ +++.|++..+.+
T Consensus 318 --------aF~~c~~L~~l~lp~~-l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 318 --------LLGGNRKVTQLTIPAN-VTQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp --------TTTTCCSCCEEEECTT-CCEECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred --------hhcCCCCccEEEECcc-ccEEcHHhCCCC--CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 3444444555544332 333333344443 355555555555544455555553 566666665544
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=7.1e-16 Score=160.79 Aligned_cols=195 Identities=11% Similarity=0.069 Sum_probs=92.0
Q ss_pred CCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcC
Q 046340 338 LELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSN 417 (715)
Q Consensus 338 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~ 417 (715)
|+.+.+.. .++.+...+|.+|++|+.+++.+|.++.+...+|. +.+|+.+.+.++ +..+...+|.+|++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 44444443 33333334444444444444444444433333333 244444444422 3334444444444444444443
Q ss_pred cccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCc-----cccChhhhcCcccccccccCCc
Q 046340 418 NNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLS-----GEIPNSLGSCIRLEELVMKGNF 492 (715)
Q Consensus 418 n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~ 492 (715)
+ +.......|.+ ..+ +.+.+ .+.++.+...+|.++++|+.+++.+|.+. .+.+.+|.+|++|+.+.+. +.
T Consensus 236 ~-l~~I~~~aF~~-~~L-~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~ 310 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGI-TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES 310 (401)
T ss_dssp T-CCEECTTTTTT-CCC-SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred C-ccCcccccccc-CCc-cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence 2 22222222222 223 34444 23344444455555555555555555443 3444556666666666665 33
Q ss_pred ccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccc
Q 046340 493 FQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE 542 (715)
Q Consensus 493 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~ 542 (715)
++.+...+|.++.+|+.+.|..| ++.+.+.+|.++ +|+++++++|.+.
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 55555566666666666666433 555555566665 6666666665543
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.6e-19 Score=196.99 Aligned_cols=190 Identities=16% Similarity=0.118 Sum_probs=103.4
Q ss_pred cCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCE
Q 046340 37 GNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWI 116 (715)
Q Consensus 37 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 116 (715)
..+++|+.|+|++|.++ .+|+.++.+++|+.|++++|......+..+ ..+...+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 45566666666666664 345566666666666665543100000000 000123344444555555555
Q ss_pred EE-eecc-------------ccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCCccccC
Q 046340 117 LS-VHYN-------------SLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIPFSIYN 182 (715)
Q Consensus 117 L~-Ls~n-------------~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~ 182 (715)
|+ ++.| .++...+ ..|+.|++++|.++++ |. |..+++|+.|++++|.++ .+|..++.
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred CcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhc
Confidence 55 3333 3332111 2366666666666653 33 666666666666666666 44556666
Q ss_pred CCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccC-CccccCCCCCCEEEeecccceeccc
Q 046340 183 LSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPI-PASISNASNLMRLTIAKNGFSGRVP 250 (715)
Q Consensus 183 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~L~~n~~~~~~~ 250 (715)
+++|+.|++++|+++ .+| .+. .+++|+.|++++|.+++.. |..+..+++|+.|++++|.+.+..+
T Consensus 485 l~~L~~L~Ls~N~l~-~lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASDNALE-NVD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CTTCCEEECCSSCCC-CCG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCEEECCCCCCC-CCc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 666666666666666 355 332 5666666666666666554 6666666666666666666655443
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=8.6e-19 Score=191.31 Aligned_cols=191 Identities=20% Similarity=0.147 Sum_probs=124.4
Q ss_pred cCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCc-------------ccccCCccccCCCCCCeEe-ccCCcccc
Q 046340 333 RNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANE-------------FWGEIPSSIGNLTSLAILA-FDENMLEG 398 (715)
Q Consensus 333 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-l~~n~i~~ 398 (715)
..+++|+.|+|++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45667777777777776 556677777777777776553 2334444555555566555 4444322
Q ss_pred cCCcccccCCCCCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhh
Q 046340 399 SIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLG 478 (715)
Q Consensus 399 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 478 (715)
.|+.+.+++|.+....+ ..+ +.|+|++|.+++ +|. |..+++|+.|+|++|.++ .+|..+.
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhcccccccCc------cCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 23333344444442111 123 567777777775 344 777777777777777777 5567777
Q ss_pred cCcccccccccCCcccccCcccCCCCCCCCEEeCCCCcccccC-CccccCCCCCCEEeCCCCcccccCCC
Q 046340 479 SCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRI-PKYFENFFFLQNLNLSSNHFEGEVPV 547 (715)
Q Consensus 479 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~L~~L~ls~N~l~~~~~~ 547 (715)
++++|+.|+|++|.+++ +| .|..+++|+.|+|++|.+++.. |..|..+++|+.|+|++|++++.+|.
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 77777778888777775 44 6777777888888888777776 77777777788888888877776654
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=6.9e-17 Score=150.76 Aligned_cols=133 Identities=23% Similarity=0.332 Sum_probs=107.0
Q ss_pred CEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccC
Q 046340 411 ILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKG 490 (715)
Q Consensus 411 ~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 490 (715)
+.+++++|.++ .+|..+. ..+ +.|++++|.++ .+|..|..+++|+.|+|++|++++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDV-TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTC-CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCC-CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45566666665 3444332 233 66777777776 4556788888899999999999888888899999999999999
Q ss_pred CcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCCC
Q 046340 491 NFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPVK 548 (715)
Q Consensus 491 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~ 548 (715)
|+++++.+..|.++++|+.|+|++|.++.+.++.|..+++|+.|++++|++.+.+...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 9999888889999999999999999999888888999999999999999999877643
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=9.4e-18 Score=189.13 Aligned_cols=200 Identities=19% Similarity=0.159 Sum_probs=104.0
Q ss_pred cccceeeCCCCCCeEEEEcCCCCCCcccCccccCCCCCC-----EEeCCCCCCCccCChhhcCCCCCcEEecCCCcCccc
Q 046340 5 QWKGVTCSPRHQRVTGLRLPSLLLQGSLSPHIGNLSFLR-----VLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQ 79 (715)
Q Consensus 5 ~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~-----~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 79 (715)
.|.+..+.. .++++++|..+++... +..+.....|+ .++++.|.+. ..++.|..++.|+.|+|++|.+. .
T Consensus 164 ~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~ 238 (727)
T 4b8c_D 164 TATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-N 238 (727)
T ss_dssp --------------------------------------------------------------CCCCCCEEECTTSCCS-C
T ss_pred cCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-C
Confidence 455554443 6789999988888764 33222222222 2233333333 45677888888888888888887 5
Q ss_pred CCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCC
Q 046340 80 IPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSEL 159 (715)
Q Consensus 80 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 159 (715)
+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|+|+ .+|..|.++++|++|+|++|.+.. +|..|..+
T Consensus 239 l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l 315 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNL 315 (727)
T ss_dssp CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSC
T ss_pred CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChhhhcC
Confidence 6666668888888888888887 66777888888888888888888 667788888888888888888864 45568888
Q ss_pred CCCCEEEeecccCcccCCccccCCCC-CcEEEccCCccceecCcchhcCCCCCCEEEeeCc
Q 046340 160 KMMRYISFGENKLSGEIPFSIYNLSS-LTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGN 219 (715)
Q Consensus 160 ~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n 219 (715)
++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|. .|+.|+++.|
T Consensus 316 ~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD 369 (727)
T ss_dssp TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence 88888888888888777766655422 22356777777655543 3455555555
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=3.5e-16 Score=146.05 Aligned_cols=130 Identities=25% Similarity=0.273 Sum_probs=92.6
Q ss_pred EEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCCh-hhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccC
Q 046340 19 TGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQ-EIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGV 97 (715)
Q Consensus 19 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 97 (715)
+.+++++++++ .+|..+.. ++++|+|++|.|++..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666677774 34544433 778888888887766554 477777777888777777777777777777777777777
Q ss_pred CcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceec
Q 046340 98 NELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQ 151 (715)
Q Consensus 98 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 151 (715)
|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777777777777777777777777777766677777777777777777776543
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=1.9e-16 Score=144.72 Aligned_cols=132 Identities=19% Similarity=0.157 Sum_probs=71.0
Q ss_pred CCCCEEeCCCCCCC-ccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEE
Q 046340 40 SFLRVLDLKNNSFR-DEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILS 118 (715)
Q Consensus 40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 118 (715)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+..|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666655 33444455556666666666655543 4455555555555555555554555555555555555
Q ss_pred eecccccccc-CccccCCCCCCEEEcccCcceecCC---ccccCCCCCCEEEeecccCc
Q 046340 119 VHYNSLSGEI-PSSFGNLSSLEFLSAAANQFVGQFP---ETLSELKMMRYISFGENKLS 173 (715)
Q Consensus 119 Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~L~~n~i~ 173 (715)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555321 1445555555555555555554433 24455555555555555444
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=1.3e-16 Score=145.74 Aligned_cols=136 Identities=21% Similarity=0.153 Sum_probs=122.5
Q ss_pred CCCeEEEEcCCCCCC-cccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEE
Q 046340 15 HQRVTGLRLPSLLLQ-GSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESL 93 (715)
Q Consensus 15 ~~~v~~l~l~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (715)
+.+++.|++++|.+. +.+|..+..+++|++|+|++|.+++. ..|..+++|++|++++|++++..|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999998 78888899999999999999999876 779999999999999999998788888889999999
Q ss_pred EccCCcCccCcc-ccccCCCCCCEEEeeccccccccC---ccccCCCCCCEEEcccCcceecC
Q 046340 94 GLGVNELVGKVP-GKLGSLSKLWILSVHYNSLSGEIP---SSFGNLSSLEFLSAAANQFVGQF 152 (715)
Q Consensus 94 ~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~ 152 (715)
++++|.+++... ..+..+++|+.|++++|.+++..+ ..|..+++|++|++++|.+....
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999987543 789999999999999999996555 47999999999999999987543
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.1e-16 Score=180.36 Aligned_cols=190 Identities=22% Similarity=0.206 Sum_probs=118.7
Q ss_pred EcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeCcCcccc
Q 046340 342 HLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDLSNNNLS 421 (715)
Q Consensus 342 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 421 (715)
++..|.+. ..++.|..+++|+.|+|++|.+. .++..+.++++|++|+|++|.++ .+|..|..+++|+.|+|++|+|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34445554 55778888899999999999886 44555558899999999999998 67788899999999999999998
Q ss_pred cccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcc-cccccccCCcccccCccc
Q 046340 422 GTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIR-LEELVMKGNFFQGNIPSS 500 (715)
Q Consensus 422 ~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~ 500 (715)
.+|..+..+..| +.|+|++|.++ .+|..|..+++|+.|+|++|.+++..|..+..+.. +..++|++|.+++.+|.
T Consensus 284 -~lp~~~~~l~~L-~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~- 359 (727)
T 4b8c_D 284 -SLPAELGSCFQL-KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH- 359 (727)
T ss_dssp -SCCSSGGGGTTC-SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_pred -ccChhhcCCCCC-CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-
Confidence 678888888888 88999999998 56777999999999999999999888888765433 34588999999987775
Q ss_pred CCCCCCCCEEeCCCC--------cccccCCccccCCCCCCEEeCCCCcccc
Q 046340 501 FSSLRGMQNLDLSRN--------NLSGRIPKYFENFFFLQNLNLSSNHFEG 543 (715)
Q Consensus 501 ~~~l~~L~~L~L~~N--------~l~~~~~~~~~~~~~L~~L~ls~N~l~~ 543 (715)
.|+.|+++.| .+.+..+..+..+..+....+++|-+.+
T Consensus 360 -----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 360 -----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp -----C-----------------------------------------CCCG
T ss_pred -----ccceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 4566777777 4444445555666667777888888754
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=2.5e-16 Score=140.63 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=58.7
Q ss_pred CCCCEEeCCCCCCC-ccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEE
Q 046340 40 SFLRVLDLKNNSFR-DEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILS 118 (715)
Q Consensus 40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 118 (715)
++|++|++++|.++ +..|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 23333444444444444444444433 3444444444455544444443444444445555555
Q ss_pred eeccccccc-cCccccCCCCCCEEEcccCcceecCC---ccccCCCCCCEEEee
Q 046340 119 VHYNSLSGE-IPSSFGNLSSLEFLSAAANQFVGQFP---ETLSELKMMRYISFG 168 (715)
Q Consensus 119 Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~L~ 168 (715)
+++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555554432 12344455555555555555544433 344455555555443
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=2.7e-16 Score=140.42 Aligned_cols=127 Identities=22% Similarity=0.234 Sum_probs=88.9
Q ss_pred CCeEEEEcCCCCCC-cccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEE
Q 046340 16 QRVTGLRLPSLLLQ-GSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLG 94 (715)
Q Consensus 16 ~~v~~l~l~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (715)
.+++.|++++|.++ +.++..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777777777776 56666777777777777777777655 5577777777777777777765666666677777777
Q ss_pred ccCCcCccC-ccccccCCCCCCEEEeeccccccccC---ccccCCCCCCEEEcc
Q 046340 95 LGVNELVGK-VPGKLGSLSKLWILSVHYNSLSGEIP---SSFGNLSSLEFLSAA 144 (715)
Q Consensus 95 L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~l~ 144 (715)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777653 23667777777777777777775444 356777777777664
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.3e-15 Score=138.74 Aligned_cols=112 Identities=22% Similarity=0.189 Sum_probs=85.3
Q ss_pred CCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCCCCCEEEe
Q 046340 40 SFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSV 119 (715)
Q Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 119 (715)
++|++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|.+++..+..|..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 67888888888888777777788888888888888887666666778888888888888887776667777777888888
Q ss_pred eccccccccCccccCCCCCCEEEcccCcceec
Q 046340 120 HYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQ 151 (715)
Q Consensus 120 s~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 151 (715)
++|++++..+..|..+++|++|++++|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 87777755555567777777777777776644
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=140.19 Aligned_cols=126 Identities=28% Similarity=0.318 Sum_probs=82.0
Q ss_pred EEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCc
Q 046340 20 GLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNE 99 (715)
Q Consensus 20 ~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 99 (715)
.+++++++++. +|..+. +.|++|+|++|.|+ .+|..|.++++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 45666666663 333332 46777777777776 344667777777777777777776666667777777777777777
Q ss_pred CccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcce
Q 046340 100 LVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFV 149 (715)
Q Consensus 100 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 149 (715)
++++.+.+|..+++|+.|+|++|+++...+..|..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 76666666666677777777776666544455666666666666666654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3e-15 Score=137.97 Aligned_cols=133 Identities=23% Similarity=0.302 Sum_probs=106.1
Q ss_pred CCEEeCcCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCccccccccc
Q 046340 410 LILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMK 489 (715)
Q Consensus 410 L~~L~L~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 489 (715)
.+.+++++|++. .+|..+. +.+ +.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSA-TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCC-cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356666666665 3343322 234 677777777776666677888899999999999987777778889999999999
Q ss_pred CCcccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 490 GNFFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 490 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
+|.+++..+..|..+++|+.|++++|.+++.+++.|..+++|++|++++|++.+.+|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998888888899999999999999998888888889999999999999987665
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=2.4e-15 Score=138.39 Aligned_cols=134 Identities=21% Similarity=0.238 Sum_probs=83.9
Q ss_pred ccccCCCCCCEEeCCCCCCCccCChhhcCCC-CCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCC
Q 046340 34 PHIGNLSFLRVLDLKNNSFRDEIPQEIGYLF-RLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLS 112 (715)
Q Consensus 34 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 112 (715)
..+.++++|++|++++|.++.. +. +..+. +|++|++++|++++. ..|..+++|++|++++|.+++..+..|..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3466777777788877777744 33 44443 777777777777754 5666777777777777777655555556677
Q ss_pred CCCEEEeeccccccccCc--cccCCCCCCEEEcccCcceecCCc---cccCCCCCCEEEeecccC
Q 046340 113 KLWILSVHYNSLSGEIPS--SFGNLSSLEFLSAAANQFVGQFPE---TLSELKMMRYISFGENKL 172 (715)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~L~~n~i 172 (715)
+|++|++++|+++ .+|. .+..+++|++|++++|.+...... .+..+++|+.|++++|.+
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777777765 3333 566666666666666666533222 245555555555555544
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.58 E-value=7.8e-13 Score=138.65 Aligned_cols=284 Identities=11% Similarity=0.038 Sum_probs=134.0
Q ss_pred cCCccccCCC-CCCEEEccCCcCccCccccccCCCCCCEEEeeccc---cccccCccccCCCCCCEEEcccCcceecCCc
Q 046340 79 QIPDNISHCV-NLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNS---LSGEIPSSFGNLSSLEFLSAAANQFVGQFPE 154 (715)
Q Consensus 79 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 154 (715)
+...+|.++. .|+.+.+.. .++.+...+|.++++|+.+.+..|. ++.....+|.++.+|+.+.+..+ +..+...
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3344455442 355555543 2444555555555555555555442 44344455555566665555432 3344455
Q ss_pred cccCCCCCCEEEeecccCcccCCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCC
Q 046340 155 TLSELKMMRYISFGENKLSGEIPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASN 234 (715)
Q Consensus 155 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~ 234 (715)
+|.++.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++ .+...+| ....|+.+.+..+... .....|..+..
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF-~~~~l~~i~ip~~~~~-i~~~af~~c~~ 206 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAF-TGTALTQIHIPAKVTR-IGTNAFSECFA 206 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT-TTCCCSEEEECTTCCE-ECTTTTTTCTT
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccc-cccceeEEEECCcccc-cccchhhhccc
Confidence 5566666666665433 23344455556666666665543 22 3444444 2345666655543222 34445555555
Q ss_pred CCEEEeecccceecccc-ccCcCCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhcccc
Q 046340 235 LMRLTIAKNGFSGRVPS-LENLYKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTR 313 (715)
Q Consensus 235 L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~ 313 (715)
++............... +..........+ .+.....
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~------------------------- 243 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALI------------------RYPSQRE------------------------- 243 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEE------------------ECCTTCC-------------------------
T ss_pred cceecccccccccccceeeccccccccccc------------------ccccccc-------------------------
Confidence 55555443322211110 000000000000 0000011
Q ss_pred CcEEEccccceeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccC
Q 046340 314 LRKLIVGNNQLFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDE 393 (715)
Q Consensus 314 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 393 (715)
+..+.+. +.++.+...+|.++..|+.+.+..+... +...+|.++++|+.+.+. +.+..+...+|.+|.+|+.+.+..
T Consensus 244 ~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 244 DPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp CSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred cceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 2222221 2233344455666666666666554332 555566666666666664 334445555666666666666654
Q ss_pred CcccccCCcccccCCCCCEEeCc
Q 046340 394 NMLEGSIPSSLGKCQNLILLDLS 416 (715)
Q Consensus 394 n~i~~~~~~~~~~~~~L~~L~L~ 416 (715)
+ ++.+...+|.+|.+|+.+.+.
T Consensus 321 ~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 321 G-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEC
T ss_pred c-ccEehHhHhhCCCCCCEEEEC
Confidence 3 444555556666666665553
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.54 E-value=1.1e-12 Score=137.66 Aligned_cols=336 Identities=11% Similarity=0.090 Sum_probs=184.9
Q ss_pred CccCccccccCCC-CCCEEEeeccccccccCccccCCCCCCEEEcccCc---ceecCCccccCCCCCCEEEeecccCccc
Q 046340 100 LVGKVPGKLGSLS-KLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQ---FVGQFPETLSELKMMRYISFGENKLSGE 175 (715)
Q Consensus 100 l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~---~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 175 (715)
++.+...+|.++. .|+.+.+..+ ++.+...+|.++++|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3445566777764 5888887653 665666778888888888777653 55566667777777777666544 4445
Q ss_pred CCccccCCCCCcEEEccCCccceecCcchhcCCCCCCEEEeeCccccccCCccccCCCCCCEEEeecccceeccccccCc
Q 046340 176 IPFSIYNLSSLTHFYFPFNQLQGSLPSDLGFTLPNLEVLNVGGNQFTGPIPASISNASNLMRLTIAKNGFSGRVPSLENL 255 (715)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~l 255 (715)
....|..+.+|+.+.+..+ +. .++...+..+..|+.+.+..+ ++.+....|.. .+|+.+.+..+...-...
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~----- 199 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTN----- 199 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTT-----
T ss_pred hhhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccc-----
Confidence 5556666777777776543 22 455555555666666666544 33233334432 345555554332221111
Q ss_pred CCCcEEEcccCCCCCCCCCCccccccccccCCCCCEEEccCCcccccCChhHhhccccCcEEEccccceeecCCccccCC
Q 046340 256 YKLQWVSISHNHLGNYGEKDNLEFVNSLVNASRLELLEISDNNFGGMLPEAVGNLSTRLRKLIVGNNQLFGNIPSGLRNL 335 (715)
Q Consensus 256 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 335 (715)
++..+.+++............ ...+.. .+.........+...
T Consensus 200 --------------------------af~~c~~l~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~~~~~ 241 (394)
T 4gt6_A 200 --------------------------AFSECFALSTITSDSESYPAI-DNVLYE-----------KSANGDYALIRYPSQ 241 (394)
T ss_dssp --------------------------TTTTCTTCCEEEECCSSSCBS-SSCEEE-----------ECTTSCEEEEECCTT
T ss_pred --------------------------hhhhccccceecccccccccc-cceeec-----------ccccccccccccccc
Confidence 333444444444333322110 000000 000000000112233
Q ss_pred CCCCEEEcCCceeeeecCccccCCCCccEEEccCCcccccCCccccCCCCCCeEeccCCcccccCCcccccCCCCCEEeC
Q 046340 336 VNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPANEFWGEIPSSIGNLTSLAILAFDENMLEGSIPSSLGKCQNLILLDL 415 (715)
Q Consensus 336 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L 415 (715)
..+..+.+.. .++.+...+|.++..|+.+.+..+.. .+...+|.++++|+.+.+. +.++.+...+|.+|.+|+.+++
T Consensus 242 ~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 242 REDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp CCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred cccceEEcCC-cceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEe
Confidence 4555566544 34446667888888888888865533 4566677788888888875 4455566677777788877776
Q ss_pred cCcccccccCccccccccccceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccc
Q 046340 416 SNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQG 495 (715)
Q Consensus 416 ~~n~l~~~~~~~~~~~~~l~~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 495 (715)
..+ ++ .+...+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++.++....
T Consensus 319 p~~-v~-------------------------~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 319 PEG-IT-------------------------QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp CTT-CC-------------------------EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred CCc-cc-------------------------EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh
Confidence 543 22 233456667777777777543 554556677777777777777765431
Q ss_pred cCcccCCCCCCCCEEeCCCCcc
Q 046340 496 NIPSSFSSLRGMQNLDLSRNNL 517 (715)
Q Consensus 496 ~~~~~~~~l~~L~~L~L~~N~l 517 (715)
..|....+|+.+.+..|.+
T Consensus 372 ---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 372 ---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ---HTCBCCCCC----------
T ss_pred ---hhhhccCCCCEEEeCCCCE
Confidence 4566667777777766544
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.8e-14 Score=132.54 Aligned_cols=133 Identities=18% Similarity=0.181 Sum_probs=72.6
Q ss_pred hcCCCCCcEEecCCCcCcccCCccccCC-CCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCC
Q 046340 60 IGYLFRLQILALHNNTFGGQIPDNISHC-VNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSL 138 (715)
Q Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 138 (715)
+..+.+|+.|++++|+++.. +. +..+ ++|++|++++|.+.+. ..|..+++|+.|++++|++++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 55566677777777766632 33 3333 3666666666666543 456666666666666666664433444556666
Q ss_pred CEEEcccCcceecCC-ccccCCCCCCEEEeecccCcccCCc---cccCCCCCcEEEccCCcc
Q 046340 139 EFLSAAANQFVGQFP-ETLSELKMMRYISFGENKLSGEIPF---SIYNLSSLTHFYFPFNQL 196 (715)
Q Consensus 139 ~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~---~l~~l~~L~~L~l~~n~i 196 (715)
++|++++|.+....+ ..+..+++|++|++++|.++...+. .+..+++|+.|+++.|.+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666666543322 2455555555555555555532211 244444455554444443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1e-13 Score=126.36 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=91.3
Q ss_pred ceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCC
Q 046340 436 IYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRN 515 (715)
Q Consensus 436 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 515 (715)
+.+++++|.++. +|..+ .++|++|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 567777777774 44444 277888999999998888888888999999999999999888888889999999999999
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 516 NLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 516 ~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
+++++.++.|..+++|++|+|++|++.+.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9998888889999999999999999987765
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.8e-16 Score=149.12 Aligned_cols=151 Identities=20% Similarity=0.218 Sum_probs=83.1
Q ss_pred CCCCCEEeCCCCCCCccCCh------hhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCcCccCccccccCCC
Q 046340 39 LSFLRVLDLKNNSFRDEIPQ------EIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNELVGKVPGKLGSLS 112 (715)
Q Consensus 39 l~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 112 (715)
...++.++++.+.+++..|. .|..+++|++|++++|++++ +| .+..+++|++|++++|.+. ..|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34444444444444443333 55556666666666666554 33 5555666666666666655 3344455555
Q ss_pred CCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCC-ccccCCCCCCEEEeecccCcccCCc----------ccc
Q 046340 113 KLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFP-ETLSELKMMRYISFGENKLSGEIPF----------SIY 181 (715)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~----------~l~ 181 (715)
+|+.|++++|++++ ++ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|. .+.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 66666666666653 22 45555666666666666654332 3455666666666666666544332 256
Q ss_pred CCCCCcEEEccCCcc
Q 046340 182 NLSSLTHFYFPFNQL 196 (715)
Q Consensus 182 ~l~~L~~L~l~~n~i 196 (715)
.+++|+.|+ ++.+
T Consensus 172 ~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 172 RLPNLKKLD--GMPV 184 (198)
T ss_dssp HCSSCSEEC--CGGG
T ss_pred hCCCcEEEC--Cccc
Confidence 666777665 4444
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=3.3e-16 Score=147.25 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=74.1
Q ss_pred hcCCCCCcEEecCCCcCcccCCc------cccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCcccc
Q 046340 60 IGYLFRLQILALHNNTFGGQIPD------NISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFG 133 (715)
Q Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 133 (715)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ .| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34445555555555555554444 55556666666666666554 33 5555566666666666655 3444455
Q ss_pred CCCCCCEEEcccCcceecCCccccCCCCCCEEEeecccCcccCC-ccccCCCCCcEEEccCCcccee
Q 046340 134 NLSSLEFLSAAANQFVGQFPETLSELKMMRYISFGENKLSGEIP-FSIYNLSSLTHFYFPFNQLQGS 199 (715)
Q Consensus 134 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~i~~~ 199 (715)
.+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+.
T Consensus 91 ~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 91 VADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555666666666665543 2 35555556666666666554322 3455566666666666655433
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.2e-13 Score=124.42 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=90.3
Q ss_pred ceEEccCCcccccCCcCCcCCCCCCceeccCCcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCCC
Q 046340 436 IYLDLSQNQLNGSLPPNFGILKNLGGIDISENKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSRN 515 (715)
Q Consensus 436 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 515 (715)
..+++++|.++ .+|..+. ++|++|+|++|++.+..|..|.++++|++|+|++|+++++.+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46778888776 4454443 78888999999998888888888999999999999999887778888999999999999
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCC
Q 046340 516 NLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 546 (715)
Q Consensus 516 ~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 546 (715)
++++++++.|..+++|+.|++++|+|.+.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9998888889999999999999999887654
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=4.8e-13 Score=121.82 Aligned_cols=103 Identities=21% Similarity=0.182 Sum_probs=57.5
Q ss_pred EEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCc
Q 046340 20 GLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNE 99 (715)
Q Consensus 20 ~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 99 (715)
.++++++.++. +|..+. +.|++|+|++|.|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 45555555554 233332 555666666666665555556666666666666666655545555555555555555555
Q ss_pred CccCccccccCCCCCCEEEeeccccc
Q 046340 100 LVGKVPGKLGSLSKLWILSVHYNSLS 125 (715)
Q Consensus 100 l~~~~~~~~~~l~~L~~L~Ls~n~l~ 125 (715)
++++.+..|..+++|+.|+|++|.++
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55555555555555555555555554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=8e-13 Score=120.73 Aligned_cols=104 Identities=22% Similarity=0.183 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCcccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCC
Q 046340 19 TGLRLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVN 98 (715)
Q Consensus 19 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 98 (715)
+.+++++++++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+++++.+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 3344443 66677777777776666666666666777777666666555555666666666666666
Q ss_pred cCccCccccccCCCCCCEEEeeccccc
Q 046340 99 ELVGKVPGKLGSLSKLWILSVHYNSLS 125 (715)
Q Consensus 99 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 125 (715)
++.++.+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666555555666666666666666655
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.36 E-value=1.5e-10 Score=120.67 Aligned_cols=58 Identities=5% Similarity=0.023 Sum_probs=29.3
Q ss_pred ccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCCCEEEee
Q 046340 108 LGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMMRYISFG 168 (715)
Q Consensus 108 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 168 (715)
+....+|+.+.+.. .++.+...+|.++.+|+.+.+..+ ++.+...+|.++ +|+.+.+.
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~ 99 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGM 99 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEEC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECC
Confidence 44445566665543 244444455666666666665432 444445555554 34444443
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.35 E-value=3.3e-10 Score=118.13 Aligned_cols=83 Identities=6% Similarity=-0.010 Sum_probs=57.9
Q ss_pred cccCCCCCCEEEccCCcCccCccccccCCCCCCEEEeeccccccccCccccCCCCCCEEEcccCcceecCCccccCCCCC
Q 046340 83 NISHCVNLESLGLGVNELVGKVPGKLGSLSKLWILSVHYNSLSGEIPSSFGNLSSLEFLSAAANQFVGQFPETLSELKMM 162 (715)
Q Consensus 83 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 162 (715)
.+....+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +..+...+|... +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 355667788888874 566677788999999999998754 665666778876 6777776543 455555666554 67
Q ss_pred CEEEeecc
Q 046340 163 RYISFGEN 170 (715)
Q Consensus 163 ~~L~L~~n 170 (715)
+.+.+..+
T Consensus 116 ~~i~lp~~ 123 (379)
T 4h09_A 116 DDFEFPGA 123 (379)
T ss_dssp SEEECCTT
T ss_pred ccccCCCc
Confidence 77777554
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=6.4e-14 Score=144.57 Aligned_cols=184 Identities=16% Similarity=0.134 Sum_probs=111.7
Q ss_pred CCCCCEEeCCCCCCCccCChhhcCC-----CCCcEEecCCCcCcccCCccc-cCCCCCCEEEccCCcCccCccccc----
Q 046340 39 LSFLRVLDLKNNSFRDEIPQEIGYL-----FRLQILALHNNTFGGQIPDNI-SHCVNLESLGLGVNELVGKVPGKL---- 108 (715)
Q Consensus 39 l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~---- 108 (715)
+++|++|+|++|.++......+..+ ++|++|+|++|.++......+ ..+++|++|+|++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567778888877765444444332 677888888887765433333 245677788888887765444443
Q ss_pred -cCCCCCCEEEeeccccccc----cCccccCCCCCCEEEcccCcceecC----CccccCCCCCCEEEeecccCcccCC--
Q 046340 109 -GSLSKLWILSVHYNSLSGE----IPSSFGNLSSLEFLSAAANQFVGQF----PETLSELKMMRYISFGENKLSGEIP-- 177 (715)
Q Consensus 109 -~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~L~~n~i~~~~~-- 177 (715)
...++|+.|+|++|.++.. ++..+..+++|++|+|++|.+.+.. +..+...++|++|+|++|.|++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3456788888888877642 3344466777888888888776432 3455667778888888888775332
Q ss_pred --ccccCCCCCcEEEccCCccceecCcchhcC--CCC--CCEEE--eeCcccc
Q 046340 178 --FSIYNLSSLTHFYFPFNQLQGSLPSDLGFT--LPN--LEVLN--VGGNQFT 222 (715)
Q Consensus 178 --~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~--l~~--L~~L~--L~~n~l~ 222 (715)
..+...++|++|++++|.+++.....+... ... ++.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 234456788888888888764333332211 111 66666 5555554
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=2.4e-13 Score=140.32 Aligned_cols=168 Identities=17% Similarity=0.112 Sum_probs=126.2
Q ss_pred CCCCcEEecCCCcCcccCCccccC-----CCCCCEEEccCCcCccCccccc-cCCCCCCEEEeeccccccccCccc----
Q 046340 63 LFRLQILALHNNTFGGQIPDNISH-----CVNLESLGLGVNELVGKVPGKL-GSLSKLWILSVHYNSLSGEIPSSF---- 132 (715)
Q Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~---- 132 (715)
++.|+.|+|++|.++......+.. .++|++|+|++|.+.+.....+ ..+++|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 578999999999998655555443 3799999999999875444444 346789999999999975444443
Q ss_pred -cCCCCCCEEEcccCcceecC----CccccCCCCCCEEEeecccCcccC----CccccCCCCCcEEEccCCccceecCcc
Q 046340 133 -GNLSSLEFLSAAANQFVGQF----PETLSELKMMRYISFGENKLSGEI----PFSIYNLSSLTHFYFPFNQLQGSLPSD 203 (715)
Q Consensus 133 -~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~l~~n~i~~~~~~~ 203 (715)
...++|++|++++|.++... +..+..+++|++|+|++|.+++.. +..+...++|+.|++++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 35689999999999987533 334577899999999999998643 445677889999999999997533222
Q ss_pred hh---cCCCCCCEEEeeCccccccCCcccc
Q 046340 204 LG---FTLPNLEVLNVGGNQFTGPIPASIS 230 (715)
Q Consensus 204 ~~---~~l~~L~~L~L~~n~l~~~~~~~l~ 230 (715)
+. ...++|++|+|++|.+++.....+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 22 2468999999999999865444443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=2.3e-11 Score=125.30 Aligned_cols=101 Identities=22% Similarity=0.166 Sum_probs=79.6
Q ss_pred EcCCC-CCCcccCccccCCCCCCEEeCCC-CCCCccCChhhcCCCCCcEEecCCCcCcccCCccccCCCCCCEEEccCCc
Q 046340 22 RLPSL-LLQGSLSPHIGNLSFLRVLDLKN-NSFRDEIPQEIGYLFRLQILALHNNTFGGQIPDNISHCVNLESLGLGVNE 99 (715)
Q Consensus 22 ~l~~~-~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 99 (715)
+.+++ +++. +|. +..+++|++|+|++ |.|+++.++.|.++++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 33444 5664 566 88888888888885 88888877888888888888888888888888888888888888888888
Q ss_pred CccCccccccCCCCCCEEEeeccccc
Q 046340 100 LVGKVPGKLGSLSKLWILSVHYNSLS 125 (715)
Q Consensus 100 l~~~~~~~~~~l~~L~~L~Ls~n~l~ 125 (715)
++++.+..|..++ |+.|+|++|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8877666676665 888888888766
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=6.4e-12 Score=129.45 Aligned_cols=108 Identities=22% Similarity=0.184 Sum_probs=83.9
Q ss_pred eEEccCC-cccccCCcCCcCCCCCCceeccC-CcCccccChhhhcCcccccccccCCcccccCcccCCCCCCCCEEeCCC
Q 046340 437 YLDLSQN-QLNGSLPPNFGILKNLGGIDISE-NKLSGEIPNSLGSCIRLEELVMKGNFFQGNIPSSFSSLRGMQNLDLSR 514 (715)
Q Consensus 437 ~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 514 (715)
.++++++ .++. +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|+|+++.|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4567776 6764 555 77778888888885 888877777788888888888888888888888888888888888888
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCCC
Q 046340 515 NNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPV 547 (715)
Q Consensus 515 N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 547 (715)
|+|++++++.|..++ |+.|+|++|+|.+.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 888877777777666 88888888888876653
No 153
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=123.66 Aligned_cols=70 Identities=26% Similarity=0.504 Sum_probs=57.8
Q ss_pred cCCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEeC
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSCA 715 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~~ 715 (715)
.+|...++||+|+||+||+|++.+ ...+..||||+++.......++|.+|+++|++++|||||+++|+|.
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~ 113 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCT 113 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 466777899999999999999853 2245689999997655555578999999999999999999999984
No 154
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.17 E-value=2e-11 Score=121.30 Aligned_cols=70 Identities=29% Similarity=0.509 Sum_probs=55.7
Q ss_pred cCCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEeC
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSCA 715 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~~ 715 (715)
++|...+.||+|+||+||+|++.+ ...+..||||+++..+....++|.+|+++|++++|||||+++|+|.
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~ 85 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCV 85 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEe
Confidence 467777899999999999999853 1234689999998655555678999999999999999999999984
No 155
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.11 E-value=7.4e-11 Score=117.78 Aligned_cols=69 Identities=23% Similarity=0.364 Sum_probs=53.5
Q ss_pred CCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEeC
Q 046340 647 GFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSCA 715 (715)
Q Consensus 647 ~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~~ 715 (715)
++...+.||+|+||+||+|++.+ +..+..||||+++.... ...++|.+|+.+|++++|||||+++|+|.
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~ 99 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVT 99 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEE
Confidence 34445789999999999999853 22445899999975433 33468999999999999999999999984
No 156
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.02 E-value=2.3e-10 Score=113.65 Aligned_cols=71 Identities=31% Similarity=0.441 Sum_probs=58.0
Q ss_pred HHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEeC
Q 046340 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSCA 715 (715)
Q Consensus 640 ~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~~ 715 (715)
.|+...+++...+.||+|+||+||+|++.+ .||||+++.... ...+.|.+|+.+|++++|||||+++|||.
T Consensus 30 ~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~-----~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~ 102 (307)
T 3omv_A 30 YWEIEASEVMLSTRIGSGSFGTVYKGKWHG-----DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT 102 (307)
T ss_dssp CCBCCTTSCCEEEECCCCSSSEEEEEESSS-----EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred CcEEcHHHeEEeeEEeeCCCcEEEEEEECC-----cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE
Confidence 345556678888999999999999999743 489999975432 23467999999999999999999999984
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=6.1e-10 Score=113.64 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCCCCCEEEeecccCcccCCcccc---CCCCCcEEEccCCccceecCcchh---cCCCCCCEEEeeCccccccCCccccC
Q 046340 158 ELKMMRYISFGENKLSGEIPFSIY---NLSSLTHFYFPFNQLQGSLPSDLG---FTLPNLEVLNVGGNQFTGPIPASISN 231 (715)
Q Consensus 158 ~l~~L~~L~L~~n~i~~~~~~~l~---~l~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~l~~ 231 (715)
.+++|++|++.+|.+.+..+..+. .+++|+.|+++.|.+.+.-+..+. ..+++|+.|+++.|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 456777777777776543322222 466788888887777653222222 13578888888888776543333433
Q ss_pred -CCCCCEEEeeccc
Q 046340 232 -ASNLMRLTIAKNG 244 (715)
Q Consensus 232 -~~~L~~L~L~~n~ 244 (715)
+ ..+++++.+.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3567777665
No 158
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=98.92 E-value=1e-09 Score=110.41 Aligned_cols=67 Identities=25% Similarity=0.339 Sum_probs=57.2
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..|+..+.||+|+||.||+|+...+ +..||||+++.......+.+.+|+.+|++++|||||++++++
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~t--g~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~ 140 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSS--GKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY 140 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTT--CCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCC--CCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 4577788999999999999997654 348999999765555556789999999999999999999986
No 159
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=98.90 E-value=1.1e-09 Score=111.40 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=64.2
Q ss_pred chHHHHHHhhcCCccccccCcCCCceEEEEEECCC---CceeEEEEEEeeccCCc-chHHHHHHHHHHhcCCC-CCcceE
Q 046340 636 VSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVKVLNLQHRG-ASKSFMAQCQALRSVRH-RNLVKI 710 (715)
Q Consensus 636 ~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~---~~~~~~avk~l~~~~~~-~~~~~~~e~~~l~~~~h-~niv~l 710 (715)
+..++|+...++|...+.||+|+||+||+|++.+. ..++.||||++...... ..++|.+|+.+|.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 33456777788899999999999999999997643 24467999999765432 34579999999999965 899999
Q ss_pred EEEeC
Q 046340 711 ITSCA 715 (715)
Q Consensus 711 ~g~~~ 715 (715)
+|+|.
T Consensus 134 ~g~~~ 138 (353)
T 4ase_A 134 LGACT 138 (353)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99983
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=1.3e-09 Score=111.29 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=54.5
Q ss_pred CCCCCcEEEccCCccceecCcchhc--CCCCCCEEEeeCccccccC----CccccCCCCCCEEEeecccceecccc-ccC
Q 046340 182 NLSSLTHFYFPFNQLQGSLPSDLGF--TLPNLEVLNVGGNQFTGPI----PASISNASNLMRLTIAKNGFSGRVPS-LEN 254 (715)
Q Consensus 182 ~l~~L~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~ 254 (715)
.+++|+.|++.+|.+.+..+..++. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++..... +..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 4688888888888876544333332 4678888888888887532 23335568888888888877643221 222
Q ss_pred cCCCcEEEcccCC
Q 046340 255 LYKLQWVSISHNH 267 (715)
Q Consensus 255 l~~L~~L~l~~n~ 267 (715)
.- ...++++.+.
T Consensus 330 al-g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL-PMKIDVSDSQ 341 (362)
T ss_dssp HC-CSEEECCSBC
T ss_pred Hc-CCEEEecCCc
Confidence 10 3457777765
No 161
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=98.89 E-value=1.4e-09 Score=108.25 Aligned_cols=67 Identities=27% Similarity=0.455 Sum_probs=53.7
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc-chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG-ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~-~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++|+..+.||+|+||+||+|+...++ ..||||+++..... ..+.+.+|+.+|++++|||||++++++
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~--~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~ 72 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDD--CNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAW 72 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTC--CEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCC--CEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 46888899999999999999976543 48999999754432 235789999999999999999999975
No 162
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=98.88 E-value=2.3e-09 Score=105.58 Aligned_cols=64 Identities=28% Similarity=0.430 Sum_probs=52.4
Q ss_pred ccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 649 SLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 649 ~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...++||+|+||.||+|+...+ +..||||.+..... ...+.|.+|+.+|++++|||||+++|++
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~--~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~ 94 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTET--TVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSW 94 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTT--CCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCC--CeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 4456799999999999997655 34899999975432 2345799999999999999999999975
No 163
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=98.87 E-value=2.3e-09 Score=110.88 Aligned_cols=68 Identities=25% Similarity=0.333 Sum_probs=58.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|+...+ +..||||++........+.+.+|+.+|++++|||||++++++
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~t--g~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~ 217 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSS--GKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY 217 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTT--CCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCC--CCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 35688889999999999999997654 348999999866555566799999999999999999999986
No 164
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=98.84 E-value=3.4e-09 Score=106.84 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=50.5
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||+||+|+.... +..||||++..... ...+.|.+|+.+|++++|||||++++++
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~--~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~ 92 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTED--GRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESF 92 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTT--CCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCC--CCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEE
Confidence 35788889999999999999997654 34899999975432 2245799999999999999999999975
No 165
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=98.83 E-value=1.7e-09 Score=108.20 Aligned_cols=61 Identities=30% Similarity=0.504 Sum_probs=47.8
Q ss_pred CCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHH--HHHHHHhcCCCCCcceEEEEe
Q 046340 647 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFM--AQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 647 ~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~--~e~~~l~~~~h~niv~l~g~~ 714 (715)
++...+.||+|+||.||+|++.+ ..||||+++.. ..+++. +|+..+.+++|||||+++|+|
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~~g----~~VAvK~l~~~---~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~ 66 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKWRG----EEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAAD 66 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEETT----EEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEECC----EEEEEEEECcc---chhhHHHHHHHHHHhcCCCCCCCcEEEEE
Confidence 46677899999999999999853 28999999643 233444 455556789999999999997
No 166
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=98.81 E-value=4.9e-09 Score=102.26 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=51.6
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||+||+|+...+ +..||||.++... ....+.+.+|+.+|++++|||||++++++
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~--~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~ 82 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTT--GQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVI 82 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTT--CCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCC--CCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEE
Confidence 36899999999999999999996544 4589999997542 22345799999999999999999999975
No 167
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=98.78 E-value=5.1e-09 Score=103.70 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=56.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc---CCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ---HRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~---~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||+||+|+...+ +..||||.+... .....+.+.+|+.+|++++|||||+++++.
T Consensus 31 ~~dy~i~~~lG~G~fg~V~~a~~~~~--~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~ 101 (311)
T 4aw0_A 31 PEDFKFGKILGEGSFSTVVLARELAT--SREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTF 101 (311)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred ccccEEEEEEecccCeEEEEEEECCC--CCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 35789999999999999999997654 348999999743 233456799999999999999999999874
No 168
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.70 E-value=6e-10 Score=107.48 Aligned_cols=153 Identities=18% Similarity=0.111 Sum_probs=80.4
Q ss_pred CCcccceeeCCCCCCeEEEEcCC---CCCCcccC-ccccCC---------CCCCEEeCCCCCCCccCChhhcCCCCCcE-
Q 046340 3 FCQWKGVTCSPRHQRVTGLRLPS---LLLQGSLS-PHIGNL---------SFLRVLDLKNNSFRDEIPQEIGYLFRLQI- 68 (715)
Q Consensus 3 ~c~~~~~~~~~~~~~v~~l~l~~---~~l~~~~~-~~~~~l---------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~- 68 (715)
.|+|.|++|.++..+|..+-..+ ..+++.+. ..+..+ +.-+.|||+. |...+.|+.
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~----------l~~dp~L~~~ 146 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKG----------LRSDPDLVAQ 146 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTT----------GGGCHHHHHT
T ss_pred HHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHH----------cCCCcchhhc
Confidence 48999999998766775554433 22223332 111111 1223444432 333334443
Q ss_pred -EecCCCcCcc---cCCccccCCCCCCEEEccCCcCccCc--cccccCCCCCCEEEeeccccccc-cCccccCCCCCCEE
Q 046340 69 -LALHNNTFGG---QIPDNISHCVNLESLGLGVNELVGKV--PGKLGSLSKLWILSVHYNSLSGE-IPSSFGNLSSLEFL 141 (715)
Q Consensus 69 -L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 141 (715)
++++.|+... ..+....++++|++|+|++|+++++. +..+..+++|+.|+|++|++++. ....+..+ +|++|
T Consensus 147 ~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L 225 (267)
T 3rw6_A 147 NIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEEL 225 (267)
T ss_dssp TCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEE
T ss_pred CccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceE
Confidence 4555553321 11111235667777777777776532 34555677777777777776643 11223333 77777
Q ss_pred EcccCcceecCC-------ccccCCCCCCEEE
Q 046340 142 SAAANQFVGQFP-------ETLSELKMMRYIS 166 (715)
Q Consensus 142 ~l~~n~~~~~~~-------~~l~~l~~L~~L~ 166 (715)
++++|.+.+..+ ..+..+++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 777777765333 1345667777664
No 169
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=98.69 E-value=1.9e-08 Score=104.18 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=55.3
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|+...+ +..||||+++.... ...+.+.+|+.+|++++|||||++++++
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t--~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~ 122 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLT--GQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDIL 122 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTT--CCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEC
T ss_pred CCeEEEEEEecccCeEEEEEEECCC--CCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeee
Confidence 4688889999999999999997654 34899999964432 2235688999999999999999999874
No 170
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=98.64 E-value=1.6e-08 Score=101.47 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=52.4
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|+.... +..||||+++.... +.+|+.+|++++|||||++++++
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~--g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~ 119 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQT--GFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAV 119 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCC--CCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEE
Confidence 45677778899999999999997654 34899999975432 25799999999999999999986
No 171
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=98.63 E-value=4.4e-08 Score=99.24 Aligned_cols=80 Identities=24% Similarity=0.265 Sum_probs=64.9
Q ss_pred cccchHHHHHHhhcC----------CccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC
Q 046340 633 VLRVSYQNLIKATDG----------FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV 702 (715)
Q Consensus 633 ~~~~~~~~~~~~~~~----------f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~ 702 (715)
...+++++++++++. |...+.||+|+||.||+|+....+ ..||||++........+.+.+|+.+++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g--~~vavK~~~~~~~~~~~~~~~E~~~l~~l 99 (321)
T 2c30_A 22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSG--RQVAVKMMDLRKQQRRELLFNEVVIMRDY 99 (321)
T ss_dssp ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEETTTCCSHHHHHHHHHHHTTC
T ss_pred CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCC--cEEEEEEEeccchhHHHHHHHHHHHHHhC
Confidence 356788888887764 556678999999999999976443 38999999866655567899999999999
Q ss_pred CCCCcceEEEEe
Q 046340 703 RHRNLVKIITSC 714 (715)
Q Consensus 703 ~h~niv~l~g~~ 714 (715)
+|||||+++++|
T Consensus 100 ~h~niv~~~~~~ 111 (321)
T 2c30_A 100 QHFNVVEMYKSY 111 (321)
T ss_dssp CCTTBCCEEEEE
T ss_pred CCCCcceEEEEE
Confidence 999999999986
No 172
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=3.8e-09 Score=97.20 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=67.7
Q ss_pred ccCccccCCCCCCEEeCCCC-CCCcc----CChhhcCCCCCcEEecCCCcCcccC----CccccCCCCCCEEEccCCcCc
Q 046340 31 SLSPHIGNLSFLRVLDLKNN-SFRDE----IPQEIGYLFRLQILALHNNTFGGQI----PDNISHCVNLESLGLGVNELV 101 (715)
Q Consensus 31 ~~~~~~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~ 101 (715)
.+...+...+.|++|+|++| .|.+. +...+...+.|++|+|++|.+.... ...+...++|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34556677788888888888 77653 2344555677777777777776432 223444566777777777665
Q ss_pred cC----ccccccCCCCCCEEEe--eccccccc----cCccccCCCCCCEEEcccCcc
Q 046340 102 GK----VPGKLGSLSKLWILSV--HYNSLSGE----IPSSFGNLSSLEFLSAAANQF 148 (715)
Q Consensus 102 ~~----~~~~~~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~l~~n~~ 148 (715)
+. +..++...+.|++|+| ++|.+... +...+...++|++|++++|.+
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 43 2233445556666666 55655432 122233334555555555444
No 173
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=98.62 E-value=2.4e-08 Score=101.24 Aligned_cols=77 Identities=36% Similarity=0.568 Sum_probs=64.9
Q ss_pred cchHHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 635 RVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 635 ~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+++.+++.++++|...+.||+|+||.||+|+..++ ..||||++........+.+.+|+.++++++|||||+++|+|
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 104 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG---AKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFC 104 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTC---CEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEEC
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCC---CEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 455566778899999999999999999999997543 38999999766555567899999999999999999999987
No 174
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=98.61 E-value=7e-09 Score=102.70 Aligned_cols=69 Identities=28% Similarity=0.309 Sum_probs=50.2
Q ss_pred cCCccccccCcCCCceEEEEEEC-CCCceeEEEEEEeeccC--CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQH--RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~~~~avk~l~~~~--~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++|+..+.||+|+||+||+|+.. ++.++..||||.++... ......+.+|+.+|++++|||||++++++
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~ 95 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAF 95 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEE
Confidence 56888999999999999999863 23345689999996432 12234688999999999999999999975
No 175
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=98.60 E-value=8e-08 Score=96.72 Aligned_cols=79 Identities=30% Similarity=0.484 Sum_probs=66.5
Q ss_pred ccccchHHHHHHhhcCCccc------cccCcCCCceEEEEEECCCCceeEEEEEEeeccC----CcchHHHHHHHHHHhc
Q 046340 632 SVLRVSYQNLIKATDGFSLE------NLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH----RGASKSFMAQCQALRS 701 (715)
Q Consensus 632 ~~~~~~~~~~~~~~~~f~~~------~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~----~~~~~~~~~e~~~l~~ 701 (715)
....|++++++.++.+|... +.||+|+||.||+|+..+. .||||.+.... ....+.+.+|+.++++
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~----~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~ 86 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNT----TVAVKKLAAMVDITTEELKQQFDQEIKVMAK 86 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSC----EEEEEEECCCTTSCTTTHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECCc----eEEEEEEecccCcchHHHHHHHHHHHHHHHh
Confidence 45678999999999999887 8899999999999996432 89999996432 2234578999999999
Q ss_pred CCCCCcceEEEEe
Q 046340 702 VRHRNLVKIITSC 714 (715)
Q Consensus 702 ~~h~niv~l~g~~ 714 (715)
++|||||+++|++
T Consensus 87 l~h~~i~~~~~~~ 99 (307)
T 2nru_A 87 CQHENLVELLGFS 99 (307)
T ss_dssp CCCTTBCCEEEEE
T ss_pred cCCCCeEEEEEEE
Confidence 9999999999986
No 176
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=98.52 E-value=5.9e-08 Score=98.63 Aligned_cols=81 Identities=38% Similarity=0.624 Sum_probs=67.2
Q ss_pred cccccchHHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcce
Q 046340 631 ASVLRVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVK 709 (715)
Q Consensus 631 ~~~~~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~ 709 (715)
.....++++++..+.++|...+.||+|+||.||+|+..++ ..||||++..... .....+.+|+.++++++|||||+
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~ 91 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADG---TLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 91 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSS---CCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCC
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCC---CEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccc
Confidence 4456789999999999999999999999999999986543 3799999975432 22347999999999999999999
Q ss_pred EEEEe
Q 046340 710 IITSC 714 (715)
Q Consensus 710 l~g~~ 714 (715)
++|+|
T Consensus 92 ~~~~~ 96 (326)
T 3uim_A 92 LRGFC 96 (326)
T ss_dssp CCEEE
T ss_pred eEEEE
Confidence 99987
No 177
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=98.51 E-value=7.3e-08 Score=105.08 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=57.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+.... +..||+|.+........+.+.+|+.+|+.++|||||++++++
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~t--g~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~ 223 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERAT--GNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF 223 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCC--CCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 35788889999999999999997654 448999999765444456789999999999999999999875
No 178
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=98.49 E-value=1.3e-07 Score=94.61 Aligned_cols=70 Identities=29% Similarity=0.447 Sum_probs=57.7
Q ss_pred hcCCccccccCcCCCceEEEEEEC--CCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~--~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|++. +...+..||||++........+.|.+|+.++++++|||||+++|+|
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 80 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVC 80 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 456777899999999999999964 2224568999999765444456799999999999999999999987
No 179
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=98.46 E-value=1.6e-07 Score=94.55 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=57.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||+|.+........+.|.+|+.++++++|||||+++|++
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~--~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 76 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETG--EVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVL 76 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTC--CEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCC--cEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEE
Confidence 356777899999999999999986553 38999999655444456799999999999999999999986
No 180
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=98.46 E-value=1.9e-07 Score=95.08 Aligned_cols=68 Identities=26% Similarity=0.423 Sum_probs=55.7
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||+++.... ...+.+.+|+.++++++|||||+++++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~--~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~ 73 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDD--CNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAW 73 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTC--CEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEE
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCC--cEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 356788899999999999999986443 3899999975432 3346799999999999999999999986
No 181
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=5.5e-08 Score=89.35 Aligned_cols=110 Identities=12% Similarity=0.179 Sum_probs=89.4
Q ss_pred CCeEEEEcCCC-CCCcc----cCccccCCCCCCEEeCCCCCCCcc----CChhhcCCCCCcEEecCCCcCcccC----Cc
Q 046340 16 QRVTGLRLPSL-LLQGS----LSPHIGNLSFLRVLDLKNNSFRDE----IPQEIGYLFRLQILALHNNTFGGQI----PD 82 (715)
Q Consensus 16 ~~v~~l~l~~~-~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~----~~ 82 (715)
..++.|+|++| .+... +...+...+.|++|+|++|.|.+. +...+...+.|++|+|++|.|.... ..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 68999999999 99874 455677889999999999999764 3444566789999999999998643 55
Q ss_pred cccCCCCCCEEEc--cCCcCccCcc----ccccCCCCCCEEEeeccccc
Q 046340 83 NISHCVNLESLGL--GVNELVGKVP----GKLGSLSKLWILSVHYNSLS 125 (715)
Q Consensus 83 ~~~~l~~L~~L~L--~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~ 125 (715)
.+...++|++|+| ++|.+..... ..+...+.|++|+|++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6778889999999 8899875433 44556789999999999876
No 182
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=98.41 E-value=1.3e-07 Score=101.78 Aligned_cols=73 Identities=23% Similarity=0.540 Sum_probs=60.4
Q ss_pred HHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEeC
Q 046340 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSCA 715 (715)
Q Consensus 640 ~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~~ 715 (715)
+++....+|...+.||+|+||.||+|++...+ ..||||+++.... ..++|.+|+.+|++++|||||+++|+|.
T Consensus 214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~--~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~ 286 (495)
T 1opk_A 214 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYS--LTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCT 286 (495)
T ss_dssp CCBCCGGGEEEEEESGGGTTSSEEEEEEGGGT--EEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred ccccCHHHceeeeEecCCCCeEEEEEEEcCCC--eEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEe
Confidence 34445667888899999999999999987543 4899999975433 3578999999999999999999999983
No 183
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=98.41 E-value=3.6e-08 Score=103.80 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=63.0
Q ss_pred chHHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEE
Q 046340 636 VSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIIT 712 (715)
Q Consensus 636 ~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g 712 (715)
+.+.++....++|...+.||+|+||.||+|+...++ ..||||++.... ......+.+|+.++.+++|||||++++
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~--~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~ 141 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNAD--KVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHY 141 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCC--cEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 345667777899999999999999999999987653 489999996421 222345899999999999999999999
Q ss_pred Ee
Q 046340 713 SC 714 (715)
Q Consensus 713 ~~ 714 (715)
+|
T Consensus 142 ~~ 143 (437)
T 4aw2_A 142 AF 143 (437)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 184
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=98.40 E-value=2.4e-07 Score=95.55 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=64.6
Q ss_pred cchHHHHHHhhcCCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccCC-cchHHHHHHHHHHhcC-CCCCcce
Q 046340 635 RVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQHR-GASKSFMAQCQALRSV-RHRNLVK 709 (715)
Q Consensus 635 ~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~-~h~niv~ 709 (715)
.+...+++...++|...+.||+|+||.||+|++.+ ...+..||||+++.... ...+.+.+|++++.++ +|||||+
T Consensus 11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~ 90 (359)
T 3vhe_A 11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 90 (359)
T ss_dssp CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 34556777788899999999999999999998642 23456899999975433 2235799999999999 8999999
Q ss_pred EEEEe
Q 046340 710 IITSC 714 (715)
Q Consensus 710 l~g~~ 714 (715)
++|+|
T Consensus 91 ~~~~~ 95 (359)
T 3vhe_A 91 LLGAC 95 (359)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 99987
No 185
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=98.40 E-value=2.2e-07 Score=99.00 Aligned_cols=72 Identities=28% Similarity=0.485 Sum_probs=60.9
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++++...++|...+.||+|+||.||+|++.++ ..||||+++... ...++|.+|+.+|++++|||||+++|+|
T Consensus 181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~---~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~ 252 (454)
T 1qcf_A 181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNKH---TKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVV 252 (454)
T ss_dssp TCSBCCGGGEEEEEEEECCSSEEEEEEEETTT---EEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred cceeechHHeEEEEEcccCCceEEEEEEECCc---cEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEE
Confidence 44566677888889999999999999998654 379999997543 3467899999999999999999999987
No 186
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=98.39 E-value=3.9e-07 Score=91.05 Aligned_cols=68 Identities=22% Similarity=0.367 Sum_probs=57.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|+.... +..||||.+........+.+.+|+.++++++|||||++++++
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 86 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVAT--GQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSY 86 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTT--CCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCC--CcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEE
Confidence 45788889999999999999986444 348999999766555567799999999999999999999976
No 187
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=98.39 E-value=3.3e-07 Score=93.69 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=58.1
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEEC-CCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILN-HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
+.+....+.|...+.||+|+||.||+|+.+ +..++..||||.+.... ....+.+|+.+|..+ +|||||++++++
T Consensus 14 ~~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~ 89 (361)
T 4f9c_A 14 EAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCF 89 (361)
T ss_dssp HHSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEE
T ss_pred HhcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 334445677999999999999999999853 22345689999996442 346788999999998 799999998764
No 188
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=98.37 E-value=2.2e-07 Score=98.76 Aligned_cols=70 Identities=27% Similarity=0.452 Sum_probs=58.8
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+++....+|...+.||+|+||.||+|++.+. .||||.++... ..+.|.+|+.+|++++|||||+++|+|
T Consensus 186 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~----~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~ 255 (450)
T 1k9a_A 186 SGWALNMKELKLLQTIGKGEFGDVMLGDYRGN----KVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVI 255 (450)
T ss_dssp TTCBCCGGGEEEEEEEEECSSEEEEEEEETTE----EEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred cccccChHHeEEEeeecCcCCeeEEEEEecCC----eEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEE
Confidence 34455567788889999999999999998533 89999997543 356899999999999999999999986
No 189
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=98.36 E-value=2.8e-07 Score=98.03 Aligned_cols=72 Identities=26% Similarity=0.484 Sum_probs=60.2
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+.++...++|...+.||+|+||.||+|++.++ . .||||+++.... ..++|.+|+.+|++++|||||+++|+|
T Consensus 177 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~--~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~ 248 (452)
T 1fmk_A 177 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-T--RVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVV 248 (452)
T ss_dssp TCSBCCGGGEEEEEEEEECSSCEEEEEEETTT-E--EEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cccccChhHceeeeeecCCCCeEEEEEEECCC-c--eEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 34555567788889999999999999998754 3 699999975542 356899999999999999999999987
No 190
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=98.36 E-value=6.3e-07 Score=89.34 Aligned_cols=67 Identities=24% Similarity=0.473 Sum_probs=55.7
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|+...++ ..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 70 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETH--EIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVL 70 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTC--CEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCC--ceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEE
Confidence 46778899999999999999976543 4899999975432 2246788999999999999999999986
No 191
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=98.34 E-value=1.8e-07 Score=96.98 Aligned_cols=73 Identities=30% Similarity=0.550 Sum_probs=58.7
Q ss_pred HHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEeC
Q 046340 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSCA 715 (715)
Q Consensus 641 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~~ 715 (715)
++...++|...+.||+|+||.||+|++..++. .||||.++.... ...++|.+|+.+|++++|||||+++|+|.
T Consensus 109 ~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~ 182 (377)
T 3cbl_A 109 WVLNHEDLVLGEQIGRGNFGEVFSGRLRADNT--LVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCT 182 (377)
T ss_dssp TBCCGGGEEEEEEEEEETTEEEEEEEETTTCC--EEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEEC
T ss_pred cEEchHHeEEeeEeccCCCCeEEEEEEecCCe--EEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 44445678888999999999999999875433 899999975432 22346889999999999999999999973
No 192
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=98.34 E-value=4.4e-07 Score=93.77 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=48.8
Q ss_pred ccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 649 SLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 649 ~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...+.||+|+||.||+|+...++ ..||+|.++.......+.|.+|+.++++++|||||++++++
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g--~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~ 155 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATG--LKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAF 155 (373)
T ss_dssp EEEEECC-----CEEEEEETTTC--CEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred ecceEEecCcCEEEEEEEEcCCC--cEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 34567999999999999976543 48999999865444556899999999999999999999986
No 193
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=98.34 E-value=4.8e-07 Score=89.45 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=58.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+....+ ..||+|++........+.+.+|+.++++++|||||++++++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 75 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTR--IRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETF 75 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCC--cEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 346788899999999999999976653 48999999866555567899999999999999999999986
No 194
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=98.34 E-value=3.5e-07 Score=91.99 Aligned_cols=72 Identities=26% Similarity=0.394 Sum_probs=57.4
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+++.....+|...+.||+|+||.||+|+..+. .||||.+..... ...++|.+|+.++++++|||||++++++
T Consensus 30 ~~~~i~~~~y~i~~~lG~G~~g~V~~~~~~~~----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 103 (309)
T 3p86_A 30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGS----DVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103 (309)
T ss_dssp --CBCCGGGEEEEEEEEECSSEEEEEEEETTE----EEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccccCChhHceeeeEeecCCCeEEEEEEECCC----cEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 34445567788889999999999999987432 799999975432 2235789999999999999999999986
No 195
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=98.33 E-value=3e-07 Score=91.52 Aligned_cols=74 Identities=24% Similarity=0.561 Sum_probs=61.3
Q ss_pred HHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 638 YQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 638 ~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+++++....+|...+.||+|+||.||+|+....+ ..||+|.+.... ...+.+.+|+.++++++|||||++++++
T Consensus 5 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 78 (288)
T 3kfa_A 5 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYS--LTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVC 78 (288)
T ss_dssp CCTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGT--EEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhcccccccceeEEeecCCCCceeEEEeEecCCC--EEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 3455566778888999999999999999986543 489999997543 3356799999999999999999999986
No 196
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=98.33 E-value=4.7e-07 Score=93.48 Aligned_cols=70 Identities=27% Similarity=0.430 Sum_probs=56.0
Q ss_pred hcCCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|++.+ ...+..||||+++... .....++.+|+.++++++|||||+++|++
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~ 143 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVS 143 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 4567788999999999999999753 2244589999996443 23345789999999999999999999986
No 197
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=98.33 E-value=7.4e-07 Score=88.57 Aligned_cols=68 Identities=31% Similarity=0.450 Sum_probs=55.9
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcc-------hHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGA-------SKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~-------~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++. .||||++....... .+.+.+|+.++.+++|||||+++|++
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 92 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKS--VVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLM 92 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCC--EEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred hccceehhccccCCceeEEEEEEcCCce--EEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheee
Confidence 4678888999999999999999865534 89999996443211 15789999999999999999999986
No 198
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=98.33 E-value=3.7e-07 Score=92.52 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=57.4
Q ss_pred HhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 643 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 643 ~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...++|...+.||+|+||.||+|+...++ ..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~ 83 (328)
T 3fe3_A 12 PHIGNYRLLKTIGKGNFAKVKLARHILTG--REVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVI 83 (328)
T ss_dssp CEETTEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CccCCEEEEEEEeeCCCEEEEEEEECCCC--CEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 34567888999999999999999975443 4899999975432 2345688999999999999999999986
No 199
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=98.33 E-value=6.3e-07 Score=90.49 Aligned_cols=68 Identities=22% Similarity=0.499 Sum_probs=43.5
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...+ +..||||+++.... ...+.+.+|+.++++++|||||++++++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 72 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTT--GVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVI 72 (317)
T ss_dssp ---------------CEEEEEECSSS--CCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCC--CcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEE
Confidence 45788889999999999999996544 34899999975432 3346789999999999999999999986
No 200
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=98.33 E-value=1.1e-06 Score=87.81 Aligned_cols=66 Identities=20% Similarity=0.342 Sum_probs=53.2
Q ss_pred CCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 647 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 647 ~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+|.....||+|+||.||+|+...++ ..||||.+........+.+.+|+.++++++|||||+++|++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 88 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQ--VRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSF 88 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTC--CEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred CCCCcEEEeecCcEEEEEEEECCCC--eEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEE
Confidence 3444568999999999999976543 48999999765554557799999999999999999999986
No 201
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=98.33 E-value=6e-07 Score=89.78 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=52.4
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--------------------------cchHHHHHHHHH
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--------------------------GASKSFMAQCQA 698 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--------------------------~~~~~~~~e~~~ 698 (715)
.++|...+.||+|+||.||+|+...++ ..||||.+..... ...+.+.+|+.+
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~ 89 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDN--TYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAI 89 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTT--EEEEEEEEECC-------------------------------CHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCC--cEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHH
Confidence 467888899999999999999976543 4899999964321 112468999999
Q ss_pred HhcCCCCCcceEEEEe
Q 046340 699 LRSVRHRNLVKIITSC 714 (715)
Q Consensus 699 l~~~~h~niv~l~g~~ 714 (715)
+++++|||||++++++
T Consensus 90 l~~l~h~~iv~~~~~~ 105 (298)
T 2zv2_A 90 LKKLDHPNVVKLVEVL 105 (298)
T ss_dssp HHTCCCTTBCCEEEEE
T ss_pred HHhCCCCCCCeEEEEE
Confidence 9999999999999986
No 202
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=98.32 E-value=4.5e-07 Score=92.49 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=56.6
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+...++ ..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~--~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~ 77 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTG--EMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVL 77 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTC--CEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCC--CEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 4577888999999999999999975543 4899999975432 2345789999999999999999999986
No 203
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=98.32 E-value=3.5e-07 Score=94.57 Aligned_cols=70 Identities=24% Similarity=0.495 Sum_probs=55.8
Q ss_pred hcCCccccccCcCCCceEEEEEECC-CCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+... +..+..||||.++.... ...++|.+|+.++++++|||||+++|+|
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~ 115 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV 115 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 4578888999999999999998752 12345799999975432 2345799999999999999999999987
No 204
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=98.32 E-value=3.2e-07 Score=95.70 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=62.0
Q ss_pred hHHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc---CCcchHHHHHHHHHHhcCCCCCcceEEEE
Q 046340 637 SYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ---HRGASKSFMAQCQALRSVRHRNLVKIITS 713 (715)
Q Consensus 637 ~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~---~~~~~~~~~~e~~~l~~~~h~niv~l~g~ 713 (715)
..++++...++|...+.||+|+||.||+|+...++ ..||+|++... .....+.+.+|+.+++.++|||||+++++
T Consensus 60 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~--~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~ 137 (410)
T 3v8s_A 60 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTR--KVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYA 137 (410)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEE
T ss_pred HHHhcccCccccEEEEEEEcCCCEEEEEEEECCCC--cEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 34566677889999999999999999999987653 48999999642 12233468899999999999999999998
Q ss_pred e
Q 046340 714 C 714 (715)
Q Consensus 714 ~ 714 (715)
+
T Consensus 138 ~ 138 (410)
T 3v8s_A 138 F 138 (410)
T ss_dssp E
T ss_pred E
Confidence 6
No 205
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=98.32 E-value=6.3e-07 Score=91.70 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=61.4
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEECCC---CceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~---~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+....++|...+.||+|+||.||+|+..+. ..+..||||.++.... ...+.|.+|+.++++++|||||+++|+|
T Consensus 40 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 119 (343)
T 1luf_A 40 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC 119 (343)
T ss_dssp HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred ceeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 34455677889999999999999999998642 2446899999975432 2345799999999999999999999987
No 206
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=98.32 E-value=5.9e-07 Score=90.84 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=52.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+.... +..||||++........+.+.+|+.++++++|||||++++++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 77 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDC--DKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEIL 77 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTT--TEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred CCceeEEEEeccCCCeEEEEEEECCC--CeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEec
Confidence 35677889999999999999997654 348999999765544456799999999999999999999875
No 207
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=98.31 E-value=3.9e-07 Score=99.07 Aligned_cols=73 Identities=26% Similarity=0.482 Sum_probs=60.7
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEeC
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSCA 715 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~~ 715 (715)
+.|+...++|...+.||+|+||.||+|++.++ . .||||+++.... ..++|.+|+.+|++++|||||+++|+|.
T Consensus 260 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~--~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~ 332 (535)
T 2h8h_A 260 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-T--RVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 332 (535)
T ss_dssp TCSBCCGGGEEEEEEEEECSSEEEEEEEETTT-E--EEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cceecchhhhhhheecccCCCeEEEEEEECCC-c--eEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEe
Confidence 44555667788889999999999999998754 3 699999976542 3568999999999999999999999873
No 208
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=98.31 E-value=5.5e-07 Score=92.23 Aligned_cols=73 Identities=21% Similarity=0.435 Sum_probs=59.5
Q ss_pred HHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc-----CCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ-----HRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 640 ~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~-----~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+....++|...+.||+|+||.||+|+....+ ..||+|++... .....+.+.+|+.++++++|||||++++++
T Consensus 20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~ 97 (345)
T 3hko_A 20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTR--AIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVY 97 (345)
T ss_dssp CHHHHHHHEEEEEEEEECSSCEEEEEEETTTC--CEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhhhhhhheeecceeeecCCeEEEEEEECCCC--ceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhh
Confidence 34556778999999999999999999976543 48999999643 233456799999999999999999999986
No 209
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=98.31 E-value=6.2e-07 Score=88.19 Aligned_cols=66 Identities=23% Similarity=0.432 Sum_probs=55.9
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+..++ . .||+|++.... ...+++.+|+.++++++|||||++++++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~-~--~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 74 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNK-D--KVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVC 74 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTT-E--EEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred hhhceeeheecCCCccEEEEEEecCC-C--eEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 45677889999999999999998654 2 79999997543 2356799999999999999999999986
No 210
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=98.31 E-value=5.1e-07 Score=89.84 Aligned_cols=70 Identities=29% Similarity=0.533 Sum_probs=57.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCc-----eeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDH-----ETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~-----~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+. +..||+|.+........+.+.+|+.++++++|||||+++|++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 81 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVC 81 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEE
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEE
Confidence 3567778999999999999999754321 246999999766555567899999999999999999999987
No 211
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=98.30 E-value=8e-07 Score=89.07 Aligned_cols=68 Identities=22% Similarity=0.454 Sum_probs=56.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+...++ ..||+|.+........+.+.+|+.++++++|||||+++|++
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~--~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 85 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETG--ALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAY 85 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTC--CEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCC--cEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeee
Confidence 456788899999999999999986543 48999999766555567899999999999999999999986
No 212
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=98.30 E-value=5.6e-07 Score=89.27 Aligned_cols=72 Identities=19% Similarity=0.371 Sum_probs=56.6
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++....+|...+.||+|+||.||+|+..++ ..||||++..... ..+++.+|+.++.+++|||||++++++
T Consensus 17 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~ 88 (283)
T 3gen_A 17 GSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQ---YDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVC 88 (283)
T ss_dssp CTTBCCGGGEEEEEECC---CEEEEEEEETTT---EEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred CCccCCHHHHHhHhhcCCCCCceEEEEEEcCC---CeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEE
Confidence 34455566788889999999999999998654 3799999975432 356799999999999999999999987
No 213
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=98.30 E-value=5.5e-07 Score=91.24 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=55.9
Q ss_pred hcCCccccccCcCCCceEEEEEECCC-CceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~-~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+.... ..+..||||.++.... ...+.|.+|+.++++++|||||++++++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 119 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVV 119 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 34567778999999999999998532 2334699999975432 2345799999999999999999999987
No 214
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=98.29 E-value=3.8e-07 Score=92.39 Aligned_cols=66 Identities=26% Similarity=0.365 Sum_probs=54.0
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...+|...+.||+|+||.||+|+..+ ..||||++.... .....+.+|+.++++++|||||+++|++
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~----~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~ 87 (322)
T 3soc_A 22 QSMPLQLLEVKARGRFGCVWKAQLLN----EYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAE 87 (322)
T ss_dssp TTEEEEEEEEEECSTTCEEEEEEETT----EEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEE
T ss_pred chhhchhhheecccCceEEEEEEECC----CEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhccee
Confidence 35678888999999999999999753 389999996442 2234567799999999999999999986
No 215
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=98.29 E-value=1.1e-06 Score=87.16 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=55.8
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc---chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG---ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~---~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+.|...+.||+|+||.||+|+.... +..||||.+...... ..+.|.+|+.++++++|||||++++++
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~ 100 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTAL--DRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVV 100 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTT--TEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCC--CceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEE
Confidence 5688889999999999999997654 348999999754322 235799999999999999999999985
No 216
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=98.28 E-value=6.7e-07 Score=89.09 Aligned_cols=71 Identities=25% Similarity=0.483 Sum_probs=55.4
Q ss_pred hhcCCcccc-ccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLEN-LIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~-~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
....|...+ .||+|+||.||+|.+.....+..||||.++.... ...+++.+|+.++++++||||++++|++
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 87 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC 87 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 345566666 8999999999999775555567899999975432 2246799999999999999999999986
No 217
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=98.28 E-value=9.4e-07 Score=97.57 Aligned_cols=62 Identities=27% Similarity=0.548 Sum_probs=52.9
Q ss_pred ccCcCCCceEEEEEECCCCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 653 LIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 653 ~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.||+|+||.||+|.+...+.+..||||+++... ....++|.+|+.+|++++|||||+++|+|
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~ 405 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC 405 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEe
Confidence 799999999999998654455689999997543 33457899999999999999999999987
No 218
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=98.28 E-value=6.6e-07 Score=89.90 Aligned_cols=63 Identities=30% Similarity=0.566 Sum_probs=53.5
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|++.+. .||||.+... ...+.|.+|+.++++++|||||+++|+|
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~~~----~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 70 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWRAK----DVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGAC 70 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEETTE----EEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBC
T ss_pred hHeeeeeEeecCCCceEEEEEECCe----eEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEE
Confidence 4577788999999999999997533 7999999633 3346799999999999999999999986
No 219
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=98.28 E-value=1e-06 Score=89.41 Aligned_cols=70 Identities=29% Similarity=0.436 Sum_probs=57.6
Q ss_pred hcCCccccccCcCCCceEEEEEECC--CCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNH--DDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~--~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|++.. ...+..||||++........+.+.+|+.++++++|||||+++|++
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 111 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVC 111 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEE
Confidence 4557778899999999999999631 224568999999765555556899999999999999999999986
No 220
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=98.28 E-value=9.8e-07 Score=91.12 Aligned_cols=70 Identities=21% Similarity=0.457 Sum_probs=56.7
Q ss_pred hcCCccccccCcCCCceEEEEEECC-----CCceeEEEEEEeeccCC-cchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNH-----DDHETLVAVKVLNLQHR-GASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~-----~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+..+ ...+..||||+++.... ...+++.+|+.++.++ +|||||+++|+|
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~ 156 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC 156 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEE
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence 4677888999999999999999642 12456799999975432 2345799999999999 899999999987
No 221
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=98.28 E-value=9.4e-07 Score=90.71 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=56.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc------chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG------ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~------~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|+...++ ..||||.++..... ..+.+.+|+.++.+++|||||++++++
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~--~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~ 84 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTG--LEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVY 84 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCC--CEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEE
Confidence 456888899999999999999976543 48999999754321 246799999999999999999999986
No 222
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=98.27 E-value=6.1e-07 Score=90.65 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=56.0
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+++....+ ..||||++........+.+.+|+.++++++|||||++++++
T Consensus 27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 95 (317)
T 2buj_A 27 DNKHYLFIQKLGEGGFSYVDLVEGLHDG--HFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYC 95 (317)
T ss_dssp TTEEEEEEEEEEC--CEEEEEEEETTTC--CEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEE
T ss_pred CCeEEEEEEEecCCCCeEEEEEEecCCC--cEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 3567888899999999999999975443 48999999765444456799999999999999999999986
No 223
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=98.27 E-value=8.9e-07 Score=98.03 Aligned_cols=63 Identities=25% Similarity=0.501 Sum_probs=53.1
Q ss_pred cccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 652 NLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 652 ~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+.||+|+||.||+|.+.....+..||||+++.... ...++|.+|+.+|.+++|||||+++|+|
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~ 439 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC 439 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 47999999999999876655567899999975432 2346899999999999999999999987
No 224
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=98.26 E-value=9.2e-07 Score=89.42 Aligned_cols=67 Identities=24% Similarity=0.422 Sum_probs=55.8
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+.|...+.||+|+||.||+|+....+ ..||||++.... ....+.+.+|+.++++++|||||++++++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 76 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTG--DLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIE 76 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCC--cEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEe
Confidence 46778899999999999999986543 489999997543 23356788999999999999999999975
No 225
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=98.26 E-value=1.3e-06 Score=89.89 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=56.4
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+++...++ ..||||.+..... ..+.+.+|+.++++++|||||++++++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~ 85 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTK--ELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVI 85 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTC--CEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCC--cEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 467888899999999999999976543 4899999975432 246789999999999999999999986
No 226
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=98.25 E-value=1e-06 Score=88.67 Aligned_cols=68 Identities=24% Similarity=0.460 Sum_probs=54.7
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+..++ ..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 88 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDSQG---RIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI 88 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEETTS---CEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hHhhhHhhhhccCCCCeEEEEEEECCC---CEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEE
Confidence 356788889999999999999997543 3899999964432 2245789999999999999999999986
No 227
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=98.25 E-value=1.2e-06 Score=88.86 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=55.4
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc------chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG------ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~------~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..|...+.||+|+||.||+|+...++ ..||||.+...... ..+.+.+|+.++.+++|||||++++++
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~--~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 83 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTG--LQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVY 83 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTC--CEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCC--cEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 45778899999999999999976543 48999999754321 246799999999999999999999986
No 228
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=98.25 E-value=8.2e-07 Score=94.79 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=48.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...+ +..||||++..... ...+.+.+|+.++.+++|||||++++++
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~ 121 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLE--KRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIV 121 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC----CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCC--CcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 35788889999999999999997544 34899999964322 2345789999999999999999999986
No 229
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=98.25 E-value=8.9e-07 Score=91.78 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=56.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+...++ ..||+|.+..........+.+|+.++.+++|||||++++++
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~--~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~ 117 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATG--RVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF 117 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCC--CEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEE
Confidence 356888899999999999999976543 48999999755433445789999999999999999999986
No 230
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=98.25 E-value=7.7e-07 Score=92.51 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=52.7
Q ss_pred HHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 641 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++....+|...+.||+|+||.||+|+...+ +..||||++..... ...+|+.+++.++|||||++++++
T Consensus 2 l~~~~~~y~~~~~lG~G~fg~V~~a~~~~~--~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~ 69 (383)
T 3eb0_A 2 LETSSKKYSLGKTLGTGSFGIVCEVFDIES--GKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYF 69 (383)
T ss_dssp ----CTTEEEEEEEECC-CEEEEEEEETTT--CCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEE
T ss_pred CccccceEEEEEEEEeccCEEEEEEEECCC--CCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhhee
Confidence 345567889999999999999999997554 34899999965432 234799999999999999999986
No 231
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=98.25 E-value=6e-07 Score=89.25 Aligned_cols=68 Identities=25% Similarity=0.514 Sum_probs=52.9
Q ss_pred CCcccc-ccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 647 GFSLEN-LIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 647 ~f~~~~-~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+|.... .||+|+||.||+|++...+.+..||||.++.... ...+.+.+|+.++++++|||||+++|++
T Consensus 10 ~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 79 (287)
T 1u59_A 10 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC 79 (287)
T ss_dssp GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred HhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe
Confidence 344444 8999999999999976444456899999975432 3346799999999999999999999986
No 232
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=98.24 E-value=8.1e-07 Score=89.90 Aligned_cols=68 Identities=19% Similarity=0.377 Sum_probs=54.1
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||.+..... ...+.+.+|+.+++.++|||||++++++
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~ 74 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTE--EAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCC--cEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 457888899999999999999976543 4899999964432 2235689999999999999999999986
No 233
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=98.24 E-value=7.4e-07 Score=87.55 Aligned_cols=67 Identities=27% Similarity=0.433 Sum_probs=56.5
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+..++ . .||||.+..... ..+++.+|+.++.+++|||||++++++
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~-~--~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~ 72 (268)
T 3sxs_A 6 KREEITLLKELGSGQFGVVKLGKWKGQ-Y--DVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVC 72 (268)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTT-E--EEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred chhheeeeeeeccCCCceEEEEEecCc-e--eEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 346778889999999999999998654 2 699999975432 356799999999999999999999987
No 234
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=98.24 E-value=9e-07 Score=91.31 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=63.0
Q ss_pred cchHHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc-----------chHHHHHHHHHHhcCC
Q 046340 635 RVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG-----------ASKSFMAQCQALRSVR 703 (715)
Q Consensus 635 ~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~-----------~~~~~~~e~~~l~~~~ 703 (715)
+...+++....++|...+.||+|+||.||+|+... +..||||++...... ..+.+.+|+.++.+++
T Consensus 11 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 87 (362)
T 3pg1_A 11 RDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSE---GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFH 87 (362)
T ss_dssp HHHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTT---SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccceEEeEEeccCCCEEEEEEECCC---CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCC
Confidence 34567788889999999999999999999998644 348999999543211 1267899999999999
Q ss_pred CCCcceEEEEe
Q 046340 704 HRNLVKIITSC 714 (715)
Q Consensus 704 h~niv~l~g~~ 714 (715)
|||||++++++
T Consensus 88 h~~iv~~~~~~ 98 (362)
T 3pg1_A 88 HPNILGLRDIF 98 (362)
T ss_dssp CTTBCCCSEEE
T ss_pred CcCccceeeeE
Confidence 99999999886
No 235
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=98.24 E-value=9.2e-07 Score=89.78 Aligned_cols=69 Identities=26% Similarity=0.332 Sum_probs=56.8
Q ss_pred cCCccccccCcCCCceEEEEEEC--CCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILN--HDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~--~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+|...+.||+|+||.||+|++. +...+..||||++........+.+.+|+.++++++|||||++++++
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 93 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVS 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEE
Confidence 46777889999999999999963 2224568999999765444456799999999999999999999976
No 236
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=98.24 E-value=1.1e-06 Score=89.75 Aligned_cols=67 Identities=25% Similarity=0.352 Sum_probs=54.8
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc---chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG---ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~---~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..|...+.||+|+||.||+|+...+ +..||||++...... ..+++.+|+.++++++|||||+++|++
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~ 123 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRN--SEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCY 123 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccC--CeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 4477788999999999999996544 348999999754332 235689999999999999999999986
No 237
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=98.24 E-value=8.6e-07 Score=87.77 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=57.7
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCC-CceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~-~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+...++|...+.||+|+||.||+|+...+ ..+..||+|....... ...+.|.+|+.++++++|||||+++|++
T Consensus 11 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 85 (281)
T 1mp8_A 11 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI 85 (281)
T ss_dssp BCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred EEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE
Confidence 34456788889999999999999997543 2345799999875432 2345789999999999999999999986
No 238
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=98.24 E-value=7.9e-07 Score=87.93 Aligned_cols=71 Identities=28% Similarity=0.487 Sum_probs=58.7
Q ss_pred HHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 640 ~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+++...++|...+.||+|+||.||+|+..++ ..||||.+.... ...+.+.+|+.++.+++||||++++|++
T Consensus 7 ~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 77 (279)
T 1qpc_A 7 EWEVPRETLKLVERLGAGQFGEVWMGYYNGH---TKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVV 77 (279)
T ss_dssp TTBCCGGGEEEEEEEEEETTEEEEEEEETTT---EEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hcccCHHhhhheeeecCCCCeEEEEEEEcCC---cEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEE
Confidence 3445566788889999999999999997644 379999997543 2356799999999999999999999986
No 239
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=98.24 E-value=1.2e-06 Score=90.60 Aligned_cols=68 Identities=29% Similarity=0.407 Sum_probs=56.6
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+++...++ ..||+|.+.... ....+.+.+|+.++.+++|||||++++++
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~--~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~ 84 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTK--KMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSF 84 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTC--CEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCC--CEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 456888899999999999999976653 489999996432 33456789999999999999999999886
No 240
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=98.23 E-value=1.5e-06 Score=85.61 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=46.6
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...+ +..||+|.+.... ....+.+.+|+.++++++|||||++++++
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 82 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTT--GQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVI 82 (275)
T ss_dssp CCCBCCCC---------EEEEECTTT--CCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCC--CCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEE
Confidence 45788889999999999999996544 3489999996532 22345789999999999999999999986
No 241
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=3.2e-07 Score=81.71 Aligned_cols=82 Identities=10% Similarity=0.094 Sum_probs=34.7
Q ss_pred CcEEecCCCcCcccCCccccCCCCCCEEEccCCc-CccCccccccCC----CCCCEEEeeccc-cccccCccccCCCCCC
Q 046340 66 LQILALHNNTFGGQIPDNISHCVNLESLGLGVNE-LVGKVPGKLGSL----SKLWILSVHYNS-LSGEIPSSFGNLSSLE 139 (715)
Q Consensus 66 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 139 (715)
|+.||+++|.++......+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. ++...-..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 4444444444433333334444444444444442 332222233332 245555555543 4433333344455555
Q ss_pred EEEcccCc
Q 046340 140 FLSAAANQ 147 (715)
Q Consensus 140 ~L~l~~n~ 147 (715)
+|++++|.
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 55555543
No 242
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=98.23 E-value=8.9e-07 Score=89.87 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=56.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||.+.... ......+.+|+.+++.++|||||++++++
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~ 78 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQ--QKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVI 78 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCC--CEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 467888899999999999999976543 489999996431 22245789999999999999999999986
No 243
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=98.23 E-value=1.2e-06 Score=89.09 Aligned_cols=68 Identities=21% Similarity=0.324 Sum_probs=56.6
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc---CCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ---HRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~---~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...+ +..||+|.++.. .....+.+.+|+.++++++|||||++++++
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~ 74 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKAT--GRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAF 74 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTT--CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCC--CCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEE
Confidence 45788889999999999999997654 348999999743 233456789999999999999999999875
No 244
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=98.23 E-value=1.5e-06 Score=86.13 Aligned_cols=67 Identities=24% Similarity=0.351 Sum_probs=56.2
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+.|...+.||+|+||.||+++...++ ..||+|.+.... ....+.+.+|+.++++++|||||++++++
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~--~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 89 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSG--LERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVF 89 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTC--CEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred hheeecceeccCCCeEEEEEEEccCC--ceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHhe
Confidence 46778899999999999999976543 489999997543 23457899999999999999999999986
No 245
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=98.23 E-value=1.1e-06 Score=88.94 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=55.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||+|.+.... .....+.+|+.++..++|||||++++++
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~--~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~ 70 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSK--KTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESF 70 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCC--cEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEE
Confidence 457888899999999999999976543 489999996432 3345688999999999999999999986
No 246
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=98.23 E-value=9.6e-07 Score=87.44 Aligned_cols=71 Identities=27% Similarity=0.519 Sum_probs=57.7
Q ss_pred hhcCCccccccCcCCCceEEEEEECCC-CceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~-~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+..+. ..+..||||.+..... ...+.|.+|+.++++++||||++++|++
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 82 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGII 82 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEE
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence 456788889999999999999997543 3445799999975432 3346799999999999999999999986
No 247
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=98.22 E-value=6.2e-07 Score=93.61 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=62.4
Q ss_pred chHHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEE
Q 046340 636 VSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIIT 712 (715)
Q Consensus 636 ~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g 712 (715)
+..++++...++|...+.||+|+||.||+++...++ ..||||++.... ....+.+.+|+.++.+++|||||++++
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~--~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~ 128 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTG--QVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHF 128 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTC--CEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCC--CEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEE
Confidence 455666777889999999999999999999986543 489999996432 122345889999999999999999998
Q ss_pred Ee
Q 046340 713 SC 714 (715)
Q Consensus 713 ~~ 714 (715)
++
T Consensus 129 ~~ 130 (412)
T 2vd5_A 129 AF 130 (412)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 248
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=98.22 E-value=6.2e-07 Score=88.24 Aligned_cols=66 Identities=23% Similarity=0.469 Sum_probs=54.9
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+..+. .||||.+..... ...+.|.+|+.++++++|||||+++|+|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~----~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 76 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQGN----DIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEETTE----EEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEECCe----eEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEE
Confidence 35677889999999999999997532 799999975432 2345799999999999999999999987
No 249
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=98.22 E-value=9e-07 Score=90.63 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=50.0
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+.|...+.||+|+||.||+|+...++ ..||||.++... ..+.+.+|+.++.+++|||||++++++
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~--~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~ 117 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQ--KPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIF 117 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEC------------CHHHHHCCCTTBCCEEEEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCC--cEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeE
Confidence 3566888899999999999999986553 389999997542 235688999999999999999999986
No 250
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=98.22 E-value=7.8e-07 Score=90.08 Aligned_cols=80 Identities=23% Similarity=0.408 Sum_probs=63.9
Q ss_pred cchHHHHHHhhcCCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceE
Q 046340 635 RVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKI 710 (715)
Q Consensus 635 ~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l 710 (715)
.+..++++...++|...+.||+|+||.||+|+..+ ...+..||||.+..... .....|.+|+.++++++||||+++
T Consensus 14 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 93 (322)
T 1p4o_A 14 VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRL 93 (322)
T ss_dssp CCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCE
T ss_pred ccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeee
Confidence 34556677778889999999999999999998652 12345899999975432 233568999999999999999999
Q ss_pred EEEe
Q 046340 711 ITSC 714 (715)
Q Consensus 711 ~g~~ 714 (715)
+|++
T Consensus 94 ~~~~ 97 (322)
T 1p4o_A 94 LGVV 97 (322)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 251
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=98.22 E-value=4.7e-07 Score=91.77 Aligned_cols=75 Identities=24% Similarity=0.488 Sum_probs=53.2
Q ss_pred HHHHhhcCCccccccCcCCCceEEEEEECCCC-ceeEEEEEEeecc--CCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDD-HETLVAVKVLNLQ--HRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 640 ~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~-~~~~~avk~l~~~--~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++....++|...+.||+|+||.||+|+....+ ....||||.++.. .....+.|.+|+.++++++|||||+++|++
T Consensus 17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 94 (323)
T 3qup_A 17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVS 94 (323)
T ss_dssp TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEE
T ss_pred hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhcee
Confidence 34445678888999999999999999965432 1136999999754 233456799999999999999999999975
No 252
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=98.22 E-value=7.4e-07 Score=91.36 Aligned_cols=67 Identities=19% Similarity=0.388 Sum_probs=55.2
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC-----CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-----RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-----~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+.|...+.||+|+||.||+|+...++ ..||||.+.... ....+.+.+|+.++++++|||||++++++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~ 95 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETG--QQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETY 95 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCC--CEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 45788899999999999999976543 489999996321 12356799999999999999999999986
No 253
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=1.2e-06 Score=84.51 Aligned_cols=105 Identities=23% Similarity=0.140 Sum_probs=70.5
Q ss_pred ccCCCCCCE--EeCCCCCCCcc---CChhhcCCCCCcEEecCCCcCccc--CCccccCCCCCCEEEccCCcCccCccccc
Q 046340 36 IGNLSFLRV--LDLKNNSFRDE---IPQEIGYLFRLQILALHNNTFGGQ--IPDNISHCVNLESLGLGVNELVGKVPGKL 108 (715)
Q Consensus 36 ~~~l~~L~~--L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 108 (715)
|...+.|+. ++++.|..... ..-...++++|+.|+|++|++++. ++..+..+++|+.|+|++|++.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 455555555 66777753321 111224578888888888888863 345667888888888888888765 233
Q ss_pred cCCC--CCCEEEeeccccccccC-------ccccCCCCCCEEE
Q 046340 109 GSLS--KLWILSVHYNSLSGEIP-------SSFGNLSSLEFLS 142 (715)
Q Consensus 109 ~~l~--~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~ 142 (715)
..+. +|+.|+|++|.+++..| ..+..+++|+.|+
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3333 88889999888876444 2367788888886
No 254
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=98.21 E-value=1.3e-06 Score=91.14 Aligned_cols=67 Identities=24% Similarity=0.422 Sum_probs=55.7
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..|...+.||+|+||.||+|+....+ ..||||++.... ....+.+.+|++++++++|||||++++++
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~ 76 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTG--DLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIE 76 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCC--cEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEee
Confidence 46778899999999999999986543 489999997543 23346788999999999999999999975
No 255
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=98.21 E-value=1.3e-06 Score=87.71 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=53.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ ..||+|.+........+.+.+|+.++.+++||||+++++++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 75 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTG--KLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIY 75 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCC--CEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhc
Confidence 346778899999999999999976443 48999999865444456789999999999999999999976
No 256
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=98.21 E-value=1.7e-06 Score=86.99 Aligned_cols=67 Identities=24% Similarity=0.397 Sum_probs=55.0
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc--chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG--ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~--~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|+...++ ..||||++...... ..+.+.+|+.++.+++|||||++++++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 71 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTG--QIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVF 71 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCC--cEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhhee
Confidence 56788899999999999999976543 48999998654322 235688999999999999999999986
No 257
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=98.20 E-value=1.4e-06 Score=88.78 Aligned_cols=76 Identities=21% Similarity=0.394 Sum_probs=60.6
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEECCCC---ceeEEEEEEeeccCC-cchHHHHHHHHHHhcC-CCCCcceEEEE
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILNHDD---HETLVAVKVLNLQHR-GASKSFMAQCQALRSV-RHRNLVKIITS 713 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~---~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~-~h~niv~l~g~ 713 (715)
++++...++|...+.||+|+||.||+|+....+ .+..||+|.+..... ...+.+.+|+.++.++ +|||||+++|+
T Consensus 39 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~ 118 (333)
T 2i1m_A 39 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA 118 (333)
T ss_dssp GGGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred ccccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence 345666778889999999999999999975431 224799999975432 2345789999999999 89999999998
Q ss_pred e
Q 046340 714 C 714 (715)
Q Consensus 714 ~ 714 (715)
|
T Consensus 119 ~ 119 (333)
T 2i1m_A 119 C 119 (333)
T ss_dssp E
T ss_pred E
Confidence 7
No 258
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.20 E-value=1.4e-06 Score=91.40 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=46.8
Q ss_pred ccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 651 ENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 651 ~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.||+|+||.||+|+..++..+..||||++.... ....+.+|+.++++++|||||++++++
T Consensus 26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~ 87 (405)
T 3rgf_A 26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVF 87 (405)
T ss_dssp SCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEE
T ss_pred CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEE
Confidence 45799999999999998754445689999996442 235789999999999999999999986
No 259
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=98.20 E-value=1.2e-06 Score=86.58 Aligned_cols=69 Identities=23% Similarity=0.446 Sum_probs=57.0
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+.++|...+.||+|+||.||+|+...++. .||||.+.... ......+.+|+.++++++|||||++++++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 78 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKF--ILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF 78 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCc--EEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheE
Confidence 45678888999999999999999766544 89999996432 12245789999999999999999999986
No 260
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=98.20 E-value=1.3e-06 Score=89.88 Aligned_cols=68 Identities=19% Similarity=0.376 Sum_probs=56.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||.+..... ...+.+.+|+.++++++|||||++++++
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~ 97 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTG--LEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSI 97 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 456888899999999999999976543 4899999975432 2235688999999999999999999986
No 261
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=98.19 E-value=1.8e-06 Score=86.56 Aligned_cols=68 Identities=24% Similarity=0.426 Sum_probs=56.1
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC----CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH----RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~----~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|..... +..||||.+.... ....+.+.+|+.++++++|||||++++++
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 75 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSET--LCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVL 75 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTT--CCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCC--CcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEE
Confidence 46788899999999999999996544 3489999996432 23356799999999999999999999986
No 262
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=98.19 E-value=1.2e-06 Score=86.13 Aligned_cols=66 Identities=24% Similarity=0.446 Sum_probs=52.4
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC----cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR----GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~----~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+..+ ..||||.+..... ...+.+.+|++++++++|||||+++|+|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 75 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWIG----DEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVC 75 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEETT----EEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEcC----CeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence 4577888999999999999999753 2799999864322 2246789999999999999999999987
No 263
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=98.19 E-value=2.1e-06 Score=88.12 Aligned_cols=68 Identities=25% Similarity=0.473 Sum_probs=56.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||++..... .....+.+|+.++++++|||||++++++
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 85 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTG--QKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEIC 85 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTC--CEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCC--CEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhhee
Confidence 457888899999999999999976543 4899999864432 2345788999999999999999999976
No 264
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=98.19 E-value=9.3e-07 Score=89.68 Aligned_cols=70 Identities=26% Similarity=0.504 Sum_probs=52.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCc--eeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~--~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+...++. ...||+|.+.... ....+.|.+|+.++++++|||||+++|+|
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 86 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGIC 86 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEE
Confidence 3567888999999999999999754322 2346899886432 34457899999999999999999999987
No 265
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=98.19 E-value=1.2e-06 Score=88.97 Aligned_cols=71 Identities=25% Similarity=0.513 Sum_probs=54.7
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
....++|...+.||+|+||.||+|+.... +..||||+++.... ...+.+.+|+.++++++|||||++++++
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 102 (329)
T 3gbz_A 30 ATSIDRYRRITKLGEGTYGEVYKAIDTVT--NETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVI 102 (329)
T ss_dssp --CGGGEEEEEEEEECSSSEEEEEEETTT--TEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEE
T ss_pred ccchhhEEEEEEEEecCCeEEEEEEECCC--CceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEE
Confidence 44567889999999999999999986554 34899999965432 2235678999999999999999999986
No 266
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=98.19 E-value=1.4e-06 Score=87.74 Aligned_cols=74 Identities=26% Similarity=0.449 Sum_probs=59.1
Q ss_pred HHHhhcCCccccccCcCCCceEEEEEEC---CCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 641 LIKATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 641 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~---~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
++...++|...+.||+|+||.||+|+.. +...+..||||.+..... ...+.+.+|+.++.++ +|||||+++|+|
T Consensus 18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~ 96 (313)
T 1t46_A 18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGAC 96 (313)
T ss_dssp GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEE
Confidence 3444567888899999999999999862 223556899999975433 2346789999999999 999999999987
No 267
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=98.19 E-value=1.2e-06 Score=93.38 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=56.1
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC--CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH--RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~--~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+.... +..||||++.... ....+.+.+|+.++++++|||||++++++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~--~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~ 130 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVL--DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVF 130 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTT--TEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEE
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCC--CCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 46788889999999999999996554 3489999997532 22345788999999999999999999986
No 268
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=98.18 E-value=1.2e-06 Score=92.10 Aligned_cols=69 Identities=16% Similarity=0.301 Sum_probs=55.2
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--------cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--------GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--------~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+...++ ..||||++..... .....+.+|+.++++++|||||++++++
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~ 209 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTC--KKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF 209 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTC--CEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEE
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCC--cEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 3567888899999999999999976553 4899999964321 1122488999999999999999999985
No 269
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=4.9e-07 Score=80.49 Aligned_cols=84 Identities=10% Similarity=-0.008 Sum_probs=64.7
Q ss_pred CCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCc-CcccCCccccCC----CCCCEEEccCCc-CccCccccccCCCC
Q 046340 40 SFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNT-FGGQIPDNISHC----VNLESLGLGVNE-LVGKVPGKLGSLSK 113 (715)
Q Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 113 (715)
-.|++|||++|.|++.--..+.++++|++|+|++|. +++.....+..+ ++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888887666667888888888888884 666555566664 468899998884 77665566778888
Q ss_pred CCEEEeeccc
Q 046340 114 LWILSVHYNS 123 (715)
Q Consensus 114 L~~L~Ls~n~ 123 (715)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999998875
No 270
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=98.18 E-value=1.5e-06 Score=87.60 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=63.0
Q ss_pred chHHHHHHhhcCCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccCC-cchHHHHHHHHHHhcC-CCCCcceE
Q 046340 636 VSYQNLIKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQHR-GASKSFMAQCQALRSV-RHRNLVKI 710 (715)
Q Consensus 636 ~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~-~h~niv~l 710 (715)
+...+++...++|...+.||+|+||.||+|+..+ ...+..||||.+..... ...+.+.+|+.++.++ +|||||++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 4455666677889999999999999999998632 23556899999975432 2235789999999999 79999999
Q ss_pred EEEe
Q 046340 711 ITSC 714 (715)
Q Consensus 711 ~g~~ 714 (715)
+|+|
T Consensus 97 ~~~~ 100 (316)
T 2xir_A 97 LGAC 100 (316)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 271
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=98.18 E-value=1.4e-06 Score=86.49 Aligned_cols=66 Identities=26% Similarity=0.462 Sum_probs=54.2
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|+...+ ..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~---~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 69 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYG---ETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTS---CEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCC---CEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEE
Confidence 4677789999999999999997433 3899999964432 2246789999999999999999999986
No 272
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=98.18 E-value=2.2e-06 Score=85.80 Aligned_cols=69 Identities=26% Similarity=0.318 Sum_probs=54.2
Q ss_pred cCCccccccCcCCCceEEEEEEC--CCCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILN--HDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~--~~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..|...+.||+|+||.||+|++. +...+..||||++.... ....+.+.+|+.++++++|||||++++++
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 92 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGIC 92 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEE
Confidence 34677789999999999999963 22245689999997443 33456799999999999999999999986
No 273
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=98.18 E-value=2.1e-06 Score=85.05 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=55.2
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC------cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR------GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~------~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|+....+ ..||||.+..... ...+.+.+|+.++++++||||+++++++
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~--~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 77 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTG--KEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIF 77 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCC--CeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhhee
Confidence 45778899999999999999976543 4899999975421 1246799999999999999999999986
No 274
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=98.17 E-value=2.2e-06 Score=85.42 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=55.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc---chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG---ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~---~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+....+ ..||+|.+...... ..+.|.+|+.++.+++|||||++++++
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~ 80 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILN--IKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVD 80 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTC--SEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCC--CeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEee
Confidence 346788899999999999999965543 48999999644322 235789999999999999999999986
No 275
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=98.17 E-value=1.5e-06 Score=87.52 Aligned_cols=73 Identities=26% Similarity=0.438 Sum_probs=57.8
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.....+|...+.||+|+||.||+|+... ...+..||||.+..... ...+.+.+|+.++++++|||||+++|++
T Consensus 19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 95 (314)
T 2ivs_A 19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGAC 95 (314)
T ss_dssp BCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred ccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEE
Confidence 3445678888999999999999998632 22345899999975432 2346789999999999999999999986
No 276
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=98.17 E-value=7.9e-07 Score=90.64 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=58.8
Q ss_pred HHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCC-CCCcceEEEEe
Q 046340 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVR-HRNLVKIITSC 714 (715)
Q Consensus 641 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~-h~niv~l~g~~ 714 (715)
++....+|...+.||+|+||.||+|+....+ ..||||++........+.+.+|+.++.++. |||||++++++
T Consensus 23 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~ 95 (337)
T 3ll6_A 23 VELGELRLRVRRVLAEGGFAFVYEAQDVGSG--REYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAA 95 (337)
T ss_dssp EEETTEEEEEEEEEECCSSEEEEEEEETTTC--CEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred eeccCceEEEEEEEccCCceEEEEEEECCCC--cEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccc
Confidence 3444567888899999999999999976543 489999996554444567899999999996 99999999986
No 277
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=98.17 E-value=2.4e-06 Score=84.45 Aligned_cols=68 Identities=21% Similarity=0.375 Sum_probs=56.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||+|.+..... ...+.+.+|+.++++++|||||+++|++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 74 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDG--KILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRI 74 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTC--CEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCC--cEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEE
Confidence 457888899999999999999976543 4899999975432 2235689999999999999999999976
No 278
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=98.17 E-value=3.5e-06 Score=84.96 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=54.1
Q ss_pred cCCcc-ccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 646 DGFSL-ENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~-~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
..|.. .+.||+|+||.||+|+.... +..||||++........+.+.+|+.++.++ +|||||++++++
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~ 80 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLIT--SQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFF 80 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSS--CCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCC--CcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence 34555 47799999999999996543 348999999766555567899999999985 799999999986
No 279
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=98.17 E-value=1.9e-06 Score=86.80 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=56.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc---CCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ---HRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~---~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+++...+ +..||+|.++.. .....+.+.+|+.+++.++|||||++++++
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~ 75 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHN--GRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTF 75 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTT--CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCC--CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEE
Confidence 45788889999999999999997654 348999999743 223456788999999999999999999975
No 280
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=98.17 E-value=1e-06 Score=88.79 Aligned_cols=76 Identities=25% Similarity=0.570 Sum_probs=56.9
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEECC-CCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+++....++|...+.||+|+||.||+|+... ..++..||||.+..... ...+.+.+|+.++++++|||||+++|++
T Consensus 27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 105 (313)
T 3brb_A 27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVC 105 (313)
T ss_dssp TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEE
T ss_pred HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEE
Confidence 3444455677788899999999999998754 23456899999975432 2345789999999999999999999986
No 281
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=98.16 E-value=1.4e-06 Score=91.70 Aligned_cols=63 Identities=30% Similarity=0.424 Sum_probs=51.7
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..|...+.||+|+||.||+|+....+ ..||||++..... .+.+|+.++++++|||||++++++
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~--~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~ 116 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSG--ELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFF 116 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCC--cEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEE
Confidence 35777889999999999999986543 4899999964422 245799999999999999999876
No 282
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=98.16 E-value=2.6e-06 Score=86.59 Aligned_cols=68 Identities=28% Similarity=0.466 Sum_probs=55.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcc--hHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGA--SKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~--~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ ..||||++....... .+.+.+|+.++.+++|||||+++++|
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 93 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTG--RIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVC 93 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTC--CEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCC--ceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEe
Confidence 456788899999999999999976543 489999996543322 34578999999999999999999986
No 283
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=98.16 E-value=1.5e-06 Score=87.44 Aligned_cols=68 Identities=24% Similarity=0.298 Sum_probs=55.6
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcc---hHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGA---SKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~---~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+.... +..||||++....... ...|.+|+.++++++|||||++++++
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 81 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRD--HRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTG 81 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCC--CceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEee
Confidence 45688889999999999999997544 3489999997543222 34688999999999999999999875
No 284
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=98.16 E-value=2.3e-06 Score=84.85 Aligned_cols=68 Identities=19% Similarity=0.376 Sum_probs=56.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ ..||+|.+..... ...+.+.+|+.++++++||||+++++++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 74 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTG--LEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSI 74 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCC--ceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEE
Confidence 467888899999999999999976543 4899999975432 2235688999999999999999999986
No 285
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=98.16 E-value=1.7e-06 Score=87.80 Aligned_cols=72 Identities=26% Similarity=0.411 Sum_probs=54.0
Q ss_pred HhhcCCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 643 KATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 643 ~~~~~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
....+|...+.||+|+||.||+|++.+ ...+..||||.+.... .....++.+|+.++++++|||||+++|++
T Consensus 27 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 102 (327)
T 2yfx_A 27 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVS 102 (327)
T ss_dssp CCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEE
Confidence 345678888999999999999999542 2234589999996432 23345789999999999999999999986
No 286
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=98.16 E-value=2.1e-06 Score=88.09 Aligned_cols=68 Identities=21% Similarity=0.405 Sum_probs=56.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+.... +..||||.+..... .....+.+|+.++++++|||||+++|++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 78 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPT--GEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQ 78 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEC
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCC--CcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeee
Confidence 46788889999999999999997654 34899999964432 2235688999999999999999999975
No 287
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=98.16 E-value=1.5e-06 Score=89.01 Aligned_cols=70 Identities=21% Similarity=0.495 Sum_probs=50.5
Q ss_pred HhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc-----chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 643 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG-----ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 643 ~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~-----~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...++|...+.||+|+||.||+|+...+ +..||||.+...... ..+.+.+|+.++.+++|||||++++++
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 81 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNT--NQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAF 81 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSC--CSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCC--CcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEE
Confidence 3456788889999999999999997544 348999999643221 124688999999999999999999986
No 288
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=98.15 E-value=1.7e-06 Score=84.89 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=55.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+..++ ..||+|.+..... ..+++.+|+.++++++||||+++++++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~ 72 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNK---DKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVC 72 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTT---EEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred hhheeeeeEecCCCceeEEEEEecCC---CeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 45677789999999999999998644 3799999975432 346799999999999999999999987
No 289
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=98.15 E-value=2.4e-06 Score=85.92 Aligned_cols=68 Identities=26% Similarity=0.414 Sum_probs=53.9
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC---cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~---~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+...++ ..||||++..... ...+.+.+|+.++++++||||+++++++
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 101 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDG--VPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASF 101 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTC--CEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCC--ceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 457888899999999999999975443 4899999975322 2235789999999999999999999986
No 290
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=98.15 E-value=2.5e-06 Score=86.31 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=55.9
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc------chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG------ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~------~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+...++ ..||||.+...... ..+.+.+|+.++++++|||||++++++
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 84 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTG--LEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVY 84 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCC--eEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence 345788899999999999999976543 48999999754321 246799999999999999999999986
No 291
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=98.15 E-value=1.8e-06 Score=86.11 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=56.1
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC---cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~---~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+...++ ..||+|.+..... ...+.+.+|+.++++++|||||+++|++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 84 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTK--EVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFF 84 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCC--ceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeee
Confidence 456788899999999999999986553 3899999975421 2345688999999999999999999986
No 292
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=98.15 E-value=1.2e-06 Score=90.48 Aligned_cols=68 Identities=28% Similarity=0.525 Sum_probs=54.5
Q ss_pred CCccccccCcCCCceEEEEEECCC-CceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 647 GFSLENLIGAGSFGSVYKGILNHD-DHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 647 ~f~~~~~lg~g~~g~vy~~~~~~~-~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.|...+.||+|+||.||+|++.+. ..+..||||.++... ....++|.+|+.++++++|||||+++|+|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~ 159 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGIC 159 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence 355568899999999999997532 244578999997543 23456799999999999999999999986
No 293
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=98.15 E-value=2e-06 Score=92.65 Aligned_cols=68 Identities=15% Similarity=0.298 Sum_probs=52.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC--CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH--RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~--~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+...++ ..||||.+.... ......+.+|+.++++++|||||+++++|
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~ 105 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTH--VERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFF 105 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTC--CEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCC--cEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 345788899999999999999976543 489999997543 23356799999999999999999999986
No 294
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=98.15 E-value=2.6e-06 Score=92.00 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=53.7
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-------------cchHHHHHHHHHHhcCCCCCcceEE
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-------------GASKSFMAQCQALRSVRHRNLVKII 711 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-------------~~~~~~~~e~~~l~~~~h~niv~l~ 711 (715)
...|...+.||+|+||.||+|+...++ ..||||.+..... ...+.+.+|+.++++++|||||+++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~--~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~ 112 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGH--SEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF 112 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTC--CEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCC--cEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 567888899999999999999976553 4899999974321 2245789999999999999999999
Q ss_pred EEe
Q 046340 712 TSC 714 (715)
Q Consensus 712 g~~ 714 (715)
+++
T Consensus 113 ~~~ 115 (504)
T 3q5i_A 113 DVF 115 (504)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 295
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=98.15 E-value=1.9e-06 Score=93.62 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=51.9
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHH---HHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMA---QCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~---e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||+||+|+...+ +..||||.++... ......+.+ ++.+++.++|||||+++++.
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~t--g~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f 261 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADT--GKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF 261 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTT--CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCC--CCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEE
Confidence 46788899999999999999997655 4499999996432 222333333 46777889999999999874
No 296
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=98.14 E-value=1.2e-06 Score=88.90 Aligned_cols=78 Identities=24% Similarity=0.438 Sum_probs=62.0
Q ss_pred ccchHHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC-CCCCcceEEE
Q 046340 634 LRVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV-RHRNLVKIIT 712 (715)
Q Consensus 634 ~~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~-~h~niv~l~g 712 (715)
..+...++....+.|...+.||+|+||.||+|+....+ ..||||.+.... ...+.+.+|+.++.++ +||||++++|
T Consensus 12 ~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~ 88 (326)
T 2x7f_A 12 DEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTG--QLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYG 88 (326)
T ss_dssp ----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEE
T ss_pred hhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCC--CeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeee
Confidence 34555666777888999999999999999999976443 389999997543 2356799999999998 8999999999
Q ss_pred Ee
Q 046340 713 SC 714 (715)
Q Consensus 713 ~~ 714 (715)
++
T Consensus 89 ~~ 90 (326)
T 2x7f_A 89 AF 90 (326)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 297
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=98.14 E-value=1.8e-06 Score=88.38 Aligned_cols=75 Identities=20% Similarity=0.434 Sum_probs=58.5
Q ss_pred HHHHhhcCCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccC-CcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 640 NLIKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQH-RGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 640 ~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
+++...++|...+.||+|+||.||+|+... ...+..||||.+.... ....+.+.+|+.++.++ +|||||+++|++
T Consensus 39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 118 (344)
T 1rjb_A 39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC 118 (344)
T ss_dssp GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 445566788889999999999999999632 2245689999997432 23346799999999999 999999999987
No 298
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=98.14 E-value=2.9e-06 Score=86.27 Aligned_cols=69 Identities=28% Similarity=0.507 Sum_probs=54.3
Q ss_pred cCCccccccCcCCCceEEEEEECCC--CceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHD--DHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~--~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..|...+.||+|+||.||+|+.... ..+..||||.++.... .....+.+|+.++++++|||||+++|++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 115 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVI 115 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 3455678899999999999997543 2345699999975432 2345789999999999999999999986
No 299
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=98.14 E-value=1.7e-06 Score=91.43 Aligned_cols=68 Identities=24% Similarity=0.406 Sum_probs=56.4
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...+ +..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~--~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~ 94 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNT--EKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLI 94 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTT--TEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEEC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCC--CcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEE
Confidence 46788889999999999999997655 34899999974322 2345789999999999999999999986
No 300
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=98.13 E-value=2.1e-06 Score=88.48 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=57.0
Q ss_pred HhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 643 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 643 ~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.....|...+.||+|+||.||+|+...+ +..||||++..... ...+.+.+|+.++.+++|||||++++++
T Consensus 24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~ 94 (364)
T 3qyz_A 24 DVGPRYTNLSYIGEGAYGMVCSAYDNLN--KVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDII 94 (364)
T ss_dssp CCTTTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEE
T ss_pred cccccEEEEEEeecCCCeEEEEEEECCC--CeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEE
Confidence 3356788889999999999999997554 34899999975432 2235789999999999999999999876
No 301
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=98.13 E-value=2.8e-06 Score=85.75 Aligned_cols=68 Identities=24% Similarity=0.354 Sum_probs=54.1
Q ss_pred CCccccccCcCCCceEEEEEECC--CCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 647 GFSLENLIGAGSFGSVYKGILNH--DDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 647 ~f~~~~~lg~g~~g~vy~~~~~~--~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.|...+.||+|+||.||++++.. ...+..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 102 (318)
T 3lxp_A 32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCC 102 (318)
T ss_dssp GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEE
Confidence 34777899999999999998742 22456899999975432 2345789999999999999999999986
No 302
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=98.13 E-value=2.6e-06 Score=90.60 Aligned_cols=68 Identities=28% Similarity=0.402 Sum_probs=56.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...+ +..||||++.... ....+.+.+|+.+++.++|||||++++++
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~--g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~ 85 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELT--GHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVI 85 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTT--CCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCC--CCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 45688889999999999999997644 3489999996432 22345789999999999999999999986
No 303
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=98.12 E-value=3.1e-06 Score=84.57 Aligned_cols=67 Identities=27% Similarity=0.501 Sum_probs=53.1
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|+....+ ..||||.+..... ...+.+.+|+.++++++||||+++++++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 71 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTG--EVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVI 71 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTC--CEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCC--ceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEE
Confidence 56788899999999999999976443 4899999964432 2246789999999999999999999986
No 304
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=98.12 E-value=2.4e-06 Score=91.88 Aligned_cols=68 Identities=24% Similarity=0.419 Sum_probs=56.1
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc--CCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ--HRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~--~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+...++ ..||||++... .......+.+|+.++++++|||||++++++
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~ 90 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQ--QEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEIL 90 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTC--CEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCC--CEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEE
Confidence 346788899999999999999976443 48999999643 223456799999999999999999999986
No 305
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=98.12 E-value=3.3e-06 Score=83.26 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=56.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ ..||||.+.... ....+.+.+|+.++++++||||+++++++
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 74 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTE--EAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTC--CEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCC--cEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEE
Confidence 356788899999999999999976443 389999997543 23346789999999999999999999986
No 306
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=98.12 E-value=2e-06 Score=89.69 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=56.4
Q ss_pred hcCCccccccCcC--CCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAG--SFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g--~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+| +||.||+|+...++ ..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~ 95 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTG--EYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATF 95 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTC--CEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCC--CEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEE
Confidence 5678888999999 99999999986543 4899999975432 2235688999999999999999999986
No 307
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=98.12 E-value=1.8e-06 Score=88.98 Aligned_cols=68 Identities=21% Similarity=0.338 Sum_probs=51.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...+ +..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~ 97 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKT--GLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVF 97 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTT--TEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEE
T ss_pred CCceEEeeEEeecCCeEEEEEEECCC--CCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 46788889999999999999986544 34899999964322 2345788999999999999999999986
No 308
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=98.12 E-value=2e-06 Score=86.10 Aligned_cols=67 Identities=21% Similarity=0.348 Sum_probs=55.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||.+.... ...+.+.+|+.++++++||||++++|++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 71 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDS--RYYAIKKIRHTE-EKLSTILSEVMLLASLNHQYVVRYYAAW 71 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEEEH-HHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred cccchhhheeccCCcEEEEEEEEcCCC--eEEEEEEEeccH-HHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 456788899999999999999975443 489999996432 2346789999999999999999999875
No 309
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=98.12 E-value=4.4e-06 Score=83.62 Aligned_cols=68 Identities=28% Similarity=0.450 Sum_probs=56.4
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|+....+ ..||||.+.... ....+.+.+|+.++++++||||++++|++
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 89 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQ--KVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSY 89 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTC--CEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCC--cEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEE
Confidence 345778899999999999999975443 489999997543 33457899999999999999999999986
No 310
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=98.12 E-value=1.6e-06 Score=89.36 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=49.5
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|+.... +..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~ 93 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRT--GAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVF 93 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTT--CCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEE
T ss_pred cceEEEeEEeeecCCeEEEEEEECCC--CCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeE
Confidence 46788889999999999999997544 34899999964322 2235688999999999999999999886
No 311
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=98.12 E-value=2.3e-06 Score=87.17 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=56.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC---cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~---~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+++..+++ ..||+|.+..... ...+.+.+|+.++++++|||||+++|++
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 110 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTK--EVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFF 110 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCC--CEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 456788899999999999999976554 3899999975421 2345789999999999999999999986
No 312
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=98.12 E-value=1.7e-06 Score=85.55 Aligned_cols=65 Identities=29% Similarity=0.494 Sum_probs=54.2
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+..+ ..||||.++... ..+.+.+|+.++.+++|||||++++++
T Consensus 19 ~~~~y~~~~~lg~G~~g~V~~~~~~~----~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~ 83 (278)
T 1byg_A 19 NMKELKLLQTIGKGEFGDVMLGDYRG----NKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVI 83 (278)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETT----EEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEE
T ss_pred ChhhceEEeEEecCCCceEEEEEEcC----CEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 35678888999999999999999753 389999997432 356799999999999999999999986
No 313
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=98.12 E-value=2.9e-06 Score=83.79 Aligned_cols=68 Identities=22% Similarity=0.437 Sum_probs=55.7
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ ..||||.+.... ....+.+.+|+.++++++||||+++++++
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 80 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTG--LEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYF 80 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCC--ceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEE
Confidence 456888899999999999999975443 489999996432 22346789999999999999999999986
No 314
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=98.11 E-value=2.5e-06 Score=91.69 Aligned_cols=68 Identities=25% Similarity=0.399 Sum_probs=56.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|+.... +..||||++.... ....+.+.+|+.++++++|||||++++++
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~ 95 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKIT--GQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFF 95 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCC--CCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 34677889999999999999997644 3489999996542 23456799999999999999999999986
No 315
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=98.11 E-value=3.3e-06 Score=84.79 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=55.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc---chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG---ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~---~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||.+...... ..+.+.+|+.++.+++||||+++++++
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~ 103 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRE--RIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFG 103 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTT--EEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCC--eEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEE
Confidence 567888999999999999999976543 48999999754322 235789999999999999999999986
No 316
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=98.11 E-value=1.9e-06 Score=90.99 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=54.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|..... +..||+|.+..... ...+.+.+|+.++++++|||||++++++
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~--~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~ 79 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLA--GQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSI 79 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTT--TEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCC--CcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEE
Confidence 45688889999999999999996554 34899999975432 2235689999999999999999999986
No 317
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=98.11 E-value=3.5e-06 Score=83.75 Aligned_cols=66 Identities=27% Similarity=0.401 Sum_probs=53.4
Q ss_pred CCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 647 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 647 ~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.|...+.||+|+||.||+|....++ ..||+|.+..... ...+.+.+|+.++++++|||||++++++
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~--~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 94 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETT--VEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSW 94 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCc--eEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeee
Confidence 3566678999999999999976553 4899999975432 2345689999999999999999999875
No 318
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=98.11 E-value=1.2e-06 Score=88.19 Aligned_cols=67 Identities=27% Similarity=0.349 Sum_probs=51.5
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc--chHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG--ASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~--~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|+...++ ..||||++...... ....+.+|+..+.++ +|||||+++++|
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~ 126 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDG--RLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAW 126 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTS--CEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCC--eEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 56888899999999999999986543 38999998643322 223566677666665 999999999987
No 319
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=98.11 E-value=2.7e-06 Score=86.83 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=55.4
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC---cchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~---~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+...++ ..||||++..... ...+.+.+|+.++.++ +|||||++++++
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~--~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~ 79 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTD--RIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF 79 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCC--CEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEE
Confidence 456888899999999999999986553 4899999975432 2234578999999988 899999999985
No 320
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=98.11 E-value=2.2e-06 Score=88.23 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=56.4
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ ..||+|.+..... ...+.+.+|+.++++++|||||++++++
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 100 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSG--LVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAF 100 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTC--CEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCC--cEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEE
Confidence 456888899999999999999986543 4899999975432 2245789999999999999999999986
No 321
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=98.10 E-value=1.4e-06 Score=88.66 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=55.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc--------chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG--------ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~--------~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ ..||||.+...... ..+.+.+|+.++.+++|||||++++++
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~ 98 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKN--KEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIF 98 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTT--EEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEE
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCC--cEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 456888899999999999999976543 48999999754311 223578899999999999999999986
No 322
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=98.10 E-value=2.9e-06 Score=87.36 Aligned_cols=73 Identities=26% Similarity=0.355 Sum_probs=49.0
Q ss_pred HHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 639 QNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 639 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.......++|...+.||+|+||.||+|+....+ ..||||++..... ....+.+|+..++.++|||||++++++
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~ 88 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTG--MSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYF 88 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTC--CEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEE
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCC--CEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhh
Confidence 345666789999999999999999999976543 4899999865432 234577888889999999999999986
No 323
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=98.10 E-value=2.3e-06 Score=85.88 Aligned_cols=68 Identities=32% Similarity=0.468 Sum_probs=54.9
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+....+|...+.||+|+||.||+|+..+ .+|||.++.... ...+.|.+|+.++++++|||||+++|++
T Consensus 32 ~i~~~~~~~~~~lG~G~~g~Vy~~~~~~-----~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 101 (307)
T 3lb7_A 32 EIEASEVMLSTRIGSGSFGTVYKGKWHG-----DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYM 101 (307)
T ss_dssp BCCTTSCCEEEEEEECSSCEEEEEESSS-----EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred EecccceEEEeEecCCCCeEEEEEEECC-----EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 3345678888999999999999998532 589999875432 2235789999999999999999999986
No 324
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=98.10 E-value=3.1e-06 Score=83.90 Aligned_cols=68 Identities=24% Similarity=0.461 Sum_probs=56.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||.+.... ....+.+.+|+.++++++||||+++++++
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 83 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNK--FIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYF 83 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCC--cEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEE
Confidence 456888899999999999999976553 489999996432 22346789999999999999999999986
No 325
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=98.10 E-value=3e-06 Score=87.59 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=55.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+.... +..||||++..... ...+.+.+|+.++++++|||||++++++
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~ 93 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAIL--ERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVF 93 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhheeEeeeeEecCCEEEEEEEECCC--CceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEee
Confidence 46788889999999999999986544 34899999975322 2235688999999999999999999986
No 326
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=98.10 E-value=3.4e-06 Score=85.49 Aligned_cols=70 Identities=26% Similarity=0.505 Sum_probs=55.7
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCc--eeEEEEEEeecc-CCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVKVLNLQ-HRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~--~~~~avk~l~~~-~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+....+. ...||+|.+... .....+.+.+|+.++++++|||||+++++|
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 86 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGIC 86 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEE
Confidence 4568888999999999999999754422 224688888543 234467899999999999999999999986
No 327
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=98.09 E-value=3.4e-06 Score=86.21 Aligned_cols=68 Identities=26% Similarity=0.292 Sum_probs=56.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||.+.... ....+.+.+|+.++.+++|||||++++++
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 110 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESG--NHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSF 110 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTC--CEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCC--CEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 457888899999999999999976543 489999996432 23456789999999999999999999875
No 328
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=98.09 E-value=2.3e-06 Score=88.88 Aligned_cols=73 Identities=22% Similarity=0.411 Sum_probs=57.6
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCC-----CceeEEEEEEeeccCC-cchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHD-----DHETLVAVKVLNLQHR-GASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~-----~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
+...++|...+.||+|+||.||+|+..+. ..+..||||++..... ...+.+.+|++++.++ +|||||+++|+|
T Consensus 65 ~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~ 144 (382)
T 3tt0_A 65 ELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGAC 144 (382)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeee
Confidence 33456788889999999999999996421 2345799999975432 2336789999999999 999999999987
No 329
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=98.09 E-value=2.2e-06 Score=87.19 Aligned_cols=73 Identities=21% Similarity=0.403 Sum_probs=56.9
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCC-----CceeEEEEEEeeccCC-cchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHD-----DHETLVAVKVLNLQHR-GASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~-----~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
....++|...+.||+|+||.||+|+..+. ..+..||||++..... ...+.+.+|+.++.++ +|||||+++|+|
T Consensus 31 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 110 (334)
T 2pvf_A 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC 110 (334)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEE
Confidence 33456788889999999999999997521 2345899999975432 2345789999999999 999999999987
No 330
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=98.09 E-value=5.3e-06 Score=83.56 Aligned_cols=68 Identities=24% Similarity=0.436 Sum_probs=51.1
Q ss_pred HhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 643 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 643 ~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.....|...+.||+|+||.||+|+....+ ..||||.+.... ..+.+.+|+.++.+++||||++++|++
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~ 93 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETG--QIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSY 93 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTC--CEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCC--CEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEE
Confidence 34567888899999999999999976543 489999997543 346799999999999999999999986
No 331
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=98.09 E-value=2.2e-06 Score=85.25 Aligned_cols=69 Identities=32% Similarity=0.470 Sum_probs=56.2
Q ss_pred HHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 641 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+...++|...+.||+|+||.||+|+..+ .||||++..... ...+.|.+|+.++++++|||||+++|++
T Consensus 19 ~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~-----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 89 (289)
T 3og7_A 19 WEIPDGQITVGQRIGSGSFGTVYKGKWHG-----DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89 (289)
T ss_dssp CBCCTTSCEEEEEEEECSSEEEEEEESSS-----EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred CccCccceeeeeEecCCCCeEEEEEEEcC-----ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 34456678888999999999999998532 599999975432 2345799999999999999999999975
No 332
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=98.09 E-value=2.6e-06 Score=84.73 Aligned_cols=70 Identities=30% Similarity=0.477 Sum_probs=49.4
Q ss_pred hcCCccccccCcCCCceEEEEEECC-CCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|++.. .+.+..||||.++... ....+.+.+|+.++.+++|||||+++|++
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 90 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVV 90 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEE
Confidence 4567888999999999999999743 2234469999997542 23346789999999999999999999986
No 333
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=98.09 E-value=3.8e-06 Score=82.80 Aligned_cols=68 Identities=28% Similarity=0.406 Sum_probs=56.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ ..||||.+.... ....+.+.+|+.++++++||||+++++++
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 80 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTG--HKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVI 80 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCC--ceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEE
Confidence 457888899999999999999976443 389999996432 23346789999999999999999999986
No 334
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=98.09 E-value=1e-06 Score=89.18 Aligned_cols=67 Identities=27% Similarity=0.496 Sum_probs=52.4
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc-chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG-ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~-~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|+...++ ..||||++...... ....+.+|+.++++++|||||++++++
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 69 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTD--NLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDII 69 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCC--cEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEE
Confidence 46778899999999999999976543 38999999644321 122466899999999999999999986
No 335
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=98.08 E-value=3.7e-06 Score=84.09 Aligned_cols=63 Identities=27% Similarity=0.517 Sum_probs=50.9
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhc--CCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS--VRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~--~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+..+ ..||||++... ....+.+|.+++.. ++|||||+++|++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~----~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~ 71 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSWQG----ENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASD 71 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEETT----EEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEECC----EEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEee
Confidence 4578888999999999999999742 38999999643 34567777777766 8999999999985
No 336
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=98.08 E-value=3e-06 Score=84.62 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=53.6
Q ss_pred CccccccCcCCCceEEEEEECCC-CceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 648 FSLENLIGAGSFGSVYKGILNHD-DHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 648 f~~~~~lg~g~~g~vy~~~~~~~-~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
|...+.||+|+||.||+|++.++ ..+..||+|.+..... ...+.|.+|+.++++++|||||++++++
T Consensus 23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 91 (298)
T 3pls_A 23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIM 91 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEE
T ss_pred EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEE
Confidence 44568899999999999997433 2345799999975433 2346789999999999999999999986
No 337
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=98.08 E-value=2.5e-06 Score=85.27 Aligned_cols=70 Identities=27% Similarity=0.508 Sum_probs=54.1
Q ss_pred hcCCccccccCcCCCceEEEEEECCC-CceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~-~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|+..+. .....+|||.+..... ...+.+.+|+.++++++|||||+++++|
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 95 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGIC 95 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEE
Confidence 34567778999999999999997543 2334689999975433 2346789999999999999999999986
No 338
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=98.08 E-value=2.6e-06 Score=88.32 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=55.3
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
...+|...+.||+|+||.||+|+...++ ..||||+++... ....+.+.+|..++.++ +|||||++++++
T Consensus 50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~--~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~ 122 (396)
T 4dc2_A 50 GLQDFDLLRVIGRGSYAKVLLVRLKKTD--RIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF 122 (396)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred ChhHcEEEEEEeeCCCeEEEEEEECCCC--CEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEE
Confidence 3567888899999999999999987654 489999997542 22234688999999887 899999999975
No 339
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=98.08 E-value=3e-06 Score=86.35 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=56.3
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
....++|...+.||+|+||.||+|+...++ ..||||+++... ....+.+.+|..++..+ +|||||++++++
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~ 87 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTN--QFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTF 87 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTT--EEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCC--CEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEE
Confidence 345678999999999999999999986553 489999997532 23356688999999876 999999999875
No 340
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=98.07 E-value=2.8e-06 Score=85.99 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=53.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--------cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--------GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--------~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||.+..... .....+.+|+.++.+++|||||++++++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 84 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTC--KKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF 84 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCC--cEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEE
Confidence 456888899999999999999976543 4899999964321 1123588999999999999999999985
No 341
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=98.07 E-value=3.4e-06 Score=87.17 Aligned_cols=68 Identities=21% Similarity=0.357 Sum_probs=55.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc--chHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG--ASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~--~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+.... +..||||++...... ..+.+.+|+.++++++|||||++++++
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~ 110 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRS--GEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVF 110 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEE
T ss_pred cccEEEEeEEecCCCeEEEEEEECCC--CCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhhe
Confidence 45778889999999999999997654 348999999754322 235788999999999999999999986
No 342
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.07 E-value=3.6e-06 Score=84.52 Aligned_cols=69 Identities=30% Similarity=0.537 Sum_probs=52.4
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC-----CcchHHHHHHHHHHhcCC---CCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-----RGASKSFMAQCQALRSVR---HRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-----~~~~~~~~~e~~~l~~~~---h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+.... +..||||++.... ......+.+|+.++++++ |||||+++++|
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~ 83 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHS--GHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVC 83 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTT--CCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEE
T ss_pred cccceEEEEEEecCCCeEEEEEEECCC--CcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeee
Confidence 356889999999999999999996444 3489999996432 112356788888887764 99999999986
No 343
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=98.07 E-value=4.2e-06 Score=83.04 Aligned_cols=68 Identities=24% Similarity=0.415 Sum_probs=56.7
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC--CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH--RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~--~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+....+ ..||||.+.... ....+.+.+|+.++++++||||+++++++
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~--~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 90 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQ--QEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEIL 90 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCC--cEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEE
Confidence 457888899999999999999976443 389999996442 23456799999999999999999999986
No 344
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=98.07 E-value=2.2e-06 Score=86.86 Aligned_cols=69 Identities=23% Similarity=0.461 Sum_probs=53.9
Q ss_pred cCCccccccCcCCCceEEEEEECCCCc--eeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~--~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+|...+.||+|+||.||+|+....+. ...||+|.+.... ......+.+|+.++++++|||||+++|+|
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 84 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLC 84 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEE
Confidence 467778899999999999999754432 2248888885432 23335688999999999999999999987
No 345
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=98.07 E-value=2.9e-06 Score=85.93 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=50.5
Q ss_pred hcCCccccccCcCCCceEEEEEECC-CCceeEEEEEEeeccC----CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVKVLNLQH----RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~~~~avk~l~~~~----~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+++... ...+..||+|.++... ......+.+|+.++++++|||||++++++
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 90 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAF 90 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEE
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEE
Confidence 4678888999999999999999741 1234589999997542 12234678999999999999999999986
No 346
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=98.06 E-value=3.4e-06 Score=85.56 Aligned_cols=69 Identities=22% Similarity=0.518 Sum_probs=54.2
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC-CcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|+...++....||+|.+.... ....+.+.+|++++.++ +|||||++++++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 95 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC 95 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceee
Confidence 5678889999999999999997655443356999997432 23345799999999999 999999999986
No 347
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=98.06 E-value=1.9e-06 Score=88.68 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=64.1
Q ss_pred ccccchHHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCC-----CCC
Q 046340 632 SVLRVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVR-----HRN 706 (715)
Q Consensus 632 ~~~~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~-----h~n 706 (715)
....+++++.....++|...+.||+|+||.||+|+...++ ..||||+++.. ....+.+.+|+.++.+++ |||
T Consensus 21 ~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~ 97 (360)
T 3llt_A 21 EIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNK--KYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNN 97 (360)
T ss_dssp GGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGG
T ss_pred cceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCC--eEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCC
Confidence 4455666666677889999999999999999999986543 48999999643 223456888999999886 999
Q ss_pred cceEEEEe
Q 046340 707 LVKIITSC 714 (715)
Q Consensus 707 iv~l~g~~ 714 (715)
||+++|++
T Consensus 98 iv~~~~~~ 105 (360)
T 3llt_A 98 IVKYHGKF 105 (360)
T ss_dssp BCCEEEEE
T ss_pred eeccccee
Confidence 99999976
No 348
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=98.06 E-value=3.7e-06 Score=83.22 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=53.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+....+ ..||+|++.... +.+.+|+.++.+++||||++++|++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~ 73 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDG--KTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCW 73 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTC--CEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccccceeeeeccCCceEEEEEEEcCCC--eEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeE
Confidence 356788899999999999999986443 389999997543 3578999999999999999999875
No 349
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=98.05 E-value=3.9e-06 Score=86.11 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=55.5
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+.... +..||||.+..... ...+.+.+|+.++++++|||||++++++
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 92 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRS--GEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVF 92 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEE
T ss_pred CceEEEeeeEecCCCeEEEEEEECCC--CCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheE
Confidence 35678889999999999999997654 34899999965322 2235788999999999999999999986
No 350
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=98.05 E-value=4e-06 Score=83.17 Aligned_cols=68 Identities=24% Similarity=0.344 Sum_probs=56.1
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC--CcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH--RGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~--~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ ..||||.+.... .....++.+|+..+.++ +|||||++++++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~ 80 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDG--CIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAW 80 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCC--ceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeee
Confidence 456888899999999999999976443 389999997542 23345788999999999 999999999986
No 351
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=98.05 E-value=3.8e-06 Score=84.05 Aligned_cols=62 Identities=27% Similarity=0.543 Sum_probs=49.5
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhc--CCCCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS--VRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~--~~h~niv~l~g~~ 714 (715)
++|...+.||+|+||.||+|+..+ ..||||++... ....+.+|.+++.. ++|||||++++++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~----~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~ 66 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKWRG----EEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAAD 66 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CTT----SCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEE
T ss_pred ceeeehhhccCCCCeEEEEEEEcC----cceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeec
Confidence 467888999999999999998643 27999998633 34678889999987 7999999999986
No 352
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=98.03 E-value=3.4e-06 Score=86.27 Aligned_cols=69 Identities=26% Similarity=0.381 Sum_probs=55.4
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+...++ ..||||+++... ....+.+.+|+.++..+ +|||||++++++
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~--~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~ 93 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETG--DLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF 93 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCC--CEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEE
Confidence 3568888999999999999999986553 489999997431 22345688999999988 799999999875
No 353
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=98.03 E-value=3.8e-06 Score=90.84 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=56.9
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc---CCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ---HRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~---~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+...+ +..||||++... .......+.+|+.++.+++|||||++++++
T Consensus 182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~t--g~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~ 253 (576)
T 2acx_A 182 TKNTFRQYRVLGKGGFGEVCACQVRAT--GKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAY 253 (576)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cccceEEEEEEeeCCCEEEEEEEECCC--CCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEE
Confidence 356788889999999999999998654 348999999643 233456789999999999999999999875
No 354
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=98.03 E-value=5e-06 Score=84.37 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=54.5
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCC-CCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVR-HRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~-h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||.++.. ..+.+.+|+.++.+++ ||||+++++++
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~ 100 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNN--EKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIV 100 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCC--cEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeee
Confidence 356788899999999999999975543 48999999643 3467999999999997 99999999985
No 355
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=98.03 E-value=6.6e-06 Score=83.21 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=49.9
Q ss_pred ccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCC-CCCcceEEEEe
Q 046340 651 ENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVR-HRNLVKIITSC 714 (715)
Q Consensus 651 ~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~-h~niv~l~g~~ 714 (715)
.+.||+|+||.||+|+...++ ..||||++... ....+.+|+.++..+. |||||++++++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~--~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~ 75 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSN--QAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVF 75 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTC--CEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred CCccccCCCeEEEEEEECCCC--CEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEE
Confidence 478999999999999986543 48999999643 3467889999999997 99999999986
No 356
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=98.02 E-value=4.5e-06 Score=83.33 Aligned_cols=68 Identities=18% Similarity=0.324 Sum_probs=55.1
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC---------cchHHHHHHHHHHhcCC-CCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---------GASKSFMAQCQALRSVR-HRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~---------~~~~~~~~e~~~l~~~~-h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ ..||||.++.... ...+.+.+|+.++.++. |||||++++++
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 93 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTC--KEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY 93 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred hhccceeeeecCCCceEEEEEEEcCcC--ceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence 567888899999999999999976543 4899999975431 11246789999999995 99999999986
No 357
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=98.02 E-value=1.7e-06 Score=86.62 Aligned_cols=72 Identities=25% Similarity=0.385 Sum_probs=42.6
Q ss_pred HHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 641 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+.....+|...+.||+|+||.||+|+.... +..||||.+.... ....+++.+|+.++.+++|||||++++++
T Consensus 10 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~ 82 (303)
T 2vwi_A 10 WSINRDDYELQEVIGSGATAVVQAAYCAPK--KEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSF 82 (303)
T ss_dssp ---CCCCCEEEEECC---CCCEEEEEC------CEEEEECCC----------------CCCCCCCTTBCCEEEEE
T ss_pred cccchhhhhhhheeccccceEEEEEEECCC--CcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEE
Confidence 344567888999999999999999986443 3489999996443 23345788999999999999999999986
No 358
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=98.01 E-value=5.7e-06 Score=86.11 Aligned_cols=69 Identities=22% Similarity=0.358 Sum_probs=48.2
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC--CcchHHHHHHHHHHhcCC-CCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH--RGASKSFMAQCQALRSVR-HRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~--~~~~~~~~~e~~~l~~~~-h~niv~l~g~~ 714 (715)
...+|...+.||+|+||.||+|+.... +..||||++.... ......+.+|+.++.++. |||||++++++
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~ 78 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRT--GEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVL 78 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTT--CCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCC--CCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEE
Confidence 356788889999999999999997554 3489999996432 223356889999999997 99999999986
No 359
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=97.99 E-value=5.3e-06 Score=84.23 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=53.7
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+...+ +..||||.+..... .+.+.+|+.+++++ +||||+++++++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~ 74 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYT--NEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFG 74 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTT--TEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCC--CcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence 35788889999999999999996544 34899999975432 34689999999999 999999999875
No 360
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=97.99 E-value=6.3e-06 Score=88.83 Aligned_cols=68 Identities=26% Similarity=0.357 Sum_probs=56.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+...++ ..||||++.... ....+.+.+|+.++++++|||||++++++
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg--~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~ 254 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATG--KLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAF 254 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTC--CEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCC--cEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence 456788889999999999999986543 489999996432 23356789999999999999999999875
No 361
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=97.99 E-value=5.5e-06 Score=92.09 Aligned_cols=73 Identities=25% Similarity=0.391 Sum_probs=58.1
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCC-CceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~-~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+...++|...+.||+|+||.||+|++... ..+..||||+++.... ...+.|.+|+.++++++|||||+++|++
T Consensus 386 ~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~ 460 (656)
T 2j0j_A 386 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI 460 (656)
T ss_dssp BCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 33456678889999999999999998543 2345799999875432 2236799999999999999999999986
No 362
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=97.99 E-value=3.3e-06 Score=86.44 Aligned_cols=66 Identities=9% Similarity=0.142 Sum_probs=54.4
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc---c--------------hHHHHHHHHHHhcCCCCCc
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG---A--------------SKSFMAQCQALRSVRHRNL 707 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~---~--------------~~~~~~e~~~l~~~~h~ni 707 (715)
.++|...+.||+|+||.||+|+. ++ ..||||.+...... . .+.|.+|+.++++++||||
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~---~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 105 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DN---KFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYC 105 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TT---EEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTB
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CC---ceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCc
Confidence 46788889999999999999997 32 38999999643211 1 1779999999999999999
Q ss_pred ceEEEEe
Q 046340 708 VKIITSC 714 (715)
Q Consensus 708 v~l~g~~ 714 (715)
|+++|++
T Consensus 106 ~~~~~~~ 112 (348)
T 2pml_X 106 LTCEGII 112 (348)
T ss_dssp CCCSEEE
T ss_pred ceEEEEE
Confidence 9999986
No 363
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=97.99 E-value=6.9e-06 Score=83.84 Aligned_cols=67 Identities=16% Similarity=0.313 Sum_probs=54.7
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCCC--CCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVRH--RNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~h--~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|...++ ..||||++..... ...+.+.+|+.++.+++| ||||++++++
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~ 78 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKK---QIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE 78 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTS---CEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCC---CEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeE
Confidence 45688889999999999999986443 4899999975432 223578999999999987 9999999986
No 364
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=97.97 E-value=1e-05 Score=82.04 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=53.0
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHH-HHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQ-ALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~-~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+...++ ..||||++..... ....++.+|+. +++.++|||||+++|++
T Consensus 20 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~ 90 (327)
T 3aln_A 20 TAEDLKDLGEIGRGAYGSVNKMVHKPSG--QIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGAL 90 (327)
T ss_dssp CSCSEEC-CEEEECSSEEEEEEEETTTT--EEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEE
T ss_pred CHHHhhehheeccCCCEEEEEEEEcCCC--CEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEE
Confidence 3567888899999999999999976543 4899999975432 22345666666 67778999999999986
No 365
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=97.97 E-value=2.6e-06 Score=90.53 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=48.2
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc---CCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ---HRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~---~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+.... +..||||.+... .......+.+|+.++++++|||||+++++|
T Consensus 146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~ 217 (446)
T 4ejn_A 146 TMNEFEYLKLLGKGTFGKVILVKEKAT--GRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSF 217 (446)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEE
T ss_pred ChHHcEEeEEEeeCcCEEEEEEEEcCC--CCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEE
Confidence 346788889999999999999997654 348999999743 223345688999999999999999999986
No 366
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=97.97 E-value=9.3e-06 Score=82.79 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=55.1
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHH-HhcCCCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQA-LRSVRHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~-l~~~~h~niv~l~g~~ 714 (715)
+....+|...+.||+|+||.||+|+.... +..||||++..... ....++..|+.+ ++.++|||||+++|++
T Consensus 47 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~--~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~ 119 (340)
T 3an0_A 47 EVKADDLEPIMELGRGAYGVVEKMRHVPS--GQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGAL 119 (340)
T ss_dssp CCCSSCEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEE
T ss_pred EEehhheeEeeEecccCCEEEEEEEEcCC--CCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEE
Confidence 44566788889999999999999997544 34899999975432 233456667666 7788999999999986
No 367
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=97.96 E-value=1e-05 Score=83.29 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=57.0
Q ss_pred HHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc--------chHHHHHHHHHHhcC-CCCCcceEE
Q 046340 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG--------ASKSFMAQCQALRSV-RHRNLVKII 711 (715)
Q Consensus 641 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~--------~~~~~~~e~~~l~~~-~h~niv~l~ 711 (715)
......+|...+.||+|+||.||+|+...++ ..||||.++..... ..+.+.+|+.++.++ +||||++++
T Consensus 89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g--~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 166 (365)
T 2y7j_A 89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATG--HEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI 166 (365)
T ss_dssp HHHHHHHEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred hhhhhhhcccceEEecCCCEEEEEEEECCCC--cEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence 3444567888899999999999999986443 38999999754321 124578999999999 899999999
Q ss_pred EEe
Q 046340 712 TSC 714 (715)
Q Consensus 712 g~~ 714 (715)
+++
T Consensus 167 ~~~ 169 (365)
T 2y7j_A 167 DSY 169 (365)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 368
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=97.95 E-value=3.8e-06 Score=85.53 Aligned_cols=66 Identities=18% Similarity=0.357 Sum_probs=52.1
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--------cchHHHHHHHHHHhcCC---------CCCc
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--------GASKSFMAQCQALRSVR---------HRNL 707 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--------~~~~~~~~e~~~l~~~~---------h~ni 707 (715)
.++|...+.||+|+||.||+|+.. +..||||+++.... ...+.+.+|+.++++++ ||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~----~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~ni 94 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIAD----HTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGF 94 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEET----TEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCB
T ss_pred cccchheeeecccCceEEEEEEeC----CceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCch
Confidence 356777899999999999999963 24899999975421 22367899999998885 9999
Q ss_pred ceEEEEe
Q 046340 708 VKIITSC 714 (715)
Q Consensus 708 v~l~g~~ 714 (715)
|++.+++
T Consensus 95 v~l~~~~ 101 (336)
T 2vuw_A 95 IGLNSVH 101 (336)
T ss_dssp CCEEEEE
T ss_pred hhhccee
Confidence 9988864
No 369
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=97.95 E-value=1.1e-06 Score=91.21 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=50.9
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc---CCcchHHHHHHH---HHHhcCCCCCcceEEE
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ---HRGASKSFMAQC---QALRSVRHRNLVKIIT 712 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~---~~~~~~~~~~e~---~~l~~~~h~niv~l~g 712 (715)
.++|...+.||+|+||.||+|+...+ +..||||++... .....+.|.+|+ .++++++|||||++++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~ 143 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQET--GESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHL 143 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CC--CCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHH
T ss_pred CceEEEcceeecCCCEEEEEEEECCC--CcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHh
Confidence 46677889999999999999996543 348999999743 223346789999 5566778999999874
No 370
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=97.94 E-value=5.6e-06 Score=84.32 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=52.5
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||.++.... ++.+|++++.++ +|||||++++++
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~ 85 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATN--MEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVY 85 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCC--CEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEE
Confidence 456888899999999999999976543 4899999975432 346788999888 899999999985
No 371
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=97.92 E-value=4.9e-06 Score=84.31 Aligned_cols=71 Identities=27% Similarity=0.483 Sum_probs=54.4
Q ss_pred HhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcC---CCCCcceEEEEe
Q 046340 643 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSV---RHRNLVKIITSC 714 (715)
Q Consensus 643 ~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~---~h~niv~l~g~~ 714 (715)
.+..+|...+.||+|+||.||+|+.... .+..||||++..... .....+.+|+.+++.+ +|||||+++++|
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~ 83 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKN-GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVC 83 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTT-TTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCC-CCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeee
Confidence 4457788899999999999999997422 234899999964322 2234677888887766 899999999986
No 372
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=97.92 E-value=8.5e-06 Score=80.91 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=50.5
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc-chHH-HHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG-ASKS-FMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~-~~~~-~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+.... +..||||++...... ...+ +.++...++.++|||||++++++
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~ 75 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPS--GQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGAL 75 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCC--CeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeee
Confidence 46788889999999999999997544 348999999754322 1223 44555558889999999999986
No 373
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=97.90 E-value=1e-05 Score=84.08 Aligned_cols=66 Identities=17% Similarity=0.320 Sum_probs=53.8
Q ss_pred cCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCC--CCCcceEEEEe
Q 046340 646 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVR--HRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~--h~niv~l~g~~ 714 (715)
..|...+.||+|+||.||+|.... +..||||++..... ...+.+.+|+.++.+++ |||||++++++
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~ 125 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEK---KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE 125 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTT---CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCC---CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEE
Confidence 458888999999999999998654 34899999975432 23467999999999996 59999999986
No 374
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=97.89 E-value=6.6e-06 Score=84.70 Aligned_cols=68 Identities=31% Similarity=0.466 Sum_probs=47.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC---CcchHHHHHHHHH-HhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH---RGASKSFMAQCQA-LRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~---~~~~~~~~~e~~~-l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||++.... ....+.+.+|..+ ++.++|||||++++++
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~--~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~ 108 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEE--VFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSF 108 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTC--CEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCC--CEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEE
Confidence 467888899999999999999986553 489999997543 2223456777777 5678999999999875
No 375
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=97.89 E-value=4e-06 Score=84.33 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=51.8
Q ss_pred HHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc------chHHHHHHHHHHhcC----CCCCcceE
Q 046340 641 LIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG------ASKSFMAQCQALRSV----RHRNLVKI 710 (715)
Q Consensus 641 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~------~~~~~~~e~~~l~~~----~h~niv~l 710 (715)
.+...++|...+.||+|+||.||+|+...+ +..||||.+...... ....+.+|+.++.++ +|||||++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~ 103 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTD--RLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRL 103 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTT--CCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccC--CeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeE
Confidence 344567899999999999999999986544 348999999654321 123466899999888 89999999
Q ss_pred EEEe
Q 046340 711 ITSC 714 (715)
Q Consensus 711 ~g~~ 714 (715)
++++
T Consensus 104 ~~~~ 107 (312)
T 2iwi_A 104 LDWF 107 (312)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9986
No 376
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=97.89 E-value=8.2e-06 Score=83.35 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=56.2
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc---CCcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ---HRGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~---~~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+.... +..||||+++.. .....+.+.+|..++..+ +||+||++++++
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~--~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~ 90 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGT--DELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF 90 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTE--EEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCC--CCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEE
Confidence 356888899999999999999997643 458999999743 223456788999999988 899999999875
No 377
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=97.85 E-value=1.4e-05 Score=82.23 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=51.9
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCC---ceeEEEEEEeeccCCcc-----------hHHHHHHHHHHhcCCCCCcce
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDD---HETLVAVKVLNLQHRGA-----------SKSFMAQCQALRSVRHRNLVK 709 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~---~~~~~avk~l~~~~~~~-----------~~~~~~e~~~l~~~~h~niv~ 709 (715)
..++|...+.||+|+||.||+|+...+. .+..||||.+....... ...+..|+..+..++|||||+
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 3567888999999999999999986542 13479999987543110 123445666778889999999
Q ss_pred EEEEe
Q 046340 710 IITSC 714 (715)
Q Consensus 710 l~g~~ 714 (715)
++|++
T Consensus 113 ~~~~~ 117 (364)
T 3op5_A 113 YWGSG 117 (364)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 99986
No 378
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=97.83 E-value=7.7e-06 Score=82.27 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=59.5
Q ss_pred ccchHHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcCC--CCCcce
Q 046340 634 LRVSYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSVR--HRNLVK 709 (715)
Q Consensus 634 ~~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~~--h~niv~ 709 (715)
..+.++.+.....+|...+.||+|+||.||+++..++ ..||||.+..... ...+.+.+|+.++.+++ |||||+
T Consensus 16 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~ 92 (313)
T 3cek_A 16 ENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKK---QIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 92 (313)
T ss_dssp ----CCEEEETTEEEEEEEEEECCSSEEEEEEECTTC---CEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCC
T ss_pred CCCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCC---cEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEE
Confidence 3444555566677899999999999999999996543 3799999975432 23467899999999997 599999
Q ss_pred EEEEe
Q 046340 710 IITSC 714 (715)
Q Consensus 710 l~g~~ 714 (715)
+++++
T Consensus 93 ~~~~~ 97 (313)
T 3cek_A 93 LYDYE 97 (313)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 379
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=97.83 E-value=4.4e-06 Score=91.46 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=53.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC-CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH-RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~-~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|....+ +..||||++.... ....+.+.+|+.++.+++|||||++++++
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~t--g~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~ 81 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDT--GEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVP 81 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTT--TCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECC
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCC--CcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeee
Confidence 46788999999999999999996544 3489999986542 22345789999999999999999999875
No 380
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=97.82 E-value=1.5e-05 Score=82.97 Aligned_cols=63 Identities=30% Similarity=0.401 Sum_probs=50.7
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|+...++ .||+|++..... ...+|+.+++.++|||||++++++
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~---~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~ 101 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESD---EVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFF 101 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTE---EEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCC---eEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEE
Confidence 345788899999999999999986552 489888864322 134799999999999999999886
No 381
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=97.82 E-value=2.6e-05 Score=78.49 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=46.9
Q ss_pred HhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc-chHH-HHHHHHHHhcCCCCCcceEEEEe
Q 046340 643 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG-ASKS-FMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 643 ~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~-~~~~-~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...++|...+.||+|+||.||+|+....+ ..||||.+...... ...+ +.++..+++.++|||||+++|++
T Consensus 22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~ 93 (318)
T 2dyl_A 22 AEINDLENLGEMGSGTCGQVWKMRFRKTG--HVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTF 93 (318)
T ss_dssp CCGGGEEEEEEC------CEEEEEETTTC--CEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred hhhccccccceeeecCCeeEEEEEEecCC--eEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEE
Confidence 33567888899999999999999986543 38999999755332 1223 44555678888999999999986
No 382
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=97.81 E-value=3.6e-06 Score=85.02 Aligned_cols=73 Identities=29% Similarity=0.539 Sum_probs=58.8
Q ss_pred hHHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccC--CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 637 SYQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQH--RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 637 ~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~--~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++++...++|...+.||+|+||.||+|+..+ .||+|.+.... ....+.|.+|+.++++++|||||+++|++
T Consensus 24 ~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~-----~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 98 (319)
T 2y4i_B 24 FLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG-----EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGAC 98 (319)
T ss_dssp CGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS-----SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEE
T ss_pred ccccccCCHHHeEEeeEeccCCceEEEEEEEcC-----eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEE
Confidence 345556667888999999999999999999743 48999996432 22335688999999999999999999986
No 383
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=97.81 E-value=2.1e-05 Score=80.14 Aligned_cols=65 Identities=26% Similarity=0.517 Sum_probs=53.6
Q ss_pred HhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhc--CCCCCcceEEEEe
Q 046340 643 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS--VRHRNLVKIITSC 714 (715)
Q Consensus 643 ~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~--~~h~niv~l~g~~ 714 (715)
...++|...+.||+|+||.||+|+..+ ..||||.+... ....+.+|++++.. ++|||||++++++
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~----~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~ 105 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKWRG----EEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAAD 105 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEETT----EEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEE
T ss_pred cccccEEEEeeecCCCCcEEEEEEEcC----ccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeee
Confidence 335678889999999999999999742 38999999633 34678899999887 7999999999986
No 384
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.79 E-value=1.2e-05 Score=90.26 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=55.6
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-cchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-GASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.+.|...+.||+|+||.||+|+.... .+..||||.+..... ...+.|.+|+.++.+++|||||++++++
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 148 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNV-NGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFV 148 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGG-TTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCC-CCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeE
Confidence 36788889999999999999997541 234899999864322 2235688999999999999999999986
No 385
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=97.78 E-value=2e-05 Score=80.39 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=48.1
Q ss_pred hcCCccccccCcCCCceEEEEEECC-CCceeEEEEEEeeccCCc-----------chHHHHHHHHHHhcCCCCCcceEEE
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVKVLNLQHRG-----------ASKSFMAQCQALRSVRHRNLVKIIT 712 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~~~~avk~l~~~~~~-----------~~~~~~~e~~~l~~~~h~niv~l~g 712 (715)
.++|...+.||+|+||.||+|+... +..+..+|||........ ....+.+|+..+..++|||||+++|
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 3568888999999999999999864 113448999999754321 1234678899999999999999999
Q ss_pred Ee
Q 046340 713 SC 714 (715)
Q Consensus 713 ~~ 714 (715)
++
T Consensus 116 ~~ 117 (345)
T 2v62_A 116 SG 117 (345)
T ss_dssp EE
T ss_pred cc
Confidence 86
No 386
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=97.77 E-value=2e-05 Score=79.75 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=55.0
Q ss_pred HHhhcCCccc-cccCcCCCceEEEEEECCCCceeEEEEEEeeccCC--cchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 642 IKATDGFSLE-NLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR--GASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~-~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~--~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
+.-.+.|... +.||+|+||.||+|+...++ ..||||.+..... .....+.+|+.++.++ .|||||++++++
T Consensus 24 ~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~ 98 (327)
T 3lm5_A 24 ENFNNFYILTSKELGRGKFAVVRQCISKSTG--QEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVY 98 (327)
T ss_dssp HHHHHHEEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred HhhhhEEeeccceeCCCCCeEEEEEEECCCC--CEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEE
Confidence 3334455554 78999999999999976543 4899999975432 2356799999999999 569999999986
No 387
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=97.76 E-value=2.7e-05 Score=79.20 Aligned_cols=66 Identities=26% Similarity=0.424 Sum_probs=51.9
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC--CCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV--RHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~--~h~niv~l~g~~ 714 (715)
....++|...+.||+|+||.||+|+..+ ..||||++... ....+.+|.+++... +|||||++++++
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~----~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~ 100 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWRG----EKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAAD 100 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEETT----EEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEE
T ss_pred cccccceEEEeEeecCCCeEEEEEEECC----ceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEE
Confidence 3345678999999999999999999753 38999999643 234566777777655 999999999986
No 388
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=97.71 E-value=1.3e-05 Score=82.66 Aligned_cols=71 Identities=15% Similarity=0.293 Sum_probs=54.7
Q ss_pred HHHhhcCCccccccCcCCCceEEEEEECC---CCceeEEEEEEeeccCCcchHHHHHHHHHHhcCC---CCCcceEEEEe
Q 046340 641 LIKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKVLNLQHRGASKSFMAQCQALRSVR---HRNLVKIITSC 714 (715)
Q Consensus 641 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~~---~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~---h~niv~l~g~~ 714 (715)
++....+|...+.||+|+||.||+|+..+ ...+..||||++... ...++.+|+.++.+++ |+|||++++++
T Consensus 60 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~ 136 (365)
T 3e7e_A 60 FQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAH 136 (365)
T ss_dssp EECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEE
T ss_pred EEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheee
Confidence 34456778888999999999999995321 223458999999643 3567889999998887 99999999986
No 389
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=97.71 E-value=1.1e-05 Score=82.64 Aligned_cols=70 Identities=23% Similarity=0.334 Sum_probs=54.7
Q ss_pred hcCCccccccCcCCCceEEEEEECC-CCceeEEEEEEeeccC----CcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVKVLNLQH----RGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~~~~avk~l~~~~----~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
..+|...+.||+|+||.||+|+... ...+..||||+++... ....+.+.+|+.++.++ +|||||++++++
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~ 128 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAF 128 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEE
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEE
Confidence 4678888999999999999999732 1234589999996432 12345678899999999 799999999875
No 390
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=97.69 E-value=1.8e-05 Score=82.51 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=53.9
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCC--------CCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVR--------HRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~--------h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+...++ ..||||++... ....+.+.+|+.++.+++ |||||++++++
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~ 110 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGK--KFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDF 110 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCC--eEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecce
Confidence 357888899999999999999875543 48999999643 223467889999999885 78899999875
No 391
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=97.69 E-value=3.9e-05 Score=76.41 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=54.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+.... +..||||.+.... ..+.+.+|+.++.++ +|+|++++++++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~ 75 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLN--NQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFG 75 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTT--TEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCC--CcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeec
Confidence 45688889999999999999996544 3489999986432 234688999999999 899999999875
No 392
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=97.69 E-value=1.6e-05 Score=80.15 Aligned_cols=71 Identities=23% Similarity=0.394 Sum_probs=55.5
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc------chHHHHHHHHHHhcCC--CCCcceEEEE
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG------ASKSFMAQCQALRSVR--HRNLVKIITS 713 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~------~~~~~~~e~~~l~~~~--h~niv~l~g~ 713 (715)
+...++|...+.||+|+||.||+|+...++ ..||||.+...... ..+.+.+|+.++.+++ ||||++++++
T Consensus 39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~ 116 (320)
T 3a99_A 39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDN--LPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW 116 (320)
T ss_dssp -CCTTTEEEEEECSSSSSCEEEEEEETTTT--EEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEE
T ss_pred CCccCceEEEEEEeeCCCeEEEEEEECCCC--cEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEE
Confidence 444667888999999999999999976543 48999999754321 1245778999999996 5999999998
Q ss_pred e
Q 046340 714 C 714 (715)
Q Consensus 714 ~ 714 (715)
+
T Consensus 117 ~ 117 (320)
T 3a99_A 117 F 117 (320)
T ss_dssp E
T ss_pred E
Confidence 6
No 393
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=97.68 E-value=5e-05 Score=75.72 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=49.4
Q ss_pred cCCccc-cccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHH-hcCCCCCcceEEEEe
Q 046340 646 DGFSLE-NLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQAL-RSVRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~-~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l-~~~~h~niv~l~g~~ 714 (715)
++|... +.||+|+||.||+|+.... +..||||+++. ...+.+|+.++ +..+|||||++++++
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~ 80 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRT--QEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVY 80 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCC--CcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhh
Confidence 445554 7799999999999997554 34899999963 24678899998 556999999999875
No 394
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=97.68 E-value=4.7e-05 Score=77.32 Aligned_cols=64 Identities=33% Similarity=0.586 Sum_probs=48.9
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHH--hcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQAL--RSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l--~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+..+ ..||||++.... ...+..|.+++ ..++||||+++++++
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~----~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~ 76 (336)
T 3g2f_A 11 DLDNLKLLELIGRGRYGAVYKGSLDE----RPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGD 76 (336)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEETT----EEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEE
T ss_pred ChHHhheeeecccCCCeEEEEEEECC----eEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecc
Confidence 35678888999999999999998743 389999996432 34455555554 458999999999743
No 395
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=97.66 E-value=3.5e-05 Score=81.08 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=52.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC------CCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV------RHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~------~h~niv~l~g~~ 714 (715)
...|...+.||+|+||.||+|+.... +..||||+++... ...+++.+|+.++..+ .|+|||++++++
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~--~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~ 168 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKV--HQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENF 168 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTT--TEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCC--CcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeec
Confidence 45688889999999999999997654 3489999996432 2235678888888766 677999999886
No 396
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=97.63 E-value=6.1e-05 Score=78.45 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=48.5
Q ss_pred cCCccc-cccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhc-CCCCCcceEEEEe
Q 046340 646 DGFSLE-NLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRS-VRHRNLVKIITSC 714 (715)
Q Consensus 646 ~~f~~~-~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~-~~h~niv~l~g~~ 714 (715)
.+|... +.||+|+||.||+|+...++ ..||||+++. ...+.+|+.++.+ .+|||||++++++
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~--~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~ 124 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQ--EKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVY 124 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCC--CEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEE
Confidence 345443 68999999999999976543 4899999963 2467889998754 5999999999875
No 397
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=97.60 E-value=3.3e-05 Score=81.27 Aligned_cols=66 Identities=24% Similarity=0.387 Sum_probs=50.3
Q ss_pred HHhhcCCccccccCcCCCceE-EEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSV-YKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~v-y~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
.....+|...+.||+|+||.| |++.. ++ ..||||++.... ...+.+|+.++.++ +|||||++++++
T Consensus 20 ~i~~~~y~~~~~LG~G~~G~V~~~~~~-~~---~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~l~~~~ 87 (432)
T 3p23_A 20 IVGKISFCPKDVLGHGAEGTIVYRGMF-DN---RDVAVKRILPEC---FSFADREVQLLRESDEHPNVIRYFCTE 87 (432)
T ss_dssp EETTEEEEEEEEEEECGGGCEEEEEES-SS---SEEEEEEECTTT---EEECHHHHHHHHHSCCCTTBCCEEEEE
T ss_pred EEccEEEecCCeeecCcCEEEEEEEEe-CC---eEEEEEEECHHH---HHHHHHHHHHHHhccCCCCcCeEEEEE
Confidence 344556888899999999985 55553 32 389999996432 23467899999999 899999999875
No 398
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=97.58 E-value=7.1e-05 Score=83.41 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=56.0
Q ss_pred HhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeecc---CCcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 643 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQ---HRGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 643 ~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~---~~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
...++|...+.||+|+||.||+|+...++ ..||||+++.. .....+.+.+|..++..+ +||+|+++++++
T Consensus 338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~--~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~ 411 (674)
T 3pfq_A 338 MKLTDFNFLMVLGKGSFGKVMLSERKGTD--ELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF 411 (674)
T ss_dssp --CTTEEEEEESSBTTTBCEEEEEESSSC--CEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEEC
T ss_pred ccccceEEEEEEccCCCEEEEEEEECCCC--cEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEE
Confidence 34568888999999999999999987653 48999999743 233456788999999988 899999998874
No 399
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=97.55 E-value=6.3e-05 Score=74.77 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=53.5
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+.... +..||||.+..... .+++.+|+.++.+++|++++..+++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~ 73 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAA--GEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWC 73 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTT--TEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCC--CcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccc
Confidence 46788889999999999999996544 34899999865432 35689999999999999888777665
No 400
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=97.53 E-value=8.8e-05 Score=78.18 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=47.2
Q ss_pred CccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 648 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 648 f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
|...+.||+|+||+||.+...++ ..||||++... ..+.+.+|+.++.++ +|||||++++++
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~g---~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~ 78 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQG---RPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSE 78 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESSS---SEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred eeccCeEeeCCCeEEEEEEEECC---eEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEE
Confidence 34467899999999975543333 38999999643 235678999999986 899999999875
No 401
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=97.53 E-value=3.4e-05 Score=79.72 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=53.8
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCC-----------CCCcceEEEE
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVR-----------HRNLVKIITS 713 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~-----------h~niv~l~g~ 713 (715)
.++|...+.||+|+||.||+|+....+ ..||||.+.... ...+.+.+|+.++.+++ ||||++++++
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~ 94 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNN--THVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH 94 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCC--cEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHH
Confidence 457888899999999999999975443 489999996432 23456889999999876 8999999987
Q ss_pred e
Q 046340 714 C 714 (715)
Q Consensus 714 ~ 714 (715)
+
T Consensus 95 ~ 95 (373)
T 1q8y_A 95 F 95 (373)
T ss_dssp E
T ss_pred h
Confidence 5
No 402
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=97.48 E-value=7.7e-05 Score=74.12 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=50.3
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
..++|...+.||+|+||.||+|+....+ ..||||....... ...+.+|+.++.+++|++++..+++|
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~ 73 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAG--EEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWC 73 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTT--EEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCC--ceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeee
Confidence 3567888999999999999999965443 4899998764322 24588999999999999988777765
No 403
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=97.46 E-value=8.5e-05 Score=76.60 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=40.3
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC---cchHHHHHHH---HHHhcCCCCCcceEE
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQC---QALRSVRHRNLVKII 711 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~---~~~~~~~~e~---~~l~~~~h~niv~l~ 711 (715)
..+|...+.||+|+||.||+|+...++ ..||||++..... ...+.+.+|+ ..+++ +|||||+++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~ 130 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERL--EDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDR 130 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCC--ceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhc
Confidence 345778899999999999999976543 4899999986543 2234577885 45556 799988744
No 404
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=97.46 E-value=2.5e-05 Score=79.98 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=48.1
Q ss_pred hcCCccccccCcCCCceEEEEEECCCC------ceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcce
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDD------HETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLVK 709 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~------~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv~ 709 (715)
.++|...+.||+|+||.||+|+...+. .+..||||.+... +.+.+|+.++.+++|||||+
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~ 106 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVN 106 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHH
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhh
Confidence 367888899999999999999976421 1348999999743 35889999999999999997
No 405
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=97.41 E-value=0.00019 Score=72.74 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=46.5
Q ss_pred hcCCcc-ccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHH-HHhcCCCCCcceEEEEe
Q 046340 645 TDGFSL-ENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQ-ALRSVRHRNLVKIITSC 714 (715)
Q Consensus 645 ~~~f~~-~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~-~l~~~~h~niv~l~g~~ 714 (715)
.++|.. .+.||+|+||.||+|+...++ ..||||++... ....+|+. .+..+.|||||++++++
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~--~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~ 91 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTG--QKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVY 91 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCC--CEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 556776 456999999999999976543 48999999643 22333333 45667999999999875
No 406
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=97.40 E-value=9.2e-05 Score=80.08 Aligned_cols=62 Identities=15% Similarity=0.012 Sum_probs=39.2
Q ss_pred ccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcc--------hHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 649 SLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGA--------SKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 649 ~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~--------~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
...+.||+|+||.||+|++.+. .+|+|+........ .+.|.+|++++++++|||||++..|+
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~ 408 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYLDF----DVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFD 408 (540)
T ss_dssp ---------CCEEEEEEECSSC----EEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEE
T ss_pred CCCCEEeeCCCEEEEEEEECCC----eEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEE
Confidence 3457899999999999976543 78999875432111 23489999999999999999555443
No 407
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=97.27 E-value=0.00027 Score=75.13 Aligned_cols=64 Identities=23% Similarity=0.408 Sum_probs=49.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCCcc-eEEE
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRNLV-KIIT 712 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~niv-~l~g 712 (715)
.++|...+.||+|+||.||+|+....+ ..||||.+..... ..++.+|++++..++|++.+ .+..
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~--~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~ 70 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTN--EEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRW 70 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTC--CEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCC--cEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEE
Confidence 467888999999999999999975543 3899999864432 24588999999999875544 4433
No 408
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.26 E-value=0.00041 Score=58.83 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=47.6
Q ss_pred cccccCCccc-ccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCC
Q 046340 485 ELVMKGNFFQ-GNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPV 547 (715)
Q Consensus 485 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 547 (715)
.++.+++.++ ..+|..+. .+|+.|+|++|+|+.+.++.|..+++|++|+|++|+|.+.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 5677777776 23443333 4689999999999999899999999999999999998876653
No 409
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=97.25 E-value=0.0001 Score=74.78 Aligned_cols=68 Identities=19% Similarity=0.310 Sum_probs=52.2
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCC------cceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRN------LVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~n------iv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+.... .+..||||.++... ...+.+.+|+.++.+++|++ ++++++++
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~-~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~ 86 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKA-GGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWF 86 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTT-TTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCC-CCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeeccc
Confidence 35788889999999999999986322 23489999996432 23457889999998887665 89998875
No 410
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=97.17 E-value=0.0002 Score=74.16 Aligned_cols=70 Identities=24% Similarity=0.385 Sum_probs=53.6
Q ss_pred HHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCC-CCC-----cceEEEEe
Q 046340 642 IKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVR-HRN-----LVKIITSC 714 (715)
Q Consensus 642 ~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~-h~n-----iv~l~g~~ 714 (715)
....++|...+.||+|+||.||+|+...++ ..||||+++... ....++.+|+.++..++ |++ ||++++++
T Consensus 50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~ 125 (382)
T 2vx3_A 50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQ--EWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHF 125 (382)
T ss_dssp CEETTTEEEEEEEEEETTEEEEEEEETTTT--EEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEE
T ss_pred CEeeeeEEEEEEEeecCCEEEEEEEEcCCC--cEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeee
Confidence 444678999999999999999999976543 489999996431 22456788999988874 553 89988875
No 411
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=97.10 E-value=0.00089 Score=65.69 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=49.8
Q ss_pred HHHHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCc------------------chHHHHHHHHHH
Q 046340 638 YQNLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRG------------------ASKSFMAQCQAL 699 (715)
Q Consensus 638 ~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~------------------~~~~~~~e~~~l 699 (715)
...+......|...+.||+|+||.||+|+. .+ +..||||.++..... ....+.+|+.++
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~-~~--g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l 158 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYS-EK--FGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRAL 158 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEE-TT--TEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEe-CC--CCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 344455556677779999999999999998 32 348999999643210 134689999999
Q ss_pred hcCCCCCcceEE
Q 046340 700 RSVRHRNLVKII 711 (715)
Q Consensus 700 ~~~~h~niv~l~ 711 (715)
++++|++++..+
T Consensus 159 ~~l~~~~v~~~~ 170 (282)
T 1zar_A 159 QKLQGLAVPKVY 170 (282)
T ss_dssp HHTTTSSSCCEE
T ss_pred HhccCCCcCeEE
Confidence 999855555443
No 412
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=0.00021 Score=64.88 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=30.6
Q ss_pred ccCCCCCCEEeCCCC-CCCcc----CChhhcCCCCCcEEecCCCcCcccCCcc----ccCCCCCCEEEccCCcCc
Q 046340 36 IGNLSFLRVLDLKNN-SFRDE----IPQEIGYLFRLQILALHNNTFGGQIPDN----ISHCVNLESLGLGVNELV 101 (715)
Q Consensus 36 ~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~ 101 (715)
+.+-+.|++|+|++| .|.+. +.+.+..-+.|+.|+|++|+|......+ +..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344456666666654 55432 2233444455555555555554322222 223344444444444443
No 413
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.08 E-value=0.00018 Score=65.21 Aligned_cols=109 Identities=11% Similarity=0.127 Sum_probs=78.5
Q ss_pred CCeEEEEcCCC-CCCcc----cCccccCCCCCCEEeCCCCCCCccC----ChhhcCCCCCcEEecCCCcCcccC----Cc
Q 046340 16 QRVTGLRLPSL-LLQGS----LSPHIGNLSFLRVLDLKNNSFRDEI----PQEIGYLFRLQILALHNNTFGGQI----PD 82 (715)
Q Consensus 16 ~~v~~l~l~~~-~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~----~~ 82 (715)
..++.|+|+++ .|... +.+.+..-+.|+.|+|++|.|.+.- .+.+..-+.|++|+|++|.|.... .+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 68999999986 88764 4556777799999999999998643 344556789999999999998643 33
Q ss_pred cccCCCCCCEEEccCCc---CccC----ccccccCCCCCCEEEeecccc
Q 046340 83 NISHCVNLESLGLGVNE---LVGK----VPGKLGSLSKLWILSVHYNSL 124 (715)
Q Consensus 83 ~~~~l~~L~~L~L~~n~---l~~~----~~~~~~~l~~L~~L~Ls~n~l 124 (715)
++..-..|++|+|++|. +... +..++..-+.|+.|+++.|.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 45566778999998653 2221 223445567777777776653
No 414
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=97.02 E-value=0.00023 Score=72.71 Aligned_cols=68 Identities=15% Similarity=0.288 Sum_probs=52.4
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCC------cceEEEEe
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRN------LVKIITSC 714 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~n------iv~l~g~~ 714 (715)
.++|...+.||+|+||.||+|+....+ +..||||+++... ...+.+.+|+.++.+++|++ ++.+++++
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 91 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARG-KSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWF 91 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTT-TEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCC-ceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeee
Confidence 457888899999999999999975432 2489999996432 23456889999999888776 88887754
No 415
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=96.92 E-value=0.00032 Score=73.29 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=46.0
Q ss_pred hhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC---cchHHHHHHHHHHhcCCC
Q 046340 644 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR---GASKSFMAQCQALRSVRH 704 (715)
Q Consensus 644 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~---~~~~~~~~e~~~l~~~~h 704 (715)
....|...+.||+|+||.||+|+....+ ..||||++..... ...+.|.+|+.++..++|
T Consensus 76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g--~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~ 137 (413)
T 3dzo_A 76 RPRTLVRGTVLGQEDPYAYLEATDQETG--ESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG 137 (413)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred CceeEEEecccccCCCEEEEEEEecCCC--CceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence 3456777889999999999999976543 3899999973322 225679999999999987
No 416
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0061 Score=51.49 Aligned_cols=55 Identities=20% Similarity=0.071 Sum_probs=31.1
Q ss_pred EEEcCCCCCC-cccCccccCCCCCCEEeCCCCCCCccCChhhcCCCCCcEEecCCCcC
Q 046340 20 GLRLPSLLLQ-GSLSPHIGNLSFLRVLDLKNNSFRDEIPQEIGYLFRLQILALHNNTF 76 (715)
Q Consensus 20 ~l~l~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i 76 (715)
.++-++++++ ..+|..+. ++|++|+|++|.|+.+.++.|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555666665 23343221 2466666666666666566666666666666666654
No 417
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=96.42 E-value=0.0022 Score=61.96 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=41.2
Q ss_pred CccccccCcCCCceEEEEEECCCCceeE--EEEEEeeccCCc------------------------chHHHHHHHHHHhc
Q 046340 648 FSLENLIGAGSFGSVYKGILNHDDHETL--VAVKVLNLQHRG------------------------ASKSFMAQCQALRS 701 (715)
Q Consensus 648 f~~~~~lg~g~~g~vy~~~~~~~~~~~~--~avk~l~~~~~~------------------------~~~~~~~e~~~l~~ 701 (715)
|...+.||+|+||.||+|+....+. . ||||.++..... ....+.+|+.++.+
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~--~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 126 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGK--PVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLER 126 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTE--EEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCc--EeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHH
Confidence 5567889999999999999732223 6 999987533110 01257899999999
Q ss_pred CCCCCc
Q 046340 702 VRHRNL 707 (715)
Q Consensus 702 ~~h~ni 707 (715)
+.|+++
T Consensus 127 l~~~~i 132 (258)
T 1zth_A 127 AKEAGV 132 (258)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 988753
No 418
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=93.06 E-value=0.034 Score=56.34 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=31.0
Q ss_pred HHHHhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeec
Q 046340 640 NLIKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNL 683 (715)
Q Consensus 640 ~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~ 683 (715)
.+.....-|.....||+|+||.||+|.-.++ ..||||.++.
T Consensus 89 ~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G---~~vAvKi~r~ 129 (397)
T 4gyi_A 89 THAARKDVYSVGSRIGVGKESDIMIVADEKG---KQKVLKIHRL 129 (397)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEECTTC---CEEEEEEECT
T ss_pred HHHHCCCEEEecCEeeeCCceEEEEEECCCC---CEEEEEEEec
Confidence 3333344478889999999999999986543 4899999753
No 419
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=92.36 E-value=0.016 Score=60.97 Aligned_cols=58 Identities=9% Similarity=0.022 Sum_probs=15.6
Q ss_pred cccCcCCCceEEEEEECCCCceeEEEE------EEeeccC--CcchHHHHHHHHHHhcCCCCCcceEEEEe
Q 046340 652 NLIGAGSFGSVYKGILNHDDHETLVAV------KVLNLQH--RGASKSFMAQCQALRSVRHRNLVKIITSC 714 (715)
Q Consensus 652 ~~lg~g~~g~vy~~~~~~~~~~~~~av------k~l~~~~--~~~~~~~~~e~~~l~~~~h~niv~l~g~~ 714 (715)
+.+| ||.||+|.+..+.. +||| |+..... +.....|.+|+.++...+|||+|+.+++.
T Consensus 148 ~~lG---fG~v~~g~~~~~~~--~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~ 213 (463)
T 3cxl_A 148 EHVG---YTTLNREPAYKKHM--PVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFK 213 (463)
T ss_dssp TTSS---BCCC---------C--CBGGGC-----------------------------------CBCCCEE
T ss_pred ccCC---chhhhcccccccCC--chhhhhccCccccccccccccccccccccccccccccccccCCCcceE
Confidence 4565 99999999965433 7888 7775432 22335789999999999999999988874
No 420
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=89.82 E-value=0.4 Score=46.66 Aligned_cols=61 Identities=15% Similarity=0.045 Sum_probs=46.7
Q ss_pred cccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCC---CcceEEEE
Q 046340 650 LENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHR---NLVKIITS 713 (715)
Q Consensus 650 ~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~---niv~l~g~ 713 (715)
..+.++.|.++.||+.+..++ . .++||+.+.........|.+|++.|+.+.|. .+++++++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG-~--~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~ 82 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADG-T--PLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW 82 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTS-C--EEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE
T ss_pred ceeeeCCcchhheEEEEeCCC-C--eEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEe
Confidence 346789999999999998655 2 7999997644333346799999999999775 57787765
No 421
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=89.17 E-value=0.68 Score=44.23 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=49.4
Q ss_pred HhhcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCC-CCCcceEEEEe
Q 046340 643 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVR-HRNLVKIITSC 714 (715)
Q Consensus 643 ~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~-h~niv~l~g~~ 714 (715)
.....|......+.|+.+.||+....+ ..+++|+...........+.+|+.+++.+. |..+.++++++
T Consensus 11 ~~l~~~~~~~~~~g~s~~~v~~~~~~~----~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~ 79 (263)
T 3tm0_A 11 KLIEKYRCVKDTEGMSPAKVYKLVGEN----ENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFE 79 (263)
T ss_dssp HHHTTSEEEECCSCCSSSEEEEEECSS----CEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEE
T ss_pred HHhccceeEeeccCCCCCeEEEEECCC----CcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 344567777788888999999998432 279999997532222346899999999884 66777888764
No 422
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=86.81 E-value=0.32 Score=52.64 Aligned_cols=60 Identities=7% Similarity=-0.132 Sum_probs=34.5
Q ss_pred ccCcCCCceEEEEEECCCCceeEEEEEEeeccCC----------cchHHHHHHHHHHhcC-CCCCcceEEEEe
Q 046340 653 LIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR----------GASKSFMAQCQALRSV-RHRNLVKIITSC 714 (715)
Q Consensus 653 ~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~----------~~~~~~~~e~~~l~~~-~h~niv~l~g~~ 714 (715)
..+.|++|.++.++-. ..|..+|||.+..... ...++|.+|+++|+++ .|+||+++++|.
T Consensus 241 ~~~~~~~~~h~~~rr~--~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ 311 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRY--FFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHG 311 (569)
T ss_dssp C-C--------CCEEE--EECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEE
T ss_pred ccccCCcccccccccc--cccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEE
Confidence 3445555544433211 1223699999964321 1124699999999999 799999999884
No 423
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.04 E-value=4.8 Score=31.55 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=22.3
Q ss_pred eeecCCccccCCCCCCEEEcCCceeeeecCccccCCCCccEEEccC
Q 046340 324 LFGNIPSGLRNLVNLELLHLGGNQFTGQIPGSIGDLHKLQWLMLPA 369 (715)
Q Consensus 324 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 369 (715)
++.+...+|.+|++|+.+.|-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344455555555555555543 2224444555555555555543
No 424
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.50 E-value=6.7 Score=30.69 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=22.9
Q ss_pred cccccCcccCCCCCCCCEEeCCCCcccccCCccccCCCCCCEEeCC
Q 046340 492 FFQGNIPSSFSSLRGMQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 537 (715)
Q Consensus 492 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls 537 (715)
.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+++.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344444555555555555555432 344444555555555555554
No 425
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=68.79 E-value=0.81 Score=29.38 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=11.7
Q ss_pred eEehhhhHHHH-HHhhhheeeeEEecccC
Q 046340 591 KLIIPVVTVIL-LVTGMSCLIITSRRSKS 618 (715)
Q Consensus 591 ~i~~~~~~~~~-~~~~~~~~~~~~~~~~~ 618 (715)
.|+.++++.++ ++++++.+++++||++.
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 34444444333 33333344444454443
No 426
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=64.89 E-value=6.7 Score=36.83 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=41.0
Q ss_pred hcCCccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCCCC--cceEEEE
Q 046340 645 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRHRN--LVKIITS 713 (715)
Q Consensus 645 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h~n--iv~l~g~ 713 (715)
..++......+.|..+.||+....++ ..+++|..... ....+.+|+.+++.+.+.. +.+++++
T Consensus 19 ~~~~~~~~~~~gg~~~~v~~~~~~~g---~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~ 83 (264)
T 1nd4_A 19 LFGYDWAQQTIGCSDAAVFRLSAQGR---PVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDV 83 (264)
T ss_dssp TTTCEEEECSCTTSSCEEEEEECTTS---CCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEE
T ss_pred cCCCceEecccCCCCceEEEEecCCC---CeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEe
Confidence 34444433334566699999986443 26999997643 2245789999998885544 4557665
No 427
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=60.63 E-value=1.7 Score=27.85 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=11.6
Q ss_pred EehhhhHHHH-HHhhhheeeeEEecccCc
Q 046340 592 LIIPVVTVIL-LVTGMSCLIITSRRSKSK 619 (715)
Q Consensus 592 i~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 619 (715)
|+.++++.++ +++++..+++++||++++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4444444333 333333444444554433
No 428
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=56.83 E-value=1.2 Score=28.48 Aligned_cols=8 Identities=25% Similarity=0.214 Sum_probs=3.3
Q ss_pred eeEEeccc
Q 046340 610 IITSRRSK 617 (715)
Q Consensus 610 ~~~~~~~~ 617 (715)
.+|.||++
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 33444443
No 429
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=56.09 E-value=10 Score=37.85 Aligned_cols=60 Identities=7% Similarity=0.142 Sum_probs=40.5
Q ss_pred ccccCcCCCceEEEEEECCCCceeEEEEEEee--ccCC-cchHHHHHHHHHHhcCC--CCCcceEEEEe
Q 046340 651 ENLIGAGSFGSVYKGILNHDDHETLVAVKVLN--LQHR-GASKSFMAQCQALRSVR--HRNLVKIITSC 714 (715)
Q Consensus 651 ~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~--~~~~-~~~~~~~~e~~~l~~~~--h~niv~l~g~~ 714 (715)
.+.++.|.++.||+....++ .+++|+.. .... ....++.+|+.++..+. +..+++++++|
T Consensus 43 ~~~l~~G~sn~~y~v~~~~~----~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~ 107 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPGQ----TYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALC 107 (359)
T ss_dssp EEECCC-CCSCEEEEECSSC----EEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEE
T ss_pred EEEcCCcccceEEEEEECCc----eEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEEC
Confidence 45689999999999986543 68888886 4321 22346889999999886 45677888776
No 430
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=54.50 E-value=11 Score=36.24 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=44.7
Q ss_pred CccccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCCC---CCcceEEEE
Q 046340 648 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVRH---RNLVKIITS 713 (715)
Q Consensus 648 f~~~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~h---~niv~l~g~ 713 (715)
......+|.|..+.||+.++.++ + .|.||+-+.........|.+|++.|+.+.- --+++.+++
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG-~--~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~ 82 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADG-T--PLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW 82 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTS-C--EEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE
T ss_pred eEEEEecCCCCCeEEEEEEECCC-C--EEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec
Confidence 44456789999999999999776 3 799998765544444578999999887732 234455554
No 431
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=50.21 E-value=4.5 Score=20.51 Aligned_cols=10 Identities=30% Similarity=1.095 Sum_probs=7.0
Q ss_pred CCCCccccee
Q 046340 1 RHFCQWKGVT 10 (715)
Q Consensus 1 ~~~c~~~~~~ 10 (715)
|.-|+|+|+.
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3458898864
No 432
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=46.85 E-value=18 Score=36.65 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=37.5
Q ss_pred ccccCcCCCceEEEEEECCCCceeEEEEEEeeccCC-------cchHHHHHHHHHHhcCCC--C-CcceEEEE
Q 046340 651 ENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHR-------GASKSFMAQCQALRSVRH--R-NLVKIITS 713 (715)
Q Consensus 651 ~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~-------~~~~~~~~e~~~l~~~~h--~-niv~l~g~ 713 (715)
.+.+|.|..+.||+++...+ +..++||....... .....+.+|+++++.+.+ | .+.+++++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~--~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~ 105 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEH--DRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS 105 (397)
T ss_dssp EEECCSSSSEEEEEEEC------CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE
T ss_pred EEECCCCceEEEEEEEECCC--CcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE
Confidence 35789999999999975432 23799998753211 123456788888886632 2 34456554
No 433
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=28.61 E-value=5.5 Score=23.96 Aligned_cols=7 Identities=43% Similarity=0.562 Sum_probs=3.0
Q ss_pred EehhhhH
Q 046340 592 LIIPVVT 598 (715)
Q Consensus 592 i~~~~~~ 598 (715)
+++++++
T Consensus 10 IaagVvg 16 (35)
T 1iij_A 10 IIATVVG 16 (35)
T ss_dssp HHHHHHH
T ss_pred eHHHHHH
Confidence 3444444
No 434
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=22.38 E-value=1.2e+02 Score=29.27 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=40.8
Q ss_pred ccccCcCCCceEEEEEECCCCceeEEEEEEeeccCCcchHHHHHHHHHHhcCC---CCCcceEEEEe
Q 046340 651 ENLIGAGSFGSVYKGILNHDDHETLVAVKVLNLQHRGASKSFMAQCQALRSVR---HRNLVKIITSC 714 (715)
Q Consensus 651 ~~~lg~g~~g~vy~~~~~~~~~~~~~avk~l~~~~~~~~~~~~~e~~~l~~~~---h~niv~l~g~~ 714 (715)
...++.|.+..+|+....++ .+.||+.... ....|.+|++.|+.+. ..-+++.++++
T Consensus 41 ~~~l~gG~~n~~y~v~~~~~----~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~ 100 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDEVQ----TVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIG 100 (312)
T ss_dssp EEEECCSSSSEEEEEESSSC----EEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEE
T ss_pred eEEeCCccceeeeEEEECCC----eEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEe
Confidence 35689999999999985322 6889988643 2456889999988773 24566776654
Done!