Query 046343
Match_columns 633
No_of_seqs 161 out of 187
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ell_A Retinoblastoma-associat 100.0 2E-110 9E-115 895.2 23.2 359 50-523 1-411 (411)
2 2r7g_A PP110, retinoblastoma-a 100.0 1E-101 5E-106 813.8 24.8 297 53-523 1-347 (347)
3 4elj_A Retinoblastoma-associat 100.0 4E-100 1E-104 853.3 26.8 311 41-523 296-656 (656)
4 1ais_B TFB TFIIB, protein (tra 97.1 0.00086 2.9E-08 64.5 7.6 71 383-456 10-80 (200)
5 4bbr_M Transcription initiatio 97.1 0.00089 3.1E-08 70.7 8.4 71 383-456 127-197 (345)
6 1c9b_A General transcription f 97.1 0.00087 3E-08 64.9 7.2 72 382-456 5-76 (207)
7 2aze_C Retinoblastoma-associat 96.7 0.00062 2.1E-08 51.2 2.3 35 554-592 2-37 (46)
8 3k7a_M Transcription initiatio 96.4 0.0021 7.1E-08 67.7 4.8 72 382-456 126-197 (345)
9 1ais_B TFB TFIIB, protein (tra 94.9 0.053 1.8E-06 51.9 7.4 65 389-456 112-176 (200)
10 4elj_A Retinoblastoma-associat 94.3 0.057 2E-06 61.5 7.0 79 387-482 6-86 (656)
11 2qdj_A Retinoblastoma-associat 93.8 0.062 2.1E-06 56.0 5.6 66 387-455 4-73 (304)
12 1c9b_A General transcription f 93.6 0.14 4.9E-06 49.2 7.5 78 390-483 107-184 (207)
13 1zp2_A RNA polymerase II holoe 92.3 0.4 1.4E-05 47.1 8.7 72 383-457 29-101 (235)
14 2i53_A Cyclin K; cell cycle, t 91.3 0.74 2.5E-05 45.5 9.4 76 374-455 36-111 (258)
15 2ivx_A Cyclin-T2; transcriptio 90.1 1.1 3.7E-05 44.5 9.4 77 374-456 26-102 (257)
16 1jkw_A Cyclin H; cell cycle, c 89.4 0.87 3E-05 47.3 8.3 67 386-455 61-129 (323)
17 3rgf_B Cyclin-C; protein kinas 88.7 1.5 5.2E-05 44.5 9.4 75 379-456 40-115 (285)
18 2pk2_A Cyclin-T1, protein TAT; 86.0 1.3 4.5E-05 46.7 7.3 68 385-455 41-108 (358)
19 3k7a_M Transcription initiatio 77.2 0.48 1.6E-05 49.7 0.0 88 389-485 239-326 (345)
20 2b9r_A Human cyclin B1; cell c 72.0 6.9 0.00024 39.1 7.0 64 388-454 44-108 (269)
21 1zp2_A RNA polymerase II holoe 64.8 6.5 0.00022 38.4 4.9 48 394-444 143-190 (235)
22 4bbr_M Transcription initiatio 62.9 1.5 5.2E-05 46.0 0.0 76 391-469 241-316 (345)
23 3rgf_B Cyclin-C; protein kinas 60.8 8.9 0.00031 38.8 5.2 86 390-495 162-260 (285)
24 2cch_B Cyclin A2, cyclin-A; co 57.8 14 0.00047 36.6 5.9 66 386-454 43-109 (260)
25 2w96_A G1/S-specific cyclin-D1 52.7 23 0.00079 35.2 6.6 63 389-454 64-127 (271)
26 2i53_A Cyclin K; cell cycle, t 51.2 22 0.00075 34.8 6.1 50 392-444 158-211 (258)
27 2pk2_A Cyclin-T1, protein TAT; 50.3 15 0.00053 38.5 5.1 52 392-445 160-211 (358)
28 1w98_B Cyclin E, G1/S-specific 46.7 32 0.0011 34.6 6.6 63 389-453 57-120 (283)
29 1g3n_C V-cyclin; cyclin-depend 46.4 29 0.00098 34.3 6.1 66 386-454 55-121 (257)
30 2ivx_A Cyclin-T2; transcriptio 37.7 44 0.0015 32.8 5.8 52 392-445 153-204 (257)
31 2f2c_A Cyclin homolog, V-cycli 33.8 62 0.0021 31.7 6.2 63 387-452 57-120 (254)
32 3m03_A ORC6, origin recognitio 32.8 47 0.0016 28.9 4.5 59 389-452 6-70 (95)
33 4gdk_C APG16-like 1, autophagy 30.5 6.8 0.00023 28.6 -1.0 11 473-483 26-36 (36)
34 2qdj_A Retinoblastoma-associat 23.9 2.1E+02 0.0071 29.6 8.3 82 86-185 18-104 (304)
35 3g33_B CCND3 protein; Ser/Thr 22.8 1E+02 0.0035 31.4 5.7 67 385-454 74-141 (306)
36 2jxx_A Nfatc2-interacting prot 21.7 44 0.0015 28.9 2.3 36 444-479 45-96 (97)
No 1
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=100.00 E-value=2.5e-110 Score=895.21 Aligned_cols=359 Identities=26% Similarity=0.461 Sum_probs=268.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcccc-----CC-CCCC-------------------------hHHHHHHHHHHHHHHHHH
Q 046343 50 TAMTTAKWLRTIICPLPSKPSADLQ-----GA-NLMD-------------------------NIWAEQRRLEALKLNYKV 98 (633)
Q Consensus 50 ~Am~s~~~L~~~la~l~~~PS~~l~-----~~-~~~d-------------------------~~~a~qR~~~a~~LYYkv 98 (633)
.||+|++|||++|+|++++||++|. |. ++++ ..++++|+++|++||||+
T Consensus 1 ~~~~s~~~L~~~l~~~~~~PS~~L~~~f~sC~~dp~~~I~~rv~~l~~~F~~~~~~~~~~~~~~~a~~R~~la~~LYY~~ 80 (411)
T 4ell_A 1 GEFNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRV 80 (411)
T ss_dssp ------CHHHHHHHHSCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999943 22 1111 126899999999999999
Q ss_pred HHHHHHHHHHhhccCchHHH-----HHHHHHHHHHHHHHHHhCC---------CccchHHHHHhhCCCcchhhchhhhhh
Q 046343 99 LETMCTAEAQVLHAKNLTSL-----FHRCMLACSAELVLATHKT---------VTMLFLAVLERIGITAFNLSKVIQSFI 164 (633)
Q Consensus 99 LE~Il~~E~krl~~~~ls~L-----FHrsLlACclEiVl~sy~~---------~~~~FPwILe~~~l~aFdf~KVIE~fI 164 (633)
||+||.+|++|+++.||+.| ||+||||||+|||+|+|++ .++.|||||++|+|+|||||||||+||
T Consensus 81 LE~Il~~E~~rl~~~~~s~LL~~~~Fh~sLlACclEvVl~~y~~~~~~~~~~~~~~~FPwiL~~~~i~afdf~KVIE~fv 160 (411)
T 4ell_A 81 MESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFI 160 (411)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------CCTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchHHHHhhhHHHHHHHHHHHHHHHHHHhccccccccccccCcCChHHHHhcCCChhhhhhhhHHhh
Confidence 99999999999999999998 9999999999999999986 359999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhhhcCCCCchhHhHhhhCCcc--hhhhccCcccccccccccchhhhccccCCCCCCC
Q 046343 165 RHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPAL--SAEINLGFTDILFQDSQDSWEEFTSILTVPPTDS 242 (633)
Q Consensus 165 Rae~~LpRelvKHLn~IEEqILEslAW~~~SpLw~~L~~a~p~~--~~ev~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 242 (633)
|||++||||||||||+|||||||+|||++|||||++|+.+++.. .+++.++
T Consensus 161 r~e~~L~r~lvkHL~~iEe~iLEslaW~~~S~Lw~~l~~~~~~~~~~~~~~~~--------------------------- 213 (411)
T 4ell_A 161 KAEGNLTREMIKHLERCEHRIMESFAWLSDSPLFDLIKQSKDREGPTDHLESA--------------------------- 213 (411)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHTGGGSTTCHHHHHHHHC----------------------------------------
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhccccCCcccccCCc---------------------------
Confidence 99999999999999999999999999999999999998764321 1111110
Q ss_pred CCccccCCCCCCCCCCccccchhhcCCCCchhhhhhhccccCCCCCCCcccccccCCCcccccccccccccCCccccccc
Q 046343 243 PTRQHYENLPWWKEPFTEVDSIFLLIPMPSLDAIAMHINFSSGGLSPVHSLHKHETSPVCSIFNFQFYANCYGELVTDDY 322 (633)
Q Consensus 243 p~~~~~~~~~~~k~~~~~~~~~~l~~~~~s~~~ia~~~~~s~~~l~p~ps~~~~~ssp~~~~~~~~~~~~~~p~~~~~~~ 322 (633)
++++. ..+.++ ++.+.+.||..+. +++.|+++.
T Consensus 214 ----------------------------~~~~~-p~~~~~---------t~~~~~~SP~~~~-~~~~~~~~~-------- 246 (411)
T 4ell_A 214 ----------------------------CPLNL-PLQNNH---------TAADMYLEPVRAP-KKKGSTTRV-------- 246 (411)
T ss_dssp ---------------------------------------C---------CHHHHHHCCC---------------------
T ss_pred ----------------------------ccccc-cccCCc---------cchhcccCCCCcc-cccccCCcc--------
Confidence 00000 001110 0112222332211 122222111
Q ss_pred ccchhccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhCCC-hH
Q 046343 323 RSVLVERNNFTSLVKDCLLGLNNLKSKPLPPPLYPTRSNPGGGGEPCAETGINICFCKINKLAAVRINAMVERLQLS-QQ 401 (633)
Q Consensus 323 ~~~~~~~~~~~sP~k~~~~~~~~~~~k~~~~~l~p~~~~p~~~~~~~~~t~L~lFfRKVy~LAa~RL~dLC~rL~ls-~e 401 (633)
.++++|. +..+.|++++++++.++|++||||||+||++||++||++|+++ ++
T Consensus 247 -------~~~~~~~--------------------~~~~~~~~~~~~~~~~sl~lFfrKvy~LAa~Rl~~LC~~L~~~~~~ 299 (411)
T 4ell_A 247 -------NSTANAE--------------------TQATSAFQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPE 299 (411)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred -------ccccCcc--------------------ccCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 0111111 0011122344566788999999999999999999999999986 48
Q ss_pred HHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHhcCCCCCCcceeeec----cccceee
Q 046343 402 IRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYGKQPQCKPQVFRSVF----DHVDIIT 477 (633)
Q Consensus 402 l~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR~QPQa~s~VyRsVl----ergDII~ 477 (633)
++++||||| ||+|+|+|+||+|||||||||||||+||||++++++|+|||++||+||||+++|||+|+ ++||||+
T Consensus 300 l~~~IWt~f-e~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~qPqa~~~vyr~Vli~~g~~gDII~ 378 (411)
T 4ell_A 300 LEHIIWTLF-QHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIV 378 (411)
T ss_dssp HHHHHHHHH-HHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTTSTTCCTHHHHSEECSSSCEECHHH
T ss_pred HHHHHHHHH-HHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhCcCCCCceeEEEEeCCCCcccHHH
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999 7899999
Q ss_pred hhhhcchhhhHHHHHHhcCCCcccccCCCcccCCCCCCCCCCCCCC
Q 046343 478 FYNKIFAPTVKPLLVELGPVGTAMKTNRDSEVNHNNDASVFPALPD 523 (633)
Q Consensus 478 FYN~VFvp~mK~F~l~~~~~~~~~~~~~~~~~~~~~~lSP~P~~~~ 523 (633)
|||+||||+||+|+++|+++ + .|+|||+|++|.
T Consensus 379 FYN~Vfv~~mK~f~l~~~~~----------~---~~~lsp~p~~~~ 411 (411)
T 4ell_A 379 FYNSVFMQRLKTNILQYAST----------R---PPTLAPIPHIPR 411 (411)
T ss_dssp HHHHTHHHHHHHHHHGGGSS----------S---CCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHhcCC----------C---CCCCCCCCCCCC
Confidence 99999999999999999976 1 489999999873
No 2
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=100.00 E-value=1.4e-101 Score=813.80 Aligned_cols=297 Identities=30% Similarity=0.559 Sum_probs=268.5
Q ss_pred HHHHHHHHHhCCCCCCCCcccc-----CC-CCCC-------------------------hHHHHHHHHHHHHHHHHHHHH
Q 046343 53 TTAKWLRTIICPLPSKPSADLQ-----GA-NLMD-------------------------NIWAEQRRLEALKLNYKVLET 101 (633)
Q Consensus 53 ~s~~~L~~~la~l~~~PS~~l~-----~~-~~~d-------------------------~~~a~qR~~~a~~LYYkvLE~ 101 (633)
+|++|||++++|++++||++|. |. ++++ ..++++|+.+|++|||++||+
T Consensus 1 ~~~~~L~~~~~~~~~~Ps~~L~~~~~~C~~~p~~~i~~rv~~l~~~f~~~~~~~~~~~~~~~~~~R~~~a~~LYY~vLe~ 80 (347)
T 2r7g_A 1 NTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRVMES 80 (347)
T ss_dssp CCHHHHHHHHHHSCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhcCCCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999943 22 1111 136799999999999999999
Q ss_pred HHHHHHHhhccCchHHH-----HHHHHHHHHHHHHHHHhCC---------CccchHHHHHhhCCCcchhhchhhhhhhcC
Q 046343 102 MCTAEAQVLHAKNLTSL-----FHRCMLACSAELVLATHKT---------VTMLFLAVLERIGITAFNLSKVIQSFIRHE 167 (633)
Q Consensus 102 Il~~E~krl~~~~ls~L-----FHrsLlACclEiVl~sy~~---------~~~~FPwILe~~~l~aFdf~KVIE~fIRae 167 (633)
||.+|.+|++..|++.| ||+||||||+|+|+++|++ .++.|||||++|||+|||||||||+|||||
T Consensus 81 Il~~E~~r~~~~~~s~LL~~~~Fh~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e 160 (347)
T 2r7g_A 81 MLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAE 160 (347)
T ss_dssp HHHHHHHHHTSCCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCcchHHHHhchHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhcc
Confidence 99999999999999998 9999999999999999963 259999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhcCCCCchhHhHhhhCCcchhhhccCcccccccccccchhhhccccCCCCCCCCCccc
Q 046343 168 ESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEINLGFTDILFQDSQDSWEEFTSILTVPPTDSPTRQH 247 (633)
Q Consensus 168 ~~LpRelvKHLn~IEEqILEslAW~~~SpLw~~L~~a~p~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~ 247 (633)
++||||||||||+|||+|||+|||++|||||+.|+.+++
T Consensus 161 ~~LprelvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~----------------------------------------- 199 (347)
T 2r7g_A 161 GNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKD----------------------------------------- 199 (347)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC-----------------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHhccc-----------------------------------------
Confidence 999999999999999999999999999999999864210
Q ss_pred cCCCCCCCCCCccccchhhcCCCCchhhhhhhccccCCCCCCCcccccccCCCcccccccccccccCCcccccccccchh
Q 046343 248 YENLPWWKEPFTEVDSIFLLIPMPSLDAIAMHINFSSGGLSPVHSLHKHETSPVCSIFNFQFYANCYGELVTDDYRSVLV 327 (633)
Q Consensus 248 ~~~~~~~k~~~~~~~~~~l~~~~~s~~~ia~~~~~s~~~l~p~ps~~~~~ssp~~~~~~~~~~~~~~p~~~~~~~~~~~~ 327 (633)
.
T Consensus 200 ------------------------------------------~------------------------------------- 200 (347)
T 2r7g_A 200 ------------------------------------------R------------------------------------- 200 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------c-------------------------------------
Confidence 0
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHHH
Q 046343 328 ERNNFTSLVKDCLLGLNNLKSKPLPPPLYPTRSNPGGGGEPCAETGINICFCKINKLAAVRINAMVERLQLS-QQIRESV 406 (633)
Q Consensus 328 ~~~~~~sP~k~~~~~~~~~~~k~~~~~l~p~~~~p~~~~~~~~~t~L~lFfRKVy~LAa~RL~dLC~rL~ls-~el~~kI 406 (633)
+ | +++++++||||||+||++||++||++|+++ ++++++|
T Consensus 201 -----------------------------~-------g----~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~i 240 (347)
T 2r7g_A 201 -----------------------------E-------G----KSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHII 240 (347)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred -----------------------------C-------C----cccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 0 0 135799999999999999999999999875 4799999
Q ss_pred hhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHhcCCCCCCcceeeec----cccceeehhhhc
Q 046343 407 YCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYGKQPQCKPQVFRSVF----DHVDIITFYNKI 482 (633)
Q Consensus 407 Wt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR~QPQa~s~VyRsVl----ergDII~FYN~V 482 (633)
||+| ||+|+|+|+||+|||||||||||||++|||++.++||++||++||+|||++++|||+|+ ++||||+|||+|
T Consensus 241 Wt~f-e~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr~qpq~~~~vyr~V~i~~~~~gDII~FYN~v 319 (347)
T 2r7g_A 241 WTLF-QHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSV 319 (347)
T ss_dssp HHHH-HHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTSTTCCTHHHHSEECSSSCEECHHHHHHHT
T ss_pred HHHH-HHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcccccchheeeeeccCCCcCchHHhhhHH
Confidence 9999 99999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred chhhhHHHHHHhcCCCcccccCCCcccCCCCCCCCCCCCCC
Q 046343 483 FAPTVKPLLVELGPVGTAMKTNRDSEVNHNNDASVFPALPD 523 (633)
Q Consensus 483 Fvp~mK~F~l~~~~~~~~~~~~~~~~~~~~~~lSP~P~~~~ 523 (633)
|||+||+|+++|++.+ .|++||||++|.
T Consensus 320 fvp~mK~f~~~~~~~~-------------~~~lSp~P~~p~ 347 (347)
T 2r7g_A 320 FMQRLKTNILQYASTR-------------PPTLSPIPHIPR 347 (347)
T ss_dssp HHHHHHHHHHHTTSSS-------------CCCCCCCCCC--
T ss_pred HHHHHHHHHHHhCCCC-------------CCCCCCCCCCCC
Confidence 9999999999999651 379999999873
No 3
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-100 Score=853.27 Aligned_cols=311 Identities=30% Similarity=0.541 Sum_probs=267.9
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCCCcccc-----CC-CCCC-------------------------hHHHHHHHH
Q 046343 41 SKMVVTPVSTAMTTAKWLRTIICPLPSKPSADLQ-----GA-NLMD-------------------------NIWAEQRRL 89 (633)
Q Consensus 41 ~~~~~TPVs~Am~s~~~L~~~la~l~~~PS~~l~-----~~-~~~d-------------------------~~~a~qR~~ 89 (633)
..+++||||+||++++|||++|+|++++||++|. |. ++.+ ..+|+||++
T Consensus 296 ~~p~~TPVs~A~~si~~L~~~l~~~~~~PS~~L~~~f~~C~~dp~~~I~~rv~~l~~~F~~~~~~~~g~~~~~~a~~R~~ 375 (656)
T 4elj_A 296 VIPPHTPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGQGCVEIGSQRYK 375 (656)
T ss_dssp ---CCCHHHHHHHHHHHHHHHTTTCCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHH
Confidence 3567899999999999999999999999999843 22 1111 136899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchHHH-----HHHHHHHHHHHHHHHHhCCC---------ccchHHHHHhhCCCcch
Q 046343 90 EALKLNYKVLETMCTAEAQVLHAKNLTSL-----FHRCMLACSAELVLATHKTV---------TMLFLAVLERIGITAFN 155 (633)
Q Consensus 90 ~a~~LYYkvLE~Il~~E~krl~~~~ls~L-----FHrsLlACclEiVl~sy~~~---------~~~FPwILe~~~l~aFd 155 (633)
+|++||||+||+||.+|.+|+++.|+|.| |||||||||+|||+|+|+++ ++.|||||++|+|+|||
T Consensus 376 la~~LYYkvLE~Il~~E~~rl~~~~ls~LL~~~~Fh~sLlACclEvVl~~y~~~~~~~~~~~~~~~FPwiL~~~~i~afd 455 (656)
T 4elj_A 376 LGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFD 455 (656)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHCHHHHHHHHHHHHHHHHHHHSCCCC----CCCSSSTTHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHHhcCCcHHH
Confidence 99999999999999999999999999998 99999999999999999873 59999999999999999
Q ss_pred hhchhhhhhhcCCCCCHHHHHHHHHHHHHHHHhhhcCCCCchhHhHhhhCCcchhhhccCcccccccccccchhhhcccc
Q 046343 156 LSKVIQSFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEINLGFTDILFQDSQDSWEEFTSIL 235 (633)
Q Consensus 156 f~KVIE~fIRae~~LpRelvKHLn~IEEqILEslAW~~~SpLw~~L~~a~p~~~~ev~~~~~~~~~~~~~~~~~~~~~~~ 235 (633)
||||||+|||||++||||||||||+|||||||+|||++|||||+.|+.+++.
T Consensus 456 f~KVIE~fvr~e~~L~r~lvkHL~~iEe~iLEslaW~~~S~L~~~l~~~~~~---------------------------- 507 (656)
T 4elj_A 456 FYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDR---------------------------- 507 (656)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGGSSSCTHHHHHHTTSCC----------------------------
T ss_pred HHhhhhhheeccCCCCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHhcccc----------------------------
Confidence 9999999999999999999999999999999999999999999998642110
Q ss_pred CCCCCCCCCccccCCCCCCCCCCccccchhhcCCCCchhhhhhhccccCCCCCCCcccccccCCCcccccccccccccCC
Q 046343 236 TVPPTDSPTRQHYENLPWWKEPFTEVDSIFLLIPMPSLDAIAMHINFSSGGLSPVHSLHKHETSPVCSIFNFQFYANCYG 315 (633)
Q Consensus 236 ~~p~~~~p~~~~~~~~~~~k~~~~~~~~~~l~~~~~s~~~ia~~~~~s~~~l~p~ps~~~~~ssp~~~~~~~~~~~~~~p 315 (633)
. +
T Consensus 508 ------------------------------------------------------~----------g-------------- 509 (656)
T 4elj_A 508 ------------------------------------------------------E----------G-------------- 509 (656)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------c----------c--------------
Confidence 0 0
Q ss_pred cccccccccchhccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 046343 316 ELVTDDYRSVLVERNNFTSLVKDCLLGLNNLKSKPLPPPLYPTRSNPGGGGEPCAETGINICFCKINKLAAVRINAMVER 395 (633)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~sP~k~~~~~~~~~~~k~~~~~l~p~~~~p~~~~~~~~~t~L~lFfRKVy~LAa~RL~dLC~r 395 (633)
+ .+++++++||||||+||++||++||++
T Consensus 510 -----------------------------------------~-----------~~s~sl~iffrKvy~LAa~Rl~~LC~~ 537 (656)
T 4elj_A 510 -----------------------------------------P-----------LKSTSLSLFYKKVYRLAYLRLNTLCER 537 (656)
T ss_dssp ------------------------------------------------------CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------C-----------ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 023479999999999999999999999
Q ss_pred hCCC-hHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHhcCCCCCCcceeeec----
Q 046343 396 LQLS-QQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYGKQPQCKPQVFRSVF---- 470 (633)
Q Consensus 396 L~ls-~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR~QPQa~s~VyRsVl---- 470 (633)
|+++ ++++++|||+| ||+|.|+|+||+|||||||||||||+||||++.+++|++||++||+|||++++|||+|+
T Consensus 538 L~~~~~~i~~~IWt~f-e~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~qpq~~~~vyr~V~i~~g 616 (656)
T 4elj_A 538 LLSEHPELEHIIWTLF-QHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEE 616 (656)
T ss_dssp HCTTCTHHHHHHHHHH-HHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTSTTCCTHHHHSEEEETT
T ss_pred hccCchHHHHHHHHHH-HHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHhCCCCCCceeEEEEecCC
Confidence 9875 68999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeehhhhcchhhhHHHHHHhcCCCcccccCCCcccCCCCCCCCCCCCCC
Q 046343 471 DHVDIITFYNKIFAPTVKPLLVELGPVGTAMKTNRDSEVNHNNDASVFPALPD 523 (633)
Q Consensus 471 ergDII~FYN~VFvp~mK~F~l~~~~~~~~~~~~~~~~~~~~~~lSP~P~~~~ 523 (633)
++||||+|||+||||+||+|+++|+++ + +|+|||||++|.
T Consensus 617 ~~~DII~FYN~Vfvp~~K~f~l~~~~~----------~---~~~lsp~p~~~~ 656 (656)
T 4elj_A 617 EYDSIIVFYNSVFMQRLKTNILQYAST----------R---PPTLAPIPHIPR 656 (656)
T ss_dssp EEECHHHHHHHTHHHHHTTTGGGC-----------------------------
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhcCC----------C---CCCCCCCCCCCC
Confidence 899999999999999999999999975 1 589999999873
No 4
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.12 E-value=0.00086 Score=64.52 Aligned_cols=71 Identities=17% Similarity=0.359 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHh
Q 046343 383 KLAAVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYG 456 (633)
Q Consensus 383 ~LAa~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR 456 (633)
.-|...|+++|.+|+|++++.+....+| +..+.+ .++++|-.+.+...|+|..||..+..++++||....+
T Consensus 10 ~~a~~~I~~~~~~L~L~~~v~~~A~~l~-~~~~~~--~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~ 80 (200)
T 1ais_B 10 AFALSELDRITAQLKLPRHVEEEAARLY-REAVRK--GLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR 80 (200)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHH-HHHHTT--TTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHhC--CCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC
Confidence 4588889999999999999989888888 666544 6889999999999999999999999999999998875
No 5
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=97.12 E-value=0.00089 Score=70.71 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHh
Q 046343 383 KLAAVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYG 456 (633)
Q Consensus 383 ~LAa~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR 456 (633)
.-|...|+++|.+|+|++.+++....+| +.... -.++++|..+.|+.+|+|+.||..+..+||+||....+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~ly-k~a~~--~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~ 197 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAY-KLCHD--EKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH 197 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHTT--CTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHh--cCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC
Confidence 4578899999999999999999988888 65543 47999999999999999999999999999999999886
No 6
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.07 E-value=0.00087 Score=64.89 Aligned_cols=72 Identities=25% Similarity=0.267 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHh
Q 046343 382 NKLAAVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYG 456 (633)
Q Consensus 382 y~LAa~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR 456 (633)
+.-|...|+++|.+|+|++++....-..| +..+.+ ..+++|+++.|..+|+|+.||+.....+++||...++
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~-~r~~~~--~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~ 76 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLF-KQVYEQ--KSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR 76 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHH--TCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHhc--CCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC
Confidence 34588899999999999999888888888 665543 5689999999999999999999999999999987765
No 7
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=96.74 E-value=0.00062 Score=51.17 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=28.7
Q ss_pred ceEEEEeCCcccCCCCccchHHHHHHhhc-CcCcccceec
Q 046343 554 KSYYACVGESTHAYSPFKDLTDINHRLNS-NRRVRGALNF 592 (633)
Q Consensus 554 ~~ly~~~gest~a~SPsKdL~~IN~~i~~-~~~~kr~l~~ 592 (633)
++| +.+||| |+-+.++|.||+|+++ .+..||.+.-
T Consensus 2 r~L-vSiGEs---Fg~~~rFQKINqMvnss~r~~KR~~d~ 37 (46)
T 2aze_C 2 RIL-VSIGES---FGTSEKFQKINQMVCNSDRVLKRSAEG 37 (46)
T ss_dssp EEE-EESSCT---TTHHHHHHHHHHHHHCCTTCCCCCSTT
T ss_pred cEE-eehhhh---hCchHHHHHHHHHHhhhhHhhhhhccC
Confidence 455 789998 7889999999999999 5677887653
No 8
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0021 Score=67.66 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHh
Q 046343 382 NKLAAVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYG 456 (633)
Q Consensus 382 y~LAa~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR 456 (633)
+.-|...|+++|++|+|++.+.+....+| +..+. -.++++|-++.|+.+|+|+.||..+..++|+||....+
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~ly-k~~~~--~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~ 197 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAY-KLCHD--EKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH 197 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHH-HHHSS--SCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHh--cCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC
Confidence 45688999999999999999999988888 66544 36899999999999999999999999999999987765
No 9
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=94.88 E-value=0.053 Score=51.93 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=57.7
Q ss_pred HHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHh
Q 046343 389 INAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYG 456 (633)
Q Consensus 389 L~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR 456 (633)
|..+|.+|++++++++..|.++ +..+ +.+++.+|.-..|.-.|||..|++.+..++.+||-..-+
T Consensus 112 i~r~~~~L~l~~~v~~~A~~i~-~~~~--~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~ 176 (200)
T 1ais_B 112 VNKFADELGLSEKVRRRAIEIL-DEAY--KRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVAR 176 (200)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH-HHHH--HTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHH-HHHH--HcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC
Confidence 5568899999999999999999 7776 467899999999999999999999999999999977654
No 10
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=94.27 E-value=0.057 Score=61.50 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCChHHHHHHhhhcchhhhhccccccc--ccchhHHHHHHHHHhhhhccCccCHHHHHHHHhcCCCCCCc
Q 046343 387 VRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFF--NCHIDQIILCCFYGVAKISQLNLTFKEIIYNYGKQPQCKPQ 464 (633)
Q Consensus 387 ~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~--dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR~QPQa~s~ 464 (633)
.|..+||..|++++..+++.|..| +.+-.+...|.+ +---.+.+-|++|+.|++...-+|+.+|.++-+-
T Consensus 6 ~~f~~lC~~Ln~d~~~~~~Aw~~~-~~~~~~~~~l~~tleg~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~l------- 77 (656)
T 4elj_A 6 PDFTALCQKLKIPDHVRERAWLTW-EKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEI------- 77 (656)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH-HHHHHHCSCC-----CCHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTC-------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH-HHHHhccccccCCcccchHHhhhhhheeeeeccCCeeeHHHHHHHhcC-------
Confidence 588999999999999999999999 776643323221 1233467888888888888888999999999863
Q ss_pred ceeeeccccceeehhhhc
Q 046343 465 VFRSVFDHVDIITFYNKI 482 (633)
Q Consensus 465 VyRsVlergDII~FYN~V 482 (633)
.||+|++++
T Consensus 78 ---------sl~~FF~ki 86 (656)
T 4elj_A 78 ---------SVHKFFNLL 86 (656)
T ss_dssp ---------CHHHHHHHH
T ss_pred ---------CHHHHHHHh
Confidence 678888753
No 11
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=93.80 E-value=0.062 Score=56.02 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCChHHHHHHhhhcchhhhhc-c--cccccccchhHHHHHHHHHhhhhccC-ccCHHHHHHHH
Q 046343 387 VRINAMVERLQLSQQIRESVYCLCPKRTLNQ-R--TSLFFNCHIDQIILCCFYGVAKISQL-NLTFKEIIYNY 455 (633)
Q Consensus 387 ~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~-~--t~Lm~dRHLDQIiLCaiY~icKV~k~-~~tFk~Ii~~Y 455 (633)
.|..+||+.|++++.++++.|..| +.+-.. . ..+.- --....+||+|+.|...+. -+|+.+|.++-
T Consensus 4 ~rF~~lC~~Lnld~~~~~~Aw~~~-~~~~~~~~~~~~~~~--~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 4 PDFTALCQKLKIPDHVRERAWLTW-EKVSSVDGVLGGYIQ--KKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH-HHHHC------------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHH-HHHhccccccCCCcc--chHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 588999999999999999999999 775432 1 01111 1334578889999975443 58888877664
No 12
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=93.63 E-value=0.14 Score=49.21 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=64.2
Q ss_pred HHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHhcCCCCCCcceeee
Q 046343 390 NAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYGKQPQCKPQVFRSV 469 (633)
Q Consensus 390 ~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR~QPQa~s~VyRsV 469 (633)
..+|..|++++++++..|.++ +.++. ++|+.+|.--+|...|||..|++.+..++-++|-+.-+-
T Consensus 107 ~r~~~~l~l~~~~~~~A~~i~-~~~~~--~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v------------ 171 (207)
T 1c9b_A 107 SRFCSNLCLPKQVQMAATHIA-RKAVE--LDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV------------ 171 (207)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-HHHHH--TTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTC------------
T ss_pred HHHHHHCCCCHHHHHHHHHHH-HHHHH--cCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCC------------
Confidence 467889999999999999999 87764 789999999999999999999999999999998655431
Q ss_pred ccccceeehhhhcc
Q 046343 470 FDHVDIITFYNKIF 483 (633)
Q Consensus 470 lergDII~FYN~VF 483 (633)
..++|-+-|+.++
T Consensus 172 -~~~tI~~~~~~l~ 184 (207)
T 1c9b_A 172 -ADVTIRQSYRLIY 184 (207)
T ss_dssp -CHHHHHHHHHHHG
T ss_pred -CHHHHHHHHHHHH
Confidence 2356666676654
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=92.30 E-value=0.4 Score=47.15 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccc-cchhHHHHHHHHHhhhhccCccCHHHHHHHHhc
Q 046343 383 KLAAVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFN-CHIDQIILCCFYGVAKISQLNLTFKEIIYNYGK 457 (633)
Q Consensus 383 ~LAa~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~d-RHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR~ 457 (633)
..+..-|.++|.+|+|+++.....-..| +..+.. ..+++ +++.-|.++|+|+-||+.....+.+||+...++
T Consensus 29 ~~~~~~i~~v~~~l~L~~~t~~~A~~~~-~Rf~~~--~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~ 101 (235)
T 1zp2_A 29 IYQWKVVQTFGDRLRLRQRVLATAIVLL-RRYMLK--KNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEAND 101 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHH--CCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHh--cccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Confidence 3456779999999999998877766777 554543 34566 999999999999999999989999999987654
No 14
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=91.27 E-value=0.74 Score=45.53 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHH
Q 046343 374 INICFCKINKLAAVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIY 453 (633)
Q Consensus 374 L~lFfRKVy~LAa~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~ 453 (633)
+..-.|+ .+..-|.++|.+|+++++.....-..| +..+..+ .++++++.-|.++|+|+-||+.....+.+||+.
T Consensus 36 ~e~~~R~---~~~~~i~~v~~~l~l~~~t~~~A~~~~-dRf~~~~--~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~ 109 (258)
T 2i53_A 36 TEARYRR---EGARFIFDVGTRLGLHYDTLATGIIYF-HRFYMFH--SFKQFPRYVTGACCLFLAGKVEETPKKCKDIIK 109 (258)
T ss_dssp HHHHHHH---HHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHTTTS--CTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHcCCChHHHHHHHHHH-HHHHHhC--ChhhcCHHHHHHHHHHHHHccccccccHHHHHH
Confidence 4444444 346778999999999998877777777 5555433 567899988889999999999988899999997
Q ss_pred HH
Q 046343 454 NY 455 (633)
Q Consensus 454 ~Y 455 (633)
.+
T Consensus 110 ~~ 111 (258)
T 2i53_A 110 TA 111 (258)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 15
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=90.12 E-value=1.1 Score=44.46 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHH
Q 046343 374 INICFCKINKLAAVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIY 453 (633)
Q Consensus 374 L~lFfRKVy~LAa~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~ 453 (633)
...-+|+. +..-|.++|.+|+++++.....-..| +..+.. ..++++|+--+.++|+|+-||+.....+.+||+.
T Consensus 26 ~e~~~R~~---~~~~i~~v~~~l~l~~~t~~~A~~~~-dRf~~~--~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~ 99 (257)
T 2ivx_A 26 KELSCRQQ---AANLIQEMGQRLNVSQLTINTAIVYM-HRFYMH--HSFTKFNKNIISSTALFLAAKVEEQARKLEHVIK 99 (257)
T ss_dssp HHHHHHHH---HHHHHHHHHHHTTCCHHHHHHHHHHH-HHHTTT--SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHhh--CChhhhCHHHHHHHHHHHHhccccCCcCHHHHHH
Confidence 33444443 56779999999999998877777777 555543 3578899999999999999999988999999987
Q ss_pred HHh
Q 046343 454 NYG 456 (633)
Q Consensus 454 ~YR 456 (633)
.++
T Consensus 100 ~~~ 102 (257)
T 2ivx_A 100 VAH 102 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 16
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=89.37 E-value=0.87 Score=47.25 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhC--CChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHH
Q 046343 386 AVRINAMVERLQ--LSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNY 455 (633)
Q Consensus 386 a~RL~dLC~rL~--ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~Y 455 (633)
..-|.++|.+|+ |+++...-.-..| +..+.. ..++++|+--|.++|+|+-||+....++.++|+...
T Consensus 61 ~~~I~ev~~~l~~~Lp~~t~~tA~~~~-~RF~~~--~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~ 129 (323)
T 1jkw_A 61 EKRLLEFCSVFKPAMPRSVVGTACMYF-KRFYLN--NSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHHHH-HHHGGG--SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH-HHHhhh--CChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHh
Confidence 456889999999 9998877666666 544543 357789999999999999999999889999997643
No 17
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=88.71 E-value=1.5 Score=44.48 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCcc-CHHHHHHHHh
Q 046343 379 CKINKLAAVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNL-TFKEIIYNYG 456 (633)
Q Consensus 379 RKVy~LAa~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~-tFk~Ii~~YR 456 (633)
+|+-..+..=|.++|.+|+|+++.....=..| +..+.. ..++++|+.-|.+.|+|+-||+..... +++||+..++
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~-~RF~~~--~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~ 115 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYF-KRFYAR--YSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAAT 115 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHH--SCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHHHh--CCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 34445566778999999999998866666666 444432 457889999999999999999988765 7999988664
No 18
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=86.01 E-value=1.3 Score=46.68 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHH
Q 046343 385 AAVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNY 455 (633)
Q Consensus 385 Aa~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~Y 455 (633)
+..-|.++|.+|+|+++.....-..| +..+..+ .++.+|+--|.++|+|+-||+.....+.+||+..+
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~-dRFl~~~--sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~ 108 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYM-HRFYMIQ--SFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHH-HHHTTTS--CTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHhcC--CcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 66779999999999999877777777 5555433 57889999999999999999998899999998654
No 19
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=77.17 E-value=0.48 Score=49.65 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHhcCCCCCCcceee
Q 046343 389 INAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYGKQPQCKPQVFRS 468 (633)
Q Consensus 389 L~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR~QPQa~s~VyRs 468 (633)
|..+|.+|+++.++....|.++ +.++ .++|+-+|.---|...|||..|++.+..++=++|-+.-.--...-...|+
T Consensus 239 i~Rf~~~L~l~~~v~~~A~~i~-~~~~--~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~yk- 314 (345)
T 3k7a_M 239 IPRFCSHLGLPMQVTTSAEYTA-KKCK--EIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYK- 314 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCCHHHHHHHHHHH-HHHH--HhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH-
Confidence 3467999999999999999999 7765 46799999999999999999999988877777775554433333333333
Q ss_pred eccccceeehhhhcchh
Q 046343 469 VFDHVDIITFYNKIFAP 485 (633)
Q Consensus 469 VlergDII~FYN~VFvp 485 (633)
+|..|++++|-+
T Consensus 315 -----el~~~~~~l~~~ 326 (345)
T 3k7a_M 315 -----ILYEHRDKLVDP 326 (345)
T ss_dssp -----------------
T ss_pred -----HHHHHHHhhCCH
Confidence 566666666655
No 20
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=72.04 E-value=6.9 Score=39.14 Aligned_cols=64 Identities=6% Similarity=0.094 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccC-ccCHHHHHHH
Q 046343 388 RINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQL-NLTFKEIIYN 454 (633)
Q Consensus 388 RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~-~~tFk~Ii~~ 454 (633)
=|.++|.+++++++.....-..| +..+... -+..+++.-|.+.|+|+-||+... ..+++|+...
T Consensus 44 wl~~v~~~~~l~~~tl~lAv~~l-DRfl~~~--~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~ 108 (269)
T 2b9r_A 44 WLVQVQMKFRLLQETMYMTVSII-DRFMQNN--SVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFV 108 (269)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH-HHHHTTS--CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH-HHHhcCC--CCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHH
Confidence 38899999999998877777777 6666544 367889999999999999999776 5789999754
No 21
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=64.84 E-value=6.5 Score=38.37 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=41.0
Q ss_pred HHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccC
Q 046343 394 ERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQL 444 (633)
Q Consensus 394 ~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~ 444 (633)
.+++++.++.+..|.++ +-++ .++++..+.=-+|-..|||..+++.+.
T Consensus 143 ~~~~~~~~~~~~A~~~l-~~s~--~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 143 HDGIINQKQLEFAWSIV-NDSY--ASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HTTSSCHHHHHHHHHHH-HHHT--TTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HHcCCCHHHHHHHHHHH-HHHH--cCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 34688899999999999 7775 567888899999999999999998764
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=62.95 E-value=1.5 Score=46.03 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCccCHHHHHHHHhcCCCCCCcceeee
Q 046343 391 AMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLNLTFKEIIYNYGKQPQCKPQVFRSV 469 (633)
Q Consensus 391 dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~~tFk~Ii~~YR~QPQa~s~VyRsV 469 (633)
.+|.+|+|+.++....|.++ +... +.++.-+|+=--|.--|||..|++.+..+|=+||-+.-.--...-...|+..
T Consensus 241 Rf~s~L~l~~~v~~~A~~i~-~~~~--~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel 316 (345)
T 4bbr_M 241 RFCSHLGLPMQVTTSAEYTA-KKCK--EIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 316 (345)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHcCCcHHHHHHHHHHH-HHHH--hcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 47899999999999999999 6655 4679999999999999999999999998888888766554333333334433
No 23
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=60.77 E-value=8.9 Score=38.78 Aligned_cols=86 Identities=16% Similarity=0.238 Sum_probs=63.2
Q ss_pred HHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccC---------ccCHHHHHHHHhcCCC
Q 046343 390 NAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQL---------NLTFKEIIYNYGKQPQ 460 (633)
Q Consensus 390 ~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~---------~~tFk~Ii~~YR~QPQ 460 (633)
..+|..|+++.++....|..+ +.++ .+.++....=-+|-..|||..+++.+. +++-.+|+.+++
T Consensus 162 ~~~~~~l~~~~~~~~~A~~~l-~~sl--~t~~~l~~~Ps~IAaAaiylA~~~~~~~~~~W~~~~~~~~~~l~~~~~---- 234 (285)
T 3rgf_B 162 LQYVQDMGQEDMLLPLAWRIV-NDTY--RTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIR---- 234 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH-HHHT--TSSHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHHTSCSCHHHHHHHHH----
T ss_pred HHHHHHhCCCHHHHHHHHHHH-HHHH--ccChhhccCHHHHHHHHHHHHHHHcCCChhhHHHHHCCCHHHHHHHHH----
Confidence 344566777888999999999 7776 467787888889999999999998764 345566666664
Q ss_pred CCCcceeeeccccceeehhhh--cc--hhhhHHHHHHhc
Q 046343 461 CKPQVFRSVFDHVDIITFYNK--IF--APTVKPLLVELG 495 (633)
Q Consensus 461 a~s~VyRsVlergDII~FYN~--VF--vp~mK~F~l~~~ 495 (633)
+|+.+|.. .| ...++..+.++.
T Consensus 235 -------------~il~ly~~~~~~~~~~~~~~~~~k~~ 260 (285)
T 3rgf_B 235 -------------VILKLYEQWKNFDERKEMATILSKMP 260 (285)
T ss_dssp -------------HHHHHHHHHHHCCHHHHHHHHHHHSC
T ss_pred -------------HHHHHHHhcccCchhhhHHHHHHhCC
Confidence 88888875 44 345666665554
No 24
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=57.83 E-value=14 Score=36.63 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccC-ccCHHHHHHH
Q 046343 386 AVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQL-NLTFKEIIYN 454 (633)
Q Consensus 386 a~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~-~~tFk~Ii~~ 454 (633)
.-=|.++|.+++++++.....-..| +..+... -+..+++.-+.+.|+|+-||+... ..+.+|+..-
T Consensus 43 vdwl~~v~~~~~l~~~tl~lAv~~l-DRfls~~--~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i 109 (260)
T 2cch_B 43 VDWLVEVGEEYKLQNETLHLAVNYI-DRFLSSM--SVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYI 109 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH-HHHhccC--CCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 3447889999999999877777777 5555533 256788989999999999999887 6899999764
No 25
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=52.73 E-value=23 Score=35.24 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=50.2
Q ss_pred HHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccC-ccCHHHHHHH
Q 046343 389 INAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQL-NLTFKEIIYN 454 (633)
Q Consensus 389 L~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~-~~tFk~Ii~~ 454 (633)
|.++|.+++++++.....-..| +..+... -+..+|+--|.++|+|+-||+... ..+.+++...
T Consensus 64 l~~v~~~~~l~~~tl~lAv~~l-DRfls~~--~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~ 127 (271)
T 2w96_A 64 MLEVCEEQKCEEEVFPLAMNYL-DRFLSLE--PVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIY 127 (271)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHH-HHHHTTS--CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHHCCchhHHHHHHHHH-HHhCCcC--CcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 8899999999988766666677 5555433 256789999999999999999886 7889998653
No 26
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=51.19 E-value=22 Score=34.83 Aligned_cols=50 Identities=12% Similarity=0.294 Sum_probs=39.9
Q ss_pred HHHHhCCCh----HHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccC
Q 046343 392 MVERLQLSQ----QIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQL 444 (633)
Q Consensus 392 LC~rL~ls~----el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~ 444 (633)
+|..|+.+. ++....|.+. +.++. +.++....=-+|-..|||..+++.+.
T Consensus 158 ~~~~l~~~~~~~~~~~~~A~~l~-~~s~~--~~~~l~~~Ps~IAaAai~lA~~~~~~ 211 (258)
T 2i53_A 158 YAKQLKGDKNKIQKLVQMAWTFV-NDSLC--TTLSLQWEPEIIAVAVMYLAGRLCKF 211 (258)
T ss_dssp HHHTBCSCHHHHHHHHHHHHHHH-HHHTT--TTGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcchHHHHHHHHHHHH-HHHHc--CCchhccChHHHHHHHHHHHHHHhCC
Confidence 455677765 6888899999 87764 56777888899999999999998664
No 27
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=50.32 E-value=15 Score=38.50 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=41.7
Q ss_pred HHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCc
Q 046343 392 MVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLN 445 (633)
Q Consensus 392 LC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~ 445 (633)
++..|+.+.++....|.++ +.++. .++++....=-+|-..|||..+++.+.+
T Consensus 160 ~~~~l~~~~~l~~~A~~ll-~~sl~-~t~l~l~y~Ps~IAaAAI~lA~~~l~~~ 211 (358)
T 2pk2_A 160 CTQLVRASKDLAQTSYFMA-TNSLH-LTTFSLQYTPPVVACVCIHLACKWSNWE 211 (358)
T ss_dssp HHHHTTCCHHHHHHHHHHH-HHHTT-TSCGGGTSCHHHHTTTTTTTHHHHTTCC
T ss_pred HHHHcCCCHHHHHHHHHHH-HHHHh-cCcchhccCHHHHHHHHHHHHHHHhCCC
Confidence 3456677889999999999 87774 5677777788899999999999987643
No 28
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=46.73 E-value=32 Score=34.64 Aligned_cols=63 Identities=11% Similarity=0.175 Sum_probs=51.5
Q ss_pred HHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccC-ccCHHHHHH
Q 046343 389 INAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQL-NLTFKEIIY 453 (633)
Q Consensus 389 L~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~-~~tFk~Ii~ 453 (633)
|.++|.+++++++.....-..| +..+... ..+..+++.-+-++|+|+-||+... ..+.+|+..
T Consensus 57 l~~v~~~~~l~~~tl~lAv~~l-DRfls~~-~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~ 120 (283)
T 1w98_B 57 LMEVCEVYKLHRETFYLAQDFF-DRYMATQ-ENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAY 120 (283)
T ss_dssp HHHHHHHTTCBHHHHHHHHHHH-HHHHHHC-CCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred HHHHHHHhCCCccHHHHHHHHH-HHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence 8899999999998877777777 6666532 2467899999999999999999865 678899875
No 29
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=46.37 E-value=29 Score=34.25 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccC-ccCHHHHHHH
Q 046343 386 AVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQL-NLTFKEIIYN 454 (633)
Q Consensus 386 a~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~-~~tFk~Ii~~ 454 (633)
.-=|.++|.+++++++.....-..| +..+... -+..+|+--|-++|+|+-||+... ..+.+|+...
T Consensus 55 vdwl~ev~~~~~l~~etl~lAv~~~-DRfls~~--~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 121 (257)
T 1g3n_C 55 GTWMFSVCQEYNLEPNVVALALNLL-DRLLLIK--QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYA 121 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH-HHHTTTC--CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHH-HHHHccC--CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHH
Confidence 4457889999999999877777777 6666543 467889999999999999999765 6788888654
No 30
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=37.67 E-value=44 Score=32.77 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=42.1
Q ss_pred HHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccCc
Q 046343 392 MVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQLN 445 (633)
Q Consensus 392 LC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~~ 445 (633)
++..|+.+.++....|..+ +.++. .++++....=-+|-..|||..+++.+.+
T Consensus 153 ~~~~l~~~~~~~~~A~~~~-~~sl~-~~~~~l~~~Ps~IAaAai~lA~~~~~~~ 204 (257)
T 2ivx_A 153 CTQLVRASKDLAQTSYFMA-TNSLH-LTTFCLQYKPTVIACVCIHLACKWSNWE 204 (257)
T ss_dssp HHHHTTCCHHHHHHHHHHH-HHHHH-HCCGGGTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCcHHHHHHHHHH-Hhhhh-cccHHHcCCHHHHHHHHHHHHHHHhCCC
Confidence 3456778889999999999 77773 4677788888999999999999986643
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=33.75 E-value=62 Score=31.73 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccC-ccCHHHHH
Q 046343 387 VRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQL-NLTFKEII 452 (633)
Q Consensus 387 ~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~-~~tFk~Ii 452 (633)
-=|.++|.+++++++.....-..| +..+... -+..+|+--|-++|+|+-||+... ..+.+|+.
T Consensus 57 dwl~~v~~~~~l~~etl~lAv~~~-DRfls~~--~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~ 120 (254)
T 2f2c_A 57 TWMHLLCESFELDKSVFPLSVSIL-DRYLCKK--QGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLT 120 (254)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHH-HHHTTTS--CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHS
T ss_pred HHHHHHHHHHCCCchHHHHHHHHH-HHHHccC--CcCHHHccHHHHHHHHHHHHhcccCCCCHHHHH
Confidence 347889999999998877777777 6666543 467889999999999999999663 67788875
No 32
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=32.82 E-value=47 Score=28.93 Aligned_cols=59 Identities=12% Similarity=0.216 Sum_probs=42.0
Q ss_pred HHHHHHHhCCCh--HHHHHHhhhcchhhhhcccccccccchh----HHHHHHHHHhhhhccCccCHHHHH
Q 046343 389 INAMVERLQLSQ--QIRESVYCLCPKRTLNQRTSLFFNCHID----QIILCCFYGVAKISQLNLTFKEII 452 (633)
Q Consensus 389 L~dLC~rL~ls~--el~~kIWt~f~e~~L~~~t~Lm~dRHLD----QIiLCaiY~icKV~k~~~tFk~Ii 452 (633)
++|||-.|+..+ +..++|-+.| +..|.+ ....++| |-.--|+|..||+.|..+.=..+|
T Consensus 6 v~dLcVqfgc~e~~~~a~~lL~~Y-k~~l~~----~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~ 70 (95)
T 3m03_A 6 IRDLAVQFSCIEAVNMASKILKSY-ESSLPQ----TQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMV 70 (95)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHH-HTTSCH----HHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-HHHhHH----HhhccccccccHHHHHHHHHHHHHHccCCCHHHHH
Confidence 689999999854 4567788888 554421 2335666 889999999999999755544433
No 33
>4gdk_C APG16-like 1, autophagy-related protein 16-1; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_C
Probab=30.49 E-value=6.8 Score=28.55 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=6.9
Q ss_pred cceeehhhhcc
Q 046343 473 VDIITFYNKIF 483 (633)
Q Consensus 473 gDII~FYN~VF 483 (633)
+|||.+||+.|
T Consensus 26 ~diI~~yNkLl 36 (36)
T 4gdk_C 26 EEIILQYNKLL 36 (36)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHhcccC
Confidence 46677777653
No 34
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=23.94 E-value=2.1e+02 Score=29.58 Aligned_cols=82 Identities=12% Similarity=0.236 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHH--H---HHHHHHhhccCchHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHhhCCCcchhhchh
Q 046343 86 QRRLEALKLNYKVLET--M---CTAEAQVLHAKNLTSLFHRCMLACSAELVLATHKTVTMLFLAVLERIGITAFNLSKVI 160 (633)
Q Consensus 86 qR~~~a~~LYYkvLE~--I---l~~E~krl~~~~ls~LFHrsLlACclEiVl~sy~~~~~~FPwILe~~~l~aFdf~KVI 160 (633)
.-..+|-++|.++-.. + ...|.++ ..-.||++.|.+ -.....++=-||..++|.-.+|.|-|
T Consensus 18 ~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~--------~w~acLY~a~~~-----~~~n~vsLt~LLr~~~lsi~~Ff~k~ 84 (304)
T 2qdj_A 18 HVRERAWLTWEKVSSVDGVLGGYIQKKKE--------LWGICIFIAAVD-----LDEMSFTFTELQKNIEISVHKFFNLL 84 (304)
T ss_dssp HHHHHHHHHHHHHHC----------CHHH--------HHHHHHHHHHHH-----HTCCCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCccchHH--------HHHHhHHHHhhc-----cCCCcCcHHHHHHHcCCCHHHHHHHH
Confidence 3566888888886552 1 1111111 133446665532 33334778899999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHH
Q 046343 161 QSFIRHEESLPRELRRHLNSLEERL 185 (633)
Q Consensus 161 E~fIRae~~LpRelvKHLn~IEEqI 185 (633)
+- .+ +|.++.+++..+|...
T Consensus 85 ~~---~d--~~~~~~~~i~~Le~~f 104 (304)
T 2qdj_A 85 KE---ID--TSTKVDNAMSRLLKKY 104 (304)
T ss_dssp TT---SC--CCHHHHHHHHHHHHHH
T ss_pred HH---cC--CCHHHHHHHHHHHHHH
Confidence 87 22 9999999999999875
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=22.79 E-value=1e+02 Score=31.38 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHhhhcchhhhhcccccccccchhHHHHHHHHHhhhhccC-ccCHHHHHHH
Q 046343 385 AAVRINAMVERLQLSQQIRESVYCLCPKRTLNQRTSLFFNCHIDQIILCCFYGVAKISQL-NLTFKEIIYN 454 (633)
Q Consensus 385 Aa~RL~dLC~rL~ls~el~~kIWt~f~e~~L~~~t~Lm~dRHLDQIiLCaiY~icKV~k~-~~tFk~Ii~~ 454 (633)
..--|.++|.+++++++.....-..| +..+... -+..+|+--|-++|+|+-||+... ..+.+++...
T Consensus 74 lvdwl~ev~~~~~l~~~t~~lAv~~l-DRfls~~--~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~ 141 (306)
T 3g33_B 74 LAYWMLEVCEEQRCEEEVFPLAMNYL-DRYLSCV--PTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIY 141 (306)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHH-HHHHHHC--CCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHH
T ss_pred HHHHHHHHHHHhCCcHhHHHHHHHHH-HHHHhcC--CCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 45568899999999998877777777 5556543 367889999999999999999553 4466666543
No 36
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=21.69 E-value=44 Score=28.93 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=26.0
Q ss_pred CccCHHHHHHHHhcCCCCCCcceeeec----------------cccceeehh
Q 046343 444 LNLTFKEIIYNYGKQPQCKPQVFRSVF----------------DHVDIITFY 479 (633)
Q Consensus 444 ~~~tFk~Ii~~YR~QPQa~s~VyRsVl----------------ergDII~FY 479 (633)
.+.+|+.||++|.++-.....-+|=.+ |-||+|.+|
T Consensus 45 ~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 45 RDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp TTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 467899999999877665555555444 778888664
Done!