Query 046345
Match_columns 1462
No_of_seqs 625 out of 6951
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 11:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7E-80 1.5E-84 768.6 47.5 806 36-990 21-865 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.3E-59 2E-63 617.4 54.6 479 155-674 182-692 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1E-38 2.2E-43 365.8 22.1 277 162-448 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 4.4E-31 9.5E-36 355.4 27.8 301 846-1255 282-582 (968)
5 PLN00113 leucine-rich repeat r 100.0 6.4E-31 1.4E-35 353.8 28.6 507 519-1219 70-582 (968)
6 PLN03210 Resistant to P. syrin 99.9 9.3E-21 2E-25 253.8 20.6 320 973-1409 590-911 (1153)
7 KOG4194 Membrane glycoprotein 99.8 8E-21 1.7E-25 211.1 5.3 369 539-1017 77-448 (873)
8 KOG4194 Membrane glycoprotein 99.8 6.2E-21 1.3E-25 212.0 4.3 345 572-1050 80-427 (873)
9 KOG0618 Serine/threonine phosp 99.8 1.4E-21 3E-26 229.6 -3.3 124 542-673 23-147 (1081)
10 KOG0472 Leucine-rich repeat pr 99.8 1.9E-22 4E-27 214.5 -11.7 106 567-674 65-171 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 3.3E-22 7.3E-27 212.5 -10.7 180 515-712 42-223 (565)
12 KOG0444 Cytoskeletal regulator 99.8 4.8E-21 1E-25 213.5 -4.4 171 519-706 8-184 (1255)
13 KOG0444 Cytoskeletal regulator 99.8 1.2E-20 2.6E-25 210.3 -4.4 174 519-705 56-232 (1255)
14 KOG0618 Serine/threonine phosp 99.8 1.3E-20 2.8E-25 221.7 -4.8 416 539-1048 44-461 (1081)
15 KOG0617 Ras suppressor protein 99.6 6.1E-17 1.3E-21 152.4 -4.0 165 531-713 24-191 (264)
16 KOG0617 Ras suppressor protein 99.4 9.2E-15 2E-19 137.9 -3.4 150 518-676 33-186 (264)
17 PRK15387 E3 ubiquitin-protein 99.3 1.6E-11 3.5E-16 151.9 14.8 93 571-675 202-294 (788)
18 PRK15387 E3 ubiquitin-protein 99.3 3E-11 6.5E-16 149.6 15.7 253 520-885 203-456 (788)
19 PRK04841 transcriptional regul 99.2 6.1E-10 1.3E-14 150.1 25.6 296 157-495 14-333 (903)
20 PRK15370 E3 ubiquitin-protein 99.2 6E-11 1.3E-15 148.2 12.5 175 518-724 178-353 (754)
21 KOG4341 F-box protein containi 99.2 4.6E-13 1E-17 145.2 -7.0 62 1360-1435 398-459 (483)
22 COG2909 MalT ATP-dependent tra 99.1 3.6E-09 7.7E-14 126.5 21.5 298 156-496 18-340 (894)
23 PF01637 Arch_ATPase: Archaeal 99.1 2.4E-10 5.2E-15 127.0 9.9 201 159-363 1-233 (234)
24 KOG4341 F-box protein containi 99.1 4.2E-12 9.2E-17 137.9 -4.8 114 1100-1219 293-412 (483)
25 KOG4658 Apoptotic ATPase [Sign 99.1 1.1E-10 2.3E-15 148.3 6.1 298 519-884 546-856 (889)
26 PRK15370 E3 ubiquitin-protein 99.1 2.8E-10 6E-15 142.4 9.3 226 518-800 199-426 (754)
27 TIGR03015 pepcterm_ATPase puta 99.1 3.9E-08 8.5E-13 111.4 26.0 195 165-368 31-242 (269)
28 PRK00411 cdc6 cell division co 99.0 5.3E-08 1.1E-12 117.0 27.5 294 157-472 30-356 (394)
29 KOG4237 Extracellular matrix p 99.0 8.8E-11 1.9E-15 126.5 2.4 138 529-674 57-199 (498)
30 KOG4237 Extracellular matrix p 99.0 2.7E-11 5.7E-16 130.5 -2.2 114 558-675 58-176 (498)
31 TIGR02928 orc1/cdc6 family rep 98.9 1.9E-07 4.1E-12 111.0 27.0 298 157-473 15-349 (365)
32 PF05729 NACHT: NACHT domain 98.9 1.1E-08 2.4E-13 106.6 11.9 151 179-335 1-164 (166)
33 PF14580 LRR_9: Leucine-rich r 98.8 3.6E-09 7.8E-14 107.2 6.2 128 568-702 17-147 (175)
34 PRK00080 ruvB Holliday junctio 98.8 7.9E-08 1.7E-12 111.3 15.9 276 154-474 22-310 (328)
35 TIGR00635 ruvB Holliday juncti 98.8 4.3E-07 9.3E-12 104.8 21.5 274 156-474 3-289 (305)
36 PF14580 LRR_9: Leucine-rich r 98.8 4.2E-09 9.2E-14 106.7 3.8 137 577-723 4-146 (175)
37 COG2256 MGS1 ATPase related to 98.7 3.9E-07 8.5E-12 100.3 18.2 224 153-411 20-265 (436)
38 KOG1259 Nischarin, modulator o 98.6 3.2E-09 7E-14 110.0 -1.5 133 570-712 284-416 (490)
39 COG0488 Uup ATPase components 98.6 3.4E-08 7.3E-13 118.3 6.6 260 11-320 211-511 (530)
40 KOG0532 Leucine-rich repeat (L 98.6 2.2E-09 4.8E-14 121.3 -3.7 174 523-716 80-255 (722)
41 cd00116 LRR_RI Leucine-rich re 98.6 3E-08 6.4E-13 116.1 5.0 136 565-706 76-232 (319)
42 KOG0532 Leucine-rich repeat (L 98.6 4.4E-09 9.6E-14 118.9 -2.9 182 523-724 55-241 (722)
43 PRK13342 recombination factor 98.6 2.2E-06 4.7E-11 102.5 19.4 177 155-365 10-197 (413)
44 PRK07003 DNA polymerase III su 98.5 3.3E-06 7.1E-11 102.2 19.9 181 155-365 14-222 (830)
45 PRK14949 DNA polymerase III su 98.5 3.3E-06 7.1E-11 104.4 18.8 180 155-364 14-220 (944)
46 KOG1259 Nischarin, modulator o 98.5 2E-08 4.2E-13 104.3 -0.3 129 538-676 282-412 (490)
47 PTZ00112 origin recognition co 98.5 1.8E-05 4E-10 96.1 23.5 205 157-368 755-986 (1164)
48 PTZ00202 tuzin; Provisional 98.4 6.5E-05 1.4E-09 84.7 24.9 163 153-334 258-434 (550)
49 PRK04195 replication factor C 98.4 1.5E-05 3.3E-10 97.3 21.7 257 155-454 12-278 (482)
50 PRK14961 DNA polymerase III su 98.4 5.5E-06 1.2E-10 97.0 17.1 192 156-362 15-218 (363)
51 PRK06893 DNA replication initi 98.4 3.4E-06 7.3E-11 91.9 13.4 154 176-365 37-204 (229)
52 PRK14960 DNA polymerase III su 98.4 6.1E-06 1.3E-10 99.0 15.7 193 155-362 13-217 (702)
53 PRK12323 DNA polymerase III su 98.3 4.4E-06 9.5E-11 99.9 14.2 198 155-363 14-224 (700)
54 COG4886 Leucine-rich repeat (L 98.3 3.7E-07 7.9E-12 110.0 5.1 143 571-724 141-284 (394)
55 KOG2028 ATPase related to the 98.3 3.7E-05 8.1E-10 82.8 18.9 149 156-334 137-294 (554)
56 COG3899 Predicted ATPase [Gene 98.3 2.1E-05 4.5E-10 101.3 20.6 267 159-439 2-333 (849)
57 cd00116 LRR_RI Leucine-rich re 98.3 4.9E-07 1.1E-11 105.8 5.4 155 538-707 79-262 (319)
58 PRK05564 DNA polymerase III su 98.3 1.2E-05 2.7E-10 92.4 16.6 176 157-362 4-188 (313)
59 TIGR02903 spore_lon_C ATP-depe 98.3 8.3E-05 1.8E-09 92.6 24.8 201 156-365 153-396 (615)
60 COG3903 Predicted ATPase [Gene 98.3 1.3E-06 2.8E-11 97.2 7.8 291 178-496 14-316 (414)
61 COG4886 Leucine-rich repeat (L 98.3 5.3E-07 1.1E-11 108.6 5.3 146 520-674 118-266 (394)
62 PRK12402 replication factor C 98.3 8.2E-06 1.8E-10 96.0 15.1 199 156-363 14-225 (337)
63 PRK14963 DNA polymerase III su 98.3 1.2E-05 2.6E-10 96.9 16.5 194 156-361 13-214 (504)
64 PRK14962 DNA polymerase III su 98.3 2E-05 4.3E-10 94.3 18.0 184 155-368 12-223 (472)
65 PRK06645 DNA polymerase III su 98.3 1.6E-05 3.4E-10 95.4 17.0 194 156-361 20-226 (507)
66 PLN03025 replication factor C 98.3 6.1E-06 1.3E-10 95.2 13.0 181 155-359 11-195 (319)
67 PRK14956 DNA polymerase III su 98.3 7E-06 1.5E-10 95.9 13.1 192 155-361 16-219 (484)
68 PRK14957 DNA polymerase III su 98.3 1.1E-05 2.5E-10 97.1 15.1 185 155-365 14-222 (546)
69 PRK15386 type III secretion pr 98.3 1.7E-06 3.8E-11 98.3 7.6 172 1100-1334 51-226 (426)
70 KOG3207 Beta-tubulin folding c 98.3 3.3E-07 7.1E-12 101.2 1.8 187 519-712 122-318 (505)
71 PF05496 RuvB_N: Holliday junc 98.2 4.4E-05 9.6E-10 79.1 17.0 183 153-365 20-222 (233)
72 PRK09112 DNA polymerase III su 98.2 3.1E-05 6.6E-10 89.1 17.7 199 153-364 19-240 (351)
73 COG1474 CDC6 Cdc6-related prot 98.2 6.3E-05 1.4E-09 86.8 20.1 200 159-363 19-237 (366)
74 PF13173 AAA_14: AAA domain 98.2 1.6E-06 3.4E-11 85.0 6.0 120 179-326 3-127 (128)
75 PF13855 LRR_8: Leucine rich r 98.2 1E-06 2.2E-11 73.2 4.0 56 571-626 2-60 (61)
76 PRK05896 DNA polymerase III su 98.2 4.1E-05 8.9E-10 92.2 18.9 197 155-366 14-223 (605)
77 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.3E-11 73.0 4.0 60 540-605 1-61 (61)
78 PRK00440 rfc replication facto 98.2 2.2E-05 4.8E-10 91.5 16.3 182 155-362 15-201 (319)
79 TIGR03420 DnaA_homol_Hda DnaA 98.2 8.6E-06 1.9E-10 89.5 11.9 170 161-365 21-202 (226)
80 PF13401 AAA_22: AAA domain; P 98.2 4.9E-06 1.1E-10 82.5 9.0 119 178-302 4-125 (131)
81 PRK07940 DNA polymerase III su 98.2 2.7E-05 5.8E-10 90.9 16.3 172 157-363 5-212 (394)
82 PRK14964 DNA polymerase III su 98.2 2.5E-05 5.5E-10 92.7 16.2 183 155-361 11-214 (491)
83 TIGR00678 holB DNA polymerase 98.2 2.6E-05 5.7E-10 82.5 14.9 157 168-360 3-187 (188)
84 PRK07471 DNA polymerase III su 98.2 4.5E-05 9.7E-10 88.3 17.6 198 154-364 16-238 (365)
85 PF05621 TniB: Bacterial TniB 98.2 3.8E-05 8.3E-10 83.6 15.5 199 163-361 43-258 (302)
86 PRK07994 DNA polymerase III su 98.2 1.5E-05 3.3E-10 97.4 13.9 195 155-364 14-220 (647)
87 TIGR02397 dnaX_nterm DNA polym 98.2 0.00012 2.5E-09 86.9 21.1 179 156-365 13-219 (355)
88 PRK15386 type III secretion pr 98.1 4.5E-06 9.8E-11 95.0 8.0 72 1243-1334 51-122 (426)
89 PRK14951 DNA polymerase III su 98.1 4.4E-05 9.6E-10 93.4 16.3 196 155-362 14-223 (618)
90 PRK14958 DNA polymerase III su 98.1 3.1E-05 6.7E-10 93.8 14.8 177 155-361 14-217 (509)
91 PRK08691 DNA polymerase III su 98.1 2.5E-05 5.4E-10 94.9 13.8 180 155-362 14-218 (709)
92 KOG3207 Beta-tubulin folding c 98.1 9.3E-07 2E-11 97.7 1.4 82 567-648 118-207 (505)
93 PRK14959 DNA polymerase III su 98.1 0.00011 2.4E-09 89.1 18.7 198 156-368 15-225 (624)
94 cd00009 AAA The AAA+ (ATPases 98.1 2.3E-05 4.9E-10 79.8 11.2 129 160-304 1-131 (151)
95 PLN03150 hypothetical protein; 98.1 5.5E-06 1.2E-10 104.1 7.9 103 571-674 419-526 (623)
96 PLN03150 hypothetical protein; 98.1 6.9E-06 1.5E-10 103.3 8.5 107 541-653 419-530 (623)
97 cd01128 rho_factor Transcripti 98.1 7.8E-06 1.7E-10 88.8 7.5 90 179-270 17-115 (249)
98 PRK14969 DNA polymerase III su 98.0 4.5E-05 9.7E-10 93.1 14.4 179 156-364 15-221 (527)
99 PF14516 AAA_35: AAA-like doma 98.0 0.00054 1.2E-08 79.1 22.5 208 155-371 9-246 (331)
100 PRK14955 DNA polymerase III su 98.0 4.2E-05 9.2E-10 90.7 13.7 199 156-362 15-226 (397)
101 PRK09111 DNA polymerase III su 98.0 7.6E-05 1.7E-09 91.7 15.7 198 154-363 21-232 (598)
102 KOG0989 Replication factor C, 98.0 5E-05 1.1E-09 80.8 11.6 189 153-364 32-231 (346)
103 PRK09087 hypothetical protein; 98.0 0.0001 2.2E-09 79.6 14.5 144 178-365 44-196 (226)
104 KOG2120 SCF ubiquitin ligase, 98.0 2.2E-07 4.7E-12 97.0 -5.8 186 1101-1315 185-373 (419)
105 PRK08727 hypothetical protein; 98.0 7.2E-05 1.6E-09 81.7 13.4 150 178-361 41-201 (233)
106 PRK13341 recombination factor 98.0 5.7E-05 1.2E-09 94.8 14.1 172 154-359 25-212 (725)
107 PRK14950 DNA polymerase III su 98.0 0.0004 8.6E-09 86.7 21.1 195 156-364 15-221 (585)
108 PRK08451 DNA polymerase III su 98.0 0.00016 3.5E-09 86.8 16.7 180 155-364 12-218 (535)
109 KOG0927 Predicted transporter 97.9 4.9E-05 1.1E-09 87.0 11.3 249 11-306 280-569 (614)
110 PRK09376 rho transcription ter 97.9 2.6E-05 5.7E-10 87.8 9.1 92 177-270 168-268 (416)
111 PRK08084 DNA replication initi 97.9 9.1E-05 2E-09 81.0 13.1 166 163-363 30-208 (235)
112 PRK14970 DNA polymerase III su 97.9 0.00017 3.6E-09 85.5 16.2 175 156-360 16-205 (367)
113 KOG2120 SCF ubiquitin ligase, 97.9 3.9E-07 8.6E-12 95.1 -5.2 93 1208-1319 234-327 (419)
114 PRK14971 DNA polymerase III su 97.9 0.00018 3.9E-09 89.2 16.8 175 156-361 16-219 (614)
115 PRK07764 DNA polymerase III su 97.9 0.00013 2.8E-09 92.8 15.7 176 156-361 14-218 (824)
116 PRK07133 DNA polymerase III su 97.9 0.00019 4.1E-09 88.5 16.4 187 156-362 17-217 (725)
117 PRK14954 DNA polymerase III su 97.9 0.00016 3.5E-09 88.9 15.8 196 156-359 15-223 (620)
118 TIGR01242 26Sp45 26S proteasom 97.9 0.00011 2.4E-09 86.6 13.9 180 156-358 121-328 (364)
119 KOG0066 eIF2-interacting prote 97.9 0.00016 3.6E-09 79.6 13.9 261 11-306 470-764 (807)
120 PF00308 Bac_DnaA: Bacterial d 97.9 0.00011 2.3E-09 79.2 12.6 166 178-363 34-207 (219)
121 PRK06305 DNA polymerase III su 97.9 0.00021 4.6E-09 85.6 16.4 178 156-364 16-223 (451)
122 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 3.9E-10 59.8 4.1 37 571-607 2-38 (44)
123 PRK14952 DNA polymerase III su 97.9 0.00028 6E-09 86.3 16.6 198 155-367 11-223 (584)
124 PF13191 AAA_16: AAA ATPase do 97.8 4.8E-05 1E-09 80.7 8.9 48 158-205 1-51 (185)
125 PRK14953 DNA polymerase III su 97.8 0.00043 9.3E-09 83.5 17.4 180 155-364 14-220 (486)
126 PRK14087 dnaA chromosomal repl 97.8 0.00027 5.8E-09 84.7 15.0 184 179-383 142-348 (450)
127 PRK07399 DNA polymerase III su 97.8 0.0018 4E-08 73.6 20.7 195 157-364 4-221 (314)
128 TIGR00767 rho transcription te 97.8 5.9E-05 1.3E-09 85.6 8.5 92 178-270 168-267 (415)
129 PRK06647 DNA polymerase III su 97.8 0.00051 1.1E-08 84.2 17.2 194 155-363 14-219 (563)
130 PHA02544 44 clamp loader, smal 97.8 0.00017 3.7E-09 83.7 12.7 151 154-332 18-171 (316)
131 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00025 5.4E-09 91.7 15.1 182 154-357 184-389 (852)
132 PRK14948 DNA polymerase III su 97.8 0.00052 1.1E-08 85.2 17.1 196 155-363 14-221 (620)
133 COG2255 RuvB Holliday junction 97.8 0.0024 5.3E-08 67.6 19.1 182 153-366 22-225 (332)
134 PRK11331 5-methylcytosine-spec 97.8 0.00011 2.4E-09 85.0 10.3 108 157-270 175-284 (459)
135 COG0466 Lon ATP-dependent Lon 97.8 0.0018 4E-08 77.4 20.3 160 159-334 325-508 (782)
136 KOG1859 Leucine-rich repeat pr 97.7 6.8E-07 1.5E-11 104.2 -7.8 106 566-675 183-291 (1096)
137 PRK03992 proteasome-activating 97.7 0.00032 7E-09 82.8 14.1 178 157-357 131-336 (389)
138 COG1121 ZnuC ABC-type Mn/Zn tr 97.7 1.7E-05 3.6E-10 84.5 2.9 149 153-306 7-202 (254)
139 KOG0531 Protein phosphatase 1, 97.7 4.4E-06 9.6E-11 100.5 -1.9 103 538-648 93-196 (414)
140 KOG1947 Leucine rich repeat pr 97.7 3.6E-06 7.9E-11 105.0 -2.7 118 1122-1257 184-308 (482)
141 PRK10636 putative ABC transpor 97.7 0.00012 2.6E-09 92.7 10.5 147 152-306 314-490 (638)
142 PRK05642 DNA replication initi 97.7 0.00049 1.1E-08 75.2 13.7 152 179-365 46-209 (234)
143 PRK14965 DNA polymerase III su 97.7 0.00059 1.3E-08 84.6 16.0 195 155-364 14-221 (576)
144 PRK05707 DNA polymerase III su 97.7 0.0009 2E-08 76.5 15.9 154 178-363 22-202 (328)
145 KOG1909 Ran GTPase-activating 97.7 7E-06 1.5E-10 88.6 -1.2 82 567-648 27-130 (382)
146 KOG2227 Pre-initiation complex 97.7 0.0041 8.8E-08 70.6 20.1 195 155-357 148-361 (529)
147 KOG1947 Leucine rich repeat pr 97.7 3.3E-06 7.2E-11 105.4 -4.5 142 1100-1255 187-332 (482)
148 KOG1859 Leucine-rich repeat pr 97.6 2.2E-06 4.9E-11 100.0 -5.5 99 572-674 166-265 (1096)
149 TIGR02639 ClpA ATP-dependent C 97.6 0.00048 1E-08 88.6 14.8 159 155-334 180-358 (731)
150 COG1120 FepC ABC-type cobalami 97.6 2.7E-05 5.9E-10 83.4 2.9 145 158-306 10-202 (258)
151 PRK05563 DNA polymerase III su 97.6 0.0011 2.5E-08 81.7 17.4 192 155-361 14-217 (559)
152 PF12799 LRR_4: Leucine Rich r 97.6 7.8E-05 1.7E-09 56.3 4.4 33 616-648 2-34 (44)
153 KOG0531 Protein phosphatase 1, 97.6 9.7E-06 2.1E-10 97.5 -1.0 107 566-675 91-198 (414)
154 PTZ00361 26 proteosome regulat 97.6 0.00076 1.6E-08 79.6 14.1 160 156-336 182-369 (438)
155 PRK14088 dnaA chromosomal repl 97.6 0.0041 8.9E-08 74.6 20.6 183 178-383 130-332 (440)
156 KOG2004 Mitochondrial ATP-depe 97.6 0.0025 5.3E-08 75.7 17.8 163 157-334 411-596 (906)
157 PRK08903 DnaA regulatory inact 97.6 0.00045 9.7E-09 75.7 11.3 166 164-368 27-203 (227)
158 PRK00149 dnaA chromosomal repl 97.6 0.002 4.3E-08 78.3 17.9 181 179-383 149-349 (450)
159 KOG0991 Replication factor C, 97.5 0.00092 2E-08 68.0 11.9 64 156-219 26-89 (333)
160 COG2884 FtsE Predicted ATPase 97.5 0.00011 2.4E-09 72.7 5.1 41 163-205 15-55 (223)
161 KOG2982 Uncharacterized conser 97.5 1E-05 2.2E-10 84.8 -2.0 69 787-864 197-265 (418)
162 CHL00095 clpC Clp protease ATP 97.5 0.00096 2.1E-08 86.9 15.3 186 156-355 178-378 (821)
163 TIGR00362 DnaA chromosomal rep 97.5 0.0012 2.6E-08 79.2 14.5 181 179-383 137-337 (405)
164 TIGR03689 pup_AAA proteasome A 97.5 0.0015 3.2E-08 78.2 14.8 168 155-336 180-380 (512)
165 KOG2543 Origin recognition com 97.5 0.0018 3.8E-08 71.5 13.6 170 157-333 6-192 (438)
166 COG1126 GlnQ ABC-type polar am 97.4 7.7E-05 1.7E-09 75.6 3.0 145 153-306 5-199 (240)
167 PRK08769 DNA polymerase III su 97.4 0.0032 6.9E-08 71.2 16.2 173 163-363 10-207 (319)
168 CHL00181 cbbX CbbX; Provisiona 97.4 0.0036 7.9E-08 70.3 16.5 138 179-335 60-210 (287)
169 TIGR02881 spore_V_K stage V sp 97.4 0.00077 1.7E-08 75.4 11.1 27 177-203 41-67 (261)
170 PTZ00454 26S protease regulato 97.4 0.0019 4.2E-08 75.8 14.6 180 156-358 144-351 (398)
171 cd03216 ABC_Carb_Monos_I This 97.4 0.00013 2.9E-09 74.8 4.0 120 173-306 23-145 (163)
172 KOG3665 ZYG-1-like serine/thre 97.4 8.1E-05 1.8E-09 93.0 2.9 88 537-630 145-235 (699)
173 COG0396 sufC Cysteine desulfur 97.4 0.00016 3.4E-09 74.2 4.3 139 163-307 17-208 (251)
174 PRK06871 DNA polymerase III su 97.4 0.0042 9.1E-08 70.4 16.1 178 164-361 9-200 (325)
175 COG1373 Predicted ATPase (AAA+ 97.4 0.0011 2.5E-08 78.1 11.9 137 161-330 21-163 (398)
176 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00034 7.4E-09 72.1 6.6 107 173-306 22-135 (177)
177 PRK06090 DNA polymerase III su 97.4 0.0094 2E-07 67.4 18.5 165 164-364 10-201 (319)
178 PRK08058 DNA polymerase III su 97.3 0.0034 7.5E-08 72.4 15.3 146 159-333 7-181 (329)
179 KOG4579 Leucine-rich repeat (L 97.3 3.7E-05 8E-10 71.4 -0.7 90 567-657 50-141 (177)
180 TIGR01241 FtsH_fam ATP-depende 97.3 0.002 4.3E-08 79.3 13.9 183 156-363 54-266 (495)
181 cd03214 ABC_Iron-Siderophores_ 97.3 0.00049 1.1E-08 72.1 7.4 125 174-306 23-161 (180)
182 PRK11034 clpA ATP-dependent Cl 97.3 0.00076 1.6E-08 85.4 10.2 165 156-334 185-362 (758)
183 PF13177 DNA_pol3_delta2: DNA 97.3 0.0013 2.8E-08 67.1 10.1 137 161-322 1-162 (162)
184 TIGR02880 cbbX_cfxQ probable R 97.3 0.0041 8.9E-08 70.0 15.1 137 180-335 60-209 (284)
185 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.3E-09 92.0 2.6 89 560-648 138-230 (699)
186 COG0488 Uup ATPase components 97.3 0.00022 4.7E-09 86.1 5.0 45 157-203 10-54 (530)
187 COG1136 SalX ABC-type antimicr 97.3 0.00028 6.1E-09 74.2 5.1 137 172-319 27-216 (226)
188 cd03223 ABCD_peroxisomal_ALDP 97.3 0.0008 1.7E-08 69.3 8.4 119 173-306 24-151 (166)
189 PRK14086 dnaA chromosomal repl 97.3 0.0039 8.5E-08 75.6 15.3 181 179-383 315-515 (617)
190 TIGR03346 chaperone_ClpB ATP-d 97.3 0.003 6.4E-08 82.7 15.5 158 155-334 171-349 (852)
191 PRK10865 protein disaggregatio 97.3 0.0018 3.9E-08 84.2 13.4 159 154-334 175-354 (857)
192 cd03238 ABC_UvrA The excision 97.3 0.00084 1.8E-08 69.2 8.3 126 174-318 19-161 (176)
193 COG1118 CysA ABC-type sulfate/ 97.3 0.0002 4.4E-09 76.6 3.6 140 160-306 12-201 (345)
194 CHL00176 ftsH cell division pr 97.3 0.0022 4.8E-08 79.7 13.3 156 179-357 217-387 (638)
195 KOG1644 U2-associated snRNP A' 97.2 0.00042 9E-09 69.4 5.4 82 566-647 60-149 (233)
196 PRK13543 cytochrome c biogenes 97.2 0.00037 7.9E-09 75.5 5.6 49 153-203 14-62 (214)
197 PRK12422 chromosomal replicati 97.2 0.0053 1.2E-07 73.4 15.7 154 179-358 142-307 (445)
198 PF10443 RNA12: RNA12 protein; 97.2 0.02 4.3E-07 65.7 19.3 193 162-371 1-285 (431)
199 COG1116 TauB ABC-type nitrate/ 97.2 0.00015 3.3E-09 76.1 2.4 144 158-306 11-194 (248)
200 PRK08181 transposase; Validate 97.2 0.005 1.1E-07 67.9 14.3 82 168-270 98-179 (269)
201 PRK06620 hypothetical protein; 97.2 0.0011 2.5E-08 70.9 9.0 135 179-360 45-185 (214)
202 PF00004 AAA: ATPase family as 97.2 0.00053 1.1E-08 67.9 6.1 69 181-270 1-70 (132)
203 COG3267 ExeA Type II secretory 97.2 0.028 6.1E-07 59.3 18.3 194 164-366 38-247 (269)
204 cd03230 ABC_DR_subfamily_A Thi 97.2 0.00059 1.3E-08 71.0 6.2 122 173-306 23-158 (173)
205 cd03246 ABCC_Protease_Secretio 97.2 0.00061 1.3E-08 70.9 6.3 124 174-306 26-159 (173)
206 COG4555 NatA ABC-type Na+ tran 97.2 0.00068 1.5E-08 67.8 6.0 38 166-205 18-55 (245)
207 COG1124 DppF ABC-type dipeptid 97.2 0.00035 7.5E-09 72.7 4.0 147 153-306 6-205 (252)
208 COG4618 ArpD ABC-type protease 97.1 0.0032 6.8E-08 72.3 11.7 40 163-204 349-388 (580)
209 COG1119 ModF ABC-type molybden 97.1 0.0012 2.6E-08 68.9 7.6 51 152-204 33-83 (257)
210 PF05673 DUF815: Protein of un 97.1 0.01 2.2E-07 63.0 14.5 50 156-205 26-79 (249)
211 COG4608 AppF ABC-type oligopep 97.1 0.0012 2.6E-08 70.6 7.6 131 167-307 30-174 (268)
212 smart00382 AAA ATPases associa 97.1 0.0012 2.5E-08 66.5 7.5 90 179-272 3-92 (148)
213 PRK10787 DNA-binding ATP-depen 97.1 0.007 1.5E-07 77.5 15.9 163 158-334 323-506 (784)
214 PRK07993 DNA polymerase III su 97.1 0.012 2.5E-07 67.7 15.9 166 164-362 9-202 (334)
215 PRK12727 flagellar biosynthesi 97.1 0.013 2.8E-07 69.6 16.3 88 179-269 351-439 (559)
216 PRK11147 ABC transporter ATPas 97.1 0.0012 2.6E-08 83.9 8.9 50 152-203 321-370 (635)
217 PRK13537 nodulation ABC transp 97.1 0.00041 8.9E-09 79.2 4.2 49 153-203 10-58 (306)
218 COG1131 CcmA ABC-type multidru 97.1 0.00037 8E-09 78.7 3.7 148 154-307 8-201 (293)
219 COG1222 RPT1 ATP-dependent 26S 97.1 0.021 4.6E-07 62.9 16.6 203 154-383 148-392 (406)
220 cd03229 ABC_Class3 This class 97.1 0.00056 1.2E-08 71.5 4.7 125 173-306 23-164 (178)
221 cd03247 ABCC_cytochrome_bd The 97.1 0.001 2.2E-08 69.6 6.7 120 174-306 26-160 (178)
222 PRK14722 flhF flagellar biosyn 97.1 0.0086 1.9E-07 68.9 14.5 88 179-269 138-226 (374)
223 cd03235 ABC_Metallic_Cations A 97.1 0.00057 1.2E-08 74.1 4.8 36 166-203 15-50 (213)
224 COG2274 SunT ABC-type bacterio 97.1 0.0011 2.3E-08 83.2 7.7 54 149-204 470-525 (709)
225 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0036 7.9E-08 75.2 11.7 160 178-358 259-429 (489)
226 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.0 0.00038 8.2E-09 75.9 3.2 36 166-203 38-73 (224)
227 COG4152 ABC-type uncharacteriz 97.0 0.00052 1.1E-08 70.8 3.8 48 155-204 7-54 (300)
228 TIGR01166 cbiO cobalt transpor 97.0 0.00065 1.4E-08 72.1 4.7 35 167-203 9-43 (190)
229 TIGR00602 rad24 checkpoint pro 97.0 0.0022 4.7E-08 79.1 9.8 50 153-202 80-134 (637)
230 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.00038 8.2E-09 74.6 2.9 123 178-307 29-158 (213)
231 cd03265 ABC_DrrA DrrA is the A 97.0 0.00045 9.7E-09 75.3 3.3 36 166-203 16-51 (220)
232 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0013 2.8E-08 65.8 6.3 106 175-306 25-130 (144)
233 cd03228 ABCC_MRP_Like The MRP 97.0 0.0019 4.1E-08 67.1 7.6 129 173-318 25-167 (171)
234 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.00081 1.7E-08 68.8 4.8 118 175-306 24-143 (157)
235 cd03225 ABC_cobalt_CbiO_domain 97.0 0.0008 1.7E-08 72.9 4.9 29 173-203 24-52 (211)
236 PRK10247 putative ABC transpor 97.0 0.00089 1.9E-08 73.1 5.3 42 160-203 17-58 (225)
237 TIGR00763 lon ATP-dependent pr 97.0 0.033 7.2E-07 72.4 20.4 164 158-334 321-505 (775)
238 KOG1644 U2-associated snRNP A' 97.0 0.001 2.2E-08 66.7 5.0 101 570-672 42-149 (233)
239 cd03269 ABC_putative_ATPase Th 97.0 0.0017 3.6E-08 70.2 7.3 29 173-203 23-51 (210)
240 cd03259 ABC_Carb_Solutes_like 97.0 0.0006 1.3E-08 73.9 3.8 36 166-203 16-51 (213)
241 KOG2982 Uncharacterized conser 96.9 0.00015 3.4E-09 76.3 -1.0 82 567-648 68-156 (418)
242 KOG4579 Leucine-rich repeat (L 96.9 0.00018 4E-09 66.9 -0.4 89 540-634 53-142 (177)
243 TIGR01188 drrA daunorubicin re 96.9 0.00062 1.3E-08 77.9 3.8 35 167-203 10-44 (302)
244 PRK11247 ssuB aliphatic sulfon 96.9 0.00095 2.1E-08 74.1 4.9 49 153-203 15-63 (257)
245 PRK09544 znuC high-affinity zi 96.9 0.0023 5E-08 70.9 7.9 128 174-306 28-184 (251)
246 PRK06526 transposase; Provisio 96.9 0.0051 1.1E-07 67.6 10.3 73 179-270 99-171 (254)
247 PRK06964 DNA polymerase III su 96.9 0.029 6.3E-07 64.2 16.6 104 244-363 114-224 (342)
248 cd03226 ABC_cobalt_CbiO_domain 96.9 0.00095 2.1E-08 71.8 4.4 29 173-203 23-51 (205)
249 cd03266 ABC_NatA_sodium_export 96.9 0.00061 1.3E-08 74.2 2.9 36 166-203 21-56 (218)
250 PRK10636 putative ABC transpor 96.9 0.00096 2.1E-08 84.5 5.0 42 160-203 11-52 (638)
251 TIGR00960 3a0501s02 Type II (G 96.9 0.0023 5E-08 69.5 7.4 35 167-203 20-54 (216)
252 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.00087 1.9E-08 73.0 3.8 36 166-203 20-55 (218)
253 cd03301 ABC_MalK_N The N-termi 96.8 0.00063 1.4E-08 73.8 2.7 36 166-203 16-51 (213)
254 cd03258 ABC_MetN_methionine_tr 96.8 0.00095 2.1E-08 73.5 4.1 36 166-203 21-56 (233)
255 TIGR01069 mutS2 MutS2 family p 96.8 0.00099 2.2E-08 84.9 4.7 194 177-386 321-523 (771)
256 cd03237 ABC_RNaseL_inhibitor_d 96.8 0.0029 6.3E-08 69.8 7.8 124 180-306 27-179 (246)
257 cd03283 ABC_MutS-like MutS-lik 96.8 0.00061 1.3E-08 72.2 2.3 116 179-307 26-152 (199)
258 cd03215 ABC_Carb_Monos_II This 96.8 0.0023 4.9E-08 67.3 6.6 28 174-203 24-51 (182)
259 cd03218 ABC_YhbG The ABC trans 96.8 0.00055 1.2E-08 75.4 2.0 36 166-203 16-51 (232)
260 TIGR03740 galliderm_ABC gallid 96.8 0.0041 9E-08 67.9 8.8 27 174-202 24-50 (223)
261 COG1117 PstB ABC-type phosphat 96.8 0.004 8.8E-08 63.2 7.6 50 151-202 8-57 (253)
262 TIGR02673 FtsE cell division A 96.8 0.0013 2.7E-08 71.5 4.5 37 165-203 17-53 (214)
263 cd03232 ABC_PDR_domain2 The pl 96.8 0.0021 4.7E-08 68.1 6.1 122 174-304 31-169 (192)
264 PRK13539 cytochrome c biogenes 96.8 0.002 4.3E-08 69.4 5.8 58 257-321 144-201 (207)
265 TIGR02324 CP_lyasePhnL phospho 96.8 0.005 1.1E-07 67.3 9.1 36 166-203 24-59 (224)
266 TIGR01288 nodI ATP-binding ABC 96.7 0.001 2.2E-08 76.3 3.7 37 165-203 19-55 (303)
267 PRK12608 transcription termina 96.7 0.01 2.2E-07 67.4 11.5 103 167-270 121-232 (380)
268 PRK13536 nodulation factor exp 96.7 0.00086 1.9E-08 77.5 3.1 50 152-203 43-92 (340)
269 PRK08116 hypothetical protein; 96.7 0.0035 7.5E-08 69.8 7.6 105 179-303 115-221 (268)
270 cd03231 ABC_CcmA_heme_exporter 96.7 0.0014 3E-08 70.2 4.2 35 167-203 17-51 (201)
271 PLN03073 ABC transporter F fam 96.7 0.0034 7.4E-08 79.9 8.4 146 153-306 511-687 (718)
272 PRK13545 tagH teichoic acids e 96.7 0.0055 1.2E-07 73.0 9.4 125 173-306 47-206 (549)
273 cd03268 ABC_BcrA_bacitracin_re 96.7 0.0033 7.1E-08 67.9 7.1 28 174-203 24-51 (208)
274 PRK11264 putative amino-acid A 96.7 0.0016 3.5E-08 72.6 4.8 37 165-203 18-54 (250)
275 PF02562 PhoH: PhoH-like prote 96.7 0.011 2.4E-07 61.8 10.6 53 162-216 5-57 (205)
276 PRK10938 putative molybdenum t 96.7 0.0018 4E-08 80.0 5.8 42 160-203 13-54 (490)
277 PRK15439 autoinducer 2 ABC tra 96.7 0.0017 3.7E-08 80.5 5.4 148 153-306 14-203 (510)
278 PRK13538 cytochrome c biogenes 96.7 0.0043 9.4E-08 66.6 7.9 35 167-203 18-52 (204)
279 cd03236 ABC_RNaseL_inhibitor_d 96.7 0.0034 7.4E-08 69.5 7.2 37 165-204 16-52 (255)
280 COG2812 DnaX DNA polymerase II 96.7 0.015 3.2E-07 69.4 12.7 189 156-359 15-215 (515)
281 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.00081 1.8E-08 71.8 2.2 34 166-201 16-49 (200)
282 TIGR03608 L_ocin_972_ABC putat 96.7 0.0012 2.7E-08 71.1 3.5 29 173-203 21-49 (206)
283 PRK15064 ABC transporter ATP-b 96.7 0.0012 2.7E-08 82.3 4.0 36 166-203 17-52 (530)
284 COG3845 ABC-type uncharacteriz 96.7 0.0011 2.4E-08 76.0 3.1 134 167-306 21-203 (501)
285 cd03267 ABC_NatA_like Similar 96.7 0.0015 3.3E-08 71.9 4.1 36 166-203 37-72 (236)
286 PRK11124 artP arginine transpo 96.7 0.0016 3.4E-08 72.3 4.3 36 166-203 18-53 (242)
287 TIGR01189 ccmA heme ABC export 96.6 0.0067 1.5E-07 64.8 8.9 29 173-203 23-51 (198)
288 KOG0734 AAA+-type ATPase conta 96.6 0.0046 1E-07 70.8 7.8 97 153-270 303-408 (752)
289 TIGR03771 anch_rpt_ABC anchore 96.6 0.0059 1.3E-07 66.5 8.6 27 175-203 5-31 (223)
290 TIGR02640 gas_vesic_GvpN gas v 96.6 0.04 8.6E-07 61.5 15.3 56 163-225 8-63 (262)
291 PRK11248 tauB taurine transpor 96.6 0.0049 1.1E-07 68.6 8.1 29 173-203 24-52 (255)
292 cd03213 ABCG_EPDR ABCG transpo 96.6 0.0012 2.6E-08 70.1 3.1 128 165-304 24-172 (194)
293 PRK11147 ABC transporter ATPas 96.6 0.0017 3.7E-08 82.6 4.9 42 160-203 13-54 (635)
294 TIGR03345 VI_ClpV1 type VI sec 96.6 0.018 3.9E-07 74.8 14.3 106 157-270 566-680 (852)
295 cd03294 ABC_Pro_Gly_Bertaine T 96.6 0.0017 3.7E-08 73.0 4.4 29 173-203 47-75 (269)
296 cd03224 ABC_TM1139_LivF_branch 96.6 0.00089 1.9E-08 73.2 2.1 29 173-203 23-51 (222)
297 KOG0731 AAA+-type ATPase conta 96.6 0.02 4.3E-07 70.5 13.4 185 153-361 310-521 (774)
298 cd03293 ABC_NrtD_SsuB_transpor 96.6 0.005 1.1E-07 67.1 7.8 29 173-203 27-55 (220)
299 TIGR03864 PQQ_ABC_ATP ABC tran 96.6 0.0055 1.2E-07 67.6 8.1 29 173-203 24-52 (236)
300 PRK13540 cytochrome c biogenes 96.6 0.005 1.1E-07 65.9 7.5 36 166-203 17-52 (200)
301 PRK07952 DNA replication prote 96.6 0.046 1E-06 59.5 14.9 92 162-270 81-174 (244)
302 cd03219 ABC_Mj1267_LivG_branch 96.6 0.00083 1.8E-08 74.2 1.5 35 167-203 17-51 (236)
303 KOG1909 Ran GTPase-activating 96.6 0.0011 2.4E-08 72.1 2.4 164 538-708 90-283 (382)
304 PRK08118 topology modulation p 96.6 0.0013 2.8E-08 67.5 2.7 35 179-213 2-37 (167)
305 COG0593 DnaA ATPase involved i 96.6 0.024 5.3E-07 65.4 13.2 185 177-386 112-316 (408)
306 cd03292 ABC_FtsE_transporter F 96.6 0.0043 9.3E-08 67.3 7.0 29 173-203 24-52 (214)
307 cd03261 ABC_Org_Solvent_Resist 96.6 0.0045 9.9E-08 68.2 7.3 29 173-203 23-51 (235)
308 PRK09493 glnQ glutamine ABC tr 96.6 0.0018 3.8E-08 71.8 3.9 35 167-203 18-52 (240)
309 PRK10908 cell division protein 96.6 0.005 1.1E-07 67.2 7.4 29 173-203 25-53 (222)
310 TIGR02639 ClpA ATP-dependent C 96.6 0.032 6.9E-07 72.1 15.7 102 158-270 455-565 (731)
311 PRK12377 putative replication 96.5 0.052 1.1E-06 59.3 14.9 74 178-269 101-174 (248)
312 PF00448 SRP54: SRP54-type pro 96.5 0.015 3.3E-07 61.2 10.5 89 178-268 1-93 (196)
313 TIGR01277 thiQ thiamine ABC tr 96.5 0.0086 1.9E-07 64.8 9.0 27 175-203 23-49 (213)
314 cd03296 ABC_CysA_sulfate_impor 96.5 0.00063 1.4E-08 75.2 0.1 36 166-203 18-53 (239)
315 TIGR02315 ABC_phnC phosphonate 96.5 0.0023 4.9E-08 71.1 4.6 37 165-203 17-53 (243)
316 cd03263 ABC_subfamily_A The AB 96.5 0.0022 4.9E-08 69.9 4.4 37 165-203 17-53 (220)
317 PRK14250 phosphate ABC transpo 96.5 0.0018 4E-08 71.5 3.8 36 166-203 19-54 (241)
318 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0021 4.6E-08 69.7 4.1 29 173-203 23-51 (213)
319 TIGR03410 urea_trans_UrtE urea 96.5 0.0019 4.1E-08 71.0 3.8 37 165-203 15-51 (230)
320 COG0542 clpA ATP-binding subun 96.5 0.13 2.8E-06 64.2 19.7 104 158-270 492-605 (786)
321 TIGR01243 CDC48 AAA family ATP 96.5 0.019 4.2E-07 74.4 13.5 180 156-360 177-383 (733)
322 TIGR01243 CDC48 AAA family ATP 96.5 0.035 7.7E-07 72.0 15.9 179 157-358 453-657 (733)
323 KOG0741 AAA+-type ATPase [Post 96.5 0.044 9.6E-07 63.1 14.2 152 177-354 537-704 (744)
324 PRK09580 sufC cysteine desulfu 96.5 0.0018 3.8E-08 72.2 3.5 34 166-201 17-50 (248)
325 COG0470 HolB ATPase involved i 96.5 0.02 4.4E-07 66.9 12.6 143 159-325 3-172 (325)
326 cd03295 ABC_OpuCA_Osmoprotecti 96.5 0.0053 1.1E-07 68.0 7.2 29 173-203 24-52 (242)
327 PRK13651 cobalt transporter AT 96.5 0.0073 1.6E-07 68.9 8.5 35 167-203 24-58 (305)
328 KOG0733 Nuclear AAA ATPase (VC 96.5 0.041 8.8E-07 64.6 14.1 179 156-358 189-396 (802)
329 COG4586 ABC-type uncharacteriz 96.5 0.0078 1.7E-07 63.5 7.7 28 175-204 49-76 (325)
330 TIGR02858 spore_III_AA stage I 96.5 0.01 2.2E-07 65.6 9.2 118 175-306 108-232 (270)
331 PRK13409 putative ATPase RIL; 96.5 0.0046 9.9E-08 77.2 7.3 138 173-319 362-528 (590)
332 PRK14269 phosphate ABC transpo 96.5 0.0037 7.9E-08 69.4 5.8 34 167-202 19-52 (246)
333 cd03250 ABCC_MRP_domain1 Domai 96.5 0.013 2.9E-07 62.9 9.9 38 165-204 20-57 (204)
334 COG4133 CcmA ABC-type transpor 96.5 0.0043 9.4E-08 61.8 5.4 36 167-204 19-54 (209)
335 PRK13546 teichoic acids export 96.5 0.0054 1.2E-07 68.4 7.0 28 174-203 48-75 (264)
336 PRK00409 recombination and DNA 96.5 0.0077 1.7E-07 77.3 9.3 188 176-386 325-528 (782)
337 KOG0062 ATPase component of AB 96.5 0.008 1.7E-07 69.1 8.2 121 180-306 392-542 (582)
338 TIGR02770 nickel_nikD nickel i 96.5 0.009 2E-07 65.5 8.6 27 175-203 11-37 (230)
339 PRK10584 putative ABC transpor 96.5 0.0031 6.8E-08 69.2 5.0 36 166-203 26-61 (228)
340 COG1122 CbiO ABC-type cobalt t 96.5 0.0039 8.4E-08 67.2 5.5 37 166-204 20-56 (235)
341 PF04665 Pox_A32: Poxvirus A32 96.4 0.0085 1.8E-07 64.1 7.9 35 180-216 15-49 (241)
342 PRK14247 phosphate ABC transpo 96.4 0.0039 8.5E-08 69.5 5.8 37 165-203 18-54 (250)
343 PRK08699 DNA polymerase III su 96.4 0.031 6.7E-07 64.0 13.0 156 176-360 19-202 (325)
344 TIGR01184 ntrCD nitrate transp 96.4 0.0088 1.9E-07 65.5 8.3 27 175-203 10-36 (230)
345 KOG2035 Replication factor C, 96.4 0.025 5.5E-07 59.7 10.9 206 159-386 15-261 (351)
346 PRK13649 cbiO cobalt transport 96.4 0.0058 1.3E-07 69.3 7.0 28 173-202 30-57 (280)
347 PRK10619 histidine/lysine/argi 96.4 0.0061 1.3E-07 68.2 7.1 35 167-203 22-56 (257)
348 PRK10895 lipopolysaccharide AB 96.4 0.002 4.4E-08 71.3 3.2 35 167-203 20-54 (241)
349 PRK00771 signal recognition pa 96.4 0.07 1.5E-06 63.3 16.0 88 177-268 94-185 (437)
350 PRK10744 pstB phosphate transp 96.4 0.0055 1.2E-07 68.7 6.6 36 165-202 28-63 (260)
351 PRK11701 phnK phosphonate C-P 96.4 0.0024 5.3E-08 71.4 3.8 36 166-203 22-57 (258)
352 PRK13638 cbiO cobalt transport 96.4 0.002 4.4E-08 72.6 3.1 37 165-203 16-52 (271)
353 KOG0743 AAA+-type ATPase [Post 96.4 0.32 7E-06 56.0 20.3 176 163-371 211-417 (457)
354 TIGR03005 ectoine_ehuA ectoine 96.4 0.0024 5.2E-08 71.2 3.7 29 173-203 23-51 (252)
355 COG1223 Predicted ATPase (AAA+ 96.4 0.024 5.1E-07 59.2 10.3 177 157-357 121-318 (368)
356 PRK10575 iron-hydroxamate tran 96.4 0.00068 1.5E-08 76.1 -0.7 37 165-203 26-62 (265)
357 PHA00729 NTP-binding motif con 96.4 0.018 3.9E-07 60.9 9.7 35 168-202 7-41 (226)
358 TIGR03522 GldA_ABC_ATP gliding 96.4 0.0082 1.8E-07 68.7 7.9 28 174-203 26-53 (301)
359 PRK13647 cbiO cobalt transport 96.4 0.0075 1.6E-07 68.0 7.5 36 166-203 21-56 (274)
360 COG5238 RNA1 Ran GTPase-activa 96.4 0.0017 3.6E-08 67.9 2.0 82 567-648 27-130 (388)
361 COG3910 Predicted ATPase [Gene 96.4 0.017 3.7E-07 57.4 8.7 26 177-202 36-61 (233)
362 COG0410 LivF ABC-type branched 96.4 0.0013 2.9E-08 68.0 1.3 50 153-204 6-55 (237)
363 PRK13548 hmuV hemin importer A 96.4 0.002 4.4E-08 71.9 2.8 37 165-203 17-53 (258)
364 PRK13643 cbiO cobalt transport 96.4 0.0042 9.1E-08 70.5 5.4 35 167-203 23-57 (288)
365 cd03298 ABC_ThiQ_thiamine_tran 96.3 0.0051 1.1E-07 66.5 5.8 28 174-203 22-49 (211)
366 TIGR03873 F420-0_ABC_ATP propo 96.3 0.00084 1.8E-08 75.1 -0.3 36 166-203 17-52 (256)
367 cd03297 ABC_ModC_molybdenum_tr 96.3 0.0098 2.1E-07 64.5 7.9 25 179-203 24-48 (214)
368 cd03243 ABC_MutS_homologs The 96.3 0.0015 3.3E-08 69.9 1.5 24 179-202 30-53 (202)
369 PRK15056 manganese/iron transp 96.3 0.009 2E-07 67.3 7.8 29 173-203 30-58 (272)
370 cd03260 ABC_PstB_phosphate_tra 96.3 0.004 8.7E-08 68.2 4.8 28 173-202 23-50 (227)
371 PRK13634 cbiO cobalt transport 96.3 0.011 2.4E-07 67.2 8.5 29 173-203 30-58 (290)
372 COG4619 ABC-type uncharacteriz 96.3 0.0041 8.9E-08 60.3 4.1 34 168-203 21-54 (223)
373 PRK11153 metN DL-methionine tr 96.3 0.0092 2E-07 69.4 7.8 29 173-203 28-56 (343)
374 TIGR01978 sufC FeS assembly AT 96.3 0.0032 7E-08 69.9 3.9 34 166-201 16-49 (243)
375 PRK13650 cbiO cobalt transport 96.3 0.008 1.7E-07 68.0 7.0 29 173-203 30-58 (279)
376 cd03253 ABCC_ATM1_transporter 96.3 0.014 3E-07 64.5 8.7 29 173-203 24-52 (236)
377 PRK11300 livG leucine/isoleuci 96.3 0.0021 4.5E-08 71.9 2.2 36 166-203 21-56 (255)
378 cd03256 ABC_PhnC_transporter A 96.3 0.0029 6.2E-08 70.2 3.3 36 166-203 17-52 (241)
379 PRK14246 phosphate ABC transpo 96.3 0.005 1.1E-07 68.6 5.2 45 157-203 17-61 (257)
380 PRK10762 D-ribose transporter 96.3 0.0015 3.2E-08 80.9 1.1 37 165-203 19-55 (501)
381 PRK13641 cbiO cobalt transport 96.3 0.005 1.1E-07 69.9 5.3 36 166-203 23-58 (287)
382 PRK09984 phosphonate/organopho 96.2 0.0055 1.2E-07 68.8 5.5 37 165-203 19-55 (262)
383 PRK15064 ABC transporter ATP-b 96.2 0.004 8.7E-08 77.8 4.9 146 153-306 322-498 (530)
384 cd03257 ABC_NikE_OppD_transpor 96.2 0.005 1.1E-07 67.6 5.1 36 166-203 21-56 (228)
385 PRK14273 phosphate ABC transpo 96.2 0.0067 1.5E-07 67.7 6.1 48 154-203 11-58 (254)
386 PRK13541 cytochrome c biogenes 96.2 0.011 2.4E-07 62.8 7.6 27 175-203 25-51 (195)
387 cd03264 ABC_drug_resistance_li 96.2 0.011 2.5E-07 63.8 7.7 24 180-203 27-50 (211)
388 cd03233 ABC_PDR_domain1 The pl 96.2 0.011 2.4E-07 63.2 7.5 29 173-203 30-58 (202)
389 COG0542 clpA ATP-binding subun 96.2 0.013 2.7E-07 72.8 8.7 161 155-334 168-346 (786)
390 cd03300 ABC_PotA_N PotA is an 96.2 0.0036 7.7E-08 68.8 3.8 37 166-204 16-52 (232)
391 PRK11000 maltose/maltodextrin 96.2 0.011 2.3E-07 69.5 7.9 29 173-203 26-54 (369)
392 PRK11614 livF leucine/isoleuci 96.2 0.0023 5.1E-08 70.6 2.3 37 165-203 20-56 (237)
393 KOG2123 Uncharacterized conser 96.2 0.00052 1.1E-08 71.7 -2.6 80 592-673 18-98 (388)
394 PRK11819 putative ABC transpor 96.2 0.005 1.1E-07 77.2 5.5 47 155-203 11-58 (556)
395 TIGR02314 ABC_MetN D-methionin 96.2 0.0096 2.1E-07 68.7 7.3 36 167-204 22-57 (343)
396 KOG0739 AAA+-type ATPase [Post 96.2 0.037 8E-07 58.9 10.7 157 178-357 166-334 (439)
397 KOG0062 ATPase component of AB 96.2 0.0031 6.8E-08 72.3 3.2 142 154-306 84-258 (582)
398 cd03244 ABCC_MRP_domain2 Domai 96.2 0.016 3.4E-07 63.3 8.7 37 165-203 19-55 (221)
399 PRK13648 cbiO cobalt transport 96.2 0.012 2.6E-07 66.3 7.9 36 166-203 25-60 (269)
400 PRK04132 replication factor C 96.2 0.061 1.3E-06 68.5 14.8 152 186-362 574-729 (846)
401 PRK14242 phosphate transporter 96.2 0.0089 1.9E-07 66.8 6.8 36 165-202 21-56 (253)
402 PRK10418 nikD nickel transport 96.2 0.017 3.7E-07 64.4 9.1 36 166-203 19-54 (254)
403 TIGR01425 SRP54_euk signal rec 96.2 0.27 5.9E-06 57.8 19.0 39 176-216 98-136 (429)
404 PRK13644 cbiO cobalt transport 96.2 0.015 3.2E-07 65.6 8.5 35 167-203 19-53 (274)
405 PRK06995 flhF flagellar biosyn 96.2 0.11 2.4E-06 62.0 16.0 87 179-268 257-344 (484)
406 cd03369 ABCC_NFT1 Domain 2 of 96.2 0.025 5.4E-07 60.9 10.0 36 166-203 24-59 (207)
407 TIGR00972 3a0107s01c2 phosphat 96.2 0.0066 1.4E-07 67.5 5.5 37 165-203 16-52 (247)
408 PRK11650 ugpC glycerol-3-phosp 96.1 0.0028 6E-08 73.9 2.5 36 167-204 21-56 (356)
409 KOG0733 Nuclear AAA ATPase (VC 96.1 0.19 4.1E-06 59.4 16.9 132 178-335 545-693 (802)
410 PF01695 IstB_IS21: IstB-like 96.1 0.0056 1.2E-07 63.5 4.5 101 179-303 48-150 (178)
411 PRK13409 putative ATPase RIL; 96.1 0.005 1.1E-07 76.8 4.9 43 158-203 81-124 (590)
412 TIGR02211 LolD_lipo_ex lipopro 96.1 0.012 2.5E-07 64.3 7.3 29 173-203 28-56 (221)
413 PRK14248 phosphate ABC transpo 96.1 0.0085 1.8E-07 67.5 6.3 48 153-202 24-71 (268)
414 PRK10771 thiQ thiamine transpo 96.1 0.0059 1.3E-07 67.1 4.9 27 175-203 24-50 (232)
415 cd03254 ABCC_Glucan_exporter_l 96.1 0.018 3.8E-07 63.3 8.7 36 166-203 19-54 (229)
416 PRK13631 cbiO cobalt transport 96.1 0.016 3.5E-07 66.6 8.6 37 165-203 41-77 (320)
417 TIGR03258 PhnT 2-aminoethylpho 96.1 0.0027 5.8E-08 74.0 2.2 37 166-204 21-57 (362)
418 PRK11831 putative ABC transpor 96.1 0.012 2.6E-07 66.3 7.4 29 173-203 30-58 (269)
419 CHL00131 ycf16 sulfate ABC tra 96.1 0.0056 1.2E-07 68.4 4.8 35 165-201 22-56 (252)
420 PRK10253 iron-enterobactin tra 96.1 0.0044 9.5E-08 69.6 3.9 37 165-203 22-58 (265)
421 PRK13549 xylose transporter AT 96.1 0.0047 1E-07 76.6 4.6 47 155-203 10-56 (506)
422 PRK13640 cbiO cobalt transport 96.1 0.012 2.6E-07 66.7 7.4 29 173-203 30-58 (282)
423 PRK09700 D-allose transporter 96.1 0.002 4.4E-08 80.0 1.3 47 155-203 10-56 (510)
424 PRK11231 fecE iron-dicitrate t 96.1 0.0014 3.1E-08 73.2 -0.1 36 166-203 18-53 (255)
425 PRK14259 phosphate ABC transpo 96.1 0.0054 1.2E-07 69.0 4.6 36 165-202 28-63 (269)
426 PRK11144 modC molybdate transp 96.1 0.017 3.6E-07 67.6 8.7 27 175-203 23-49 (352)
427 PRK11629 lolD lipoprotein tran 96.1 0.012 2.7E-07 64.6 7.2 35 167-203 26-60 (233)
428 PLN00020 ribulose bisphosphate 96.1 0.1 2.2E-06 58.8 14.0 160 176-359 146-333 (413)
429 COG3840 ThiQ ABC-type thiamine 96.1 0.023 5E-07 56.2 8.0 33 180-215 27-59 (231)
430 PRK15112 antimicrobial peptide 96.1 0.012 2.6E-07 66.1 7.2 37 165-203 28-64 (267)
431 PRK10982 galactose/methyl gala 96.1 0.0061 1.3E-07 75.4 5.2 36 166-203 14-49 (491)
432 cd03280 ABC_MutS2 MutS2 homolo 96.1 0.0034 7.4E-08 67.0 2.5 21 179-199 29-49 (200)
433 KOG0730 AAA+-type ATPase [Post 96.1 0.2 4.2E-06 60.1 16.9 140 176-336 466-617 (693)
434 PRK11288 araG L-arabinose tran 96.1 0.015 3.3E-07 72.0 8.7 35 166-202 269-303 (501)
435 KOG1969 DNA replication checkp 96.1 0.013 2.8E-07 70.2 7.3 75 177-270 325-399 (877)
436 cd03227 ABC_Class2 ABC-type Cl 96.0 0.018 3.8E-07 59.1 7.7 110 179-307 22-145 (162)
437 TIGR03411 urea_trans_UrtD urea 96.0 0.019 4E-07 63.7 8.5 29 173-203 25-53 (242)
438 PRK14265 phosphate ABC transpo 96.0 0.0064 1.4E-07 68.5 4.7 48 153-202 23-70 (274)
439 PRK10867 signal recognition pa 96.0 0.34 7.3E-06 57.5 19.0 60 176-236 98-158 (433)
440 TIGR03269 met_CoM_red_A2 methy 96.0 0.0056 1.2E-07 76.4 4.6 36 165-202 15-50 (520)
441 PRK08533 flagellar accessory p 96.0 0.022 4.7E-07 62.0 8.6 87 179-270 25-129 (230)
442 PLN03073 ABC transporter F fam 96.0 0.003 6.6E-08 80.3 2.2 47 153-201 180-226 (718)
443 TIGR02323 CP_lyasePhnK phospho 96.0 0.0073 1.6E-07 67.4 5.1 36 166-203 19-54 (253)
444 smart00534 MUTSac ATPase domai 96.0 0.002 4.3E-08 67.7 0.5 122 180-307 1-126 (185)
445 PRK14245 phosphate ABC transpo 96.0 0.0086 1.9E-07 66.7 5.6 33 167-201 20-52 (250)
446 PRK10419 nikE nickel transport 96.0 0.018 3.8E-07 64.8 8.1 36 166-203 28-63 (268)
447 PLN03211 ABC transporter G-25; 96.0 0.0089 1.9E-07 75.7 6.3 37 165-203 83-119 (659)
448 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.008 1.7E-07 63.8 5.0 120 179-307 30-155 (204)
449 TIGR02237 recomb_radB DNA repa 96.0 0.026 5.7E-07 60.9 9.1 47 178-227 12-58 (209)
450 PRK10522 multidrug transporter 96.0 0.008 1.7E-07 75.4 5.7 37 165-203 338-374 (547)
451 COG1134 TagH ABC-type polysacc 96.0 0.0063 1.4E-07 63.8 3.9 39 166-206 43-81 (249)
452 PRK13639 cbiO cobalt transport 96.0 0.018 3.8E-07 65.1 7.9 29 173-203 25-53 (275)
453 TIGR00968 3a0106s01 sulfate AB 96.0 0.019 4.1E-07 63.3 8.0 29 173-203 23-51 (237)
454 TIGR02142 modC_ABC molybdenum 96.0 0.017 3.7E-07 67.7 8.0 27 175-203 22-48 (354)
455 PRK11432 fbpC ferric transport 96.0 0.0042 9.2E-08 72.1 2.9 37 166-204 22-58 (351)
456 PRK11607 potG putrescine trans 96.0 0.0052 1.1E-07 72.0 3.7 50 153-204 22-71 (377)
457 PRK15093 antimicrobial peptide 96.0 0.0075 1.6E-07 69.8 5.0 36 166-203 23-58 (330)
458 cd03299 ABC_ModC_like Archeal 95.9 0.02 4.3E-07 63.1 8.0 28 175-204 24-51 (235)
459 PRK14236 phosphate transporter 95.9 0.0083 1.8E-07 67.6 5.1 49 152-202 27-75 (272)
460 PRK13646 cbiO cobalt transport 95.9 0.022 4.8E-07 64.7 8.5 36 166-203 23-58 (286)
461 cd01393 recA_like RecA is a b 95.9 0.044 9.5E-07 60.1 10.7 48 179-226 20-71 (226)
462 PRK13645 cbiO cobalt transport 95.9 0.01 2.2E-07 67.6 5.8 36 166-203 27-62 (289)
463 PRK09452 potA putrescine/sperm 95.9 0.0041 8.8E-08 72.7 2.6 36 167-204 31-66 (375)
464 TIGR00958 3a01208 Conjugate Tr 95.9 0.032 6.9E-07 72.3 11.0 38 165-204 496-533 (711)
465 cd03245 ABCC_bacteriocin_expor 95.9 0.017 3.8E-07 62.9 7.5 36 166-203 20-55 (220)
466 PRK14237 phosphate transporter 95.9 0.009 2E-07 67.1 5.3 36 165-202 35-70 (267)
467 TIGR02633 xylG D-xylose ABC tr 95.9 0.0066 1.4E-07 75.4 4.6 37 165-203 16-52 (500)
468 TIGR03719 ABC_ABC_ChvD ATP-bin 95.9 0.0091 2E-07 74.9 5.8 37 165-203 20-56 (552)
469 KOG0927 Predicted transporter 95.9 0.011 2.3E-07 68.6 5.7 45 257-306 238-282 (614)
470 PRK14261 phosphate ABC transpo 95.9 0.0085 1.8E-07 66.9 5.0 34 166-201 22-55 (253)
471 PF13207 AAA_17: AAA domain; P 95.9 0.0072 1.6E-07 58.6 3.9 23 180-202 1-23 (121)
472 PRK14268 phosphate ABC transpo 95.9 0.0064 1.4E-07 68.0 4.0 36 165-202 27-62 (258)
473 COG0464 SpoVK ATPases of the A 95.9 0.05 1.1E-06 67.4 12.2 139 177-336 275-425 (494)
474 PRK09473 oppD oligopeptide tra 95.9 0.018 3.9E-07 66.5 7.7 37 166-204 32-68 (330)
475 PRK13633 cobalt transporter AT 95.9 0.021 4.5E-07 64.7 8.1 36 166-203 26-61 (280)
476 smart00763 AAA_PrkA PrkA AAA d 95.9 0.011 2.4E-07 67.0 5.7 46 158-203 52-103 (361)
477 cd03252 ABCC_Hemolysin The ABC 95.9 0.02 4.4E-07 63.2 7.9 29 173-203 25-53 (237)
478 PRK14240 phosphate transporter 95.9 0.01 2.3E-07 66.1 5.6 35 166-202 19-53 (250)
479 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.9 0.023 5E-07 62.8 8.2 29 173-203 26-54 (238)
480 KOG2228 Origin recognition com 95.9 0.099 2.2E-06 57.2 12.3 169 157-334 24-219 (408)
481 PRK14254 phosphate ABC transpo 95.9 0.014 3E-07 66.2 6.5 47 154-202 43-89 (285)
482 PRK10865 protein disaggregatio 95.9 0.087 1.9E-06 68.9 14.6 105 158-270 569-682 (857)
483 PRK06067 flagellar accessory p 95.9 0.028 6.1E-07 61.8 8.8 87 178-269 25-131 (234)
484 COG3842 PotA ABC-type spermidi 95.9 0.0031 6.7E-08 71.3 1.2 52 152-205 7-58 (352)
485 PRK13652 cbiO cobalt transport 95.9 0.019 4.2E-07 64.8 7.6 29 173-203 27-55 (277)
486 PRK09536 btuD corrinoid ABC tr 95.9 0.022 4.7E-07 67.1 8.2 35 167-203 20-54 (402)
487 PRK13632 cbiO cobalt transport 95.8 0.0072 1.6E-07 68.1 4.1 36 166-203 25-60 (271)
488 PRK13635 cbiO cobalt transport 95.8 0.02 4.4E-07 64.6 7.6 36 166-203 23-58 (279)
489 cd03251 ABCC_MsbA MsbA is an e 95.8 0.021 4.6E-07 62.9 7.6 29 173-203 25-53 (234)
490 cd03284 ABC_MutS1 MutS1 homolo 95.8 0.005 1.1E-07 66.2 2.6 24 179-202 31-54 (216)
491 KOG1514 Origin recognition com 95.8 0.18 3.9E-06 60.8 15.3 194 157-364 396-621 (767)
492 PRK10982 galactose/methyl gala 95.8 0.017 3.7E-07 71.5 7.6 35 166-202 264-298 (491)
493 PRK10536 hypothetical protein; 95.8 0.044 9.4E-07 59.1 9.4 57 154-212 52-108 (262)
494 PRK15439 autoinducer 2 ABC tra 95.8 0.023 5.1E-07 70.5 8.6 34 167-202 280-313 (510)
495 PRK14262 phosphate ABC transpo 95.8 0.011 2.3E-07 66.0 5.1 35 166-202 19-53 (250)
496 PRK14258 phosphate ABC transpo 95.8 0.0073 1.6E-07 67.6 3.8 38 165-204 22-59 (261)
497 PRK14723 flhF flagellar biosyn 95.8 0.21 4.5E-06 62.8 16.5 87 179-268 186-273 (767)
498 COG1875 NYN ribonuclease and A 95.8 0.043 9.3E-07 60.6 9.2 53 158-210 225-278 (436)
499 cd03287 ABC_MSH3_euk MutS3 hom 95.8 0.0062 1.3E-07 65.4 2.9 121 178-307 31-158 (222)
500 PRK14235 phosphate transporter 95.8 0.04 8.7E-07 61.9 9.6 29 173-203 42-70 (267)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7e-80 Score=768.61 Aligned_cols=806 Identities=27% Similarity=0.387 Sum_probs=573.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHh-----------------
Q 046345 36 SYIDELKNQVRQLGYKREMVQQPVNQASLQRDEIYEGVTNWLNSVDEFSEGVAKSIIDDEDRA----------------- 98 (1462)
Q Consensus 36 ~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~~~~~~~~~~ed~ld~~~~~----------------- 98 (1462)
..+.+.++.+..|++.+..++.++++|+++ ......++.|...+++++|+ |++.++.+.-.
T Consensus 21 ~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~-~e~~~~~~~v~~~~~~~~~~l~~~~~~~ 98 (889)
T KOG4658|consen 21 ECLDGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYL-AEDIIWLFLVEEIERKANDLLSTRSVER 98 (889)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhhhHHHH
Confidence 445666778999999999999999999998 44568889999999999999 99988765211
Q ss_pred hcccccCCC-CChhhhhHhhHHHHHHHHHHHHHhhcCCCccccc-CCCCCCCCccccCCccccchhHHHHHHHHHHhccC
Q 046345 99 KKSCFKGLC-PNLISRYKLSKQAATTAEAAANLVGEGNFSNVSF-RPTPRSTGHIQVKDYEAFDSRMKVFQDVVEAAKDD 176 (1462)
Q Consensus 99 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~ 176 (1462)
+.-|+.+.+ .....-+.+++++.++.+.++.+..++.+..+.. ..++......|...... +|.+..++++...|.++
T Consensus 99 ~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d 177 (889)
T KOG4658|consen 99 QRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED 177 (889)
T ss_pred HHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC
Confidence 011111222 2333445566777777777777766655655443 22222223344444444 89999999999999988
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHh-hccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcC--hHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVM-EDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNEN--TFQKAYRLCER 253 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~l~~~ 253 (1462)
+.++++|+||||+||||||+.++++.. ++.+||.++||.||+.++...++.+|+..++........ ..+.+..+.+.
T Consensus 178 ~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 178 DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 779999999999999999999999998 899999999999999999999999999999875442222 24556666676
Q ss_pred HHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceEEccCCCHHHHHHHHHHH
Q 046345 254 LKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNFLIEVLSKDEALQLFECI 333 (1462)
Q Consensus 254 l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 333 (1462)
+ ..+||+|||||||+..+|+.++.|+|. ..+|+||++|||+..|+..++++...++++.|+++|||+||.+.
T Consensus 258 L-~~krfllvLDDIW~~~dw~~I~~~~p~-------~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~ 329 (889)
T KOG4658|consen 258 L-EGKRFLLVLDDIWEEVDWDKIGVPFPS-------RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKK 329 (889)
T ss_pred h-ccCceEEEEecccccccHHhcCCCCCC-------ccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHh
Confidence 6 599999999999999999999999997 77899999999999999766888899999999999999999999
Q ss_pred hCCC--CCCCCchHHHHHHHHHccCCchHHHHHHHHHhcC-CHHHHHHHHHHHhcCccccccchhhHHHHHHHHhhhccC
Q 046345 334 VGDS--AKTSAIQPIADEIVERCEGLPVALSTIANALKSK-SLDFWKDALYRLRSSNAREIHGMRANVFTSIELSYNLLE 410 (1462)
Q Consensus 334 ~~~~--~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~ 410 (1462)
+++. ...+.++++|++|+++|+|+|||+.++|+.|+.+ +..+|+++.+.+......+.+++.+.++.++++||+.||
T Consensus 330 v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~ 409 (889)
T KOG4658|consen 330 VGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP 409 (889)
T ss_pred hccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh
Confidence 9854 2345589999999999999999999999999999 888999999998877555667788999999999999999
Q ss_pred hHHHHHHHHHhcccCCCcccChhHHHHHHhccccccccccHHHHHHHHHHHHHHHHHccccccCC---CCCcEEEcchHH
Q 046345 411 IEEAKSLFLLCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLEEARSRVHTLIDILKASCLLSDGD---AEDEVKMHDIIH 487 (1462)
Q Consensus 411 ~~~~k~cf~~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~mH~lv~ 487 (1462)
+++|.||+|||+||+||.|+++.|+.+|+||||+.+....+.+++.+++++.+|++++|++... ...+|+|||+||
T Consensus 410 -~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvR 488 (889)
T KOG4658|consen 410 -EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVR 488 (889)
T ss_pred -HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHH
Confidence 6899999999999999999999999999999999886666677888899999999999998764 458899999999
Q ss_pred HHHHHHhc-----cceEEecCCchhhH--HHHhhhcccCcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccc
Q 046345 488 VVAVSIAT-----EKLMFNIPNVADLE--KKMEEIIQEDPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQ 560 (1462)
Q Consensus 488 ~~a~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~ 560 (1462)
++|.++|. +++++...+ .+.. .....| ..+||++++++.+..++....+++|++|.+.++.. -...
T Consensus 489 e~al~ias~~~~~~e~~iv~~~-~~~~~~~~~~~~--~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~----~l~~ 561 (889)
T KOG4658|consen 489 EMALWIASDFGKQEENQIVSDG-VGLSEIPQVKSW--NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD----WLLE 561 (889)
T ss_pred HHHHHHhccccccccceEEECC-cCccccccccch--hheeEEEEeccchhhccCCCCCCccceEEEeecch----hhhh
Confidence 99999999 565443322 1111 111222 35899999999999999999999999999998862 0567
Q ss_pred cChhhhhcCCcceEEEecCCC-CCCCCcccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccchhhccccc
Q 046345 561 MSDLFFEGTEGLKVLDFTGIH-FSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTR 639 (1462)
Q Consensus 561 l~~~~f~~l~~Lr~L~Ls~~~-i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~ 639 (1462)
++..+|..|+.||||||++|. +.++|++|++|.|||||+++++.+ +.+|.++++|++
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I----------------------~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI----------------------SHLPSGLGNLKK 619 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc----------------------cccchHHHHHHh
Confidence 888899999999999999765 567888777777777666666554 455555555555
Q ss_pred cCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCcccccccc
Q 046345 640 LSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMEL 719 (1462)
Q Consensus 640 L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L 719 (1462)
|.+|++..+..+..+ ++.+..|.+||+|.+..... ..+...+.++.++.+|+.+.+.......+..-..+.
T Consensus 620 L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~-- 690 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSAL------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT-- 690 (889)
T ss_pred hheeccccccccccc-cchhhhcccccEEEeecccc------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhH--
Confidence 555555554333333 23234455555555543321 012234455555555655555322110000000000
Q ss_pred ceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeec
Q 046345 720 ERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDC 799 (1462)
Q Consensus 720 ~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~ 799 (1462)
.+......+.+.++.... ....+..+++|+.|.+.+|
T Consensus 691 ---------------------------------------~L~~~~~~l~~~~~~~~~----~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 691 ---------------------------------------RLRSLLQSLSIEGCSKRT----LISSLGSLGNLEELSILDC 727 (889)
T ss_pred ---------------------------------------HHHHHhHhhhhcccccce----eecccccccCcceEEEEcC
Confidence 011111122222211111 1222668889999999998
Q ss_pred ccceeeecCcCCCccccc-cccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCE
Q 046345 800 YEILQIVGSVGRDNIRCK-VFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQK 878 (1462)
Q Consensus 800 ~~l~~i~~~~~~~~~~~~-~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~ 878 (1462)
...+......... ... .|+++..+.+.+|..+....+. ...|+|+.|.+..|+.+....+ ....+..+++
T Consensus 728 ~~~e~~~~~~~~~--~~~~~f~~l~~~~~~~~~~~r~l~~~-----~f~~~L~~l~l~~~~~~e~~i~--~~k~~~~l~~ 798 (889)
T KOG4658|consen 728 GISEIVIEWEESL--IVLLCFPNLSKVSILNCHMLRDLTWL-----LFAPHLTSLSLVSCRLLEDIIP--KLKALLELKE 798 (889)
T ss_pred CCchhhccccccc--chhhhHHHHHHHHhhccccccccchh-----hccCcccEEEEecccccccCCC--HHHHhhhccc
Confidence 7654322111111 112 3777888888887776665443 2467888888888887777654 3444555554
Q ss_pred EEEecccCccccccCCCCcccccccceeccCCCccccccccccee-ecccccccccccccCCCcccCCCCceEEEEecCC
Q 046345 879 AEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEEL-ELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCD 957 (1462)
Q Consensus 879 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~ 957 (1462)
+.+ .|.++..+ .+.+.+.+..+....+ .++.|..+.+..||
T Consensus 799 ~i~----------------------------------~f~~~~~l~~~~~l~~l~~i~~~~l----~~~~l~~~~ve~~p 840 (889)
T KOG4658|consen 799 LIL----------------------------------PFNKLEGLRMLCSLGGLPQLYWLPL----SFLKLEELIVEECP 840 (889)
T ss_pred EEe----------------------------------cccccccceeeecCCCCceeEeccc----CccchhheehhcCc
Confidence 222 22333333 2333333333322222 23447778888888
Q ss_pred CcCccCchhhhhhcccCcEEEEecc-cccceecc
Q 046345 958 HLKYVFSHSMVNNLVQIQHLEIRCC-ESMERIVD 990 (1462)
Q Consensus 958 ~L~~l~~~~~~~~l~~L~~L~i~~c-~~l~~~~~ 990 (1462)
++..+ |.+.++.+.+| ..+...|.
T Consensus 841 ~l~~~---------P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 841 KLGKL---------PLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred ccccC---------ccccccceeccccceeecCC
Confidence 76654 67777777776 55555543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.3e-59 Score=617.45 Aligned_cols=479 Identities=22% Similarity=0.320 Sum_probs=329.1
Q ss_pred CccccchhHHHHHHHHHHhc--cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEe---cCC---C------
Q 046345 155 DYEAFDSRMKVFQDVVEAAK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEV---TQT---P------ 220 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~--~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~---~------ 220 (1462)
+...++||+..++++..++. .+++++|+|+||||+||||||+++|++. ..+|++.+|+.. +.. .
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l--~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL--SRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH--hhcCCeEEEeeccccccchhhccccccc
Confidence 44668999999999998875 5678999999999999999999999987 467888877742 111 0
Q ss_pred --C-HHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEE
Q 046345 221 --D-HQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTII 297 (1462)
Q Consensus 221 --~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~Il 297 (1462)
+ ...+..+++..+-......... ...+.+.+ .++|+||||||||+..+|+.+...... .++|++||
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~---~~~~~~~L-~~krvLLVLDdv~~~~~l~~L~~~~~~-------~~~GsrII 328 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYH---LGAMEERL-KHRKVLIFIDDLDDQDVLDALAGQTQW-------FGSGSRII 328 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCC---HHHHHHHH-hCCeEEEEEeCCCCHHHHHHHHhhCcc-------CCCCcEEE
Confidence 0 1233344444332221111111 13344555 589999999999999888887654333 56899999
Q ss_pred EEecchhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCC-CCCCchHHHHHHHHHccCCchHHHHHHHHHhcCCHHHH
Q 046345 298 LTSRNRDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSA-KTSAIQPIADEIVERCEGLPVALSTIANALKSKSLDFW 376 (1462)
Q Consensus 298 vTtr~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~-~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w 376 (1462)
||||++.++. ..+..++|+++.++.++||++|+++|+... .+.++.+++++|+++|+|+|||++++|++|++++.++|
T Consensus 329 iTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W 407 (1153)
T PLN03210 329 VITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDW 407 (1153)
T ss_pred EEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHH
Confidence 9999999983 455668999999999999999999997543 34457899999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccccchhhHHHHHHHHhhhccChHHHHHHHHHhcccCCCcccChhHHHHHHhccccccccccHHHHHH
Q 046345 377 KDALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFLLCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLEEARS 456 (1462)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~~~ 456 (1462)
+.++++++... +..+..+|++||++|+++..|.||+++|.||.+..++ .+..|++.+....
T Consensus 408 ~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~--------- 468 (1153)
T PLN03210 408 MDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV--------- 468 (1153)
T ss_pred HHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------
Confidence 99999987532 3679999999999998645899999999999876553 4667777664321
Q ss_pred HHHHHHHHHHHccccccCCCCCcEEEcchHHHHHHHHhccce------EEecCCchhhHHHHh-hhcccCcEEEEccCCC
Q 046345 457 RVHTLIDILKASCLLSDGDAEDEVKMHDIIHVVAVSIATEKL------MFNIPNVADLEKKME-EIIQEDPIAISLPHRD 529 (1462)
Q Consensus 457 ~~~~~~~~L~~~~l~~~~~~~~~~~mH~lv~~~a~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~r~lsl~~~~ 529 (1462)
...++.|++++|++.. .++|+|||++|+||+++++++. -+.... .+...... ......++++++....
T Consensus 469 --~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~-~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 469 --NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA-KDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred --hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH-HHHHHHHHhCcccceeeEEEeccCc
Confidence 1237789999999764 3579999999999999987642 111111 01101110 1112346777776555
Q ss_pred CccCCc----cCCCCcceEEEEeecCCCC-CccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcc
Q 046345 530 IEVLPE----RLQCPRLDLFLLFTKGDGS-FPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCE 604 (1462)
Q Consensus 530 ~~~l~~----~~~~~~Lr~L~l~~~~~~~-~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~ 604 (1462)
+.++.- ...+++|+.|.+..+.... ......+|..+..-..+||+|.+.++.+..+|..+ .+.+|+.|++++|.
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK 622 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc
Confidence 443221 1356667776665442100 00012344443222345777777777777776665 45667777777776
Q ss_pred cCC-ccccccccCCcEEEecCC-CCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcc
Q 046345 605 LED-IAIVGQLKKLEILSFRDS-DIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 605 l~~-~~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
+.. +..+..+++|++|+++++ .+..+| .++.+++|++|++++|..+..+|.. ++++++|+.|++++|.
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCE 692 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCC
Confidence 666 556666777777777665 355555 3666677777777776666666655 6667777777766654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-38 Score=365.79 Aligned_cols=277 Identities=31% Similarity=0.511 Sum_probs=223.2
Q ss_pred hHHHHHHHHHHhcc--CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC-
Q 046345 162 RMKVFQDVVEAAKD--DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG- 238 (1462)
Q Consensus 162 r~~~~~~l~~~l~~--~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 238 (1462)
|+.++++|.++|.+ ++.++|+|+|+||+||||||+.++++...+.+|+.++|++++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 789999999999999999999999997778999999999999999999999999999988743
Q ss_pred --CCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceE
Q 046345 239 --LNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNF 316 (1462)
Q Consensus 239 --~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~ 316 (1462)
......+....+.+.+ .++++||||||||+...|+.+..+++. ...|++||||||+..++.........+
T Consensus 81 ~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~~~~~l~~~~~~-------~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEEDLEELREPLPS-------FSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp SSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHHHH-------HC-------HHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccchhhh-ccccceeeeeeeccccccccccccccc-------ccccccccccccccccccccccccccc
Confidence 2344556667777776 578999999999999999887766654 567899999999998874333336799
Q ss_pred EccCCCHHHHHHHHHHHhCCCC--CCCCchHHHHHHHHHccCCchHHHHHHHHHhcC-CHHHHHHHHHHHhcCccccccc
Q 046345 317 LIEVLSKDEALQLFECIVGDSA--KTSAIQPIADEIVERCEGLPVALSTIANALKSK-SLDFWKDALYRLRSSNAREIHG 393 (1462)
Q Consensus 317 ~l~~L~~~ea~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~ 393 (1462)
++++|+.+||++||.+.++... ..+..++.+++|+++|+|+||||+++|++|+.+ +..+|+++++++...... ..+
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~ 231 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRD 231 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 9999999999999999997543 455668899999999999999999999999766 788999999887765432 233
Q ss_pred hhhHHHHHHHHhhhccChHHHHHHHHHhcccCCCcccChhHHHHHHhcccccccc
Q 046345 394 MRANVFTSIELSYNLLEIEEAKSLFLLCGLYSEGHAIQVPSLLRYGMGLCLFENV 448 (1462)
Q Consensus 394 ~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~fp~~~~i~~~~Li~~W~a~g~~~~~ 448 (1462)
....+..++.+||+.||+ ++|+||.|||+||+++.|+++.|+++|+++|++...
T Consensus 232 ~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 568899999999999997 899999999999999999999999999999998753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=4.4e-31 Score=355.39 Aligned_cols=301 Identities=15% Similarity=0.107 Sum_probs=157.4
Q ss_pred cCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeec
Q 046345 846 SFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELEL 925 (1462)
Q Consensus 846 ~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 925 (1462)
.+++|+.|++++|.-...+|. .+.++++|+.|+++++.....++ .....+++|+.|++
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~--------------------~~~~~l~~L~~L~L 339 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPE--LVIQLQNLEILHLFSNNFTGKIP--------------------VALTSLPRLQVLQL 339 (968)
T ss_pred hccCcCEEECcCCeeccCCCh--hHcCCCCCcEEECCCCccCCcCC--------------------hhHhcCCCCCEEEC
Confidence 466777777777643333332 55677888888887764221111 11235677777777
Q ss_pred ccccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEecccccceecccCCCCCCcccccccc
Q 046345 926 KRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELK 1005 (1462)
Q Consensus 926 ~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~ 1005 (1462)
++|.-...++. .+..+++|+.|++++|.....+ +..+..+++|+.|++++|+....+|. .+.
T Consensus 340 ~~n~l~~~~p~----~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~p~------------~~~ 401 (968)
T PLN00113 340 WSNKFSGEIPK----NLGKHNNLTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPK------------SLG 401 (968)
T ss_pred cCCCCcCcCCh----HHhCCCCCcEEECCCCeeEeeC--ChhHhCcCCCCEEECcCCEecccCCH------------HHh
Confidence 77632222222 1335667777777766532222 33455667777777776654444433 355
Q ss_pred cccccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCcceeeccccCCcccccccccccccccchhhcccc
Q 046345 1006 VFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISSEDNAHTEMQTQPFFDEKLSIYYAI 1085 (1462)
Q Consensus 1006 ~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 1085 (1462)
.+++|+.|++.+|.--..++. .+..+++|+.|+++++.-...++.
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~-------~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------- 446 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPS-------EFTKLPLVYFLDISNNNLQGRINS---------------------------- 446 (968)
T ss_pred CCCCCCEEECcCCEeeeECCh-------hHhcCCCCCEEECcCCcccCccCh----------------------------
Confidence 666777777766543222222 144566666666666532111110
Q ss_pred CcccccccccccccccCCcEEEEecCCCcccccCcCcCCCCCccEEEEcccccceeeeccccccccCceeeecccccccc
Q 046345 1086 NLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIAFNELKFLEL 1165 (1462)
Q Consensus 1086 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l 1165 (1462)
.+ ..+++|+.|++++|..... .|..+ ..++|+.|++++|.....++.... .+++|+.|++
T Consensus 447 --------~~--~~l~~L~~L~L~~n~~~~~-~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~--------~l~~L~~L~L 506 (968)
T PLN00113 447 --------RK--WDMPSLQMLSLARNKFFGG-LPDSF-GSKRLENLDLSRNQFSGAVPRKLG--------SLSELMQLKL 506 (968)
T ss_pred --------hh--ccCCCCcEEECcCceeeee-cCccc-ccccceEEECcCCccCCccChhhh--------hhhccCEEEC
Confidence 00 1245666666666544332 33322 345666666666543323322111 2456666666
Q ss_pred CcCccccccccCCccccCCCcceEeeecccCcccccCCccccccceeEEeeeccccccccccccchhhhHHHHHHHhhcc
Q 046345 1166 DKLPRLRSFCLENYTLEFPSLERFSMKECRNMKTFSQGALFTPKLCKVQMIENEEDDLHHWEGNLNSTIQKHYEEMCLNN 1245 (1462)
Q Consensus 1166 ~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~l~~~~~~~~~~~~l~~ 1245 (1462)
++|.-...++. .+.++++|+.|++++|.-....|..+..+++|+.|++++|. +....|..+.. +++
T Consensus 507 s~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~----------l~~~~p~~l~~--l~~ 572 (968)
T PLN00113 507 SENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ----------LSGEIPKNLGN--VES 572 (968)
T ss_pred cCCcceeeCCh--HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc----------ccccCChhHhc--Ccc
Confidence 66533333322 34455666666666655555555555555666666666655 22233333322 556
Q ss_pred ceEEEEecCC
Q 046345 1246 LEVLEVRNCD 1255 (1462)
Q Consensus 1246 L~~L~i~~c~ 1255 (1462)
|+.|++++|+
T Consensus 573 L~~l~ls~N~ 582 (968)
T PLN00113 573 LVQVNISHNH 582 (968)
T ss_pred cCEEeccCCc
Confidence 6666666666
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=6.4e-31 Score=353.78 Aligned_cols=507 Identities=18% Similarity=0.179 Sum_probs=300.8
Q ss_pred CcEEEEccCCCCccCCc--cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCC-CCCcccCCCCcC
Q 046345 519 DPIAISLPHRDIEVLPE--RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFS-SLPSSLGRLTSL 595 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L 595 (1462)
.++.+.+.++.+..... ...+++|++|++++|.. ...+|..+|..+++||+|+|++|.+. .+|. +.+.+|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~-----~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L 142 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-----SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc-----CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence 47777777776654322 24577888888877763 34677777778888888888888775 3453 457788
Q ss_pred cEEEecCcccCC--ccccccccCCcEEEecCCCCC-ccchhhccccccCEEccCCcccccccCccccccccccceeeccC
Q 046345 596 QTLCLHWCELED--IAIVGQLKKLEILSFRDSDIK-ELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGG 672 (1462)
Q Consensus 596 r~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 672 (1462)
++|+|++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.-...+|.. ++++++|++|++++
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~ 221 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGY 221 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcC
Confidence 888888887764 677888888888888888765 67777888888888888877433344544 77888888888877
Q ss_pred cccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchh
Q 046345 673 SFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVS 752 (1462)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 752 (1462)
|... ...+..++.+++|++|+++.|......+
T Consensus 222 n~l~--------~~~p~~l~~l~~L~~L~L~~n~l~~~~p---------------------------------------- 253 (968)
T PLN00113 222 NNLS--------GEIPYEIGGLTSLNHLDLVYNNLTGPIP---------------------------------------- 253 (968)
T ss_pred CccC--------CcCChhHhcCCCCCEEECcCceeccccC----------------------------------------
Confidence 6542 2344567777778877777654431110
Q ss_pred HHHHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceeccccccc
Q 046345 753 ILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLIN 832 (1462)
Q Consensus 753 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~ 832 (1462)
..+ ..+++|+.|.+.++........ .+..+++|++|++++|.-...++. ..
T Consensus 254 --~~l-~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~-------~~---------------- 304 (968)
T PLN00113 254 --SSL-GNLKNLQYLFLYQNKLSGPIPP---SIFSLQKLISLDLSDNSLSGEIPE-------LV---------------- 304 (968)
T ss_pred --hhH-hCCCCCCEEECcCCeeeccCch---hHhhccCcCEEECcCCeeccCCCh-------hH----------------
Confidence 000 0013334444433221111111 123455556666555432111110 11
Q ss_pred ccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCc
Q 046345 833 LETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPI 912 (1462)
Q Consensus 833 L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1462)
..+++|+.|++.+|.-...+|. .+..+++|+.|++++|.....++ .
T Consensus 305 ------------~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p--------------------~ 350 (968)
T PLN00113 305 ------------IQLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSGEIP--------------------K 350 (968)
T ss_pred ------------cCCCCCcEEECCCCccCCcCCh--hHhcCCCCCEEECcCCCCcCcCC--------------------h
Confidence 2344555555555432222222 34455566666665543211111 1
Q ss_pred ccccccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEecccccceecccC
Q 046345 913 QKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNT 992 (1462)
Q Consensus 913 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 992 (1462)
....+++|+.|+++++.-...++.. +..+++|+.|++.+|.....+ +..+..+++|+.|++++|.....+|.
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~~----~~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~L~~L~L~~n~l~~~~p~-- 422 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPEG----LCSSGNLFKLILFSNSLEGEI--PKSLGACRSLRRVRLQDNSFSGELPS-- 422 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCChh----HhCcCCCCEEECcCCEecccC--CHHHhCCCCCCEEECcCCEeeeECCh--
Confidence 1123455666666655221122211 224566777777666533322 34456677777777777654444433
Q ss_pred CCCCCcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCcceeeccccCCcccccccccc
Q 046345 993 GLGRDEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISSEDNAHTEMQTQ 1072 (1462)
Q Consensus 993 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~ 1072 (1462)
.+..+++|+.|+++++.--..++. .+..+++|+.|++++|.-...+|...
T Consensus 423 ----------~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~~n~~~~~~p~~~------------- 472 (968)
T PLN00113 423 ----------EFTKLPLVYFLDISNNNLQGRINS-------RKWDMPSLQMLSLARNKFFGGLPDSF------------- 472 (968)
T ss_pred ----------hHhcCCCCCEEECcCCcccCccCh-------hhccCCCCcEEECcCceeeeecCccc-------------
Confidence 455677777777776542222221 13346778888888775433332210
Q ss_pred cccccchhhccccCcccccccccccccccCCcEEEEecCCCcccccCcCcCCCCCccEEEEcccccceeeeccccccccC
Q 046345 1073 PFFDEKLSIYYAINLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFKLSYCKKIEEIIGHVGEEVKG 1152 (1462)
Q Consensus 1073 ~~~~~~l~i~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~ 1152 (1462)
..++|+.|++++|. +....|..+..+++|+.|++++|.....+|...+
T Consensus 473 --------------------------~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----- 520 (968)
T PLN00113 473 --------------------------GSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS----- 520 (968)
T ss_pred --------------------------ccccceEEECcCCc-cCCccChhhhhhhccCEEECcCCcceeeCChHHc-----
Confidence 13568888886654 4444566677888888888888754444544332
Q ss_pred ceeeeccccccccCcCccccccccCCccccCCCcceEeeecccCcccccCCccccccceeEEeeecc
Q 046345 1153 NHIAFNELKFLELDKLPRLRSFCLENYTLEFPSLERFSMKECRNMKTFSQGALFTPKLCKVQMIENE 1219 (1462)
Q Consensus 1153 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~ 1219 (1462)
.+++|+.|++++|.-...++. .+.++++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 521 ---~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 521 ---SCKKLVSLDLSHNQLSGQIPA--SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred ---CccCCCEEECCCCcccccCCh--hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 367888888887754444433 46688999999999998888899888888999999999988
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=9.3e-21 Score=253.79 Aligned_cols=320 Identities=18% Similarity=0.247 Sum_probs=209.7
Q ss_pred cCcEEEEecccccceecccCCCCCCcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCc
Q 046345 973 QIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIM 1052 (1462)
Q Consensus 973 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 1052 (1462)
+|+.|.+.++ .++.+|. .+ .+.+|+.|++.++ ++..++.. +..+++|+.|++++|.++
T Consensus 590 ~Lr~L~~~~~-~l~~lP~------------~f-~~~~L~~L~L~~s-~l~~L~~~-------~~~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 590 KLRLLRWDKY-PLRCMPS------------NF-RPENLVKLQMQGS-KLEKLWDG-------VHSLTGLRNIDLRGSKNL 647 (1153)
T ss_pred ccEEEEecCC-CCCCCCC------------cC-CccCCcEEECcCc-cccccccc-------cccCCCCCEEECCCCCCc
Confidence 4666666654 2444443 12 3456666666663 35544432 334667777777766655
Q ss_pred ceeeccccCCcccccccccccccccchhhccccCcccccccccccccccCCcEEEEecCCCcccccCcCcCCCCCccEEE
Q 046345 1053 LRFISTISSEDNAHTEMQTQPFFDEKLSIYYAINLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFK 1132 (1462)
Q Consensus 1053 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~ 1132 (1462)
+.+|.. ..+++|+.|++.+|..+.. +|..++.+++|+.|+
T Consensus 648 ~~ip~l---------------------------------------s~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 648 KEIPDL---------------------------------------SMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLD 687 (1153)
T ss_pred CcCCcc---------------------------------------ccCCcccEEEecCCCCccc-cchhhhccCCCCEEe
Confidence 544321 1246677777777777765 366677777888888
Q ss_pred EcccccceeeeccccccccCceeeeccccccccCcCccccccccCCccccCCCcceEeeecccCcccccCCcccccccee
Q 046345 1133 LSYCKKIEEIIGHVGEEVKGNHIAFNELKFLELDKLPRLRSFCLENYTLEFPSLERFSMKECRNMKTFSQGALFTPKLCK 1212 (1462)
Q Consensus 1133 l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 1212 (1462)
+++|++++.+|... .+++|+.|.+++|..++.++. ..++|+.|++.++ .++.+|... .+++|+.
T Consensus 688 L~~c~~L~~Lp~~i---------~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~ 751 (1153)
T PLN03210 688 MSRCENLEILPTGI---------NLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDET-AIEEFPSNL-RLENLDE 751 (1153)
T ss_pred CCCCCCcCccCCcC---------CCCCCCEEeCCCCCCcccccc-----ccCCcCeeecCCC-ccccccccc-ccccccc
Confidence 88887777776533 267778888888877766653 2457788888775 466777654 4578888
Q ss_pred EEeeeccccccccccccchhhhHHHHHHHhhccceEEEEecCCCcceeeeeeccccccCCccccCcccCeEEeecCCCcc
Q 046345 1213 VQMIENEEDDLHHWEGNLNSTIQKHYEEMCLNNLEVLEVRNCDSLEEVLHLEELNVDEEHFGPLFPTLLDLKLIDLPRLK 1292 (1462)
Q Consensus 1213 L~l~~c~~~~~~~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 1292 (1462)
|.+.+|....++.. +....+ ..... +++|++|++++|+.+.+++..-. .+++|+.|++++|++++
T Consensus 752 L~l~~~~~~~l~~~---~~~l~~-~~~~~-~~sL~~L~Ls~n~~l~~lP~si~----------~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 752 LILCEMKSEKLWER---VQPLTP-LMTML-SPSLTRLFLSDIPSLVELPSSIQ----------NLHKLEHLEIENCINLE 816 (1153)
T ss_pred ccccccchhhcccc---ccccch-hhhhc-cccchheeCCCCCCccccChhhh----------CCCCCCEEECCCCCCcC
Confidence 88887663322221 111111 11222 67999999999997776554211 68999999999999999
Q ss_pred eeccCCCccccCCCcceeeeecCCccceecc--CCcceEEeccCCCCcccccccccCCcCcccccccccccccccceeec
Q 046345 1293 RFCNFTENIIGLPELSNLTIENCPNIETFIS--NSTSILHMTANNKGHQEITSEENFPLAHIQPLFDGKVAFPRLNALKL 1370 (1462)
Q Consensus 1293 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~--~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 1370 (1462)
.+|... . +++|+.|++++|+.++.+|. .+|++|++++| .+..+|. .+..+++|+.|++
T Consensus 817 ~LP~~~-~---L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n--------~i~~iP~--------si~~l~~L~~L~L 876 (1153)
T PLN03210 817 TLPTGI-N---LESLESLDLSGCSRLRTFPDISTNISDLNLSRT--------GIEEVPW--------WIEKFSNLSFLDM 876 (1153)
T ss_pred eeCCCC-C---ccccCEEECCCCCccccccccccccCEeECCCC--------CCccChH--------HHhcCCCCCEEEC
Confidence 998754 3 79999999999999998874 47999999986 2333442 2478899999999
Q ss_pred CcccchhhhccccccccccccccCCccccccCCcceEee
Q 046345 1371 SRLPKVLHLWSENLESNKVFTKLQTPEISECKNLWDLEV 1409 (1462)
Q Consensus 1371 ~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~~~L~~l~i 1409 (1462)
++|++|+.++.. ...+++|+.|++.+|++|+.+.+
T Consensus 877 ~~C~~L~~l~~~----~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 877 NGCNNLQRVSLN----ISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCCCCcCccCcc----cccccCCCeeecCCCcccccccC
Confidence 999999988331 22344555555555555554433
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=8e-21 Score=211.09 Aligned_cols=369 Identities=15% Similarity=0.141 Sum_probs=242.3
Q ss_pred CCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--ccccccccC
Q 046345 539 CPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKK 616 (1462)
Q Consensus 539 ~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~ 616 (1462)
.+..++|++++|. +.++.-.+|.++++|+.+.+.+|.++.+|.......||+.|+|.+|.|.. -+.+..+..
T Consensus 77 p~~t~~LdlsnNk------l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK------LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred ccceeeeeccccc------cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 4567789988887 67777788899999999999999999999877777889999999999887 477888899
Q ss_pred CcEEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCC
Q 046345 617 LEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELS 695 (1462)
Q Consensus 617 L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~ 695 (1462)
||.||||.|.|+++|.. +..-.++++|+|++| .++.+..+.|..|.+|-+|.++.|.+...+ ...+++|+
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp--------~r~Fk~L~ 221 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLP--------QRSFKRLP 221 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccC--------HHHhhhcc
Confidence 99999999999888753 445578999999997 788888887889999999999888764433 36778888
Q ss_pred CCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCc
Q 046345 696 KLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGV 775 (1462)
Q Consensus 696 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 775 (1462)
+|+.|++..|.+....- .. ....++++.++++.+...++.+++
T Consensus 222 ~L~~LdLnrN~irive~---------------lt----FqgL~Sl~nlklqrN~I~kL~DG~------------------ 264 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEG---------------LT----FQGLPSLQNLKLQRNDISKLDDGA------------------ 264 (873)
T ss_pred hhhhhhccccceeeehh---------------hh----hcCchhhhhhhhhhcCcccccCcc------------------
Confidence 99988888776532210 00 011122222222222111111111
Q ss_pred ccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEE
Q 046345 776 QNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKV 855 (1462)
Q Consensus 776 ~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l 855 (1462)
+..+.++++|+|.... +..+... ..-.+.+|+.|++++ +.++.+....+ ...++|++|++
T Consensus 265 ---------Fy~l~kme~l~L~~N~-l~~vn~g------~lfgLt~L~~L~lS~-NaI~rih~d~W---sftqkL~~LdL 324 (873)
T KOG4194|consen 265 ---------FYGLEKMEHLNLETNR-LQAVNEG------WLFGLTSLEQLDLSY-NAIQRIHIDSW---SFTQKLKELDL 324 (873)
T ss_pred ---------eeeecccceeecccch-hhhhhcc------cccccchhhhhccch-hhhheeecchh---hhcccceeEec
Confidence 2345666666666422 2222110 223456677777766 45555543332 45778888888
Q ss_pred ecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeeccccccccccc
Q 046345 856 KACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLANIDKLW 935 (1462)
Q Consensus 856 ~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~ 935 (1462)
+++ .++.+++ +.+..|..|++|.++.. .+..+-... +..+.+|++|+|+++.--..+.
T Consensus 325 s~N-~i~~l~~-~sf~~L~~Le~LnLs~N-si~~l~e~a-------------------f~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 325 SSN-RITRLDE-GSFRVLSQLEELNLSHN-SIDHLAEGA-------------------FVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred ccc-ccccCCh-hHHHHHHHhhhhccccc-chHHHHhhH-------------------HHHhhhhhhhcCcCCeEEEEEe
Confidence 874 6777665 46677888888888873 344433221 1456788888888873222222
Q ss_pred ccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEecccccceecccCCCCCCcccccccccccccceeee
Q 046345 936 PDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQL 1015 (1462)
Q Consensus 936 ~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 1015 (1462)
+... .+..+++|++|.+.+. +++.+ +...+..++.|++|++.++ -+.++... ++..+ .|++|.+
T Consensus 383 Daa~-~f~gl~~LrkL~l~gN-qlk~I-~krAfsgl~~LE~LdL~~N-aiaSIq~n-----------AFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 383 DAAV-AFNGLPSLRKLRLTGN-QLKSI-PKRAFSGLEALEHLDLGDN-AIASIQPN-----------AFEPM-ELKELVM 446 (873)
T ss_pred cchh-hhccchhhhheeecCc-eeeec-chhhhccCcccceecCCCC-cceeeccc-----------ccccc-hhhhhhh
Confidence 2221 2446888888888775 46665 5566788888888888874 34444221 44445 6777766
Q ss_pred cC
Q 046345 1016 TG 1017 (1462)
Q Consensus 1016 ~~ 1017 (1462)
..
T Consensus 447 nS 448 (873)
T KOG4194|consen 447 NS 448 (873)
T ss_pred cc
Confidence 54
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=6.2e-21 Score=211.98 Aligned_cols=345 Identities=20% Similarity=0.271 Sum_probs=198.4
Q ss_pred ceEEEecCCCCCCC-CcccCCCCcCcEEEecCcccCC-ccccccccCCcEEEecCCCCCccc-hhhccccccCEEccCCc
Q 046345 572 LKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHWCELED-IAIVGQLKKLEILSFRDSDIKELP-LEIGLLTRLSLLDLSDC 648 (1462)
Q Consensus 572 Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 648 (1462)
-+.||+++|.+..+ +..|.+++||+.+++..|.++. |...+...||+.|+|.+|.|+++- .++..++.||.|||+.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 45577777777665 4456777777777777777776 444445556777777777776663 34666777777777776
Q ss_pred ccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEcc
Q 046345 649 WSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGK 728 (1462)
Q Consensus 649 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~ 728 (1462)
.+..+|...+..-.++++|++.+|.+... ....+..+.+|-.|.++.|.++.+|.
T Consensus 160 -~is~i~~~sfp~~~ni~~L~La~N~It~l--------~~~~F~~lnsL~tlkLsrNrittLp~---------------- 214 (873)
T KOG4194|consen 160 -LISEIPKPSFPAKVNIKKLNLASNRITTL--------ETGHFDSLNSLLTLKLSRNRITTLPQ---------------- 214 (873)
T ss_pred -hhhcccCCCCCCCCCceEEeecccccccc--------ccccccccchheeeecccCcccccCH----------------
Confidence 56666655566666677777766654221 11334445555555565555544332
Q ss_pred ccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecC
Q 046345 729 KWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGS 808 (1462)
Q Consensus 729 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~ 808 (1462)
..+. .+|+|+.|+|.... ++.+-+.
T Consensus 215 ---------------------------r~Fk---------------------------~L~~L~~LdLnrN~-irive~l 239 (873)
T KOG4194|consen 215 ---------------------------RSFK---------------------------RLPKLESLDLNRNR-IRIVEGL 239 (873)
T ss_pred ---------------------------HHhh---------------------------hcchhhhhhccccc-eeeehhh
Confidence 1222 23333333333211 1111000
Q ss_pred cCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCcc
Q 046345 809 VGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLE 888 (1462)
Q Consensus 809 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~ 888 (1462)
....+++|+.|.+.. +++..+..+.|- .+.++++|+++.+ ++..+.. +++-+|++|+.|++++. .+.
T Consensus 240 ------tFqgL~Sl~nlklqr-N~I~kL~DG~Fy---~l~kme~l~L~~N-~l~~vn~-g~lfgLt~L~~L~lS~N-aI~ 306 (873)
T KOG4194|consen 240 ------TFQGLPSLQNLKLQR-NDISKLDDGAFY---GLEKMEHLNLETN-RLQAVNE-GWLFGLTSLEQLDLSYN-AIQ 306 (873)
T ss_pred ------hhcCchhhhhhhhhh-cCcccccCccee---eecccceeecccc-hhhhhhc-ccccccchhhhhccchh-hhh
Confidence 112334444444443 333333333332 2455666666553 4444432 35566777777877763 344
Q ss_pred ccccCCCCcccccccceeccCCCcccccccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhh
Q 046345 889 MIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMV 968 (1462)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~ 968 (1462)
.+... .....++|+.|+|+++ .++++..+.+. .+..|+.|.+++.. +..+ ....+
T Consensus 307 rih~d-------------------~WsftqkL~~LdLs~N-~i~~l~~~sf~---~L~~Le~LnLs~Ns-i~~l-~e~af 361 (873)
T KOG4194|consen 307 RIHID-------------------SWSFTQKLKELDLSSN-RITRLDEGSFR---VLSQLEELNLSHNS-IDHL-AEGAF 361 (873)
T ss_pred eeecc-------------------hhhhcccceeEecccc-ccccCChhHHH---HHHHhhhhcccccc-hHHH-HhhHH
Confidence 33222 1245678888888887 67666655443 56778888887754 4444 34567
Q ss_pred hhcccCcEEEEecccccceecccCCCCCCcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEec
Q 046345 969 NNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIID 1048 (1462)
Q Consensus 969 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~ 1048 (1462)
..+.+|++|+++.+. +.-..++ ....+.++++|+.|.+.| +++++++.-+ +.++++|++|++.+
T Consensus 362 ~~lssL~~LdLr~N~-ls~~IED--------aa~~f~gl~~LrkL~l~g-Nqlk~I~krA------fsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNE-LSWCIED--------AAVAFNGLPSLRKLRLTG-NQLKSIPKRA------FSGLEALEHLDLGD 425 (873)
T ss_pred HHhhhhhhhcCcCCe-EEEEEec--------chhhhccchhhhheeecC-ceeeecchhh------hccCcccceecCCC
Confidence 778888888888743 3322221 111567788888888888 6788877654 55688888888877
Q ss_pred cC
Q 046345 1049 CH 1050 (1462)
Q Consensus 1049 c~ 1050 (1462)
..
T Consensus 426 Na 427 (873)
T KOG4194|consen 426 NA 427 (873)
T ss_pred Cc
Confidence 54
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.4e-21 Score=229.64 Aligned_cols=124 Identities=26% Similarity=0.327 Sum_probs=104.6
Q ss_pred ceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-ccccccccCCcEE
Q 046345 542 LDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IAIVGQLKKLEIL 620 (1462)
Q Consensus 542 Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L 620 (1462)
+..|.+..|. +...|-.+..+.-+|++||+++|.+...|..+..+.+|+.|+++.|.+.. |.++.++.+|++|
T Consensus 23 ~~~ln~~~N~------~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 23 LQILNLRRNS------LLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYL 96 (1081)
T ss_pred HHhhhccccc------cccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhh
Confidence 5555555554 34445556666667999999999999999999999999999999999988 8899999999999
Q ss_pred EecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCc
Q 046345 621 SFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGS 673 (1462)
Q Consensus 621 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 673 (1462)
+|.+|.+..+|.++..+++|++|++++| .+..+|.- +..++.+..+..++|
T Consensus 97 nL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 97 NLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred eeccchhhcCchhHHhhhcccccccchh-ccCCCchh-HHhhhHHHHHhhhcc
Confidence 9999999999999999999999999997 67777766 788888888887776
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=1.9e-22 Score=214.45 Aligned_cols=106 Identities=28% Similarity=0.450 Sum_probs=60.3
Q ss_pred hcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEcc
Q 046345 567 EGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDL 645 (1462)
Q Consensus 567 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 645 (1462)
..+..|.||++.+|...++|.+++.+..++.|+.++|+++. |+.++.+..|+.|+.++|.+.++|++++.+..|..|+.
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 45555555555555555555555555555555555555555 55555555555555555555555555555555555555
Q ss_pred CCcccccccCccccccccccceeeccCcc
Q 046345 646 SDCWSLEVIAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 646 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
.+| ++..+|++ ++++.+|..|++.+|.
T Consensus 145 ~~N-~i~slp~~-~~~~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 145 TNN-QISSLPED-MVNLSKLSKLDLEGNK 171 (565)
T ss_pred ccc-ccccCchH-HHHHHHHHHhhccccc
Confidence 554 45555555 4555555555555444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=3.3e-22 Score=212.54 Aligned_cols=180 Identities=29% Similarity=0.360 Sum_probs=147.2
Q ss_pred hcccCcEEEEccCCCCccCCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCC
Q 046345 515 IIQEDPIAISLPHRDIEVLPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLT 593 (1462)
Q Consensus 515 ~~~~~~r~lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~ 593 (1462)
|.+.+...+-+..|++..+... ..+..+.+|.++++. ...+|.. ++++..+..|+.++|.+..+|..++.+.
T Consensus 42 W~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~------l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~ 114 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK------LSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLI 114 (565)
T ss_pred hhhcchhhhhhccCchhhccHhhhcccceeEEEeccch------hhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhh
Confidence 4444455566677777665443 457778888888887 5777776 4788889999999999999999999999
Q ss_pred cCcEEEecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccC
Q 046345 594 SLQTLCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGG 672 (1462)
Q Consensus 594 ~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 672 (1462)
+|+.|+.++|.+.. +++++.+..|..|+..+|+++.+|.+++.+.+|..|++.+| .++.+|+..+. ++.|++|++..
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNS 192 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccch
Confidence 99999999999888 89999999999999999999999999999999999999997 78888888544 99999999876
Q ss_pred cccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCc
Q 046345 673 SFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQ 712 (1462)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 712 (1462)
|.. +..+.+++.+..|..|++..|.+..+|+
T Consensus 193 N~L---------~tlP~~lg~l~~L~~LyL~~Nki~~lPe 223 (565)
T KOG0472|consen 193 NLL---------ETLPPELGGLESLELLYLRRNKIRFLPE 223 (565)
T ss_pred hhh---------hcCChhhcchhhhHHHHhhhcccccCCC
Confidence 654 2456788888888888888887776665
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=4.8e-21 Score=213.47 Aligned_cols=171 Identities=19% Similarity=0.241 Sum_probs=109.9
Q ss_pred CcEEEEccCCCCc--cCCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcC
Q 046345 519 DPIAISLPHRDIE--VLPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSL 595 (1462)
Q Consensus 519 ~~r~lsl~~~~~~--~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L 595 (1462)
-+|.+.+++|+.. .+|+. ..++.++-|.+.... +..+|+. ++.+.+|..|.+++|.+.++-..++.|+.|
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~------L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK------LEQVPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhh------hhhChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 3566666766664 35544 245666666665444 4556655 466677777777777766666666667777
Q ss_pred cEEEecCcccCC---ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccC
Q 046345 596 QTLCLHWCELED---IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGG 672 (1462)
Q Consensus 596 r~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 672 (1462)
|.+++++|+++. |..|.+|..|.+||||+|.+++.|.++.+-+++-.|+|++| ++..+|...+.+|+.|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhcccc
Confidence 777777777665 66677777777777777777777777777777777777775 56667766666777777777666
Q ss_pred cccccccccCCCccchHhhhcCCCCcEEEEEeec
Q 046345 673 SFSQWDKVEGGSNARLDELKELSKLTTLEIHVRD 706 (1462)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 706 (1462)
|... ..+..+..+.+|++|.++.|.
T Consensus 160 NrLe---------~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 160 NRLE---------MLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred chhh---------hcCHHHHHHhhhhhhhcCCCh
Confidence 6542 234455556666666665443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=1.2e-20 Score=210.30 Aligned_cols=174 Identities=18% Similarity=0.265 Sum_probs=98.4
Q ss_pred CcEEEEccCCCCccCCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 519 DPIAISLPHRDIEVLPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
+..|+++.+|.+.++..- ..++.||++.+..|... ...||.++| +|+.|.+||||+|.+.+.|..+..-+++-+
T Consensus 56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK----nsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK----NSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc----cCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 356666666665554432 45666666666655421 234666654 466666666666666666666666666666
Q ss_pred EEecCcccCC-c-cccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 598 LCLHWCELED-I-AIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 598 L~L~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
|+|++|+|.. | +-+.+|+.|-+||||+|.+..+|+.+..|.+|++|.|++|+ +..+.-..+-.+++|++|.+++...
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccc
Confidence 6666666666 4 33456666666666666666666666666666666666653 2221111133455556666555432
Q ss_pred ccccccCCCccchHhhhcCCCCcEEEEEee
Q 046345 676 QWDKVEGGSNARLDELKELSKLTTLEIHVR 705 (1462)
Q Consensus 676 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~ 705 (1462)
. ....+..+..+.||+.++++.|
T Consensus 210 T-------l~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 210 T-------LDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred h-------hhcCCCchhhhhhhhhcccccc
Confidence 1 1123344445555555555543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-20 Score=221.66 Aligned_cols=416 Identities=19% Similarity=0.185 Sum_probs=227.0
Q ss_pred CCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-ccccccccCC
Q 046345 539 CPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IAIVGQLKKL 617 (1462)
Q Consensus 539 ~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L 617 (1462)
+-+|++|++++|..++| |.. +..+.+|+.|+++.|.|.++|.+.+++.+|++|.|.+|.+.. |.++..+++|
T Consensus 44 ~v~L~~l~lsnn~~~~f------p~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl 116 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSF------PIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNL 116 (1081)
T ss_pred eeeeEEeeccccccccC------Cch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcc
Confidence 33499999999985444 333 467889999999999999999999999999999999999888 8999999999
Q ss_pred cEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCC
Q 046345 618 EILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKL 697 (1462)
Q Consensus 618 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L 697 (1462)
++|++++|.+..+|.-+..++.+..+..++|..+..++. .. .+++++..+... ...+.++..+++
T Consensus 117 ~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~--------~~~~~~i~~l~~- 181 (1081)
T KOG0618|consen 117 QYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG--------GSFLIDIYNLTH- 181 (1081)
T ss_pred cccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc--------cchhcchhhhhe-
Confidence 999999999999999999999999999998844444333 22 666666554431 123344444444
Q ss_pred cEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCccc
Q 046345 698 TTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQN 777 (1462)
Q Consensus 698 ~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 777 (1462)
.|++..|.+. ......+.+|+.+...... .........+++.+....+..... .......+++++.++.. ....
T Consensus 182 -~ldLr~N~~~-~~dls~~~~l~~l~c~rn~-ls~l~~~g~~l~~L~a~~n~l~~~--~~~p~p~nl~~~dis~n-~l~~ 255 (1081)
T KOG0618|consen 182 -QLDLRYNEME-VLDLSNLANLEVLHCERNQ-LSELEISGPSLTALYADHNPLTTL--DVHPVPLNLQYLDISHN-NLSN 255 (1081)
T ss_pred -eeecccchhh-hhhhhhccchhhhhhhhcc-cceEEecCcchheeeeccCcceee--ccccccccceeeecchh-hhhc
Confidence 5666666554 1111222333322210000 000000011111111111110000 00000122333333211 1111
Q ss_pred ccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEec
Q 046345 778 VVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKA 857 (1462)
Q Consensus 778 ~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~ 857 (1462)
+..+ ++.+++|+.|.+.... +..++. ......+|+.|.+.. ..++.++... +.+.+|+.|++..
T Consensus 256 lp~w---i~~~~nle~l~~n~N~-l~~lp~-------ri~~~~~L~~l~~~~-nel~yip~~l----e~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 256 LPEW---IGACANLEALNANHNR-LVALPL-------RISRITSLVSLSAAY-NELEYIPPFL----EGLKSLRTLDLQS 319 (1081)
T ss_pred chHH---HHhcccceEecccchh-HHhhHH-------HHhhhhhHHHHHhhh-hhhhhCCCcc----cccceeeeeeehh
Confidence 1111 2233344444433221 111110 111222344444333 2233332111 2344555555544
Q ss_pred CCCCCccCCHHHHHHhcc-CCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeecccccccccccc
Q 046345 858 CEKLKHLFSFSMAKNLLR-LQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLANIDKLWP 936 (1462)
Q Consensus 858 c~~L~~l~~~~~~~~L~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 936 (1462)
+ ++..+|.. .+.-+.. |..|..+. ..+...+. .....++.|+.|.+.++ .++ +
T Consensus 320 N-~L~~lp~~-~l~v~~~~l~~ln~s~-n~l~~lp~-------------------~~e~~~~~Lq~LylanN-~Lt---d 373 (1081)
T KOG0618|consen 320 N-NLPSLPDN-FLAVLNASLNTLNVSS-NKLSTLPS-------------------YEENNHAALQELYLANN-HLT---D 373 (1081)
T ss_pred c-cccccchH-HHhhhhHHHHHHhhhh-cccccccc-------------------ccchhhHHHHHHHHhcC-ccc---c
Confidence 2 34444331 1111111 22222222 11111110 01145778888888887 333 2
Q ss_pred cCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEecccccceecccCCCCCCcccccccccccccceeeec
Q 046345 937 DQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLT 1016 (1462)
Q Consensus 937 ~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 1016 (1462)
..++.+.++++|+.|++++.. |.. +|...+.++..|++|+++| ++++.+|. .+..++.|++|...
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNr-L~~-fpas~~~kle~LeeL~LSG-NkL~~Lp~------------tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNR-LNS-FPASKLRKLEELEELNLSG-NKLTTLPD------------TVANLGRLHTLRAH 438 (1081)
T ss_pred cchhhhccccceeeeeecccc-ccc-CCHHHHhchHHhHHHhccc-chhhhhhH------------HHHhhhhhHHHhhc
Confidence 333345688889999998764 444 4677788888899999988 67888875 46678888888776
Q ss_pred CCccccccccCCcccccccccCCCccEEEEec
Q 046345 1017 GLTQLTSFANMGHFHSHSVVEFPSLLKLEIID 1048 (1462)
Q Consensus 1017 ~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~ 1048 (1462)
+ +++.++|. +..+++|+.++++.
T Consensus 439 s-N~l~~fPe--------~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 439 S-NQLLSFPE--------LAQLPQLKVLDLSC 461 (1081)
T ss_pred C-Cceeechh--------hhhcCcceEEeccc
Confidence 5 66777764 44577888887764
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=6.1e-17 Score=152.39 Aligned_cols=165 Identities=23% Similarity=0.348 Sum_probs=144.1
Q ss_pred ccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-cc
Q 046345 531 EVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IA 609 (1462)
Q Consensus 531 ~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~ 609 (1462)
.+++....++++..|.+++|. +..+|+. +..+++|++|++++|+|+++|.++++++.||.|++.-|.+.. |.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNK------l~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lpr 96 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNK------LTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPR 96 (264)
T ss_pred hhcccccchhhhhhhhcccCc------eeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcc
Confidence 456666777888888888877 6777877 488999999999999999999999999999999999999887 89
Q ss_pred ccccccCCcEEEecCCCCC--ccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccc
Q 046345 610 IVGQLKKLEILSFRDSDIK--ELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNAR 687 (1462)
Q Consensus 610 ~i~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 687 (1462)
.|+.++.|++||+.+|++. .+|..+..++.|+.|++++| .+..+|++ +++|++||.|.+..|... ..
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll---------~l 165 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL---------SL 165 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh---------hC
Confidence 9999999999999999877 78999999999999999997 78888888 899999999998877653 45
Q ss_pred hHhhhcCCCCcEEEEEeecccCCCcc
Q 046345 688 LDELKELSKLTTLEIHVRDAEILPQD 713 (1462)
Q Consensus 688 ~~~L~~l~~L~~L~l~~~~~~~~~~~ 713 (1462)
+.+++.++.|++|++.+|..+.+|+.
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChh
Confidence 68899999999999999988888765
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=9.2e-15 Score=137.89 Aligned_cols=150 Identities=24% Similarity=0.389 Sum_probs=138.1
Q ss_pred cCcEEEEccCCCCccCCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCc
Q 046345 518 EDPIAISLPHRDIEVLPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQ 596 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr 596 (1462)
..+.++.+++|++..+|+. ..+.+|.+|.+++|. +..+|.+ ++.+++||.|+++-|.+..+|..|+.++.|+
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq------ie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ------IEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccch------hhhcChh-hhhchhhhheecchhhhhcCccccCCCchhh
Confidence 3588899999999998876 579999999999987 6888887 5899999999999999999999999999999
Q ss_pred EEEecCcccCC---ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCc
Q 046345 597 TLCLHWCELED---IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGS 673 (1462)
Q Consensus 597 ~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 673 (1462)
+|||++|.+.+ |..|..+..|+.|.++.|.+.-+|+.+++|++||.|.++.| .+-.+|.. ++.|+.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccc
Confidence 99999999887 88899999999999999999999999999999999999998 68889988 899999999999998
Q ss_pred ccc
Q 046345 674 FSQ 676 (1462)
Q Consensus 674 ~~~ 676 (1462)
...
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 764
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.30 E-value=1.6e-11 Score=151.91 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=57.8
Q ss_pred cceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCccc
Q 046345 571 GLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWS 650 (1462)
Q Consensus 571 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 650 (1462)
.-.+|+++++.++.+|+.+. .+|+.|++.+|.++..+. .+++|++|++++|+++.+|.. .++|++|++++| .
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-P 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCC-c
Confidence 34567777777777776654 367777777777666222 246677777777777777642 356677777776 4
Q ss_pred ccccCccccccccccceeeccCccc
Q 046345 651 LEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 651 l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
+..+|.. ..+|+.|++++|.+
T Consensus 274 L~~Lp~l----p~~L~~L~Ls~N~L 294 (788)
T PRK15387 274 LTHLPAL----PSGLCKLWIFGNQL 294 (788)
T ss_pred hhhhhhc----hhhcCEEECcCCcc
Confidence 5555542 24566666666654
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=3e-11 Score=149.58 Aligned_cols=253 Identities=18% Similarity=0.152 Sum_probs=160.8
Q ss_pred cEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEE
Q 046345 520 PIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLC 599 (1462)
Q Consensus 520 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~ 599 (1462)
-..+.+..+.+..+|... .++|+.|.+.+|. +..+|. .+++|++|++++|.++.+|.. ..+|+.|+
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~------Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~ 268 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNN------LTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELS 268 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCc------CCCCCC----CCCCCcEEEecCCccCcccCc---ccccceee
Confidence 456777778888888744 3578889888876 456664 257899999999999888853 46788999
Q ss_pred ecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCccccccc
Q 046345 600 LHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDK 679 (1462)
Q Consensus 600 L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 679 (1462)
+++|.+..++. -..+|+.|++++|+++.+|. .+++|++|++++| .+..+|.. . .+|+.|++++|.+..
T Consensus 269 Ls~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~~-- 336 (788)
T PRK15387 269 IFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLTS-- 336 (788)
T ss_pred ccCCchhhhhh--chhhcCEEECcCCccccccc---cccccceeECCCC-ccccCCCC-c---ccccccccccCcccc--
Confidence 99998877322 23568889999999988886 3578999999987 67777652 2 456777777765521
Q ss_pred ccCCCccchHhhhcC-CCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHH
Q 046345 680 VEGGSNARLDELKEL-SKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMK 758 (1462)
Q Consensus 680 ~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 758 (1462)
+..+ .+|+.|+++.|.+..+|.. ..+
T Consensus 337 -----------LP~lp~~Lq~LdLS~N~Ls~LP~l--p~~---------------------------------------- 363 (788)
T PRK15387 337 -----------LPTLPSGLQELSVSDNQLASLPTL--PSE---------------------------------------- 363 (788)
T ss_pred -----------ccccccccceEecCCCccCCCCCC--Ccc----------------------------------------
Confidence 1112 3688888888877665531 111
Q ss_pred HHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceeccccccccccccc
Q 046345 759 LLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICD 838 (1462)
Q Consensus 759 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 838 (1462)
|+.|++.+. .+..+ +. ..++|+.|+++++. +..++ ...++|+.|++++ +.++.++.
T Consensus 364 -----L~~L~Ls~N-~L~~L----P~--l~~~L~~LdLs~N~-Lt~LP----------~l~s~L~~LdLS~-N~LssIP~ 419 (788)
T PRK15387 364 -----LYKLWAYNN-RLTSL----PA--LPSGLKELIVSGNR-LTSLP----------VLPSELKELMVSG-NRLTSLPM 419 (788)
T ss_pred -----cceehhhcc-ccccC----cc--cccccceEEecCCc-ccCCC----------CcccCCCEEEccC-CcCCCCCc
Confidence 222222211 11111 10 12356677776543 22221 1235677777777 34554431
Q ss_pred ccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEeccc
Q 046345 839 SPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCE 885 (1462)
Q Consensus 839 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~ 885 (1462)
.+.+|+.|+++++ +++.+|. .+..+++|+.|++++++
T Consensus 420 -------l~~~L~~L~Ls~N-qLt~LP~--sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 -------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 456 (788)
T ss_pred -------chhhhhhhhhccC-cccccCh--HHhhccCCCeEECCCCC
Confidence 2346777777774 5677764 46678888888888764
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.23 E-value=6.1e-10 Score=150.08 Aligned_cols=296 Identities=15% Similarity=0.176 Sum_probs=180.5
Q ss_pred cccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-CCHHHHHHHHHHHhCC
Q 046345 157 EAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-PDHQKIQDKLAFDLGM 235 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 235 (1462)
..++-|...++.+.. ....+++.|+|++|.||||++..+.... +.+.|+++... .+...+...++..++.
T Consensus 14 ~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 14 HNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred cccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 456778766666542 2456799999999999999999988532 25899999754 4666677777766642
Q ss_pred CCCCC-------------cChHHHHHHHHHHHHc-cCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEec
Q 046345 236 EFGLN-------------ENTFQKAYRLCERLKK-EKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSR 301 (1462)
Q Consensus 236 ~~~~~-------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr 301 (1462)
..... .........+...+.. +.+++||+||+....+.. +...+..+ +.....+.++|||||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~-~~~~l~~l---~~~~~~~~~lv~~sR 160 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPE-IHEAMRFF---LRHQPENLTLVVLSR 160 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChH-HHHHHHHH---HHhCCCCeEEEEEeC
Confidence 11100 1112233444455533 689999999996643211 00001111 111446778989999
Q ss_pred chhhhh--hccCCCceEEcc----CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHhcCCHHH
Q 046345 302 NRDLLE--KDMKSQKNFLIE----VLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALKSKSLDF 375 (1462)
Q Consensus 302 ~~~v~~--~~~~~~~~~~l~----~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~ 375 (1462)
...-.. .........+++ +|+.+|+.++|....+.. -..+.+.+|.+.++|.|+++..++..++.....
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~- 235 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP----IEAAESSRLCDDVEGWATALQLIALSARQNNSS- 235 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-
Confidence 743220 011112345555 999999999998877632 234567889999999999999998877644210
Q ss_pred HHHHHHHHhcCccccccchhhHHHHHHH-HhhhccChHHHHHHHHHhcccCCCcccChhHHHHHHhccccccccccHHHH
Q 046345 376 WKDALYRLRSSNAREIHGMRANVFTSIE-LSYNLLEIEEAKSLFLLCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLEEA 454 (1462)
Q Consensus 376 w~~~~~~l~~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~~k~cf~~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~ 454 (1462)
.......+... ....+...+. -.|+.||+ +.++.+...|+++ .++.+-+-.. . +. ++
T Consensus 236 ~~~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~l~~~l------~-~~---~~- 293 (903)
T PRK04841 236 LHDSARRLAGI-------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDALIVRV------T-GE---EN- 293 (903)
T ss_pred hhhhhHhhcCC-------CchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHHHHHHH------c-CC---Cc-
Confidence 01111111100 1123444433 34789996 7999999999987 3443322211 1 11 11
Q ss_pred HHHHHHHHHHHHHcccccc-C-CCCCcEEEcchHHHHHHHHhc
Q 046345 455 RSRVHTLIDILKASCLLSD-G-DAEDEVKMHDIIHVVAVSIAT 495 (1462)
Q Consensus 455 ~~~~~~~~~~L~~~~l~~~-~-~~~~~~~mH~lv~~~a~~~~~ 495 (1462)
..+.++.|.+.+++.. . +....|+.|+++++++.....
T Consensus 294 ---~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 294 ---GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ---HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 1346788888888643 2 334579999999999998763
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.20 E-value=6e-11 Score=148.22 Aligned_cols=175 Identities=18% Similarity=0.243 Sum_probs=117.3
Q ss_pred cCcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 518 EDPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
++...+.+.+.++..+|... .++++.|++.+|. +..+|..++ .+|++|++++|.++.+|..+. .+|+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~------LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNE------LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQE 245 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCC------CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccE
Confidence 34566777777777777643 3578888888776 566776654 478888888888888887654 37888
Q ss_pred EEecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccc
Q 046345 598 LCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQ 676 (1462)
Q Consensus 598 L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 676 (1462)
|+|++|.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++| ++..+|.. +. .+|++|++++|.+.
T Consensus 246 L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 246 MELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred EECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccc
Confidence 8888888777 55543 478888888888888887654 47888888887 67777654 32 46777888777553
Q ss_pred cccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEE
Q 046345 677 WDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRI 724 (1462)
Q Consensus 677 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i 724 (1462)
... ..+ .++|+.|+++.|.+..+|.... .+|+.|.+
T Consensus 318 ~LP---------~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~L 353 (754)
T PRK15370 318 ALP---------ETL--PPGLKTLEAGENALTSLPASLP-PELQVLDV 353 (754)
T ss_pred cCC---------ccc--cccceeccccCCccccCChhhc-CcccEEEC
Confidence 211 111 2467777777777666554321 34444444
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.17 E-value=4.6e-13 Score=145.24 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=44.8
Q ss_pred ccccccceeecCcccchhhhccccccccccccccCCccccccCCcceEeeccccccccccchhhhhhcccccEEEE
Q 046345 1360 VAFPRLNALKLSRLPKVLHLWSENLESNKVFTKLQTPEISECKNLWDLEVSSCHELINLLTLSTSESLVNLRRMKI 1435 (1462)
Q Consensus 1360 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~~~L~~l~i~~c~~l~~l~~~~~~~~l~~L~~L~i 1435 (1462)
.....|..+.|++||.+++-. |+ ++..|++|+.+++.+|.+++.=+...+...+++++....
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~------------Le--~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDAT------------LE--HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccccccceeeecCCCCchHHH------------HH--HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 455678888888888776641 12 134788999999999988888777777777777766543
No 22
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.12 E-value=3.6e-09 Score=126.46 Aligned_cols=298 Identities=17% Similarity=0.143 Sum_probs=189.5
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-CCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-PDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~ 234 (1462)
....+-|....+.+.. ..+.+.+.|..|+|.||||++...+.... .-..+.|.++++. .++.++...++..++
T Consensus 18 ~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 18 PDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 3445667655555442 34778999999999999999999998442 3346999999865 568889999988887
Q ss_pred CCCCCCcC-------------hHHHHHHHHHHHHc-cCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEe
Q 046345 235 MEFGLNEN-------------TFQKAYRLCERLKK-EKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTS 300 (1462)
Q Consensus 235 ~~~~~~~~-------------~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTt 300 (1462)
...+...+ .....+.++..+.. .++..+||||-.-..+..- -..+..+++ ...++-..+|||
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l-~~~l~fLl~---~~P~~l~lvv~S 167 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPAL-HEALRFLLK---HAPENLTLVVTS 167 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccH-HHHHHHHHH---hCCCCeEEEEEe
Confidence 54442111 12244455555532 6788999999654322110 001111222 266789999999
Q ss_pred cchhhhhh--ccCCCceEEcc----CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHhcC-CH
Q 046345 301 RNRDLLEK--DMKSQKNFLIE----VLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALKSK-SL 373 (1462)
Q Consensus 301 r~~~v~~~--~~~~~~~~~l~----~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-~~ 373 (1462)
|+..-..- ..-....++++ .++.+|+-++|....+. +-.+.-++.+.+..+|-+-|+..++=.+++. +.
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL----PLDAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 98755410 11112233333 48999999999987652 2234567889999999999999999888844 43
Q ss_pred HHHHHHHHHHhcCccccccchhhHHH-HHHHHhhhccChHHHHHHHHHhcccCCCcccChhHHHHHHhccccccccccHH
Q 046345 374 DFWKDALYRLRSSNAREIHGMRANVF-TSIELSYNLLEIEEAKSLFLLCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLE 452 (1462)
Q Consensus 374 ~~w~~~~~~l~~~~~~~~~~~~~~~~-~~l~~sy~~L~~~~~k~cf~~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~ 452 (1462)
+.-...+. +....+. --..=-++.||+ ++|..++.+|+++. +. +.|+..-.
T Consensus 244 ~q~~~~Ls-----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~---f~-~eL~~~Lt------------ 295 (894)
T COG2909 244 EQSLRGLS-----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSR---FN-DELCNALT------------ 295 (894)
T ss_pred HHHhhhcc-----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHH---hh-HHHHHHHh------------
Confidence 32222111 1111111 112334678997 79999999999975 21 22332111
Q ss_pred HHHHHHHHHHHHHHHcccccc--CCCCCcEEEcchHHHHHHHHhcc
Q 046345 453 EARSRVHTLIDILKASCLLSD--GDAEDEVKMHDIIHVVAVSIATE 496 (1462)
Q Consensus 453 ~~~~~~~~~~~~L~~~~l~~~--~~~~~~~~mH~lv~~~a~~~~~~ 496 (1462)
.++.+.+++++|.+++++.. ++....|+.|.++.+|.+..-..
T Consensus 296 -g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 -GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 11234457899999998753 35678899999999999876554
No 23
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=2.4e-10 Score=127.01 Aligned_cols=201 Identities=24% Similarity=0.305 Sum_probs=107.5
Q ss_pred cchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHH---------
Q 046345 159 FDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKL--------- 229 (1462)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--------- 229 (1462)
|+||++++++|.+++.++..+.+.|+|+.|+|||+|++.+.+..... .+ .++|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 78999999999999988767799999999999999999999988422 22 34444443333221 11111
Q ss_pred -HHHhC----CCC------CCCcChHHHHHHHHHHHHc-cCcEEEEEcCCcccc-ccc---ccCCCCccccccccCCCCC
Q 046345 230 -AFDLG----MEF------GLNENTFQKAYRLCERLKK-EKKVLIILDNIWTKL-ELD---VVGIPYGDVEKERKDDESG 293 (1462)
Q Consensus 230 -~~~l~----~~~------~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~~~---~~~~~~~~l~~~~~~~~~g 293 (1462)
...++ ... ............+.+.+.+ +++.+||+||+.... ... .+...+..+.+... ....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCC
Confidence 11121 110 0011223444555555543 456999999998766 222 11111111111111 2334
Q ss_pred cEEEEEecchhhhhh-------ccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 294 CTIILTSRNRDLLEK-------DMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 294 s~IlvTtr~~~v~~~-------~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
..++++......... ..+....+.+++++.+++++++...+.+...-+..++..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 445555444433311 2234446999999999999999998743311123466779999999999998764
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.08 E-value=4.2e-12 Score=137.89 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=55.5
Q ss_pred ccCCcEEEEecCCCcccccCcC-cCCCCCccEEEEcccccceeeeccccccccCceeeeccccccccCcCccccccccCC
Q 046345 1100 FSKLKNLVIFRCNNLMNIFPPL-VGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIAFNELKFLELDKLPRLRSFCLEN 1178 (1462)
Q Consensus 1100 l~~L~~L~l~~c~~l~~~~~~~-l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 1178 (1462)
...|+.|..++|.++++..... .++.++|+.|.+++|..+...--..-. -.++.|+.+++.+|....+-.+..
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~------rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG------RNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh------cCChhhhhhcccccceehhhhHhh
Confidence 3456666666666655532222 455666666666666654332111000 124555555555555444433323
Q ss_pred ccccCCCcceEeeecccCcccc-----cCCccccccceeEEeeecc
Q 046345 1179 YTLEFPSLERFSMKECRNMKTF-----SQGALFTPKLCKVQMIENE 1219 (1462)
Q Consensus 1179 ~~~~~~~L~~L~l~~c~~l~~~-----~~~~~~~~~L~~L~l~~c~ 1219 (1462)
...++|.|+.|.+++|..++.. .........|..|++++|+
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 3345666666666666555432 2222333445555555555
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=1.1e-10 Score=148.35 Aligned_cols=298 Identities=21% Similarity=0.227 Sum_probs=176.7
Q ss_pred CcEEEEccCCC--CccCCc--cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCc
Q 046345 519 DPIAISLPHRD--IEVLPE--RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTS 594 (1462)
Q Consensus 519 ~~r~lsl~~~~--~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~ 594 (1462)
+.+.+-+..+. +..++. ...++.||+|++++|.. ..++|.. ++.+-+||||+++++.|..+|.++++|+.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-----l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-----LSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKK 619 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-----cCcCChH-HhhhhhhhcccccCCCccccchHHHHHHh
Confidence 47777777775 555555 46799999999999876 7889987 59999999999999999999999999999
Q ss_pred CcEEEecCcccC-C-ccccccccCCcEEEecCCCCCccchhh---ccccccCEEccCCcccccccCccccccccccceee
Q 046345 595 LQTLCLHWCELE-D-IAIVGQLKKLEILSFRDSDIKELPLEI---GLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELY 669 (1462)
Q Consensus 595 Lr~L~L~~~~l~-~-~~~i~~L~~L~~L~L~~~~i~~lp~~i---~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~ 669 (1462)
|.||++..+.-. . +..+..|.+||+|.+.......-...+ .+|.+|+.|..... .. .+-.. +..++.|..+.
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~-s~-~~~e~-l~~~~~L~~~~ 696 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS-SV-LLLED-LLGMTRLRSLL 696 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc-hh-HhHhh-hhhhHHHHHHh
Confidence 999999988743 3 455666999999999876533222233 34444444444332 11 11111 33334443322
Q ss_pred ccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCc
Q 046345 670 MGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLE 749 (1462)
Q Consensus 670 l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~ 749 (1462)
..-.. .+......+..+..+.+|+.|.+........... |.......
T Consensus 697 ~~l~~-----~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~-------------------~~~~~~~~--------- 743 (889)
T KOG4658|consen 697 QSLSI-----EGCSKRTLISSLGSLGNLEELSILDCGISEIVIE-------------------WEESLIVL--------- 743 (889)
T ss_pred Hhhhh-----cccccceeecccccccCcceEEEEcCCCchhhcc-------------------cccccchh---------
Confidence 11110 0011223445556666666666664443221110 10000000
Q ss_pred chhHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCcc---cccccccccee-
Q 046345 750 KVSILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNI---RCKVFPLLESL- 825 (1462)
Q Consensus 750 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~---~~~~~~~L~~L- 825 (1462)
. .++++..+.+.+|...+...+. .-.|+|+.|.+..|..++.+.+....... ....|++++.+
T Consensus 744 -----~----~f~~l~~~~~~~~~~~r~l~~~----~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~ 810 (889)
T KOG4658|consen 744 -----L----CFPNLSKVSILNCHMLRDLTWL----LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLR 810 (889)
T ss_pred -----h----hHHHHHHHHhhccccccccchh----hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccce
Confidence 0 1233444444555555544332 23578888888887776655432221110 12346666666
Q ss_pred cccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecc
Q 046345 826 SLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYC 884 (1462)
Q Consensus 826 ~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c 884 (1462)
.+.+.+.+..+.+..+ .+++|..+.+..||++..+| .+.++.+.+|
T Consensus 811 ~~~~l~~l~~i~~~~l----~~~~l~~~~ve~~p~l~~~P---------~~~~~~i~~~ 856 (889)
T KOG4658|consen 811 MLCSLGGLPQLYWLPL----SFLKLEELIVEECPKLGKLP---------LLSTLTIVGC 856 (889)
T ss_pred eeecCCCCceeEeccc----CccchhheehhcCcccccCc---------cccccceecc
Confidence 4666666666655543 46668888888888877654 5566666665
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.06 E-value=2.8e-10 Score=142.37 Aligned_cols=226 Identities=16% Similarity=0.209 Sum_probs=160.9
Q ss_pred cCcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 518 EDPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
..++.+.+.+|.+..+|... .++|++|++.+|. +..+|..++ ..|+.|+|++|.+..+|..+. .+|++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~------LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-QGNIKTLYANSNQ------LTSIPATLP---DTIQEMELSINRITELPERLP--SALQS 266 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCc------cccCChhhh---ccccEEECcCCccCcCChhHh--CCCCE
Confidence 46889999999999998754 4799999999887 567777643 479999999999999998775 48999
Q ss_pred EEecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccc
Q 046345 598 LCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQ 676 (1462)
Q Consensus 598 L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 676 (1462)
|++++|.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.. + .++|+.|++++|.+.
T Consensus 267 L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 267 LDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPGLKTLEAGENALT 338 (754)
T ss_pred EECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--cccceeccccCCccc
Confidence 9999999988 65554 589999999999999987654 57999999998 67777765 2 368999999888653
Q ss_pred cccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHH
Q 046345 677 WDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLW 756 (1462)
Q Consensus 677 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 756 (1462)
. .+..+ .++|+.|+++.|.+..+|... ..+ ++.|++.++....+|..
T Consensus 339 ~---------LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~---------------------L~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 339 S---------LPASL--PPELQVLDVSKNQITVLPETL-PPT---------------------ITTLDVSRNALTNLPEN 385 (754)
T ss_pred c---------CChhh--cCcccEEECCCCCCCcCChhh-cCC---------------------cCEEECCCCcCCCCCHh
Confidence 2 11222 268999999998877665422 123 44444444443444444
Q ss_pred HHHHhccccceEeccccCcccccccccC-CCCCCCCcEEEEeecc
Q 046345 757 MKLLLKRTEDLYLSKLKGVQNVVHELDD-GEGFPRLNRLQVKDCY 800 (1462)
Q Consensus 757 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 800 (1462)
+. ..|+.|++.++. +..++..++. ...++++..|.+.+++
T Consensus 386 l~---~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 386 LP---AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HH---HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 33 346667776643 3333322221 2345788899888755
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.05 E-value=3.9e-08 Score=111.42 Aligned_cols=195 Identities=16% Similarity=0.202 Sum_probs=118.6
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTF 244 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 244 (1462)
.+..+...+. ...+.++|+|++|+||||+++.+++..... .. .+.|+ +....+..+++..|+..++.... .....
T Consensus 31 ~~~~l~~~~~-~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~ 105 (269)
T TIGR03015 31 AMAYLEYGLS-QREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKA 105 (269)
T ss_pred HHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHH
Confidence 3444443333 334589999999999999999999887522 11 12333 23345777889999998887654 23223
Q ss_pred HHHHHHH----HHHHccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecchhhh--h------hcc
Q 046345 245 QKAYRLC----ERLKKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL--E------KDM 310 (1462)
Q Consensus 245 ~~~~~l~----~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~--~------~~~ 310 (1462)
.....+. .....+++.++|+||++... .++.+... .+..........|++|....... . ...
T Consensus 106 ~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l----~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~ 181 (269)
T TIGR03015 106 ALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRML----SNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ 181 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHH----hCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh
Confidence 3333332 22335788999999998753 23322111 11100122233455555432110 0 001
Q ss_pred CCCceEEccCCCHHHHHHHHHHHhCC---CCCCCCchHHHHHHHHHccCCchHHHHHHHHH
Q 046345 311 KSQKNFLIEVLSKDEALQLFECIVGD---SAKTSAIQPIADEIVERCEGLPVALSTIANAL 368 (1462)
Q Consensus 311 ~~~~~~~l~~L~~~ea~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 368 (1462)
.....+++.+++.+|..+++...+.. .....-..+..+.|++.++|.|..|..++..+
T Consensus 182 r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 182 RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 11346889999999999999877632 11222346889999999999999999988775
No 28
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.04 E-value=5.3e-08 Score=117.04 Aligned_cols=294 Identities=16% Similarity=0.099 Sum_probs=168.4
Q ss_pred cccchhHHHHHHHHHHhc----cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFD 232 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 232 (1462)
..++||+++++++...+. .+..+.+.|+|++|+|||++++.+++........-.++++++....+...++..++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 568899999999998874 2344578899999999999999999988544323456777777777888999999998
Q ss_pred hCCC-CC-CCcChHHHHHHHHHHHHc-cCcEEEEEcCCcccc---cccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 233 LGME-FG-LNENTFQKAYRLCERLKK-EKKVLIILDNIWTKL---ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 233 l~~~-~~-~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
+... .+ ...+..+....+.+.+.. +++.+||+|+++... ..+.+...+..+.+. ...+..+|.++....+.
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~---~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY---PGARIGVIGISSDLTFL 186 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc---CCCeEEEEEEECCcchh
Confidence 8652 21 122344555666666643 456899999998753 111111100000000 11133366666655433
Q ss_pred hh------ccCCCceEEccCCCHHHHHHHHHHHhCCCC-CCCCchHHHHHHHHHc----cCCchHHHHHHHHH--h---c
Q 046345 307 EK------DMKSQKNFLIEVLSKDEALQLFECIVGDSA-KTSAIQPIADEIVERC----EGLPVALSTIANAL--K---S 370 (1462)
Q Consensus 307 ~~------~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~-~~~~~~~~~~~i~~~~----~glPlai~~~~~~l--~---~ 370 (1462)
.. ..-....+.+.+++.++..+++..++.... ...-..+.++.|++.+ |..+.|+.++-... . +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 11 011134689999999999999998773211 1111234444454444 55777776654322 1 1
Q ss_pred C---CHHHHHHHHHHHhcCccccccchhhHHHHHHHHhhhccChHHHHHHHHHhcc-cC-CCcccChhHHHHHH--hccc
Q 046345 371 K---SLDFWKDALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFLLCGL-YS-EGHAIQVPSLLRYG--MGLC 443 (1462)
Q Consensus 371 ~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~-fp-~~~~i~~~~Li~~W--~a~g 443 (1462)
. +.+++.++.+.+. .....-.+..||. +.|..+..++. .. ....+...++.... +++.
T Consensus 267 ~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 4555555555431 1233456788996 33433333332 22 11345555555321 2211
Q ss_pred cccccccHHHHHHHHHHHHHHHHHccccc
Q 046345 444 LFENVYKLEEARSRVHTLIDILKASCLLS 472 (1462)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~ 472 (1462)
+-.... ....+.++++.|...+++.
T Consensus 332 ~~~~~~----~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 332 LGYEPR----THTRFYEYINKLDMLGIIN 356 (394)
T ss_pred cCCCcC----cHHHHHHHHHHHHhcCCeE
Confidence 100000 2245667888899999886
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.02 E-value=8.8e-11 Score=126.55 Aligned_cols=138 Identities=22% Similarity=0.269 Sum_probs=107.3
Q ss_pred CCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEecC-cccC
Q 046345 529 DIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHW-CELE 606 (1462)
Q Consensus 529 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~-~~l~ 606 (1462)
...++|... -+....+++..|. +..||+..|+.+++||.||||+|.|+.| |+.|..|..|-.|.+-+ |+|+
T Consensus 57 GL~eVP~~L-P~~tveirLdqN~------I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 57 GLTEVPANL-PPETVEIRLDQNQ------ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred CcccCcccC-CCcceEEEeccCC------cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344455422 2345667777776 7888999999999999999999999988 78899999877776655 8888
Q ss_pred C-c-cccccccCCcEEEecCCCCCccch-hhccccccCEEccCCcccccccCccccccccccceeeccCcc
Q 046345 607 D-I-AIVGQLKKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 607 ~-~-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
+ | ..|++|..|+.|.+.-|++.-++. .+..|++|..|.+.+| .+..++...+..+.+++++.+..|.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 8 4 678899999999998888886654 5778899999998886 6778887778888888888766543
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.01 E-value=2.7e-11 Score=130.49 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=85.8
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecC-CCCCccchh
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRD-SDIKELPLE 633 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~-~~i~~lp~~ 633 (1462)
+..+|.+.- ..-..++|..|.|+.||+ +|+.+++||.|||++|.|+. |..|.+|..|-.|-+-+ |+|+.+|.+
T Consensus 58 L~eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 58 LTEVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cccCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 566665532 345678899999999986 78999999999999998887 78888888876666655 788888864
Q ss_pred -hccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 634 -IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 634 -i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
+++|..||.|.+.-| .+.-++.+.+..|.+|..|.+..|.+
T Consensus 135 ~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred HhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhh
Confidence 567888888877766 55666666677777777777766654
No 31
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.94 E-value=1.9e-07 Score=111.02 Aligned_cols=298 Identities=15% Similarity=0.150 Sum_probs=167.0
Q ss_pred cccchhHHHHHHHHHHhcc----CCceEEEEEecCCCcHHHHHHHHHHHHhhcc-CC---CeEEEEEecCCCCHHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAKD----DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK-SF---DKVVMAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~ 228 (1462)
..++||+++++.|..++.+ +..+.+.|+|++|+|||++++.+++...... .. -.++|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 3688999999999998863 3456889999999999999999999864211 11 24678888777778889999
Q ss_pred HHHHh---CCCCCC-CcChHHHHHHHHHHHH-ccCcEEEEEcCCcccc-cccccCCCCccccccccCCCCCcEEEEEecc
Q 046345 229 LAFDL---GMEFGL-NENTFQKAYRLCERLK-KEKKVLIILDNIWTKL-ELDVVGIPYGDVEKERKDDESGCTIILTSRN 302 (1462)
Q Consensus 229 i~~~l---~~~~~~-~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~ 302 (1462)
|+.++ +...+. ..+..+....+.+.+. .+++++||+|+++... ..+.+...+..+............+|++|+.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 99988 333221 1233444555555553 3567899999998762 1111100000100000001133455666654
Q ss_pred hhhhh---hc-cC--CCceEEccCCCHHHHHHHHHHHhCC--C--CCCCCchHHHHHHHHHccCCchHH-HHHHHHH---
Q 046345 303 RDLLE---KD-MK--SQKNFLIEVLSKDEALQLFECIVGD--S--AKTSAIQPIADEIVERCEGLPVAL-STIANAL--- 368 (1462)
Q Consensus 303 ~~v~~---~~-~~--~~~~~~l~~L~~~ea~~lf~~~~~~--~--~~~~~~~~~~~~i~~~~~glPlai-~~~~~~l--- 368 (1462)
..... .. .. ....+.+.+++.++..+++..++.. . .-.++..+.+..++....|-|..+ .++-...
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 43321 01 11 1246899999999999999988731 1 112222234455666667877543 3222111
Q ss_pred -h-c--C-CHHHHHHHHHHHhcCccccccchhhHHHHHHHHhhhccChHHHHHHHHHhccc--CCCcccChhHHHHHHh-
Q 046345 369 -K-S--K-SLDFWKDALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFLLCGLY--SEGHAIQVPSLLRYGM- 440 (1462)
Q Consensus 369 -~-~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~f--p~~~~i~~~~Li~~W~- 440 (1462)
. + . +.+..+.+.+.+. .....-++..||. +.+..+..++.. .++..+...++...+-
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 1 4445554444331 1223446678885 444444443321 1334566666666331
Q ss_pred -ccccccccccHHHHHHHHHHHHHHHHHcccccc
Q 046345 441 -GLCLFENVYKLEEARSRVHTLIDILKASCLLSD 473 (1462)
Q Consensus 441 -a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 473 (1462)
++.+-... -....+.++++.|...+++..
T Consensus 320 ~~~~~~~~~----~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 320 VCEDIGVDP----LTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHhcCCCC----CcHHHHHHHHHHHHhcCCeEE
Confidence 12110011 123557778888999999863
No 32
>PF05729 NACHT: NACHT domain
Probab=98.88 E-value=1.1e-08 Score=106.57 Aligned_cols=151 Identities=25% Similarity=0.329 Sum_probs=94.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccC----CCeEEEEEecCCCCHH---HHHHHHHHHhCCCCCCCcChHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKS----FDKVVMAEVTQTPDHQ---KIQDKLAFDLGMEFGLNENTFQKAYRLC 251 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 251 (1462)
+++.|+|.+|+||||+++.++........ +...+|+..+...... .+...|..+...... ...+ ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 58999999999999999999999875543 3457777776554332 344444444332211 1111 222
Q ss_pred HHHHccCcEEEEEcCCccccccccc--CCCCcc-ccccccC-CCCCcEEEEEecchhh--hhhccCCCceEEccCCCHHH
Q 046345 252 ERLKKEKKVLIILDNIWTKLELDVV--GIPYGD-VEKERKD-DESGCTIILTSRNRDL--LEKDMKSQKNFLIEVLSKDE 325 (1462)
Q Consensus 252 ~~l~~~k~~LlVlDdv~~~~~~~~~--~~~~~~-l~~~~~~-~~~gs~IlvTtr~~~v--~~~~~~~~~~~~l~~L~~~e 325 (1462)
..+...+++++|+|++++...-... ...+.. +.+.+.. ..++.+|+||+|.... ..........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 3334589999999999876432111 001111 1111111 3568999999998877 32233444689999999999
Q ss_pred HHHHHHHHhC
Q 046345 326 ALQLFECIVG 335 (1462)
Q Consensus 326 a~~lf~~~~~ 335 (1462)
..+++.++..
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988763
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=3.6e-09 Score=107.22 Aligned_cols=128 Identities=23% Similarity=0.302 Sum_probs=42.2
Q ss_pred cCCcceEEEecCCCCCCCCcccC-CCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccchhhc-cccccCEEcc
Q 046345 568 GTEGLKVLDFTGIHFSSLPSSLG-RLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIG-LLTRLSLLDL 645 (1462)
Q Consensus 568 ~l~~Lr~L~Ls~~~i~~lp~~i~-~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L 645 (1462)
+..++|.|+|.+|.|+.+. .++ .+.+|+.|+|++|.|+..+.+..+++|++|++++|.|+.++..+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445677777777776653 344 466777777777777776667777777777777777777765553 5677777777
Q ss_pred CCcccccccCc-cccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEE
Q 046345 646 SDCWSLEVIAP-NVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEI 702 (1462)
Q Consensus 646 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l 702 (1462)
++| ++..+.. ..++.+++|++|++.+|.+... ......-+..+++|+.|+-
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-----~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK-----KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-----TTHHHHHHHH-TT-SEETT
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCcccch-----hhHHHHHHHHcChhheeCC
Confidence 776 4444321 2255667777777776654211 2223445556677776653
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.79 E-value=7.9e-08 Score=111.34 Aligned_cols=276 Identities=13% Similarity=0.066 Sum_probs=144.0
Q ss_pred CCccccchhHHHHHHHHHHhc-----cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHH
Q 046345 154 KDYEAFDSRMKVFQDVVEAAK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 228 (1462)
.....|+||++.++.+...+. ....+.+.++|++|+|||++|+.+++.... .+ .++.... ......+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEeccc-ccChHHHHH
Confidence 345779999999998877765 233567889999999999999999998842 11 1222211 111112222
Q ss_pred HHHHhCCCCCCCcCh-----HHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 229 LAFDLGMEFGLNENT-----FQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 229 i~~~l~~~~~~~~~~-----~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
++..++...-.--++ ......+...+ .+.+..+|+|+..+...+... -.+.+-|..|++..
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~-e~~~~~~~l~~~~~~~~~~~~-------------l~~~~li~at~~~~ 161 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAM-EDFRLDIMIGKGPAARSIRLD-------------LPPFTLIGATTRAG 161 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHH-HhcceeeeeccCccccceeec-------------CCCceEEeecCCcc
Confidence 232222111000000 01111122222 234444555554332221110 11234455666654
Q ss_pred hhhhhccC-CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046345 304 DLLEKDMK-SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALKSKSLDFWKDALYR 382 (1462)
Q Consensus 304 ~v~~~~~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~ 382 (1462)
.+...... ....+++++++.++..+++.+.++.. ...-..+.+..|++.|+|.|..+..+...+. .|....
T Consensus 162 ~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~-~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~-- 233 (328)
T PRK00080 162 LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL-GVEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK-- 233 (328)
T ss_pred cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc--
Confidence 33321111 23578999999999999999888642 2233457789999999999976555544322 111110
Q ss_pred HhcCccccccchhhHHHHHHHHhhhccChHHHHHHHH-HhcccCCCcccChhHHHHHHhccccccccccHHHHHHHHHHH
Q 046345 383 LRSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFL-LCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLEEARSRVHTL 461 (1462)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~-~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~~~~~~~~ 461 (1462)
..... . ...-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... -.+..+.+ +.
T Consensus 234 -~~~~I-~-~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----g~~~~~~~-------~~ 296 (328)
T PRK00080 234 -GDGVI-T-KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL-----GEERDTIE-------DV 296 (328)
T ss_pred -CCCCC-C-HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH-----CCCcchHH-------HH
Confidence 00000 0 01112334455666778885 4455554 56667655 56555554321 11222222 23
Q ss_pred HH-HHHHccccccC
Q 046345 462 ID-ILKASCLLSDG 474 (1462)
Q Consensus 462 ~~-~L~~~~l~~~~ 474 (1462)
++ .|++.+|++..
T Consensus 297 ~e~~Li~~~li~~~ 310 (328)
T PRK00080 297 YEPYLIQQGFIQRT 310 (328)
T ss_pred hhHHHHHcCCcccC
Confidence 44 67888888654
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.78 E-value=4.3e-07 Score=104.82 Aligned_cols=274 Identities=14% Similarity=0.089 Sum_probs=145.0
Q ss_pred ccccchhHHHHHHHHHHhc-----cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHH
Q 046345 156 YEAFDSRMKVFQDVVEAAK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~-----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
...|+|+++.++.+..++. .+..+.+.++|++|+|||+||+.+++.... .+ ..+.......... +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchhcCchh-HHHHH
Confidence 4578999999999988876 244557889999999999999999998742 21 1222211111112 22222
Q ss_pred HHhCCCCCC-----CcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhh
Q 046345 231 FDLGMEFGL-----NENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDL 305 (1462)
Q Consensus 231 ~~l~~~~~~-----~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v 305 (1462)
..++...-. +.-..+....+...+ .+.+..+|+|+..+...+... ..+.+-|..||+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~~-------------~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRLD-------------LPPFTLVGATTRAGML 142 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceeec-------------CCCeEEEEecCCcccc
Confidence 222211100 000011122222333 344455666665444333221 1224445567776444
Q ss_pred hhhccC-CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 046345 306 LEKDMK-SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALKSKSLDFWKDALYRLR 384 (1462)
Q Consensus 306 ~~~~~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~ 384 (1462)
...... ....+++++++.++..+++.+.++.. ...-..+.+..|++.|+|.|..+..++..+ |... ....
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~-~~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a-~~~~ 213 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL-NVEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA-QVRG 213 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH-HHcC
Confidence 321111 23468999999999999999888532 223345778899999999998766555432 1110 0000
Q ss_pred cCccccccchhhHHHHHHHHhhhccChHHHHHHHH-HhcccCCCcccChhHHHHHHhccccccccccHHHHHHHHHHHHH
Q 046345 385 SSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFL-LCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLEEARSRVHTLID 463 (1462)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~-~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~~~~~~~~~~ 463 (1462)
.... . ...-......+...|..++. +.+..+. ..+.++.+ .+..+.+.... | . +.. .....++
T Consensus 214 ~~~i-t-~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--~---~~~----~~~~~~e 277 (305)
T TIGR00635 214 QKII-N-RDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--E---DAD----TIEDVYE 277 (305)
T ss_pred CCCc-C-HHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--C---Ccc----hHHHhhh
Confidence 0000 0 00112222335667788885 4455555 55666543 45544443321 1 1 111 2233456
Q ss_pred -HHHHccccccC
Q 046345 464 -ILKASCLLSDG 474 (1462)
Q Consensus 464 -~L~~~~l~~~~ 474 (1462)
.|++.+|++..
T Consensus 278 ~~Li~~~li~~~ 289 (305)
T TIGR00635 278 PYLLQIGFLQRT 289 (305)
T ss_pred HHHHHcCCcccC
Confidence 58889999744
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=4.2e-09 Score=106.70 Aligned_cols=137 Identities=24% Similarity=0.318 Sum_probs=52.7
Q ss_pred ecCCCCCCCCcccCCCCcCcEEEecCcccCCccccc-cccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccC
Q 046345 577 FTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVG-QLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIA 655 (1462)
Q Consensus 577 Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~-~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p 655 (1462)
|+.+-|...|. +.+..++|.|+|++|.|+.++.++ .+.+|+.|++++|.|+.++ ++..+++|++|++++| .++.++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred ccccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccc
Confidence 44455555554 455668999999999999988888 6899999999999999985 6889999999999998 788886
Q ss_pred ccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCcc-----ccccccceeE
Q 046345 656 PNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD-----LVFMELERYR 723 (1462)
Q Consensus 656 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~~L~ 723 (1462)
......+++|++|++++|.+. +-..+..|+.+++|+.|++.+|.+...+.. ..+++|+.|+
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~-------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKIS-------DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHHHH-TT--EEE-TTS----------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cchHHhCCcCCEEECcCCcCC-------ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 552246999999999998773 234467888999999999999988765443 3456666554
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.74 E-value=3.9e-07 Score=100.28 Aligned_cols=224 Identities=17% Similarity=0.217 Sum_probs=131.9
Q ss_pred cCCccccchhHHHH---HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHH
Q 046345 153 VKDYEAFDSRMKVF---QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKL 229 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 229 (1462)
+.....++|.+..+ .-|-.++..+.+....+||++|+||||||+.+++.. +..| ..++...+...-++++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~--~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT--NAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh--CCce-----EEeccccccHHHHHHH
Confidence 34456667776654 335556668888899999999999999999999977 3443 3333332222212222
Q ss_pred HHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEE--Eecchhh
Q 046345 230 AFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIIL--TSRNRDL 305 (1462)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~Ilv--Ttr~~~v 305 (1462)
+ +...+....+++.+|.+|+|..- .+-+.+. |. -.+|.-|+| ||-++..
T Consensus 93 ~-----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL-p~---------vE~G~iilIGATTENPsF 145 (436)
T COG2256 93 I-----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALL-PH---------VENGTIILIGATTENPSF 145 (436)
T ss_pred H-----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhh-hh---------hcCCeEEEEeccCCCCCe
Confidence 2 22223333489999999999654 3444442 22 345776776 6777654
Q ss_pred h--hhccCCCceEEccCCCHHHHHHHHHHHhCCCCC-----CC-CchHHHHHHHHHccCCch-HHHH---HHHHHhcC--
Q 046345 306 L--EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAK-----TS-AIQPIADEIVERCEGLPV-ALST---IANALKSK-- 371 (1462)
Q Consensus 306 ~--~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~-----~~-~~~~~~~~i~~~~~glPl-ai~~---~~~~l~~~-- 371 (1462)
. .....+..++.+++|+.+|-.+++.+.+.+... .. -.+++...+++.++|=-. |+.. ++..-+..
T Consensus 146 ~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~ 225 (436)
T COG2256 146 ELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEV 225 (436)
T ss_pred eecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcc
Confidence 3 223455679999999999999999985532111 11 234577788888887433 3322 22222222
Q ss_pred -CHHHHHHHHHHHhcCccccccchhhHHHHHHHHhhhccCh
Q 046345 372 -SLDFWKDALYRLRSSNAREIHGMRANVFTSIELSYNLLEI 411 (1462)
Q Consensus 372 -~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 411 (1462)
..+..++++.+-.. ....-.+...++..+|.-|...-++
T Consensus 226 ~~~~~l~~~l~~~~~-~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 226 LILELLEEILQRRSA-RFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred cCHHHHHHHHhhhhh-ccCCCcchHHHHHHHHHHhhccCCc
Confidence 23333444333111 1111112346788888888888775
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=3.2e-09 Score=109.99 Aligned_cols=133 Identities=18% Similarity=0.207 Sum_probs=102.9
Q ss_pred CcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcc
Q 046345 570 EGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCW 649 (1462)
Q Consensus 570 ~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 649 (1462)
+.|..||||+|.|+.+-.++.-++.+|.|++++|.+.....+..|++|+.||||+|.++++-..-.+|-|.++|.|.+|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N- 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN- 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-
Confidence 5678888888888888888888888888888888888877788888888888888888777655567888888888887
Q ss_pred cccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCc
Q 046345 650 SLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQ 712 (1462)
Q Consensus 650 ~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 712 (1462)
.+..+.. +++|-+|..|++.+|.+. .-.....+++++.|+.|.+..|.+..++.
T Consensus 363 ~iE~LSG--L~KLYSLvnLDl~~N~Ie-------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 363 KIETLSG--LRKLYSLVNLDLSSNQIE-------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hHhhhhh--hHhhhhheeccccccchh-------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 5665533 788888888888888763 22344667788888888888777655443
No 39
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.63 E-value=3.4e-08 Score=118.30 Aligned_cols=260 Identities=15% Similarity=0.121 Sum_probs=137.0
Q ss_pred HHHHHHHhHhHHHHHhhccchhchhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 046345 11 SIVSEGSKTLFKPIIRQVSYLFKYQSYIDELKNQVRQLGYKREMVQQPVNQASLQRDEIYEGVTNWLNSVDEFSEGVAKS 90 (1462)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~~~~~~~~~~ed 90 (1462)
.|+..++.++++.-.+++..+.++|..+...+++....+. .+.++++........|+++.+..+.. +
T Consensus 211 ~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~----------~~~~~~~~~~~~~~~~i~r~~~~~~~-~-- 277 (530)
T COG0488 211 YFLDNVATHILELDRGKLTPYKGNYSSYLEQKAERLRQEA----------AAYEKQQKELAKEQEWIRRGKAAASK-A-- 277 (530)
T ss_pred HHHHHHhhheEEecCCceeEecCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhccch-H--
Confidence 4688899999998888888888888877666665552211 11111111224455566655444333 1
Q ss_pred HhhhHHHhhcccccCCCCChhhhhHhhHHHHHHHHHHHHHhh-------c--CCCcccccCCCC--CCCCccccCCcccc
Q 046345 91 IIDDEDRAKKSCFKGLCPNLISRYKLSKQAATTAEAAANLVG-------E--GNFSNVSFRPTP--RSTGHIQVKDYEAF 159 (1462)
Q Consensus 91 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-------~--~~~~~~~~~~~~--~~~~~~~~~~~~~~ 159 (1462)
++.+...++++++.+ . .......+.+++ .........+...-
T Consensus 278 ---------------------------k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~ 330 (530)
T COG0488 278 ---------------------------KKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKG 330 (530)
T ss_pred ---------------------------HHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccc
Confidence 122222222222221 1 110101112111 11222333443333
Q ss_pred c-hhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc------CCCeEEEEEecC-C------------
Q 046345 160 D-SRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK------SFDKVVMAEVTQ-T------------ 219 (1462)
Q Consensus 160 ~-gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~------~f~~~~wv~~~~-~------------ 219 (1462)
+ +....++.+...+..++ .|+|+|++|+|||||.+.+........ .--.+.++.=.. .
T Consensus 331 y~~~~~l~~~~s~~i~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~ 408 (530)
T COG0488 331 YDGGRLLLKDLSFRIDRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELS 408 (530)
T ss_pred cCCCceeecCceEEecCCC--EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHH
Confidence 3 33334444444444566 899999999999999999977663221 001122222111 0
Q ss_pred --C-C-HHHHHHHHHHHhCCCCCCC------cChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccC
Q 046345 220 --P-D-HQKIQDKLAFDLGMEFGLN------ENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKD 289 (1462)
Q Consensus 220 --~-~-~~~~~~~i~~~l~~~~~~~------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~ 289 (1462)
+ + .....+..+.+++...+.. -+.-++.+..+..+.-.++-+||||++.|..|.+.+...-..+.+|
T Consensus 409 ~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--- 485 (530)
T COG0488 409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--- 485 (530)
T ss_pred hhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---
Confidence 0 1 1233444445555443321 2334555556666656899999999999998887664332333222
Q ss_pred CCCCcEEEEEecchhhhhhccCCCceEEccC
Q 046345 290 DESGCTIILTSRNRDLLEKDMKSQKNFLIEV 320 (1462)
Q Consensus 290 ~~~gs~IlvTtr~~~v~~~~~~~~~~~~l~~ 320 (1462)
+|+ ||++||++.... ..+.+.+.+++
T Consensus 486 --~Gt-vl~VSHDr~Fl~--~va~~i~~~~~ 511 (530)
T COG0488 486 --EGT-VLLVSHDRYFLD--RVATRIWLVED 511 (530)
T ss_pred --CCe-EEEEeCCHHHHH--hhcceEEEEcC
Confidence 454 999999998873 23345666554
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=2.2e-09 Score=121.31 Aligned_cols=174 Identities=21% Similarity=0.303 Sum_probs=123.5
Q ss_pred EEccCCCCccCCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEec
Q 046345 523 ISLPHRDIEVLPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLH 601 (1462)
Q Consensus 523 lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 601 (1462)
+.++.|...++|.. ..|-.|..+.+..|. +..+|.. +..+..|.+|||+.|.+..+|..++.|+ |++|.++
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~------~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNC------IRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhcc------ceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 34455555566543 234556666666555 4555554 4677888888888888888887776654 7888888
Q ss_pred CcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccccc
Q 046345 602 WCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKV 680 (1462)
Q Consensus 602 ~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 680 (1462)
+|+++. |..++.+.+|..||.+.|++..+|..++.|..|+.|++..| .+..+|++ +. --.|..||++.|.+.
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~-~LpLi~lDfScNkis---- 224 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LC-SLPLIRLDFSCNKIS---- 224 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-Hh-CCceeeeecccCcee----
Confidence 888877 77788788888888888888888888888888888888876 67777776 55 445777887777653
Q ss_pred cCCCccchHhhhcCCCCcEEEEEeecccCCCccccc
Q 046345 681 EGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVF 716 (1462)
Q Consensus 681 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~ 716 (1462)
..+..+.+|++|++|-|.+|....-|.....
T Consensus 225 -----~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 225 -----YLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred -----ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 3456677888888888888877776665443
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.60 E-value=3e-08 Score=116.06 Aligned_cols=136 Identities=21% Similarity=0.190 Sum_probs=67.6
Q ss_pred hhhcCCcceEEEecCCCCCC-CCcccCCCCc---CcEEEecCcccCC------ccccccc-cCCcEEEecCCCCC-----
Q 046345 565 FFEGTEGLKVLDFTGIHFSS-LPSSLGRLTS---LQTLCLHWCELED------IAIVGQL-KKLEILSFRDSDIK----- 628 (1462)
Q Consensus 565 ~f~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~---Lr~L~L~~~~l~~------~~~i~~L-~~L~~L~L~~~~i~----- 628 (1462)
.|..+++|+.|++++|.+.. .+..+..+.+ |++|++++|.+.. ...+..+ .+|+.|++++|.++
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 34556666666666666642 2333333333 6666666666552 1334445 66666666666655
Q ss_pred ccchhhccccccCEEccCCcccccc-----cCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEE
Q 046345 629 ELPLEIGLLTRLSLLDLSDCWSLEV-----IAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIH 703 (1462)
Q Consensus 629 ~lp~~i~~L~~L~~L~L~~~~~l~~-----~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~ 703 (1462)
.++..+..+.+|++|++++| .+.. ++.. +..+++|++|++++|.+.... .......+..+++|++|+++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~----~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 156 ALAKALRANRDLKELNLANN-GIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDEG----ASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHH-HHhCCCCCEEeccCCccChHH----HHHHHHHhcccCCCCEEecC
Confidence 23334445556666666665 3331 1111 333446666666655431100 01122333445556666555
Q ss_pred eec
Q 046345 704 VRD 706 (1462)
Q Consensus 704 ~~~ 706 (1462)
.+.
T Consensus 230 ~n~ 232 (319)
T cd00116 230 DNN 232 (319)
T ss_pred CCc
Confidence 443
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=4.4e-09 Score=118.94 Aligned_cols=182 Identities=21% Similarity=0.274 Sum_probs=145.2
Q ss_pred EEccCCCCccCCcc---CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEE
Q 046345 523 ISLPHRDIEVLPER---LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLC 599 (1462)
Q Consensus 523 lsl~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~ 599 (1462)
+.+++-....+|.. ..+..-...+++.|+ ...+|.. +..+..|..|.|..|.|..+|..+++|..|.||+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR------~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ 127 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNR------FSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLD 127 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccc------cccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhh
Confidence 44444444444432 334444556677776 4667766 5778889999999999999999999999999999
Q ss_pred ecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccc
Q 046345 600 LHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWD 678 (1462)
Q Consensus 600 L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 678 (1462)
|+.|.++. |..++.|. |+.|-+++|+++.+|..++.+..|.+|+.+.| .+..+|++ ++.|.+|+.|.+..|.+.
T Consensus 128 ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~-- 202 (722)
T KOG0532|consen 128 LSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE-- 202 (722)
T ss_pred hccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhh--
Confidence 99999998 78888765 99999999999999999999999999999998 78889988 899999999998877653
Q ss_pred cccCCCccchHhhhcCCCCcEEEEEeecccCCCcc-ccccccceeEE
Q 046345 679 KVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD-LVFMELERYRI 724 (1462)
Q Consensus 679 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~i 724 (1462)
..+.++..| .|..|++++|.+..+|-+ -.+.+|+.|.+
T Consensus 203 -------~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 203 -------DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred -------hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeee
Confidence 355777755 488999999999988876 34455555543
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=2.2e-06 Score=102.48 Aligned_cols=177 Identities=15% Similarity=0.188 Sum_probs=108.6
Q ss_pred CccccchhHHHHHH---HHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQD---VVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~---l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 231 (1462)
....++|++..+.. +..++..+..+.+.++|++|+||||+|+.+++... .. |+.++.......-.+.+
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~-----~~~l~a~~~~~~~ir~i-- 80 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--AP-----FEALSAVTSGVKDLREV-- 80 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----EEEEecccccHHHHHHH--
Confidence 34568899888766 77888888878899999999999999999998763 22 22222221111111111
Q ss_pred HhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEE--Eecchhhh-
Q 046345 232 DLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIIL--TSRNRDLL- 306 (1462)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~Ilv--Ttr~~~v~- 306 (1462)
..........+++.+|++||++... ..+.+... -..|..++| ||.+....
T Consensus 81 ---------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~----------le~~~iilI~att~n~~~~l 135 (413)
T PRK13342 81 ---------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPH----------VEDGTITLIGATTENPSFEV 135 (413)
T ss_pred ---------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHH----------hhcCcEEEEEeCCCChhhhc
Confidence 1111111223678899999998652 22222111 112444444 34443221
Q ss_pred -hhccCCCceEEccCCCHHHHHHHHHHHhCCCC-CC-CCchHHHHHHHHHccCCchHHHHHH
Q 046345 307 -EKDMKSQKNFLIEVLSKDEALQLFECIVGDSA-KT-SAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 307 -~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~-~~-~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
.........+++.+++.++.+.++.+.+.... .. .-.++..+.|++.++|-|..+..+.
T Consensus 136 ~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 136 NPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred cHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 12233446899999999999999998764211 11 3346778889999999987665443
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=3.3e-06 Score=102.23 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=115.3
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccC-------------------CCeEEEE
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKS-------------------FDKVVMA 214 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~-------------------f~~~~wv 214 (1462)
....++|.+..++.|..++..+++ +.+.++|..|+||||+|+.+++...-... |..++++
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 346789999999999999987664 46689999999999999999998742111 1112222
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH----HccCcEEEEEcCCccccc--ccccCCCCcccccccc
Q 046345 215 EVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL----KKEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERK 288 (1462)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~ 288 (1462)
+...... .+.++.+.+.. ..++.-++|+|+++.... ++.+.. .+.
T Consensus 94 DAas~rg----------------------VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLK-------tLE 144 (830)
T PRK07003 94 DAASNRG----------------------VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLK-------TLE 144 (830)
T ss_pred ccccccc----------------------HHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHH-------HHH
Confidence 2221111 12222222222 124566999999986532 333322 222
Q ss_pred CCCCCcEEEEEecchhhh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc-hHHHHHH
Q 046345 289 DDESGCTIILTSRNRDLL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP-VALSTIA 365 (1462)
Q Consensus 289 ~~~~gs~IlvTtr~~~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~ 365 (1462)
......++|++|++.... .........+++..++.++..+.+.+.+.... ..-..+....|++.++|.. -|+..+-
T Consensus 145 EPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 145 EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 244577888888776544 22344456899999999999999998875322 2234677888999998865 4555433
No 45
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=3.3e-06 Score=104.39 Aligned_cols=180 Identities=13% Similarity=0.204 Sum_probs=112.3
Q ss_pred CccccchhHHHHHHHHHHhccCCceE-EEEEecCCCcHHHHHHHHHHHHhhccCC-------------------CeEEEE
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVMEDKSF-------------------DKVVMA 214 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~v-v~I~G~~GvGKTtLa~~~~~~~~~~~~f-------------------~~~~wv 214 (1462)
....++|.+..++.|..++..+++.- +.++|+.|+||||+|+.+++...-.... .-++++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 34678899999999999998877654 5899999999999999999987422111 111222
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH----HccCcEEEEEcCCccc--ccccccCCCCcccccccc
Q 046345 215 EVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL----KKEKKVLIILDNIWTK--LELDVVGIPYGDVEKERK 288 (1462)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~ 288 (1462)
+..... ..+.++.+.+.+ ..+++-++|+|++... ...+.+...+ .
T Consensus 94 dAas~~----------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtL-------E 144 (944)
T PRK14949 94 DAASRT----------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTL-------E 144 (944)
T ss_pred cccccc----------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHH-------h
Confidence 111111 112222222222 1367789999999765 2233322111 1
Q ss_pred CCCCCcEEEEEecchh-hhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 289 DDESGCTIILTSRNRD-LLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 289 ~~~~gs~IlvTtr~~~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
......++|++|.+.. +......+...+++.+++.++..+.+.+.+... ......+.+..|++.++|.|.-+..+
T Consensus 145 EPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 145 EPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1334566666655443 332234445789999999999999998877432 22334567888999999988644433
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=2e-08 Score=104.31 Aligned_cols=129 Identities=23% Similarity=0.204 Sum_probs=97.6
Q ss_pred CCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCc-cccccccC
Q 046345 538 QCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDI-AIVGQLKK 616 (1462)
Q Consensus 538 ~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~-~~i~~L~~ 616 (1462)
.+..|..+++++|. +..+..+ .+-++.+|+|++|+|.|..+-. +..|++|+.|||++|.+... ..-.+|-|
T Consensus 282 TWq~LtelDLS~N~------I~~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGNL------ITQIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred hHhhhhhccccccc------hhhhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcC
Confidence 35567778888776 5666665 3667888899999988877644 78888889999998888774 44457888
Q ss_pred CcEEEecCCCCCccchhhccccccCEEccCCcccccccC-ccccccccccceeeccCcccc
Q 046345 617 LEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIA-PNVISKLSRLEELYMGGSFSQ 676 (1462)
Q Consensus 617 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~~ 676 (1462)
.++|.|++|.|..+ .++++|++|.+||+++| ++..+. -..||+|+.|+++.+.+|.+.
T Consensus 354 IKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred EeeeehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 88888988888777 57888888999998887 455443 223888889998888887653
No 47
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.47 E-value=1.8e-05 Score=96.07 Aligned_cols=205 Identities=20% Similarity=0.169 Sum_probs=119.7
Q ss_pred cccchhHHHHHHHHHHhcc-----CCceEEEEEecCCCcHHHHHHHHHHHHhhc---cCCC--eEEEEEecCCCCHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQVMED---KSFD--KVVMAEVTQTPDHQKIQ 226 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~-----~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~---~~f~--~~~wv~~~~~~~~~~~~ 226 (1462)
..+.||++++++|...|.. +...++-|+|++|+|||+.++.|.+..... .... .+++|++....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 3577999999999988762 223467799999999999999999877421 1222 36778877777888899
Q ss_pred HHHHHHhCCCCC-CCcChHHHHHHHHHHHHc--cCcEEEEEcCCccccc--ccccCCCCcccccccc-CCCCCcEEEE--
Q 046345 227 DKLAFDLGMEFG-LNENTFQKAYRLCERLKK--EKKVLIILDNIWTKLE--LDVVGIPYGDVEKERK-DDESGCTIIL-- 298 (1462)
Q Consensus 227 ~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~-~~~~gs~Ilv-- 298 (1462)
..|+.++....+ ......+....++..+.. ....+|||||++.... -+.+ ...+. ....+++|+|
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVL-------YnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVL-------FTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHH-------HHHHHHhhccCCeEEEEE
Confidence 999988843332 122334455566655522 2345899999975421 1111 00010 0123444443
Q ss_pred Eecchhhhh---hcc---CCCceEEccCCCHHHHHHHHHHHhCCCC---CCCCchHHHHHHHHHccCCchHHHHHHHHH
Q 046345 299 TSRNRDLLE---KDM---KSQKNFLIEVLSKDEALQLFECIVGDSA---KTSAIQPIADEIVERCEGLPVALSTIANAL 368 (1462)
Q Consensus 299 Ttr~~~v~~---~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~---~~~~~~~~~~~i~~~~~glPlai~~~~~~l 368 (1462)
+|....... ... -....+...+++.++-.+++..++.... .+..++-+|+.+|..-|..-.||.++-.+.
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 443322210 011 1123477799999999999999885321 111222333433444455666666554443
No 48
>PTZ00202 tuzin; Provisional
Probab=98.43 E-value=6.5e-05 Score=84.71 Aligned_cols=163 Identities=16% Similarity=0.171 Sum_probs=102.0
Q ss_pred cCCccccchhHHHHHHHHHHhcc---CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKD---DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKL 229 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~---~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 229 (1462)
+.+...|+||++++..+...+.+ +..++++|+|++|+|||||++.+..... ...++++.. +..+++..+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHHHH
Confidence 44557899999999999988863 2346999999999999999999997652 123344433 678999999
Q ss_pred HHHhCCCCCCCcChHHHHHHHHHHHH----c-cCcEEEEEcCCc--ccccc--cccCCCCccccccccCCCCCcEEEEEe
Q 046345 230 AFDLGMEFGLNENTFQKAYRLCERLK----K-EKKVLIILDNIW--TKLEL--DVVGIPYGDVEKERKDDESGCTIILTS 300 (1462)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlVlDdv~--~~~~~--~~~~~~~~~l~~~~~~~~~gs~IlvTt 300 (1462)
+.++|.... ....+....+.+.+. . +++.+||+-==+ +.... +.. .+. ....-|+|++--
T Consensus 330 L~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v--~la-------~drr~ch~v~ev 398 (550)
T PTZ00202 330 VKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV--ALA-------CDRRLCHVVIEV 398 (550)
T ss_pred HHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH--HHH-------ccchhheeeeee
Confidence 999998433 222334444433332 2 677777764221 11100 111 011 133456677644
Q ss_pred cchhhh--hhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 301 RNRDLL--EKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 301 r~~~v~--~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
--+..- ....+.-..|.+.+++.++|.+.-....
T Consensus 399 pleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 399 PLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 433222 1233445578999999999988776554
No 49
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=1.5e-05 Score=97.25 Aligned_cols=257 Identities=15% Similarity=0.081 Sum_probs=140.3
Q ss_pred CccccchhHHHHHHHHHHhcc---C-CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKD---D-KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~---~-~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
....++|+++.++.+..|+.. + ..+.+.|+|++|+||||+|+.+++... ++ ++-++.+...+.. ....++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHH
Confidence 346688999999999998863 2 256899999999999999999999872 22 2333444332222 222222
Q ss_pred HHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhh--h
Q 046345 231 FDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE--K 308 (1462)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~--~ 308 (1462)
....... .+...++.+||+||++....-... .....+.+.+. ..+..||+|+.+..... .
T Consensus 86 ~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~-~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 86 GEAATSG---------------SLFGARRKLILLDEVDGIHGNEDR-GGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHhhccC---------------cccCCCCeEEEEecCcccccccch-hHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 2111110 011136789999999764220000 00111111111 23344666665432221 1
Q ss_pred ccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHh-cC---CHHHHHHHHHHHh
Q 046345 309 DMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALK-SK---SLDFWKDALYRLR 384 (1462)
Q Consensus 309 ~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~-~~---~~~~w~~~~~~l~ 384 (1462)
.......+++.+++.++....+.+.+..... .-..++...|++.++|-...+......+. ++ +.+....+..
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~--- 223 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR--- 223 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc---
Confidence 2234568999999999999998887742221 22357789999999986655543333333 22 2333222221
Q ss_pred cCccccccchhhHHHHHHHHhhhccChHHHHHHHHHhcccCCCcccChhHHHHHHhccccccccccHHHH
Q 046345 385 SSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFLLCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLEEA 454 (1462)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~ 454 (1462)
.+....++.++...+..=....+...+.. ..++.+ .+-.|+.+.++....++++.
T Consensus 224 -------~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~~~~~~~~ 278 (482)
T PRK04195 224 -------RDREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKEYDDPEDI 278 (482)
T ss_pred -------CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhccccccCCHHHH
Confidence 11234567777766653222233332222 123333 45689999987654444443
No 50
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.5e-06 Score=97.03 Aligned_cols=192 Identities=11% Similarity=0.186 Sum_probs=109.8
Q ss_pred ccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
...++|.+..++.+...+..++. +.+.++|+.|+||||+|+.+++...-...... .....-....++.....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhcCCC
Confidence 45678999999999998887664 46789999999999999999998742111100 00000000111111000
Q ss_pred CCC----CCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 235 MEF----GLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 235 ~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
... .......+..+.+.+.+. .+++-++|+||++.... ++.+. +.+.......++|++|.+..
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLL-------k~lEe~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALL-------KTLEEPPQHIKFILATTDVE 160 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHH-------HHHhcCCCCeEEEEEcCChH
Confidence 000 000011222333333321 24566999999976532 33322 12222445667777765543
Q ss_pred hh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHH
Q 046345 305 LL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 305 v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 362 (1462)
.. .........+++.+++.++..+.+.+.+.... ..-.++.+..|++.++|.|..+.
T Consensus 161 ~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 32 22234456899999999999988888763221 22235677889999999886433
No 51
>PRK06893 DNA replication initiation factor; Validated
Probab=98.38 E-value=3.4e-06 Score=91.90 Aligned_cols=154 Identities=16% Similarity=0.227 Sum_probs=92.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK 255 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 255 (1462)
...+.+.|+|++|+|||+|++++++....+ ...+.|+++.... .. .....+.+
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~---------------------~~~~~~~~- 89 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YF---------------------SPAVLENL- 89 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hh---------------------hHHHHhhc-
Confidence 334578999999999999999999997533 2345666653210 00 00112222
Q ss_pred ccCcEEEEEcCCccc---ccccc-cCCCCccccccccCCCCCcEEEEEecch----------hhhhhccCCCceEEccCC
Q 046345 256 KEKKVLIILDNIWTK---LELDV-VGIPYGDVEKERKDDESGCTIILTSRNR----------DLLEKDMKSQKNFLIEVL 321 (1462)
Q Consensus 256 ~~k~~LlVlDdv~~~---~~~~~-~~~~~~~l~~~~~~~~~gs~IlvTtr~~----------~v~~~~~~~~~~~~l~~L 321 (1462)
.+.-+||+||+|.. .+|+. +...+... ...|..+||+|.+. .+. ........++++++
T Consensus 90 -~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~------~~~~~~illits~~~p~~l~~~~~~L~-sRl~~g~~~~l~~p 161 (229)
T PRK06893 90 -EQQDLVCLDDLQAVIGNEEWELAIFDLFNRI------KEQGKTLLLISADCSPHALSIKLPDLA-SRLTWGEIYQLNDL 161 (229)
T ss_pred -ccCCEEEEeChhhhcCChHHHHHHHHHHHHH------HHcCCcEEEEeCCCChHHccccchhHH-HHHhcCCeeeCCCC
Confidence 23349999999874 33432 11111111 22355565544432 222 23444568999999
Q ss_pred CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHH
Q 046345 322 SKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 322 ~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
+.++.++++++.+.... -.-.+++..-|++++.|-..++..+-
T Consensus 162 d~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred CHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999998885322 22336778888998887666554433
No 52
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=6.1e-06 Score=98.97 Aligned_cols=193 Identities=14% Similarity=0.166 Sum_probs=111.9
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|.+...+.+..++..++. +.+.++|+.|+||||+|+.+++...-.... ... ....-...+.|...-
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~------~~~-pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGV------TST-PCEVCATCKAVNEGR 85 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCC------CCC-CCccCHHHHHHhcCC
Confidence 456789999999999999987764 577899999999999999999987321110 000 000001111111100
Q ss_pred CCCC---C-CCcChHHHHHHHHHHH----HccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 234 GMEF---G-LNENTFQKAYRLCERL----KKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 234 ~~~~---~-~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
.... + ......+.++.+.... ..++.-++|+|++.... ..+.+. +++.....+.++|++|.+.
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALL-------KtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALL-------KTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHH-------HHHhcCCCCcEEEEEECCh
Confidence 0000 0 0001122222222222 13567799999997642 222222 2222244566788777654
Q ss_pred hhh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHH
Q 046345 304 DLL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 304 ~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 362 (1462)
.-. .....+...+++.+++.++..+.+.+.+.... ..-..+....|++.++|-+..+.
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 332 22334556899999999999999988774322 22335677889999999775443
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=4.4e-06 Score=99.85 Aligned_cols=198 Identities=13% Similarity=0.177 Sum_probs=112.6
Q ss_pred CccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHH-
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFD- 232 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~- 232 (1462)
....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++...-... +...-+. ......-.....|...
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEIDAGR 91 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHHHcCC
Confidence 3467899999999999999877654 5689999999999999999998842110 0000000 0000000111111100
Q ss_pred ----hCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecc
Q 046345 233 ----LGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRN 302 (1462)
Q Consensus 233 ----l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~ 302 (1462)
+..... .....+.++.+.+... .++..++|+|+++... ..+.+...+. ....++++|++|.+
T Consensus 92 hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-------EPP~~v~FILaTte 163 (700)
T PRK12323 92 FVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-------EPPEHVKFILATTD 163 (700)
T ss_pred CCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-------cCCCCceEEEEeCC
Confidence 000000 0111222333333321 3567799999998652 2333222221 13455666665554
Q ss_pred h-hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 303 R-DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 303 ~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
. .+......+...+++..++.++..+.+.+.+.... .....+..+.|++.++|.|.....
T Consensus 164 p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4 34333344556899999999999999988774322 222345678899999998865443
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=3.7e-07 Score=109.96 Aligned_cols=143 Identities=28% Similarity=0.395 Sum_probs=70.9
Q ss_pred cceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcc
Q 046345 571 GLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCW 649 (1462)
Q Consensus 571 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 649 (1462)
+|+.|++++|.+..+|..++.+++|+.|++++|.+.+ +...+.+.+|+.|++++|.+..+|..++.+.+|++|.+++|.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 5555555555555555555555555555555555555 333335555555555555555555555555555555555542
Q ss_pred cccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEE
Q 046345 650 SLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRI 724 (1462)
Q Consensus 650 ~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i 724 (1462)
....+.. +.++.++..|.+.++... ..+..++.+.+++.|+++.+.+..++......+++.+.+
T Consensus 221 -~~~~~~~-~~~~~~l~~l~l~~n~~~---------~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~ 284 (394)
T COG4886 221 -IIELLSS-LSNLKNLSGLELSNNKLE---------DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284 (394)
T ss_pred -ceecchh-hhhcccccccccCCceee---------eccchhccccccceeccccccccccccccccCccCEEec
Confidence 2222222 445555555544433321 012334445555555555555554444333444444443
No 55
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.32 E-value=3.7e-05 Score=82.84 Aligned_cols=149 Identities=15% Similarity=0.267 Sum_probs=94.3
Q ss_pred ccccchhHHHHH---HHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 046345 156 YEAFDSRMKVFQ---DVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFD 232 (1462)
Q Consensus 156 ~~~~~gr~~~~~---~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 232 (1462)
...+||.+..+- -|...+..++++.+.+||++|+||||||+.++....... ..+|..+.......-.+.|.++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 344555554332 233445578889999999999999999999999875322 5677777654332223333321
Q ss_pred hCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEE--Eecchhhh--
Q 046345 233 LGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIIL--TSRNRDLL-- 306 (1462)
Q Consensus 233 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~Ilv--Ttr~~~v~-- 306 (1462)
. ... ..+ ..+|.+|.+|+|..- .+-+.+ .| . -.+|..++| ||.++..-
T Consensus 213 a--------------q~~-~~l-~krkTilFiDEiHRFNksQQD~f-LP--~-------VE~G~I~lIGATTENPSFqln 266 (554)
T KOG2028|consen 213 A--------------QNE-KSL-TKRKTILFIDEIHRFNKSQQDTF-LP--H-------VENGDITLIGATTENPSFQLN 266 (554)
T ss_pred H--------------HHH-Hhh-hcceeEEEeHHhhhhhhhhhhcc-cc--e-------eccCceEEEecccCCCccchh
Confidence 1 011 112 368899999999643 343433 22 2 446776665 77776443
Q ss_pred hhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 307 EKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 307 ~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
........++.+++|+.++...++.+..
T Consensus 267 ~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 267 AALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred HHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 2235567799999999999999998744
No 56
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.32 E-value=2.1e-05 Score=101.35 Aligned_cols=267 Identities=15% Similarity=0.214 Sum_probs=152.0
Q ss_pred cchhHHHHHHHHHHhc---cCCceEEEEEecCCCcHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCC---HHHHHHHHH-
Q 046345 159 FDSRMKVFQDVVEAAK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVMED-KSFDKVVMAEVTQTPD---HQKIQDKLA- 230 (1462)
Q Consensus 159 ~~gr~~~~~~l~~~l~---~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~---~~~~~~~i~- 230 (1462)
++||+.+++.|...+. .+...++.+.|.+|+|||+++++|......+ ..|-...+-....... ..+.+++++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999998887 4666799999999999999999999988543 2221111111111111 111222222
Q ss_pred ------------------HHhCCCCC------------------C----CcChHHHH-----HHHHHHHHccCcEEEEEc
Q 046345 231 ------------------FDLGMEFG------------------L----NENTFQKA-----YRLCERLKKEKKVLIILD 265 (1462)
Q Consensus 231 ------------------~~l~~~~~------------------~----~~~~~~~~-----~~l~~~l~~~k~~LlVlD 265 (1462)
..+|.... . ......+. ..+.......++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22221110 0 00001111 122222334679999999
Q ss_pred CC-ccccc-ccccCCCCcccc--ccccCCCCCcEEEEEecch-hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCC
Q 046345 266 NI-WTKLE-LDVVGIPYGDVE--KERKDDESGCTIILTSRNR-DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKT 340 (1462)
Q Consensus 266 dv-~~~~~-~~~~~~~~~~l~--~~~~~~~~gs~IlvTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 340 (1462)
|+ |.+.. .+-+........ .+ ..+-.-.+.|.+.. ............+.|.||+..+...+.....+...
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~---~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAY---RDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhh---hccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 98 43311 111111100000 00 00111122233322 11222344557899999999999999999987532
Q ss_pred CCchHHHHHHHHHccCCchHHHHHHHHHhcC-------CHHHHHHHHHHHhcCccccccchhhHHHHHHHHhhhccChHH
Q 046345 341 SAIQPIADEIVERCEGLPVALSTIANALKSK-------SLDFWKDALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEE 413 (1462)
Q Consensus 341 ~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 413 (1462)
....+....|.++..|+|+-+..+-..+... +...|..-...+.. .+.-+.+...+..-.+.||. .
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl~kL~~-~ 309 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARLQKLPG-T 309 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHHhcCCH-H
Confidence 2335778899999999999999888877653 23334322222211 11123366678899999996 6
Q ss_pred HHHHHHHhcccCCCcccChhHHHHHH
Q 046345 414 AKSLFLLCGLYSEGHAIQVPSLLRYG 439 (1462)
Q Consensus 414 ~k~cf~~~a~fp~~~~i~~~~Li~~W 439 (1462)
.|+.+...|++-. .|+.+.|...|
T Consensus 310 t~~Vl~~AA~iG~--~F~l~~La~l~ 333 (849)
T COG3899 310 TREVLKAAACIGN--RFDLDTLAALA 333 (849)
T ss_pred HHHHHHHHHHhCc--cCCHHHHHHHH
Confidence 8999999999875 56666665544
No 57
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.32 E-value=4.9e-07 Score=105.80 Aligned_cols=155 Identities=21% Similarity=0.181 Sum_probs=89.3
Q ss_pred CCCcceEEEEeecCCCCCccccccChhhhhcCCc---ceEEEecCCCCCC-----CCcccCCC-CcCcEEEecCcccCC-
Q 046345 538 QCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEG---LKVLDFTGIHFSS-----LPSSLGRL-TSLQTLCLHWCELED- 607 (1462)
Q Consensus 538 ~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~---Lr~L~Ls~~~i~~-----lp~~i~~L-~~Lr~L~L~~~~l~~- 607 (1462)
.+++|+.|.+.++.. .......|..+.. |++|++++|.+.. +..++..+ ++|+.|++++|.++.
T Consensus 79 ~~~~L~~L~l~~~~~------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 79 KGCGLQELDLSDNAL------GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred hcCceeEEEccCCCC------ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 356777777766653 2112222333333 7777777777652 33455666 777777777777663
Q ss_pred -----ccccccccCCcEEEecCCCCC-----ccchhhccccccCEEccCCcccccccC----ccccccccccceeeccCc
Q 046345 608 -----IAIVGQLKKLEILSFRDSDIK-----ELPLEIGLLTRLSLLDLSDCWSLEVIA----PNVISKLSRLEELYMGGS 673 (1462)
Q Consensus 608 -----~~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~~p----~~~l~~L~~L~~L~l~~~ 673 (1462)
+..+..+.+|++|++++|.++ .++..+..+++|++|++++| .+.... ...+.++++|++|++++|
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 244556667777777777766 23444555667777777776 333221 112456677777777776
Q ss_pred ccccccccCCCccchHhhh-----cCCCCcEEEEEeecc
Q 046345 674 FSQWDKVEGGSNARLDELK-----ELSKLTTLEIHVRDA 707 (1462)
Q Consensus 674 ~~~~~~~~~~~~~~~~~L~-----~l~~L~~L~l~~~~~ 707 (1462)
.... ..+..+. ..+.|+.|+++++.+
T Consensus 232 ~l~~--------~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 232 NLTD--------AGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred cCch--------HHHHHHHHHHhccCCCceEEEccCCCC
Confidence 5421 1112221 135777777776644
No 58
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.2e-05 Score=92.43 Aligned_cols=176 Identities=14% Similarity=0.210 Sum_probs=112.9
Q ss_pred cccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHh----hccCCCeEEEEEe-cCCCCHHHHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVM----EDKSFDKVVMAEV-TQTPDHQKIQDKLA 230 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~----~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 230 (1462)
..++|.+...+.+..++..++. +.+.++|+.|+||||+|+.+++... ...|+|...|... +....+.++. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 4567999999999999987654 4678999999999999999999762 2346666555442 2222332321 222
Q ss_pred HHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecchhhh-h
Q 046345 231 FDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-E 307 (1462)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~ 307 (1462)
+.+.... ..+++-++|+|+++.. ..++.+...+.+ ...++.+|++|.+.+.. .
T Consensus 83 ~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-------pp~~t~~il~~~~~~~ll~ 138 (313)
T PRK05564 83 EEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-------PPKGVFIILLCENLEQILD 138 (313)
T ss_pred HHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcC-------CCCCeEEEEEeCChHhCcH
Confidence 2221111 1256667777876543 344444333332 56788888888766543 2
Q ss_pred hccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHH
Q 046345 308 KDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 308 ~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 362 (1462)
........+++.+++.++....+.+.... ...+.++.++..++|.|..+.
T Consensus 139 TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 139 TIKSRCQIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHhhceeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 22344568999999999998888765431 123457788999999987554
No 59
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=8.3e-05 Score=92.64 Aligned_cols=201 Identities=14% Similarity=0.130 Sum_probs=107.1
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCC---CeEEEEEecCC---CCHHHHHHHH
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSF---DKVVMAEVTQT---PDHQKIQDKL 229 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~~i 229 (1462)
...++|++..+..+...+.......+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+...+
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 45678999999988888876666789999999999999999999877533332 12234444321 1222221111
Q ss_pred ---------------HHHhCCCCC-----------------CCcChHHHHHHHHHHHHccCcEEEEEcCCccc--ccccc
Q 046345 230 ---------------AFDLGMEFG-----------------LNENTFQKAYRLCERLKKEKKVLIILDNIWTK--LELDV 275 (1462)
Q Consensus 230 ---------------~~~l~~~~~-----------------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~ 275 (1462)
+...+.... ...-....+..+...+ .++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~L-e~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVL-EDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHH-hhCeEEeecceeccCCcccchh
Confidence 111111100 0111122344455555 356666665554433 23444
Q ss_pred cCCCCccccccccCCCCCcEEEE--Eecchhhhh-hccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHH
Q 046345 276 VGIPYGDVEKERKDDESGCTIIL--TSRNRDLLE-KDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVE 352 (1462)
Q Consensus 276 ~~~~~~~l~~~~~~~~~gs~Ilv--Ttr~~~v~~-~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~ 352 (1462)
+...+.. ..+...|++ ||++..... ........+.+.+++.+|.+.++.+.+..... .-..++.+.|++
T Consensus 312 ik~~~~~-------~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls~eal~~L~~ 383 (615)
T TIGR02903 312 IKKLFEE-------GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLAAGVEELIAR 383 (615)
T ss_pred hhhhccc-------CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHH
Confidence 4333332 333344444 566543321 11223457889999999999999987752211 111344444444
Q ss_pred HccCCchHHHHHH
Q 046345 353 RCEGLPVALSTIA 365 (1462)
Q Consensus 353 ~~~glPlai~~~~ 365 (1462)
....-+.|+..++
T Consensus 384 ys~~gRraln~L~ 396 (615)
T TIGR02903 384 YTIEGRKAVNILA 396 (615)
T ss_pred CCCcHHHHHHHHH
Confidence 4433344444443
No 60
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.30 E-value=1.3e-06 Score=97.24 Aligned_cols=291 Identities=23% Similarity=0.245 Sum_probs=183.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
.+-++++|.|||||||++-.+.. .+ ..+-+.+.++......+...+.-.++..++......++ ....+...+ .+
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~-~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~---~~~~~~~~~-~~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AA-SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDS---AVDTLVRRI-GD 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hh-hhcccceeeeeccccCchhHhHHHHHhhcccccccchH---HHHHHHHHH-hh
Confidence 35899999999999999999999 43 23445677888888778888877778778777652222 233344444 47
Q ss_pred CcEEEEEcCCccccccc-ccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceEEccCCCHH-HHHHHHHHHhC
Q 046345 258 KKVLIILDNIWTKLELD-VVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNFLIEVLSKD-EALQLFECIVG 335 (1462)
Q Consensus 258 k~~LlVlDdv~~~~~~~-~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~~l~~L~~~-ea~~lf~~~~~ 335 (1462)
++.++|+||.....+-- .....+- .+...-.|+.|+|..-. ......+.+.+|+.. ++.++|...+.
T Consensus 88 rr~llvldncehl~~~~a~~i~all-------~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~ 156 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALL-------GACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAV 156 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHH-------ccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHH
Confidence 89999999987653311 1111111 14455578889987643 344567778888765 79999987763
Q ss_pred CC----CCCCCchHHHHHHHHHccCCchHHHHHHHHHhcCCHHHHHHHHHH----HhcCccccccchhhHHHHHHHHhhh
Q 046345 336 DS----AKTSAIQPIADEIVERCEGLPVALSTIANALKSKSLDFWKDALYR----LRSSNAREIHGMRANVFTSIELSYN 407 (1462)
Q Consensus 336 ~~----~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~----l~~~~~~~~~~~~~~~~~~l~~sy~ 407 (1462)
.. .-.........+|.++..|.|++|..+++..+.-...+-...++. +... .....-........+.+||.
T Consensus 157 ~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~ 235 (414)
T COG3903 157 LVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYA 235 (414)
T ss_pred HhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhH
Confidence 21 123344678899999999999999999999887654443333222 2211 11111224567888999999
Q ss_pred ccChHHHHHHHHHhcccCCCcccChhHHHHHHhccccccccccHHHHHHHHHHHHHHHHHccccccC--CCCCcEEEcch
Q 046345 408 LLEIEEAKSLFLLCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLEEARSRVHTLIDILKASCLLSDG--DAEDEVKMHDI 485 (1462)
Q Consensus 408 ~L~~~~~k~cf~~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~--~~~~~~~mH~l 485 (1462)
-|.. -.+-.|.-++.|...+.-. ...|.+.|-... ...-.....+..+++.+++... ...-.|+.-+-
T Consensus 236 lLtg-we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT 305 (414)
T COG3903 236 LLTG-WERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLET 305 (414)
T ss_pred hhhh-HHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHH
Confidence 9986 4688888999998755444 233444442210 0111112234456677766422 23345677777
Q ss_pred HHHHHHHHhcc
Q 046345 486 IHVVAVSIATE 496 (1462)
Q Consensus 486 v~~~a~~~~~~ 496 (1462)
+|.|+..+..+
T Consensus 306 ~r~YalaeL~r 316 (414)
T COG3903 306 GRRYALAELHR 316 (414)
T ss_pred HHHHHHHHHHh
Confidence 77777766544
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=5.3e-07 Score=108.59 Aligned_cols=146 Identities=27% Similarity=0.305 Sum_probs=69.6
Q ss_pred cEEEEccCCCCccCCccCCCC--cceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 520 PIAISLPHRDIEVLPERLQCP--RLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 520 ~r~lsl~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
...+.+.++.+..++...... +|+.|++.++. +..+|.. ...++.|+.|++++|.+..+|...+.+.+|+.
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~------i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK------IESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccc------hhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 444555555555555443332 45555555444 2333211 34455555555555555555554445555555
Q ss_pred EEecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcc
Q 046345 598 LCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 598 L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
|++++|.+.. |..++.+.+|++|.+++|.+..+|..+.++.++..|.+.++ .+..++.. ++++.+|+.|++++|.
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~-~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPES-IGNLSNLETLDLSNNQ 266 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccch-hccccccceecccccc
Confidence 5555555555 33334444455555555544444444555555555554443 23332222 4455555555555443
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.29 E-value=8.2e-06 Score=96.02 Aligned_cols=199 Identities=17% Similarity=0.171 Sum_probs=112.5
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCC-eEEEEEecCCCCH-HHHHH---HHH
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFD-KVVMAEVTQTPDH-QKIQD---KLA 230 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~---~i~ 230 (1462)
...++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++.... ..+. ..+.++++...+. ..... ...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhcCcchh
Confidence 3567899999999999998887777899999999999999999988742 2222 2344444321100 00000 000
Q ss_pred HHhCCCCCCCcChHHHHHHHHHHHH-----ccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 231 FDLGMEFGLNENTFQKAYRLCERLK-----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~-----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
..++..........+....+.+... .+.+-++|+||+..... ...+ .+++......+++|+|+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L-------~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQAL-------RRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHH-------HHHHHhccCCCeEEEEeCCh
Confidence 0000000000111222333322221 13455899999965421 1111 11111133456788777544
Q ss_pred hhh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 304 DLL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 304 ~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
... .........+++.+++.++....+.+.+..... .-..+.+..+++.++|.+..+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 322 112233457899999999999999887642221 23367788899999887665543
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.2e-05 Score=96.91 Aligned_cols=194 Identities=14% Similarity=0.157 Sum_probs=110.4
Q ss_pred ccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
...++|.+...+.+..++..++.. .+.++|+.|+||||+|+.+++...-.+.+....|.+.+.. .+......-...+.
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 456789999999999998877654 5699999999999999999998843222221222221100 00000000000000
Q ss_pred CCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecch-hhhh
Q 046345 235 MEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNR-DLLE 307 (1462)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~-~v~~ 307 (1462)
.. .....+.++.+.+.+. .+++-++|+|+++... .++.+ ++++......+.+|++|... .+..
T Consensus 92 ~~---~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naL-------Lk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 92 AA---SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNAL-------LKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred cc---ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHH-------HHHHHhCCCCEEEEEEcCChhhCCh
Confidence 00 0111222222322221 2567799999997542 23322 22222233455666666543 3322
Q ss_pred hccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 308 KDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 308 ~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
........+++.+++.++..+.+.+.+..... .-..+.+..|++.++|.+.-+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR-EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 23344568999999999999999987742221 224567889999999988644
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2e-05 Score=94.31 Aligned_cols=184 Identities=15% Similarity=0.204 Sum_probs=109.5
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccC-------------------CCeEEEE
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKS-------------------FDKVVMA 214 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~-------------------f~~~~wv 214 (1462)
....++|.+.....+...+..++. +.+.++|++|+||||+|+.+++....... ...++.+
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 346788999998888888887776 45789999999999999999998632110 0112222
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH----HccCcEEEEEcCCcccc--cccccCCCCcccccccc
Q 046345 215 EVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL----KKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERK 288 (1462)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~ 288 (1462)
+.+....... ++.+.+.. ..+++-++|+|++.... ..+.+. +++.
T Consensus 92 ~aa~~~gid~----------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LL-------k~LE 142 (472)
T PRK14962 92 DAASNRGIDE----------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALL-------KTLE 142 (472)
T ss_pred eCcccCCHHH----------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHH-------HHHH
Confidence 2222211211 11222211 12566799999987542 222221 1111
Q ss_pred CCCCCcEEEEEecc-hhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccC-CchHHHHHHH
Q 046345 289 DDESGCTIILTSRN-RDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEG-LPVALSTIAN 366 (1462)
Q Consensus 289 ~~~~gs~IlvTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~ 366 (1462)
.......+|++|.+ ..+......+...+++.+++.++....+.+.+.... ..-.++....|++.++| ++.|+..+..
T Consensus 143 ~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 143 EPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred hCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 12234444444444 333322344556899999999999999888774221 12235677889987765 5677776655
Q ss_pred HH
Q 046345 367 AL 368 (1462)
Q Consensus 367 ~l 368 (1462)
+.
T Consensus 222 l~ 223 (472)
T PRK14962 222 VW 223 (472)
T ss_pred HH
Confidence 43
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.6e-05 Score=95.40 Aligned_cols=194 Identities=14% Similarity=0.160 Sum_probs=109.5
Q ss_pred ccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCe-EEEEEecCCCCHHHHHHHHHHHh
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDK-VVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
...++|.+..+..+...+..++. +.+.++|+.|+||||+|+.+++...-...... -.+..+... .....+....
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 45678999999999888777654 57889999999999999999998742111100 000000000 0000110000
Q ss_pred CCCC---C-CCcChHHHHHHHHHHHH----ccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEe-cc
Q 046345 234 GMEF---G-LNENTFQKAYRLCERLK----KEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTS-RN 302 (1462)
Q Consensus 234 ~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTt-r~ 302 (1462)
.... + ......+.++.+.+... .+++.++|+||++.. ..++.+.. ++......+++|++| +.
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk-------~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLK-------TLEEPPPHIIFIFATTEV 168 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHH-------HHhhcCCCEEEEEEeCCh
Confidence 0000 0 00111222222322221 256779999999864 23333322 222244556666544 44
Q ss_pred hhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 303 RDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 303 ~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
..+..........+++.+++.++....+.+.+.... ..-..+....|++.++|.+.-+
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-i~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-LKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 444332334456899999999999999998885322 2223566788999999977544
No 66
>PLN03025 replication factor C subunit; Provisional
Probab=98.27 E-value=6.1e-06 Score=95.18 Aligned_cols=181 Identities=13% Similarity=0.109 Sum_probs=106.2
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCC-eEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFD-KVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|.++.++.+..++..+..+.+.++|++|+||||+|+.+++...- ..|. .++-++.+...... ..+++.+.+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHH-HHHHHHHHH
Confidence 34667899999999988888877777889999999999999999998742 2222 12222222222211 111111111
Q ss_pred CCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEecchhhh-hhcc
Q 046345 234 GMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EKDM 310 (1462)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~~~ 310 (1462)
..... ....++.-++|+||++.... ...+. ++.......+++++++...... ....
T Consensus 89 ~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~-------~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 89 AQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALR-------RTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred Hhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHH-------HHHhcccCCceEEEEeCCccccchhHH
Confidence 00000 00024567999999976522 12221 1111134456777777543222 1122
Q ss_pred CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch
Q 046345 311 KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV 359 (1462)
Q Consensus 311 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 359 (1462)
.....+++.+++.++....+...+..... .-..+....|++.++|-..
T Consensus 148 SRc~~i~f~~l~~~~l~~~L~~i~~~egi-~i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 148 SRCAIVRFSRLSDQEILGRLMKVVEAEKV-PYVPEGLEAIIFTADGDMR 195 (319)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 33458999999999999999887743221 1225677889999988553
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=7e-06 Score=95.94 Aligned_cols=192 Identities=13% Similarity=0.140 Sum_probs=111.0
Q ss_pred CccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|.+..+..|..++..++.+ .+.++|+.|+||||+|+.+++...-...... ..+....+- ..+....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC----~~i~~g~ 88 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSC----LEITKGI 88 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHH----HHHHccC
Confidence 3466889999999999999887754 5899999999999999999998742111000 001111111 1111111
Q ss_pred CCCC---C-CCcChHHHHHHHHHHHH----ccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEec-c
Q 046345 234 GMEF---G-LNENTFQKAYRLCERLK----KEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSR-N 302 (1462)
Q Consensus 234 ~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr-~ 302 (1462)
.... + ......+.++.+.+.+. .++..++|+|++... ..++++...+.. ......+|++|. .
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-------Pp~~viFILaTte~ 161 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-------PPAHIVFILATTEF 161 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-------CCCceEEEeecCCh
Confidence 1000 0 00111222233333221 356679999999765 234443222211 233455554444 3
Q ss_pred hhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 303 RDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 303 ~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
..+......+...|.+.+++.++..+.+.+.+.... ..-.++....|++.++|.+.-+
T Consensus 162 ~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 162 HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCChHHHH
Confidence 444333344456799999999999988888764222 2234567889999999987543
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.1e-05 Score=97.07 Aligned_cols=185 Identities=14% Similarity=0.188 Sum_probs=109.2
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhcc-------------------CCCeEEEE
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDK-------------------SFDKVVMA 214 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~f~~~~wv 214 (1462)
....++|.+..++.+..++..++. +.+.++|+.|+||||+|+.+++...-.. .|...+++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 346678999999999999987665 4578999999999999999998763211 11122233
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccc--cccccCCCCccccccccCCCC
Q 046345 215 EVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDES 292 (1462)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~ 292 (1462)
+......+.++ +++ ...+...-..+++-++|+||+.... ..+.+. +++.....
T Consensus 94 daas~~gvd~i-r~i-----------------i~~~~~~p~~g~~kViIIDEa~~ls~~a~naLL-------K~LEepp~ 148 (546)
T PRK14957 94 DAASRTGVEET-KEI-----------------LDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALL-------KTLEEPPE 148 (546)
T ss_pred ecccccCHHHH-HHH-----------------HHHHHhhhhcCCcEEEEEechhhccHHHHHHHH-------HHHhcCCC
Confidence 22111111111 111 1111111113677799999987542 222222 22222344
Q ss_pred CcEEEEEecc-hhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch-HHHHHH
Q 046345 293 GCTIILTSRN-RDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV-ALSTIA 365 (1462)
Q Consensus 293 gs~IlvTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 365 (1462)
.+++|++|.+ ..+......+...+++.+++.++....+.+.+.... ..-.++....|++.++|-+. |+..+-
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5656655543 333322344457899999999998888887663222 23345667889999999654 444443
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=1.7e-06 Score=98.31 Aligned_cols=172 Identities=15% Similarity=0.208 Sum_probs=108.1
Q ss_pred ccCCcEEEEecCCCcccccCcCcCCCCCccEEEEcccccceeeeccccccccCceeeeccccccccCcCccccccccCCc
Q 046345 1100 FSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIAFNELKFLELDKLPRLRSFCLENY 1179 (1462)
Q Consensus 1100 l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 1179 (1462)
+..++.|+|++| .++.+ | ....+|++|.+++|++++.+|... +++|+.|.+.+|+++..++.
T Consensus 51 ~~~l~~L~Is~c-~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L----------P~nLe~L~Ls~Cs~L~sLP~--- 112 (426)
T PRK15386 51 ARASGRLYIKDC-DIESL-P---VLPNELTEITIENCNNLTTLPGSI----------PEGLEKLTVCHCPEISGLPE--- 112 (426)
T ss_pred hcCCCEEEeCCC-CCccc-C---CCCCCCcEEEccCCCCcccCCchh----------hhhhhheEccCccccccccc---
Confidence 467899999988 67764 5 345689999999999998877522 57899999999988876543
Q ss_pred cccCCCcceEeeec--ccCcccccCCccccccceeEEeeeccccccccccccchhhhHHHHHHHhhccceEEEEecCCCc
Q 046345 1180 TLEFPSLERFSMKE--CRNMKTFSQGALFTPKLCKVQMIENEEDDLHHWEGNLNSTIQKHYEEMCLNNLEVLEVRNCDSL 1257 (1462)
Q Consensus 1180 ~~~~~~L~~L~l~~--c~~l~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c~~l 1257 (1462)
+|+.|.+.+ |..+..+| ++|+.|.+.++. ..........+ .++|++|++++|..+
T Consensus 113 -----sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n---------~~~~~~lp~~L---PsSLk~L~Is~c~~i 169 (426)
T PRK15386 113 -----SVRSLEIKGSATDSIKNVP------NGLTSLSINSYN---------PENQARIDNLI---SPSLKTLSLTGCSNI 169 (426)
T ss_pred -----ccceEEeCCCCCcccccCc------chHhheeccccc---------ccccccccccc---CCcccEEEecCCCcc
Confidence 477777754 34455666 577888875433 11000000000 368999999999844
Q ss_pred ceeeeeeccccccCCccccCcccCeEEeecCCCcce--eccCCCccccCCCcceeeeecCCccceeccCCcceEEeccC
Q 046345 1258 EEVLHLEELNVDEEHFGPLFPTLLDLKLIDLPRLKR--FCNFTENIIGLPELSNLTIENCPNIETFISNSTSILHMTAN 1334 (1462)
Q Consensus 1258 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~L~~L~i~~~ 1334 (1462)
. ++.. .+.+|+.|.++.+. ..+ +.....+ +++ .|.+.+|-++ ..+.+....|.++
T Consensus 170 ~-LP~~------------LP~SLk~L~ls~n~-~~sLeI~~~sLP----~nl-~L~f~n~lkL---~~~~f~d~~i~~~ 226 (426)
T PRK15386 170 I-LPEK------------LPESLQSITLHIEQ-KTTWNISFEGFP----DGL-DIDLQNSVLL---SPDVFKDKNITFQ 226 (426)
T ss_pred c-Cccc------------ccccCcEEEecccc-cccccCcccccc----ccc-Eechhhhccc---CHHHhhccccccc
Confidence 2 2211 56799999987753 221 2221222 456 7888777443 3444555555544
No 70
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.3e-07 Score=101.16 Aligned_cols=187 Identities=21% Similarity=0.125 Sum_probs=124.5
Q ss_pred CcEEEEccCCCCccCCc---cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcc--cCCCC
Q 046345 519 DPIAISLPHRDIEVLPE---RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSS--LGRLT 593 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~--i~~L~ 593 (1462)
..|.+++.+..+...+. ...|+++|.|++++|-...+ ..-..+...+++|+.|+|+.|.+...-++ -..+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw----~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW----FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH----HHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 36777777777665553 35689999999988753111 11234567899999999999987643322 24678
Q ss_pred cCcEEEecCcccCC---ccccccccCCcEEEecCCC-CCccchhhccccccCEEccCCcccccccC-cccccccccccee
Q 046345 594 SLQTLCLHWCELED---IAIVGQLKKLEILSFRDSD-IKELPLEIGLLTRLSLLDLSDCWSLEVIA-PNVISKLSRLEEL 668 (1462)
Q Consensus 594 ~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L 668 (1462)
+|+.|.|+.|.++. ......++.|+.|+|.+|+ +..--.....+..|+.|+|++|. +...+ -..++.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhh
Confidence 89999999999876 3455678889999999884 33222334567889999999974 44444 1126888888888
Q ss_pred eccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCc
Q 046345 669 YMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQ 712 (1462)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 712 (1462)
+++.+.+..... .+..........++|+.|++.-|.+...++
T Consensus 277 nls~tgi~si~~--~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 277 NLSSTGIASIAE--PDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred hccccCcchhcC--CCccchhhhcccccceeeecccCccccccc
Confidence 887775532211 122223334567788888888887755444
No 71
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.25 E-value=4.4e-05 Score=79.06 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=91.8
Q ss_pred cCCccccchhHHHHHHHHHHhc-----cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQD 227 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 227 (1462)
+.....|+|.++.++.+.-.+. +.....+.++|++|+||||||..+++... ..| .+.+...-....++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~--~~~---~~~sg~~i~k~~dl-- 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG--VNF---KITSGPAIEKAGDL-- 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH--
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC--CCe---EeccchhhhhHHHH--
Confidence 4456789999998888765543 23466889999999999999999999984 333 22322111111111
Q ss_pred HHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccc--c-------ccc-----cCCCCccccccccCCCCC
Q 046345 228 KLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKL--E-------LDV-----VGIPYGDVEKERKDDESG 293 (1462)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~-------~~~-----~~~~~~~l~~~~~~~~~g 293 (1462)
..+...+ .++-+|.+|++.... + .+. +...-+.-......-.+-
T Consensus 93 --------------------~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 93 --------------------AAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp --------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred --------------------HHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 1122222 234466667765320 0 000 000000000000001123
Q ss_pred cEEEEEecchhhhhhccCCCc-eEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHH
Q 046345 294 CTIILTSRNRDLLEKDMKSQK-NFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 294 s~IlvTtr~~~v~~~~~~~~~-~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
+-|=.|||...+......... ..+++..+.+|-.++..+.+.- -..+-.++.+.+|++++.|-|.-+.-+-
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~-l~i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI-LNIEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC-TT-EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH-hCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 345568887655432333333 4589999999999999877642 1222346789999999999997554433
No 72
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=3.1e-05 Score=89.13 Aligned_cols=199 Identities=14% Similarity=0.138 Sum_probs=116.8
Q ss_pred cCCccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccC--CCeEEEEEecCCCCHHHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKS--FDKVVMAEVTQTPDHQKIQDKL 229 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i 229 (1462)
+.....++|.++..+.+...+..++. +.+.++|+.|+||||+|..+++...-... +... ............+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 34456789999999999999988774 46889999999999999999998843111 1111 011111111233333
Q ss_pred HHHhC-------CCCCC------CcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccCC
Q 046345 230 AFDLG-------MEFGL------NENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDD 290 (1462)
Q Consensus 230 ~~~l~-------~~~~~------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~ 290 (1462)
...-. .+.+. ..-..+.++.+.+.+. .+++.++|+|+++.... .+.+...+. ..
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE-------Ep 168 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE-------EP 168 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh-------cC
Confidence 32211 01000 0011234445555443 36777999999976521 222211111 13
Q ss_pred CCCcEEEEEecch-hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 291 ESGCTIILTSRNR-DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 291 ~~gs~IlvTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
..+..+|++|+.. .+..........+++.+++.++..+.+.+.... .. -..+.+..|++.++|.|.....+
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3345555555544 333333344569999999999999999874321 11 23556788999999999865543
No 73
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=6.3e-05 Score=86.83 Aligned_cols=200 Identities=17% Similarity=0.208 Sum_probs=128.5
Q ss_pred cchhHHHHHHHHHHhc----cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 159 FDSRMKVFQDVVEAAK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 159 ~~gr~~~~~~l~~~l~----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
+.+|+.+++++...+. .+...-+.|+|..|+|||+.++.+.+.......-..+++|++....+..+++..|+..++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7799999999988776 334445899999999999999999999964432222799999999999999999999997
Q ss_pred CCCCCCcChHHHHHHHHHHHHc-cCcEEEEEcCCcccccccccCCCCccccccccCCCC-CcEE--EEEecchhhhhh--
Q 046345 235 MEFGLNENTFQKAYRLCERLKK-EKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDES-GCTI--ILTSRNRDLLEK-- 308 (1462)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~-gs~I--lvTtr~~~v~~~-- 308 (1462)
.......+..+....+.+.+.. ++.+++|||+++...+-.. . -+...++.... .++| |.++.+-.....
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--~---~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--E---VLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--h---HHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 5444456666777777777743 7889999999986533221 0 00011111112 3433 334443332210
Q ss_pred ----ccCCCceEEccCCCHHHHHHHHHHHhCC----CCCCCCchHHHHHHHHHcc-CCchHHHH
Q 046345 309 ----DMKSQKNFLIEVLSKDEALQLFECIVGD----SAKTSAIQPIADEIVERCE-GLPVALST 363 (1462)
Q Consensus 309 ----~~~~~~~~~l~~L~~~ea~~lf~~~~~~----~~~~~~~~~~~~~i~~~~~-glPlai~~ 363 (1462)
..-....+...+.+.+|-.+.+..++.. ....++.-+.+..++..-+ -.-.||.+
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 1112235889999999999999988731 2223333333444444444 44555544
No 74
>PF13173 AAA_14: AAA domain
Probab=98.23 E-value=1.6e-06 Score=85.02 Aligned_cols=120 Identities=27% Similarity=0.236 Sum_probs=77.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
+++.|.|+.|+||||+++.++++.. ....+++++..+....... ..+....+.+.. ..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPDLLEYFLELI-KPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhhhHHHHHHhh-ccC
Confidence 4899999999999999999999884 3345677776554221100 000111222222 247
Q ss_pred cEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhh-----ccCCCceEEccCCCHHHH
Q 046345 259 KVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEK-----DMKSQKNFLIEVLSKDEA 326 (1462)
Q Consensus 259 ~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~-----~~~~~~~~~l~~L~~~ea 326 (1462)
+.++++|++....+|......+.+ ..++.+|++|+........ ..+....+++.||+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d-------~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVD-------NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHH-------hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 789999999988877665333322 3356789999988766521 223445789999998773
No 75
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1e-06 Score=73.16 Aligned_cols=56 Identities=25% Similarity=0.412 Sum_probs=26.7
Q ss_pred cceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCC
Q 046345 571 GLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSD 626 (1462)
Q Consensus 571 ~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~ 626 (1462)
+|++|++++|.++.+|. .|..+++|++|++++|.++. +..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555554442 34445555555555444444 2344444455555554443
No 76
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=4.1e-05 Score=92.22 Aligned_cols=197 Identities=14% Similarity=0.179 Sum_probs=109.6
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|++..++.+..++..++. +.+.++|+.|+||||+|+.+++...-.. |.... ....-...+.+....
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTNQ 86 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcCC
Confidence 346678999999999999877654 4688999999999999999999874211 11100 001111111111110
Q ss_pred CCCC---C-CCcChHHHHHHHHHHHH----ccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 234 GMEF---G-LNENTFQKAYRLCERLK----KEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 234 ~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
.... . ......+.++.+..... .+++-++|+|+++.. ..+..+ .+++......+.+|++|...
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaL-------LKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNAL-------LKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHH-------HHHHHhCCCcEEEEEECCCh
Confidence 0000 0 00011122222222221 145558999998754 222222 22222233455565555443
Q ss_pred -hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch-HHHHHHH
Q 046345 304 -DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV-ALSTIAN 366 (1462)
Q Consensus 304 -~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~ 366 (1462)
.+......+...+++.+++.++....+.+.+.... ..-..+.+..+++.++|-+. |+..+-.
T Consensus 160 ~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg-i~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK-IKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33222334456899999999999999888774221 11235668889999999664 4444443
No 77
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.1e-06 Score=73.04 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=55.0
Q ss_pred CcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEEecCccc
Q 046345 540 PRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLHWCEL 605 (1462)
Q Consensus 540 ~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l 605 (1462)
|+|++|++.+|. +..+|...|.++++|++|++++|.++.+| ..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~------l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK------LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST------ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC------CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999886 78999999999999999999999999986 5899999999999999975
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.21 E-value=2.2e-05 Score=91.55 Aligned_cols=182 Identities=13% Similarity=0.150 Sum_probs=107.5
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEe--cCCCCHHHHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEV--TQTPDHQKIQDKLAFD 232 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~ 232 (1462)
....++|+++.++.+..++..+..+.+.++|+.|+||||+|+.+++..... .+.. .++.+ +.......+...+ ..
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~-~~i~~~~~~~~~~~~~~~~i-~~ 91 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRE-NFLELNASDERGIDVIRNKI-KE 91 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-cccc-ceEEeccccccchHHHHHHH-HH
Confidence 345678999999999999988777778999999999999999999987422 2211 12222 2211111111111 11
Q ss_pred hCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEecchh-hhhhc
Q 046345 233 LGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSRNRD-LLEKD 309 (1462)
Q Consensus 233 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~-v~~~~ 309 (1462)
+....+ .....+-++++|+++.... ...+. +++......+++|+++.... .....
T Consensus 92 ~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~-------~~le~~~~~~~lIl~~~~~~~l~~~l 149 (319)
T PRK00440 92 FARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALR-------RTMEMYSQNTRFILSCNYSSKIIDPI 149 (319)
T ss_pred HHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHH-------HHHhcCCCCCeEEEEeCCccccchhH
Confidence 100000 0013456999999865421 12221 11111334566777765432 21112
Q ss_pred cCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHH
Q 046345 310 MKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 310 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 362 (1462)
......+++.+++.++....+...+.... ..-..+.+..+++.++|.+.-+.
T Consensus 150 ~sr~~~~~~~~l~~~ei~~~l~~~~~~~~-~~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 150 QSRCAVFRFSPLKKEAVAERLRYIAENEG-IEITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HHHhheeeeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 22345789999999999999888774222 12235678889999999876543
No 79
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.21 E-value=8.6e-06 Score=89.51 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCC
Q 046345 161 SRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLN 240 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 240 (1462)
+.+..++.+..++.....+.+.|+|+.|+|||++|+.+++.... .....+++++..-.+ ..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHH------hH-----------
Confidence 35667778887766556668999999999999999999998742 233455665433211 00
Q ss_pred cChHHHHHHHHHHHHccCcEEEEEcCCcccc---ccc-ccCCCCccccccccCCCCCcEEEEEecchhhh--------hh
Q 046345 241 ENTFQKAYRLCERLKKEKKVLIILDNIWTKL---ELD-VVGIPYGDVEKERKDDESGCTIILTSRNRDLL--------EK 308 (1462)
Q Consensus 241 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~--------~~ 308 (1462)
..+...+ .+.-+||+||++... .|. .+...+.. . ...+..+|+||+..... ..
T Consensus 82 -------~~~~~~~--~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~----~--~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 82 -------PEVLEGL--EQADLVCLDDVEAIAGQPEWQEALFHLYNR----V--REAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred -------HHHHhhc--ccCCEEEEeChhhhcCChHHHHHHHHHHHH----H--HHcCCeEEEECCCChHHCCcccHHHHH
Confidence 1111222 223489999997653 221 12111111 0 12344788888753211 11
Q ss_pred ccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHH
Q 046345 309 DMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 309 ~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
.......+++.+++.++...++...+... ..+-.++..+.|++.++|.|..+..+.
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~-~~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARR-GLQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 22224679999999999999988765211 122335667888888888887766554
No 80
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.21 E-value=4.9e-06 Score=82.46 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=81.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhcc---CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDK---SFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL 254 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 254 (1462)
.+++.|+|.+|+|||++++.+.+...... .-..++|+.+....+...+...|+.+++..........+....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 35899999999999999999999884211 134578999988889999999999999988774455666677778888
Q ss_pred HccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecc
Q 046345 255 KKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRN 302 (1462)
Q Consensus 255 ~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~ 302 (1462)
.+.+..+||+||++.....+.+ ..+..+ .+..+.+||++.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l-~~l~~l-----~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFL-EFLRSL-----LNESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHH-HHHHHH-----TCSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHH-HHHHHH-----HhCCCCeEEEEECh
Confidence 6666679999999774111111 001111 13567778877765
No 81
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=2.7e-05 Score=90.87 Aligned_cols=172 Identities=9% Similarity=0.048 Sum_probs=106.4
Q ss_pred cccchhHHHHHHHHHHhccCC----------ceEEEEEecCCCcHHHHHHHHHHHHhhcc-------------------C
Q 046345 157 EAFDSRMKVFQDVVEAAKDDK----------LNIIGVYGMGGVGKTTLVKQVAKQVMEDK-------------------S 207 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~----------~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~ 207 (1462)
..++|.+..++.+..++..+. .+.+.++|+.|+|||++|+.++....-.. |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457899999999999988653 56788999999999999999998763211 1
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCc
Q 046345 208 FDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYG 281 (1462)
Q Consensus 208 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~ 281 (1462)
.|. .++.... .....+.++.+.+... .+++-++|+|+++.... ...+..
T Consensus 85 pD~-~~i~~~~---------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk--- 139 (394)
T PRK07940 85 PDV-RVVAPEG---------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLK--- 139 (394)
T ss_pred CCE-EEecccc---------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHH---
Confidence 121 1111110 0011222333333331 25566899999976522 222211
Q ss_pred cccccccCCCCCcEEEEEecchhh-hhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchH
Q 046345 282 DVEKERKDDESGCTIILTSRNRDL-LEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVA 360 (1462)
Q Consensus 282 ~l~~~~~~~~~gs~IlvTtr~~~v-~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 360 (1462)
.+.....+..+|++|.+... ..........+.+.+++.++..+.+.+..+ ...+.+..+++.++|.|..
T Consensus 140 ----~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 140 ----AVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VDPETARRAARASQGHIGR 209 (394)
T ss_pred ----HhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHH
Confidence 11114456666766666433 333344556899999999999988875432 1245678899999999975
Q ss_pred HHH
Q 046345 361 LST 363 (1462)
Q Consensus 361 i~~ 363 (1462)
...
T Consensus 210 A~~ 212 (394)
T PRK07940 210 ARR 212 (394)
T ss_pred HHH
Confidence 443
No 82
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.5e-05 Score=92.69 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=111.5
Q ss_pred CccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhc-------------------cCCCeEEEE
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMED-------------------KSFDKVVMA 214 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~-------------------~~f~~~~wv 214 (1462)
....++|.+..++.+...+..++.+ .+.++|+.|+||||+|+.++....-. ..+.-++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3466789999999998888877765 78999999999999999999865211 011123344
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCc
Q 046345 215 EVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGC 294 (1462)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs 294 (1462)
+.+....+.++- ++.+..... -..++.-++|+|++.....- .+..+.+++....+.+
T Consensus 91 daas~~~vddIR-~Iie~~~~~-----------------P~~~~~KVvIIDEah~Ls~~-----A~NaLLK~LEePp~~v 147 (491)
T PRK14964 91 DAASNTSVDDIK-VILENSCYL-----------------PISSKFKVYIIDEVHMLSNS-----AFNALLKTLEEPAPHV 147 (491)
T ss_pred ecccCCCHHHHH-HHHHHHHhc-----------------cccCCceEEEEeChHhCCHH-----HHHHHHHHHhCCCCCe
Confidence 443333332221 121111000 01256679999999654220 1112223333344566
Q ss_pred EEEEEecc-hhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 295 TIILTSRN-RDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 295 ~IlvTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
++|++|.. ..+..........+++.+++.++..+.+.+.+.... ..-.++.+..|++.++|.+..+
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg-i~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN-IEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 67766644 333333344556899999999999999988875322 2233566788999999977543
No 83
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.20 E-value=2.6e-05 Score=82.50 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=94.2
Q ss_pred HHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhc--------------------cCCCeEEEEEecCCCCHHHHH
Q 046345 168 DVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMED--------------------KSFDKVVMAEVTQTPDHQKIQ 226 (1462)
Q Consensus 168 ~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~~~ 226 (1462)
.+...+..++. +.+.++|+.|+||||+|+.+....... .+.|. .++.....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~------- 74 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQ------- 74 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccC-------
Confidence 34555556655 578999999999999999999987532 11122 22221111
Q ss_pred HHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEe
Q 046345 227 DKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTS 300 (1462)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTt 300 (1462)
....+.+..+.+.+. .+.+-++|+||++... ..+.+. +++......+.+|++|
T Consensus 75 --------------~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll-------~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 75 --------------SIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALL-------KTLEEPPPNTLFILIT 133 (188)
T ss_pred --------------cCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHH-------HHhcCCCCCeEEEEEE
Confidence 011122222222221 2567799999986642 223222 2222244456677777
Q ss_pred cchhhh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchH
Q 046345 301 RNRDLL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVA 360 (1462)
Q Consensus 301 r~~~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 360 (1462)
++.... .........+++.+++.++..+.+.+. | -..+.+..|++.++|.|..
T Consensus 134 ~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 134 PSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred CChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C------CCHHHHHHHHHHcCCCccc
Confidence 654222 222334568999999999998888776 2 1256789999999998864
No 84
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=4.5e-05 Score=88.28 Aligned_cols=198 Identities=12% Similarity=0.093 Sum_probs=114.5
Q ss_pred CCccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEE----EEEecCCCCHHHHHHH
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVV----MAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~----wv~~~~~~~~~~~~~~ 228 (1462)
.....++|.++..+.+...+..++.+ .+.++|+.|+||+|+|..+++...-........ -.++.. ...-...+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~~ 94 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVARR 94 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHHH
Confidence 34467889999999999999887654 688999999999999999999884222110000 000000 000011111
Q ss_pred HHHHhC-------CCCCC------CcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccC
Q 046345 229 LAFDLG-------MEFGL------NENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKD 289 (1462)
Q Consensus 229 i~~~l~-------~~~~~------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~ 289 (1462)
|...-. ..... ..-..+.++.+.+.+. .+++.++|+|+++.... ...+. +.+..
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLL-------K~LEe 167 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALL-------KVLEE 167 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHH-------HHHhc
Confidence 211100 00000 0012334445544442 26777999999875422 22221 11222
Q ss_pred CCCCcEEEEEecchhhh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 290 DESGCTIILTSRNRDLL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 290 ~~~gs~IlvTtr~~~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
...++.+|++|++.... .........+.+.+++.++..+.+.+..+.. ..+....+++.++|.|+.+..+
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 34566777777766433 2334456689999999999999998765321 1222367899999999865443
No 85
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.18 E-value=3.8e-05 Score=83.57 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhc---cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCC----eEEEEEecCCCCHHHHHHHHHHHhCC
Q 046345 163 MKVFQDVVEAAK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFD----KVVMAEVTQTPDHQKIQDKLAFDLGM 235 (1462)
Q Consensus 163 ~~~~~~l~~~l~---~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~ 235 (1462)
.+.++.+.+.+. ..+.+.+.|||.+|.|||++++.+...+.....-+ .++.|.....++..+++..|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 345555555555 34567899999999999999999999885432222 47888888999999999999999999
Q ss_pred CCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccccc-CCCCccccccccCCCCCcEEEEEecchhhhh----hcc
Q 046345 236 EFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVV-GIPYGDVEKERKDDESGCTIILTSRNRDLLE----KDM 310 (1462)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~-~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~----~~~ 310 (1462)
+........+....+...++.-+.-+||+|++.+....... ...+-++++++-..-.=+-|.|-|+....+- ...
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 88755555555555556665567789999999775221100 0001111122211223344666666543331 011
Q ss_pred CCCceEEccCCCHHH-HHHHHHHHhC----CCCCCCCchHHHHHHHHHccCCchHH
Q 046345 311 KSQKNFLIEVLSKDE-ALQLFECIVG----DSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 311 ~~~~~~~l~~L~~~e-a~~lf~~~~~----~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
.....+.+.....++ ...|+...-. .....-...++++.|...++|+.--+
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 234566777666544 4444433321 12222345789999999999986443
No 86
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=1.5e-05 Score=97.42 Aligned_cols=195 Identities=12% Similarity=0.155 Sum_probs=112.5
Q ss_pred CccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|.+..++.+...+..++.. .+.++|+.|+||||+|+.+++...-...+.. .....-.....|...-
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQGR 86 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHcCC
Confidence 3467889999999999999887754 4689999999999999999988742111000 0000111111221100
Q ss_pred CCCC---C-CCcChHHHHHHHHHHH----HccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 234 GMEF---G-LNENTFQKAYRLCERL----KKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 234 ~~~~---~-~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
.... + ......+.++.+.+.+ ..+++-++|+|+++... ..+.+. +.+.......++|++|.+.
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALL-------KtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL-------KTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHH-------HHHHcCCCCeEEEEecCCc
Confidence 0000 0 0001122233333332 13677799999997652 222221 1111133455666655554
Q ss_pred h-hhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 304 D-LLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 304 ~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
. +......+...+++.+++.++....+.+.+.... .....+....|++.++|.+..+..+
T Consensus 160 ~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 160 QKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred cccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 3323344467899999999999999988763221 2233566788999999987644433
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.16 E-value=0.00012 Score=86.90 Aligned_cols=179 Identities=13% Similarity=0.203 Sum_probs=109.7
Q ss_pred ccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhcc--------------------CCCeEEEE
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDK--------------------SFDKVVMA 214 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~--------------------~f~~~~wv 214 (1462)
...++|.++.++.+..++.+++. +.+.++|+.|+||||+|+.++....... +++. +++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 45678999999999999987764 4678999999999999999998874211 2222 222
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCcccccccc
Q 046345 215 EVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERK 288 (1462)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~ 288 (1462)
+...... .+....+.+.+. .+++-++|+|+++... ....+ .+++.
T Consensus 92 ~~~~~~~----------------------~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~L-------l~~le 142 (355)
T TIGR02397 92 DAASNNG----------------------VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNAL-------LKTLE 142 (355)
T ss_pred eccccCC----------------------HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHH-------HHHHh
Confidence 2211111 111122222221 2456699999986542 22222 22222
Q ss_pred CCCCCcEEEEEecchhh-hhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHH
Q 046345 289 DDESGCTIILTSRNRDL-LEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 289 ~~~~gs~IlvTtr~~~v-~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
.....+.+|++|.+... ..........+++.+++.++..+.+..++.... ..-..+.+..+++.++|.|..+....
T Consensus 143 ~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 143 EPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEG-IKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 23445666777755542 222233446789999999999999988773221 12235778889999999987665443
No 88
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=4.5e-06 Score=94.99 Aligned_cols=72 Identities=21% Similarity=0.339 Sum_probs=59.7
Q ss_pred hccceEEEEecCCCcceeeeeeccccccCCccccCcccCeEEeecCCCcceeccCCCccccCCCcceeeeecCCccceec
Q 046345 1243 LNNLEVLEVRNCDSLEEVLHLEELNVDEEHFGPLFPTLLDLKLIDLPRLKRFCNFTENIIGLPELSNLTIENCPNIETFI 1322 (1462)
Q Consensus 1243 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 1322 (1462)
+++++.|+|++|. |++++. .+++|++|.+++|+++++++... . ++|+.|.+++|+.+..+|
T Consensus 51 ~~~l~~L~Is~c~-L~sLP~-------------LP~sLtsL~Lsnc~nLtsLP~~L-P----~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCD-IESLPV-------------LPNELTEITIENCNNLTTLPGSI-P----EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCC-CcccCC-------------CCCCCcEEEccCCCCcccCCchh-h----hhhhheEccCcccccccc
Confidence 7899999999995 887762 57789999999999998887532 2 589999999999998887
Q ss_pred cCCcceEEeccC
Q 046345 1323 SNSTSILHMTAN 1334 (1462)
Q Consensus 1323 ~~~L~~L~i~~~ 1334 (1462)
. +|+.|++..+
T Consensus 112 ~-sLe~L~L~~n 122 (426)
T PRK15386 112 E-SVRSLEIKGS 122 (426)
T ss_pred c-ccceEEeCCC
Confidence 5 6899998753
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.4e-05 Score=93.36 Aligned_cols=196 Identities=11% Similarity=0.136 Sum_probs=110.9
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCC--CeEEEEEecCCCCHHHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSF--DKVVMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~ 231 (1462)
....++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++...-.... ..... .....-.....|..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc
Confidence 346688999999999999987765 466899999999999999998877321100 00000 00011111111111
Q ss_pred HhCCC---CC-CCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEec
Q 046345 232 DLGME---FG-LNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSR 301 (1462)
Q Consensus 232 ~l~~~---~~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr 301 (1462)
.-... .+ ......+.++.+.+... .++.-++|+|+++... ..+.+. +++......+++|++|.
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLL-------KtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAML-------KTLEEPPEYLKFVLATT 162 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHH-------HhcccCCCCeEEEEEEC
Confidence 00000 00 00111222333333321 2455699999998652 233322 22222344566666554
Q ss_pred c-hhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHH
Q 046345 302 N-RDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 302 ~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 362 (1462)
+ ..+..........+++.+++.++..+.+.+.+.... ..-..+.+..|++.++|-+.-+.
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-VPAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 3 334333345567899999999999999988774322 22235677889999998775443
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3.1e-05 Score=93.75 Aligned_cols=177 Identities=15% Similarity=0.190 Sum_probs=108.5
Q ss_pred CccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccC-------------------CCeEEEE
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKS-------------------FDKVVMA 214 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~-------------------f~~~~wv 214 (1462)
....++|.+..++.+..++..++.+ .+.++|+.|+||||+|+.+++...-... +.-++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3466889999999999999877654 5789999999999999999998742211 1112333
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH----HccCcEEEEEcCCcccc--cccccCCCCcccccccc
Q 046345 215 EVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL----KKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERK 288 (1462)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~ 288 (1462)
+.+....+.+ ++.+.+.. ..++.-++|+|+++... ..+.+ .+++.
T Consensus 94 daas~~~v~~----------------------iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naL-------Lk~LE 144 (509)
T PRK14958 94 DAASRTKVED----------------------TRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNAL-------LKTLE 144 (509)
T ss_pred cccccCCHHH----------------------HHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHH-------HHHHh
Confidence 3222222222 22222222 13566799999997642 22222 22222
Q ss_pred CCCCCcEEEEEecch-hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 289 DDESGCTIILTSRNR-DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 289 ~~~~gs~IlvTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
.....+++|++|.+. .+..........+++.+++.++....+.+.+..... .-..+....|++.++|-+.-+
T Consensus 145 epp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 145 EPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred ccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHH
Confidence 244567677665543 333222334567899999999988877777642221 223456778899999977544
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=2.5e-05 Score=94.95 Aligned_cols=180 Identities=12% Similarity=0.191 Sum_probs=109.0
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCC-------------------CeEEEE
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSF-------------------DKVVMA 214 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f-------------------~~~~wv 214 (1462)
....++|++..++.|..++..++. +.+.++|+.|+||||+|+.+++...-.... ..++.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 346789999999999999987764 467999999999999999999976321110 011122
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH----HccCcEEEEEcCCcccccccccCCCCccccccccCC
Q 046345 215 EVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL----KKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDD 290 (1462)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~ 290 (1462)
+...... .+.++.+.... ..+++-++|+|++..... .. +..+++++...
T Consensus 94 daAs~~g----------------------Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-~A----~NALLKtLEEP 146 (709)
T PRK08691 94 DAASNTG----------------------IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-SA----FNAMLKTLEEP 146 (709)
T ss_pred eccccCC----------------------HHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-HH----HHHHHHHHHhC
Confidence 2111111 12222222221 125677999999965422 00 11122222223
Q ss_pred CCCcEEEEEecchh-hhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHH
Q 046345 291 ESGCTIILTSRNRD-LLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 291 ~~gs~IlvTtr~~~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 362 (1462)
...+++|++|.+.. +..........+++.+++.++....+.+.+.... ..-..+.+..|++.++|.+.-+.
T Consensus 147 p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-IAYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHHH
Confidence 34566777665443 2222233445788889999999999988774222 22335678899999999875443
No 92
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=9.3e-07 Score=97.70 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=48.2
Q ss_pred hcCCcceEEEecCCCCCCCCc--ccCCCCcCcEEEecCcccCC----ccccccccCCcEEEecCCCCCccchh--hcccc
Q 046345 567 EGTEGLKVLDFTGIHFSSLPS--SLGRLTSLQTLCLHWCELED----IAIVGQLKKLEILSFRDSDIKELPLE--IGLLT 638 (1462)
Q Consensus 567 ~~l~~Lr~L~Ls~~~i~~lp~--~i~~L~~Lr~L~L~~~~l~~----~~~i~~L~~L~~L~L~~~~i~~lp~~--i~~L~ 638 (1462)
+++++||...|.++.+...+. ....|+++|.|||++|-+.. ......|++|+.|+++.|.+.....+ ...+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456677777777777766553 45667777777777776555 24445566666666666655432211 11344
Q ss_pred ccCEEccCCc
Q 046345 639 RLSLLDLSDC 648 (1462)
Q Consensus 639 ~L~~L~L~~~ 648 (1462)
+|+.|.++.|
T Consensus 198 ~lK~L~l~~C 207 (505)
T KOG3207|consen 198 HLKQLVLNSC 207 (505)
T ss_pred hhheEEeccC
Confidence 5555555554
No 93
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00011 Score=89.15 Aligned_cols=198 Identities=16% Similarity=0.184 Sum_probs=111.7
Q ss_pred ccccchhHHHHHHHHHHhccCC-ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~-~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
...++|.+..++.|..++..++ .+.+.++|+.|+||||+|+.+++...-....+. ...+.-...+.|.....
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 4567899999899998888766 467889999999999999999998842111100 00000011111111000
Q ss_pred CCC---C-CCcChHHHHHHHHHHH----HccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecch-
Q 046345 235 MEF---G-LNENTFQKAYRLCERL----KKEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNR- 303 (1462)
Q Consensus 235 ~~~---~-~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~- 303 (1462)
... . ......+.++.+.+.+ ..+++.++|+|++... ...+.+. +++........+|++|.+.
T Consensus 88 pDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLL-------k~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALL-------KTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred CceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHH-------HHhhccCCCEEEEEecCChh
Confidence 000 0 0001112222222222 1356779999999765 2223322 2221133455566666553
Q ss_pred hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc-hHHHHHHHHH
Q 046345 304 DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP-VALSTIANAL 368 (1462)
Q Consensus 304 ~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l 368 (1462)
.+..........+++.+++.++....+.+.+.... ..-..+.+..|++..+|-+ .|+..+...+
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33322233446889999999999988888664221 2233567888999999954 6777666544
No 94
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.08 E-value=2.3e-05 Score=79.77 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=73.6
Q ss_pred chhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC
Q 046345 160 DSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL 239 (1462)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 239 (1462)
+|++..++.+...+.....+.+.|+|++|+|||++|+.+++.... .-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 378889999999888755668999999999999999999999852 22346677665443322211111100
Q ss_pred CcChHHHHHHHHHHHHccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 240 NENTFQKAYRLCERLKKEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 240 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
............++.++|+||++.. .....+...+....... ....+.+||+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-IDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-ccCCCeEEEEecCccc
Confidence 0001111111357789999999853 11111111111100000 0135778888888653
No 95
>PLN03150 hypothetical protein; Provisional
Probab=98.08 E-value=5.5e-06 Score=104.13 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=74.4
Q ss_pred cceEEEecCCCCC-CCCcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCC-ccchhhccccccCEEccC
Q 046345 571 GLKVLDFTGIHFS-SLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIK-ELPLEIGLLTRLSLLDLS 646 (1462)
Q Consensus 571 ~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~ 646 (1462)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+.. |..++.+.+|++|+|++|+++ .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888876 567788888888888888888764 667888888888888888877 677788888888888888
Q ss_pred CcccccccCcccccc-ccccceeeccCcc
Q 046345 647 DCWSLEVIAPNVISK-LSRLEELYMGGSF 674 (1462)
Q Consensus 647 ~~~~l~~~p~~~l~~-L~~L~~L~l~~~~ 674 (1462)
+|.-...+|.. ++. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 87433355554 443 3455566665553
No 96
>PLN03150 hypothetical protein; Provisional
Probab=98.07 E-value=6.9e-06 Score=103.25 Aligned_cols=107 Identities=22% Similarity=0.321 Sum_probs=90.5
Q ss_pred cceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCC-CCCcccCCCCcCcEEEecCcccCC--ccccccccCC
Q 046345 541 RLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFS-SLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKKL 617 (1462)
Q Consensus 541 ~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L 617 (1462)
.++.|++.++.. ...+|.. |..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+.. |..+++|++|
T Consensus 419 ~v~~L~L~~n~L-----~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGL-----RGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCc-----cccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 477888887763 3456655 789999999999999997 789999999999999999999986 7899999999
Q ss_pred cEEEecCCCCC-ccchhhccc-cccCEEccCCcccccc
Q 046345 618 EILSFRDSDIK-ELPLEIGLL-TRLSLLDLSDCWSLEV 653 (1462)
Q Consensus 618 ~~L~L~~~~i~-~lp~~i~~L-~~L~~L~L~~~~~l~~ 653 (1462)
++|+|++|+++ .+|..++.+ .++..+++.+|..+..
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 99999999988 889888764 5778888888754443
No 97
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.06 E-value=7.8e-06 Score=88.85 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=62.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCcChHHH------HHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT--PDHQKIQDKLAFDLGMEFGLNENTFQK------AYRL 250 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~------~~~l 250 (1462)
..++|+|++|+|||||++.+++..... +|+.+.|+.+... .++.++++.+...+-.... +.....+ ....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~-~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF-DEPPERHVQVAEMVLEK 94 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecC-CCCHHHHHHHHHHHHHH
Confidence 489999999999999999999998644 8999999997665 7899999998332211111 1111111 1111
Q ss_pred HHH-HHccCcEEEEEcCCccc
Q 046345 251 CER-LKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 251 ~~~-l~~~k~~LlVlDdv~~~ 270 (1462)
.+. ...+++.++++|++...
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 222 23489999999999754
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=4.5e-05 Score=93.13 Aligned_cols=179 Identities=15% Similarity=0.218 Sum_probs=108.6
Q ss_pred ccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccC-------------------CCeEEEEE
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKS-------------------FDKVVMAE 215 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~-------------------f~~~~wv~ 215 (1462)
...++|.+..++.+..++..++.+ .+.++|+.|+||||+|+.+++...-... |.-+++++
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 456789999999999999877654 5689999999999999999988732111 11122222
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccC
Q 046345 216 VTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKD 289 (1462)
Q Consensus 216 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~ 289 (1462)
.+... ..+.++.+..... .+++.++|+|+++.... .+. +++++..
T Consensus 95 ~~~~~----------------------~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~na-------LLK~LEe 145 (527)
T PRK14969 95 AASNT----------------------QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNA-------MLKTLEE 145 (527)
T ss_pred ccccC----------------------CHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHH-------HHHHHhC
Confidence 21111 1122222222221 25677999999975432 222 2222222
Q ss_pred CCCCcEEEEEecchh-hhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch-HHHHH
Q 046345 290 DESGCTIILTSRNRD-LLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV-ALSTI 364 (1462)
Q Consensus 290 ~~~gs~IlvTtr~~~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 364 (1462)
....+.+|++|.+.. +..........+++.+++.++....+.+.+.... ....++.+..|++.++|.+. |+..+
T Consensus 146 pp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 146 PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344566666665443 2212223345889999999999988887764222 22335667889999999775 44433
No 99
>PF14516 AAA_35: AAA-like domain
Probab=98.03 E-value=0.00054 Score=79.11 Aligned_cols=208 Identities=13% Similarity=0.132 Sum_probs=122.4
Q ss_pred CccccchhHHHHHHHHHHhcc-CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-----CCHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-----PDHQKIQDK 228 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~-~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~ 228 (1462)
+...++.|...-+.+.+.+.+ +. .+.|.|+-.+|||+|..++.+..... . ..++++++... .+...+++.
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G~--~~~I~apRq~GKTSll~~l~~~l~~~-~-~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPGS--YIRIKAPRQMGKTSLLLRLLERLQQQ-G-YRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCCC--EEEEECcccCCHHHHHHHHHHHHHHC-C-CEEEEEEeecCCCcccCCHHHHHHH
Confidence 345667898777888888776 66 89999999999999999999988643 3 34567887652 245555554
Q ss_pred HH----HHhCCCCCCCc------ChHHHHHHHH-HHHH--ccCcEEEEEcCCccccccc----ccCCCCccccccccCCC
Q 046345 229 LA----FDLGMEFGLNE------NTFQKAYRLC-ERLK--KEKKVLIILDNIWTKLELD----VVGIPYGDVEKERKDDE 291 (1462)
Q Consensus 229 i~----~~l~~~~~~~~------~~~~~~~~l~-~~l~--~~k~~LlVlDdv~~~~~~~----~~~~~~~~l~~~~~~~~ 291 (1462)
++ ++++......+ .........+ +.+. .+++.+|++|+|+...+.. .+...+...........
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 44 44544321100 0111112222 2222 2789999999997653211 11111111000000000
Q ss_pred -CCcEEEEEecchhhh------hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 292 -SGCTIILTSRNRDLL------EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 292 -~gs~IlvTtr~~~v~------~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
-..-.+|..+..... .........++|.+++.+|...|..++-.. -..+..++|...+||+|.-+..+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHHH
Confidence 011122222211111 111223457999999999999998876432 12334899999999999999999
Q ss_pred HHHHhcC
Q 046345 365 ANALKSK 371 (1462)
Q Consensus 365 ~~~l~~~ 371 (1462)
+..+...
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9999765
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=4.2e-05 Score=90.74 Aligned_cols=199 Identities=14% Similarity=0.158 Sum_probs=110.9
Q ss_pred ccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEE-ecCCCCHHHHHHHHHHHh
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAE-VTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 233 (1462)
...++|.+...+.+..++.+++++ .+.++|+.|+||||+|+.+++...-....+...|.. .......-.....+....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 456789999999999999887765 488999999999999999999884221111111110 000000001111111110
Q ss_pred CCCC----CCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEec-c
Q 046345 234 GMEF----GLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSR-N 302 (1462)
Q Consensus 234 ~~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr-~ 302 (1462)
.... .......+.+..+.+.+. .+++-++|+||+.... .++.+. +++....+.+.+|++|. .
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LL-------k~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFL-------KTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHH-------HHHhcCCCCeEEEEEeCCh
Confidence 0000 001111233333444431 2566799999987542 333332 22222444666665553 3
Q ss_pred hhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHH
Q 046345 303 RDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 303 ~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 362 (1462)
..+..........+++.+++.++..+.+...+... ...-..+.+..|++.++|.+.-+.
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~-g~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE-GISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 33332222334578999999999988888776321 122335778899999999775443
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=7.6e-05 Score=91.68 Aligned_cols=198 Identities=11% Similarity=0.124 Sum_probs=113.5
Q ss_pred CCccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCC--eEEEEEecCCCCHHHHHHHHH
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFD--KVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
.....++|++..++.+..++..++.. .+.++|+.|+||||+|+.+++...-..... ...+-... .-.-...|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHHHHh
Confidence 34567899999999999999877654 688999999999999999999874211100 00000000 001111122
Q ss_pred HHhCCCCC----CCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEe
Q 046345 231 FDLGMEFG----LNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTS 300 (1462)
Q Consensus 231 ~~l~~~~~----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTt 300 (1462)
........ ......+.++.+..... .+++-++|+|++..... .+.+ ++++.....++++|++|
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naL-------LKtLEePp~~~~fIl~t 169 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNAL-------LKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHH-------HHHHHhCCCCeEEEEEe
Confidence 11110000 00111223333333331 25667899999865422 2222 22222244566676655
Q ss_pred c-chhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 301 R-NRDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 301 r-~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
. ...+..........+++..++.++....+.+.+.... ..-..+.+..|++.++|.+.-+..
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-i~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-VEVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4 3333322333456899999999999999988774221 122346788899999998865544
No 102
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.99 E-value=5e-05 Score=80.83 Aligned_cols=189 Identities=17% Similarity=0.162 Sum_probs=118.6
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeE-EEEEecCCCCHHHHHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKV-VMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~-~wv~~~~~~~~~~~~~~i~~ 231 (1462)
++....+.|.+..+..+...+.....+....+|++|.|||+-|++++...-..+.|... .=.+++......-+-..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K--- 108 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK--- 108 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh---
Confidence 44556788999999999999988788899999999999999999999988654555443 22233322211100000
Q ss_pred HhCCCCCCCcChHHHHHHHHHHHH-----ccCc-EEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 232 DLGMEFGLNENTFQKAYRLCERLK-----KEKK-VLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~-----~~k~-~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
......+..... .-++ -++|||+++.. +.|.++...... ....++.|+.+.+.
T Consensus 109 ------------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-------~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 109 ------------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-------FSRTTRFILICNYL 169 (346)
T ss_pred ------------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-------cccceEEEEEcCCh
Confidence 000111111110 1223 48999999875 566665433332 45567777666665
Q ss_pred hhh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC-chHHHHH
Q 046345 304 DLL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL-PVALSTI 364 (1462)
Q Consensus 304 ~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~ 364 (1462)
... .....+...++.++|.+++...-++..+..+. .+-..+..+.|++.++|- --|+.++
T Consensus 170 srii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~-v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 170 SRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG-VDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 544 12233345789999999999999998885322 333456788899999883 4444433
No 103
>PRK09087 hypothetical protein; Validated
Probab=97.99 E-value=0.0001 Score=79.60 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=88.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
.+.+.|+|+.|+|||+|++.++.... +.+++.. .+.. .....+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~---------------------~~~~~~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGS---------------------DAANAAAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------Hcch---------------------HHHHhhhc-
Confidence 45789999999999999998887642 1233321 1111 11112211
Q ss_pred CcEEEEEcCCcccc-cccccCCCCccccccccCCCCCcEEEEEecchhh--------hhhccCCCceEEccCCCHHHHHH
Q 046345 258 KKVLIILDNIWTKL-ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDL--------LEKDMKSQKNFLIEVLSKDEALQ 328 (1462)
Q Consensus 258 k~~LlVlDdv~~~~-~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v--------~~~~~~~~~~~~l~~L~~~ea~~ 328 (1462)
-+|++||+.... +-+.+...+. .+ ...|..||+|++...- ..........+++++++.++-.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n----~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLIN----SV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHH----HH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 278889996531 1111111111 11 2346779998874322 11234556789999999999999
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHH
Q 046345 329 LFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 329 lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
++++.+... .-.-.+++..-|++++.|...++..+-
T Consensus 161 iL~~~~~~~-~~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 161 VIFKLFADR-QLYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 999988532 122336788899999998877766533
No 104
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.2e-07 Score=97.02 Aligned_cols=186 Identities=16% Similarity=0.140 Sum_probs=112.3
Q ss_pred cCCcEEEEecCCCccc-ccCcCcCCCCCccEEEEcccccceeeeccccccccCceeeeccccccccCcCccccccccCCc
Q 046345 1101 SKLKNLVIFRCNNLMN-IFPPLVGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIAFNELKFLELDKLPRLRSFCLENY 1179 (1462)
Q Consensus 1101 ~~L~~L~l~~c~~l~~-~~~~~l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 1179 (1462)
+.|+.|+++. ..++. .+-..+..|..|+.|.|.|..-=..+..... .-.+|+.|+|+.|+.++.....-.
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA--------kN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA--------KNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh--------ccccceeeccccccccchhHHHHH
Confidence 5688888854 33332 1112267788888888887432222221111 136899999999999998877667
Q ss_pred cccCCCcceEeeecccCcccccCCcc--ccccceeEEeeeccccccccccccchhhhHHHHHHHhhccceEEEEecCCCc
Q 046345 1180 TLEFPSLERFSMKECRNMKTFSQGAL--FTPKLCKVQMIENEEDDLHHWEGNLNSTIQKHYEEMCLNNLEVLEVRNCDSL 1257 (1462)
Q Consensus 1180 ~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c~~l 1257 (1462)
+.+|..|.+|+++.|.-.+..-.... --++|+.|+++||..+ +...-...+... ||+|-+||+++|..+
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--------l~~sh~~tL~~r-cp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--------LQKSHLSTLVRR-CPNLVHLDLSDSVML 326 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--------hhhhHHHHHHHh-CCceeeecccccccc
Confidence 78899999999999866542211100 0168899999998722 211122333445 888888888888866
Q ss_pred ceeeeeeccccccCCccccCcccCeEEeecCCCcceeccCCCccccCCCcceeeeecC
Q 046345 1258 EEVLHLEELNVDEEHFGPLFPTLLDLKLIDLPRLKRFCNFTENIIGLPELSNLTIENC 1315 (1462)
Q Consensus 1258 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c 1315 (1462)
+.-...+. ..|+-|++|.++.|..+- |.-...+...|+|.+|++.+|
T Consensus 327 ~~~~~~~~---------~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 KNDCFQEF---------FKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CchHHHHH---------HhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 54211111 157788888888875431 111111223567777777766
No 105
>PRK08727 hypothetical protein; Validated
Probab=97.98 E-value=7.2e-05 Score=81.68 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=90.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
...+.|+|..|+|||.|++++++..... ...+.++++.+. ... .....+.+ .
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~~------~~~------------------~~~~~~~l--~ 92 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQAA------AGR------------------LRDALEAL--E 92 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHHh------hhh------------------HHHHHHHH--h
Confidence 3479999999999999999999987533 235566654221 110 11122333 2
Q ss_pred CcEEEEEcCCccccc---ccccCCCCccccccccCCCCCcEEEEEecchhhh--------hhccCCCceEEccCCCHHHH
Q 046345 258 KKVLIILDNIWTKLE---LDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL--------EKDMKSQKNFLIEVLSKDEA 326 (1462)
Q Consensus 258 k~~LlVlDdv~~~~~---~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~--------~~~~~~~~~~~l~~L~~~ea 326 (1462)
+.-+||+||+..... |... .+ .+...+ ...|..||+|++..... .........+++++++.++-
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~--lf-~l~n~~--~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVA--LF-DFHNRA--RAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred cCCEEEEeCcccccCChHHHHH--HH-HHHHHH--HHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 445999999975422 2111 11 111111 22466799999854221 11223355899999999999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 327 LQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 327 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
.+++.+++... .-.-.++....|++.++|-..++
T Consensus 168 ~~iL~~~a~~~-~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 168 AAVLRERAQRR-GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCHHHH
Confidence 99999877432 12333567788888887655443
No 106
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.98 E-value=5.7e-05 Score=94.77 Aligned_cols=172 Identities=20% Similarity=0.278 Sum_probs=100.0
Q ss_pred CCccccchhHHHHH---HHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHH
Q 046345 154 KDYEAFDSRMKVFQ---DVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~---~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
.....|+|++..+. .+...+..++.+.+.++|++|+||||+|+.+++... ..|.. ++... ....+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~~---lna~~-~~i~d------ 92 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFSS---LNAVL-AGVKD------ 92 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Cccee---ehhhh-hhhHH------
Confidence 33466889888774 566667777777889999999999999999998763 33311 11100 00000
Q ss_pred HHhCCCCCCCcChHHHHHHHHHHHH-ccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEE--ecchh-
Q 046345 231 FDLGMEFGLNENTFQKAYRLCERLK-KEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILT--SRNRD- 304 (1462)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvT--tr~~~- 304 (1462)
..+........+. .+++.+||+||++.. ...+.+... -..|..++|+ |.+..
T Consensus 93 ------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~----------lE~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 93 ------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW----------VENGTITLIGATTENPYF 150 (725)
T ss_pred ------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH----------hcCceEEEEEecCCChHh
Confidence 0111111111121 246779999999753 233333211 2235545553 33332
Q ss_pred -hhhhccCCCceEEccCCCHHHHHHHHHHHhCC------CCCCCCchHHHHHHHHHccCCch
Q 046345 305 -LLEKDMKSQKNFLIEVLSKDEALQLFECIVGD------SAKTSAIQPIADEIVERCEGLPV 359 (1462)
Q Consensus 305 -v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~------~~~~~~~~~~~~~i~~~~~glPl 359 (1462)
+..........+++++++.++...++.+.+.+ .....-.++....|++.+.|...
T Consensus 151 ~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 151 EVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11112233568999999999999999887641 11122335677888888887643
No 107
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.0004 Score=86.66 Aligned_cols=195 Identities=14% Similarity=0.153 Sum_probs=111.5
Q ss_pred ccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
...++|.+..++.+..++..++. +.+.++|+.|+||||+|+.+++...-...... ....+.-...+.|....+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHhcCCC
Confidence 45688999999999988887664 45689999999999999999988742111000 001111122223322211
Q ss_pred CCC---CC-CcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 235 MEF---GL-NENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 235 ~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
... .. .....+.+..+.+.+. .+++-++|+|++.... ..+.+ ++++......+.+|+++.+..
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naL-------Lk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNAL-------LKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHH-------HHHHhcCCCCeEEEEEeCChh
Confidence 110 00 0111222233333221 2566799999986542 22222 222222344566666665432
Q ss_pred -hhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 305 -LLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 305 -v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
+..........+++..++.++....+.+.+..... .-..+.+..|++.++|.+..+...
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 32222334457899999999999888887743221 123567889999999988655443
No 108
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00016 Score=86.79 Aligned_cols=180 Identities=13% Similarity=0.200 Sum_probs=110.0
Q ss_pred CccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCC-------------------eEEEE
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFD-------------------KVVMA 214 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-------------------~~~wv 214 (1462)
....++|.+...+.+..++..++.+ ++.++|+.|+||||+|+.+++...-....+ .++.+
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 3466889999999999999877755 568999999999999999998873211100 12222
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCcccccccc
Q 046345 215 EVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERK 288 (1462)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~ 288 (1462)
+......+ +.++.+.+... .+++-++|+|++.... ..+++ ++++.
T Consensus 92 daas~~gI----------------------d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NAL-------LK~LE 142 (535)
T PRK08451 92 DAASNRGI----------------------DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNAL-------LKTLE 142 (535)
T ss_pred ccccccCH----------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHH-------HHHHh
Confidence 21111111 11222222110 1456799999996542 22222 22222
Q ss_pred CCCCCcEEEEEecchhhh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 289 DDESGCTIILTSRNRDLL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 289 ~~~~gs~IlvTtr~~~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
.....+++|++|.+..-. .....+...+++.+++.++....+.+.+.... ..-..+.++.|++.++|-+.-+...
T Consensus 143 Epp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 143 EPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-VSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 234567777777654222 22233456899999999999999887774222 2223577889999999988555443
No 109
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.95 E-value=4.9e-05 Score=87.02 Aligned_cols=249 Identities=13% Similarity=0.180 Sum_probs=128.9
Q ss_pred HHHHHHHhHhHHHHHhhccchhchhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 046345 11 SIVSEGSKTLFKPIIRQVSYLFKYQSYIDELKNQVRQLGYKREMVQQPVNQASLQRDEIYEGVTNWLNSVDEFSEGVAKS 90 (1462)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~~~~~~~~~~ed 90 (1462)
.++..++..++..-.++..|+.+++..+...+.+.. +.+++.|.++-++.+. .+|
T Consensus 280 Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~-----------------------~~q~K~~~kqqk~i~~--~K~ 334 (614)
T KOG0927|consen 280 DFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELE-----------------------ENQMKAYEKQQKQIAH--MKD 334 (614)
T ss_pred hhhhhHhhhhheecccceeeecCCHHHHhhHHHHHh-----------------------HHHHHHHHHHHhHHHH--hhH
Confidence 356667777777777777777777654333332222 3467778877666655 355
Q ss_pred HhhhHHHhhcccccCCCCChhhhhHhhHHHHHHHHHHHHHhhcCCCc------ccccCC---CCCCCCccccCCccc-cc
Q 046345 91 IIDDEDRAKKSCFKGLCPNLISRYKLSKQAATTAEAAANLVGEGNFS------NVSFRP---TPRSTGHIQVKDYEA-FD 160 (1462)
Q Consensus 91 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~-~~ 160 (1462)
++-.+... ..+.++++....+.++++.+++-.. ....+. .+.+++...+.+... +-
T Consensus 335 ~ia~~g~g--------------~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~ 400 (614)
T KOG0927|consen 335 LIARFGHG--------------SAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYS 400 (614)
T ss_pred HHHhhccc--------------chhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEEeccccCCC
Confidence 55444211 1123455555555555544332110 011111 111111222222221 11
Q ss_pred hhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc---------CCC-----------eEEEEE--ec-
Q 046345 161 SRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK---------SFD-----------KVVMAE--VT- 217 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---------~f~-----------~~~wv~--~~- 217 (1462)
+---....+...+.-+. .|++||++|+|||||.+.++.+..+.. .|. ...|.. +-
T Consensus 401 ~~~~iy~~l~fgid~~s--rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~ 478 (614)
T KOG0927|consen 401 DNPMIYKKLNFGIDLDS--RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMP 478 (614)
T ss_pred CcchhhhhhhcccCccc--ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHH
Confidence 11123334433332333 799999999999999999999885431 110 000000 00
Q ss_pred --CCCCHHHHHHHHHHHhCCCCCCCc------ChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccC
Q 046345 218 --QTPDHQKIQDKLAFDLGMEFGLNE------NTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKD 289 (1462)
Q Consensus 218 --~~~~~~~~~~~i~~~l~~~~~~~~------~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~ 289 (1462)
......+..+.|+.++|...+... ++-++.+.++.++.-..+.+||||++.+..|.+.+......+-
T Consensus 479 ~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiN----- 553 (614)
T KOG0927|consen 479 KFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN----- 553 (614)
T ss_pred hccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHh-----
Confidence 001344666777777777644221 2334444555555447889999999999988766532211111
Q ss_pred CCCCcEEEEEecchhhh
Q 046345 290 DESGCTIILTSRNRDLL 306 (1462)
Q Consensus 290 ~~~gs~IlvTtr~~~v~ 306 (1462)
.-+|. +|++|++.-+.
T Consensus 554 e~~Gg-vv~vSHDfrlI 569 (614)
T KOG0927|consen 554 EFPGG-VVLVSHDFRLI 569 (614)
T ss_pred ccCCc-eeeeechhhHH
Confidence 22455 77788876443
No 110
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.94 E-value=2.6e-05 Score=87.79 Aligned_cols=92 Identities=17% Similarity=0.172 Sum_probs=63.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCC--CHHHHHHHHHHHhCCCCCCCcChHHHH------H
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTP--DHQKIQDKLAFDLGMEFGLNENTFQKA------Y 248 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~------~ 248 (1462)
+-....|+|++|+||||||+.+++....+ +|+.++||.+.+.. ++.++++.+...+-.... +....... .
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHH
Confidence 33488999999999999999999999754 89999999998876 777888887632211111 12211111 1
Q ss_pred HHHHHH-HccCcEEEEEcCCccc
Q 046345 249 RLCERL-KKEKKVLIILDNIWTK 270 (1462)
Q Consensus 249 ~l~~~l-~~~k~~LlVlDdv~~~ 270 (1462)
...+++ ..+++++|++|++...
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHH
Confidence 122222 3589999999999653
No 111
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.94 E-value=9.1e-05 Score=81.00 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcC
Q 046345 163 MKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNEN 242 (1462)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 242 (1462)
...+..+..+......+.+.|+|+.|+|||+|++.+++..... -..+.++++.....
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---------------------
Confidence 3455555555545555689999999999999999999987532 23466666533100
Q ss_pred hHHHHHHHHHHHHccCcEEEEEcCCccc---cccccc-CCCCccccccccCCCCC-cEEEEEecchhhh--------hhc
Q 046345 243 TFQKAYRLCERLKKEKKVLIILDNIWTK---LELDVV-GIPYGDVEKERKDDESG-CTIILTSRNRDLL--------EKD 309 (1462)
Q Consensus 243 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~~-~~~~~~l~~~~~~~~~g-s~IlvTtr~~~v~--------~~~ 309 (1462)
....+.+.+. +.-+|++||+... .+|+.. ...+.. . ...| .++|+||+..... ..+
T Consensus 87 ---~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~----~--~e~g~~~li~ts~~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 87 ---FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNR----I--LESGRTRLLITGDRPPRQLNLGLPDLASR 155 (235)
T ss_pred ---hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHH----H--HHcCCCeEEEeCCCChHHcCcccHHHHHH
Confidence 0011122221 1238899999653 233221 111111 1 1123 4799999865222 123
Q ss_pred cCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 310 MKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 310 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
.....++++++++.++-.+++.+++... .-.-.+++..-|++++.|-..++..
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHHH
Confidence 4445789999999999999998866322 1233467888888888876655443
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00017 Score=85.51 Aligned_cols=175 Identities=13% Similarity=0.222 Sum_probs=103.1
Q ss_pred ccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhc------cCCCe-EEEEEecCCCCHHHHHH
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMED------KSFDK-VVMAEVTQTPDHQKIQD 227 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~------~~f~~-~~wv~~~~~~~~~~~~~ 227 (1462)
...++|.+...+.+..++.+++. +.+.++|+.|+||||+|+.+++..... ..|.. ++-++.....+.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 90 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV----- 90 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-----
Confidence 45678999999999999987765 478899999999999999998877421 11211 111111111111
Q ss_pred HHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEec
Q 046345 228 KLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSR 301 (1462)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr 301 (1462)
+.+..+.+... .+++-++|+||+..... ++.+. +++......+.+|++|.
T Consensus 91 -----------------~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll-------~~le~~~~~~~~Il~~~ 146 (367)
T PRK14970 91 -----------------DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFL-------KTLEEPPAHAIFILATT 146 (367)
T ss_pred -----------------HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHH-------HHHhCCCCceEEEEEeC
Confidence 11112222110 24566899999865422 22221 11111233455555553
Q ss_pred c-hhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchH
Q 046345 302 N-RDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVA 360 (1462)
Q Consensus 302 ~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 360 (1462)
. .............+++.+++.++....+.+.+.... -.-..+.+..+++.++|-+..
T Consensus 147 ~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g-~~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 147 EKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEG-IKFEDDALHIIAQKADGALRD 205 (367)
T ss_pred CcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHH
Confidence 3 333222233456899999999999988888764221 112357788899999986653
No 113
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.9e-07 Score=95.11 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=59.7
Q ss_pred ccceeEEeeeccccccccccccchhhhHHHHHHHhhccceEEEEecCCCcceeeeeeccccccCCccccCcccCeEEeec
Q 046345 1208 PKLCKVQMIENEEDDLHHWEGNLNSTIQKHYEEMCLNNLEVLEVRNCDSLEEVLHLEELNVDEEHFGPLFPTLLDLKLID 1287 (1462)
Q Consensus 1208 ~~L~~L~l~~c~~~~~~~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 1287 (1462)
.+|+.|+++.|. +++......++.+ |+.|.+|+++.|..-++..... ....-++|+.|++++
T Consensus 234 ~~L~~lnlsm~s---------G~t~n~~~ll~~s-cs~L~~LNlsWc~l~~~~Vtv~--------V~hise~l~~LNlsG 295 (419)
T KOG2120|consen 234 SNLVRLNLSMCS---------GFTENALQLLLSS-CSRLDELNLSWCFLFTEKVTVA--------VAHISETLTQLNLSG 295 (419)
T ss_pred ccceeecccccc---------ccchhHHHHHHHh-hhhHhhcCchHhhccchhhhHH--------Hhhhchhhhhhhhhh
Confidence 688888898888 7777777777777 8999999999998333322110 111356788888888
Q ss_pred CC-CcceeccCCCccccCCCcceeeeecCCccc
Q 046345 1288 LP-RLKRFCNFTENIIGLPELSNLTIENCPNIE 1319 (1462)
Q Consensus 1288 ~~-~l~~~~~~~~~~~~l~~L~~L~i~~c~~l~ 1319 (1462)
|. ++..-...... ..||+|.+||+++|..|+
T Consensus 296 ~rrnl~~sh~~tL~-~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 296 YRRNLQKSHLSTLV-RRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred hHhhhhhhHHHHHH-HhCCceeeeccccccccC
Confidence 73 22211111111 346777777777777666
No 114
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00018 Score=89.23 Aligned_cols=175 Identities=16% Similarity=0.206 Sum_probs=108.7
Q ss_pred ccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhh---------------------ccCCCeEEE
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVME---------------------DKSFDKVVM 213 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~---------------------~~~f~~~~w 213 (1462)
...++|.+...+.+..++..++.. .+.++|+.|+||||+|+.++....- ..+|+. ..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 456789999999999999887654 5789999999999999999997731 112332 22
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccc
Q 046345 214 AEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKER 287 (1462)
Q Consensus 214 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~ 287 (1462)
++......+. .+..+...+. .+++-++|+|++.... ..+.+. +++
T Consensus 95 ld~~~~~~vd----------------------~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLL-------K~L 145 (614)
T PRK14971 95 LDAASNNSVD----------------------DIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFL-------KTL 145 (614)
T ss_pred ecccccCCHH----------------------HHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHH-------HHH
Confidence 2222221121 2222222111 2566799999987652 233332 222
Q ss_pred cCCCCCcEEEEEe-cchhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 288 KDDESGCTIILTS-RNRDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 288 ~~~~~gs~IlvTt-r~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
.....++.+|++| +...+..........+++.+++.++....+.+.+.... -.-..+.+..|++.+||-..-+
T Consensus 146 Eepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 146 EEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-ITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred hCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 2234556666555 44444433344566899999999999999988774222 2223467888999999966533
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00013 Score=92.85 Aligned_cols=176 Identities=13% Similarity=0.145 Sum_probs=108.9
Q ss_pred ccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCC---------------------CeEEE
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSF---------------------DKVVM 213 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f---------------------~~~~w 213 (1462)
...++|.+..++.|..++.++++. .+.++|+.|+||||+|+.+++...-.... .-+++
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e 93 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTE 93 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence 456789999999999999887654 57899999999999999999988421110 00122
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH----HccCcEEEEEcCCcccc--cccccCCCCccccccc
Q 046345 214 AEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL----KKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKER 287 (1462)
Q Consensus 214 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~ 287 (1462)
++...... .+.++.+.+.+ ..++.-++|+|+++... ..+. |++++
T Consensus 94 idaas~~~----------------------Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~Na-------LLK~L 144 (824)
T PRK07764 94 IDAASHGG----------------------VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNA-------LLKIV 144 (824)
T ss_pred ecccccCC----------------------HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHH-------HHHHH
Confidence 22111111 12222222221 13566789999997652 2222 22333
Q ss_pred cCCCCCcEEEEEecchh-hhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 288 KDDESGCTIILTSRNRD-LLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 288 ~~~~~gs~IlvTtr~~~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
..-...+.+|++|.+.+ +..........|++..++.++..+.+.+.+.... ..-..+....|++.++|.+..+
T Consensus 145 EEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 145 EEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 32445666676665443 3322344567899999999999988888763222 2223456778999999977443
No 116
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00019 Score=88.55 Aligned_cols=187 Identities=16% Similarity=0.191 Sum_probs=106.2
Q ss_pred ccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
...++|.+..++.+..++..+++ +.+.++|+.|+||||+|+.+++..--....+ .+..+.. .... .+
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~-------C~~~---~~ 84 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQE-------CIEN---VN 84 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhH-------HHHh---hc
Confidence 45678999999999999987664 4668999999999999999998763211100 0000000 0000 00
Q ss_pred CCC-----C-CCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEec-
Q 046345 235 MEF-----G-LNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSR- 301 (1462)
Q Consensus 235 ~~~-----~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr- 301 (1462)
... . ......+.++.+.+.+. .+++-++|+|++.... .+.++ ++++......+.+|++|.
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NAL-------LKtLEEPP~~tifILaTte 157 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNAL-------LKTLEEPPKHVIFILATTE 157 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHH-------HHHhhcCCCceEEEEEcCC
Confidence 000 0 00011222333333332 2567799999986542 22222 222222334555555544
Q ss_pred chhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHH
Q 046345 302 NRDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 302 ~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 362 (1462)
...+......+...+++.+++.++....+...+.... .....+.++.|++.++|-+.-+.
T Consensus 158 ~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-I~id~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 158 VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-ISYEKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred hhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 4333322344456899999999999988887663221 12234568889999999765433
No 117
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00016 Score=88.94 Aligned_cols=196 Identities=15% Similarity=0.188 Sum_probs=109.2
Q ss_pred ccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEE-ecCCCCHHHHHHHHHHHh
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAE-VTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 233 (1462)
...++|.+..+..+..++..+++. .+.++|+.|+||||+|+.+++...-....+...|.. +......-.....+...-
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 466889999999999998877654 588999999999999999999884321111001111 000000011111111110
Q ss_pred CCCC---C-CCcChHHHHHHHHHHH----HccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEec-c
Q 046345 234 GMEF---G-LNENTFQKAYRLCERL----KKEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSR-N 302 (1462)
Q Consensus 234 ~~~~---~-~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr-~ 302 (1462)
.... + ......+.+..+.+.+ ..+++-++|+||++.... .+.+ ++++......+.+|++|. .
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naL-------LK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAF-------LKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHH-------HHHHhCCCCCeEEEEEeCCh
Confidence 0000 0 0111123333343333 125677899999866422 2222 222222334555555554 3
Q ss_pred hhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch
Q 046345 303 RDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV 359 (1462)
Q Consensus 303 ~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 359 (1462)
..+..........+++.+++.++....+.+.+.... ..-..+.++.|++.++|...
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHH
Confidence 333323344567899999999998888877663211 12235678889999999554
No 118
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.90 E-value=0.00011 Score=86.63 Aligned_cols=180 Identities=18% Similarity=0.247 Sum_probs=101.7
Q ss_pred ccccchhHHHHHHHHHHhc----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...+.|+++.++++.+.+. . ...+-+.++|++|+|||++|+++++... ..| +.+. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~----~ 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVV----G 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecc----h
Confidence 3567899999998887764 1 1245689999999999999999999873 332 2221 1
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccc--ccc-------CCCCcccccccc--CCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL--DVV-------GIPYGDVEKERK--DDE 291 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--~~~-------~~~~~~l~~~~~--~~~ 291 (1462)
..+.... ++ ........+++......+.+|++||++....- ... ...+..+..... ...
T Consensus 190 ~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111111 00 11222333444443457789999999754110 000 000000000000 023
Q ss_pred CCcEEEEEecchhhhhhcc----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 292 SGCTIILTSRNRDLLEKDM----KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
.+.+||.||+......... .-...+++...+.++..++|..++......++ .....+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~--~~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED--VDLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc--CCHHHHHHHcCCCC
Confidence 4677888888654432111 12457999999999999999988753322221 12456777887754
No 119
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00016 Score=79.61 Aligned_cols=261 Identities=13% Similarity=0.161 Sum_probs=124.7
Q ss_pred HHHHHHHhHhHHHHHhhccchhchhhHHHHHH-HHHHHHHHHHHHHhhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHH
Q 046345 11 SIVSEGSKTLFKPIIRQVSYLFKYQSYIDELK-NQVRQLGYKREMVQQPVNQASLQRDEIYEGVTNWLNSVDEFSEGVAK 89 (1462)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~~~~~~~~~~e 89 (1462)
+|+..++.-++..-.+++-|+.++|..++.+- ++++.+....+.-+..+++....+.. .+.-=+++++....
T Consensus 470 gFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS----~KqAEkq~Ke~ltr--- 542 (807)
T KOG0066|consen 470 GFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKS----AKQAEKQVKEQLTR--- 542 (807)
T ss_pred chHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----hHHHHHHHHHHHHH---
Confidence 56888899999999999999999999877553 44555555555544444443322111 11111122221111
Q ss_pred HHhhhHHHhhcccccCCCCChhhhhHhhHHHHHHHHHHHHHhhcCCCcccccCCC---CCCCCccccCCcc-ccchhHHH
Q 046345 90 SIIDDEDRAKKSCFKGLCPNLISRYKLSKQAATTAEAAANLVGEGNFSNVSFRPT---PRSTGHIQVKDYE-AFDSRMKV 165 (1462)
Q Consensus 90 d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~gr~~~ 165 (1462)
.......+ +. -.+-..-..++..+..--.+.+..| +-.++..-..++. .|-|.+..
T Consensus 543 ----Kq~K~~~K-------nq---------~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpL 602 (807)
T KOG0066|consen 543 ----KQKKGGKK-------NQ---------NDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPL 602 (807)
T ss_pred ----HHHhcccc-------cc---------CccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCch
Confidence 00000000 00 0000011122333311112222211 1111122222222 23366666
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhc------cCCCeEEEEEecC------CCCHHHHHHH-----
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMED------KSFDKVVMAEVTQ------TPDHQKIQDK----- 228 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~------~~f~~~~wv~~~~------~~~~~~~~~~----- 228 (1462)
+..+..-+.-+ ..|+|||++|||||||.+.+.....+. .|--.+-|++-.. ..+..+.+..
T Consensus 603 FkkldFGiDmd--SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlp 680 (807)
T KOG0066|consen 603 FKKLDFGIDMD--SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLP 680 (807)
T ss_pred hhccccccccc--ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCC
Confidence 66554333222 378999999999999999999877442 1222344544221 1112111111
Q ss_pred ------HHHHhCCCCCC------CcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEE
Q 046345 229 ------LAFDLGMEFGL------NENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTI 296 (1462)
Q Consensus 229 ------i~~~l~~~~~~------~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~I 296 (1462)
-+..+|+.... ..+.-+..+..+..+.-+.+=+||||++.+..+++.+......+-+| .|. |
T Consensus 681 yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney-----~Gg-V 754 (807)
T KOG0066|consen 681 YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY-----NGG-V 754 (807)
T ss_pred hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc-----cCc-E
Confidence 11122222111 11223344445555545788899999999988877663322222111 344 7
Q ss_pred EEEecchhhh
Q 046345 297 ILTSRNRDLL 306 (1462)
Q Consensus 297 lvTtr~~~v~ 306 (1462)
||.|++....
T Consensus 755 i~VsHDeRLi 764 (807)
T KOG0066|consen 755 IMVSHDERLI 764 (807)
T ss_pred EEEeccccee
Confidence 7777776553
No 120
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.90 E-value=0.00011 Score=79.22 Aligned_cols=166 Identities=17% Similarity=0.159 Sum_probs=93.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
...+.|+|..|+|||.|.+++++.......-..+++++ ..++...+...+... ....+...+ .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~--~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRL--R 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHH--C
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhh--h
Confidence 34688999999999999999999986433323466665 345555555444221 112333444 2
Q ss_pred CcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh--------hhccCCCceEEccCCCHHHHHHH
Q 046345 258 KKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL--------EKDMKSQKNFLIEVLSKDEALQL 329 (1462)
Q Consensus 258 k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~--------~~~~~~~~~~~l~~L~~~ea~~l 329 (1462)
.-=+|++||++....-......+-.+.+.+ ...|.+||+|++..... ..+....-.+++++.+.++-.++
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~--~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRL--IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHH--HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHH--HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 444999999976532111100111111111 23467899999654221 12344556899999999999999
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 330 FECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 330 f~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
+.+.+.... -.-.+++++-|++.+.+..-.+..
T Consensus 175 l~~~a~~~~-~~l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 175 LQKKAKERG-IELPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHTT---S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHhC-CCCcHHHHHHHHHhhcCCHHHHHH
Confidence 998884221 113356777777777665554443
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00021 Score=85.59 Aligned_cols=178 Identities=14% Similarity=0.176 Sum_probs=107.3
Q ss_pred ccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhcc---------------------CCCeEEE
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDK---------------------SFDKVVM 213 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~---------------------~f~~~~w 213 (1462)
...++|.+..++.+..++..++. +.+.++|+.|+||||+|+.+++...-.. +++ +++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 45678999999999999987765 5688999999999999999999874211 111 111
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH----HccCcEEEEEcCCcccc--cccccCCCCccccccc
Q 046345 214 AEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL----KKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKER 287 (1462)
Q Consensus 214 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~ 287 (1462)
+....... .+.+..+.+.+ ..+++-++|+|+++... ..+. +.+++
T Consensus 95 i~g~~~~g----------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~-------LLk~l 145 (451)
T PRK06305 95 IDGASHRG----------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNS-------LLKTL 145 (451)
T ss_pred eeccccCC----------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHH-------HHHHh
Confidence 11101111 11111222211 12567799999986542 1222 22222
Q ss_pred cCCCCCcEEEEEecch-hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch-HHHHH
Q 046345 288 KDDESGCTIILTSRNR-DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV-ALSTI 364 (1462)
Q Consensus 288 ~~~~~gs~IlvTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 364 (1462)
.....++.+|++|.+. .+..........+++.+++.++....+.+.+... ...-..+.+..|++.++|-+. |+..+
T Consensus 146 Eep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e-g~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 146 EEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE-GIETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred hcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2233466666666433 2222223445689999999999988888776321 122345678899999999664 44433
No 122
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.8e-05 Score=59.77 Aligned_cols=37 Identities=32% Similarity=0.502 Sum_probs=21.9
Q ss_pred cceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC
Q 046345 571 GLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED 607 (1462)
Q Consensus 571 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~ 607 (1462)
+|++|++++|.|+.+|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4666666666666666556666666666666666554
No 123
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00028 Score=86.27 Aligned_cols=198 Identities=13% Similarity=0.136 Sum_probs=110.5
Q ss_pred CccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|.+..++.|..++.++++. .+.++|+.|+||||+|+.+++...-....+ +..++.. .....|...-
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~~~~ 83 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALAPNG 83 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhhccc
Confidence 3466889999999999999887755 468999999999999999998874211110 0000000 0011111000
Q ss_pred CCC-----CC-CCcChHHHHHHHHHHH----HccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEec
Q 046345 234 GME-----FG-LNENTFQKAYRLCERL----KKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSR 301 (1462)
Q Consensus 234 ~~~-----~~-~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr 301 (1462)
+.. .+ ......+.++.+.... ..+++-++|+|++.... ..+. +++++........+|++|.
T Consensus 84 ~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NA-------LLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNA-------LLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHH-------HHHHHhcCCCCeEEEEEeC
Confidence 000 00 0001122222222222 12566799999986542 2222 2222222444566665554
Q ss_pred -chhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch-HHHHHHHH
Q 046345 302 -NRDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV-ALSTIANA 367 (1462)
Q Consensus 302 -~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~~ 367 (1462)
...+..........+++.+++.++..+.+.+.+.... ..-..+.+..|++..+|-+. |+..+-.+
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-VVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3433333344457899999999999888887764222 12235667888999999774 44444433
No 124
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.85 E-value=4.8e-05 Score=80.66 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=34.7
Q ss_pred ccchhHHHHHHHHHHhc---cCCceEEEEEecCCCcHHHHHHHHHHHHhhc
Q 046345 158 AFDSRMKVFQDVVEAAK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 205 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~---~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~ 205 (1462)
.|+||+++++++...+. .+..+.+.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999993 4556799999999999999999999999755
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00043 Score=83.46 Aligned_cols=180 Identities=15% Similarity=0.177 Sum_probs=106.8
Q ss_pred CccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhcc-------------------CCCeEEEE
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDK-------------------SFDKVVMA 214 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~f~~~~wv 214 (1462)
....++|.+...+.+..++..++.. .+.++|+.|+||||+|+.++....-.. .+..++++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3456789999999999999876544 567899999999999999998863100 01112222
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCcccccccc
Q 046345 215 EVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERK 288 (1462)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~ 288 (1462)
+.+... ..+.++.+..... .+++-++|+|+++... ..+.+ .+++.
T Consensus 94 daas~~----------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naL-------Lk~LE 144 (486)
T PRK14953 94 DAASNR----------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNAL-------LKTLE 144 (486)
T ss_pred eCccCC----------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHH-------HHHHh
Confidence 221111 1122222222221 2567799999987542 22222 22222
Q ss_pred CCCCCcEEEEEecch-hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 289 DDESGCTIILTSRNR-DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 289 ~~~~gs~IlvTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
.......+|++|.+. .+..........+++.+++.++....+.+.+.... ..-..+.+..|++.++|.+..+...
T Consensus 145 epp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 145 EPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-IEYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred cCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 233455555555433 22222233445899999999999988888763221 1233567788999999977654443
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.00027 Score=84.71 Aligned_cols=184 Identities=14% Similarity=0.150 Sum_probs=111.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
..+.|+|..|+|||+|++++++.......-..+++++. .++...+...++... +......+.+ ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~--~~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEI--CQ 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHh--cc
Confidence 46889999999999999999997653322234555543 456666665543210 1222333333 23
Q ss_pred cEEEEEcCCcccc---cc-cccCCCCccccccccCCCCCcEEEEEecchhhh--------hhccCCCceEEccCCCHHHH
Q 046345 259 KVLIILDNIWTKL---EL-DVVGIPYGDVEKERKDDESGCTIILTSRNRDLL--------EKDMKSQKNFLIEVLSKDEA 326 (1462)
Q Consensus 259 ~~LlVlDdv~~~~---~~-~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~--------~~~~~~~~~~~l~~L~~~ea 326 (1462)
.-+||+||+.... .+ +.+...+..+ ...|..||+|+...... ..+...+-++.+++++.++-
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~------~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNF------IENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHH------HHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 4489999996542 11 2221112111 22355688887654221 12334456789999999999
Q ss_pred HHHHHHHhCCCCC-CCCchHHHHHHHHHccCCchHHHHHHHHH------h--cC--CHHHHHHHHHHH
Q 046345 327 LQLFECIVGDSAK-TSAIQPIADEIVERCEGLPVALSTIANAL------K--SK--SLDFWKDALYRL 383 (1462)
Q Consensus 327 ~~lf~~~~~~~~~-~~~~~~~~~~i~~~~~glPlai~~~~~~l------~--~~--~~~~w~~~~~~l 383 (1462)
.+++.+.+..... ..-.++++.-|++.++|.|..+.-+...+ . ++ +.+.-+.+++.+
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9999988843221 13447889999999999998876655333 2 12 455555555544
No 127
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.0018 Score=73.55 Aligned_cols=195 Identities=13% Similarity=0.119 Sum_probs=113.5
Q ss_pred cccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhc--------------cCCCeEEEEEecCCCC
Q 046345 157 EAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMED--------------KSFDKVVMAEVTQTPD 221 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~--------------~~f~~~~wv~~~~~~~ 221 (1462)
..++|.+...+.+...+.+++. +.+.++|+.|+||+++|..+++...-. .|.|. .|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl-~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDL-LWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCE-EEEecccccc
Confidence 4578999999999999988774 789999999999999999999987422 22232 3433210000
Q ss_pred HHHHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCc
Q 046345 222 HQKIQDKLAFDLGMEFG-LNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGC 294 (1462)
Q Consensus 222 ~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs 294 (1462)
...+-...+...+.... ...-..+.++.+.+.+. .+++-++|+|+++... ...++...+.+ .+ .+
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE-------Pp-~~ 154 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-------PG-NG 154 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC-------CC-CC
Confidence 00011111111111000 01112334445555442 2677799999986542 22222211111 22 34
Q ss_pred EEEEEecch-hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 295 TIILTSRNR-DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 295 ~IlvTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
.+|++|.+. .+......+...+++.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHHH
Confidence 566555544 33333445567899999999999999988753111 1112467899999999765543
No 128
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.78 E-value=5.9e-05 Score=85.61 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=63.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCcCh--HHHHH---HH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT--PDHQKIQDKLAFDLGMEFGLNENT--FQKAY---RL 250 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~---~l 250 (1462)
-..++|+|++|+|||||++.+++.... .+|+..+|+.+.+. .++.++++.+...+-...-..... ..... ..
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 348999999999999999999999864 48999999999865 788999999854332221111111 11111 11
Q ss_pred HHHH-HccCcEEEEEcCCccc
Q 046345 251 CERL-KKEKKVLIILDNIWTK 270 (1462)
Q Consensus 251 ~~~l-~~~k~~LlVlDdv~~~ 270 (1462)
.+++ .++++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 3589999999999754
No 129
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00051 Score=84.19 Aligned_cols=194 Identities=12% Similarity=0.147 Sum_probs=110.0
Q ss_pred CccccchhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|.+..++.+..++.+++.+ .+.++|+.|+||||+|+.+++...-...... ..+....+- +.|...-
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~~ 86 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDNDN 86 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcCC
Confidence 3467889999999999999876654 5889999999999999999998742111100 000000000 1111000
Q ss_pred CCC----CCCCcChHHHHHHHHHHH----HccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 234 GME----FGLNENTFQKAYRLCERL----KKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 234 ~~~----~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
... ........+.+..+.+.+ ..+++-++|+|++.... .++.+.. ++......+.+|++|...
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK-------~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLK-------TIEEPPPYIVFIFATTEV 159 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHH-------hhccCCCCEEEEEecCCh
Confidence 000 000001122222332221 13567799999987552 2333322 222244566666666543
Q ss_pred -hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 304 -DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 304 -~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
.+..........+++.+++.++....+.+.+.... ..-..+.+..|++.++|.+..+..
T Consensus 160 ~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 160 HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 23222234455799999999999888887763221 223457788899999998754433
No 130
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.78 E-value=0.00017 Score=83.73 Aligned_cols=151 Identities=16% Similarity=0.184 Sum_probs=86.9
Q ss_pred CCccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFD 232 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 232 (1462)
.....++|+++..+.+..++.+++. .++.++|++|+||||+|+.+++... .. +..++.+. .....+...+.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~---~~~i~~~~-~~~~~i~~~l~-- 89 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--AE---VLFVNGSD-CRIDFVRNRLT-- 89 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--cc---ceEeccCc-ccHHHHHHHHH--
Confidence 3456678999999999999987764 4666699999999999999998762 22 23344333 11111111111
Q ss_pred hCCCCCCCcChHHHHHHHHHHH-HccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh-hhcc
Q 046345 233 LGMEFGLNENTFQKAYRLCERL-KKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EKDM 310 (1462)
Q Consensus 233 l~~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~~~ 310 (1462)
...... ..+.+-++|+||++....-+.. . .+..++.....++++|+||...... ....
T Consensus 90 ----------------~~~~~~~~~~~~~vliiDe~d~l~~~~~~-~---~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 90 ----------------RFASTVSLTGGGKVIIIDEFDRLGLADAQ-R---HLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred ----------------HHHHhhcccCCCeEEEEECcccccCHHHH-H---HHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 111111 0135668999999754111100 0 0111111234577888888765433 1122
Q ss_pred CCCceEEccCCCHHHHHHHHHH
Q 046345 311 KSQKNFLIEVLSKDEALQLFEC 332 (1462)
Q Consensus 311 ~~~~~~~l~~L~~~ea~~lf~~ 332 (1462)
.....+.+...+.++..+++..
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHH
Confidence 3445778888888888776654
No 131
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.77 E-value=0.00025 Score=91.66 Aligned_cols=182 Identities=12% Similarity=0.137 Sum_probs=106.4
Q ss_pred CCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCC----CeEE-EEEecCCCCHHHHHHH
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSF----DKVV-MAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f----~~~~-wv~~~~~~~~~~~~~~ 228 (1462)
.....++||++++++++..+......-+.++|++|+||||+|+.++++.....-. +..+ .++++.-.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~-------- 255 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ-------- 255 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh--------
Confidence 3456789999999999998887666677899999999999999999987432211 1222 23222110
Q ss_pred HHHHhCCCCCCCcChHHHHHHHHHHHHc-cCcEEEEEcCCccccc-------ccc--cCCCCccccccccCCCCCcEEEE
Q 046345 229 LAFDLGMEFGLNENTFQKAYRLCERLKK-EKKVLIILDNIWTKLE-------LDV--VGIPYGDVEKERKDDESGCTIIL 298 (1462)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~-------~~~--~~~~~~~l~~~~~~~~~gs~Ilv 298 (1462)
+ +. .......+++..++..... +++.+|++|++..... .+. +..| .+ ....-++|-
T Consensus 256 -a---g~--~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp--~l------~~G~l~~Ig 321 (852)
T TIGR03345 256 -A---GA--SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP--AL------ARGELRTIA 321 (852)
T ss_pred -c---cc--ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH--Hh------hCCCeEEEE
Confidence 0 00 0011123445555555532 5789999999876421 111 1111 11 122345665
Q ss_pred Eecchhhh------hhccCCCceEEccCCCHHHHHHHHHHHhCC---CCCCCCchHHHHHHHHHccCC
Q 046345 299 TSRNRDLL------EKDMKSQKNFLIEVLSKDEALQLFECIVGD---SAKTSAIQPIADEIVERCEGL 357 (1462)
Q Consensus 299 Ttr~~~v~------~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~gl 357 (1462)
+|...+.- .........+.+++++.+++.+++...... .....-..+....+++.+.+.
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 55543220 112334568999999999999998655421 111122345666677777653
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00052 Score=85.16 Aligned_cols=196 Identities=12% Similarity=0.144 Sum_probs=110.9
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|.+...+.+..++..++. +.+.++|+.|+||||+|+.+++...-.. .+... ......-...+.+....
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~----~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPT----PEPCGKCELCRAIAAGN 88 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCC----CCCCcccHHHHHHhcCC
Confidence 345678999999999999887654 5788999999999999999999884211 11000 00111112222222221
Q ss_pred CCCC---C-CCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 234 GMEF---G-LNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 234 ~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
.... . ......+.++.+..... .+++-++|+|+++... ..+.+. +++......+.+|++|.+.
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLL-------K~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALL-------KTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHH-------HHHhcCCcCeEEEEEeCCh
Confidence 1100 0 01112233333333331 2566799999987542 233321 2222133445555555443
Q ss_pred -hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 304 -DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 304 -~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
.+..........+++..++.++....+.+.+..... .-..+.+..|++.++|.+..+..
T Consensus 162 ~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 162 QRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 333223344567888999999988888777642211 12246688899999998765443
No 133
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.0024 Score=67.63 Aligned_cols=182 Identities=18% Similarity=0.149 Sum_probs=101.7
Q ss_pred cCCccccchhHHHHHHHHHHhc-----cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQD 227 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 227 (1462)
+.....|+|.++..+++.-++. ......|.++|++|.||||||..+++..-++ +-+..+....-..-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn------~k~tsGp~leK~gD-- 93 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN------LKITSGPALEKPGD-- 93 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC------eEecccccccChhh--
Confidence 4456789999999999887766 2345588999999999999999999998432 11111111111111
Q ss_pred HHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccc-cccccCCCCcccccc----ccCCCCCc--------
Q 046345 228 KLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKL-ELDVVGIPYGDVEKE----RKDDESGC-------- 294 (1462)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-~~~~~~~~~~~l~~~----~~~~~~gs-------- 294 (1462)
...++..+ .+.=+|.+|++.... ..+++. ++.|.+| ..+.++++
T Consensus 94 -------------------laaiLt~L--e~~DVLFIDEIHrl~~~vEE~L--YpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 94 -------------------LAAILTNL--EEGDVLFIDEIHRLSPAVEEVL--YPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred -------------------HHHHHhcC--CcCCeEEEehhhhcChhHHHHh--hhhhhheeEEEEEccCCccceEeccCC
Confidence 11122222 122244455554220 000000 0001010 01122222
Q ss_pred ---EEEEEecchhhhhhccC-CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHH
Q 046345 295 ---TIILTSRNRDLLEKDMK-SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIAN 366 (1462)
Q Consensus 295 ---~IlvTtr~~~v~~~~~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 366 (1462)
-|=-|||.-.+...... -.-+.+++..+.+|-.+...+.+.- -...-.++.+.+|+++..|-|.-+.-+-+
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGIEIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCCCCChHHHHHHHHhccCCcHHHHHHHH
Confidence 24468886544421111 2347899999999999999888741 12223457799999999999975444333
No 134
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.75 E-value=0.00011 Score=84.98 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=73.4
Q ss_pred cccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 046345 157 EAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGME 236 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 236 (1462)
...++.+..++.+...+..++ .+.++|++|+|||++|+.+++.......|+.+.||.++...+..++...+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 446678888999999988766 78899999999999999999988655678889999999888766654322100 000
Q ss_pred CCCCcChHHHHHHHHHHHH--ccCcEEEEEcCCccc
Q 046345 237 FGLNENTFQKAYRLCERLK--KEKKVLIILDNIWTK 270 (1462)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 270 (1462)
.. .......++..... .++++++|+|++...
T Consensus 252 y~---~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FR---RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eE---ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 00111112222221 257899999999654
No 135
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0018 Score=77.38 Aligned_cols=160 Identities=20% Similarity=0.204 Sum_probs=93.0
Q ss_pred cchhHHHHHHHHHHhc------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 046345 159 FDSRMKVFQDVVEAAK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFD 232 (1462)
Q Consensus 159 ~~gr~~~~~~l~~~l~------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 232 (1462)
-||-++..++|+++|. +-+.+++++||++|||||+|++.+++.. ...| +-++++...|..++-..=-..
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al--~Rkf---vR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL--GRKF---VRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh--CCCE---EEEecCccccHHHhccccccc
Confidence 4688999999999986 2334699999999999999999999988 3444 445566655544432111111
Q ss_pred hCCCCCCCcChHHHHHHHHHHHH--ccCcEEEEEcCCcccccccccCCCCcccc-------------ccccCCCCCcEEE
Q 046345 233 LGMEFGLNENTFQKAYRLCERLK--KEKKVLIILDNIWTKLELDVVGIPYGDVE-------------KERKDDESGCTII 297 (1462)
Q Consensus 233 l~~~~~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~~~~~~~~l~-------------~~~~~~~~gs~Il 297 (1462)
+|.-. . ++.+.++ +.+.=+++||+++....- .-+.|...++ +|+--.-.=|+|+
T Consensus 400 IGamP-------G---rIiQ~mkka~~~NPv~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 400 IGAMP-------G---KIIQGMKKAGVKNPVFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccCC-------h---HHHHHHHHhCCcCCeEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 11111 1 2333332 356679999999743100 0001111100 0111011224455
Q ss_pred E-Eecch-h-hhhhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 298 L-TSRNR-D-LLEKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 298 v-Ttr~~-~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
+ +|-|. + .....+++..++++.+.+++|-.+.-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 33332 2 223345677899999999999988888776
No 136
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=6.8e-07 Score=104.20 Aligned_cols=106 Identities=26% Similarity=0.317 Sum_probs=55.1
Q ss_pred hhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccc--cccCCcEEEecCCCCCccchhhccccccCEE
Q 046345 566 FEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVG--QLKKLEILSFRDSDIKELPLEIGLLTRLSLL 643 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~--~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 643 (1462)
++-++.|+.|||++|.+++.- .+..|.+|+.|||++|.+...+.++ .+ +|+.|++++|.++.+ .+|.+|++|+.|
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhcc
Confidence 445555666666666655543 4555666666666666655522222 12 266666666655555 455566666666
Q ss_pred ccCCcccccccC-ccccccccccceeeccCccc
Q 046345 644 DLSDCWSLEVIA-PNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 644 ~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~ 675 (1462)
|+++| -+.... -..++.|..|+.|++.||.+
T Consensus 260 DlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66654 222211 01145555566666665544
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.73 E-value=0.00032 Score=82.81 Aligned_cols=178 Identities=19% Similarity=0.237 Sum_probs=99.1
Q ss_pred cccchhHHHHHHHHHHhc----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 157 EAFDSRMKVFQDVVEAAK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
..+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+++++... .. |+.+.. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh----H
Confidence 457799998888887653 1 2345689999999999999999999873 22 222211 1
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---------ccCCCCcccccccc--CCCC
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---------VVGIPYGDVEKERK--DDES 292 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~--~~~~ 292 (1462)
.+.... . .........+++......+.+|++||++....-. .....+..+..... ....
T Consensus 200 ~l~~~~---~-------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 ELVQKF---I-------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHhHhh---c-------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111110 0 0112233444444444577899999997531000 00000000100000 0223
Q ss_pred CcEEEEEecchhhhhhcc----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC
Q 046345 293 GCTIILTSRNRDLLEKDM----KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL 357 (1462)
Q Consensus 293 gs~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 357 (1462)
+..||.||.......... .-...+++...+.++..++|+.++.......+ .....+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCC
Confidence 567777887654432221 12357999999999999999988753222211 1134566666664
No 138
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.73 E-value=1.7e-05 Score=84.48 Aligned_cols=149 Identities=20% Similarity=0.225 Sum_probs=84.0
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC-----------C---CeEEEEEecC
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS-----------F---DKVVMAEVTQ 218 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~-----------f---~~~~wv~~~~ 218 (1462)
+.+....++....++.+.-.+..++ .++|+|++|+|||||.+.+..-..+... . ..+.||.=..
T Consensus 7 v~nl~v~y~~~~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 7 VENLTVSYGNRPVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred EeeeEEEECCEeeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccc
Confidence 3444444552256777766666776 9999999999999999999995532110 0 1233332111
Q ss_pred C------CCHH----------------------HHHHHHHHHhCCCCC-----CCcChHHHHHHHHHHHHccCcEEEEEc
Q 046345 219 T------PDHQ----------------------KIQDKLAFDLGMEFG-----LNENTFQKAYRLCERLKKEKKVLIILD 265 (1462)
Q Consensus 219 ~------~~~~----------------------~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~~~k~~LlVlD 265 (1462)
. .++. +...+.++.++...- ..-+.-+.++.+.++....++=|++||
T Consensus 85 ~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 85 SVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred ccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 1 1111 233334444443311 122334445555555445788899999
Q ss_pred CCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 266 NIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 266 dv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
++....|...-.... ++++.+ ...|..||++|++....
T Consensus 165 EP~~gvD~~~~~~i~-~lL~~l--~~eg~tIl~vtHDL~~v 202 (254)
T COG1121 165 EPFTGVDVAGQKEIY-DLLKEL--RQEGKTVLMVTHDLGLV 202 (254)
T ss_pred CCcccCCHHHHHHHH-HHHHHH--HHCCCEEEEEeCCcHHh
Confidence 998876543321111 111111 22399999999998765
No 139
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.72 E-value=4.4e-06 Score=100.47 Aligned_cols=103 Identities=25% Similarity=0.331 Sum_probs=57.6
Q ss_pred CCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCC
Q 046345 538 QCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKL 617 (1462)
Q Consensus 538 ~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L 617 (1462)
.+.++..|.+.+|. +.++... +..+.+|++|++++|.|+++. .+..+..|+.|++++|.+..+..+..+..|
T Consensus 93 ~~~~l~~l~l~~n~------i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 93 KLKSLEALDLYDNK------IEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSL 164 (414)
T ss_pred cccceeeeeccccc------hhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhh
Confidence 34555555555554 3333321 345566666666666666553 244455566666666666665555556666
Q ss_pred cEEEecCCCCCccchh-hccccccCEEccCCc
Q 046345 618 EILSFRDSDIKELPLE-IGLLTRLSLLDLSDC 648 (1462)
Q Consensus 618 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~ 648 (1462)
+.+++++|.+..+... ...+.+|+.+++.+|
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 6666666666555432 355566666666654
No 140
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.72 E-value=3.6e-06 Score=105.02 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=63.9
Q ss_pred cCCCCCccEEEEcccccceeee--ccccccccCceeeeccccccccCcC-ccccccc--cCCccccCCCcceEeeecccC
Q 046345 1122 VGIPQSLVNFKLSYCKKIEEII--GHVGEEVKGNHIAFNELKFLELDKL-PRLRSFC--LENYTLEFPSLERFSMKECRN 1196 (1462)
Q Consensus 1122 l~~l~~L~~L~l~~C~~l~~i~--~~~~~~~~~~~~~~~~L~~L~l~~c-~~L~~~~--~~~~~~~~~~L~~L~l~~c~~ 1196 (1462)
...+++|+.|.+.+|..+.... ... ..+++|+.|++.+| ....... .......++.|+.|++..|..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALA--------LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHH--------hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc
Confidence 3447788888888887776521 211 13577777777763 2222211 111334556666666666665
Q ss_pred cccccCCc--cccccceeEEeeeccccccccccccchhhhHHHHHHHhhccceEEEEecCCCc
Q 046345 1197 MKTFSQGA--LFTPKLCKVQMIENEEDDLHHWEGNLNSTIQKHYEEMCLNNLEVLEVRNCDSL 1257 (1462)
Q Consensus 1197 l~~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c~~l 1257 (1462)
++...... ..+++|+.|.+.+|. .+++.....+... +++|++|++++|..+
T Consensus 256 isd~~l~~l~~~c~~L~~L~l~~c~---------~lt~~gl~~i~~~-~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 256 VTDIGLSALASRCPNLETLSLSNCS---------NLTDEGLVSIAER-CPSLRELDLSGCHGL 308 (482)
T ss_pred cCchhHHHHHhhCCCcceEccCCCC---------ccchhHHHHHHHh-cCcccEEeeecCccc
Confidence 44222111 113566666666666 4555544555555 666666666666644
No 141
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=0.00012 Score=92.68 Aligned_cols=147 Identities=18% Similarity=0.176 Sum_probs=77.2
Q ss_pred ccCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc-C--CC---eEEEEEecC--CC---
Q 046345 152 QVKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK-S--FD---KVVMAEVTQ--TP--- 220 (1462)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-~--f~---~~~wv~~~~--~~--- 220 (1462)
...+...-+|....++.+.-.+..++ +++|+|++|+|||||++.+++...+.. . +. .+.++.-.. ..
T Consensus 314 ~~~~l~~~y~~~~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~ 391 (638)
T PRK10636 314 KMEKVSAGYGDRIILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRAD 391 (638)
T ss_pred EEEeeEEEeCCeeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCcc
Confidence 34444444454334555544445666 999999999999999999998764321 1 11 112221110 01
Q ss_pred -CHHH------------HHHHHHHHhCCCCC------CCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCc
Q 046345 221 -DHQK------------IQDKLAFDLGMEFG------LNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYG 281 (1462)
Q Consensus 221 -~~~~------------~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~ 281 (1462)
++.. -...++..++.... ..-+.-++....+....-.++-+||||++.+..|.........
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~ 471 (638)
T PRK10636 392 ESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471 (638)
T ss_pred chHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 1111 11223333443211 0112223333223323236778999999999877655432222
Q ss_pred cccccccCCCCCcEEEEEecchhhh
Q 046345 282 DVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 282 ~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.+.+ . .| .||++||+...+
T Consensus 472 ~L~~----~-~g-tvi~vSHd~~~~ 490 (638)
T PRK10636 472 ALID----F-EG-ALVVVSHDRHLL 490 (638)
T ss_pred HHHH----c-CC-eEEEEeCCHHHH
Confidence 2222 2 34 699999998776
No 142
>PRK05642 DNA replication initiation factor; Validated
Probab=97.69 E-value=0.00049 Score=75.19 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=90.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
..+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+ -
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~-~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQ-Y 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhh-C
Confidence 578999999999999999999877432 23567776432 1110 0122333321 1
Q ss_pred cEEEEEcCCccc---ccccc-cCCCCccccccccCCCCCcEEEEEecchhhh--------hhccCCCceEEccCCCHHHH
Q 046345 259 KVLIILDNIWTK---LELDV-VGIPYGDVEKERKDDESGCTIILTSRNRDLL--------EKDMKSQKNFLIEVLSKDEA 326 (1462)
Q Consensus 259 ~~LlVlDdv~~~---~~~~~-~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~--------~~~~~~~~~~~l~~L~~~ea 326 (1462)
=+||+||+... ..|+. +...+.. + ...|..||+|++..... ..+.....++++++++.++-
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~----~--~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNR----L--RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHH----H--HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 27889999643 23322 2111111 1 23467788888754322 11223346789999999999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHH
Q 046345 327 LQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 327 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
.++++.++.... -.-.+++..-|++++.|-..++..+-
T Consensus 172 ~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 172 LRALQLRASRRG-LHLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 999986653221 12225777888888877665554433
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00059 Score=84.58 Aligned_cols=195 Identities=12% Similarity=0.185 Sum_probs=108.8
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|.+...+.+..++..+++ +.+.++|+.|+||||+|+.+++...-....+. ...+.-.....|...-
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGR 86 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 346788999999999999988765 45689999999999999999988732111100 0000000111111000
Q ss_pred CCCC---C-CCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEecc-
Q 046345 234 GMEF---G-LNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSRN- 302 (1462)
Q Consensus 234 ~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~- 302 (1462)
.... + ......+.++.+...+. .+++-++|+|+++.... .+.+ ++++......+.+|++|.+
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naL-------Lk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNAL-------LKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHH-------HHHHHcCCCCeEEEEEeCCh
Confidence 0000 0 00111222333333321 24566899999865422 2222 2222223445666655544
Q ss_pred hhhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc-hHHHHH
Q 046345 303 RDLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP-VALSTI 364 (1462)
Q Consensus 303 ~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~ 364 (1462)
..+..........+++.+++.++....+...+.... ..-..+.+..|++.++|-. .|+..+
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 160 HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 434333344456889999999999888887664222 1223567788999999865 444444
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0009 Score=76.46 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=92.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhcc--------------------CCCeEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDK--------------------SFDKVVMAEVTQTPDHQKIQDKLAFDLGMEF 237 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 237 (1462)
.+.+.++|+.|+||||+|+.++....-.. |.| ..|+.-...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~------------------ 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEA------------------ 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCC------------------
Confidence 45688999999999999999999884221 112 122211100
Q ss_pred CCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecchhhh-hhcc
Q 046345 238 GLNENTFQKAYRLCERLK----KEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EKDM 310 (1462)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~~~ 310 (1462)
...-..+.++.+.+.+. .+++-++|+|+++.. .....+...+.+ ...++.+|+||.+.... ....
T Consensus 83 -~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-------Pp~~~~fiL~t~~~~~ll~TI~ 154 (328)
T PRK05707 83 -DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE-------PSGDTVLLLISHQPSRLLPTIK 154 (328)
T ss_pred -CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC-------CCCCeEEEEEECChhhCcHHHH
Confidence 00112233444444332 255667788999764 222332222221 34577788888776544 3334
Q ss_pred CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 311 KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 311 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
.+...+.+.+++.+++.+.+.+.... ...+.+..++..++|.|..+..
T Consensus 155 SRc~~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 155 SRCQQQACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred hhceeeeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHH
Confidence 45668999999999999998875421 1234566788999999975543
No 145
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.66 E-value=7e-06 Score=88.57 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=46.9
Q ss_pred hcCCcceEEEecCCCCC-----CCCcccCCCCcCcEEEecCcc---cCC--c-------cccccccCCcEEEecCCCCC-
Q 046345 567 EGTEGLKVLDFTGIHFS-----SLPSSLGRLTSLQTLCLHWCE---LED--I-------AIVGQLKKLEILSFRDSDIK- 628 (1462)
Q Consensus 567 ~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~---l~~--~-------~~i~~L~~L~~L~L~~~~i~- 628 (1462)
..+..+..|+||+|.+. .+-..+.+.++||.-++++-. +.. | +.+-..++|++||||.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 44566677777777664 244455566667766666532 111 2 23344557777777777443
Q ss_pred ccc----hhhccccccCEEccCCc
Q 046345 629 ELP----LEIGLLTRLSLLDLSDC 648 (1462)
Q Consensus 629 ~lp----~~i~~L~~L~~L~L~~~ 648 (1462)
+-+ .-+..++.|++|.|.+|
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC
Confidence 122 23456677777777776
No 146
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.0041 Score=70.65 Aligned_cols=195 Identities=16% Similarity=0.166 Sum_probs=121.0
Q ss_pred CccccchhHHHHHHHHHHhc----cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
......||+.+++.+.+|+. ....+.+-|.|.+|.|||.+...++.+......-..+++++...-....+++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34567899999999998876 34556888999999999999999999885332223457777776667778888887
Q ss_pred HHhCCCCCCCcChHHHHHHHHHHHHccC-cEEEEEcCCccccc--cccc--CCCCccccccccCCCCCcEEEEEecch--
Q 046345 231 FDLGMEFGLNENTFQKAYRLCERLKKEK-KVLIILDNIWTKLE--LDVV--GIPYGDVEKERKDDESGCTIILTSRNR-- 303 (1462)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~--~~~~--~~~~~~l~~~~~~~~~gs~IlvTtr~~-- 303 (1462)
..+-..........+....+..+..+.+ .+|+|+|+++.... -..+ ...|+ .-+++++|+.---.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp--------~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP--------KLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc--------cCCcceeeeeeehhhh
Confidence 7662111112223555566666665554 78999999875421 0111 01112 22455555432211
Q ss_pred hh-------hhh-ccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC
Q 046345 304 DL-------LEK-DMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL 357 (1462)
Q Consensus 304 ~v-------~~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 357 (1462)
+. ... ..-....+...+.+.++-.++|..+.......+.....++.+|+++.|.
T Consensus 300 DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 300 DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 11 110 1112357888999999999999998864444444444555555555543
No 147
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.65 E-value=3.3e-06 Score=105.39 Aligned_cols=142 Identities=20% Similarity=0.169 Sum_probs=95.8
Q ss_pred ccCCcEEEEecCCCccccc-CcCcCCCCCccEEEEccc-ccceeeeccccccccCceeeeccccccccCcCccccccccC
Q 046345 1100 FSKLKNLVIFRCNNLMNIF-PPLVGIPQSLVNFKLSYC-KKIEEIIGHVGEEVKGNHIAFNELKFLELDKLPRLRSFCLE 1177 (1462)
Q Consensus 1100 l~~L~~L~l~~c~~l~~~~-~~~l~~l~~L~~L~l~~C-~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 1177 (1462)
.+.|+.|.+.+|..+.... -.....++.|+.|++++| ......+.... .....+++|++|++..|..+++....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL----LLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh----hhhhhcCCcCccchhhhhccCchhHH
Confidence 5778888898888887631 122678899999999884 33322221000 01124688999999999888887765
Q ss_pred CccccCCCcceEeeecccCccc--ccCCccccccceeEEeeeccccccccccccchhhhHHHHHHHhhccceEEEEecCC
Q 046345 1178 NYTLEFPSLERFSMKECRNMKT--FSQGALFTPKLCKVQMIENEEDDLHHWEGNLNSTIQKHYEEMCLNNLEVLEVRNCD 1255 (1462)
Q Consensus 1178 ~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c~ 1255 (1462)
.....+++|+.|.+.+|..++. +......+++|++|++++|. .+....-...... +++|+.|.+..+.
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~---------~~~d~~l~~~~~~-c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH---------GLTDSGLEALLKN-CPNLRELKLLSLN 332 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc---------cchHHHHHHHHHh-CcchhhhhhhhcC
Confidence 5556689999999998987643 23333345789999999999 6655444444555 7777776655554
No 148
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=2.2e-06 Score=100.02 Aligned_cols=99 Identities=22% Similarity=0.281 Sum_probs=46.6
Q ss_pred ceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCccc
Q 046345 572 LKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWS 650 (1462)
Q Consensus 572 Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~ 650 (1462)
|.+.+.++|.+..+-.++.-+++|+.|+|++|++.....+..|.+|++|||++|.+..+|.- +..++ |+.|++++| .
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-A 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc-H
Confidence 44444455554444444444555555555555555444455555555555555555544431 11122 555555554 3
Q ss_pred ccccCccccccccccceeeccCcc
Q 046345 651 LEVIAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 651 l~~~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
++.+-. +.+|++|+.||++.|.
T Consensus 244 l~tL~g--ie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 244 LTTLRG--IENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHhhhh--HHhhhhhhccchhHhh
Confidence 433321 4555555555555443
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.64 E-value=0.00048 Score=88.62 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=95.0
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCC----CeEEEEEecCCCCHHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSF----DKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
....++||++++++++..|......-+.++|++|+|||++|+.+++......-. +..+|.- +... +.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~----l~ 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGS----LL 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHH----Hh
Confidence 345789999999999998887666677899999999999999999988432211 2333321 1111 11
Q ss_pred HHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--------c--cccCCCCccccccccCCCCCcEEEEEe
Q 046345 231 FDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--------L--DVVGIPYGDVEKERKDDESGCTIILTS 300 (1462)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------~--~~~~~~~~~l~~~~~~~~~gs~IlvTt 300 (1462)
.... . ....++++..+++.+...++.+|++|++..... . ..+.. +.+ ....-++|-+|
T Consensus 251 a~~~--~--~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~--~~l------~~g~i~~IgaT 318 (731)
T TIGR02639 251 AGTK--Y--RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLK--PAL------SSGKLRCIGST 318 (731)
T ss_pred hhcc--c--cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHH--HHH------hCCCeEEEEec
Confidence 0000 0 112345566666666545789999999874321 1 11111 111 11223455444
Q ss_pred cchhh----h--hhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 301 RNRDL----L--EKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 301 r~~~v----~--~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
...+. . .........++++.++.++..++++...
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 43221 1 1122345689999999999999998765
No 150
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.64 E-value=2.7e-05 Score=83.42 Aligned_cols=145 Identities=19% Similarity=0.234 Sum_probs=80.3
Q ss_pred ccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC---CC--------------eEEEEE-----
Q 046345 158 AFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS---FD--------------KVVMAE----- 215 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~---f~--------------~~~wv~----- 215 (1462)
.-||....++.+.-.+..++ +++|+|++|+|||||.+.+++-..+... .+ .+.++.
T Consensus 10 ~~y~~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~ 87 (258)
T COG1120 10 FGYGGKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA 87 (258)
T ss_pred EEECCeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC
Confidence 33455556666665566677 9999999999999999999997753210 00 011111
Q ss_pred ---------e--cCC--------CC--HHHHHHHHHHHhCCCCC-----CCcChHHHHHHHHHHHHccCcEEEEEcCCcc
Q 046345 216 ---------V--TQT--------PD--HQKIQDKLAFDLGMEFG-----LNENTFQKAYRLCERLKKEKKVLIILDNIWT 269 (1462)
Q Consensus 216 ---------~--~~~--------~~--~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 269 (1462)
| ++. .+ -.++..+.++.++...- ..-+.-+++..+.......+.-+|+||++.+
T Consensus 88 ~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs 167 (258)
T COG1120 88 PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167 (258)
T ss_pred CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcc
Confidence 0 000 01 11233333444432211 1233345555544444456777999999998
Q ss_pred cccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 270 KLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 270 ~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
..|...-...+.-+.+. ....|..||+++|+.+.|
T Consensus 168 ~LDi~~Q~evl~ll~~l--~~~~~~tvv~vlHDlN~A 202 (258)
T COG1120 168 HLDIAHQIEVLELLRDL--NREKGLTVVMVLHDLNLA 202 (258)
T ss_pred ccCHHHHHHHHHHHHHH--HHhcCCEEEEEecCHHHH
Confidence 86653221111111111 124578899999999888
No 151
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0011 Score=81.66 Aligned_cols=192 Identities=16% Similarity=0.177 Sum_probs=106.2
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|++...+.+..++..++. +.+.++|+.|+||||+|+.+++...-....+. ...+.-.....|....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITNGS 86 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 346788999999999999987653 45778999999999999999987632111000 0000001111111110
Q ss_pred CCCC----CCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 234 GMEF----GLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 234 ~~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
.... .......+.++.+..... .++.-++|+|++.... .+..+ ++++........+|++|...
T Consensus 87 ~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naL-------LKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNAL-------LKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHH-------HHHhcCCCCCeEEEEEeCCh
Confidence 0000 000011222233333321 2566799999997542 22222 22222133445555544433
Q ss_pred -hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 304 -DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 304 -~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
.+......+...+++.+++.++....+...+.... ..-..+.+..|++.++|-+..+
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEG-IEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 33322233456789999999999888888774221 1223567788899998877543
No 152
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=7.8e-05 Score=56.31 Aligned_cols=33 Identities=36% Similarity=0.566 Sum_probs=16.7
Q ss_pred CCcEEEecCCCCCccchhhccccccCEEccCCc
Q 046345 616 KLEILSFRDSDIKELPLEIGLLTRLSLLDLSDC 648 (1462)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~ 648 (1462)
+|++|++++|+|+.+|+.+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555555555555555555554
No 153
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.62 E-value=9.7e-06 Score=97.52 Aligned_cols=107 Identities=27% Similarity=0.366 Sum_probs=90.7
Q ss_pred hhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEcc
Q 046345 566 FEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDL 645 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 645 (1462)
+..++.|.+|++.+|.|..+...+..+.+|++|++++|.|+....+..+..|+.|++++|.|..++ ++..+++|+.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 567889999999999999887768899999999999999999888999999999999999998774 4666999999999
Q ss_pred CCcccccccCc-cccccccccceeeccCccc
Q 046345 646 SDCWSLEVIAP-NVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 646 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~ 675 (1462)
++| .+..+.. . +..+.+|+.+++.+|.+
T Consensus 170 ~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 170 SYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred Ccc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 998 5666555 2 36788899998888765
No 154
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.58 E-value=0.00076 Score=79.57 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=91.1
Q ss_pred ccccchhHHHHHHHHHHhc----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
+..+.|.+..++.+.+.+. . ...+-+.++|++|+|||++|+++++... ..|- .+..+.
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~fi---~V~~se---- 252 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATFL---RVVGSE---- 252 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCEE---EEecch----
Confidence 3456788888888777653 1 2345788999999999999999999873 3331 121111
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc--ccCC-------CCcccccccc--CCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD--VVGI-------PYGDVEKERK--DDE 291 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~--~~~~-------~~~~l~~~~~--~~~ 291 (1462)
+.... . ......+..++.......+.+|++|+++....-. .... .+..++..+- ...
T Consensus 253 --L~~k~---~-------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 --LIQKY---L-------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --hhhhh---c-------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 11100 0 0112233444444444678899999986431100 0000 0000000000 023
Q ss_pred CCcEEEEEecchhhhhhcc----CCCceEEccCCCHHHHHHHHHHHhCC
Q 046345 292 SGCTIILTSRNRDLLEKDM----KSQKNFLIEVLSKDEALQLFECIVGD 336 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~ 336 (1462)
.+.+||+||+..+...... .-...+++...+.++..++|..++..
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 4667888888766653222 12358899999999999999987743
No 155
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.0041 Score=74.62 Aligned_cols=183 Identities=14% Similarity=0.164 Sum_probs=107.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
...+.|+|+.|+|||+|++++++.......-..++|++. .++..++...+... . .....+.+. .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~----~~~f~~~~~-~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYR-K 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----c----HHHHHHHHH-h
Confidence 346899999999999999999998853222234677754 34555555544321 1 112222231 3
Q ss_pred CcEEEEEcCCccccc---c-cccCCCCccccccccCCCCCcEEEEEec-chhhhh-------hccCCCceEEccCCCHHH
Q 046345 258 KKVLIILDNIWTKLE---L-DVVGIPYGDVEKERKDDESGCTIILTSR-NRDLLE-------KDMKSQKNFLIEVLSKDE 325 (1462)
Q Consensus 258 k~~LlVlDdv~~~~~---~-~~~~~~~~~l~~~~~~~~~gs~IlvTtr-~~~v~~-------~~~~~~~~~~l~~L~~~e 325 (1462)
+.-+|++||+....+ + +.+...+..+ ...|..||+||. .+.... ........+++++.+.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l------~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNEL------HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHH------HHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 455899999975421 1 1111111111 223456888875 332221 123334588999999999
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHH------HhcC--CHHHHHHHHHHH
Q 046345 326 ALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANA------LKSK--SLDFWKDALYRL 383 (1462)
Q Consensus 326 a~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~------l~~~--~~~~w~~~~~~l 383 (1462)
-.+++++.+.... ..-.++++..|++...|....+.-+-.. +.++ +.+..++++..+
T Consensus 268 r~~IL~~~~~~~~-~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 268 RKKIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHhcC-CCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999998885321 2223678888999988865554432221 2223 666666666654
No 156
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0025 Score=75.73 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=93.8
Q ss_pred cccchhHHHHHHHHHHhc------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
..-||-++..++|++++. +-+-++++++|++|||||++|+.++...- ..| +.++++.-.|+.++-..=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhcccce
Confidence 345799999999999886 23446999999999999999999999883 333 4566776666655421111
Q ss_pred HHhCCCCCCCcChHHHHHHHHHHHH--ccCcEEEEEcCCcccc-----c----ccccCCCCc--ccc-ccccCCCCCcEE
Q 046345 231 FDLGMEFGLNENTFQKAYRLCERLK--KEKKVLIILDNIWTKL-----E----LDVVGIPYG--DVE-KERKDDESGCTI 296 (1462)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~-----~----~~~~~~~~~--~l~-~~~~~~~~gs~I 296 (1462)
.++|.- . -++.+.|+ +..+=|+++|+|+... | +-.+..|-. .+. .|+--.-.=|+|
T Consensus 486 TYVGAM-------P---GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 486 TYVGAM-------P---GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred eeeccC-------C---hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 111111 1 13444443 2455689999997431 0 001111100 000 010001123667
Q ss_pred EEEecchhhh---hhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 297 ILTSRNRDLL---EKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 297 lvTtr~~~v~---~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
++...-..+. ....++-..|++.+...+|-+++-.++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 7544322221 1234556789999999999887776665
No 157
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.56 E-value=0.00045 Score=75.74 Aligned_cols=166 Identities=10% Similarity=0.110 Sum_probs=93.3
Q ss_pred HHHHHHHHHhc-cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcC
Q 046345 164 KVFQDVVEAAK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNEN 242 (1462)
Q Consensus 164 ~~~~~l~~~l~-~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 242 (1462)
..+..+..+.. ....+.+.|+|..|+|||+||+.+++..... .. .+.+++..... ..+
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~-~~~~i~~~~~~------~~~------------- 85 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GR-NARYLDAASPL------LAF------------- 85 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CC-cEEEEehHHhH------HHH-------------
Confidence 33444444433 2334578999999999999999999987422 22 34445432211 000
Q ss_pred hHHHHHHHHHHHHccCcEEEEEcCCccccccc--ccCCCCccccccccCCCCCc-EEEEEecchhhhh-------hccCC
Q 046345 243 TFQKAYRLCERLKKEKKVLIILDNIWTKLELD--VVGIPYGDVEKERKDDESGC-TIILTSRNRDLLE-------KDMKS 312 (1462)
Q Consensus 243 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~--~~~~~~~~l~~~~~~~~~gs-~IlvTtr~~~v~~-------~~~~~ 312 (1462)
... .+.-++|+||+.....+. .+...+.. . ...+. .||+|++...... .....
T Consensus 86 ---------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~----~--~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 86 ---------DFD--PEAELYAVDDVERLDDAQQIALFNLFNR----V--RAHGQGALLVAGPAAPLALPLREDLRTRLGW 148 (227)
T ss_pred ---------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHH----H--HHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc
Confidence 111 233478999997542221 11111111 0 12333 4666666433211 02222
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHH
Q 046345 313 QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANAL 368 (1462)
Q Consensus 313 ~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 368 (1462)
...+++.++++++-..++.+.+... ...-.++..+.+++...|.+..+..+...+
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~-~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAER-GLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4689999999988777777654221 122335678888888999888876655544
No 158
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.56 E-value=0.002 Score=78.34 Aligned_cols=181 Identities=19% Similarity=0.224 Sum_probs=106.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
..+.|+|+.|+|||+|++++++.......-..+++++.. ++..++...+... ......+.+. +
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~~~~~~~--~ 211 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN---------TMEEFKEKYR--S 211 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC---------cHHHHHHHHh--c
Confidence 568899999999999999999998633222345666543 3333444333211 1122333332 3
Q ss_pred cEEEEEcCCccccc---c-cccCCCCccccccccCCCCCcEEEEEecchhhh--------hhccCCCceEEccCCCHHHH
Q 046345 259 KVLIILDNIWTKLE---L-DVVGIPYGDVEKERKDDESGCTIILTSRNRDLL--------EKDMKSQKNFLIEVLSKDEA 326 (1462)
Q Consensus 259 ~~LlVlDdv~~~~~---~-~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~--------~~~~~~~~~~~l~~L~~~ea 326 (1462)
.-+||+||+..... + +.+...+..+ ...|..|++||...... .........+++++.+.++-
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l------~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r 285 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNAL------HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETR 285 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHH------HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHH
Confidence 44899999965311 1 1111111111 12345578877654211 12333445899999999999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH----HHHH--HhcC--CHHHHHHHHHHH
Q 046345 327 LQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST----IANA--LKSK--SLDFWKDALYRL 383 (1462)
Q Consensus 327 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~----~~~~--l~~~--~~~~w~~~~~~l 383 (1462)
.+++.+.+... ...-.+++...|++.++|....+.- +.++ +.++ +.+..+.+++.+
T Consensus 286 ~~il~~~~~~~-~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 286 IAILKKKAEEE-GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 99999988532 2223467889999999988765433 2222 1223 667777777765
No 159
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.54 E-value=0.00092 Score=67.99 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=50.9
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT 219 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 219 (1462)
...+||-++.++++.-...+++.+-+.|.||+|+||||=+..+++...-..+-+++.=.++++.
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 4567899999999988888999999999999999999999999998864334445554444444
No 160
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.53 E-value=0.00011 Score=72.66 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhc
Q 046345 163 MKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 205 (1462)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~ 205 (1462)
.+.++.+.-.+..++ .+-++|++|+||||+.+.+|...++.
T Consensus 15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCC
Confidence 345666665566677 99999999999999999999998654
No 161
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=1e-05 Score=84.80 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=39.2
Q ss_pred CCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCcc
Q 046345 787 GFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHL 864 (1462)
Q Consensus 787 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 864 (1462)
-||++..+.+..|+ ++...... ....||.+--|.+.. .++.+|.... +...||.|..|.+.+.|-...+
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~ek-----~se~~p~~~~LnL~~-~~idswasvD--~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSEK-----GSEPFPSLSCLNLGA-NNIDSWASVD--ALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCc-ccchhhcc-----cCCCCCcchhhhhcc-cccccHHHHH--HHcCCchhheeeccCCcccccc
Confidence 36677777776664 22221111 234566666666665 5566664221 1246888888888887755544
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.52 E-value=0.00096 Score=86.95 Aligned_cols=186 Identities=13% Similarity=0.205 Sum_probs=103.7
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCC----CeEEEEEecCCCCHHHHHHHHHH
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSF----DKVVMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~ 231 (1462)
...++||++++++++..|......-+.++|++|+|||++|+.++.......-. +..+|. + +...+ ..
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----~a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----LA 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH----hc
Confidence 45679999999999999987655567899999999999999999987432111 234442 1 11111 10
Q ss_pred HhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccccc-CC-CCccccccccCCCCCcEEEEEecchhhh---
Q 046345 232 DLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVV-GI-PYGDVEKERKDDESGCTIILTSRNRDLL--- 306 (1462)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~-~~-~~~~l~~~~~~~~~gs~IlvTtr~~~v~--- 306 (1462)
+... ....++++..+++.+...++.+|++|++.....-..- +. ....+++... ....-++|.+|...+..
T Consensus 249 --g~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l-~rg~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 249 --GTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL-ARGELQCIGATTLDEYRKHI 323 (821)
T ss_pred --cCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH-hCCCcEEEEeCCHHHHHHHH
Confidence 1111 1123456666777666567899999999643211000 00 0001111000 11234555555544321
Q ss_pred ---hhccCCCceEEccCCCHHHHHHHHHHHhC---CCCCCCCchHHHHHHHHHcc
Q 046345 307 ---EKDMKSQKNFLIEVLSKDEALQLFECIVG---DSAKTSAIQPIADEIVERCE 355 (1462)
Q Consensus 307 ---~~~~~~~~~~~l~~L~~~ea~~lf~~~~~---~~~~~~~~~~~~~~i~~~~~ 355 (1462)
.........+.+...+.++...++..... ......-..++...+++..+
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~ 378 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSD 378 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 11223445789999999999888875431 10111122455555666554
No 163
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.49 E-value=0.0012 Score=79.22 Aligned_cols=181 Identities=20% Similarity=0.237 Sum_probs=105.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
..+.|+|+.|+|||+|++++++.......-..+++++. .++...+...+... . .....+.+. +
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~--~ 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKYR--S 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHHH--h
Confidence 46889999999999999999998863321234566653 33444444444221 1 122233332 2
Q ss_pred cEEEEEcCCcccccc----cccCCCCccccccccCCCCCcEEEEEecchhh-h-------hhccCCCceEEccCCCHHHH
Q 046345 259 KVLIILDNIWTKLEL----DVVGIPYGDVEKERKDDESGCTIILTSRNRDL-L-------EKDMKSQKNFLIEVLSKDEA 326 (1462)
Q Consensus 259 ~~LlVlDdv~~~~~~----~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v-~-------~~~~~~~~~~~l~~L~~~ea 326 (1462)
.-+||+||+.....- +.+...+..+ ...|..+|+|+..... . .........+++++.+.++-
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~------~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r 273 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNAL------HENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETR 273 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHH------HHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHH
Confidence 348999999754211 1111111111 1235567887764321 1 11223335799999999999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH----HHHH--hcC--CHHHHHHHHHHH
Q 046345 327 LQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI----ANAL--KSK--SLDFWKDALYRL 383 (1462)
Q Consensus 327 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~----~~~l--~~~--~~~~w~~~~~~l 383 (1462)
.+++.+.+.... ..-.+++...|++.+.|.+..+.-+ .++- .++ +.+..+.++...
T Consensus 274 ~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 274 LAILQKKAEEEG-LELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 999999885322 2223678899999999877654432 2211 222 666777777654
No 164
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.47 E-value=0.0015 Score=78.23 Aligned_cols=168 Identities=17% Similarity=0.237 Sum_probs=91.5
Q ss_pred CccccchhHHHHHHHHHHhcc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhccC---CCeEEEEEecC
Q 046345 155 DYEAFDSRMKVFQDVVEAAKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS---FDKVVMAEVTQ 218 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~---f~~~~wv~~~~ 218 (1462)
....+.|.+..++.+.+.+.- ...+-+.++|++|+|||++|+++++....... .....++++..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 345567888888888776531 23456889999999999999999998742211 12344444433
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH----HccCcEEEEEcCCcccccccccC-------CCCccccccc
Q 046345 219 TPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL----KKEKKVLIILDNIWTKLELDVVG-------IPYGDVEKER 287 (1462)
Q Consensus 219 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~~~~~~~-------~~~~~l~~~~ 287 (1462)
. .+... .. .........+++.. ..+++.++++|+++....-..-. ..+..++..+
T Consensus 260 ~----eLl~k-------yv---Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P----ELLNK-------YV---GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h----hhccc-------cc---chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 11110 00 01112222233322 23578999999997531100000 0001111111
Q ss_pred c--CCCCCcEEEEEecchhhhhhcc-C--C-CceEEccCCCHHHHHHHHHHHhCC
Q 046345 288 K--DDESGCTIILTSRNRDLLEKDM-K--S-QKNFLIEVLSKDEALQLFECIVGD 336 (1462)
Q Consensus 288 ~--~~~~gs~IlvTtr~~~v~~~~~-~--~-~~~~~l~~L~~~ea~~lf~~~~~~ 336 (1462)
- ....+..||.||...+...... . . ...+++...+.++..++|+.+...
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 0 0123455666666554432222 1 2 346999999999999999998753
No 165
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.45 E-value=0.0018 Score=71.51 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=106.5
Q ss_pred cccchhHHHHHHHHHHhccCC---ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 157 EAFDSRMKVFQDVVEAAKDDK---LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~---~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
+.|.+|+.++..+...+.+.. +..|.|+|-+|.|||.+.+.+.+... . ..+|+++-+.++.+.++..|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhccHHHHHHHHHHHh
Confidence 346799999999998887543 23558999999999999999999882 1 358999999999999999999998
Q ss_pred CCCCCCCcChH---HHHHHHHHHHH-------ccCcEEEEEcCCcccccccccCCCCcccccccc-CCCCCcEEEEEecc
Q 046345 234 GMEFGLNENTF---QKAYRLCERLK-------KEKKVLIILDNIWTKLELDVVGIPYGDVEKERK-DDESGCTIILTSRN 302 (1462)
Q Consensus 234 ~~~~~~~~~~~---~~~~~l~~~l~-------~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~-~~~~gs~IlvTtr~ 302 (1462)
+.........+ +........+. .++.++||||+++...|.++... +.+.+.-. -+.+...|+.....
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll--~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILL--QCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHH--HHHHHHHHHhCCCceEEEEeccc
Confidence 63322222211 11211111111 25689999999988766655422 21111111 12234444443333
Q ss_pred hhhh-hhccCCC--ceEEccCCCHHHHHHHHHHH
Q 046345 303 RDLL-EKDMKSQ--KNFLIEVLSKDEALQLFECI 333 (1462)
Q Consensus 303 ~~v~-~~~~~~~--~~~~l~~L~~~ea~~lf~~~ 333 (1462)
..-. ...++.. .++.....+.+|..+++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2221 1112333 36677788889988888653
No 166
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.45 E-value=7.7e-05 Score=75.65 Aligned_cols=145 Identities=14% Similarity=0.202 Sum_probs=86.8
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC--------------
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ-------------- 218 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-------------- 218 (1462)
..+...-||..+.++.+.-.+..++ +++|+|++|+|||||.+.+..-..++ .+.+|+.-..
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhc
Confidence 3445556677777777777777788 99999999999999999988766433 2344443211
Q ss_pred -----CC-------------------------CHHHHHHHHHHHhCCCCCC-----CcChHHHHHH-HHHHHHccCcEEE
Q 046345 219 -----TP-------------------------DHQKIQDKLAFDLGMEFGL-----NENTFQKAYR-LCERLKKEKKVLI 262 (1462)
Q Consensus 219 -----~~-------------------------~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~-l~~~l~~~k~~Ll 262 (1462)
.| ..++...+++..+|..... .-+.-+.++. +.+.| .=++-++
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL-aM~P~vm 158 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-AMDPKVM 158 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH-cCCCCEE
Confidence 01 1112222333444433221 1122222222 23333 4567799
Q ss_pred EEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 263 ILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 263 VlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
++|++.+..|.+..+..+.-+.+. ...|-..|+.||.-..|
T Consensus 159 LFDEPTSALDPElv~EVL~vm~~L---A~eGmTMivVTHEM~FA 199 (240)
T COG1126 159 LFDEPTSALDPELVGEVLDVMKDL---AEEGMTMIIVTHEMGFA 199 (240)
T ss_pred eecCCcccCCHHHHHHHHHHHHHH---HHcCCeEEEEechhHHH
Confidence 999999988776554333322222 45688899999987776
No 167
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0032 Score=71.23 Aligned_cols=173 Identities=16% Similarity=0.215 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhcc-----------------CCCeEEEEEecCCCCHHH
Q 046345 163 MKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDK-----------------SFDKVVMAEVTQTPDHQK 224 (1462)
Q Consensus 163 ~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~-----------------~f~~~~wv~~~~~~~~~~ 224 (1462)
+...+.+...+..++++ .+.++|+.|+||+++|..++....-.. |.| ..|+.......
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~--- 85 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT--- 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc---
Confidence 34566677777766644 688999999999999999998774221 111 12221000000
Q ss_pred HHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEE
Q 046345 225 IQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIIL 298 (1462)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~Ilv 298 (1462)
+.... ..-..+.++.+.+.+. .+++-++|+|+++.... -.++. +.+.....++.+|+
T Consensus 86 ---------~~k~~-~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLL-------KtLEEPp~~~~fiL 148 (319)
T PRK08769 86 ---------GDKLR-TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALL-------KTLEEPSPGRYLWL 148 (319)
T ss_pred ---------ccccc-ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHH-------HHhhCCCCCCeEEE
Confidence 00000 0012334444444442 25677999999976522 22221 11112445777777
Q ss_pred Eecchhhh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 299 TSRNRDLL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 299 Ttr~~~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
+|.+.... .....+...+.+.+++.+++.+.+.+. + ..++.+..++..++|.|+.+..
T Consensus 149 ~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~------~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 149 ISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G------VSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred EECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C------CChHHHHHHHHHcCCCHHHHHH
Confidence 77755443 334455668999999999998888653 2 1133466789999999986543
No 168
>CHL00181 cbbX CbbX; Provisional
Probab=97.43 E-value=0.0036 Score=70.34 Aligned_cols=138 Identities=12% Similarity=0.168 Sum_probs=70.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
..+.++|++|+||||+|+.+++.......-...-|+.++ ..++.... .+. .. .....+++. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~---~g~------~~-~~~~~~l~~---a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQY---IGH------TA-PKTKEVLKK---AM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHH---hcc------ch-HHHHHHHHH---cc
Confidence 357899999999999999999986422221111244433 11222111 111 11 112223222 22
Q ss_pred cEEEEEcCCcccc------cccccCCCCccccccccCCCCCcEEEEEecchhhhh-------hccCCCceEEccCCCHHH
Q 046345 259 KVLIILDNIWTKL------ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE-------KDMKSQKNFLIEVLSKDE 325 (1462)
Q Consensus 259 ~~LlVlDdv~~~~------~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~-------~~~~~~~~~~l~~L~~~e 325 (1462)
.-+|++|++.... ++.. .....+.+.......+.+||+++....... -...-...+.+.+++.+|
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~--e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGS--EAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred CCEEEEEccchhccCCCccchHH--HHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 3499999996521 1100 000001111111334566777765332210 011224579999999999
Q ss_pred HHHHHHHHhC
Q 046345 326 ALQLFECIVG 335 (1462)
Q Consensus 326 a~~lf~~~~~ 335 (1462)
..+++...+.
T Consensus 201 l~~I~~~~l~ 210 (287)
T CHL00181 201 LLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHH
Confidence 9999988873
No 169
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.43 E-value=0.00077 Score=75.35 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
....+.++|++|+||||+|+.+++...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999998863
No 170
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.42 E-value=0.0019 Score=75.76 Aligned_cols=180 Identities=18% Similarity=0.241 Sum_probs=98.8
Q ss_pred ccccchhHHHHHHHHHHhc----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...+.|-+..++.+.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f---i~i~~------ 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF---IRVVG------ 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE---EEEeh------
Confidence 4456777777777666543 1 2356789999999999999999999763 232 22211
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccc--------c-ccCCCCcccccccc--CCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL--------D-VVGIPYGDVEKERK--DDE 291 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--------~-~~~~~~~~l~~~~~--~~~ 291 (1462)
..+... .++ ........++.......+.+|++|+++....- + .....+..++...- ...
T Consensus 213 s~l~~k---~~g-------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 SEFVQK---YLG-------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHHHHH---hcc-------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111111 111 11223444555554578899999998753100 0 00000011111110 123
Q ss_pred CCcEEEEEecchhhhhhc-cC---CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 292 SGCTIILTSRNRDLLEKD-MK---SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v~~~~-~~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
.+..||+||...+..... .. -...+++...+.++..++|..........++ -...++++...|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE--VDLEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc--cCHHHHHHHcCCCC
Confidence 466788888876655222 21 2347899999999988888877643221111 11345666666653
No 171
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.39 E-value=0.00013 Score=74.82 Aligned_cols=120 Identities=16% Similarity=0.229 Sum_probs=66.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCcChHHHH-HH
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT--PDHQKIQDKLAFDLGMEFGLNENTFQKA-YR 249 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~ 249 (1462)
+..++ +++|+|++|+|||||++.++.... ...+.+++.-... .+..+. ....++.... -+.-+.. -.
T Consensus 23 i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~q--LS~G~~qrl~ 92 (163)
T cd03216 23 VRRGE--VHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQ--LSVGERQMVE 92 (163)
T ss_pred EeCCC--EEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEe--cCHHHHHHHH
Confidence 34566 999999999999999999998763 2334444432111 111111 1111111111 2222222 22
Q ss_pred HHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 250 LCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 250 l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
+...+ -.++-++++|++.+..|..........+.+. ...|..||++|++...+
T Consensus 93 laral-~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 93 IARAL-ARNARLLILDEPTAALTPAEVERLFKVIRRL---RAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHH-hcCCCEEEEECCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHHH
Confidence 33334 3678899999998876654432222222111 23467799999987654
No 172
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=8.1e-05 Score=93.03 Aligned_cols=88 Identities=24% Similarity=0.302 Sum_probs=61.3
Q ss_pred CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC---cccccc
Q 046345 537 LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED---IAIVGQ 613 (1462)
Q Consensus 537 ~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~---~~~i~~ 613 (1462)
..+|.||+|.+.+-.. ...=-...+.++++|+.||+|+++++.+ ..+++|+||++|.+++=.+.. ...+.+
T Consensus 145 ~~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred hhCcccceEEecCcee-----cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 4578888888876431 0000123456788888888888888877 678888888888887766654 467778
Q ss_pred ccCCcEEEecCCCCCcc
Q 046345 614 LKKLEILSFRDSDIKEL 630 (1462)
Q Consensus 614 L~~L~~L~L~~~~i~~l 630 (1462)
|++|++||+|...-..-
T Consensus 219 L~~L~vLDIS~~~~~~~ 235 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDD 235 (699)
T ss_pred ccCCCeeeccccccccc
Confidence 88888888887644433
No 173
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00016 Score=74.22 Aligned_cols=139 Identities=19% Similarity=0.260 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhc--c---CCC-----------------eEEEEEecCCC
Q 046345 163 MKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMED--K---SFD-----------------KVVMAEVTQTP 220 (1462)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~--~---~f~-----------------~~~wv~~~~~~ 220 (1462)
.+.++.+.-.+..++ +.+|.|++|+||||||..+..+...+ . -|+ ..+|-.-.+-+
T Consensus 17 keILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~ 94 (251)
T COG0396 17 KEILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP 94 (251)
T ss_pred hhhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC
Confidence 355555555555777 99999999999999999999887321 0 111 11222211111
Q ss_pred --CHHHHH---------------------HHHHHHhCCCCC-------CCcC-hHHHHHHHHHHHHccCcEEEEEcCCcc
Q 046345 221 --DHQKIQ---------------------DKLAFDLGMEFG-------LNEN-TFQKAYRLCERLKKEKKVLIILDNIWT 269 (1462)
Q Consensus 221 --~~~~~~---------------------~~i~~~l~~~~~-------~~~~-~~~~~~~l~~~l~~~k~~LlVlDdv~~ 269 (1462)
+...++ ++.+..++.... ..-+ .+.....+.+-+. -++-+.|||++++
T Consensus 95 GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~-lePkl~ILDE~DS 173 (251)
T COG0396 95 GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL-LEPKLAILDEPDS 173 (251)
T ss_pred CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh-cCCCEEEecCCCc
Confidence 122222 222333332221 0011 1222333444442 5777999999999
Q ss_pred cccccccCCCCccccccccCCCCCcEEEEEecchhhhh
Q 046345 270 KLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE 307 (1462)
Q Consensus 270 ~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~ 307 (1462)
..|.+++...-..+.++ ...|+.+++.||++.++.
T Consensus 174 GLDIdalk~V~~~i~~l---r~~~~~~liITHy~rll~ 208 (251)
T COG0396 174 GLDIDALKIVAEGINAL---REEGRGVLIITHYQRLLD 208 (251)
T ss_pred CccHHHHHHHHHHHHHH---hcCCCeEEEEecHHHHHh
Confidence 98888775433322222 345777999999998884
No 174
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0042 Score=70.36 Aligned_cols=178 Identities=10% Similarity=0.079 Sum_probs=100.3
Q ss_pred HHHHHHHHHhccCC-ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCC-----CC
Q 046345 164 KVFQDVVEAAKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGM-----EF 237 (1462)
Q Consensus 164 ~~~~~l~~~l~~~~-~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~ 237 (1462)
...+.+...+..++ .+.+.+.|+.|+||+++|+.++....-...... .....-..-+.+...-.. ..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 34566777777655 357789999999999999999998742211100 000000111111100000 00
Q ss_pred -CCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecchhhh-hhc
Q 046345 238 -GLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EKD 309 (1462)
Q Consensus 238 -~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~~ 309 (1462)
....-..+.++.+.+.+. .+++-++|+|+++... ...++...+. ....++.+|++|.+.... ...
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE-------EPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE-------EPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc-------CCCCCeEEEEEECChHhCchHH
Confidence 000112344444444442 3677799999997652 2222222222 245567777777765443 333
Q ss_pred cCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 310 MKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 310 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
..+...+.+.+++.++..+.+....+. ....+...++.++|.|..+
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~~~------~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQSSA------EISEILTALRINYGRPLLA 200 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHhcc------ChHHHHHHHHHcCCCHHHH
Confidence 445668999999999999888876431 1223566788999999633
No 175
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.36 E-value=0.0011 Score=78.13 Aligned_cols=137 Identities=24% Similarity=0.274 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCCC
Q 046345 161 SRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTP-DHQKIQDKLAFDLGMEFGL 239 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~ 239 (1462)
.|.....++...+..... ++.|.|+-++||||+++.+....... .+++...+.. +..++
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-------------- 80 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-------------- 80 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH--------------
Confidence 344566666666554443 99999999999999997777666322 4555443321 11111
Q ss_pred CcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh-----hhccCCCc
Q 046345 240 NENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-----EKDMKSQK 314 (1462)
Q Consensus 240 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-----~~~~~~~~ 314 (1462)
.+....+ ..+...++..++||+|....+|+.....+.+ .++. +|++|+-+.... ....+...
T Consensus 81 ----~d~~~~~-~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d-------~~~~-~v~itgsss~ll~~~~~~~L~GR~~ 147 (398)
T COG1373 81 ----LDLLRAY-IELKEREKSYIFLDEIQNVPDWERALKYLYD-------RGNL-DVLITGSSSSLLSKEISESLAGRGK 147 (398)
T ss_pred ----HHHHHHH-HHhhccCCceEEEecccCchhHHHHHHHHHc-------cccc-eEEEECCchhhhccchhhhcCCCce
Confidence 0111111 1111236789999999999999875444433 3333 788888776554 22345567
Q ss_pred eEEccCCCHHHHHHHH
Q 046345 315 NFLIEVLSKDEALQLF 330 (1462)
Q Consensus 315 ~~~l~~L~~~ea~~lf 330 (1462)
.+++-||+..|-..+.
T Consensus 148 ~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 148 DLELYPLSFREFLKLK 163 (398)
T ss_pred eEEECCCCHHHHHhhc
Confidence 8999999999987653
No 176
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.36 E-value=0.00034 Score=72.09 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=60.7
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEE------ecCCCCHHHHHHHHHHHhCCCCCCCcChHHH
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAE------VTQTPDHQKIQDKLAFDLGMEFGLNENTFQK 246 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 246 (1462)
+..++ +++|+|++|+|||||++.++...... .+.+++. +.+... -+.-++
T Consensus 22 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~q~~~-------------------LSgGq~ 77 (177)
T cd03222 22 VKEGE--VIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGITPVYKPQYID-------------------LSGGEL 77 (177)
T ss_pred ECCCC--EEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEEEEEEcccCC-------------------CCHHHH
Confidence 34566 99999999999999999999876432 2222221 111110 122222
Q ss_pred H-HHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 247 A-YRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 247 ~-~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
. -.+...+ -.++-++++|++....|..........+.+. . ...+..||++||+....
T Consensus 78 qrv~laral-~~~p~lllLDEPts~LD~~~~~~l~~~l~~~-~-~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 78 QRVAIAAAL-LRNATFYLFDEPSAYLDIEQRLNAARAIRRL-S-EEGKKTALVVEHDLAVL 135 (177)
T ss_pred HHHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHH-H-HcCCCEEEEEECCHHHH
Confidence 2 2233334 3677899999998876654332211111111 0 11236799999987665
No 177
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0094 Score=67.37 Aligned_cols=165 Identities=12% Similarity=0.156 Sum_probs=98.7
Q ss_pred HHHHHHHHHhccCC-ceEEEEEecCCCcHHHHHHHHHHHHhhcc-------------------CCCeEEEEEecCCCCHH
Q 046345 164 KVFQDVVEAAKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVMEDK-------------------SFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 164 ~~~~~l~~~l~~~~-~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~ 223 (1462)
+..+.+...+..++ .+.+.+.|+.|+||+++|+.++....-.+ |.|. .|+.-...
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~---- 84 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEKE---- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCcC----
Confidence 44566666666555 45788999999999999999998773211 2222 12211000
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEE
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTII 297 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~Il 297 (1462)
. ..-..+.++.+.+.+. .++.-++|+|+++... ...++...+.+ ...++.+|
T Consensus 85 --------------~-~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fi 142 (319)
T PRK06090 85 --------------G-KSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-------PAPNCLFL 142 (319)
T ss_pred --------------C-CcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-------CCCCeEEE
Confidence 0 0011233333333331 2566799999997652 22332222222 44567777
Q ss_pred EEecchh-hhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 298 LTSRNRD-LLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 298 vTtr~~~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
++|.+.. +..+...+...+.+.+++.+++.+.+.+... . .+..+++.++|.|+.+...
T Consensus 143 L~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~-~--------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 143 LVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI-T--------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-c--------hHHHHHHHcCCCHHHHHHH
Confidence 7766654 4444455566899999999999988865421 1 2456789999999876543
No 178
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0034 Score=72.41 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=88.6
Q ss_pred cch-hHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhcc--------------------CCCeEEEEEe
Q 046345 159 FDS-RMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDK--------------------SFDKVVMAEV 216 (1462)
Q Consensus 159 ~~g-r~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~ 216 (1462)
++| .+..++.+...+..++. +.+.++|+.|+||||+|+.+++...-.. |.|..+ +..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~-i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL-VAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE-ecc
Confidence 455 77788888888877664 4668999999999999999998874221 222211 110
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccCC
Q 046345 217 TQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDD 290 (1462)
Q Consensus 217 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~ 290 (1462)
.. .....+.+..+.+.+. .+++-++|+|+++.... .+.+ ++++...
T Consensus 86 ~~---------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaL-------LK~LEEP 137 (329)
T PRK08058 86 DG---------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSL-------LKFLEEP 137 (329)
T ss_pred cc---------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHH-------HHHhcCC
Confidence 00 0111233333333332 25667899999865422 2222 2222224
Q ss_pred CCCcEEEEEecchhh-hhhccCCCceEEccCCCHHHHHHHHHHH
Q 046345 291 ESGCTIILTSRNRDL-LEKDMKSQKNFLIEVLSKDEALQLFECI 333 (1462)
Q Consensus 291 ~~gs~IlvTtr~~~v-~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 333 (1462)
..++.+|++|++..- ......+...+++.+++.++..+.+.+.
T Consensus 138 p~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 138 SGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 567777777765543 3333455678999999999998887653
No 179
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=3.7e-05 Score=71.40 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=65.9
Q ss_pred hcCCcceEEEecCCCCCCCCcccCCC-CcCcEEEecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEc
Q 046345 567 EGTEGLKVLDFTGIHFSSLPSSLGRL-TSLQTLCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLD 644 (1462)
Q Consensus 567 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L-~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 644 (1462)
.+..+|...+|++|.+.++|..|... +.+.+|++.+|.+++ |..+..++.|+.|+++.|.+...|.-|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 45566777788888888887766443 477888888888777 7677788888888888888887887777788888887
Q ss_pred cCCcccccccCcc
Q 046345 645 LSDCWSLEVIAPN 657 (1462)
Q Consensus 645 L~~~~~l~~~p~~ 657 (1462)
..++ ....+|.+
T Consensus 130 s~~n-a~~eid~d 141 (177)
T KOG4579|consen 130 SPEN-ARAEIDVD 141 (177)
T ss_pred CCCC-ccccCcHH
Confidence 7776 34445443
No 180
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.32 E-value=0.002 Score=79.30 Aligned_cols=183 Identities=14% Similarity=0.207 Sum_probs=97.3
Q ss_pred ccccchhHHHHHHHHH---Hhcc---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 156 YEAFDSRMKVFQDVVE---AAKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~---~l~~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
...+.|-++..+++.+ ++.. ...+-+.++|++|+|||++|+.+++... .. ++.++ ..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~----~~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSIS----GS 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeecc----HH
Confidence 4456676665554443 3321 1234588999999999999999998762 22 22222 11
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccc------------cccCCC-CccccccccCC
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL------------DVVGIP-YGDVEKERKDD 290 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~------------~~~~~~-~~~l~~~~~~~ 290 (1462)
++.... .+ ........+++......+.+|++||++....- ...... +..+ +.+ ..
T Consensus 123 ~~~~~~---~g-------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~-d~~-~~ 190 (495)
T TIGR01241 123 DFVEMF---VG-------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM-DGF-GT 190 (495)
T ss_pred HHHHHH---hc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhh-ccc-cC
Confidence 111111 01 11233444555544567789999999653110 000000 0000 000 12
Q ss_pred CCCcEEEEEecchhhhhhcc----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC-chHHHH
Q 046345 291 ESGCTIILTSRNRDLLEKDM----KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL-PVALST 363 (1462)
Q Consensus 291 ~~gs~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~ 363 (1462)
..+..||.||.......... .-...+++...+.++-.++|+.+.......+ ......+++.+.|. +-.|..
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCCHHHHHH
Confidence 33455666776654332111 1235789999999999999988875322211 22345788888774 333433
No 181
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.32 E-value=0.00049 Score=72.13 Aligned_cols=125 Identities=17% Similarity=0.232 Sum_probs=68.3
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEec--CCCCHHHHH------HHHHHHhCCCCCC-----C
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVT--QTPDHQKIQ------DKLAFDLGMEFGL-----N 240 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~------~~i~~~l~~~~~~-----~ 240 (1462)
..++ +++|+|++|+|||||++.++..... ..+.+++.-. ...+..... .++++.++..... .
T Consensus 23 ~~G~--~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~ 97 (180)
T cd03214 23 EAGE--IVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNE 97 (180)
T ss_pred CCCC--EEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCccc
Confidence 3455 9999999999999999999987632 2333333211 111222211 1244555543211 1
Q ss_pred cChHHHH-HHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 241 ENTFQKA-YRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 241 ~~~~~~~-~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
-+.-+.. -.+...+ -..+-++++|++....|.+........+.+. . ...|..||++|++....
T Consensus 98 LS~G~~qrl~laral-~~~p~llllDEP~~~LD~~~~~~~~~~l~~~-~-~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 98 LSGGERQRVLLARAL-AQEPPILLLDEPTSHLDIAHQIELLELLRRL-A-RERGKTVVMVLHDLNLA 161 (180)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-H-HhcCCEEEEEeCCHHHH
Confidence 1222222 2233344 3688899999999876654432221111111 1 11267899999987765
No 182
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00076 Score=85.35 Aligned_cols=165 Identities=16% Similarity=0.211 Sum_probs=94.6
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc-C---CCeEEEEEecCCCCHHHHHHHHHH
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK-S---FDKVVMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~~ 231 (1462)
...++||++++++++..+......-+.++|++|+|||++|+.+++...... . .+..+|.. +... +..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc
Confidence 456899999999999988865555677999999999999999998764322 1 13344421 1111 110
Q ss_pred HhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccc-cCC--CCccccccccCCCCCcEEEEEecchhhh--
Q 046345 232 DLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDV-VGI--PYGDVEKERKDDESGCTIILTSRNRDLL-- 306 (1462)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~-~~~--~~~~l~~~~~~~~~gs~IlvTtr~~~v~-- 306 (1462)
+... ....++....+...+.+.++.+|++|++.....-.. -.. ....+++... ....-+||-+|...+..
T Consensus 256 --G~~~--~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-~~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 --GTKY--RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SSGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred --ccch--hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-hCCCeEEEecCChHHHHHH
Confidence 1110 112334555666666556778999999975311000 000 0000011001 12234455555443321
Q ss_pred ----hhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 307 ----EKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 307 ----~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
.........+.++..+.+++.+++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122345689999999999999998765
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.31 E-value=0.0013 Score=67.13 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHhccCCce-EEEEEecCCCcHHHHHHHHHHHHhhccCC------------------CeEEEEEecCC--
Q 046345 161 SRMKVFQDVVEAAKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVMEDKSF------------------DKVVMAEVTQT-- 219 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~-vv~I~G~~GvGKTtLa~~~~~~~~~~~~f------------------~~~~wv~~~~~-- 219 (1462)
|.++..+.+...+..++.+ .+.++|+.|+||+++|..+++...-.... .-+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5677788888888876654 68999999999999999999987432221 11333332221
Q ss_pred -CCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEE
Q 046345 220 -PDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTI 296 (1462)
Q Consensus 220 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~I 296 (1462)
....++. ++...+..... .++.-++|+||++.. ....++... +.....++++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~-------LEepp~~~~f 135 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKT-------LEEPPENTYF 135 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHH-------HHSTTTTEEE
T ss_pred hhhHHHHH-HHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHH-------hcCCCCCEEE
Confidence 2222222 23322222211 256789999999875 223333222 2225568888
Q ss_pred EEEecchhhh-hhccCCCceEEccCCC
Q 046345 297 ILTSRNRDLL-EKDMKSQKNFLIEVLS 322 (1462)
Q Consensus 297 lvTtr~~~v~-~~~~~~~~~~~l~~L~ 322 (1462)
|++|++.... .....+...+.+.+++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEECChHHChHHHHhhceEEecCCCC
Confidence 8888877643 3344455567776654
No 184
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.31 E-value=0.0041 Score=70.03 Aligned_cols=137 Identities=13% Similarity=0.114 Sum_probs=70.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCc
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKK 259 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 259 (1462)
-+.++|++|+|||++|+.+++...........-|+.++. .++ ...+.. ... .....+++.. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g-----~~~-~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG-----HTA-PKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc-----cch-HHHHHHHHHc---cC
Confidence 578999999999999999988775322222112444332 122 111111 111 1222333322 33
Q ss_pred EEEEEcCCcccc------cccccCCCCccccccccCCCCCcEEEEEecchhhhh-h------ccCCCceEEccCCCHHHH
Q 046345 260 VLIILDNIWTKL------ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE-K------DMKSQKNFLIEVLSKDEA 326 (1462)
Q Consensus 260 ~LlVlDdv~~~~------~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~-~------~~~~~~~~~l~~L~~~ea 326 (1462)
-+|++||+.... ++..- ....+.+.......+.+||+++.....-. . ...-...+++.+++.+|-
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~--~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQE--AIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cEEEEechhhhccCCCccchHHH--HHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 589999996321 11100 00011111111334566666665321110 0 011135799999999999
Q ss_pred HHHHHHHhC
Q 046345 327 LQLFECIVG 335 (1462)
Q Consensus 327 ~~lf~~~~~ 335 (1462)
.+++...+.
T Consensus 201 ~~I~~~~l~ 209 (284)
T TIGR02880 201 LVIAGLMLK 209 (284)
T ss_pred HHHHHHHHH
Confidence 999988774
No 185
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=0.00011 Score=92.01 Aligned_cols=89 Identities=19% Similarity=0.323 Sum_probs=53.6
Q ss_pred ccChhhhhcCCcceEEEecCCCCC--CCCcccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccc--hhhc
Q 046345 560 QMSDLFFEGTEGLKVLDFTGIHFS--SLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELP--LEIG 635 (1462)
Q Consensus 560 ~l~~~~f~~l~~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp--~~i~ 635 (1462)
..+..+...++.||.|.+++-.+. ++-.-..+++||+.||+++++++....+++|++|++|.+++=.+..-+ ..+.
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 344455556677777777765543 222334566667777777777766666777777777766655444221 3456
Q ss_pred cccccCEEccCCc
Q 046345 636 LLTRLSLLDLSDC 648 (1462)
Q Consensus 636 ~L~~L~~L~L~~~ 648 (1462)
+|++|++||++..
T Consensus 218 ~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 218 NLKKLRVLDISRD 230 (699)
T ss_pred cccCCCeeecccc
Confidence 6677777766653
No 186
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.30 E-value=0.00022 Score=86.12 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=35.4
Q ss_pred cccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 157 EAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..-+|-...++.+.-.+..++ .|+|+|.+|+|||||.+.+.....
T Consensus 10 s~~~g~~~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 10 SLAYGDRPLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred EEeeCCceeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCc
Confidence 333455556666666666777 999999999999999999999884
No 187
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.29 E-value=0.00028 Score=74.16 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=74.9
Q ss_pred HhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEe---c-------------------CCC------C--
Q 046345 172 AAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEV---T-------------------QTP------D-- 221 (1462)
Q Consensus 172 ~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~---~-------------------~~~------~-- 221 (1462)
.+..++ .|+|+|++|+|||||...+..-.++.. +.+++.- . +.+ +
T Consensus 27 ~i~~Ge--~vaI~GpSGSGKSTLLniig~ld~pt~---G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ 101 (226)
T COG1136 27 EIEAGE--FVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVL 101 (226)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHH
Confidence 344677 999999999999999999987664421 1112211 0 000 1
Q ss_pred ----------------HHHHHHHHHHHhCCCCC------CCcChHHHHHH-HHHHHHccCcEEEEEcCCcccccccccCC
Q 046345 222 ----------------HQKIQDKLAFDLGMEFG------LNENTFQKAYR-LCERLKKEKKVLIILDNIWTKLELDVVGI 278 (1462)
Q Consensus 222 ----------------~~~~~~~i~~~l~~~~~------~~~~~~~~~~~-l~~~l~~~k~~LlVlDdv~~~~~~~~~~~ 278 (1462)
..+....+++.++.... .+.+.-++++. +.+.+ -..+-+|+-|++....|.+.-..
T Consensus 102 ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL-~~~P~iilADEPTgnLD~~t~~~ 180 (226)
T COG1136 102 ENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL-INNPKIILADEPTGNLDSKTAKE 180 (226)
T ss_pred HHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH-hcCCCeEEeeCccccCChHHHHH
Confidence 12233444555555421 12233333333 33333 47888999999987655432211
Q ss_pred CCccccccccCCCCCcEEEEEecchhhhhhccCCCceEEcc
Q 046345 279 PYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNFLIE 319 (1462)
Q Consensus 279 ~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~~l~ 319 (1462)
.+..+.+. ....|..||+.||+..+|. .+.+++.+.
T Consensus 181 V~~ll~~~--~~~~g~tii~VTHd~~lA~---~~dr~i~l~ 216 (226)
T COG1136 181 VLELLREL--NKERGKTIIMVTHDPELAK---YADRVIELK 216 (226)
T ss_pred HHHHHHHH--HHhcCCEEEEEcCCHHHHH---hCCEEEEEe
Confidence 11111111 0235888999999999984 233444443
No 188
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.28 E-value=0.0008 Score=69.32 Aligned_cols=119 Identities=17% Similarity=0.195 Sum_probs=65.3
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC---CC---eEEEEEecCCC--CHHHHHHHHHHHhCCCCCCCcChH
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS---FD---KVVMAEVTQTP--DHQKIQDKLAFDLGMEFGLNENTF 244 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~---f~---~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 244 (1462)
+..++ +++|+|++|+|||||++.++........ ++ .+.++ .+.. ....+.+.+... . ...-+.-
T Consensus 24 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~-~~~LS~G 95 (166)
T cd03223 24 IKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---W-DDVLSGG 95 (166)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---C-CCCCCHH
Confidence 33566 9999999999999999999997643211 11 11121 2221 111333333211 1 1122222
Q ss_pred HHHH-HHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 245 QKAY-RLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 245 ~~~~-~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
++.. .+...+ -.++-++++|++.+..|.+........+.+ . +..||++|++....
T Consensus 96 ~~~rv~laral-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~----~--~~tiiivsh~~~~~ 151 (166)
T cd03223 96 EQQRLAFARLL-LHKPKFVFLDEATSALDEESEDRLYQLLKE----L--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECCccccCHHHHHHHHHHHHH----h--CCEEEEEeCChhHH
Confidence 3222 333444 367889999999988766543222221111 1 46799999987654
No 189
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.28 E-value=0.0039 Score=75.62 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=104.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
..+.|+|..|+|||.|++++++.......-..+++++. .++..++...+... ....+.+.+. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~--~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYR--E 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhh--c
Confidence 35899999999999999999998753222234566653 33444444332111 1112223332 2
Q ss_pred cEEEEEcCCccccc---cc-ccCCCCccccccccCCCCCcEEEEEecchhh--------hhhccCCCceEEccCCCHHHH
Q 046345 259 KVLIILDNIWTKLE---LD-VVGIPYGDVEKERKDDESGCTIILTSRNRDL--------LEKDMKSQKNFLIEVLSKDEA 326 (1462)
Q Consensus 259 ~~LlVlDdv~~~~~---~~-~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v--------~~~~~~~~~~~~l~~L~~~ea 326 (1462)
.=+||+||+..... |. .+...+. .+ ...|..|||||+.... ....+...-++++...+.+.-
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N----~l--~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFN----TL--HNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHH----HH--HhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 34899999975421 21 1111111 11 2235568888886311 112344566899999999999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHH------hcC--CHHHHHHHHHHH
Q 046345 327 LQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANAL------KSK--SLDFWKDALYRL 383 (1462)
Q Consensus 327 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l------~~~--~~~~w~~~~~~l 383 (1462)
.+++.+++.... -.-.++++.-|++++.+..-.+.-+-..| .++ +.+.-+.+++.+
T Consensus 452 ~aIL~kka~~r~-l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 452 IAILRKKAVQEQ-LNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 999998885322 22236788888888887655444332222 222 555555666554
No 190
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.27 E-value=0.003 Score=82.70 Aligned_cols=158 Identities=12% Similarity=0.209 Sum_probs=93.6
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCC----CeEEE-EEecCCCCHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSF----DKVVM-AEVTQTPDHQKIQDKL 229 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f----~~~~w-v~~~~~~~~~~~~~~i 229 (1462)
....++||++++++++..|......-+.++|++|+|||++|+.++++......+ ...+| ++++ .+.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~--- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI--- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh---
Confidence 345689999999999999887666677899999999999999999987432211 22222 2221 110
Q ss_pred HHHhCCCCCCCcChHHHHHHHHHHHHc-cCcEEEEEcCCccccc---------ccccCCCCccccccccCCCCCcEEEEE
Q 046345 230 AFDLGMEFGLNENTFQKAYRLCERLKK-EKKVLIILDNIWTKLE---------LDVVGIPYGDVEKERKDDESGCTIILT 299 (1462)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~---------~~~~~~~~~~l~~~~~~~~~gs~IlvT 299 (1462)
+ +... ....++++..++..+.. +++.+|++|++..... ...+..|.. ....-++|-+
T Consensus 242 a---~~~~--~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--------~~g~i~~Iga 308 (852)
T TIGR03346 242 A---GAKY--RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--------ARGELHCIGA 308 (852)
T ss_pred h---cchh--hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--------hcCceEEEEe
Confidence 0 0000 11223445555555533 4689999999975421 111111111 1123345545
Q ss_pred ecchhh---h---hhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 300 SRNRDL---L---EKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 300 tr~~~v---~---~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
|...+. . .........+.+...+.++..+++....
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 544332 1 1122344578999999999999997664
No 191
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.27 E-value=0.0018 Score=84.21 Aligned_cols=159 Identities=13% Similarity=0.197 Sum_probs=93.8
Q ss_pred CCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCC----C-eEEEEEecCCCCHHHHHHH
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSF----D-KVVMAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f----~-~~~wv~~~~~~~~~~~~~~ 228 (1462)
.....++||++++++++..|......-+.++|++|+|||++|+.++.....+... . .+++++++.-.
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~-------- 246 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV-------- 246 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh--------
Confidence 3446689999999999999887666678899999999999999999987432111 1 23333332210
Q ss_pred HHHHhCCCCCCCcChHHHHHHHHHHHH-ccCcEEEEEcCCccccc---------ccccCCCCccccccccCCCCCcEEEE
Q 046345 229 LAFDLGMEFGLNENTFQKAYRLCERLK-KEKKVLIILDNIWTKLE---------LDVVGIPYGDVEKERKDDESGCTIIL 298 (1462)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~---------~~~~~~~~~~l~~~~~~~~~gs~Ilv 298 (1462)
+ +... ....++++..++..+. .+++.+|++|++..... ...+..|.- ....-++|-
T Consensus 247 -a---g~~~--~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--------~~g~l~~Ig 312 (857)
T PRK10865 247 -A---GAKY--RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--------ARGELHCVG 312 (857)
T ss_pred -h---ccch--hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--------hcCCCeEEE
Confidence 0 0000 1112344555555543 35789999999875421 111111211 112345555
Q ss_pred Eecchhh---h---hhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 299 TSRNRDL---L---EKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 299 Ttr~~~v---~---~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
+|...+. . .........+.+...+.++..++++...
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5554432 1 1122334467788889999999887655
No 192
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.27 E-value=0.00084 Score=69.16 Aligned_cols=126 Identities=23% Similarity=0.237 Sum_probs=67.5
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHH---hhccC---CC--eEEEEEecCCCCHHHHHHHHHHHhCCCCC-CC----
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQV---MEDKS---FD--KVVMAEVTQTPDHQKIQDKLAFDLGMEFG-LN---- 240 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~---- 240 (1462)
..++ +++|+|++|+|||||.+.+..+. ..... +. .+.|+ .+ .+.+..++.... ..
T Consensus 19 ~~G~--~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~ 86 (176)
T cd03238 19 PLNV--LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLS 86 (176)
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcC
Confidence 3455 99999999999999999986421 00000 00 12222 11 345666665321 11
Q ss_pred -cChHHHH-HHHHHHHHccC--cEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceE
Q 046345 241 -ENTFQKA-YRLCERLKKEK--KVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNF 316 (1462)
Q Consensus 241 -~~~~~~~-~~l~~~l~~~k--~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~ 316 (1462)
-+.-++. -.+...+. .+ +-++++|++.+..|..........+.+. ...|..||++||+..... .+.+.+
T Consensus 87 ~LSgGq~qrl~laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~---~~~g~tvIivSH~~~~~~---~~d~i~ 159 (176)
T cd03238 87 TLSGGELQRVKLASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGL---IDLGNTVILIEHNLDVLS---SADWII 159 (176)
T ss_pred cCCHHHHHHHHHHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHHH---hCCEEE
Confidence 1112222 22333332 45 7899999998876654432222222211 224778999999987652 244455
Q ss_pred Ec
Q 046345 317 LI 318 (1462)
Q Consensus 317 ~l 318 (1462)
.+
T Consensus 160 ~l 161 (176)
T cd03238 160 DF 161 (176)
T ss_pred EE
Confidence 44
No 193
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0002 Score=76.57 Aligned_cols=140 Identities=19% Similarity=0.275 Sum_probs=81.0
Q ss_pred chhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc---CCCeEEEEEecCC----------------C
Q 046345 160 DSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK---SFDKVVMAEVTQT----------------P 220 (1462)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~----------------~ 220 (1462)
+|+-..+++|.-.+.+++ ++++.|++|+|||||.+.++.-..++. .|+...|.+++.. |
T Consensus 12 ~~~~~a~~di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 12 FGAFGALDDISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred cccccccccceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 344444455555566777 999999999999999999999886543 4566777777652 1
Q ss_pred CHHHHHHHHHHHhCCCCC----------------------------CCcChHHHHHHHHHHHHccCcEEEEEcCCccccc
Q 046345 221 DHQKIQDKLAFDLGMEFG----------------------------LNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE 272 (1462)
Q Consensus 221 ~~~~~~~~i~~~l~~~~~----------------------------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~ 272 (1462)
....+.+.|+-.+..... .+-+.-++.+....+...-.+-+|.||++....|
T Consensus 90 ~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALD 169 (345)
T COG1118 90 PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 169 (345)
T ss_pred ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhh
Confidence 223566666655533311 0111112222222222234555999999987644
Q ss_pred ccc---cCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 273 LDV---VGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 273 ~~~---~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
-.. +...+..+. ...|...+++|++.+.+
T Consensus 170 a~vr~~lr~wLr~~~-----~~~~~ttvfVTHD~eea 201 (345)
T COG1118 170 AKVRKELRRWLRKLH-----DRLGVTTVFVTHDQEEA 201 (345)
T ss_pred HHHHHHHHHHHHHHH-----HhhCceEEEEeCCHHHH
Confidence 211 111111111 23477788999987665
No 194
>CHL00176 ftsH cell division protein; Validated
Probab=97.26 E-value=0.0022 Score=79.69 Aligned_cols=156 Identities=14% Similarity=0.239 Sum_probs=86.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
+-+.++|++|+|||++|+++++... .. |+.++. .++.... .+ ........+++......
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~----s~f~~~~---~g-------~~~~~vr~lF~~A~~~~ 275 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISG----SEFVEMF---VG-------VGAARVRDLFKKAKENS 275 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccH----HHHHHHh---hh-------hhHHHHHHHHHHHhcCC
Confidence 4689999999999999999998762 22 222221 1111110 00 11223444555555578
Q ss_pred cEEEEEcCCccccccc---------ccCCCCcccccccc--CCCCCcEEEEEecchhhhhhcc----CCCceEEccCCCH
Q 046345 259 KVLIILDNIWTKLELD---------VVGIPYGDVEKERK--DDESGCTIILTSRNRDLLEKDM----KSQKNFLIEVLSK 323 (1462)
Q Consensus 259 ~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~--~~~~gs~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~ 323 (1462)
+.+|++||++....-. .....+..++...- ....+..||.||...+...... .-...+.+...+.
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 8999999996431100 00000011110000 1234566777777655442221 1235789999999
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC
Q 046345 324 DEALQLFECIVGDSAKTSAIQPIADEIVERCEGL 357 (1462)
Q Consensus 324 ~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 357 (1462)
++-.++++.++..... ........+++.+.|.
T Consensus 356 ~~R~~IL~~~l~~~~~--~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 356 EGRLDILKVHARNKKL--SPDVSLELIARRTPGF 387 (638)
T ss_pred HHHHHHHHHHHhhccc--chhHHHHHHHhcCCCC
Confidence 9999999988754221 1233456788888773
No 195
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.00042 Score=69.40 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=44.6
Q ss_pred hhcCCcceEEEecCCCCCCCCcccCC-CCcCcEEEecCcccCC---ccccccccCCcEEEecCCCCCccch----hhccc
Q 046345 566 FEGTEGLKVLDFTGIHFSSLPSSLGR-LTSLQTLCLHWCELED---IAIVGQLKKLEILSFRDSDIKELPL----EIGLL 637 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~lp~~i~~-L~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~i~~lp~----~i~~L 637 (1462)
|..+..|..|.|.+|.|+.+-..+.. +++|..|.|.+|+|.. ...+..++.|++|.+-+|.+..-+. -+.++
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 45555566666666666555333322 3346666666655443 3445555566666666665554432 24566
Q ss_pred cccCEEccCC
Q 046345 638 TRLSLLDLSD 647 (1462)
Q Consensus 638 ~~L~~L~L~~ 647 (1462)
++|+.||..+
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 6666666554
No 196
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.24 E-value=0.00037 Score=75.47 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=33.1
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..+....++....++.+.-.+..++ +++|+|.+|+|||||++.++....
T Consensus 14 ~~~l~~~~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 14 AHALAFSRNEEPVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EeeEEEecCCceeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 3333333332234444444444666 999999999999999999998764
No 197
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.0053 Score=73.41 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=89.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
..+.|+|+.|+|||+|++++++..... ...+++++. ..+...+...+... . .....+.+ ..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~------~---~~~f~~~~--~~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG------E---MQRFRQFY--RN 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc------h---HHHHHHHc--cc
Confidence 468899999999999999999988532 233555542 33444444443211 1 11122222 24
Q ss_pred cEEEEEcCCcccccc----cccCCCCccccccccCCCCCcEEEEEecch-hhh-------hhccCCCceEEccCCCHHHH
Q 046345 259 KVLIILDNIWTKLEL----DVVGIPYGDVEKERKDDESGCTIILTSRNR-DLL-------EKDMKSQKNFLIEVLSKDEA 326 (1462)
Q Consensus 259 ~~LlVlDdv~~~~~~----~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~-~v~-------~~~~~~~~~~~l~~L~~~ea 326 (1462)
.-+|++||+...... +.+...+..+ ...|..||+||... ... ..+...+..+++.+++.++-
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l------~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSL------HTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHH------HHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHH
Confidence 458999998654221 1111111111 12355788888653 111 11233446899999999999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 327 LQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 327 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
..++.+.+.... ..-.+++..-|++...+.-
T Consensus 277 ~~iL~~k~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 277 RSFLERKAEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 999998874321 2223567777888777654
No 198
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.23 E-value=0.02 Score=65.71 Aligned_cols=193 Identities=19% Similarity=0.248 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHhccCCceEEEEEecCCCcHHHHH-HHHHHHHhhccCCCeEEEEEecCC---CCHHHHHHHHHHHhCCCC
Q 046345 162 RMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLV-KQVAKQVMEDKSFDKVVMAEVTQT---PDHQKIQDKLAFDLGMEF 237 (1462)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~ 237 (1462)
|.+.+++|-.||....-..|.|.||-|+||+.|+ .++.++.+ .++.+++.+- .+-..+.+.++.++|..+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999999877789999999999999999 66665542 2667776542 334456666666654221
Q ss_pred ------------------------CCCcChHHHHHHHHH----HHHc-------------------------cCcEEEEE
Q 046345 238 ------------------------GLNENTFQKAYRLCE----RLKK-------------------------EKKVLIIL 264 (1462)
Q Consensus 238 ------------------------~~~~~~~~~~~~l~~----~l~~-------------------------~k~~LlVl 264 (1462)
+...+.+..+..+++ .|++ .++=++|+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 222333322222221 1110 12448999
Q ss_pred cCCccc-----------ccccccCCCCccccccccCCCCCcEEEEEecchhhhh---hcc--CCCceEEccCCCHHHHHH
Q 046345 265 DNIWTK-----------LELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE---KDM--KSQKNFLIEVLSKDEALQ 328 (1462)
Q Consensus 265 Ddv~~~-----------~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~---~~~--~~~~~~~l~~L~~~ea~~ 328 (1462)
|+.... .+|..... ..+-.+||++|-+..... ..+ ...+.+.|...+++.|..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv-----------~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV-----------QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH-----------hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 998543 23433211 345668999998765541 222 345689999999999999
Q ss_pred HHHHHhCCCCCC-------------------CCchHHHHHHHHHccCCchHHHHHHHHHhcC
Q 046345 329 LFECIVGDSAKT-------------------SAIQPIADEIVERCEGLPVALSTIANALKSK 371 (1462)
Q Consensus 329 lf~~~~~~~~~~-------------------~~~~~~~~~i~~~~~glPlai~~~~~~l~~~ 371 (1462)
+...+....... ....+-....++.+||=-.-+..+++.++..
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 999888532110 1234456677888999888888888888866
No 199
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00015 Score=76.08 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=79.4
Q ss_pred ccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC----------------------CCeEEEEE
Q 046345 158 AFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS----------------------FDKVVMAE 215 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----------------------f~~~~wv~ 215 (1462)
..+|....++.+.-.+.+++ .|+|+|++|+|||||.+.++.-...... +..--|-+
T Consensus 11 ~~f~~~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 11 KSFGGVEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred EEeCceEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhh
Confidence 33444555666666666788 9999999999999999999987743211 11122333
Q ss_pred ecCCC------------CHHHHHHHHHHHhCCCCCC-----CcChHHHHH-HHHHHHHccCcEEEEEcCCcccccccccC
Q 046345 216 VTQTP------------DHQKIQDKLAFDLGMEFGL-----NENTFQKAY-RLCERLKKEKKVLIILDNIWTKLELDVVG 277 (1462)
Q Consensus 216 ~~~~~------------~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~-~l~~~l~~~k~~LlVlDdv~~~~~~~~~~ 277 (1462)
+-++. .......++++.+|...-. +-+.-.+++ .+.+.+ ..++-+|++|++....|--.-.
T Consensus 89 v~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL-~~~P~lLLlDEPFgALDalTR~ 167 (248)
T COG1116 89 VLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARAL-ATRPKLLLLDEPFGALDALTRE 167 (248)
T ss_pred HHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHH-hcCCCEEEEcCCcchhhHHHHH
Confidence 32221 1223455555555554321 112222222 233444 3677899999998764421110
Q ss_pred CCCccccccccCCCCCcEEEEEecchhhh
Q 046345 278 IPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 278 ~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.....+.+. |...+..|++.||+-+.|
T Consensus 168 ~lq~~l~~l--w~~~~~TvllVTHdi~EA 194 (248)
T COG1116 168 ELQDELLRL--WEETRKTVLLVTHDVDEA 194 (248)
T ss_pred HHHHHHHHH--HHhhCCEEEEEeCCHHHH
Confidence 000000000 244567899999988776
No 200
>PRK08181 transposase; Validated
Probab=97.23 E-value=0.005 Score=67.95 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=50.0
Q ss_pred HHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHH
Q 046345 168 DVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKA 247 (1462)
Q Consensus 168 ~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 247 (1462)
....|+..+. -+.++|++|+|||.||..+++..... ...++|++ ..++...+..... .. ..
T Consensus 98 ~~~~~~~~~~--nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~-----~~----~~ 158 (269)
T PRK08181 98 AGDSWLAKGA--NLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR-----EL----QL 158 (269)
T ss_pred HHHHHHhcCc--eEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh-----CC----cH
Confidence 3335665444 68999999999999999999987532 23455554 3445555543211 11 11
Q ss_pred HHHHHHHHccCcEEEEEcCCccc
Q 046345 248 YRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 248 ~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
......+ .+.=|||+||+...
T Consensus 159 ~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 159 ESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred HHHHHHH--hcCCEEEEeccccc
Confidence 2233444 24459999999643
No 201
>PRK06620 hypothetical protein; Validated
Probab=97.23 E-value=0.0011 Score=70.88 Aligned_cols=135 Identities=19% Similarity=0.058 Sum_probs=78.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
+.+.|+|++|+|||+|++.+++... . .++. .... . . +.. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------------~-~-------~~~--~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------------N-E-------EIL--EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------------c-h-------hHH--hc
Confidence 5689999999999999998777552 1 1111 0000 0 0 011 12
Q ss_pred cEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh------hhccCCCceEEccCCCHHHHHHHHHH
Q 046345 259 KVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL------EKDMKSQKNFLIEVLSKDEALQLFEC 332 (1462)
Q Consensus 259 ~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~------~~~~~~~~~~~l~~L~~~ea~~lf~~ 332 (1462)
.-+|++||+....+. .+...+.. + ...|..||+|++..... ..+....-++++++++.++-..++++
T Consensus 86 ~d~lliDdi~~~~~~-~lf~l~N~----~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 86 YNAFIIEDIENWQEP-ALLHIFNI----I--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred CCEEEEeccccchHH-HHHHHHHH----H--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 347888999743211 11111111 1 23567899998854331 12334455899999999998888887
Q ss_pred HhCCCCCCCCchHHHHHHHHHccCCchH
Q 046345 333 IVGDSAKTSAIQPIADEIVERCEGLPVA 360 (1462)
Q Consensus 333 ~~~~~~~~~~~~~~~~~i~~~~~glPla 360 (1462)
.+... .-.-.+++.+-|++++.|--..
T Consensus 159 ~~~~~-~l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 159 HFSIS-SVTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHHHc-CCCCCHHHHHHHHHHccCCHHH
Confidence 76421 1122356777787777764443
No 202
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.22 E-value=0.00053 Score=67.92 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=44.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC-c
Q 046345 181 IGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK-K 259 (1462)
Q Consensus 181 v~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~ 259 (1462)
|.|+|++|+||||+|+.+++... . ..+.++.+...+. ......+.+..+++...... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~---~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--F---PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--S---EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--c---ccccccccccccc----------------cccccccccccccccccccccc
Confidence 57999999999999999999983 1 2344443321100 12223444555555554444 8
Q ss_pred EEEEEcCCccc
Q 046345 260 VLIILDNIWTK 270 (1462)
Q Consensus 260 ~LlVlDdv~~~ 270 (1462)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999765
No 203
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.028 Score=59.27 Aligned_cols=194 Identities=19% Similarity=0.216 Sum_probs=109.7
Q ss_pred HHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEec-CCCCHHHHHHHHHHHhCCCCCCCc-
Q 046345 164 KVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVT-QTPDHQKIQDKLAFDLGMEFGLNE- 241 (1462)
Q Consensus 164 ~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~- 241 (1462)
+.+..+...+. ++.++++++|.-|+|||.+.++....... +.+.-+.+. ...+...+...|...+........
T Consensus 38 e~l~~l~~~i~-d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 38 EALLMLHAAIA-DGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred HHHHHHHHHHh-cCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 34444444443 34469999999999999999966665532 122223333 446777888888887776332111
Q ss_pred ChH-HHHHHHHHHHHccCc-EEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecch-------hhhhhcc
Q 046345 242 NTF-QKAYRLCERLKKEKK-VLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNR-------DLLEKDM 310 (1462)
Q Consensus 242 ~~~-~~~~~l~~~l~~~k~-~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~-------~v~~~~~ 310 (1462)
... ...+.+.+..++++| ..+++||.... ...+.++.......+ ...--+|+..-+-+ .+.....
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~----~~~~l~ivL~Gqp~L~~~lr~~~l~e~~ 188 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEED----SSKLLSIVLIGQPKLRPRLRLPVLRELE 188 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhccc----ccCceeeeecCCcccchhhchHHHHhhh
Confidence 122 233344455556777 99999998654 222222111000000 11111233322211 1111111
Q ss_pred CCCce-EEccCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHccCCchHHHHHHH
Q 046345 311 KSQKN-FLIEVLSKDEALQLFECIVGDSAKTS--AIQPIADEIVERCEGLPVALSTIAN 366 (1462)
Q Consensus 311 ~~~~~-~~l~~L~~~ea~~lf~~~~~~~~~~~--~~~~~~~~i~~~~~glPlai~~~~~ 366 (1462)
.+... |++.|++.++...+++.+.+....++ -..+....|.++..|.|.+|..++.
T Consensus 189 ~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 189 QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 12223 99999999999999988874332222 2356778899999999999987764
No 204
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.00059 Score=71.01 Aligned_cols=122 Identities=20% Similarity=0.187 Sum_probs=64.8
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CC-------
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG-----LN------- 240 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~------- 240 (1462)
+..++ +++|+|++|+|||||++.++..... ..+.+++.-....+.. ..+...++.-.. ..
T Consensus 23 i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~ 94 (173)
T cd03230 23 VEKGE--IYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENL 94 (173)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHh
Confidence 33555 9999999999999999999987632 2333443211100000 011111110000 00
Q ss_pred -cChHHHHH-HHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 241 -ENTFQKAY-RLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 241 -~~~~~~~~-~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
-+.-++.. .+...+ ..++-++++|++....|..........+.+. ...|..||++|++...+
T Consensus 95 ~LS~G~~qrv~laral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~~g~tiii~th~~~~~ 158 (173)
T cd03230 95 KLSGGMKQRLALAQAL-LHDPELLILDEPTSGLDPESRREFWELLREL---KKEGKTILLSSHILEEA 158 (173)
T ss_pred hcCHHHHHHHHHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHH---HHCCCEEEEECCCHHHH
Confidence 11112222 233333 3688899999999887655433222222221 22367899999988765
No 205
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.18 E-value=0.00061 Score=70.90 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=63.9
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC--CCCHHHHHHHHHHHhCCCCCCC-------cChH
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ--TPDHQKIQDKLAFDLGMEFGLN-------ENTF 244 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 244 (1462)
..++ +++|+|++|+|||||++.++..... ..+.+++.-.. ..........+........-.. -+.-
T Consensus 26 ~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 26 EPGE--SLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCCC--EEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHH
Confidence 3556 9999999999999999999987642 22333322111 1111111111110000000000 1111
Q ss_pred HHH-HHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 245 QKA-YRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 245 ~~~-~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
++. -.+...+ -.++-++++|++.+..|..........+.+. ...|..||++|++....
T Consensus 101 ~~qrv~la~al-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 101 QRQRLGLARAL-YGNPRILVLDEPNSHLDVEGERALNQAIAAL---KAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHH-hcCCCEEEEECCccccCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHH
Confidence 222 2233334 3577799999999886654432222221111 22467899999988765
No 206
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00068 Score=67.85 Aligned_cols=38 Identities=37% Similarity=0.621 Sum_probs=29.3
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhc
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 205 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~ 205 (1462)
++++.....+++ +++|.|++|+||||+.+.++.-..+.
T Consensus 18 vrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 18 VRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred hhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCC
Confidence 344443333555 99999999999999999999988654
No 207
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00035 Score=72.72 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=80.4
Q ss_pred cCCccccchhHH----HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc------------------CCC-
Q 046345 153 VKDYEAFDSRMK----VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK------------------SFD- 209 (1462)
Q Consensus 153 ~~~~~~~~gr~~----~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~------------------~f~- 209 (1462)
.++....+++.. .++.+.-.+..++ +++|+|.+|+|||||++.++.-.+... .+.
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~ 83 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRP 83 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccc
Confidence 344444555554 4455544445677 999999999999999999998774321 011
Q ss_pred -eEEEEEecCCCC----HHHH----------------HHHHHHHhCCCCC------CCcChHHHHHHHHHHHHccCcEEE
Q 046345 210 -KVVMAEVTQTPD----HQKI----------------QDKLAFDLGMEFG------LNENTFQKAYRLCERLKKEKKVLI 262 (1462)
Q Consensus 210 -~~~wv~~~~~~~----~~~~----------------~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~~k~~Ll 262 (1462)
..+|-+-....+ +.++ ..+++++++.+.. .+-+.-++++....+-..-++-+|
T Consensus 84 VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklL 163 (252)
T COG1124 84 VQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLL 163 (252)
T ss_pred eeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEE
Confidence 123333222222 1111 3344455554432 112223333333332224788899
Q ss_pred EEcCCccccccc---ccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 263 ILDNIWTKLELD---VVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 263 VlDdv~~~~~~~---~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
|+|++.+..|.- .+...+.++. ...+-.+|+.|++..++
T Consensus 164 IlDEptSaLD~siQa~IlnlL~~l~-----~~~~lt~l~IsHdl~~v 205 (252)
T COG1124 164 ILDEPTSALDVSVQAQILNLLLELK-----KERGLTYLFISHDLALV 205 (252)
T ss_pred EecCchhhhcHHHHHHHHHHHHHHH-----HhcCceEEEEeCcHHHH
Confidence 999998775421 1111111111 34577899999998776
No 208
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.14 E-value=0.0032 Score=72.28 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 163 MKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
...+..+...+..++ +++|+|++|+||||||+.+..-+..
T Consensus 349 ~pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w~p 388 (580)
T COG4618 349 KPILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIWPP 388 (580)
T ss_pred CcceecceeEecCCc--eEEEECCCCccHHHHHHHHHccccc
Confidence 345666776677788 9999999999999999999988743
No 209
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0012 Score=68.85 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=38.0
Q ss_pred ccCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 152 QVKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
..++....++-+..+..|.=.+..++ ..+|+|++|+|||||.+.+..+...
T Consensus 33 ~l~~v~v~r~gk~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 33 ELKNVSVRRNGKKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred EecceEEEECCEeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCC
Confidence 34555555555566666665555666 8899999999999999999988743
No 210
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.13 E-value=0.01 Score=62.96 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=37.6
Q ss_pred ccccchhHHHHHHHHHH----hccCCceEEEEEecCCCcHHHHHHHHHHHHhhc
Q 046345 156 YEAFDSRMKVFQDVVEA----AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 205 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~----l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~ 205 (1462)
...++|-+...+.+++- +......-+.++|..|+|||++++++.+....+
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 45567877776666543 334455678899999999999999999998643
No 211
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0012 Score=70.60 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=79.5
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC-----CCCHHHHHHHHHHHhCCCCCC--
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ-----TPDHQKIQDKLAFDLGMEFGL-- 239 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~-- 239 (1462)
+.+...+..++ +++|||.+|+||||+++.+.+-.... .+.++..-.+ .....+-..+++..+|.....
T Consensus 30 d~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ 104 (268)
T COG4608 30 DGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLY 104 (268)
T ss_pred cceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhh
Confidence 33443444667 99999999999999999999987432 2333333211 222334456666666644321
Q ss_pred ----CcChHHHHHHHHHHHHccCcEEEEEcCCcccccc---cccCCCCccccccccCCCCCcEEEEEecchhhhh
Q 046345 240 ----NENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL---DVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE 307 (1462)
Q Consensus 240 ----~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~ 307 (1462)
+-+.-++++....+...-++-++|.|++.+..|. ..+...+.++. ...|...++.|++-.++.
T Consensus 105 ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-----~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 105 RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-----EELGLTYLFISHDLSVVR 174 (268)
T ss_pred cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-----HHhCCeEEEEEEEHHhhh
Confidence 2233344444444444578999999999877554 22222222221 335778999999998884
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.0012 Score=66.54 Aligned_cols=90 Identities=21% Similarity=0.170 Sum_probs=52.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
+.+.|+|++|+||||+|+.++....... ..++++..+........... ..... ......................+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVG-GKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhh-ccCCCCCHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999885322 24566655544322221111 01111 11112223334445555554334
Q ss_pred cEEEEEcCCccccc
Q 046345 259 KVLIILDNIWTKLE 272 (1462)
Q Consensus 259 ~~LlVlDdv~~~~~ 272 (1462)
..++++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 58999999987644
No 213
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.11 E-value=0.007 Score=77.54 Aligned_cols=163 Identities=20% Similarity=0.160 Sum_probs=88.1
Q ss_pred ccchhHHHHHHHHHHhcc------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAKD------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 231 (1462)
..+|.++..++|.+++.. ....++.++|++|+||||+|+.+++... ..| +-++++...+...+...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~---~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKY---VRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE---EEEEcCCCCCHHHhccchhc
Confidence 467999999999988761 3445899999999999999999998763 233 22344444343332211111
Q ss_pred HhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccc---------------cCCCCCcEE
Q 046345 232 DLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKER---------------KDDESGCTI 296 (1462)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~---------------~~~~~gs~I 296 (1462)
..+.. .....+.+... ....-++++|+++....-. -+.|...+.+.+ ...-.+..+
T Consensus 398 ~~g~~-------~G~~~~~l~~~-~~~~~villDEidk~~~~~-~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 398 YIGSM-------PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDM-RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred cCCCC-------CcHHHHHHHhc-CCCCCEEEEEChhhccccc-CCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 11111 01111111111 1234478999996542100 000000111000 001134445
Q ss_pred EEEecchhhhhhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 297 ILTSRNRDLLEKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 297 lvTtr~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
|.|+....+.....++...+++.+++.+|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55665444333334556689999999999888887765
No 214
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.012 Score=67.69 Aligned_cols=166 Identities=12% Similarity=0.083 Sum_probs=100.2
Q ss_pred HHHHHHHHHhccCC-ceEEEEEecCCCcHHHHHHHHHHHHhhc--------------------cCCCeEEEEEecCCCCH
Q 046345 164 KVFQDVVEAAKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVMED--------------------KSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 164 ~~~~~l~~~l~~~~-~~vv~I~G~~GvGKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~~~~~ 222 (1462)
...+++...+.+++ .+.+.+.|+.|+||+++|..++....-. .|.|. .++.-...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~--- 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG--- 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc---
Confidence 44566777777654 4577899999999999999999887321 12222 11110000
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEE
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTI 296 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~I 296 (1462)
...-..+.++.+.+.+. .+++-++|+|+++... ...++...+.+ ...++.+
T Consensus 85 ----------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~f 141 (334)
T PRK07993 85 ----------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-------PPENTWF 141 (334)
T ss_pred ----------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-------CCCCeEE
Confidence 00112334444444442 3677799999987652 22222222222 4456777
Q ss_pred EEEecchh-hhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHH
Q 046345 297 ILTSRNRD-LLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 297 lvTtr~~~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 362 (1462)
|.+|.+.+ +..+...+...+.+.+++.+++.+.+....+ ...+.+..+++.++|.|..+.
T Consensus 142 iL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 142 FLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred EEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC------CCHHHHHHHHHHcCCCHHHHH
Confidence 77777654 4333344556889999999999888865432 123447788999999996443
No 215
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.013 Score=69.56 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=50.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-PDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
++++|+|++|+||||++..++.....+.....+..++.... ......+....+.++...... .........++.+ .
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a-~d~~~L~~aL~~l--~ 427 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEA-DSAESLLDLLERL--R 427 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEec-CcHHHHHHHHHHh--c
Confidence 49999999999999999999987653332344555554321 122233333344444433311 2222333444444 2
Q ss_pred CcEEEEEcCCcc
Q 046345 258 KKVLIILDNIWT 269 (1462)
Q Consensus 258 k~~LlVlDdv~~ 269 (1462)
+.-+||+|....
T Consensus 428 ~~DLVLIDTaG~ 439 (559)
T PRK12727 428 DYKLVLIDTAGM 439 (559)
T ss_pred cCCEEEecCCCc
Confidence 345888998753
No 216
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.08 E-value=0.0012 Score=83.91 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=34.8
Q ss_pred ccCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 152 QVKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
...+....+|....++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 321 ~~~~l~~~~~~~~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~ 370 (635)
T PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQ 370 (635)
T ss_pred EEeeeEEEECCeEEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCC
Confidence 34444444454334455444444666 999999999999999999998753
No 217
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.08 E-value=0.00041 Score=79.23 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=35.2
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..+....+|....++.+.-.+..++ +++|+|++|+|||||.+.++....
T Consensus 10 i~~l~k~~~~~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 10 FRNVEKRYGDKLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred EEeEEEEECCeEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444444454345555555555666 999999999999999999998764
No 218
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.08 E-value=0.00037 Score=78.71 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=81.6
Q ss_pred CCccccch-hHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC----CC------------eEEEEEe
Q 046345 154 KDYEAFDS-RMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS----FD------------KVVMAEV 216 (1462)
Q Consensus 154 ~~~~~~~g-r~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~------------~~~wv~~ 216 (1462)
.+....+| ....++.+.-.+..++ ++++.|++|+|||||.+.+.+..++... +. .+.++.-
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~ 85 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQ 85 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEcc
Confidence 44455566 4566666666666676 9999999999999999999998854211 00 1111111
Q ss_pred cC----CCCHHH------------------HHHHHHHHhCCCCCCC-----cCh-HHHHHHHHHHHHccCcEEEEEcCCc
Q 046345 217 TQ----TPDHQK------------------IQDKLAFDLGMEFGLN-----ENT-FQKAYRLCERLKKEKKVLIILDNIW 268 (1462)
Q Consensus 217 ~~----~~~~~~------------------~~~~i~~~l~~~~~~~-----~~~-~~~~~~l~~~l~~~k~~LlVlDdv~ 268 (1462)
.. ..++.+ ...++++.++...... -+. ..+.-.+...+. .++-++|||++.
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~-~~P~lliLDEPt 164 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL-HDPELLILDEPT 164 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh-cCCCEEEECCCC
Confidence 11 112222 2333444455443110 011 112222333443 677899999999
Q ss_pred ccccccccCCCCccccccccCCCCC-cEEEEEecchhhhh
Q 046345 269 TKLELDVVGIPYGDVEKERKDDESG-CTIILTSRNRDLLE 307 (1462)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~~~~~~~g-s~IlvTtr~~~v~~ 307 (1462)
+..|..........+.+. ...| ..|++|||....+.
T Consensus 165 ~GLDp~~~~~~~~~l~~l---~~~g~~tvlissH~l~e~~ 201 (293)
T COG1131 165 SGLDPESRREIWELLREL---AKEGGVTILLSTHILEEAE 201 (293)
T ss_pred cCCCHHHHHHHHHHHHHH---HhCCCcEEEEeCCcHHHHH
Confidence 886654332221111111 2234 68999999887763
No 219
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.021 Score=62.86 Aligned_cols=203 Identities=18% Similarity=0.270 Sum_probs=115.4
Q ss_pred CCccccchhHHHHHHHHHHhcc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCC
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTP 220 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 220 (1462)
..+..+-|-++.+++|.+.+.- ..++=|.++|++|.|||-||++|+++-. ..| +.+...
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--AtF-----IrvvgS- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--ATF-----IRVVGS- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ceE-----EEeccH-
Confidence 3345566788888888887651 3456788999999999999999999873 333 333221
Q ss_pred CHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--ccc-----------cCCCCccccccc
Q 046345 221 DHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--LDV-----------VGIPYGDVEKER 287 (1462)
Q Consensus 221 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~-----------~~~~~~~l~~~~ 287 (1462)
++.+..+ | .....++.+++.-+...+.+|.+|+++.... .+. +...+..+ +-|
T Consensus 220 ---ElVqKYi---G-------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql-DGF 285 (406)
T COG1222 220 ---ELVQKYI---G-------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL-DGF 285 (406)
T ss_pred ---HHHHHHh---c-------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc-cCC
Confidence 1211111 1 1234555666655567889999999874310 000 00000000 000
Q ss_pred cCCCCCcEEEEEecchhhhhhc-cC---CCceEEccCCCHHHHHHHHHHHhCCC--CCCCCchHHHHHHHHHccCCc---
Q 046345 288 KDDESGCTIILTSRNRDLLEKD-MK---SQKNFLIEVLSKDEALQLFECIVGDS--AKTSAIQPIADEIVERCEGLP--- 358 (1462)
Q Consensus 288 ~~~~~gs~IlvTtr~~~v~~~~-~~---~~~~~~l~~L~~~ea~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~glP--- 358 (1462)
....+.|||..|...+....+ .. -.+.+++..-+.+.-.++|+=++..- ...-+++ .+++.+.|.-
T Consensus 286 -D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAd 360 (406)
T COG1222 286 -DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGAD 360 (406)
T ss_pred -CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHH
Confidence 123467999988877766222 12 23578888666777777777666422 2233333 4666666654
Q ss_pred -hHHHHHHHHHh--c-C---CHHHHHHHHHHH
Q 046345 359 -VALSTIANALK--S-K---SLDFWKDALYRL 383 (1462)
Q Consensus 359 -lai~~~~~~l~--~-~---~~~~w~~~~~~l 383 (1462)
.||.+=|++++ . + +.+++....++.
T Consensus 361 lkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 361 LKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 44555566554 1 1 445555555443
No 220
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00056 Score=71.54 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=63.1
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCC----HHHHHHHHHHHhCCCCC--CC------
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPD----HQKIQDKLAFDLGMEFG--LN------ 240 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~----~~~~~~~i~~~l~~~~~--~~------ 240 (1462)
+..++ +++|+|++|+|||||++.++..... ..+.+.+.-..... .......+.- +..... ..
T Consensus 23 i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~-~~q~~~~~~~~t~~~~ 96 (178)
T cd03229 23 IEAGE--IVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLTDLEDELPPLRRRIGM-VFQDFALFPHLTVLEN 96 (178)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccchhHHHHhhcEEE-EecCCccCCCCCHHHh
Confidence 34566 9999999999999999999986532 23333332111000 1111111100 000000 00
Q ss_pred ----cChHHHH-HHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 241 ----ENTFQKA-YRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 241 ----~~~~~~~-~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
-+.-++. -.+...+ ..++-++++|++....|..........+.+. . ...|..||++|++....
T Consensus 97 l~~~lS~G~~qr~~la~al-~~~p~llilDEP~~~LD~~~~~~l~~~l~~~-~-~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 97 IALGLSGGQQQRVALARAL-AMDPDVLLLDEPTSALDPITRREVRALLKSL-Q-AQLGITVVLVTHDLDEA 164 (178)
T ss_pred eeecCCHHHHHHHHHHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-H-HhcCCEEEEEeCCHHHH
Confidence 1111222 2233334 3677899999998876654332211111111 1 11267799999987765
No 221
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.07 E-value=0.001 Score=69.58 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=64.0
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCC--------------CC
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEF--------------GL 239 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------------~~ 239 (1462)
..++ +++|+|++|+|||||++.++...... .+.+++.-. +.......+...++.-. ..
T Consensus 26 ~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~ 97 (178)
T cd03247 26 KQGE--KIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGR 97 (178)
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcc
Confidence 3556 99999999999999999999976432 223333211 11111111111111000 00
Q ss_pred CcChHHHHH-HHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 240 NENTFQKAY-RLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 240 ~~~~~~~~~-~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.-+.-++.. .+...+ -.++-++++|++.+..|..........+.+. . .+..||++|++....
T Consensus 98 ~LS~G~~qrv~laral-~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~~ 160 (178)
T cd03247 98 RFSGGERQRLALARIL-LQDAPIVLLDEPTVGLDPITERQLLSLIFEV---L-KDKTLIWITHHLTGI 160 (178)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHH---c-CCCEEEEEecCHHHH
Confidence 111122222 233334 3678899999999886654432222222111 2 367799999988776
No 222
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0086 Score=68.90 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=54.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ-TPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
.+++++|++|+||||++..++.....+.....+..++... .....+-+...++.++.+........+ .......+ .
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~-l~~~l~~l--~ 214 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-LQLALAEL--R 214 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc-HHHHHHHh--c
Confidence 4999999999999999999999874332223556665433 234455666667777766542222222 22333444 2
Q ss_pred CcEEEEEcCCcc
Q 046345 258 KKVLIILDNIWT 269 (1462)
Q Consensus 258 k~~LlVlDdv~~ 269 (1462)
+.-++++|.+..
T Consensus 215 ~~DlVLIDTaG~ 226 (374)
T PRK14722 215 NKHMVLIDTIGM 226 (374)
T ss_pred CCCEEEEcCCCC
Confidence 345677999853
No 223
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.06 E-value=0.00057 Score=74.08 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=28.2
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 15 l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 15 LEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred eecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCC
Confidence 344444444666 999999999999999999998764
No 224
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.05 E-value=0.0011 Score=83.21 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=40.5
Q ss_pred CccccCCccccchhH--HHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 149 GHIQVKDYEAFDSRM--KVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 149 ~~~~~~~~~~~~gr~--~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
+....++...-|+.+ ..++.+.-.+..++ .|+|+|.+|+|||||++.+.+-..+
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344555555555655 46677666566777 9999999999999999999988754
No 225
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.04 E-value=0.0036 Score=75.19 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=85.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
.+-|.++|++|+|||.+|+.+++... ..| +-++.+. +. +... .........+++.....
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~------l~-------~~~v---Gese~~l~~~f~~A~~~ 317 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK------LF-------GGIV---GESESRMRQMIRIAEAL 317 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH------hc-------cccc---ChHHHHHHHHHHHHHhc
Confidence 45788999999999999999999873 222 2222211 11 0001 11233444555544456
Q ss_pred CcEEEEEcCCcccccc-cccCC------CCccccccccCCCCCcEEEEEecchhhhhhcc----CCCceEEccCCCHHHH
Q 046345 258 KKVLIILDNIWTKLEL-DVVGI------PYGDVEKERKDDESGCTIILTSRNRDLLEKDM----KSQKNFLIEVLSKDEA 326 (1462)
Q Consensus 258 k~~LlVlDdv~~~~~~-~~~~~------~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea 326 (1462)
.+++|++|+++....- ..-.. .+..+...+.....+.-||.||.+.......+ .-...+.++.-+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 8999999999753110 00000 00001111111233444666776665432111 2235788999999999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 327 LQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 327 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
.++|+.+................+++.+.|.-
T Consensus 398 ~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 398 EKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 99998887532211111222456677766654
No 226
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.03 E-value=0.00038 Score=75.87 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=27.5
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 38 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 38 LKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 333333344566 999999999999999999998753
No 227
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.03 E-value=0.00052 Score=70.77 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=36.6
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
....-+|....++.|.-.+..++ +.++.|++|+||||..+++.+-...
T Consensus 7 ~vtK~Fg~k~av~~isf~v~~G~--i~GllG~NGAGKTTtfRmILglle~ 54 (300)
T COG4152 7 GVTKSFGDKKAVDNISFEVPPGE--IFGLLGPNGAGKTTTFRMILGLLEP 54 (300)
T ss_pred cchhccCceeeecceeeeecCCe--EEEeecCCCCCccchHHHHhccCCc
Confidence 34445566666666665555566 9999999999999999999998754
No 228
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.02 E-value=0.00065 Score=72.08 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=27.1
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.+.....
T Consensus 9 ~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 9 KGLNFAAERGE--VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred cceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333344566 999999999999999999998653
No 229
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.02 E-value=0.0022 Score=79.06 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=41.1
Q ss_pred cCCccccchhHHHHHHHHHHhcc-----CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+.....++|.++.++++..++.. ...+++.|+|++|+||||+++.+++..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456788999999999888874 233579999999999999999999876
No 230
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.01 E-value=0.00038 Score=74.64 Aligned_cols=123 Identities=14% Similarity=0.134 Sum_probs=59.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC--C----cChHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL--N----ENTFQKAYRLC 251 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~----~~~~~~~~~l~ 251 (1462)
.++++|+|++|.||||+.+.+....... +-...+|..-... ....++...++..... . ..+.+++..+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la-~~G~~v~a~~~~~----~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLA-HIGSFVPADSATI----GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHH-hCCCeeEcCCcEE----eeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 4799999999999999999998543111 1011111110000 0111111111111110 0 01112222222
Q ss_pred HHHHccCcEEEEEcCCcccccccccCCCCccccccccCC-CCCcEEEEEecchhhhh
Q 046345 252 ERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDD-ESGCTIILTSRNRDLLE 307 (1462)
Q Consensus 252 ~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~-~~gs~IlvTtr~~~v~~ 307 (1462)
.. ..++.|+++|++....+...-......+.+.+... ..+..+|+|||+.+.+.
T Consensus 104 ~~--~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 104 RL--ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred Hh--CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 21 36889999999987654322111111122222212 23457999999998874
No 231
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00045 Score=75.31 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 16 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 16 VRGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred eeceeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 344443344566 999999999999999999998753
No 232
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.00 E-value=0.0013 Score=65.82 Aligned_cols=106 Identities=26% Similarity=0.313 Sum_probs=59.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL 254 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 254 (1462)
.++ +++|+|++|+|||||++.++..... ..+.+|+.-.. .++.-........+ .-.+...+
T Consensus 25 ~Ge--~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~lS~G~~~-rv~laral 85 (144)
T cd03221 25 PGD--RIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQLSGGEKM-RLALAKLL 85 (144)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEccCCHHHHH-HHHHHHHH
Confidence 455 9999999999999999999987642 23344442100 00000000111122 22233444
Q ss_pred HccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 255 KKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 255 ~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
-.++-++++|++....|.+........+.+ . +..||++|++.+.+
T Consensus 86 -~~~p~illlDEP~~~LD~~~~~~l~~~l~~----~--~~til~~th~~~~~ 130 (144)
T cd03221 86 -LENPNLLLLDEPTNHLDLESIEALEEALKE----Y--PGTVILVSHDRYFL 130 (144)
T ss_pred -hcCCCEEEEeCCccCCCHHHHHHHHHHHHH----c--CCEEEEEECCHHHH
Confidence 357789999999887665443221111111 1 34699999987765
No 233
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0019 Score=67.06 Aligned_cols=129 Identities=14% Similarity=0.198 Sum_probs=66.8
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC--CCHHHHHHHHHHHhCCCCC----CC------
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT--PDHQKIQDKLAFDLGMEFG----LN------ 240 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~----~~------ 240 (1462)
+..++ +++|+|++|+|||||++.++..... ..+.+++.-... ...... ...++.-.. ..
T Consensus 25 i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~ 95 (171)
T cd03228 25 IKPGE--KVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIREN 95 (171)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHH
Confidence 33556 9999999999999999999998643 233333321110 011111 111110000 00
Q ss_pred -cChHHH-HHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceEEc
Q 046345 241 -ENTFQK-AYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNFLI 318 (1462)
Q Consensus 241 -~~~~~~-~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~~l 318 (1462)
-+.-++ .-.+...+ -.++-++++|++.+..|..........+.+ ...+..||++|++..... . ..+.+.+
T Consensus 96 lLS~G~~~rl~la~al-~~~p~llllDEP~~gLD~~~~~~l~~~l~~----~~~~~tii~~sh~~~~~~--~-~d~~~~l 167 (171)
T cd03228 96 ILSGGQRQRIAIARAL-LRDPPILILDEATSALDPETEALILEALRA----LAKGKTVIVIAHRLSTIR--D-ADRIIVL 167 (171)
T ss_pred hhCHHHHHHHHHHHHH-hcCCCEEEEECCCcCCCHHHHHHHHHHHHH----hcCCCEEEEEecCHHHHH--h-CCEEEEE
Confidence 111111 12233334 367789999999987665433211111111 112567999999887762 2 4444444
No 234
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.00081 Score=68.79 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=64.6
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCC--HHHHHHHHHHHhCCCCCCCcChHHHHHHHHH
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPD--HQKIQDKLAFDLGMEFGLNENTFQKAYRLCE 252 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 252 (1462)
.++ +++|+|.+|+|||||++.++.... ...+.+++.-..... ..+ ....++........ +.+.-.+..
T Consensus 24 ~g~--~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~qlS~G-~~~r~~l~~ 93 (157)
T cd00267 24 AGE--IVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEE----LRRRIGYVPQLSGG-QRQRVALAR 93 (157)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHH----HHhceEEEeeCCHH-HHHHHHHHH
Confidence 444 999999999999999999998763 234444443322111 111 11112211111111 222223334
Q ss_pred HHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 253 RLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 253 ~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.+ ...+-++++|++....|.+........+.+. ...+..++++|++....
T Consensus 94 ~l-~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~---~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 94 AL-LLNPDLLLLDEPTSGLDPASRERLLELLREL---AEEGRTVIIVTHDPELA 143 (157)
T ss_pred HH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHHH
Confidence 44 3567899999998876654332211111111 12256799999988776
No 235
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.96 E-value=0.0008 Score=72.85 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=24.9
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 24 i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 24 IKKGE--FVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 44566 999999999999999999998764
No 236
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.96 E-value=0.00089 Score=73.12 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 160 DSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++....++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 17 ~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 17 AGDAKILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred eCCceeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccC
Confidence 343334444444444666 999999999999999999998753
No 237
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.96 E-value=0.033 Score=72.35 Aligned_cols=164 Identities=20% Similarity=0.165 Sum_probs=83.7
Q ss_pred ccchhHHHHHHHHHHhc------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 231 (1462)
..+|.++..+.|.+++. ..+.+++.++|++|+|||++|+.+++... ..| +-++++...+..++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~--~~~---~~i~~~~~~~~~~i~g~--- 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN--RKF---VRFSLGGVRDEAEIRGH--- 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CCe---EEEeCCCcccHHHHcCC---
Confidence 36788888888888664 12345899999999999999999999883 333 22233333233222110
Q ss_pred HhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccc------cccCCCCc-----cccccc---cCCCCCcEEE
Q 046345 232 DLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL------DVVGIPYG-----DVEKER---KDDESGCTII 297 (1462)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~------~~~~~~~~-----~l~~~~---~~~~~gs~Il 297 (1462)
...... .. .....+.+... ...+-++++|+++....- ..+...+. .+.+.. .-...+..+|
T Consensus 393 -~~~~~g--~~-~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 -RRTYVG--AM-PGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred -CCceeC--CC-CchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 000000 00 11111222222 123348899998765210 00000000 000000 0011234444
Q ss_pred EEecchhhh-hhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 298 LTSRNRDLL-EKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 298 vTtr~~~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
.||...... .....+...+++.+++.++-.++++.+.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 555443322 1223445689999999998888887654
No 238
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.96 E-value=0.001 Score=66.70 Aligned_cols=101 Identities=24% Similarity=0.253 Sum_probs=67.3
Q ss_pred CcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccc--hhhccccccCEEcc
Q 046345 570 EGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELP--LEIGLLTRLSLLDL 645 (1462)
Q Consensus 570 ~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L 645 (1462)
...-.+||++|.+..++ .|.++..|.+|.|.+|.|.. |.--..+.+|..|.|.+|+|.++- ..+..+++|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34567788888877664 36677888888888888777 333334567888888888777552 23456778888877
Q ss_pred CCcccccccC---ccccccccccceeeccC
Q 046345 646 SDCWSLEVIA---PNVISKLSRLEELYMGG 672 (1462)
Q Consensus 646 ~~~~~l~~~p---~~~l~~L~~L~~L~l~~ 672 (1462)
-+|+ +.... .-.+.++++|++||..+
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 7763 33322 22467788888888654
No 239
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.0017 Score=70.25 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=24.8
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 23 i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 23 VEKGE--IFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33556 999999999999999999998753
No 240
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.0006 Score=73.90 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=27.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 16 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 16 LDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred ecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 344443344566 999999999999999999998653
No 241
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.00015 Score=76.28 Aligned_cols=82 Identities=27% Similarity=0.360 Sum_probs=59.4
Q ss_pred hcCCcceEEEecCCCCCC---CCcccCCCCcCcEEEecCcccCC-cccc-ccccCCcEEEecCCCCC--ccchhhccccc
Q 046345 567 EGTEGLKVLDFTGIHFSS---LPSSLGRLTSLQTLCLHWCELED-IAIV-GQLKKLEILSFRDSDIK--ELPLEIGLLTR 639 (1462)
Q Consensus 567 ~~l~~Lr~L~Ls~~~i~~---lp~~i~~L~~Lr~L~L~~~~l~~-~~~i-~~L~~L~~L~L~~~~i~--~lp~~i~~L~~ 639 (1462)
....+++.|||.+|.|+. +-.-+.+|++|++|+|+.|++.. +.++ -.+.+|++|-|.|+.+. ........++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456778888888888763 33445678888888888888776 4555 36778888888887654 44455667888
Q ss_pred cCEEccCCc
Q 046345 640 LSLLDLSDC 648 (1462)
Q Consensus 640 L~~L~L~~~ 648 (1462)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 888887776
No 242
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.92 E-value=0.00018 Score=66.92 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=74.0
Q ss_pred CcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-ccccccccCCc
Q 046345 540 PRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IAIVGQLKKLE 618 (1462)
Q Consensus 540 ~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~ 618 (1462)
.+|....+++|. ..++|+.+-.+++.++.|++++|.|.++|..+..++.||.|+++.|++.. |..|..|.+|-
T Consensus 53 ~el~~i~ls~N~------fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 53 YELTKISLSDNG------FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred ceEEEEecccch------hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 345555566655 46667776667778999999999999999999999999999999999887 88888899999
Q ss_pred EEEecCCCCCccchhh
Q 046345 619 ILSFRDSDIKELPLEI 634 (1462)
Q Consensus 619 ~L~L~~~~i~~lp~~i 634 (1462)
+|+..+|.+..+|...
T Consensus 127 ~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 127 MLDSPENARAEIDVDL 142 (177)
T ss_pred HhcCCCCccccCcHHH
Confidence 9999999888888763
No 243
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.92 E-value=0.00062 Score=77.92 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.1
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 10 ~~vs~~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 10 DGVNFKVREGE--VFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred eeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333344566 999999999999999999998764
No 244
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00095 Score=74.09 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=33.7
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..+....++....++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 15 i~~l~~~~~~~~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEEEEEECCcceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 3343333443334444444444666 999999999999999999998764
No 245
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.89 E-value=0.0023 Score=70.88 Aligned_cols=128 Identities=18% Similarity=0.209 Sum_probs=65.7
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC---CC---eEEEEEecCCC------CHH-----------HHHHHHH
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS---FD---KVVMAEVTQTP------DHQ-----------KIQDKLA 230 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~---f~---~~~wv~~~~~~------~~~-----------~~~~~i~ 230 (1462)
..++ +++|+|++|+|||||++.++........ ++ .+.++.-.... +.. +-...++
T Consensus 28 ~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 105 (251)
T PRK09544 28 KPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPAL 105 (251)
T ss_pred cCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHH
Confidence 3555 9999999999999999999987643211 11 12222111000 111 1122333
Q ss_pred HHhCCCCCC-----CcChHHHHH-HHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 231 FDLGMEFGL-----NENTFQKAY-RLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 231 ~~l~~~~~~-----~~~~~~~~~-~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
+.++..... .-+.-++.. .+...+ -.++-++++|++.+..|..........+.+. . ...|..||++|++..
T Consensus 106 ~~~gl~~~~~~~~~~LSgGq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~-~~~g~tiiivsH~~~ 182 (251)
T PRK09544 106 KRVQAGHLIDAPMQKLSGGETQRVLLARAL-LNRPQLLVLDEPTQGVDVNGQVALYDLIDQL-R-RELDCAVLMVSHDLH 182 (251)
T ss_pred HHcCChHHHhCChhhCCHHHHHHHHHHHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-H-HhcCCEEEEEecCHH
Confidence 344432110 111122222 223333 3577799999999887655432211111111 1 112667999999887
Q ss_pred hh
Q 046345 305 LL 306 (1462)
Q Consensus 305 v~ 306 (1462)
.+
T Consensus 183 ~i 184 (251)
T PRK09544 183 LV 184 (251)
T ss_pred HH
Confidence 65
No 246
>PRK06526 transposase; Provisional
Probab=96.88 E-value=0.0051 Score=67.60 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=43.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
.-+.++|++|+|||+||..++...... .+ .+.|+ +..++...+..... .. ........+ .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~~-----~~----~~~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAHH-----AG----RLQAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHHh-----cC----cHHHHHHHh--cc
Confidence 368999999999999999999887532 22 23332 33445555543211 00 111222333 34
Q ss_pred cEEEEEcCCccc
Q 046345 259 KVLIILDNIWTK 270 (1462)
Q Consensus 259 ~~LlVlDdv~~~ 270 (1462)
.-+||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 559999999643
No 247
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.029 Score=64.16 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHH----ccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecchh-hhhhccCCCceE
Q 046345 244 FQKAYRLCERLK----KEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNRD-LLEKDMKSQKNF 316 (1462)
Q Consensus 244 ~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~-v~~~~~~~~~~~ 316 (1462)
.+.++.+.+.+. .+++-++|+|+++.. .....+...+.+ ..+++.+|++|.+.+ +......+...+
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL~t~~~~~LLpTI~SRcq~i 186 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-------PPPGTVFLLVSARIDRLLPTILSRCRQF 186 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-------CCcCcEEEEEECChhhCcHHHHhcCEEE
Confidence 344555555442 256679999998765 223333222222 445676666666644 333344556789
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 317 LIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 317 ~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
.+.+++.++..+.+... +. +. ...++..++|.|..+..
T Consensus 187 ~~~~~~~~~~~~~L~~~-~~----~~----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 187 PMTVPAPEAAAAWLAAQ-GV----AD----ADALLAEAGGAPLAALA 224 (342)
T ss_pred EecCCCHHHHHHHHHHc-CC----Ch----HHHHHHHcCCCHHHHHH
Confidence 99999999999888765 21 11 22357788999975543
No 248
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.86 E-value=0.00095 Score=71.81 Aligned_cols=29 Identities=38% Similarity=0.481 Sum_probs=25.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 23 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 23 LYAGE--IIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 44566 999999999999999999998753
No 249
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.86 E-value=0.00061 Score=74.20 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|.+|+|||||++.++....
T Consensus 21 l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 21 VDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred ecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcC
Confidence 334433344566 999999999999999999998763
No 250
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.00096 Score=84.54 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 160 DSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+|....++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 11 ~g~~~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~ 52 (638)
T PRK10636 11 RGVRVLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEIS 52 (638)
T ss_pred eCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 344344455554455677 999999999999999999999753
No 251
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.85 E-value=0.0023 Score=69.52 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=27.1
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 20 ~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 20 DNLNFHITKGE--MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333344566 999999999999999999998753
No 252
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.82 E-value=0.00087 Score=72.99 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 20 l~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 20 LKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 333333344566 999999999999999999998764
No 253
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.82 E-value=0.00063 Score=73.79 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 16 l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 16 LDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred eeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 344433344566 999999999999999999998763
No 254
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.00095 Score=73.52 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 21 l~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 21 LKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred eecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 333433344566 999999999999999999998764
No 255
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.82 E-value=0.00099 Score=84.93 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=95.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH-hhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC------CCcChHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQV-MEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG------LNENTFQKAYR 249 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~ 249 (1462)
+.++++|+|++|.||||+.+.+.... ..... .+|.+...... .++.++...++.... .-.........
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 34699999999999999999998873 21111 01111110000 001111111110000 00011112222
Q ss_pred HHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCce--EEccCCCHHHHH
Q 046345 250 LCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKN--FLIEVLSKDEAL 327 (1462)
Q Consensus 250 l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~--~~l~~L~~~ea~ 327 (1462)
+...+ .++-|+++|++....+..........+.+++ ...|+.+|+|||.............+ ..+. ++.+ ..
T Consensus 396 il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l 469 (771)
T TIGR01069 396 ILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TL 469 (771)
T ss_pred HHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CC
Confidence 22222 5789999999987755433221111222222 23578899999998775322221111 1111 1111 11
Q ss_pred HHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 046345 328 QLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALKSKSLDFWKDALYRLRSS 386 (1462)
Q Consensus 328 ~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~ 386 (1462)
. |....-.. . .....|-+||+++ |+|-.|..-|..+.......+..++.++...
T Consensus 470 ~-p~Ykl~~G--~-~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 470 S-PTYKLLKG--I-PGESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSAL 523 (771)
T ss_pred c-eEEEECCC--C-CCCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 0 11111000 1 1134677888887 8888888888777666555667777766543
No 256
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.81 E-value=0.0029 Score=69.75 Aligned_cols=124 Identities=17% Similarity=0.214 Sum_probs=64.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccC---CC--eEEEEEecC----CCCHHHHH--------------HHHHHHhCCC
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKS---FD--KVVMAEVTQ----TPDHQKIQ--------------DKLAFDLGME 236 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~---f~--~~~wv~~~~----~~~~~~~~--------------~~i~~~l~~~ 236 (1462)
+++|+|++|+|||||++.++........ ++ .+.++.-.. ..++.+.+ .++++.++..
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~ 106 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIE 106 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCH
Confidence 9999999999999999999997643211 11 122221110 11222222 2233333332
Q ss_pred CCC-----CcChHHHHH-HHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 237 FGL-----NENTFQKAY-RLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 237 ~~~-----~~~~~~~~~-~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
... .-+.-++.. .+...+ ..++-++++|++....|..........+.+. . ...|..||++||+...+
T Consensus 107 ~~~~~~~~~LSgGe~qrv~iaraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~-~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 107 QILDREVPELSGGELQRVAIAACL-SKDADIYLLDEPSAYLDVEQRLMASKVIRRF-A-ENNEKTAFVVEHDIIMI 179 (246)
T ss_pred HHhhCChhhCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-H-HhcCCEEEEEeCCHHHH
Confidence 110 111122222 223333 3677899999999887765432221111111 0 12367799999998765
No 257
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.81 E-value=0.00061 Score=72.17 Aligned_cols=116 Identities=18% Similarity=0.238 Sum_probs=59.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhh--ccCCC---------eEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVME--DKSFD---------KVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKA 247 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~--~~~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 247 (1462)
++++|+|++|.|||||++.++..... .+.+- ..++...+ +.+.+....+ . ...+..++
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~-------~~d~l~~~~s--~--~~~e~~~~ 94 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIR-------VSDDLRDGIS--Y--FYAELRRL 94 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEecc-------chhccccccC--h--HHHHHHHH
Confidence 59999999999999999999876632 11110 00111110 1111111000 0 01112233
Q ss_pred HHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhh
Q 046345 248 YRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE 307 (1462)
Q Consensus 248 ~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~ 307 (1462)
..+.+.+...++-++++|++....+..........+.+.+ ...|..+|++|++.+.+.
T Consensus 95 ~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l--~~~~~tiiivTH~~~~~~ 152 (199)
T cd03283 95 KEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFL--KNKNTIGIISTHDLELAD 152 (199)
T ss_pred HHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHH--HHCCCEEEEEcCcHHHHH
Confidence 4444443113789999999876544322111111111111 224778999999988773
No 258
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.80 E-value=0.0023 Score=67.26 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=24.6
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++ +++|+|++|+|||||++.++....
T Consensus 24 ~~G~--~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 24 RAGE--IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred cCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3555 999999999999999999998764
No 259
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.80 E-value=0.00055 Score=75.38 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 16 l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 16 VNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred eccceeEecCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 344443444566 999999999999999999998753
No 260
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.79 E-value=0.0041 Score=67.89 Aligned_cols=27 Identities=30% Similarity=0.600 Sum_probs=24.0
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..++ +++|+|++|+|||||++.++...
T Consensus 24 ~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 24 PKNS--VYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3556 99999999999999999999875
No 261
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.004 Score=63.22 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=40.9
Q ss_pred cccCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 151 IQVKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 151 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
....+...+||-.+.++.+.-.+..+. |.++.|++|+||||+.+.+.+-.
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHhhc
Confidence 445677888998888888876665566 99999999999999999887755
No 262
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.77 E-value=0.0013 Score=71.50 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=28.6
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 17 il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 17 ALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444444445666 999999999999999999998753
No 263
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0021 Score=68.07 Aligned_cols=122 Identities=19% Similarity=0.216 Sum_probs=61.5
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHh---hccC--CC----------eEEEEEecCC-CCHHHHHHHHHHHhCCCC
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM---EDKS--FD----------KVVMAEVTQT-PDHQKIQDKLAFDLGMEF 237 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~---~~~~--f~----------~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 237 (1462)
..++ +++|+|++|+|||||++.++.... .... |+ .+.|+.-... +....+.+.+.......
T Consensus 31 ~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~- 107 (192)
T cd03232 31 KPGT--LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR- 107 (192)
T ss_pred eCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh-
Confidence 3455 999999999999999999997531 1110 11 1122211111 11112222222111000
Q ss_pred CCCcChHHHH-HHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 238 GLNENTFQKA-YRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 238 ~~~~~~~~~~-~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
.-+.-++. -.+...+ -.++-++++|++....|.+........+.+. ...|..||++|++..
T Consensus 108 --~LSgGe~qrv~la~al-~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiiivtH~~~ 169 (192)
T cd03232 108 --GLSVEQRKRLTIGVEL-AAKPSILFLDEPTSGLDSQAAYNIVRFLKKL---ADSGQAILCTIHQPS 169 (192)
T ss_pred --cCCHHHhHHHHHHHHH-hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHH---HHcCCEEEEEEcCCh
Confidence 11122222 2233333 3577899999998876654432222222211 224678999999875
No 264
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.76 E-value=0.002 Score=69.36 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=36.0
Q ss_pred cCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceEEccCC
Q 046345 257 EKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNFLIEVL 321 (1462)
Q Consensus 257 ~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~~l~~L 321 (1462)
.++-++++|++.+..|..........+.+. ...|..||++|++..... . .+++.++..
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~~~-~---~~~~~~~~~ 201 (207)
T PRK13539 144 SNRPIWILDEPTAALDAAAVALFAELIRAH---LAQGGIVIAATHIPLGLP-G---ARELDLGPF 201 (207)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCchhhc-c---CcEEeecCc
Confidence 567799999998876654332221111111 224678999999987652 1 567777653
No 265
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.76 E-value=0.005 Score=67.33 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=27.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|.+|+|||||++.++....
T Consensus 24 l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 24 LKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred EecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 333433344566 999999999999999999998764
No 266
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.75 E-value=0.001 Score=76.26 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=29.0
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 19 ~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 19 VVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred EEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 4444544455666 999999999999999999998653
No 267
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.74 E-value=0.01 Score=67.45 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=67.3
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCe-EEEEEecCC-CCHHHHHHHHHHHhCCCCCCCcCh
Q 046345 167 QDVVEAAKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDK-VVMAEVTQT-PDHQKIQDKLAFDLGMEFGLNENT 243 (1462)
Q Consensus 167 ~~l~~~l~~-~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~ 243 (1462)
.++++.+.- ++-..+.|+|..|+|||||++.+++.... ++-+. ++|+.+.+. .++.++.+.+...+..........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 345555542 34448899999999999999999998753 34344 477777754 567888888888776554311111
Q ss_pred H--H---HHHHHHHHH-HccCcEEEEEcCCccc
Q 046345 244 F--Q---KAYRLCERL-KKEKKVLIILDNIWTK 270 (1462)
Q Consensus 244 ~--~---~~~~l~~~l-~~~k~~LlVlDdv~~~ 270 (1462)
. . ......+++ .++++++||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 1 122223333 3589999999999654
No 268
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.74 E-value=0.00086 Score=77.46 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=36.2
Q ss_pred ccCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 152 QVKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
...+....+|....++.+.-.+..++ +++|+|++|+|||||.+.++....
T Consensus 43 ~i~nl~k~y~~~~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 43 DLAGVSKSYGDKAVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCC
Confidence 34455555554445555554455666 999999999999999999999764
No 269
>PRK08116 hypothetical protein; Validated
Probab=96.72 E-value=0.0035 Score=69.77 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=58.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
..+.++|..|+|||.||.++++..... ...+++++ ..+++..+......... .....+.+.+. +-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~------~~~~~~~~~l~-~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK------EDENEIIRSLV-NA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc------ccHHHHHHHhc-CC
Confidence 358899999999999999999998643 23456665 34455555544322111 11223344443 22
Q ss_pred cEEEEEcCCcc--cccccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 259 KVLIILDNIWT--KLELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 259 ~~LlVlDdv~~--~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
=|||+||+.. ..+|..- .+-.+++.+ ...|..+||||...
T Consensus 180 -dlLviDDlg~e~~t~~~~~--~l~~iin~r--~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 -DLLILDDLGAERDTEWARE--KVYNIIDSR--YRKGLPTIVTTNLS 221 (268)
T ss_pred -CEEEEecccCCCCCHHHHH--HHHHHHHHH--HHCCCCEEEECCCC
Confidence 2899999943 3344321 011111111 12455688888743
No 270
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.72 E-value=0.0014 Score=70.20 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=27.1
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|.+|+|||||.+.+++...
T Consensus 17 ~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 17 SGLSFTLAAGE--ALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred ccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333344566 999999999999999999998753
No 271
>PLN03073 ABC transporter F family; Provisional
Probab=96.71 E-value=0.0034 Score=79.87 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=76.2
Q ss_pred cCCccccch-hHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC---CC---eEEEEEecC--CCCH-
Q 046345 153 VKDYEAFDS-RMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS---FD---KVVMAEVTQ--TPDH- 222 (1462)
Q Consensus 153 ~~~~~~~~g-r~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~---f~---~~~wv~~~~--~~~~- 222 (1462)
..+....++ +...++.+.-.+..++ +++|+|++|+|||||++.+++...+... ++ .+.++.-.. ..+.
T Consensus 511 ~~~ls~~y~~~~~il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~ 588 (718)
T PLN03073 511 FSDASFGYPGGPLLFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLS 588 (718)
T ss_pred EEeeEEEeCCCCeeEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcc
Confidence 344444443 2224444444444566 9999999999999999999987643210 00 111211100 0000
Q ss_pred ---------------HHHHHHHHHHhCCCCC------CCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCc
Q 046345 223 ---------------QKIQDKLAFDLGMEFG------LNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYG 281 (1462)
Q Consensus 223 ---------------~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~ 281 (1462)
..-...++..++.... ..-+.-++....+....-.++-+||||++.+..|.........
T Consensus 589 ~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~ 668 (718)
T PLN03073 589 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668 (718)
T ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 1112334444554311 1122233333333333246888999999999877654332222
Q ss_pred cccccccCCCCCcEEEEEecchhhh
Q 046345 282 DVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 282 ~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.+.+ . .| .||++||+...+
T Consensus 669 ~L~~----~-~g-tvIivSHd~~~i 687 (718)
T PLN03073 669 GLVL----F-QG-GVLMVSHDEHLI 687 (718)
T ss_pred HHHH----c-CC-EEEEEECCHHHH
Confidence 2211 1 24 699999998776
No 272
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0055 Score=72.98 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=66.6
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEE-------Eec----CCCCHHHH----------------
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMA-------EVT----QTPDHQKI---------------- 225 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv-------~~~----~~~~~~~~---------------- 225 (1462)
+..++ +++|+|++|+|||||++.+++...+. .+.+++ ... ...++.+.
T Consensus 47 I~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~ 121 (549)
T PRK13545 47 VPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIK 121 (549)
T ss_pred EeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHH
Confidence 34566 99999999999999999999976432 112221 111 11111111
Q ss_pred --HHHHHHHhCCCCC-----CCcChHHHHH-HHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEE
Q 046345 226 --QDKLAFDLGMEFG-----LNENTFQKAY-RLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTII 297 (1462)
Q Consensus 226 --~~~i~~~l~~~~~-----~~~~~~~~~~-~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~Il 297 (1462)
...+++.++.... ..-+.-++.+ .+...+ ...+-++|||++.+..|..........+.+. ...|..||
T Consensus 122 e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL-~~~P~LLLLDEPTsgLD~~sr~~LlelL~el---~~~G~TII 197 (549)
T PRK13545 122 EIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISV-HINPDILVIDEALSVGDQTFTKKCLDKMNEF---KEQGKTIF 197 (549)
T ss_pred HHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHH---HhCCCEEE
Confidence 1123333333211 0112222222 233333 3577899999999887655332222222111 23467799
Q ss_pred EEecchhhh
Q 046345 298 LTSRNRDLL 306 (1462)
Q Consensus 298 vTtr~~~v~ 306 (1462)
++||+...+
T Consensus 198 IVSHdl~~i 206 (549)
T PRK13545 198 FISHSLSQV 206 (549)
T ss_pred EEECCHHHH
Confidence 999987665
No 273
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.70 E-value=0.0033 Score=67.85 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.2
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++ +++|+|++|+|||||++.++....
T Consensus 24 ~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 24 KKGE--IYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cCCc--EEEEECCCCCCHHHHHHHHhCCcC
Confidence 3455 999999999999999999998653
No 274
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.70 E-value=0.0016 Score=72.62 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=28.3
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 18 VLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred eeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444444444566 999999999999999999998653
No 275
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.70 E-value=0.011 Score=61.77 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEe
Q 046345 162 RMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEV 216 (1462)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~ 216 (1462)
+.......++.+.+.+ ++.+.|++|+|||.||.+.+-+.-..+.++.++++.-
T Consensus 5 ~~~~Q~~~~~al~~~~--~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp 57 (205)
T PF02562_consen 5 KNEEQKFALDALLNND--LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRP 57 (205)
T ss_dssp -SHHHHHHHHHHHH-S--EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-
T ss_pred CCHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4444555555555444 9999999999999999999988766788888877753
No 276
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.70 E-value=0.0018 Score=80.02 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 160 DSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+|....++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 13 ~~~~~il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 13 LSDTKTLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred cCCeeecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCC
Confidence 343334555554455677 999999999999999999998763
No 277
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.69 E-value=0.0017 Score=80.51 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=77.7
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC---CC---------------eEEEE
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS---FD---------------KVVMA 214 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~---f~---------------~~~wv 214 (1462)
..+....+|....++.+.-.+..++ +++|+|++|+|||||++.++........ ++ .+.|+
T Consensus 14 ~~~l~~~~~~~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 91 (510)
T PRK15439 14 ARSISKQYSGVEVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV 91 (510)
T ss_pred EEeEEEEeCCceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3444444444334444444444666 9999999999999999999987532110 11 12222
Q ss_pred EecC----CCCHH--------------HHHHHHHHHhCCCCCCC-----cChHHHHH-HHHHHHHccCcEEEEEcCCccc
Q 046345 215 EVTQ----TPDHQ--------------KIQDKLAFDLGMEFGLN-----ENTFQKAY-RLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 215 ~~~~----~~~~~--------------~~~~~i~~~l~~~~~~~-----~~~~~~~~-~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
.=.. ..++. +-..++++.++...... -+.-++.. .+...+ -.++-++++|++.+.
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL-~~~p~lllLDEPt~~ 170 (510)
T PRK15439 92 PQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGL-MRDSRILILDEPTAS 170 (510)
T ss_pred eccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHH-HcCCCEEEEECCCCC
Confidence 1110 01111 12233445555532211 11122222 233333 367789999999988
Q ss_pred ccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 271 LELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 271 ~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.|..........+.+. ...|..||++||+...+
T Consensus 171 LD~~~~~~l~~~l~~~---~~~g~tiiivtHd~~~~ 203 (510)
T PRK15439 171 LTPAETERLFSRIREL---LAQGVGIVFISHKLPEI 203 (510)
T ss_pred CCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHHH
Confidence 7764432222222111 22467899999998765
No 278
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.69 E-value=0.0043 Score=66.57 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=27.2
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 18 ~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 18 SGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred ecceEEECCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333344566 999999999999999999998754
No 279
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.69 E-value=0.0034 Score=69.47 Aligned_cols=37 Identities=22% Similarity=0.508 Sum_probs=29.2
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
.++.+. .+..++ +++|+|++|+|||||++.++.....
T Consensus 16 ~l~~i~-~i~~Ge--~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 16 KLHRLP-VPREGQ--VLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred hhhcCC-CCCCCC--EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 445554 344566 9999999999999999999998753
No 280
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.015 Score=69.37 Aligned_cols=189 Identities=13% Similarity=0.162 Sum_probs=113.9
Q ss_pred ccccchhHHHHHHHHHHhccCC-ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~-~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
...++|.+.....|...+..++ .+.....|+-|+||||+|+.++...--... ........-...+.|...-.
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcCCc
Confidence 4556899999999999988655 346779999999999999999998832211 01111111122223322200
Q ss_pred CCCC----CCcChHHHHHHHHHHHH----ccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecch-
Q 046345 235 MEFG----LNENTFQKAYRLCERLK----KEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNR- 303 (1462)
Q Consensus 235 ~~~~----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~- 303 (1462)
.... ......+.++.+.+... .++.-+.|+|+|.-. ..|.++..-+.+ .....+.|+.|++.
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-------PP~hV~FIlATTe~~ 160 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-------PPSHVKFILATTEPQ 160 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-------CccCeEEEEecCCcC
Confidence 0000 01223344555555542 256669999999654 344444332222 44556666655554
Q ss_pred hhhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch
Q 046345 304 DLLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV 359 (1462)
Q Consensus 304 ~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 359 (1462)
.+......+...|.+..++.++-...+...+.... -...++...-|++..+|...
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~-I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG-INIEEDALSLIARAAEGSLR 215 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHcCCChh
Confidence 44444556677899999999998888888875322 23345667778888877654
No 281
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.68 E-value=0.00081 Score=71.85 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=27.0
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
++.+.-.+..++ +++|+|.+|+|||||++.++..
T Consensus 16 l~~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 16 LKGVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eeccceEECCCc--EEEEECCCCCCHHHHHHHHhCC
Confidence 344443444566 9999999999999999999987
No 282
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.67 E-value=0.0012 Score=71.09 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.9
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 21 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 21 IEKGK--MYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EeCCc--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 34566 999999999999999999998764
No 283
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.67 E-value=0.0012 Score=82.34 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=28.1
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 17 l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 17 FENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred EeCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 344443344566 999999999999999999998764
No 284
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.66 E-value=0.0011 Score=75.97 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=74.4
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhc----------------------------cCCCeEEEEEecC
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMED----------------------------KSFDKVVMAEVTQ 218 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~----------------------------~~f~~~~wv~~~~ 218 (1462)
+.+.-.+..++ +.++.|.+|+|||||++.+|.-..++ +||..+=-.++.+
T Consensus 21 d~V~l~v~~Ge--IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~E 98 (501)
T COG3845 21 DDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAE 98 (501)
T ss_pred CceeeeecCCc--EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhh
Confidence 33443444566 99999999999999999999988543 3443221112111
Q ss_pred C------------CC---HHHHHHHHHHHhCCCCCCCcCh------HHHHHHHHHHHHccCcEEEEEcCCcccccccccC
Q 046345 219 T------------PD---HQKIQDKLAFDLGMEFGLNENT------FQKAYRLCERLKKEKKVLIILDNIWTKLELDVVG 277 (1462)
Q Consensus 219 ~------------~~---~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~ 277 (1462)
+ .+ ..+-.+++.++.+...+.+... ++..-.+.+.|- ...-+||||++.......+..
T Consensus 99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy-r~a~iLILDEPTaVLTP~E~~ 177 (501)
T COG3845 99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY-RGARLLILDEPTAVLTPQEAD 177 (501)
T ss_pred hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh-cCCCEEEEcCCcccCCHHHHH
Confidence 1 12 2344455566777666532211 222233445453 466799999998764332222
Q ss_pred CCCccccccccCCCCCcEEEEEecchhhh
Q 046345 278 IPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 278 ~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
..+..+.+. ...|..||+.||.-...
T Consensus 178 ~lf~~l~~l---~~~G~tIi~ITHKL~Ev 203 (501)
T COG3845 178 ELFEILRRL---AAEGKTIIFITHKLKEV 203 (501)
T ss_pred HHHHHHHHH---HHCCCEEEEEeccHHHH
Confidence 212111111 34577788888765443
No 285
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.66 E-value=0.0015 Score=71.88 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=27.4
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 37 l~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 37 LKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred eeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcC
Confidence 333333334566 999999999999999999998653
No 286
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.65 E-value=0.0016 Score=72.26 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 18 l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 18 LFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 333433344566 999999999999999999998764
No 287
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.65 E-value=0.0067 Score=64.78 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=24.8
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 23 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 23 LNAGE--ALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33556 999999999999999999998753
No 288
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0046 Score=70.79 Aligned_cols=97 Identities=22% Similarity=0.211 Sum_probs=65.6
Q ss_pred cCCccccchhHHHHHHHHHHhccC--------C-ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDD--------K-LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~--------~-~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
+.+..+...-..++++|+++|.++ + ++=|.++|++|.|||-||++++....+ . ||...+..|+..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V--P----FF~~sGSEFdEm 376 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV--P----FFYASGSEFDEM 376 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC--C----eEeccccchhhh
Confidence 344444445567889999999853 2 346889999999999999999998843 1 222233333211
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccc
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
. ..-...+++.+++.-+..-+++|.+|+++..
T Consensus 377 ------~---------VGvGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 377 ------F---------VGVGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred ------h---------hcccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1 1112456777777777788999999998753
No 289
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.64 E-value=0.0059 Score=66.54 Aligned_cols=27 Identities=30% Similarity=0.619 Sum_probs=23.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|.+|+|||||++.+++...
T Consensus 5 ~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGE--LLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 455 999999999999999999998754
No 290
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.64 E-value=0.04 Score=61.53 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHH
Q 046345 163 MKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKI 225 (1462)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 225 (1462)
...++++..++..+. .+.+.|++|+|||++|+.++... +. ..++++.....+..++
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l--g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR--DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh--CC---CEEEEeCCccCCHHHH
Confidence 445666677776665 67799999999999999999754 22 2455555555444444
No 291
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.64 E-value=0.0049 Score=68.61 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=25.1
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 24 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 24 LESGE--LLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 44566 999999999999999999998764
No 292
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.64 E-value=0.0012 Score=70.09 Aligned_cols=128 Identities=19% Similarity=0.252 Sum_probs=66.8
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH--hhccCCCeEEEE---------------EecCC---CCHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV--MEDKSFDKVVMA---------------EVTQT---PDHQK 224 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~--~~~~~f~~~~wv---------------~~~~~---~~~~~ 224 (1462)
.++.+.-.+..++ +++|.|++|+|||||++.++... ... .+.+++ .+.+. +....
T Consensus 24 ~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 24 LLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 3444443344566 99999999999999999999875 321 111111 11111 11112
Q ss_pred HHHHHHHHhCCCCCCCcChHHH-HHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 225 IQDKLAFDLGMEFGLNENTFQK-AYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
+.+.+....... .-+.-++ .-.+...+. .++-++++|++.+..|..........+.+. ...|..||++|++.
T Consensus 99 ~~~~i~~~~~~~---~LS~G~~qrv~laral~-~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~ 171 (194)
T cd03213 99 VRETLMFAAKLR---GLSGGERKRVSIALELV-SNPSLLFLDEPTSGLDSSSALQVMSLLRRL---ADTGRTIICSIHQP 171 (194)
T ss_pred HHHHHHHHHHhc---cCCHHHHHHHHHHHHHH-cCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEEecCc
Confidence 222222111100 1112222 223334443 577799999999886655433222222211 22477899999987
Q ss_pred h
Q 046345 304 D 304 (1462)
Q Consensus 304 ~ 304 (1462)
.
T Consensus 172 ~ 172 (194)
T cd03213 172 S 172 (194)
T ss_pred h
Confidence 4
No 293
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.64 E-value=0.0017 Score=82.64 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 160 DSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+|....++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 13 ~~~~~il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~ 54 (635)
T PRK11147 13 FSDAPLLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVL 54 (635)
T ss_pred eCCceeEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCC
Confidence 343334444444445666 999999999999999999998763
No 294
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.63 E-value=0.018 Score=74.79 Aligned_cols=106 Identities=15% Similarity=0.218 Sum_probs=60.6
Q ss_pred cccchhHHHHHHHHHHhcc---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQD 227 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 227 (1462)
..++|.+..++.+...+.. ....++.++|+.|+|||.+|+.+++.... .....+-++++.-.+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~--~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG--GEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC--CCcceEEEeHHHhhhh----h
Confidence 3578999999999888741 22347899999999999999999988732 2222333333221111 1
Q ss_pred HHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccc
Q 046345 228 KLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
.+.+-+|.+..-.... ....+.+.+++...-+|+||+++..
T Consensus 640 ~~~~l~g~~~gyvg~~--~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYG--EGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCccccc--ccchHHHHHHhCCCcEEEEechhhc
Confidence 1112223222111111 1112334444456679999999754
No 295
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0017 Score=72.95 Aligned_cols=29 Identities=24% Similarity=0.595 Sum_probs=25.1
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 47 i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 47 VREGE--IFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 44566 999999999999999999998764
No 296
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.63 E-value=0.00089 Score=73.19 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=24.7
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 23 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 23 VPEGE--IVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EcCCe--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33555 999999999999999999988753
No 297
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.02 Score=70.49 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=110.0
Q ss_pred cCCccccchhHHHHHHHHHHhccC---------CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~---------~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
.+++.+..--.+++++++++|.++ -++=+.++|++|+|||-||++++.... +=|++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH----
Confidence 344333333455666667777642 245678999999999999999999884 223444332
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccc---cCC-----------CCccccccccC
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDV---VGI-----------PYGDVEKERKD 289 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~---~~~-----------~~~~l~~~~~~ 289 (1462)
++.+-+. + ....+++.++..-+...+.++.+|+++...--.. ... .+.++-. + .
T Consensus 379 EFvE~~~---g-------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg-f-~ 446 (774)
T KOG0731|consen 379 EFVEMFV---G-------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG-F-E 446 (774)
T ss_pred HHHHHhc---c-------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC-C-c
Confidence 1111111 1 1134566677777678899999999875422110 000 0111100 0 0
Q ss_pred CCCCcEEEEEecchhhhhhc---cC-CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 290 DESGCTIILTSRNRDLLEKD---MK-SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 290 ~~~gs~IlvTtr~~~v~~~~---~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
...+--++-+|+..++.... .+ -.+.+.++.-+.....++|.-++.......+..+..+ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 12333344466666655211 12 2358899999999999999999865544456667777 999999988664
No 298
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.005 Score=67.08 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=25.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 27 i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 27 VEEGE--FVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EeCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 44566 999999999999999999998764
No 299
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.60 E-value=0.0055 Score=67.58 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=25.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 24 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 24 VRPGE--FVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCcC
Confidence 34566 999999999999999999998764
No 300
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.60 E-value=0.005 Score=65.86 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 17 l~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 17 LQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 333333344566 999999999999999999998764
No 301
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.60 E-value=0.046 Score=59.49 Aligned_cols=92 Identities=14% Similarity=0.261 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhcc--CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC
Q 046345 162 RMKVFQDVVEAAKD--DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL 239 (1462)
Q Consensus 162 r~~~~~~l~~~l~~--~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 239 (1462)
....+..+.++..+ .....+.++|.+|+|||+||.++++.....+ ..+++++ ..++...+-.... . .
T Consensus 81 q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it------~~~l~~~l~~~~~-~-~- 149 (244)
T PRK07952 81 QMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIIT------VADIMSAMKDTFS-N-S- 149 (244)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEE------HHHHHHHHHHHHh-h-c-
Confidence 33345555554432 2234788999999999999999999985332 3455654 3445544443332 1 0
Q ss_pred CcChHHHHHHHHHHHHccCcEEEEEcCCccc
Q 046345 240 NENTFQKAYRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 240 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
... ...+.+.+. +.=+||+||+...
T Consensus 150 ~~~----~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 150 ETS----EEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ccc----HHHHHHHhc--cCCEEEEeCCCCC
Confidence 111 123444442 3448999999654
No 302
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.59 E-value=0.00083 Score=74.21 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=27.1
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 17 ~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 17 DDVSFSVRPGE--IHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred cCceEEecCCc--EEEEECCCCCCHHHHHHHHcCCCC
Confidence 33333344566 999999999999999999998653
No 303
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.58 E-value=0.0011 Score=72.08 Aligned_cols=164 Identities=20% Similarity=0.260 Sum_probs=90.6
Q ss_pred CCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC--------------CcccCCCCcCcEEEecCc
Q 046345 538 QCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL--------------PSSLGRLTSLQTLCLHWC 603 (1462)
Q Consensus 538 ~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l--------------p~~i~~L~~Lr~L~L~~~ 603 (1462)
.+++|++|+++.|..|.- -..--...++++..|+.|.|.+|.+... ..-+.+-..||+++..+|
T Consensus 90 ~~~~L~~ldLSDNA~G~~--g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPK--GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cCCceeEeeccccccCcc--chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 556777777777754211 1111223456667777777777766421 122345556777777777
Q ss_pred ccCC-c-----cccccccCCcEEEecCCCCC-----ccchhhccccccCEEccCCcccccccC----cccccccccccee
Q 046345 604 ELED-I-----AIVGQLKKLEILSFRDSDIK-----ELPLEIGLLTRLSLLDLSDCWSLEVIA----PNVISKLSRLEEL 668 (1462)
Q Consensus 604 ~l~~-~-----~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~~p----~~~l~~L~~L~~L 668 (1462)
.+.+ + ..+...+.|+.+.++.|.|. -+-..+..+++|+.|||.+|+ ++.-. ...+..+++|++|
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheee
Confidence 7655 2 34555667777777777553 122345667777777777764 22111 1225556677777
Q ss_pred eccCcccccccccCCCccchHhhhc-CCCCcEEEEEeeccc
Q 046345 669 YMGGSFSQWDKVEGGSNARLDELKE-LSKLTTLEIHVRDAE 708 (1462)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~L~~-l~~L~~L~l~~~~~~ 708 (1462)
+++.|..... ...+....+.. .+.|+.|.+.+|.++
T Consensus 247 ~l~dcll~~~----Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 247 NLGDCLLENE----GAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccccc----cHHHHHHHHhccCCCCceeccCcchhH
Confidence 7777765321 11223333332 456777777666543
No 304
>PRK08118 topology modulation protein; Reviewed
Probab=96.58 E-value=0.0013 Score=67.52 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=28.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhc-cCCCeEEE
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMED-KSFDKVVM 213 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~-~~f~~~~w 213 (1462)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999988433 45677776
No 305
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.024 Score=65.42 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=101.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHc
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKK 256 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 256 (1462)
....+.|+|..|.|||.|++++++.......=..+++++ ...+..++...+... ..+ ...+.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~~------~~~---~Fk~~--- 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRDN------EME---KFKEK--- 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHhh------hHH---HHHHh---
Confidence 356899999999999999999999996322222344432 233333443332110 111 11111
Q ss_pred cCcEEEEEcCCccccc---c-cccCCCCccccccccCCCCCcEEEEEecchhhh--------hhccCCCceEEccCCCHH
Q 046345 257 EKKVLIILDNIWTKLE---L-DVVGIPYGDVEKERKDDESGCTIILTSRNRDLL--------EKDMKSQKNFLIEVLSKD 324 (1462)
Q Consensus 257 ~k~~LlVlDdv~~~~~---~-~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~--------~~~~~~~~~~~l~~L~~~ 324 (1462)
..-=++++||++.... | +.+...+..+ ...|..||+|++..... ..+...+-.+++++.+.+
T Consensus 174 y~~dlllIDDiq~l~gk~~~qeefFh~FN~l------~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e 247 (408)
T COG0593 174 YSLDLLLIDDIQFLAGKERTQEEFFHTFNAL------LENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDE 247 (408)
T ss_pred hccCeeeechHhHhcCChhHHHHHHHHHHHH------HhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHH
Confidence 1222899999976422 1 2222222222 23455899999754332 123445568999999999
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC----chHHHHHHHHHh--cC--CHHHHHHHHHHHhcC
Q 046345 325 EALQLFECIVGDSAKTSAIQPIADEIVERCEGL----PVALSTIANALK--SK--SLDFWKDALYRLRSS 386 (1462)
Q Consensus 325 ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl----Plai~~~~~~l~--~~--~~~~w~~~~~~l~~~ 386 (1462)
....++.+.+..... .-.++++.-|++..... .-|+..+..+-. ++ +.+.-..+++.+...
T Consensus 248 ~r~aiL~kka~~~~~-~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 248 TRLAILRKKAEDRGI-EIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcc
Confidence 999999987742211 11245555566555443 233333222221 22 566666666655443
No 306
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.58 E-value=0.0043 Score=67.34 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=24.9
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 24 i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 24 ISAGE--FVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 33556 999999999999999999998753
No 307
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0045 Score=68.21 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=25.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.+++...
T Consensus 23 i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 23 VRRGE--ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 44566 999999999999999999998764
No 308
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.57 E-value=0.0018 Score=71.76 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=27.1
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 18 ~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 18 HNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred eeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333344566 999999999999999999998763
No 309
>PRK10908 cell division protein FtsE; Provisional
Probab=96.57 E-value=0.005 Score=67.22 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=25.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 25 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 25 MRPGE--MAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 44566 999999999999999999998763
No 310
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.55 E-value=0.032 Score=72.12 Aligned_cols=102 Identities=21% Similarity=0.269 Sum_probs=60.2
Q ss_pred ccchhHHHHHHHHHHhcc---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 228 (1462)
.++|.++.++.+...+.. ....++.++|+.|+|||++|+.+++... ...+.++.+.-.+.. .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----c
Confidence 467888888888877762 1234688999999999999999999772 234555554422211 1
Q ss_pred HHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccc
Q 046345 229 LAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
+...+|....-.. .+....+.+.+.....-+++||+++..
T Consensus 526 ~~~lig~~~gyvg--~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYVG--FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCcc--cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1222222211001 111222334444345569999999754
No 311
>PRK12377 putative replication protein; Provisional
Probab=96.55 E-value=0.052 Score=59.27 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=46.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
...+.++|..|+|||+||.++++..... ...++++++. ++...+-..... .. ....+.+.+ .
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~----~~----~~~~~l~~l--~ 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN----GQ----SGEKFLQEL--C 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc----cc----hHHHHHHHh--c
Confidence 3578999999999999999999998632 2345666543 444444433211 01 112334444 4
Q ss_pred CcEEEEEcCCcc
Q 046345 258 KKVLIILDNIWT 269 (1462)
Q Consensus 258 k~~LlVlDdv~~ 269 (1462)
+.=|||+||+..
T Consensus 163 ~~dLLiIDDlg~ 174 (248)
T PRK12377 163 KVDLLVLDEIGI 174 (248)
T ss_pred CCCEEEEcCCCC
Confidence 566999999944
No 312
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.55 E-value=0.015 Score=61.24 Aligned_cols=89 Identities=22% Similarity=0.268 Sum_probs=58.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCCCC---CcChHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ-TPDHQKIQDKLAFDLGMEFGL---NENTFQKAYRLCER 253 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 253 (1462)
+++++++|+.|+||||.+..++.....+ -..+..++... .....+-++..++.++.+... ..+..+...+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4699999999999999999999988644 44577777653 345667778888888876431 22334444444454
Q ss_pred HHccCcEEEEEcCCc
Q 046345 254 LKKEKKVLIILDNIW 268 (1462)
Q Consensus 254 l~~~k~~LlVlDdv~ 268 (1462)
....+.=++++|=+.
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 433333478888764
No 313
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.55 E-value=0.0086 Score=64.82 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=24.3
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++....
T Consensus 23 ~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 23 DGE--IVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred CCc--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 456 999999999999999999998764
No 314
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.00063 Score=75.21 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 18 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 18 LDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred eeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 333333344566 999999999999999999998763
No 315
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.54 E-value=0.0023 Score=71.10 Aligned_cols=37 Identities=19% Similarity=0.431 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 17 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 17 ALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcC
Confidence 3444444444666 999999999999999999988653
No 316
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.53 E-value=0.0022 Score=69.88 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 17 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 17 AVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444443344566 999999999999999999998763
No 317
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.53 E-value=0.0018 Score=71.51 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=27.6
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 19 l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 19 LKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred eeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 333333344566 999999999999999999998753
No 318
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.53 E-value=0.0021 Score=69.72 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=24.9
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 23 i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 23 VKKGE--VVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 34566 999999999999999999998764
No 319
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.53 E-value=0.0019 Score=70.97 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 15 ILRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EecceeeEECCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444444445666 999999999999999999998764
No 320
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.13 Score=64.18 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=63.9
Q ss_pred ccchhHHHHHHHHHHhc---------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAK---------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~---------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 228 (1462)
.++|.++.++.+...+. +....+...+|+.|||||.||+.++...-. .-+..+-++.|+.... ..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg--~e~aliR~DMSEy~Ek----Hs 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG--DEQALIRIDMSEYMEK----HS 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC--CCccceeechHHHHHH----HH
Confidence 46799999999998886 234567888999999999999999998831 1134444444432211 12
Q ss_pred HHHHhCCCCCCCcChHHHHHHHHHHHHccCcE-EEEEcCCccc
Q 046345 229 LAFDLGMEFGLNENTFQKAYRLCERLKKEKKV-LIILDNIWTK 270 (1462)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~ 270 (1462)
+.+-+|.+++-...++ --.+.+..+ .++| +++||+++..
T Consensus 566 VSrLIGaPPGYVGyee--GG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 566 VSRLIGAPPGYVGYEE--GGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHhCCCCCCceecc--ccchhHhhh-cCCCeEEEechhhhc
Confidence 3333444433111111 123344443 5666 8888999764
No 321
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.52 E-value=0.019 Score=74.41 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=96.8
Q ss_pred ccccchhHHHHHHHHHHhcc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...+.|.++.++.+.+.+.- ...+-+.++|++|+|||++|+.+++... ..| +.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeE---EEEecH-----
Confidence 34577888888888776531 2235788999999999999999999773 222 222211
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---------ccCCCCccccccccCCCCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---------VVGIPYGDVEKERKDDESG 293 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~~~~~g 293 (1462)
.+... . .....+....+++......+.+|++||++....-. .....+..+.+.+ ...+
T Consensus 247 -~i~~~-------~---~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l--~~~~ 313 (733)
T TIGR01243 247 -EIMSK-------Y---YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL--KGRG 313 (733)
T ss_pred -HHhcc-------c---ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc--ccCC
Confidence 11100 0 01123344455555545677899999986531100 0000011111111 1223
Q ss_pred cEEEE-Eecchhhhhhcc---C-CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchH
Q 046345 294 CTIIL-TSRNRDLLEKDM---K-SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVA 360 (1462)
Q Consensus 294 s~Ilv-Ttr~~~v~~~~~---~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 360 (1462)
..++| ||.......... + -...+.+...+.++-.+++........... ......+++.+.|.--|
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCHH
Confidence 33444 554433221111 1 134688888899998888886653221111 12356688888886543
No 322
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.52 E-value=0.035 Score=71.98 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=97.9
Q ss_pred cccchhHHHHHHHHHHhc-------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 157 EAFDSRMKVFQDVVEAAK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~-------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
..+.|.+...+.+.+.+. -...+-+.++|++|+|||++|+++++... ..| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----H
Confidence 445676666666655443 12334688999999999999999999873 232 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccc-------cCCCCcccccccc--CCCCCc
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDV-------VGIPYGDVEKERK--DDESGC 294 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~-------~~~~~~~l~~~~~--~~~~gs 294 (1462)
++ ... .. ...+..+..++.......+.+|++|+++....-.. .......++..+. ....+.
T Consensus 522 ~l----~~~---~v---Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 EI----LSK---WV---GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HH----hhc---cc---CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 110 01 11234455666666567889999999865311000 0000000111110 022345
Q ss_pred EEEEEecchhhhhhcc----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 295 TIILTSRNRDLLEKDM----KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 295 ~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
.||.||...+...... .-...+.+...+.++-.++|+.+.......++ .....+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED--VDLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHcCCCC
Confidence 5666776665542221 22457899999999999999877643221111 12456777787754
No 323
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.044 Score=63.09 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=87.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHH---HHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQK---AYRLCER 253 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~l~~~ 253 (1462)
....+.+.|++|+|||+||..++... .|..+--++...-. ..++... +..+++.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~mi-------------------G~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMI-------------------GLSESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHcc-------------------CccHHHHHHHHHHHHHH
Confidence 45577899999999999999998765 45554333321110 1122222 2233332
Q ss_pred HHccCcEEEEEcCCcccccccccCCCCcccccc-----ccC-CCCCcE--EEEEecchhhhhhccCC----CceEEccCC
Q 046345 254 LKKEKKVLIILDNIWTKLELDVVGIPYGDVEKE-----RKD-DESGCT--IILTSRNRDLLEKDMKS----QKNFLIEVL 321 (1462)
Q Consensus 254 l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~-----~~~-~~~gs~--IlvTtr~~~v~~~~~~~----~~~~~l~~L 321 (1462)
--+..--.||+||++...||-.++.-+..+.-. +.. ...|-| |+-||....+.. .++- ...|.+..+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCcc
Confidence 223566799999999999998887655432111 111 223444 444666666662 2221 247899988
Q ss_pred CH-HHHHHHHHHHhCCCCCCCCchHHHHHHHHHc
Q 046345 322 SK-DEALQLFECIVGDSAKTSAIQPIADEIVERC 354 (1462)
Q Consensus 322 ~~-~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~ 354 (1462)
+. ++..+.+...- .-.+.+.+.++.+.+.+|
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 87 77777776543 112233445566666555
No 324
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.51 E-value=0.0018 Score=72.24 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=26.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++..
T Consensus 17 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 17 LRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCC
Confidence 344443344566 9999999999999999999997
No 325
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.02 Score=66.90 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=81.1
Q ss_pred cchhHHHHHHHHHHhc-cCCceE-EEEEecCCCcHHHHHHHHHHHHhhcc-------------------CCCeEEEEEec
Q 046345 159 FDSRMKVFQDVVEAAK-DDKLNI-IGVYGMGGVGKTTLVKQVAKQVMEDK-------------------SFDKVVMAEVT 217 (1462)
Q Consensus 159 ~~gr~~~~~~l~~~l~-~~~~~v-v~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~ 217 (1462)
++|.+....++..+.. .++.+. +.++|++|+||||+|..+++...-.. ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566777777887777 444444 99999999999999999999884221 11233444443
Q ss_pred CCCC---HHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--ccccCCCCccccccccCCCC
Q 046345 218 QTPD---HQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDES 292 (1462)
Q Consensus 218 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~ 292 (1462)
.... ..+..+++.+....... .++.-++|+|+++.... -.++..... ....
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lE-------ep~~ 138 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLE-------EPPK 138 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhc-------cCCC
Confidence 3322 22223333322222111 25678999999986522 222211111 1456
Q ss_pred CcEEEEEecchhhh-hhccCCCceEEccCCCHHH
Q 046345 293 GCTIILTSRNRDLL-EKDMKSQKNFLIEVLSKDE 325 (1462)
Q Consensus 293 gs~IlvTtr~~~v~-~~~~~~~~~~~l~~L~~~e 325 (1462)
.+.+|++|.+..-. .....+...+++.+.+..+
T Consensus 139 ~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 139 NTRFILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred CeEEEEEcCChhhccchhhhcceeeecCCchHHH
Confidence 77888888754333 2223344567777644333
No 326
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0053 Score=68.01 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=24.8
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 24 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 24 IAKGE--FLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 33566 999999999999999999998754
No 327
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.50 E-value=0.0073 Score=68.88 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=27.3
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++.-..
T Consensus 24 ~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 24 DNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred eeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCC
Confidence 33333344566 999999999999999999998753
No 328
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.041 Score=64.61 Aligned_cols=179 Identities=13% Similarity=0.186 Sum_probs=98.2
Q ss_pred ccccchhHHHHHHHHHHhc---c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 156 YEAFDSRMKVFQDVVEAAK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
...+-|-++.+.++.+.+. . ...+=|.++|++|+|||.||++++++..+ . ++.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--P-----f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--P-----FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--c-----eEeecch----
Confidence 4456677777777666553 1 23456789999999999999999999842 2 3333322
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccc---cc-----c-----ccCCCCccccccccCC
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKL---EL-----D-----VVGIPYGDVEKERKDD 290 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~-----~-----~~~~~~~~l~~~~~~~ 290 (1462)
+|...+. ...++.++.++..-....++++++|+++... +| + .+......+-.. ...
T Consensus 258 ----eivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~ 326 (802)
T KOG0733|consen 258 ----EIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE-KTK 326 (802)
T ss_pred ----hhhcccC------cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc-ccC
Confidence 1222111 2245677788887778899999999987531 11 0 111111110000 001
Q ss_pred CCCcEEEEEecchhhhhhc---cCC-CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 291 ESGCTIILTSRNRDLLEKD---MKS-QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 291 ~~gs~IlvTtr~~~v~~~~---~~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
+.+.-||=+|..++..... .+. .+.|.+..-+...-.+++...+..-.....+ ..++||+..-|.-
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~--d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF--DFKQLAKLTPGFV 396 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc--CHHHHHhcCCCcc
Confidence 2333333344444443211 122 3478888778777777777666322111111 1456777766653
No 329
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.49 E-value=0.0078 Score=63.55 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=24.3
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
.+. +++++|++|+||||+.+++-....+
T Consensus 49 ~G~--ivgflGaNGAGKSTtLKmLTGll~p 76 (325)
T COG4586 49 KGE--IVGFLGANGAGKSTTLKMLTGLLLP 76 (325)
T ss_pred CCc--EEEEEcCCCCcchhhHHHHhCcccc
Confidence 455 9999999999999999999887744
No 330
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.49 E-value=0.01 Score=65.58 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=64.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCC-CCCC------CcChHHHH
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGM-EFGL------NENTFQKA 247 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~------~~~~~~~~ 247 (1462)
+++..-++|+|++|+|||||++.++...... .+.+++.-...... +-..+++..... .... ..+.....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchHH
Confidence 4555689999999999999999999888432 22333321111000 111233322211 1000 01111223
Q ss_pred HHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 248 YRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 248 ~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
..+...+..-.+-++|+|++...+.+..+... ...|..||+|||...+.
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~----------~~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEA----------LHAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHH----------HhCCCEEEEEechhHHH
Confidence 33444444457889999999776555443221 12477899999976653
No 331
>PRK13409 putative ATPase RIL; Provisional
Probab=96.49 E-value=0.0046 Score=77.17 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=72.7
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEE--E---ecCC------CCHHHH-------------HHH
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMA--E---VTQT------PDHQKI-------------QDK 228 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv--~---~~~~------~~~~~~-------------~~~ 228 (1462)
+..++ +++|+|++|+|||||++.++....... +.+++ . +.+. .++.+. ..+
T Consensus 362 i~~Ge--iv~l~G~NGsGKSTLlk~L~Gl~~p~~---G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 436 (590)
T PRK13409 362 IYEGE--VIGIVGPNGIGKTTFAKLLAGVLKPDE---GEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSE 436 (590)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHH
Confidence 34555 999999999999999999998764321 11111 1 1111 122221 123
Q ss_pred HHHHhCCCCC-----CCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 229 LAFDLGMEFG-----LNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 229 i~~~l~~~~~-----~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
+++.++.... ..-+.-+++..........++-+++||++.+..|..........+.++ . ...|..||++||+.
T Consensus 437 ~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l-~-~~~g~tviivsHD~ 514 (590)
T PRK13409 437 IIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRI-A-EEREATALVVDHDI 514 (590)
T ss_pred HHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-H-HhCCCEEEEEeCCH
Confidence 3333443211 011222333333333334678899999999887765443222221111 1 12366799999998
Q ss_pred hhhhhccCCCceEEcc
Q 046345 304 DLLEKDMKSQKNFLIE 319 (1462)
Q Consensus 304 ~v~~~~~~~~~~~~l~ 319 (1462)
..+.. -+.+++.++
T Consensus 515 ~~~~~--~aDrvivl~ 528 (590)
T PRK13409 515 YMIDY--ISDRLMVFE 528 (590)
T ss_pred HHHHH--hCCEEEEEc
Confidence 77621 233444443
No 332
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.48 E-value=0.0037 Score=69.44 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=26.4
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 19 ~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 19 FDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 33333334566 99999999999999999999864
No 333
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.48 E-value=0.013 Score=62.88 Aligned_cols=38 Identities=16% Similarity=0.380 Sum_probs=29.2
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++.....
T Consensus 20 il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 20 TLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred eeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCC
Confidence 3344444444666 9999999999999999999997643
No 334
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0043 Score=61.80 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.0
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
..+...+..++ .+.|.|++|+|||||.+.++.-.++
T Consensus 19 ~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p 54 (209)
T COG4133 19 SDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRP 54 (209)
T ss_pred cceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCC
Confidence 33444455677 8999999999999999999998854
No 335
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.47 E-value=0.0054 Score=68.38 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=24.7
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++ +++|+|++|+|||||++.+++...
T Consensus 48 ~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 48 YEGD--VIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhCCcC
Confidence 3556 999999999999999999999764
No 336
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.47 E-value=0.0077 Score=77.29 Aligned_cols=188 Identities=17% Similarity=0.198 Sum_probs=96.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhc--c------------CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCc
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMED--K------------SFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNE 241 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~--~------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 241 (1462)
++.+++.|.|+++.||||+.+.++-..-.. + .|+. ++..++...+...-...+.
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS----------- 392 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFS----------- 392 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHH-----------
Confidence 345689999999999999999997653110 1 1111 2233332222211111111
Q ss_pred ChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCc--eEEcc
Q 046345 242 NTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQK--NFLIE 319 (1462)
Q Consensus 242 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~--~~~l~ 319 (1462)
........+...+ .++-|+++|++....+...-......+.+++ ...|+.+|+|||+.+.......... ...+.
T Consensus 393 ~~m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 393 GHMTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred HHHHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 0111222233333 4778999999987655432211111122222 2247899999999877632222111 11221
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 046345 320 VLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALKSKSLDFWKDALYRLRSS 386 (1462)
Q Consensus 320 ~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~ 386 (1462)
. +. +......+...+. ....-|-+||+++ |+|-.|..-|..+-......+..++.++...
T Consensus 469 ~-d~-~~l~~~Ykl~~G~----~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 469 F-DE-ETLRPTYRLLIGI----PGKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEEL 528 (782)
T ss_pred E-ec-CcCcEEEEEeeCC----CCCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 1 11 1111101111111 1234577888887 7888888878777666555667777776553
No 337
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.008 Score=69.13 Aligned_cols=121 Identities=18% Similarity=0.204 Sum_probs=67.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCe--------------EEEEEecC----------CCCHHHHHHHHHHHhCC
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDK--------------VVMAEVTQ----------TPDHQKIQDKLAFDLGM 235 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~--------------~~wv~~~~----------~~~~~~~~~~i~~~l~~ 235 (1462)
.+++||.+|.||||+.+.+..+......... +-|.+..- .-..++-++.-+..+|+
T Consensus 392 Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl 471 (582)
T KOG0062|consen 392 RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGL 471 (582)
T ss_pred hhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCC
Confidence 6899999999999999999998753222110 11110000 00011112222223343
Q ss_pred CCCCC------cChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 236 EFGLN------ENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 236 ~~~~~------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
..+.. -+.-+..+-.+..+.-.++.|||||++.+..|.+.+...-..+. .-.|. ||+.|++.+..
T Consensus 472 ~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~-----~F~GG-Vv~VSHd~~fi 542 (582)
T KOG0062|consen 472 SGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK-----NFNGG-VVLVSHDEEFI 542 (582)
T ss_pred CchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH-----hcCCc-EEEEECcHHHH
Confidence 33211 12223444455555457899999999999988776643322221 12455 78888888775
No 338
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.46 E-value=0.009 Score=65.52 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=24.2
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++....
T Consensus 11 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGE--VLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 455 999999999999999999999765
No 339
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.46 E-value=0.0031 Score=69.16 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 26 l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 26 LTGVELVVKRGE--TIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCC
Confidence 333333344566 999999999999999999998764
No 340
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.0039 Score=67.22 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=28.4
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
++.+.-.+..++ .++|+|.+|+|||||++.+..-...
T Consensus 20 l~~v~~~i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 20 LKDVSLEIEKGE--RVLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred eeeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCcCcC
Confidence 334443344566 9999999999999999999987754
No 341
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.45 E-value=0.0085 Score=64.13 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=29.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEe
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEV 216 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~ 216 (1462)
.++|+|..|+||||++..+.... ...|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~--~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL--RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh--cccCCEEEEEec
Confidence 67899999999999999999887 467888877754
No 342
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.45 E-value=0.0039 Score=69.47 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 18 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 18 VLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccCC
Confidence 3444444444666 999999999999999999998753
No 343
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.031 Score=63.99 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=80.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhc---------------------cCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMED---------------------KSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~---------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
.-.+.+.++|+.|+||||+|+.++....-. .|.|. .++.-..... .-+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~-~~~~p~~~~~----------~~g 87 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDF-YEITPLSDEP----------ENG 87 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEEecccccc----------ccc
Confidence 334578899999999999999999987311 11221 1221100000 000
Q ss_pred CCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEecchhhh-h
Q 046345 235 MEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-E 307 (1462)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~ 307 (1462)
.. . ..-..+.++.+.+.+. .+++-++|+|++..... ...+...+.+ ...++.+|++|++.... .
T Consensus 88 ~~-~-~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEe-------p~~~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 88 RK-L-LQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEE-------PPPQVVFLLVSHAADKVLP 158 (325)
T ss_pred cc-C-CCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHh-------CcCCCEEEEEeCChHhChH
Confidence 00 0 0012334444444442 24445556666654321 1111111111 22456788888876543 2
Q ss_pred hccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchH
Q 046345 308 KDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVA 360 (1462)
Q Consensus 308 ~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 360 (1462)
........+.+.+++.+++.+.+.+. +. +. .+ . .+..++|.|+.
T Consensus 159 ti~SRc~~~~~~~~~~~~~~~~L~~~-~~----~~-~~--~-~l~~~~g~p~~ 202 (325)
T PRK08699 159 TIKSRCRKMVLPAPSHEEALAYLRER-GV----AE-PE--E-RLAFHSGAPLF 202 (325)
T ss_pred HHHHHhhhhcCCCCCHHHHHHHHHhc-CC----Cc-HH--H-HHHHhCCChhh
Confidence 33444568999999999998888654 21 11 11 1 23568898854
No 344
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.43 E-value=0.0088 Score=65.52 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.+++...
T Consensus 10 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGE--FISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 455 999999999999999999998764
No 345
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.42 E-value=0.025 Score=59.74 Aligned_cols=206 Identities=11% Similarity=0.148 Sum_probs=112.2
Q ss_pred cchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh----ccCCCeEEEEEecCC-C-------------
Q 046345 159 FDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME----DKSFDKVVMAEVTQT-P------------- 220 (1462)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~-~------------- 220 (1462)
..++++....+......++.+-..++|++|.||-|.+..+.+...- +-.-+...|.+-+.+ .
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 4566666666666555677889999999999999999888887732 112233444443332 0
Q ss_pred -------CHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcE-EEEEcCCccc--ccccccCCCCccccccccCC
Q 046345 221 -------DHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKV-LIILDNIWTK--LELDVVGIPYGDVEKERKDD 290 (1462)
Q Consensus 221 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~ 290 (1462)
.-+.+..++++.++.... + .....+.| ++|+-+++.. +.-.++.- .+. ..
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q-----------i--e~~~qr~fKvvvi~ead~LT~dAQ~aLRR---TME----kY 154 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ-----------I--ETQGQRPFKVVVINEADELTRDAQHALRR---TME----KY 154 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc-----------h--hhccccceEEEEEechHhhhHHHHHHHHH---HHH----HH
Confidence 111222223322211111 0 00012344 5666655442 11111111 111 14
Q ss_pred CCCcEEEEEecchhh-hhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc-hHHHHHHHHH
Q 046345 291 ESGCTIILTSRNRDL-LEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP-VALSTIANAL 368 (1462)
Q Consensus 291 ~~gs~IlvTtr~~~v-~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l 368 (1462)
...+|+|+...+-.- ........-.+++...+++|-...+.+.+.... -.--++++.+|+++++|.- .|+-++- ..
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~-l~lp~~~l~rIa~kS~~nLRrAllmlE-~~ 232 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG-LQLPKELLKRIAEKSNRNLRRALLMLE-AV 232 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc-ccCcHHHHHHHHHHhcccHHHHHHHHH-HH
Confidence 557777775443221 111223344789999999999999998874221 1112789999999999864 4443332 22
Q ss_pred h--------c-C--CHHHHHHHHHHHhcC
Q 046345 369 K--------S-K--SLDFWKDALYRLRSS 386 (1462)
Q Consensus 369 ~--------~-~--~~~~w~~~~~~l~~~ 386 (1462)
+ + . ...+|+-++.++...
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHH
Confidence 2 1 1 356899888876543
No 346
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.41 E-value=0.0058 Score=69.31 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.4
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+..++ +++|+|++|+|||||++.++...
T Consensus 30 i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 30 IEDGS--YTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34566 99999999999999999999865
No 347
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.41 E-value=0.0061 Score=68.19 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=27.4
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 22 ~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 22 KGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333344566 999999999999999999999864
No 348
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.41 E-value=0.002 Score=71.28 Aligned_cols=35 Identities=34% Similarity=0.459 Sum_probs=27.3
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 20 ~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 20 EDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred eeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333344566 999999999999999999999753
No 349
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.41 E-value=0.07 Score=63.31 Aligned_cols=88 Identities=25% Similarity=0.309 Sum_probs=52.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCCCC---cChHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-PDHQKIQDKLAFDLGMEFGLN---ENTFQKAYRLCE 252 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 252 (1462)
...+|.++|.+|+||||.|..++...... .+ .+..++.... ....+.+..++.+++.+.... .+..+.+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 45699999999999999999999888633 22 3444554321 223445566677766543311 122233334444
Q ss_pred HHHccCcEEEEEcCCc
Q 046345 253 RLKKEKKVLIILDNIW 268 (1462)
Q Consensus 253 ~l~~~k~~LlVlDdv~ 268 (1462)
... +. -++|+|...
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 442 22 578888874
No 350
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.40 E-value=0.0055 Score=68.66 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 28 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 28 ALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 4444444445667 99999999999999999999875
No 351
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.40 E-value=0.0024 Score=71.44 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 22 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 22 CRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 333433344566 999999999999999999998764
No 352
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.40 E-value=0.002 Score=72.61 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 16 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 16 VLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCC
Confidence 3444444444566 999999999999999999998653
No 353
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.32 Score=55.99 Aligned_cols=176 Identities=16% Similarity=0.213 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhccCC---------ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 163 MKVFQDVVEAAKDDK---------LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 163 ~~~~~~l~~~l~~~~---------~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
+..++++.+++...+ -|=..++||+|.|||++..++++... |+. .=..++...+.
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----ydI-ydLeLt~v~~n----------- 274 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----YDI-YDLELTEVKLD----------- 274 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----Cce-EEeeeccccCc-----------
Confidence 345566665555311 23567999999999999999999883 333 22222222111
Q ss_pred CCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccC-------------CCCcccccccc--CCCC-CcE-E
Q 046345 234 GMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVG-------------IPYGDVEKERK--DDES-GCT-I 296 (1462)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~-------------~~~~~l~~~~~--~~~~-gs~-I 296 (1462)
.+ ..+++.. ...+-+||+.|++...+...-. ..+..++.++- |... +-| |
T Consensus 275 ----------~d-Lr~LL~~--t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi 341 (457)
T KOG0743|consen 275 ----------SD-LRHLLLA--TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII 341 (457)
T ss_pred ----------HH-HHHHHHh--CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEE
Confidence 11 2222221 2566778888876543221110 01111111111 1222 224 5
Q ss_pred EEEecchhhhhhc-cCC---CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHH-HHhcC
Q 046345 297 ILTSRNRDLLEKD-MKS---QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIAN-ALKSK 371 (1462)
Q Consensus 297 lvTtr~~~v~~~~-~~~---~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~-~l~~~ 371 (1462)
++||...+....+ +.. ...+.+.-=+.+....||..+.+....+ .++.+|.+...|.-+.=+.+|. +|+.+
T Consensus 342 vFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 342 VFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 5677776655222 222 2368888889999999999998743322 3455555555555444444444 44444
No 354
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.40 E-value=0.0024 Score=71.24 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=25.1
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 23 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 23 VAAGE--KVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 44566 999999999999999999998764
No 355
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.40 E-value=0.024 Score=59.20 Aligned_cols=177 Identities=14% Similarity=0.228 Sum_probs=100.6
Q ss_pred cccchhHHHHHH---HHHHhcc------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHH
Q 046345 157 EAFDSRMKVFQD---VVEAAKD------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQD 227 (1462)
Q Consensus 157 ~~~~gr~~~~~~---l~~~l~~------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 227 (1462)
..++|.++...+ |++.|.+ -.++-|..+|++|.|||-+|+++++... ..|-. |. ..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~l~---vk---------at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPLLL---VK---------ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--CceEE---ec---------hHH
Confidence 456787765543 5566664 3467899999999999999999999884 22211 11 111
Q ss_pred HHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccc----------cccccCCCCccccccccCCCCCcEEE
Q 046345 228 KLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKL----------ELDVVGIPYGDVEKERKDDESGCTII 297 (1462)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~~~~~~~~l~~~~~~~~~gs~Il 297 (1462)
-|.+.+| +...++.+++++-.+..++++.+|+++... |...+..++-.-.+.+ ..+.|..-|
T Consensus 187 liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi-~eneGVvtI 258 (368)
T COG1223 187 LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGI-KENEGVVTI 258 (368)
T ss_pred HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCc-ccCCceEEE
Confidence 1222221 234556667777666889999999987531 1111111110000111 144566666
Q ss_pred EEecchhhhhhccCC--CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC
Q 046345 298 LTSRNRDLLEKDMKS--QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL 357 (1462)
Q Consensus 298 vTtr~~~v~~~~~~~--~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 357 (1462)
-.|.+.+.......+ ...++..--+.+|-.+++..++..-.-+ .+.-.+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp--v~~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP--VDADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc--cccCHHHHHHHhCCC
Confidence 666666665322222 3467777788899999998887421111 111245566666664
No 356
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.39 E-value=0.00068 Score=76.10 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 26 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 26 LLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred EEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCC
Confidence 4444444444566 999999999999999999998753
No 357
>PHA00729 NTP-binding motif containing protein
Probab=96.37 E-value=0.018 Score=60.94 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=29.1
Q ss_pred HHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 168 DVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 168 ~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++..+..++...+.|.|.+|+||||||..+++..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555666666789999999999999999999986
No 358
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.37 E-value=0.0082 Score=68.66 Aligned_cols=28 Identities=29% Similarity=0.543 Sum_probs=24.4
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++ +++|+|++|+|||||.+.++....
T Consensus 26 ~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~ 53 (301)
T TIGR03522 26 QKGR--IVGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred eCCe--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455 999999999999999999998764
No 359
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.37 E-value=0.0075 Score=67.97 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=27.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 21 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 21 LKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred eeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCC
Confidence 334443344566 999999999999999999998754
No 360
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.37 E-value=0.0017 Score=67.85 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=59.7
Q ss_pred hcCCcceEEEecCCCCC-----CCCcccCCCCcCcEEEecCcccC---C---------ccccccccCCcEEEecCCCCC-
Q 046345 567 EGTEGLKVLDFTGIHFS-----SLPSSLGRLTSLQTLCLHWCELE---D---------IAIVGQLKKLEILSFRDSDIK- 628 (1462)
Q Consensus 567 ~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~---~---------~~~i~~L~~L~~L~L~~~~i~- 628 (1462)
..+..+..+|||+|.|. .+...|.+-.+|+.-+++.-... + .+.+-++++|+..+||.|-+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44778888999999885 35566777888888888865321 1 256677888999999988655
Q ss_pred ccch----hhccccccCEEccCCc
Q 046345 629 ELPL----EIGLLTRLSLLDLSDC 648 (1462)
Q Consensus 629 ~lp~----~i~~L~~L~~L~L~~~ 648 (1462)
..|+ -|++-+.|.||.+++|
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC
Confidence 4443 4567788888888887
No 361
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.36 E-value=0.017 Score=57.42 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+.++..|+|-+|+|||||...++-..
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhc
Confidence 45689999999999999999988655
No 362
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.36 E-value=0.0013 Score=67.95 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=40.1
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
+.+....||.-..+..+.-.+..++ +++++|++|+||||+.+.++...+.
T Consensus 6 v~~l~~~YG~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~~~ 55 (237)
T COG0410 6 VENLSAGYGKIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLVRP 55 (237)
T ss_pred EEeEeecccceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4455666777666777766666777 9999999999999999999998854
No 363
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.36 E-value=0.002 Score=71.95 Aligned_cols=37 Identities=22% Similarity=0.530 Sum_probs=28.6
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 17 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 17 LLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444443444566 999999999999999999999764
No 364
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.35 E-value=0.0042 Score=70.51 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 23 ~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 23 FDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred eeeEEEEcCCC--EEEEECCCCChHHHHHHHHhcCCC
Confidence 33333344566 999999999999999999998764
No 365
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0051 Score=66.55 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.4
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++ +++|+|++|+|||||++.++....
T Consensus 22 ~~Ge--~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 22 AQGE--ITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3555 999999999999999999998764
No 366
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.35 E-value=0.00084 Score=75.07 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=27.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 17 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 17 VDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred EeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCC
Confidence 344443344566 999999999999999999998753
No 367
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0098 Score=64.47 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=23.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+++|+|++|+|||||++.++....
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 5999999999999999999998764
No 368
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.33 E-value=0.0015 Score=69.90 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+++|+|++|.||||+.+.++...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH
Confidence 599999999999999999999544
No 369
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.33 E-value=0.009 Score=67.33 Aligned_cols=29 Identities=31% Similarity=0.443 Sum_probs=24.7
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 30 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 30 VPGGS--IAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33566 999999999999999999998753
No 370
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.32 E-value=0.004 Score=68.25 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.7
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+..++ +++|+|++|+|||||++.++...
T Consensus 23 i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGE--ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 34566 99999999999999999999876
No 371
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.011 Score=67.17 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=25.1
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|.+|+|||||++.++....
T Consensus 30 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 30 IPSGS--YVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhcCCC
Confidence 44566 999999999999999999998764
No 372
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.31 E-value=0.0041 Score=60.29 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=26.9
Q ss_pred HHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 168 DVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 168 ~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+.-.+..++ .++|.|++|+|||||.+.++.-..
T Consensus 21 ~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 21 NISLSVRAGE--FIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred ceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccC
Confidence 3333344566 899999999999999999998764
No 373
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.28 E-value=0.0092 Score=69.43 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=25.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 28 i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 28 IPAGE--IFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhCCCC
Confidence 34566 999999999999999999998764
No 374
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.28 E-value=0.0032 Score=69.88 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=27.0
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++..
T Consensus 16 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 16 LKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCC
Confidence 344443344566 9999999999999999999986
No 375
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.26 E-value=0.008 Score=67.96 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=25.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|.+|+|||||++.+++...
T Consensus 30 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 30 VKQGE--WLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred EeCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 34566 999999999999999999998763
No 376
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.014 Score=64.52 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=25.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.+++...
T Consensus 24 i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 24 IPAGK--KVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcccC
Confidence 33556 999999999999999999998764
No 377
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.26 E-value=0.0021 Score=71.94 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 21 l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 21 VNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred EEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcC
Confidence 344443344565 999999999999999999998754
No 378
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0029 Score=70.23 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=27.5
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 17 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 17 LKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcC
Confidence 333333344566 999999999999999999998653
No 379
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.005 Score=68.62 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=32.6
Q ss_pred cccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 157 EAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
...+|....++.+.-.+..++ +++|+|.+|+|||||.+.++....
T Consensus 17 ~~~~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 17 YLYINDKAILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred EEecCCceeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 333454444455554444666 999999999999999999998754
No 380
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.25 E-value=0.0015 Score=80.94 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 19 ~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 19 ALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred EeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444443344566 999999999999999999998763
No 381
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.25 E-value=0.005 Score=69.93 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=28.2
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||.+.++....
T Consensus 23 l~~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13641 23 LDNISFELEEGS--FVALVGHTGSGKSTLMQHFNALLK 58 (287)
T ss_pred eeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 444443344666 999999999999999999998764
No 382
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.24 E-value=0.0055 Score=68.78 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 19 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 19 ALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred EEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccCC
Confidence 3444444444566 999999999999999999998764
No 383
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.24 E-value=0.004 Score=77.77 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=75.9
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc---CCC---eEEEEEecC------CC
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK---SFD---KVVMAEVTQ------TP 220 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f~---~~~wv~~~~------~~ 220 (1462)
..+....+|....++.+.-.+..++ +++|+|++|+|||||++.++....... .|+ .+.++.-.. ..
T Consensus 322 ~~~l~~~~~~~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 322 VENLTKGFDNGPLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDL 399 (530)
T ss_pred EEeeEEeeCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCC
Confidence 3344444454444555544444666 999999999999999999998753221 111 122221110 01
Q ss_pred CHHH-------------HHHHHHHHhCCCCC------CCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCc
Q 046345 221 DHQK-------------IQDKLAFDLGMEFG------LNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYG 281 (1462)
Q Consensus 221 ~~~~-------------~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~ 281 (1462)
++.+ ....++..++.... ..-+.-++.........-.++-++++|++.+..|.........
T Consensus 400 t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 400 TLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479 (530)
T ss_pred cHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 1221 11233344443210 0112222222222222236778999999998877654332222
Q ss_pred cccccccCCCCCcEEEEEecchhhh
Q 046345 282 DVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 282 ~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.+.+ . .+ .||++||+...+
T Consensus 480 ~l~~----~-~~-tvi~vsHd~~~~ 498 (530)
T PRK15064 480 ALEK----Y-EG-TLIFVSHDREFV 498 (530)
T ss_pred HHHH----C-CC-EEEEEeCCHHHH
Confidence 2211 2 23 699999998776
No 384
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.24 E-value=0.005 Score=67.63 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=28.4
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 21 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 21 LDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred ecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 444444445666 999999999999999999998753
No 385
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0067 Score=67.75 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=33.5
Q ss_pred CCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+....++....++.+.-.+..++ +++|+|.+|+|||||++.++....
T Consensus 11 ~~l~~~~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 11 ENLNLFYTDFKALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred eeeEEEeCCceeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence 333333343334455554455677 999999999999999999998764
No 386
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.23 E-value=0.011 Score=62.83 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|.+|+|||||++.++....
T Consensus 25 ~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 25 PSA--ITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CCc--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 455 999999999999999999999764
No 387
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.011 Score=63.83 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+++|+|++|+|||||++.++....
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999998653
No 388
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.011 Score=63.15 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=25.1
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 30 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGE--MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCc--EEEEECCCCCCHHHHHHHhcccCC
Confidence 33555 999999999999999999999865
No 389
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.013 Score=72.77 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=99.5
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCC-----eEEEEEecCCCCHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFD-----KVVMAEVTQTPDHQKIQDKL 229 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-----~~~wv~~~~~~~~~~~~~~i 229 (1462)
....++||++++++++..|....-.--.++|.+|||||++|.-++.+...++-.. .++-.+ +
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD-------------~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD-------------L 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------H
Confidence 3456789999999999999854333456899999999999999999985432221 111111 1
Q ss_pred HHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--------ccccCCCCccccccccCCCCCcEEEEEec
Q 046345 230 AFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--------LDVVGIPYGDVEKERKDDESGCTIILTSR 301 (1462)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------~~~~~~~~~~l~~~~~~~~~gs~IlvTtr 301 (1462)
..-.... .-....+++...+.+.+.+.++.+|.+|++..... .++-...-|.+ ..+.--.|=.||-
T Consensus 235 g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-----ARGeL~~IGATT~ 308 (786)
T COG0542 235 GSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-----ARGELRCIGATTL 308 (786)
T ss_pred HHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-----hcCCeEEEEeccH
Confidence 1111111 11234567888888888777799999999865411 22211111221 1222233556776
Q ss_pred chhh--h---hhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 302 NRDL--L---EKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 302 ~~~v--~---~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
++.- . .........+.++.-+.+++...++...
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 5432 1 1123456789999999999999997654
No 390
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.0036 Score=68.82 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=28.6
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
++.+.-.+..++ +++|+|.+|+|||||++.++.....
T Consensus 16 l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 16 LDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred eccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 333433344566 9999999999999999999998743
No 391
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.011 Score=69.53 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=25.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 26 i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 26 IHEGE--FVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhCCCC
Confidence 34566 999999999999999999998764
No 392
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.21 E-value=0.0023 Score=70.60 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 20 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 20 ALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCC
Confidence 3444443344566 999999999999999999988653
No 393
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.00052 Score=71.74 Aligned_cols=80 Identities=28% Similarity=0.421 Sum_probs=41.1
Q ss_pred CCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCc-cccccccccceeec
Q 046345 592 LTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAP-NVISKLSRLEELYM 670 (1462)
Q Consensus 592 L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l 670 (1462)
|.+.+.|++.+|.+.++....++..|++|.|+-|+|+.+ ..+..+++|++|+|..| .+..+.. .-+.+|++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 344455555555555555555555566666665555555 23455556666665554 3333321 11445555555555
Q ss_pred cCc
Q 046345 671 GGS 673 (1462)
Q Consensus 671 ~~~ 673 (1462)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 443
No 394
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.21 E-value=0.005 Score=77.22 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=33.5
Q ss_pred Cccccch-hHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 155 DYEAFDS-RMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 155 ~~~~~~g-r~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+....+| ....++.+.-.+..++ +++|+|++|+|||||.+.+++...
T Consensus 11 ~l~~~y~~~~~il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 11 RVSKVVPPKKQILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred eEEEEeCCCCeeeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3333344 3334455554455677 999999999999999999999764
No 395
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.21 E-value=0.0096 Score=68.73 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=27.9
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++.-..+
T Consensus 22 ~~vsl~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~~p 57 (343)
T TIGR02314 22 NNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERP 57 (343)
T ss_pred eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 33333344566 9999999999999999999987643
No 396
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.037 Score=58.89 Aligned_cols=157 Identities=20% Similarity=0.273 Sum_probs=85.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
.+-|.++|++|.||+-||++|+.... . .|.+++.. ++....+ ...+..+..+++--+..
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----DLvSKWm----------GESEkLVknLFemARe~ 224 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----DLVSKWM----------GESEKLVKNLFEMAREN 224 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH----HHHHHHh----------ccHHHHHHHHHHHHHhc
Confidence 56889999999999999999999873 2 23444443 2222221 11345566677666678
Q ss_pred CcEEEEEcCCcccc---------cccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCC--CceEEccCCCHHHH
Q 046345 258 KKVLIILDNIWTKL---------ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKS--QKNFLIEVLSKDEA 326 (1462)
Q Consensus 258 k~~LlVlDdv~~~~---------~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~--~~~~~l~~L~~~ea 326 (1462)
|+-+|.+|+++..- ....++.-+---.+.......|.-|+=.|..+-+......+ .+.|.+ ||.+..|
T Consensus 225 kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~A 303 (439)
T KOG0739|consen 225 KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHA 303 (439)
T ss_pred CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHH
Confidence 99999999997431 11111111100001111234555566677776665322221 223444 4555554
Q ss_pred -HHHHHHHhCCCCCCCCchHHHHHHHHHccCC
Q 046345 327 -LQLFECIVGDSAKTSAIQPIADEIVERCEGL 357 (1462)
Q Consensus 327 -~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 357 (1462)
..+|+-++|+.... -.++-.++++++..|.
T Consensus 304 R~~MF~lhlG~tp~~-LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 304 RARMFKLHLGDTPHV-LTEQDFKELARKTEGY 334 (439)
T ss_pred hhhhheeccCCCccc-cchhhHHHHHhhcCCC
Confidence 45666666744322 2233455666666654
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.0031 Score=72.34 Aligned_cols=142 Identities=20% Similarity=0.290 Sum_probs=75.5
Q ss_pred CCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCe---EEEEEec------CC-----
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDK---VVMAEVT------QT----- 219 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~---~~wv~~~------~~----- 219 (1462)
.+..-.||-...+..-.-.|..+ +..++||.+|+|||||.+++++-.- ..|.. +.=..+. ..
T Consensus 84 ~~fdLa~G~k~LL~~a~L~L~~G--rRYGLvGrNG~GKsTLLRaia~~~v--~~f~veqE~~g~~t~~~~~~l~~D~~~~ 159 (582)
T KOG0062|consen 84 DNFDLAYGGKILLNKANLTLSRG--RRYGLVGRNGIGKSTLLRAIANGQV--SGFHVEQEVRGDDTEALQSVLESDTERL 159 (582)
T ss_pred eeeeeeecchhhhcCCceeeecc--cccceeCCCCCcHHHHHHHHHhcCc--CccCchhheeccchHHHhhhhhccHHHH
Confidence 34444566443333222222233 4899999999999999999999331 12211 1000000 00
Q ss_pred ------------CCHHHHHHHHHHHhCCCCCCCcC-------hHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCC
Q 046345 220 ------------PDHQKIQDKLAFDLGMEFGLNEN-------TFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPY 280 (1462)
Q Consensus 220 ------------~~~~~~~~~i~~~l~~~~~~~~~-------~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~ 280 (1462)
.+..++...++..+|...+.... .......+.+.+. .++=||+||++.+..|...+.+
T Consensus 160 dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf-~~pDlLLLDEPTNhLDv~av~W-- 236 (582)
T KOG0062|consen 160 DFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALF-AKPDLLLLDEPTNHLDVVAVAW-- 236 (582)
T ss_pred HHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHh-cCCCEEeecCCcccchhHHHHH--
Confidence 01223344455566654331110 1122233444443 5777999999999987655422
Q ss_pred ccccccccCCCCCcEEEEEecchhhh
Q 046345 281 GDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 281 ~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
+..|+.. -+..+||.|+++...
T Consensus 237 --Le~yL~t--~~~T~liVSHDr~FL 258 (582)
T KOG0062|consen 237 --LENYLQT--WKITSLIVSHDRNFL 258 (582)
T ss_pred --HHHHHhh--CCceEEEEeccHHHH
Confidence 2233332 236799999998776
No 398
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.20 E-value=0.016 Score=63.26 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=28.6
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 19 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 19 VLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred cccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCC
Confidence 3444444444666 999999999999999999998753
No 399
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.20 E-value=0.012 Score=66.32 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 25 l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 25 LKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 333333344566 999999999999999999998764
No 400
>PRK04132 replication factor C small subunit; Provisional
Probab=96.19 E-value=0.061 Score=68.49 Aligned_cols=152 Identities=11% Similarity=0.054 Sum_probs=91.3
Q ss_pred cCCCcHHHHHHHHHHHHhhccCC-CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEE
Q 046345 186 MGGVGKTTLVKQVAKQVMEDKSF-DKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIIL 264 (1462)
Q Consensus 186 ~~GvGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVl 264 (1462)
|.++||||+|..++++.-- ..+ ..++-++.++......+. ++...+....+ +...+..++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---------------cCCCCCEEEEE
Confidence 7899999999999998732 222 235666766654444333 22222111000 00124579999
Q ss_pred cCCcccc--cccccCCCCccccccccCCCCCcEEEEEecchhhh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCC
Q 046345 265 DNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTS 341 (1462)
Q Consensus 265 Ddv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~ 341 (1462)
|+++... ...++...+. .....+++|+++.+..-. .........+++.+++.++-...+...+.... -.
T Consensus 637 DEaD~Lt~~AQnALLk~lE-------ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~ 708 (846)
T PRK04132 637 DEADALTQDAQQALRRTME-------MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LE 708 (846)
T ss_pred ECcccCCHHHHHHHHHHhh-------CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CC
Confidence 9998763 3333322111 134566777766655433 22344456899999999999888887763211 11
Q ss_pred CchHHHHHHHHHccCCchHHH
Q 046345 342 AIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 342 ~~~~~~~~i~~~~~glPlai~ 362 (1462)
-.++....|++.++|-+..+.
T Consensus 709 i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 235678899999999775443
No 401
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0089 Score=66.76 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 21 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 21 ALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 4444444444666 99999999999999999999753
No 402
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.18 E-value=0.017 Score=64.38 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|.+|+|||||++.++....
T Consensus 19 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 19 VHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred ecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 333333344566 999999999999999999998764
No 403
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.18 E-value=0.27 Score=57.80 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=29.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEe
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEV 216 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~ 216 (1462)
+...+|.++|++|+||||+|..++...... .+ .+..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~ 136 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GF-KPCLVCA 136 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEcC
Confidence 346799999999999999999999877532 22 4455554
No 404
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.015 Score=65.61 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=27.4
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||.+.+++...
T Consensus 19 ~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 19 ENINLVIKKGE--YIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred eeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 33333344566 999999999999999999998754
No 405
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.17 E-value=0.11 Score=61.98 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=50.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ-TPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
++++++|++|+||||.+..++.....+.....+..+.... .....+-++..++.++..........+.... ...+ .
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~a-L~~L--~ 333 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLA-LSEL--R 333 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHH-HHhc--c
Confidence 5999999999999999999998875333223455555432 2233344555566666554322222222222 2233 2
Q ss_pred CcEEEEEcCCc
Q 046345 258 KKVLIILDNIW 268 (1462)
Q Consensus 258 k~~LlVlDdv~ 268 (1462)
....+++|-..
T Consensus 334 d~d~VLIDTaG 344 (484)
T PRK06995 334 NKHIVLIDTIG 344 (484)
T ss_pred CCCeEEeCCCC
Confidence 33477778764
No 406
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.17 E-value=0.025 Score=60.90 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=27.6
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 24 l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 24 LKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred ccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccC
Confidence 344433344566 999999999999999999998753
No 407
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.16 E-value=0.0066 Score=67.51 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=28.6
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.+.....
T Consensus 16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 16 ALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred eecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCC
Confidence 3444443444666 999999999999999999998764
No 408
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.0028 Score=73.85 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=27.8
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
+.+.-.+..++ +++|+|++|+|||||.+.++.-...
T Consensus 21 ~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaGl~~p 56 (356)
T PRK11650 21 KGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAGLERI 56 (356)
T ss_pred eeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCC
Confidence 33333344566 9999999999999999999997643
No 409
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.19 Score=59.38 Aligned_cols=132 Identities=17% Similarity=0.280 Sum_probs=83.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
..=|.++|++|+|||-||++|++... -.| +++... +++.... ...+..++.++++-+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag--~NF-----isVKGP----ELlNkYV----------GESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG--ANF-----ISVKGP----ELLNKYV----------GESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc--Cce-----EeecCH----HHHHHHh----------hhHHHHHHHHHHHhhcC
Confidence 34678999999999999999999883 444 333322 3322222 12345667788888789
Q ss_pred CcEEEEEcCCccccc-------c------cccCCCCccccccccCCCCCcEEEEEecchhhhhhcc---C-CCceEEccC
Q 046345 258 KKVLIILDNIWTKLE-------L------DVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDM---K-SQKNFLIEV 320 (1462)
Q Consensus 258 k~~LlVlDdv~~~~~-------~------~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~---~-~~~~~~l~~ 320 (1462)
-+++|.||+++.... | ..+..-+..+ ....|.-||-.|..+++...++ + -.+.+.|+.
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-----~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-----EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc-----ccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 999999999975311 1 1110011110 1335667777777666652221 1 134788888
Q ss_pred CCHHHHHHHHHHHhC
Q 046345 321 LSKDEALQLFECIVG 335 (1462)
Q Consensus 321 L~~~ea~~lf~~~~~ 335 (1462)
-+.+|-.++++..+.
T Consensus 679 Pn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 679 PNAEERVAILKTITK 693 (802)
T ss_pred CCHHHHHHHHHHHhc
Confidence 899999999998885
No 410
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.14 E-value=0.0056 Score=63.46 Aligned_cols=101 Identities=25% Similarity=0.312 Sum_probs=55.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEK 258 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 258 (1462)
.-+.++|..|+|||.||..+++..... . ..+.|++ ..+++..+-.. .. ... .....+.+. +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~-g-~~v~f~~------~~~L~~~l~~~----~~-~~~----~~~~~~~l~--~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK-G-YSVLFIT------ASDLLDELKQS----RS-DGS----YEELLKRLK--R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEE------HHHHHHHHHCC----HC-CTT----HCHHHHHHH--T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC-C-cceeEee------cCceecccccc----cc-ccc----hhhhcCccc--c
Confidence 479999999999999999999988642 2 2356665 34455554321 11 111 123344453 4
Q ss_pred cEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 259 KVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 259 ~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
-=|||+||+... .+|.. ..+-.+++.+-. ++ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~--~~l~~ii~~R~~--~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEA--ELLFEIIDERYE--RK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHH--HCTHHHHHHHHH--T--EEEEEESS-
T ss_pred ccEecccccceeeeccccc--ccchhhhhHhhc--cc-CeEeeCCCc
Confidence 458999998654 23322 112223333222 23 477788754
No 411
>PRK13409 putative ATPase RIL; Provisional
Probab=96.14 E-value=0.005 Score=76.82 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=31.5
Q ss_pred ccchhH-HHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 158 AFDSRM-KVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 158 ~~~gr~-~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.-||.. ..+..+. .+..++ +++|+|++|+|||||++.++....
T Consensus 81 ~~yg~~~~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 81 HRYGVNGFKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred EEecCCceeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCcc
Confidence 334542 2455554 455666 999999999999999999998754
No 412
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.14 E-value=0.012 Score=64.31 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=24.8
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 28 i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 28 IGKGE--IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 34566 999999999999999999998753
No 413
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.0085 Score=67.47 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=33.0
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+....++....++.+.-.+..++ +++|+|++|+|||||++.+++..
T Consensus 24 ~~~l~~~~~~~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 24 VKDLSIYYGEKRAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EEEEEEEeCCceeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence 3444444443334444444444666 99999999999999999999853
No 414
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0059 Score=67.12 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++....
T Consensus 24 ~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGE--RVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 555 999999999999999999998754
No 415
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.018 Score=63.30 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 19 l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 19 LKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred ccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcC
Confidence 344443344566 999999999999999999998764
No 416
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.016 Score=66.58 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=28.7
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|.+|+|||||++.+++...
T Consensus 41 ~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 41 ALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 4444444444566 999999999999999999998764
No 417
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.13 E-value=0.0027 Score=73.98 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=28.1
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
++.+.-.+..++ +++|+|++|+|||||.+.++.....
T Consensus 21 l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p 57 (362)
T TIGR03258 21 LDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAGFVKA 57 (362)
T ss_pred EeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 333333344566 9999999999999999999987644
No 418
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.12 E-value=0.012 Score=66.28 Aligned_cols=29 Identities=34% Similarity=0.609 Sum_probs=24.9
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 30 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 30 VPRGK--ITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33556 999999999999999999998764
No 419
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.12 E-value=0.0056 Score=68.35 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
.++.+.-.+..++ +++|+|.+|+|||||++.+++.
T Consensus 22 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 22 ILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCC
Confidence 3444444444666 9999999999999999999984
No 420
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.0044 Score=69.61 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=29.3
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 22 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 22 VAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred EeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCCC
Confidence 4455554455666 999999999999999999998764
No 421
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.12 E-value=0.0047 Score=76.64 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=33.4
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+....+|....++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 10 nl~~~~~~~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 10 NITKTFGGVKALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eeEEEeCCeEeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333443334555554455666 999999999999999999998764
No 422
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.12 E-value=0.012 Score=66.70 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=25.2
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.+++...
T Consensus 30 i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 30 IPRGS--WTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhcccC
Confidence 34566 999999999999999999998764
No 423
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.002 Score=80.03 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=32.5
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+....+|....++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 10 ~l~~~~~~~~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 10 GIGKSFGPVHALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred eeEEEcCCeEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCcC
Confidence 33333443334444444445666 999999999999999999998763
No 424
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.0014 Score=73.19 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=27.5
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|.+|+|||||++.++....
T Consensus 18 l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 18 LNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred EeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCcC
Confidence 333433344566 999999999999999999998653
No 425
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0054 Score=68.98 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 28 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 28 AVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 3444443444666 99999999999999999999864
No 426
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.017 Score=67.60 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=24.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++....
T Consensus 23 ~Ge--~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 23 AQG--ITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 455 999999999999999999998764
No 427
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.012 Score=64.62 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=27.0
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 26 ~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 26 HNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 33333334566 999999999999999999998753
No 428
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.09 E-value=0.1 Score=58.80 Aligned_cols=160 Identities=13% Similarity=0.163 Sum_probs=81.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHH-
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERL- 254 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 254 (1462)
..+..++|+|++|+|||.+|++++...- ..| +-++.++ +.. ... ...+..+++++..-
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg--~~~---i~vsa~e------L~s-------k~v---GEsEk~IR~~F~~A~ 204 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG--IEP---IVMSAGE------LES-------ENA---GEPGKLIRQRYREAA 204 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC--CCe---EEEEHHH------hhc-------CcC---CcHHHHHHHHHHHHH
Confidence 4567899999999999999999999983 222 2222211 111 010 11222333333222
Q ss_pred ----HccCcEEEEEcCCccccccc---------ccC-CCCcccccc-----------ccCCCCCcEEEEEecchhhhhhc
Q 046345 255 ----KKEKKVLIILDNIWTKLELD---------VVG-IPYGDVEKE-----------RKDDESGCTIILTSRNRDLLEKD 309 (1462)
Q Consensus 255 ----~~~k~~LlVlDdv~~~~~~~---------~~~-~~~~~l~~~-----------~~~~~~gs~IlvTtr~~~v~~~~ 309 (1462)
.++++++|++||++...--. .+. ..+-.+.+. -.....+..||+||.........
T Consensus 205 ~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpA 284 (413)
T PLN00020 205 DIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAP 284 (413)
T ss_pred HHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHh
Confidence 13689999999987431100 000 000000000 00124566788888777654222
Q ss_pred c-CCCc-eEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch
Q 046345 310 M-KSQK-NFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV 359 (1462)
Q Consensus 310 ~-~~~~-~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 359 (1462)
. ...+ .-.+..-+.++-.++++.+......+ ..-..+|++...|-|+
T Consensus 285 LlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 285 LIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred HcCCCCCCceeCCCCHHHHHHHHHHHhccCCCC---HHHHHHHHHcCCCCCc
Confidence 1 1111 11233456677777777666432211 2445557776666654
No 429
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.08 E-value=0.023 Score=56.24 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=26.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEE
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAE 215 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~ 215 (1462)
+|+|+|++|+|||||...|+.-..+. .+.+|++
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~ 59 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA---SGEILIN 59 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC---CceEEEc
Confidence 99999999999999999999987432 2355554
No 430
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.08 E-value=0.012 Score=66.11 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=29.0
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 28 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 28 AVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred eeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 3444444445666 999999999999999999998764
No 431
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.0061 Score=75.41 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.+++...
T Consensus 14 l~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~ 49 (491)
T PRK10982 14 LDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred eeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCC
Confidence 344443344566 999999999999999999998753
No 432
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.06 E-value=0.0034 Score=67.03 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVA 199 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~ 199 (1462)
++++|.|++|+|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 589999999999999999998
No 433
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.2 Score=60.14 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=76.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK 255 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 255 (1462)
...+-|.++|++|.|||++|+++++... -.| +.+... +++.... ...+..+..+++.-+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~--~nF-----lsvkgp----EL~sk~v----------GeSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAG--MNF-----LSVKGP----ELFSKYV----------GESERAIREVFRKAR 524 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhc--CCe-----eeccCH----HHHHHhc----------CchHHHHHHHHHHHh
Confidence 3566889999999999999999999883 344 222211 1111111 123445556666665
Q ss_pred ccCcEEEEEcCCcccccccc--cCCC----CccccccccC--CCCCcEEEEEecchhhhh-hccC---CCceEEccCCCH
Q 046345 256 KEKKVLIILDNIWTKLELDV--VGIP----YGDVEKERKD--DESGCTIILTSRNRDLLE-KDMK---SQKNFLIEVLSK 323 (1462)
Q Consensus 256 ~~k~~LlVlDdv~~~~~~~~--~~~~----~~~l~~~~~~--~~~gs~IlvTtr~~~v~~-~~~~---~~~~~~l~~L~~ 323 (1462)
+..+.++.||+++....-.. .... +..++...-+ ...+.-||-.|..++... ..+. -.+.+.+..-+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 66779999999875421110 0000 0000000000 112223333343333331 1233 345788888888
Q ss_pred HHHHHHHHHHhCC
Q 046345 324 DEALQLFECIVGD 336 (1462)
Q Consensus 324 ~ea~~lf~~~~~~ 336 (1462)
+.-.++|+.++..
T Consensus 605 ~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 605 EARLEILKQCAKK 617 (693)
T ss_pred HHHHHHHHHHHhc
Confidence 8899999998853
No 434
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.015 Score=72.04 Aligned_cols=35 Identities=20% Similarity=0.482 Sum_probs=26.8
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
++.+.-.+..++ +++|+|++|+|||||.+.++...
T Consensus 269 l~~isl~i~~Ge--~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 269 REPISFSVRAGE--IVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred ccceeEEEeCCc--EEEEEcCCCCCHHHHHHHHcCCC
Confidence 334333334566 99999999999999999998765
No 435
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.05 E-value=0.013 Score=70.22 Aligned_cols=75 Identities=24% Similarity=0.291 Sum_probs=56.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHc
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKK 256 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 256 (1462)
.-++..+.|++|.||||||..++++.- ..++=|++++..+...+-..|...+....-.+ ..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHSVLD--------------AD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhccccc--------------cC
Confidence 456899999999999999999999872 24777888888888777777766554332211 13
Q ss_pred cCcEEEEEcCCccc
Q 046345 257 EKKVLIILDNIWTK 270 (1462)
Q Consensus 257 ~k~~LlVlDdv~~~ 270 (1462)
+++.-||+|+++-.
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 78899999999754
No 436
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.05 E-value=0.018 Score=59.07 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=59.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhcc-----------CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDK-----------SFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKA 247 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~-----------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 247 (1462)
+++.|+|++|.|||++.+.+.--.-... .+....|. +.- +....+.. .. ....
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~----------i~~~~~lS----~G-~~~~ 85 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS-AEL----------IFTRLQLS----GG-EKEL 85 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE-EEE----------ehheeecc----cc-HHHH
Confidence 5899999999999999999766553221 11111111 000 11111111 11 2222
Q ss_pred HHHHHHHHc---cCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhh
Q 046345 248 YRLCERLKK---EKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE 307 (1462)
Q Consensus 248 ~~l~~~l~~---~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~ 307 (1462)
..+...+.. +++-++++|++....+..........+.++. ..|+.+|+||++.+...
T Consensus 86 ~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~---~~~~~vii~TH~~~~~~ 145 (162)
T cd03227 86 SALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL---VKGAQVIVITHLPELAE 145 (162)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hcCCEEEEEcCCHHHHH
Confidence 233333322 2778999999988766543322222222221 12778999999988763
No 437
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.05 E-value=0.019 Score=63.70 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.8
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||.+.++....
T Consensus 25 i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 25 VDPGE--LRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 33566 999999999999999999998753
No 438
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0064 Score=68.54 Aligned_cols=48 Identities=27% Similarity=0.361 Sum_probs=32.7
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+....+|....++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 23 ~~nl~~~~~~~~~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 23 VEGVKVFYGGFLALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EeeEEEEeCCeEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 3333333443334444544445666 99999999999999999999654
No 439
>PRK10867 signal recognition particle protein; Provisional
Probab=96.03 E-value=0.34 Score=57.47 Aligned_cols=60 Identities=25% Similarity=0.367 Sum_probs=36.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCC
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-PDHQKIQDKLAFDLGME 236 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 236 (1462)
+...+|.++|++|+||||.|..++........ ..++.|+.... ....+-++..+...+.+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G-~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKK-KKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcC-CcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 34679999999999999999999887753311 23444544321 11222333445555543
No 440
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.03 E-value=0.0056 Score=76.35 Aligned_cols=36 Identities=19% Similarity=0.483 Sum_probs=28.4
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 15 ~l~~is~~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 15 VLKNISFTIEEGE--VLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhcc
Confidence 3444444445666 99999999999999999999974
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.02 E-value=0.022 Score=62.00 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=50.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC------------------C
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL------------------N 240 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------------~ 240 (1462)
.++.|.|.+|+||||+|.+++.....++ ..+++++... +..++.+.+ .+++..... .
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccCh
Confidence 3999999999999999877766653222 3456666333 445555555 334332110 0
Q ss_pred cChHHHHHHHHHHHHccCcEEEEEcCCccc
Q 046345 241 ENTFQKAYRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 241 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
.........+.+.....++-++|+|.+...
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~ 129 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSL 129 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHH
Confidence 001222333333332345678999998764
No 442
>PLN03073 ABC transporter F family; Provisional
Probab=96.02 E-value=0.003 Score=80.33 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=33.4
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
..+....+|....++.+.-.+..++ .++|+|++|+|||||.+.++..
T Consensus 180 i~nls~~y~~~~ll~~isl~i~~Ge--~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 180 MENFSISVGGRDLIVDASVTLAFGR--HYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EceEEEEeCCCEEEECCEEEECCCC--EEEEECCCCCCHHHHHHHHcCC
Confidence 4444444554344555544444566 9999999999999999999874
No 443
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.02 E-value=0.0073 Score=67.43 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 19 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 19 CRDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred eecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 344443344566 999999999999999999998763
No 444
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.01 E-value=0.002 Score=67.72 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=56.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC--Cc-ChHHHHHHHHHHHH-
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL--NE-NTFQKAYRLCERLK- 255 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~-~~~~~~~~l~~~l~- 255 (1462)
++.|+|++|.||||+.+.++-..... +-...+|..-..- ....++...++..... .. .-.....++...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la-~~G~~v~a~~~~~----~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMA-QIGSFVPAESAEL----PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHH-HhCCCeeehheEe----cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 47899999999999999998443211 1101111100000 0000111111111100 00 01111222322222
Q ss_pred ccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhh
Q 046345 256 KEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE 307 (1462)
Q Consensus 256 ~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~ 307 (1462)
..++-++++|++....+...-......+.+.+. ...++.+|++||+.++..
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~-~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLL-EKIGALTLFATHYHELTK 126 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCeEEEEecHHHHHH
Confidence 148899999999876554321111111122211 123678999999987663
No 445
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.0086 Score=66.71 Aligned_cols=33 Identities=15% Similarity=0.434 Sum_probs=25.5
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++..
T Consensus 20 ~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 20 KGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhh
Confidence 33333344566 9999999999999999999864
No 446
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.01 E-value=0.018 Score=64.76 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=27.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 28 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 28 LNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred EeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 344443444566 999999999999999999998753
No 447
>PLN03211 ABC transporter G-25; Provisional
Probab=96.00 E-value=0.0089 Score=75.71 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=27.9
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||.+.+++...
T Consensus 83 iL~~vs~~i~~Ge--~~aI~GpnGaGKSTLL~iLaG~~~ 119 (659)
T PLN03211 83 ILNGVTGMASPGE--ILAVLGPSGSGKSTLLNALAGRIQ 119 (659)
T ss_pred eeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3333333333455 999999999999999999998764
No 448
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.00 E-value=0.008 Score=63.81 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=59.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcC------hHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNEN------TFQKAYRLCE 252 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~ 252 (1462)
++++|.|++|.||||+.+.++....-. +.. .++.... .. -.+.+.|...++........ +..+...+..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la-~~G--~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMA-QIG--CFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHH-HcC--CCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Confidence 599999999999999999998665211 100 1111110 01 12223333333332211110 1111222222
Q ss_pred HHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhh
Q 046345 253 RLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE 307 (1462)
Q Consensus 253 ~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~ 307 (1462)
. ..++-|+++|++....+...-......+.+.+ ...|..+|++||+.+.+.
T Consensus 105 ~--~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l--~~~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 105 Y--ADGDSLVLIDELGRGTSSADGFAISLAILECL--IKKESTVFFATHFRDIAA 155 (204)
T ss_pred h--cCCCcEEEeccccCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHH
Confidence 1 25788999999965432211000001111122 223788999999998874
No 449
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.98 E-value=0.026 Score=60.87 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=36.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQD 227 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 227 (1462)
-.++.|+|++|+|||++|..++..... .-..++|++... ++..++.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHHH
Confidence 359999999999999999999888742 346789999876 66555443
No 450
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.98 E-value=0.008 Score=75.45 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ .++|+|++|+|||||++.+.+...
T Consensus 338 ~l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 338 SVGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 4444444444566 999999999999999999998664
No 451
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.98 E-value=0.0063 Score=63.79 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=30.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK 206 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~ 206 (1462)
++++...+.+++ .++|+|.+|+|||||.+.+++-..+..
T Consensus 43 L~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 43 LKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred ecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 344444455677 999999999999999999999886543
No 452
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.97 E-value=0.018 Score=65.08 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=24.9
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 25 i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 25 AEKGE--MVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 44566 999999999999999999998653
No 453
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.97 E-value=0.019 Score=63.31 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=24.8
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||.+.++....
T Consensus 23 i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 23 VPTGS--LVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 33566 999999999999999999998653
No 454
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=95.97 E-value=0.017 Score=67.67 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=24.1
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++....
T Consensus 22 ~Ge--i~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 22 GQG--VTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 455 999999999999999999998764
No 455
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0042 Score=72.07 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=28.6
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
++.+.-.+..++ +++|+|++|+|||||.+.++.....
T Consensus 22 l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p 58 (351)
T PRK11432 22 IDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKP 58 (351)
T ss_pred EeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCC
Confidence 344443344566 9999999999999999999987743
No 456
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0052 Score=72.02 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=32.6
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
..+....+|....++.+.-.+..++ +++|+|++|+|||||.+.++.-...
T Consensus 22 l~~v~~~~~~~~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p 71 (377)
T PRK11607 22 IRNLTKSFDGQHAVDDVSLTIYKGE--IFALLGASGCGKSTLLRMLAGFEQP 71 (377)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3444443443222333333333566 9999999999999999999987643
No 457
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0075 Score=69.79 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=28.3
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|.+|+|||||++.+.+-..
T Consensus 23 l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 23 VDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccCC
Confidence 344444444666 999999999999999999998753
No 458
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.02 Score=63.05 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.3
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
.++ +++|+|++|+|||||++.++....+
T Consensus 24 ~Ge--~~~i~G~nG~GKStLl~~l~G~~~p 51 (235)
T cd03299 24 RGD--YFVILGPTGSGKSVLLETIAGFIKP 51 (235)
T ss_pred CCc--EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 455 9999999999999999999887543
No 459
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=95.95 E-value=0.0083 Score=67.62 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=33.2
Q ss_pred ccCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 152 QVKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
...+....+|....++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 27 ~~~nl~~~~~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 27 EVRNLNLFYGDKQALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred EEEEEEEEECCeeEeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence 34444444443333444443344566 99999999999999999998874
No 460
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.94 E-value=0.022 Score=64.68 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 23 l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 23 IHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 333333344566 999999999999999999998764
No 461
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.94 E-value=0.044 Score=60.08 Aligned_cols=48 Identities=25% Similarity=0.262 Sum_probs=36.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEecCCCCHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDK----SFDKVVMAEVTQTPDHQKIQ 226 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~ 226 (1462)
.++.|+|++|+|||++|..++....... .-..++|++....++..++.
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 4999999999999999999988764221 11568999988777765543
No 462
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.01 Score=67.59 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 27 l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 27 LNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred eeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 333333344566 999999999999999999998764
No 463
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.93 E-value=0.0041 Score=72.74 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=27.8
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
+.+.-.+..++ +++|+|++|+|||||.+.++.....
T Consensus 31 ~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~~p 66 (375)
T PRK09452 31 SNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAGFETP 66 (375)
T ss_pred eeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 33333344566 9999999999999999999987643
No 464
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.93 E-value=0.032 Score=72.30 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
.++.+.-.+..++ .++|+|++|+|||||++.+.+...+
T Consensus 496 vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p 533 (711)
T TIGR00958 496 VLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQP 533 (711)
T ss_pred cccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCC
Confidence 4555554455666 9999999999999999999988754
No 465
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.93 E-value=0.017 Score=62.87 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 20 l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 20 LDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred ccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcC
Confidence 344433344566 999999999999999999998753
No 466
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.009 Score=67.13 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=27.8
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 35 il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 35 AIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence 3344433344566 99999999999999999999875
No 467
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=95.92 E-value=0.0066 Score=75.37 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=28.9
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 16 il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 16 ALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred eecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444444445666 999999999999999999998654
No 468
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=95.92 E-value=0.0091 Score=74.90 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=29.5
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++.+.-.+..++ +++|+|++|+|||||.+.++....
T Consensus 20 il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~ 56 (552)
T TIGR03719 20 ILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDK 56 (552)
T ss_pred eecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 4455554455667 999999999999999999998764
No 469
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.92 E-value=0.011 Score=68.59 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=32.6
Q ss_pred cCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 257 EKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 257 ~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.++.||.||++.+..|++++.. +.+++.....+ .++|++|+++..
T Consensus 238 ~kP~LLLLDEPtnhLDleA~~w----Lee~L~k~d~~-~lVi~sh~QDfl 282 (614)
T KOG0927|consen 238 QKPDLLLLDEPTNHLDLEAIVW----LEEYLAKYDRI-ILVIVSHSQDFL 282 (614)
T ss_pred cCCCEEEecCCccCCCHHHHHH----HHHHHHhccCc-eEEEEecchhhh
Confidence 5788999999999988877632 23333333333 689999998776
No 470
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.92 E-value=0.0085 Score=66.87 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=26.2
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++..
T Consensus 22 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 22 LYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred eeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhcc
Confidence 344433344566 9999999999999999999964
No 471
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.91 E-value=0.0072 Score=58.61 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 472
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.0064 Score=68.02 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=27.4
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++.+.-.+..++ +++|+|.+|+|||||++.++...
T Consensus 27 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 27 ALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 3444433344566 99999999999999999999754
No 473
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.05 Score=67.38 Aligned_cols=139 Identities=20% Similarity=0.238 Sum_probs=79.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHc
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKK 256 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 256 (1462)
..+.+-++|++|.|||.||+++++... ..|-.+. .. .+.. .. ....+..+..++..-.+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~-----~~----~l~s-------k~---vGesek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVK-----GS----ELLS-------KW---VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEee-----CH----HHhc-------cc---cchHHHHHHHHHHHHHc
Confidence 455889999999999999999999663 3443322 11 1110 00 11123445555555556
Q ss_pred cCcEEEEEcCCcccccccccCC------CCcccccccc--CCCCCcEEEEEecchhhhhhcc----CCCceEEccCCCHH
Q 046345 257 EKKVLIILDNIWTKLELDVVGI------PYGDVEKERK--DDESGCTIILTSRNRDLLEKDM----KSQKNFLIEVLSKD 324 (1462)
Q Consensus 257 ~k~~LlVlDdv~~~~~~~~~~~------~~~~l~~~~~--~~~~gs~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ 324 (1462)
..+..|.+|+++....+..-.. ....+..... ....+..||-+|.........+ .-...+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 8899999999976533322110 0011111110 1223444455555554442111 12458999999999
Q ss_pred HHHHHHHHHhCC
Q 046345 325 EALQLFECIVGD 336 (1462)
Q Consensus 325 ea~~lf~~~~~~ 336 (1462)
+..+.|+.+..+
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999999864
No 474
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.90 E-value=0.018 Score=66.45 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=28.6
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
++.+.-.+..++ +++|+|.+|+|||||++.+..-...
T Consensus 32 l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 32 VNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred EeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCC
Confidence 344443444566 9999999999999999999987643
No 475
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.90 E-value=0.021 Score=64.67 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|.+|+|||||.+.+++...
T Consensus 26 l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 26 LDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 344433344566 999999999999999999998764
No 476
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.90 E-value=0.011 Score=67.02 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=40.2
Q ss_pred ccchhHHHHHHHHHHhcc------CCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 158 AFDSRMKVFQDVVEAAKD------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~------~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++|-++.++++++++.. ...+++.++|++|+||||||+.+++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999863 2347899999999999999999999984
No 477
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.90 E-value=0.02 Score=63.16 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=24.9
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 25 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 25 IKPGE--VVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCcC
Confidence 34566 999999999999999999998763
No 478
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.88 E-value=0.01 Score=66.05 Aligned_cols=35 Identities=14% Similarity=0.431 Sum_probs=26.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 19 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 19 LKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred eecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 334443344566 99999999999999999999753
No 479
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.88 E-value=0.023 Score=62.77 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.1
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 26 i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 26 IPPGK--TVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred ecCCC--EEEEEeCCCCCHHHHHHHHhccCC
Confidence 34566 999999999999999999998763
No 480
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.87 E-value=0.099 Score=57.19 Aligned_cols=169 Identities=19% Similarity=0.209 Sum_probs=97.3
Q ss_pred cccchhHHHHHHHHHHhc----cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCC-HHHHHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPD-HQKIQDKLAF 231 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~ 231 (1462)
..++|-.++...+..++. -++..-|.++|+.|.|||+|......+. +..-+..+-|.+....- .+-.++.|.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 345677777777777766 3666689999999999999998888873 22223445555554432 2334555555
Q ss_pred HhCC----CCCCCcChHHHHHHHHHHHHc-----cCcEEEEEcCCcccccc-------cccCCCCccccccccCCCCCcE
Q 046345 232 DLGM----EFGLNENTFQKAYRLCERLKK-----EKKVLIILDNIWTKLEL-------DVVGIPYGDVEKERKDDESGCT 295 (1462)
Q Consensus 232 ~l~~----~~~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~~-------~~~~~~~~~l~~~~~~~~~gs~ 295 (1462)
++.. ......+..+....+.+.++. +.++++|+|+++--... .-+...-.. ..+-+-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~-------r~Pici 174 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA-------RAPICI 174 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc-------CCCeEE
Confidence 5432 222223344556667776653 45589999988643111 111011011 345667
Q ss_pred EEEEecchhhh--hh---ccCCCc-eEEccCCCHHHHHHHHHHHh
Q 046345 296 IILTSRNRDLL--EK---DMKSQK-NFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 296 IlvTtr~~~v~--~~---~~~~~~-~~~l~~L~~~ea~~lf~~~~ 334 (1462)
|-+|||-.-.- .. ..-..+ ++-+..++-++-..++++..
T Consensus 175 ig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 175 IGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 77899864322 11 112223 44455677777777777765
No 481
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.014 Score=66.18 Aligned_cols=47 Identities=19% Similarity=0.429 Sum_probs=32.4
Q ss_pred CCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+....++....++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 43 ~~l~~~~~~~~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 43 RDLNVFYGDEQALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred EEEEEEECCEeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 343333443334444444444666 99999999999999999999765
No 482
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.87 E-value=0.087 Score=68.90 Aligned_cols=105 Identities=20% Similarity=0.244 Sum_probs=59.3
Q ss_pred ccchhHHHHHHHHHHhcc--------C-CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAKD--------D-KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--------~-~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 228 (1462)
.++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+++.... .-...+.++.+.-... . .
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~--~~~~~i~id~se~~~~-~---~ 642 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD--SDDAMVRIDMSEFMEK-H---S 642 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc--CCCcEEEEEhHHhhhh-h---h
Confidence 467999998888888762 1 1247889999999999999999987631 1123344544432111 1 1
Q ss_pred HHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccc
Q 046345 229 LAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
+.+-+|.+........ ...+...+.....-+|+|||+...
T Consensus 643 ~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 643 VSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred HHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhC
Confidence 1222332221111111 112333333334469999999754
No 483
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.87 E-value=0.028 Score=61.83 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=54.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC------------------
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL------------------ 239 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------------ 239 (1462)
..++.|+|.+|+|||++|.++...... .=..++|++..+. ...+.+++ .+++.....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 349999999999999999999776532 2346889988654 34444443 233322110
Q ss_pred --CcChHHHHHHHHHHHHccCcEEEEEcCCcc
Q 046345 240 --NENTFQKAYRLCERLKKEKKVLIILDNIWT 269 (1462)
Q Consensus 240 --~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 269 (1462)
.....+....+.+.+.+.+.-++|+|.+..
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~ 131 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTI 131 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHH
Confidence 011234445555555444667999999874
No 484
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.87 E-value=0.0031 Score=71.35 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=40.7
Q ss_pred ccCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhc
Q 046345 152 QVKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 205 (1462)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~ 205 (1462)
..++....||....++.+.-.+..++ .+++.|++|+||||+.+.++.-..+.
T Consensus 7 ~i~~v~k~yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~ 58 (352)
T COG3842 7 EIRNVSKSFGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPS 58 (352)
T ss_pred EEEeeeeecCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34455566676666777776666777 99999999999999999999987554
No 485
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.86 E-value=0.019 Score=64.84 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|.+|+|||||++.++....
T Consensus 27 i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 27 APRNS--RIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 34566 999999999999999999998754
No 486
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=95.85 E-value=0.022 Score=67.14 Aligned_cols=35 Identities=26% Similarity=0.534 Sum_probs=27.0
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+.-.+..++ +++|+|++|+|||||.+.+.....
T Consensus 20 ~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 20 DGVDLSVREGS--LVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred EeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCC
Confidence 33333334566 999999999999999999998653
No 487
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0072 Score=68.07 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=27.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 25 l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 25 LKNVSFEINEGE--YVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 344433344566 999999999999999999998864
No 488
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.02 Score=64.63 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=27.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 23 l~~vsl~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 23 LKDVSFSVYEGE--WVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred eeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCC
Confidence 333333344566 999999999999999999998764
No 489
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.021 Score=62.94 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=25.1
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 25 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 25 IPAGE--TVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence 34566 999999999999999999998864
No 490
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.83 E-value=0.005 Score=66.24 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
++++|+|++|.||||+.+.++...
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH
Confidence 699999999999999999997543
No 491
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.82 E-value=0.18 Score=60.77 Aligned_cols=194 Identities=17% Similarity=0.182 Sum_probs=112.8
Q ss_pred cccchhHHHHHHHHHHhc----c-CCceEEEEEecCCCcHHHHHHHHHHHHhh---c---cCCCeEEEEEecCCCCHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAK----D-DKLNIIGVYGMGGVGKTTLVKQVAKQVME---D---KSFDKVVMAEVTQTPDHQKI 225 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~-~~~~vv~I~G~~GvGKTtLa~~~~~~~~~---~---~~f~~~~wv~~~~~~~~~~~ 225 (1462)
...-+|+.++.+|-.++. + +....+-|.|.+|+|||..+..|.+.... . ..|+. +.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHH
Confidence 345689999988887765 3 44458899999999999999999997641 1 23432 44555556679999
Q ss_pred HHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc-----cc-ccCCCCccccccccCCCCCcE
Q 046345 226 QDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE-----LD-VVGIPYGDVEKERKDDESGCT 295 (1462)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~-----~~-~~~~~~~~l~~~~~~~~~gs~ 295 (1462)
+..|+.++....... ......+..+.. ..+..++++|+++.... +. -+.+| ..+++|
T Consensus 475 Y~~I~~~lsg~~~~~---~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp----------t~~~sK 541 (767)
T KOG1514|consen 475 YEKIWEALSGERVTW---DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP----------TLKNSK 541 (767)
T ss_pred HHHHHHhcccCcccH---HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC----------cCCCCc
Confidence 999999987664422 222233333332 25678999999865411 11 12222 445676
Q ss_pred EEEEec-chhhh-hhc-------cCCCceEEccCCCHHHHHHHHHHHhCCC--CCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 296 IILTSR-NRDLL-EKD-------MKSQKNFLIEVLSKDEALQLFECIVGDS--AKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 296 IlvTtr-~~~v~-~~~-------~~~~~~~~l~~L~~~ea~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
++|.+= +-... ... .-....+...+.+.++-.++...+..+. ......+-++++|+..-|..-.|+.+.
T Consensus 542 Lvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 542 LVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred eEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 665442 21111 100 1112356777788777777776666432 122223344555555555544444443
No 492
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.82 E-value=0.017 Score=71.50 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=27.0
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 264 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 264 IRDVSFDLHKGE--ILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred cceeeEEEeCCc--EEEEecCCCCCHHHHHHHHcCCC
Confidence 344433334566 99999999999999999999765
No 493
>PRK10536 hypothetical protein; Provisional
Probab=95.81 E-value=0.044 Score=59.07 Aligned_cols=57 Identities=21% Similarity=0.319 Sum_probs=44.0
Q ss_pred CCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEE
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVV 212 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~ 212 (1462)
.+...+.+|......+..++.+.+ .|.+.|++|+|||+||.+++.+......|+.++
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 334556788888888888888765 999999999999999999999754334455443
No 494
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=95.79 E-value=0.023 Score=70.47 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=26.3
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 280 ~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~Gl~ 313 (510)
T PRK15439 280 RNISLEVRAGE--ILGLAGVVGAGRTELAETLYGLR 313 (510)
T ss_pred cceeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCC
Confidence 33333333555 99999999999999999999865
No 495
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.011 Score=66.01 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=27.4
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 19 l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 19 VKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 444444444666 99999999999999999999754
No 496
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.0073 Score=67.64 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=29.4
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
.++.+.-.+..++ +++|+|.+|+|||||++.++.....
T Consensus 22 il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 22 ILEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred EeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCC
Confidence 3444443444666 9999999999999999999998653
No 497
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.21 Score=62.80 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=53.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHcc
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ-TPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKE 257 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 257 (1462)
++++++|++|+||||.+..++...........+..+.... .....+-++..++.++.+.....+..+ .....+.+. +
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~~-~ 263 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAALG-D 263 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHhc-C
Confidence 5999999999999999999998774332223455555432 222445566667777765542233333 344444442 3
Q ss_pred CcEEEEEcCCc
Q 046345 258 KKVLIILDNIW 268 (1462)
Q Consensus 258 k~~LlVlDdv~ 268 (1462)
+ -++++|=+.
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 477888775
No 498
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.78 E-value=0.043 Score=60.63 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=40.5
Q ss_pred ccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH-hhccCCCe
Q 046345 158 AFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV-MEDKSFDK 210 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~-~~~~~f~~ 210 (1462)
++-+|..+..--++.|.++++..|.+.|.+|+|||-||.+..-.. .++..|..
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~K 278 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRK 278 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhce
Confidence 345677777777888889999999999999999999998776544 23344444
No 499
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.77 E-value=0.0062 Score=65.36 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=58.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH-hhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCC------cChHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV-MEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLN------ENTFQKAYRL 250 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------~~~~~~~~~l 250 (1462)
.++++|.|++|.||||+.+.++... .... ...+|..-..- ..+.+|...++...... ..+......+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~--G~~v~a~~~~~----~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQI--GSFVPASSATL----SIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhC--CCEEEcCceEE----eccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 3488999999999999999999843 2111 11222210000 00111111111111100 1112223333
Q ss_pred HHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhh
Q 046345 251 CERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLE 307 (1462)
Q Consensus 251 ~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~ 307 (1462)
.+. ..++-|+++|++....+..+-......+.+++. ...++.+|++||+.+++.
T Consensus 105 l~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~-~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 105 LSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLL-EEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHH-hccCCeEEEEcccHHHHH
Confidence 332 267999999998544221110000011222222 225788999999998863
No 500
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.76 E-value=0.04 Score=61.92 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=24.9
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.++....
T Consensus 42 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 42 IPEKT--VTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHHhhcc
Confidence 34566 999999999999999999998753
Done!