Query 046345
Match_columns 1462
No_of_seqs 625 out of 6951
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 19:36:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-41 4.4E-46 422.8 15.9 307 160-497 131-471 (549)
2 3rgz_A Protein brassinosteroid 100.0 3.2E-36 1.1E-40 392.9 30.5 485 540-1219 50-549 (768)
3 3rgz_A Protein brassinosteroid 100.0 3.3E-36 1.1E-40 392.8 29.4 489 518-1145 50-557 (768)
4 1vt4_I APAF-1 related killer D 100.0 2.4E-34 8.1E-39 354.8 23.0 283 159-490 130-436 (1221)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-32 1.2E-36 352.6 39.5 436 522-1049 8-464 (680)
6 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-33 6.6E-38 392.3 26.0 313 154-497 121-452 (1249)
7 1ziw_A TOLL-like receptor 3; i 100.0 1E-32 3.4E-37 357.6 26.6 151 544-712 8-162 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4E-31 1.4E-35 337.8 34.3 178 521-712 14-198 (606)
9 3t6q_A CD180 antigen; protein- 100.0 4.4E-31 1.5E-35 337.5 30.9 537 521-1255 15-558 (606)
10 3t6q_A CD180 antigen; protein- 100.0 2.3E-30 7.9E-35 330.8 30.1 476 558-1219 24-511 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-30 9E-35 330.3 29.7 508 518-1219 32-556 (606)
12 1z6t_A APAF-1, apoptotic prote 100.0 5.2E-30 1.8E-34 325.0 28.6 307 156-495 123-450 (591)
13 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-28 1.2E-32 320.3 34.6 170 522-708 8-187 (844)
14 2z81_A CD282 antigen, TOLL-lik 100.0 4.4E-28 1.5E-32 305.9 27.8 169 524-707 11-184 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1.2E-27 4.2E-32 303.6 30.3 173 523-712 12-194 (570)
16 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-26 6E-31 304.3 37.5 139 558-708 16-161 (844)
17 2z63_A TOLL-like receptor 4, v 100.0 4.7E-27 1.6E-31 298.2 30.6 173 518-706 28-211 (570)
18 2z81_A CD282 antigen, TOLL-lik 99.9 8.7E-27 3E-31 294.0 27.1 238 558-885 17-262 (549)
19 4g8a_A TOLL-like receptor 4; l 99.9 4.7E-25 1.6E-29 284.3 34.1 526 528-1219 41-578 (635)
20 2z7x_B TOLL-like receptor 1, v 99.9 8.3E-25 2.8E-29 273.5 29.8 459 521-1137 3-479 (520)
21 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-24 3.7E-29 272.5 29.8 462 543-1219 3-479 (520)
22 4eco_A Uncharacterized protein 99.9 2.8E-25 9.6E-30 282.5 20.8 125 540-674 81-284 (636)
23 4eco_A Uncharacterized protein 99.9 5.3E-25 1.8E-29 280.0 23.0 359 560-1050 197-598 (636)
24 4g8a_A TOLL-like receptor 4; l 99.9 2.5E-24 8.7E-29 277.5 28.8 143 558-711 43-189 (635)
25 4ecn_A Leucine-rich repeat pro 99.9 2.3E-24 7.8E-29 277.1 26.2 357 561-1050 440-838 (876)
26 4ecn_A Leucine-rich repeat pro 99.9 9.1E-25 3.1E-29 280.8 21.3 71 603-674 435-526 (876)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3E-23 1E-27 261.4 30.2 88 916-1019 351-439 (562)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-22 6.2E-27 254.2 29.2 463 538-1219 29-508 (562)
29 1o6v_A Internalin A; bacterial 99.9 1E-22 3.6E-27 249.7 24.0 323 566-1050 64-386 (466)
30 1o6v_A Internalin A; bacterial 99.9 2.5E-22 8.5E-27 246.4 25.3 273 519-884 47-319 (466)
31 1jl5_A Outer protein YOPM; leu 99.9 1.6E-22 5.4E-27 245.1 17.4 146 537-709 8-167 (454)
32 3v47_A TOLL-like receptor 5B a 99.9 2.9E-22 9.9E-27 246.0 20.0 172 522-710 14-195 (455)
33 4fmz_A Internalin; leucine ric 99.9 1E-21 3.5E-26 231.5 22.3 147 537-705 41-187 (347)
34 3o6n_A APL1; leucine-rich repe 99.9 3.3E-21 1.1E-25 230.8 24.6 152 535-704 40-195 (390)
35 1jl5_A Outer protein YOPM; leu 99.9 8.2E-22 2.8E-26 238.8 19.3 99 568-674 9-122 (454)
36 3v47_A TOLL-like receptor 5B a 99.9 6E-21 2.1E-25 234.3 24.2 365 518-984 30-407 (455)
37 3bz5_A Internalin-J, INLJ; leu 99.9 4.9E-21 1.7E-25 232.2 23.0 102 566-675 38-139 (457)
38 2id5_A Lingo-1, leucine rich r 99.9 3.1E-20 1E-24 229.2 27.1 313 522-983 15-331 (477)
39 3bz5_A Internalin-J, INLJ; leu 99.9 9.4E-21 3.2E-25 229.7 22.0 144 538-708 40-183 (457)
40 3oja_B Anopheles plasmodium-re 99.8 1.3E-20 4.6E-25 238.2 19.7 306 536-929 47-356 (597)
41 4fmz_A Internalin; leucine ric 99.8 1.1E-19 3.9E-24 213.9 24.7 300 518-928 44-343 (347)
42 2id5_A Lingo-1, leucine rich r 99.8 7.3E-20 2.5E-24 225.8 22.4 305 558-1019 23-331 (477)
43 3oja_B Anopheles plasmodium-re 99.8 6.1E-20 2.1E-24 232.1 19.3 304 568-1019 49-356 (597)
44 3o6n_A APL1; leucine-rich repe 99.8 1.5E-19 5.1E-24 216.4 20.3 299 518-928 45-349 (390)
45 4fcg_A Uncharacterized protein 99.8 1.4E-18 4.8E-23 201.4 17.0 129 569-707 80-218 (328)
46 1xku_A Decorin; proteoglycan, 99.8 5.6E-18 1.9E-22 197.5 21.0 151 541-709 32-185 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 2.6E-18 8.7E-23 200.5 18.1 123 541-675 34-159 (332)
48 3ogk_B Coronatine-insensitive 99.8 3.3E-19 1.1E-23 226.9 11.3 37 1100-1137 462-499 (592)
49 3ogk_B Coronatine-insensitive 99.8 3.8E-19 1.3E-23 226.4 8.7 455 868-1438 67-548 (592)
50 2p1m_B Transport inhibitor res 99.7 6E-19 2E-23 224.8 4.3 18 786-803 63-80 (594)
51 2z80_A TOLL-like receptor 2, v 99.7 1.9E-17 6.4E-22 195.0 16.8 170 523-707 36-210 (353)
52 2ft3_A Biglycan; proteoglycan, 99.7 3.2E-17 1.1E-21 191.1 17.6 288 520-885 35-331 (332)
53 2p1m_B Transport inhibitor res 99.7 1.2E-18 4.2E-23 221.9 5.9 170 915-1136 63-245 (594)
54 4fcg_A Uncharacterized protein 99.7 6.5E-17 2.2E-21 187.3 17.4 149 518-675 81-241 (328)
55 1ogq_A PGIP-2, polygalacturona 99.7 7.4E-17 2.5E-21 185.7 16.4 173 519-707 51-233 (313)
56 1xku_A Decorin; proteoglycan, 99.7 1.4E-16 4.8E-21 185.7 18.4 288 520-884 33-329 (330)
57 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-18 3.7E-23 214.6 -0.5 158 540-707 3-182 (461)
58 3zyj_A Leucine-rich repeat-con 99.7 2.2E-16 7.5E-21 191.9 17.6 169 521-706 46-218 (440)
59 3zyi_A Leucine-rich repeat-con 99.7 1.9E-16 6.3E-21 193.3 16.9 170 521-707 57-230 (452)
60 3g06_A SSPH2 (leucine-rich rep 99.7 9.6E-16 3.3E-20 190.9 22.8 111 541-673 41-151 (622)
61 1ogq_A PGIP-2, polygalacturona 99.7 1.3E-16 4.6E-21 183.6 12.8 152 540-708 50-210 (313)
62 3zyi_A Leucine-rich repeat-con 99.7 2.9E-16 9.8E-21 191.6 16.4 152 542-710 56-211 (452)
63 3g06_A SSPH2 (leucine-rich rep 99.7 1.2E-15 3.9E-20 190.1 21.8 256 518-885 40-295 (622)
64 3zyj_A Leucine-rich repeat-con 99.7 4.3E-16 1.5E-20 189.3 16.5 152 542-710 45-200 (440)
65 2z66_A Variable lymphocyte rec 99.7 1.5E-16 5.3E-21 183.2 10.5 174 522-710 11-190 (306)
66 2z80_A TOLL-like receptor 2, v 99.6 7.8E-16 2.7E-20 181.1 14.5 179 518-711 52-238 (353)
67 2z66_A Variable lymphocyte rec 99.6 9.9E-16 3.4E-20 176.4 12.4 146 544-707 11-162 (306)
68 1ozn_A Reticulon 4 receptor; N 99.6 2.6E-15 9E-20 170.7 14.9 174 521-710 14-192 (285)
69 1h6u_A Internalin H; cell adhe 99.6 5.8E-15 2E-19 169.3 16.9 186 519-727 42-227 (308)
70 1ozn_A Reticulon 4 receptor; N 99.6 3.5E-15 1.2E-19 169.7 14.9 192 518-724 32-232 (285)
71 3o53_A Protein LRIM1, AGAP0063 99.6 6.3E-16 2.1E-20 178.6 7.3 88 787-888 189-276 (317)
72 2o6q_A Variable lymphocyte rec 99.6 8.1E-15 2.8E-19 165.0 15.8 189 520-724 18-212 (270)
73 1p9a_G Platelet glycoprotein I 99.6 6.3E-15 2.2E-19 167.1 14.3 189 519-724 11-202 (290)
74 2o6q_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 163.2 15.5 176 518-708 37-218 (270)
75 3o53_A Protein LRIM1, AGAP0063 99.6 3.8E-16 1.3E-20 180.4 2.9 255 558-933 22-277 (317)
76 3m19_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 160.5 14.6 173 520-708 16-192 (251)
77 1h6t_A Internalin B; cell adhe 99.6 3.2E-14 1.1E-18 161.5 16.9 170 519-711 47-216 (291)
78 2xwt_C Thyrotropin receptor; s 99.5 2.3E-14 8E-19 158.0 13.7 137 530-675 23-168 (239)
79 2z62_A TOLL-like receptor 4, v 99.5 1.5E-14 5.1E-19 163.6 11.4 173 526-711 15-193 (276)
80 3oja_A Leucine-rich immune mol 99.5 1.9E-14 6.4E-19 176.1 13.1 124 539-675 33-156 (487)
81 1wwl_A Monocyte differentiatio 99.5 3.1E-15 1.1E-19 172.3 5.6 151 540-707 43-213 (312)
82 3rfs_A Internalin B, repeat mo 99.5 5E-14 1.7E-18 158.6 15.0 172 519-707 42-217 (272)
83 2xwt_C Thyrotropin receptor; s 99.5 2.6E-14 8.8E-19 157.7 11.5 191 518-724 31-233 (239)
84 2z62_A TOLL-like receptor 4, v 99.5 4.4E-14 1.5E-18 159.8 13.2 191 518-724 28-231 (276)
85 1h6u_A Internalin H; cell adhe 99.5 1.6E-13 5.3E-18 157.4 17.3 172 518-712 63-234 (308)
86 1z7x_W Ribonuclease inhibitor; 99.5 2.6E-15 9E-20 184.3 1.6 335 519-885 29-409 (461)
87 1p9a_G Platelet glycoprotein I 99.5 8.3E-14 2.8E-18 157.9 12.7 172 537-726 7-181 (290)
88 1h6t_A Internalin B; cell adhe 99.5 1E-13 3.6E-18 157.3 13.5 179 526-727 32-210 (291)
89 3rfs_A Internalin B, repeat mo 99.5 9.8E-14 3.3E-18 156.2 12.4 180 527-724 28-212 (272)
90 3e6j_A Variable lymphocyte rec 99.5 3E-13 1E-17 147.5 14.6 147 521-675 22-171 (229)
91 1m9s_A Internalin B; cell inva 99.5 1.9E-13 6.5E-18 170.1 14.5 170 519-711 44-213 (605)
92 2qen_A Walker-type ATPase; unk 99.5 5.8E-12 2E-16 148.1 26.5 295 155-490 10-348 (350)
93 1wwl_A Monocyte differentiatio 99.5 8.4E-14 2.9E-18 160.3 9.5 137 568-710 93-243 (312)
94 2v9t_B SLIT homolog 2 protein 99.4 2.6E-13 8.8E-18 146.9 12.6 146 522-675 15-164 (220)
95 3m19_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 149.2 14.3 152 518-676 35-192 (251)
96 4ezg_A Putative uncharacterize 99.4 3E-13 1E-17 143.9 12.1 106 566-674 62-170 (197)
97 2v70_A SLIT-2, SLIT homolog 2 99.4 4.3E-13 1.5E-17 145.1 12.7 147 521-675 14-165 (220)
98 1xeu_A Internalin C; cellular 99.4 4.1E-13 1.4E-17 149.7 12.7 166 522-711 23-188 (263)
99 4ezg_A Putative uncharacterize 99.4 6E-13 2E-17 141.5 13.4 145 519-675 45-193 (197)
100 4ay9_X Follicle-stimulating ho 99.4 6.7E-13 2.3E-17 155.4 15.0 111 558-672 21-137 (350)
101 2fna_A Conserved hypothetical 99.4 9.9E-12 3.4E-16 146.6 23.7 295 156-490 12-356 (357)
102 3oja_A Leucine-rich immune mol 99.4 4.7E-13 1.6E-17 163.7 11.3 206 519-748 35-247 (487)
103 1w5s_A Origin recognition comp 99.4 9.4E-12 3.2E-16 149.9 22.3 311 157-486 22-387 (412)
104 2ast_B S-phase kinase-associat 99.4 6.4E-13 2.2E-17 155.3 11.4 135 563-705 61-205 (336)
105 2o6s_A Variable lymphocyte rec 99.4 2.1E-12 7.2E-17 138.8 14.0 146 522-675 11-160 (208)
106 1m9s_A Internalin B; cell inva 99.4 7.7E-13 2.6E-17 164.7 11.0 178 525-725 28-205 (605)
107 2v9t_B SLIT homolog 2 protein 99.4 1.1E-12 3.9E-17 141.7 10.3 147 543-707 14-164 (220)
108 2ast_B S-phase kinase-associat 99.4 5.8E-13 2E-17 155.6 8.5 100 571-673 48-152 (336)
109 4ay9_X Follicle-stimulating ho 99.3 6.6E-12 2.2E-16 147.0 16.2 178 1100-1314 78-255 (350)
110 2xot_A Amphoterin-induced prot 99.3 2E-12 6.8E-17 152.0 10.6 170 521-706 21-200 (361)
111 1xeu_A Internalin C; cellular 99.3 5.2E-12 1.8E-16 140.8 13.2 145 518-676 41-185 (263)
112 2ell_A Acidic leucine-rich nuc 99.3 3.2E-12 1.1E-16 132.1 10.7 136 570-711 24-163 (168)
113 2v70_A SLIT-2, SLIT homolog 2 99.3 2.9E-12 9.8E-17 138.6 10.4 147 543-707 14-165 (220)
114 3e6j_A Variable lymphocyte rec 99.3 4.5E-12 1.5E-16 138.1 11.1 147 543-708 22-172 (229)
115 4glp_A Monocyte differentiatio 99.3 3.8E-12 1.3E-16 146.3 10.1 192 518-724 91-301 (310)
116 2xot_A Amphoterin-induced prot 99.3 4.2E-12 1.4E-16 149.3 10.5 151 518-675 39-201 (361)
117 2ell_A Acidic leucine-rich nuc 99.3 6.4E-12 2.2E-16 129.8 10.4 128 539-675 23-159 (168)
118 2ca6_A RAN GTPase-activating p 99.3 1.6E-12 5.6E-17 154.8 6.4 182 519-707 33-256 (386)
119 2o6s_A Variable lymphocyte rec 99.3 6.8E-12 2.3E-16 134.8 10.5 144 518-675 28-177 (208)
120 4glp_A Monocyte differentiatio 99.3 3.1E-12 1.1E-16 147.1 7.9 193 520-724 66-279 (310)
121 3goz_A Leucine-rich repeat-con 99.3 3.7E-12 1.3E-16 149.9 8.4 109 566-675 18-150 (362)
122 2je0_A Acidic leucine-rich nuc 99.3 5.1E-12 1.8E-16 127.5 8.2 103 566-670 38-147 (149)
123 3cvr_A Invasion plasmid antige 99.2 2.1E-11 7.1E-16 149.8 13.8 176 518-723 59-236 (571)
124 2wfh_A SLIT homolog 2 protein 99.2 1.4E-11 4.6E-16 130.0 10.4 114 558-675 22-138 (193)
125 1a9n_A U2A', U2A'; complex (nu 99.2 4.7E-12 1.6E-16 131.8 6.6 128 537-673 16-150 (176)
126 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.6E-16 158.8 10.9 154 519-676 174-329 (727)
127 2je0_A Acidic leucine-rich nuc 99.2 9.5E-12 3.2E-16 125.5 8.3 130 568-703 15-148 (149)
128 2ca6_A RAN GTPase-activating p 99.2 3.8E-12 1.3E-16 151.6 6.3 137 566-707 28-199 (386)
129 1w8a_A SLIT protein; signaling 99.2 1.6E-11 5.5E-16 129.5 9.2 104 571-675 30-138 (192)
130 3cvr_A Invasion plasmid antige 99.2 6.5E-11 2.2E-15 145.4 13.4 158 518-709 80-244 (571)
131 1a9n_A U2A', U2A'; complex (nu 99.2 3.3E-11 1.1E-15 125.3 9.3 136 566-708 15-153 (176)
132 1w8a_A SLIT protein; signaling 99.2 5.3E-11 1.8E-15 125.5 10.1 125 573-708 11-139 (192)
133 3goz_A Leucine-rich repeat-con 99.2 1.4E-11 4.9E-16 144.9 6.1 127 542-675 24-179 (362)
134 2qby_B CDC6 homolog 3, cell di 99.2 2.4E-09 8.1E-14 127.4 24.7 286 157-473 20-338 (384)
135 2wfh_A SLIT homolog 2 protein 99.1 1.6E-10 5.5E-15 121.7 12.1 121 521-649 13-137 (193)
136 2v1u_A Cell division control p 99.1 3.1E-09 1E-13 126.7 24.4 304 157-485 19-366 (387)
137 4b8c_D Glucose-repressible alc 99.1 3.6E-11 1.2E-15 154.0 6.6 131 537-675 221-353 (727)
138 2qby_A CDC6 homolog 1, cell di 99.1 1.8E-09 6.3E-14 128.6 20.1 297 157-473 20-347 (386)
139 2o6r_A Variable lymphocyte rec 99.1 2.7E-10 9.4E-15 118.5 11.2 105 570-675 28-136 (177)
140 1dce_A Protein (RAB geranylger 99.1 1.9E-10 6.4E-15 142.4 11.2 119 542-669 443-566 (567)
141 2o6r_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 117.6 11.7 122 521-649 10-135 (177)
142 1dce_A Protein (RAB geranylger 99.1 2.9E-10 9.8E-15 140.7 12.2 123 571-701 442-566 (567)
143 1njg_A DNA polymerase III subu 99.1 1.4E-09 4.6E-14 120.7 15.7 198 156-368 22-231 (250)
144 1ds9_A Outer arm dynein; leuci 99.0 1.9E-11 6.5E-16 129.9 -0.4 140 558-701 37-180 (198)
145 1fnn_A CDC6P, cell division co 99.0 2.8E-08 9.6E-13 118.4 26.7 292 157-473 17-350 (389)
146 2r9u_A Variable lymphocyte rec 99.0 6.8E-10 2.3E-14 114.6 10.2 100 573-675 15-117 (174)
147 3qfl_A MLA10; coiled-coil, (CC 99.0 8.4E-10 2.9E-14 103.0 9.5 78 13-98 3-81 (115)
148 2chg_A Replication factor C sm 99.0 3.9E-09 1.3E-13 114.9 16.3 186 156-365 16-204 (226)
149 3g39_A Variable lymphocyte rec 99.0 8E-10 2.7E-14 113.7 10.0 101 572-675 11-114 (170)
150 1ds9_A Outer arm dynein; leuci 99.0 2.2E-11 7.4E-16 129.5 -2.2 141 520-669 25-180 (198)
151 2r9u_A Variable lymphocyte rec 98.8 5.4E-09 1.8E-13 107.8 9.2 103 543-655 15-121 (174)
152 3sb4_A Hypothetical leucine ri 98.8 1.5E-08 5E-13 117.3 13.5 64 916-988 248-312 (329)
153 1sxj_B Activator 1 37 kDa subu 98.8 2.7E-08 9.1E-13 115.1 14.1 189 155-366 19-211 (323)
154 3g39_A Variable lymphocyte rec 98.8 1.1E-08 3.8E-13 105.1 9.2 97 543-648 12-112 (170)
155 3sb4_A Hypothetical leucine ri 98.6 4.7E-08 1.6E-12 113.0 9.8 89 614-713 225-315 (329)
156 1iqp_A RFCS; clamp loader, ext 98.6 9.8E-08 3.4E-12 110.5 11.0 186 156-367 24-214 (327)
157 2ifg_A High affinity nerve gro 98.6 9.4E-08 3.2E-12 111.6 9.4 98 575-675 13-115 (347)
158 3te6_A Regulatory protein SIR3 98.5 1.1E-06 3.6E-11 98.2 15.6 173 159-335 22-212 (318)
159 3un9_A NLR family member X1; l 98.5 1.7E-08 5.9E-13 117.8 0.9 151 519-675 73-251 (372)
160 2chq_A Replication factor C sm 98.5 7.2E-07 2.4E-11 102.8 14.1 183 156-365 16-204 (319)
161 2ifg_A High affinity nerve gro 98.4 2E-07 6.8E-12 108.8 8.2 90 558-649 21-114 (347)
162 1jr3_A DNA polymerase III subu 98.4 1.3E-06 4.4E-11 103.1 14.4 195 156-365 15-221 (373)
163 1hqc_A RUVB; extended AAA-ATPa 98.4 4.6E-06 1.6E-10 96.1 17.2 182 156-368 11-214 (324)
164 3un9_A NLR family member X1; l 98.3 2.3E-07 7.8E-12 108.3 2.7 160 539-709 71-253 (372)
165 4fs7_A Uncharacterized protein 98.3 9.4E-06 3.2E-10 96.2 16.5 67 931-1016 59-125 (394)
166 1jbk_A CLPB protein; beta barr 98.3 2.5E-06 8.4E-11 89.9 10.3 160 156-330 21-194 (195)
167 4fdw_A Leucine rich hypothetic 98.2 1.3E-05 4.4E-10 94.5 16.5 250 558-883 124-379 (401)
168 1sxj_D Activator 1 41 kDa subu 98.2 3.2E-06 1.1E-10 98.9 11.1 195 156-364 36-234 (353)
169 1sxj_E Activator 1 40 kDa subu 98.2 4.7E-06 1.6E-10 97.4 11.4 197 156-365 13-237 (354)
170 4fs7_A Uncharacterized protein 98.2 2.4E-05 8.3E-10 92.6 17.0 64 558-623 59-125 (394)
171 1sxj_C Activator 1 40 kDa subu 98.1 1.7E-05 5.8E-10 91.7 14.7 177 154-361 22-208 (340)
172 3h4m_A Proteasome-activating n 98.1 1.7E-05 5.9E-10 89.3 14.3 185 156-363 16-229 (285)
173 1d2n_A N-ethylmaleimide-sensit 98.1 5.1E-05 1.8E-09 84.5 16.9 204 158-387 34-265 (272)
174 3pvs_A Replication-associated 98.1 3.9E-05 1.3E-09 91.0 16.4 177 154-364 23-214 (447)
175 1sxj_A Activator 1 95 kDa subu 98.1 1.7E-05 5.8E-10 96.9 13.5 197 155-366 37-254 (516)
176 1a5t_A Delta prime, HOLB; zinc 98.0 5.3E-05 1.8E-09 87.0 15.9 169 162-363 7-203 (334)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.0 0.00014 4.9E-09 80.5 18.7 187 156-363 5-220 (262)
178 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00011 3.9E-09 83.5 17.7 189 156-365 11-223 (322)
179 3d8b_A Fidgetin-like protein 1 98.0 0.00012 4E-09 84.9 18.0 186 156-366 83-296 (357)
180 3bos_A Putative DNA replicatio 98.0 6E-06 2E-10 90.5 6.2 175 156-364 27-216 (242)
181 3pfi_A Holliday junction ATP-d 97.9 0.00015 5.2E-09 83.7 17.5 181 155-365 27-227 (338)
182 4fdw_A Leucine rich hypothetic 97.9 4.7E-05 1.6E-09 89.6 13.1 168 520-709 182-359 (401)
183 3eie_A Vacuolar protein sortin 97.9 7.7E-05 2.6E-09 85.2 14.3 189 155-365 16-228 (322)
184 2z4s_A Chromosomal replication 97.9 3.6E-05 1.2E-09 91.7 11.7 176 165-363 116-304 (440)
185 3b9p_A CG5977-PA, isoform A; A 97.9 0.00031 1.1E-08 79.3 19.1 187 156-364 20-232 (297)
186 3e4g_A ATP synthase subunit S, 97.9 6.7E-06 2.3E-10 82.5 4.4 41 1009-1055 115-155 (176)
187 3vfd_A Spastin; ATPase, microt 97.9 0.00031 1.1E-08 82.6 19.1 189 155-365 113-326 (389)
188 2ra8_A Uncharacterized protein 97.9 1.6E-05 5.5E-10 91.6 7.5 137 564-707 166-319 (362)
189 3u61_B DNA polymerase accessor 97.8 7.3E-05 2.5E-09 85.8 12.5 177 155-362 24-213 (324)
190 3e4g_A ATP synthase subunit S, 97.8 1.2E-05 4E-10 80.8 4.4 39 1209-1258 115-153 (176)
191 3uk6_A RUVB-like 2; hexameric 97.8 9.7E-05 3.3E-09 86.6 12.9 48 156-203 43-95 (368)
192 2qp9_X Vacuolar protein sortin 97.8 0.00012 4.2E-09 84.5 13.3 188 156-365 50-261 (355)
193 2zan_A Vacuolar protein sortin 97.8 0.0004 1.4E-08 82.8 18.0 186 155-365 132-345 (444)
194 3cf0_A Transitional endoplasmi 97.8 0.00062 2.1E-08 76.7 18.3 182 156-360 14-223 (301)
195 3syl_A Protein CBBX; photosynt 97.7 7.7E-05 2.6E-09 85.0 10.9 158 158-335 32-218 (309)
196 1io0_A Tropomodulin; LRR prote 97.7 1.4E-05 4.9E-10 82.9 4.2 111 564-675 30-163 (185)
197 4b4t_J 26S protease regulatory 97.7 0.00067 2.3E-08 77.5 18.1 181 155-358 146-354 (405)
198 2p65_A Hypothetical protein PF 97.7 6E-05 2.1E-09 78.5 8.6 48 156-203 21-68 (187)
199 3pxg_A Negative regulator of g 97.7 0.00019 6.7E-09 86.2 14.0 150 156-335 179-339 (468)
200 2gno_A DNA polymerase III, gam 97.7 0.00012 4.1E-09 82.0 11.2 147 161-334 1-152 (305)
201 1lv7_A FTSH; alpha/beta domain 97.7 0.0016 5.6E-08 71.5 19.8 185 156-363 11-223 (257)
202 3rw6_A Nuclear RNA export fact 97.6 5.3E-05 1.8E-09 82.4 6.5 79 566-644 166-257 (267)
203 3ec2_A DNA replication protein 97.6 3.6E-05 1.2E-09 79.6 4.9 121 161-303 18-143 (180)
204 4gt6_A Cell surface protein; l 97.6 0.0015 5.2E-08 77.0 19.4 110 559-672 52-169 (394)
205 1qvr_A CLPB protein; coiled co 97.6 0.00026 9E-09 92.2 13.7 182 154-355 167-369 (854)
206 4b4t_I 26S protease regulatory 97.6 0.0016 5.6E-08 74.5 17.8 180 156-358 181-388 (437)
207 1l8q_A Chromosomal replication 97.6 0.00029 1E-08 80.7 12.0 169 164-360 21-203 (324)
208 1in4_A RUVB, holliday junction 97.6 0.0008 2.8E-08 77.0 15.6 182 153-364 21-222 (334)
209 4b4t_L 26S protease subunit RP 97.5 0.0014 4.8E-08 76.3 17.4 180 156-358 180-387 (437)
210 4b4t_M 26S protease regulatory 97.5 0.00083 2.9E-08 78.1 14.9 181 155-358 179-387 (434)
211 4b4t_H 26S protease regulatory 97.5 0.0011 3.8E-08 76.7 15.6 180 156-358 208-415 (467)
212 4gt6_A Cell surface protein; l 97.4 0.0062 2.1E-07 71.8 20.9 40 944-988 135-174 (394)
213 1io0_A Tropomodulin; LRR prote 97.4 6.4E-05 2.2E-09 77.9 3.1 109 538-648 34-161 (185)
214 2w58_A DNAI, primosome compone 97.4 0.00034 1.2E-08 73.8 8.7 89 162-269 34-126 (202)
215 4b4t_K 26S protease regulatory 97.4 0.0031 1.1E-07 73.3 17.2 180 156-358 171-379 (428)
216 3rw6_A Nuclear RNA export fact 97.3 4E-05 1.4E-09 83.3 1.1 57 591-648 168-230 (267)
217 2ra8_A Uncharacterized protein 97.3 0.0002 6.7E-09 82.6 6.8 127 538-675 170-319 (362)
218 3pxi_A Negative regulator of g 97.3 0.001 3.4E-08 85.7 13.7 151 155-335 178-339 (758)
219 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0029 9.8E-08 81.6 17.2 157 155-334 184-362 (758)
220 2ce7_A Cell division protein F 97.2 0.0084 2.9E-07 71.0 18.4 179 157-358 16-221 (476)
221 3n70_A Transport activator; si 97.1 0.00027 9.1E-09 69.8 3.6 45 158-202 2-48 (145)
222 4fcw_A Chaperone protein CLPB; 97.0 0.0014 4.9E-08 74.5 10.0 105 158-270 18-131 (311)
223 3hu3_A Transitional endoplasmi 97.0 0.0037 1.3E-07 74.8 13.5 184 156-363 203-413 (489)
224 1vpl_A ABC transporter, ATP-bi 97.0 0.001 3.5E-08 72.2 7.6 27 175-203 40-66 (256)
225 2r62_A Cell division protease 96.9 0.0003 1E-08 78.1 3.0 47 157-203 11-69 (268)
226 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0016 5.6E-08 70.4 8.3 121 174-303 21-168 (235)
227 4h09_A Hypothetical leucine ri 96.9 0.063 2.2E-06 62.6 22.5 66 944-1026 284-349 (379)
228 2pze_A Cystic fibrosis transme 96.8 0.002 7E-08 68.8 8.3 27 175-203 33-59 (229)
229 1ofh_A ATP-dependent HSL prote 96.8 0.0037 1.3E-07 70.9 11.0 45 158-202 16-74 (310)
230 2pcj_A ABC transporter, lipopr 96.8 0.0013 4.5E-08 70.0 6.7 27 175-203 29-55 (224)
231 3gfo_A Cobalt import ATP-bindi 96.8 0.00071 2.4E-08 74.2 4.4 27 175-203 33-59 (275)
232 2olj_A Amino acid ABC transpor 96.8 0.0013 4.4E-08 71.7 6.5 27 175-203 49-75 (263)
233 1sgw_A Putative ABC transporte 96.8 0.00051 1.7E-08 72.3 3.0 127 175-306 34-196 (214)
234 2x8a_A Nuclear valosin-contain 96.8 0.022 7.7E-07 62.6 16.2 158 157-335 10-192 (274)
235 2yz2_A Putative ABC transporte 96.7 0.0017 6E-08 71.1 7.1 27 175-203 32-58 (266)
236 2cbz_A Multidrug resistance-as 96.7 0.0022 7.4E-08 69.0 7.7 27 175-203 30-56 (237)
237 2nq2_C Hypothetical ABC transp 96.7 0.0012 4.2E-08 71.6 5.7 127 175-306 30-192 (253)
238 4g1u_C Hemin import ATP-bindin 96.7 0.0011 3.9E-08 72.4 5.2 128 174-306 35-211 (266)
239 1ji0_A ABC transporter; ATP bi 96.7 0.0014 4.9E-08 70.6 5.9 27 175-203 31-57 (240)
240 1mv5_A LMRA, multidrug resista 96.7 0.00093 3.2E-08 72.3 4.4 25 179-203 29-53 (243)
241 2cvh_A DNA repair and recombin 96.7 0.0049 1.7E-07 65.8 10.1 88 175-271 19-118 (220)
242 2zu0_C Probable ATP-dependent 96.7 0.0048 1.6E-07 67.6 9.9 25 175-201 45-69 (267)
243 4a74_A DNA repair and recombin 96.6 0.0024 8.1E-08 68.9 7.2 91 179-270 26-137 (231)
244 2kjq_A DNAA-related protein; s 96.6 0.00074 2.5E-08 66.7 2.7 40 177-218 35-74 (149)
245 3tif_A Uncharacterized ABC tra 96.6 0.0017 5.8E-08 69.7 5.7 27 175-203 30-56 (235)
246 2qi9_C Vitamin B12 import ATP- 96.6 0.0015 5E-08 70.7 5.1 27 175-203 25-51 (249)
247 3cf2_A TER ATPase, transitiona 96.6 0.0039 1.3E-07 78.3 9.2 159 177-359 237-408 (806)
248 1ixz_A ATP-dependent metallopr 96.5 0.02 7E-07 62.5 13.9 156 180-358 51-221 (254)
249 1n0w_A DNA repair protein RAD5 96.5 0.0093 3.2E-07 64.8 10.9 93 175-270 23-131 (243)
250 3tui_C Methionine import ATP-b 96.5 0.0015 5.1E-08 74.0 4.5 28 174-203 52-79 (366)
251 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0042 1.4E-07 67.4 8.0 25 175-201 28-52 (250)
252 1ye8_A Protein THEP1, hypothet 96.5 0.0051 1.7E-07 62.7 7.9 24 180-203 2-25 (178)
253 1g6h_A High-affinity branched- 96.5 0.0038 1.3E-07 68.0 7.4 28 174-203 31-58 (257)
254 1b0u_A Histidine permease; ABC 96.5 0.0017 5.9E-08 70.9 4.6 27 175-203 31-57 (262)
255 2ff7_A Alpha-hemolysin translo 96.5 0.0065 2.2E-07 65.7 9.1 27 175-203 34-60 (247)
256 2c9o_A RUVB-like 1; hexameric 96.5 0.012 4.1E-07 70.4 12.4 47 157-203 37-88 (456)
257 3m6a_A ATP-dependent protease 96.4 0.013 4.4E-07 71.6 12.6 45 159-203 83-133 (543)
258 2bbs_A Cystic fibrosis transme 96.4 0.0038 1.3E-07 69.0 7.1 27 175-203 63-89 (290)
259 2onk_A Molybdate/tungstate ABC 96.4 0.0017 5.7E-08 69.8 3.9 25 179-203 25-49 (240)
260 3b5x_A Lipid A export ATP-bind 96.4 0.0086 2.9E-07 74.1 10.8 52 151-204 342-395 (582)
261 2pjz_A Hypothetical protein ST 96.4 0.0052 1.8E-07 66.9 7.6 118 180-306 32-188 (263)
262 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0034 1.2E-07 71.1 6.2 27 175-203 29-55 (359)
263 1iy2_A ATP-dependent metallopr 96.3 0.04 1.4E-06 61.1 15.0 156 180-358 75-245 (278)
264 2it1_A 362AA long hypothetical 96.3 0.0042 1.4E-07 70.7 6.9 27 175-203 28-54 (362)
265 2ehv_A Hypothetical protein PH 96.3 0.0029 9.9E-08 69.3 5.4 41 174-217 28-68 (251)
266 2ghi_A Transport protein; mult 96.3 0.0088 3E-07 65.2 9.0 26 175-202 45-70 (260)
267 3rlf_A Maltose/maltodextrin im 96.2 0.0025 8.4E-08 72.8 4.2 27 175-203 28-54 (381)
268 1z47_A CYSA, putative ABC-tran 96.2 0.0026 8.9E-08 72.1 4.3 28 174-203 39-66 (355)
269 2ixe_A Antigen peptide transpo 96.2 0.0038 1.3E-07 68.5 5.4 27 175-203 44-70 (271)
270 3d31_A Sulfate/molybdate ABC t 96.2 0.0054 1.8E-07 69.5 6.7 125 175-306 25-191 (348)
271 2ihy_A ABC transporter, ATP-bi 96.2 0.0027 9.3E-08 69.9 4.1 49 153-203 24-72 (279)
272 4gp7_A Metallophosphoesterase; 96.1 0.0026 8.9E-08 64.7 3.4 19 179-197 10-28 (171)
273 2yyz_A Sugar ABC transporter, 96.1 0.0044 1.5E-07 70.5 5.6 27 175-203 28-54 (359)
274 3pxi_A Negative regulator of g 96.1 0.0052 1.8E-07 79.1 6.8 156 157-334 491-675 (758)
275 3t15_A Ribulose bisphosphate c 96.0 0.018 6.2E-07 64.2 9.8 25 178-202 36-60 (293)
276 1g29_1 MALK, maltose transport 96.0 0.0036 1.2E-07 71.8 3.9 27 175-203 28-54 (372)
277 1oxx_K GLCV, glucose, ABC tran 96.0 0.003 1E-07 71.9 3.3 27 175-203 30-56 (353)
278 3io5_A Recombination and repai 95.9 0.033 1.1E-06 60.9 11.0 86 180-270 30-123 (333)
279 3j16_B RLI1P; ribosome recycli 95.9 0.0099 3.4E-07 72.9 7.5 27 175-203 102-128 (608)
280 1v43_A Sugar-binding transport 95.8 0.0034 1.2E-07 71.8 3.1 27 175-203 36-62 (372)
281 1pzn_A RAD51, DNA repair and r 95.8 0.013 4.3E-07 67.1 7.8 93 179-272 132-245 (349)
282 2iw3_A Elongation factor 3A; a 95.8 0.0032 1.1E-07 80.4 2.7 119 175-306 460-608 (986)
283 2dhr_A FTSH; AAA+ protein, hex 95.7 0.077 2.6E-06 63.2 14.0 180 156-358 30-236 (499)
284 1cr0_A DNA primase/helicase; R 95.7 0.015 5.2E-07 65.2 7.7 49 166-217 25-73 (296)
285 1r6b_X CLPA protein; AAA+, N-t 95.7 0.021 7.2E-07 73.5 10.0 102 158-270 459-569 (758)
286 1ypw_A Transitional endoplasmi 95.7 0.019 6.5E-07 73.6 9.3 179 156-358 203-407 (806)
287 3j16_B RLI1P; ribosome recycli 95.6 0.0089 3E-07 73.3 5.9 126 179-306 379-531 (608)
288 3nh6_A ATP-binding cassette SU 95.6 0.007 2.4E-07 67.3 4.5 27 175-203 79-105 (306)
289 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0052 1.8E-07 74.7 3.6 128 173-306 44-221 (538)
290 3bk7_A ABC transporter ATP-bin 95.6 0.0081 2.8E-07 73.8 5.4 125 180-306 384-535 (607)
291 3gd7_A Fusion complex of cysti 95.6 0.0067 2.3E-07 69.8 4.1 28 173-202 44-71 (390)
292 1qvr_A CLPB protein; coiled co 95.6 0.056 1.9E-06 70.2 13.4 46 158-203 559-613 (854)
293 3kl4_A SRP54, signal recogniti 95.5 0.21 7.1E-06 58.1 16.4 90 177-268 96-189 (433)
294 3lda_A DNA repair protein RAD5 95.5 0.037 1.3E-06 64.1 10.0 90 180-270 180-285 (400)
295 3hr8_A Protein RECA; alpha and 95.5 0.046 1.6E-06 61.9 10.6 85 179-270 62-151 (356)
296 1yqt_A RNAse L inhibitor; ATP- 95.5 0.0062 2.1E-07 74.1 3.6 125 180-306 314-465 (538)
297 3dm5_A SRP54, signal recogniti 95.5 0.41 1.4E-05 55.6 18.6 28 177-204 99-126 (443)
298 2z43_A DNA repair and recombin 95.4 0.06 2.1E-06 60.9 11.4 90 179-269 108-214 (324)
299 2zr9_A Protein RECA, recombina 95.4 0.04 1.4E-06 62.7 9.8 85 179-270 62-151 (349)
300 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.012 4E-07 64.8 5.0 68 179-269 124-193 (331)
301 1htw_A HI0065; nucleotide-bind 95.4 0.0096 3.3E-07 59.1 4.0 40 161-202 18-57 (158)
302 1v5w_A DMC1, meiotic recombina 95.4 0.071 2.4E-06 60.8 11.8 90 179-269 123-230 (343)
303 3ozx_A RNAse L inhibitor; ATP 95.4 0.0069 2.3E-07 73.4 3.5 125 180-306 296-449 (538)
304 3b60_A Lipid A export ATP-bind 95.3 0.0061 2.1E-07 75.5 3.0 27 175-203 368-394 (582)
305 3e70_C DPA, signal recognition 95.3 0.7 2.4E-05 51.8 19.5 58 176-235 127-185 (328)
306 2xxa_A Signal recognition part 95.3 0.91 3.1E-05 53.1 21.0 92 176-268 98-193 (433)
307 3ozx_A RNAse L inhibitor; ATP 95.3 0.015 5.1E-07 70.4 6.0 24 179-202 26-49 (538)
308 2qgz_A Helicase loader, putati 95.2 0.029 1E-06 62.9 7.9 55 161-216 132-189 (308)
309 3bk7_A ABC transporter ATP-bin 95.2 0.0096 3.3E-07 73.2 4.0 128 173-306 114-291 (607)
310 3jvv_A Twitching mobility prot 95.2 0.026 9.1E-07 64.2 7.4 109 179-306 124-234 (356)
311 3aez_A Pantothenate kinase; tr 95.1 0.049 1.7E-06 61.0 9.2 43 176-218 88-130 (312)
312 4h09_A Hypothetical leucine ri 95.1 0.045 1.5E-06 63.9 9.3 124 538-672 215-342 (379)
313 1xp8_A RECA protein, recombina 95.0 0.075 2.6E-06 60.7 10.4 84 179-270 75-164 (366)
314 3qf4_A ABC transporter, ATP-bi 95.0 0.015 5.3E-07 71.7 5.0 27 175-203 368-394 (587)
315 2px0_A Flagellar biosynthesis 94.9 0.07 2.4E-06 59.2 9.7 86 178-267 105-191 (296)
316 2i1q_A DNA repair and recombin 94.9 0.064 2.2E-06 60.8 9.7 90 179-269 99-215 (322)
317 3c8u_A Fructokinase; YP_612366 94.9 0.025 8.5E-07 59.5 5.7 53 163-217 5-59 (208)
318 1rz3_A Hypothetical protein rb 94.9 0.029 1E-06 58.6 6.2 43 161-203 2-47 (201)
319 2dr3_A UPF0273 protein PH0284; 94.8 0.069 2.4E-06 57.8 9.3 40 175-218 22-61 (247)
320 2iw3_A Elongation factor 3A; a 94.8 0.017 5.8E-07 73.8 4.8 26 175-202 698-723 (986)
321 2pt7_A CAG-ALFA; ATPase, prote 94.7 0.028 9.5E-07 63.6 5.9 118 165-305 160-277 (330)
322 3ux8_A Excinuclease ABC, A sub 94.7 0.023 8E-07 71.6 5.8 54 259-318 223-276 (670)
323 1u94_A RECA protein, recombina 94.7 0.098 3.4E-06 59.5 10.4 85 179-270 64-153 (356)
324 3qf4_B Uncharacterized ABC tra 94.5 0.0083 2.8E-07 74.4 1.0 27 175-203 380-406 (598)
325 1ewq_A DNA mismatch repair pro 94.5 0.025 8.5E-07 71.2 5.2 24 179-202 577-600 (765)
326 3bh0_A DNAB-like replicative h 94.4 0.15 5E-06 57.4 10.9 62 165-232 57-118 (315)
327 1jr3_D DNA polymerase III, del 94.4 0.19 6.5E-06 57.5 12.1 161 173-363 13-183 (343)
328 4a82_A Cystic fibrosis transme 94.3 0.018 6E-07 71.2 3.3 27 175-203 366-392 (578)
329 1odf_A YGR205W, hypothetical 3 94.3 0.2 6.9E-06 55.2 11.4 56 176-231 29-85 (290)
330 3ice_A Transcription terminati 94.3 0.076 2.6E-06 59.6 7.8 87 179-270 175-273 (422)
331 2jeo_A Uridine-cytidine kinase 94.2 0.023 8E-07 61.5 3.7 40 161-202 10-49 (245)
332 3tqc_A Pantothenate kinase; bi 94.0 0.15 5.1E-06 56.8 9.8 61 158-218 68-132 (321)
333 3b85_A Phosphate starvation-in 94.0 0.028 9.7E-07 58.7 3.6 38 160-204 10-47 (208)
334 4aby_A DNA repair protein RECN 94.0 0.019 6.6E-07 68.0 2.6 23 180-202 62-84 (415)
335 1tf7_A KAIC; homohexamer, hexa 94.0 0.017 5.9E-07 70.4 2.1 132 163-305 25-187 (525)
336 1tf7_A KAIC; homohexamer, hexa 93.9 0.054 1.8E-06 66.0 6.3 116 180-303 283-417 (525)
337 2o8b_B DNA mismatch repair pro 93.9 0.01 3.5E-07 77.3 -0.1 24 178-202 789-812 (1022)
338 3co5_A Putative two-component 93.9 0.021 7.3E-07 55.8 2.2 45 158-202 5-51 (143)
339 2r6a_A DNAB helicase, replicat 93.8 1.7 5.9E-05 51.5 19.3 61 165-230 192-252 (454)
340 4a1f_A DNAB helicase, replicat 93.8 0.27 9.1E-06 55.2 11.3 62 165-232 35-96 (338)
341 3cf2_A TER ATPase, transitiona 93.8 0.043 1.5E-06 68.9 5.3 178 157-357 477-682 (806)
342 2ck3_D ATP synthase subunit be 93.7 0.4 1.4E-05 55.7 12.7 91 179-270 154-265 (482)
343 2v9p_A Replication protein E1; 93.7 0.04 1.4E-06 60.9 4.3 47 153-202 104-150 (305)
344 1z6g_A Guanylate kinase; struc 93.7 0.031 1E-06 59.2 3.3 35 166-202 13-47 (218)
345 3thx_A DNA mismatch repair pro 93.7 0.076 2.6E-06 68.2 7.4 23 178-200 662-684 (934)
346 1ls1_A Signal recognition part 93.7 0.24 8.3E-06 54.8 10.6 88 178-267 98-189 (295)
347 1g5t_A COB(I)alamin adenosyltr 93.6 0.049 1.7E-06 55.3 4.4 123 179-305 29-165 (196)
348 2ffh_A Protein (FFH); SRP54, s 93.6 3.2 0.00011 48.1 20.2 88 177-267 97-189 (425)
349 2r44_A Uncharacterized protein 93.5 0.043 1.5E-06 62.7 4.4 44 157-202 27-70 (331)
350 1vma_A Cell division protein F 93.5 0.14 4.7E-06 56.9 8.2 88 177-268 103-196 (306)
351 3vaa_A Shikimate kinase, SK; s 93.5 0.047 1.6E-06 56.9 4.2 24 179-202 26-49 (199)
352 2yl4_A ATP-binding cassette SU 93.5 0.054 1.8E-06 67.1 5.4 27 175-203 369-395 (595)
353 1sky_E F1-ATPase, F1-ATP synth 93.4 0.15 5E-06 59.5 8.5 90 180-270 153-257 (473)
354 1znw_A Guanylate kinase, GMP k 93.3 0.046 1.6E-06 57.4 3.9 29 173-203 17-45 (207)
355 1zp6_A Hypothetical protein AT 93.3 0.043 1.5E-06 56.7 3.6 23 179-201 10-32 (191)
356 3rfe_A Platelet glycoprotein I 93.3 0.11 3.8E-06 49.4 6.1 52 574-627 12-67 (130)
357 1kgd_A CASK, peripheral plasma 93.2 0.046 1.6E-06 55.9 3.6 24 179-202 6-29 (180)
358 4eun_A Thermoresistant glucoki 93.2 0.052 1.8E-06 56.6 4.0 26 177-202 28-53 (200)
359 3uie_A Adenylyl-sulfate kinase 93.2 0.065 2.2E-06 55.8 4.7 28 176-203 23-50 (200)
360 3thx_B DNA mismatch repair pro 93.2 0.02 7E-07 73.2 0.9 140 160-306 645-799 (918)
361 3kb2_A SPBC2 prophage-derived 93.1 0.05 1.7E-06 55.1 3.7 24 179-202 2-25 (173)
362 3nbx_X ATPase RAVA; AAA+ ATPas 93.1 0.049 1.7E-06 65.0 4.1 44 158-203 23-66 (500)
363 3nwj_A ATSK2; P loop, shikimat 93.1 0.052 1.8E-06 58.4 3.8 40 161-202 30-72 (250)
364 3a00_A Guanylate kinase, GMP k 92.9 0.045 1.5E-06 56.3 2.9 25 179-203 2-26 (186)
365 4akg_A Glutathione S-transfera 92.9 0.67 2.3E-05 66.2 15.4 78 180-268 1269-1346(2695)
366 3tr0_A Guanylate kinase, GMP k 92.8 0.053 1.8E-06 56.8 3.5 24 179-202 8-31 (205)
367 1qhx_A CPT, protein (chloramph 92.8 0.057 2E-06 55.0 3.6 24 179-202 4-27 (178)
368 2ga8_A Hypothetical 39.9 kDa p 92.8 0.097 3.3E-06 58.6 5.6 41 163-203 5-49 (359)
369 1kag_A SKI, shikimate kinase I 92.8 0.05 1.7E-06 55.2 3.0 24 179-202 5-28 (173)
370 2hf9_A Probable hydrogenase ni 92.8 0.11 3.9E-06 55.3 6.0 40 164-203 24-63 (226)
371 2bjv_A PSP operon transcriptio 92.7 0.066 2.3E-06 58.8 4.2 61 157-219 6-68 (265)
372 1j8m_F SRP54, signal recogniti 92.7 0.5 1.7E-05 52.3 11.3 90 178-269 98-191 (297)
373 1g8p_A Magnesium-chelatase 38 92.7 0.053 1.8E-06 62.5 3.5 49 155-203 22-70 (350)
374 1lvg_A Guanylate kinase, GMP k 92.7 0.055 1.9E-06 56.3 3.2 25 179-203 5-29 (198)
375 1wb9_A DNA mismatch repair pro 92.6 0.12 4.3E-06 65.3 7.0 26 177-202 606-631 (800)
376 3asz_A Uridine kinase; cytidin 92.6 0.077 2.6E-06 55.9 4.3 27 177-203 5-31 (211)
377 2bdt_A BH3686; alpha-beta prot 92.5 0.067 2.3E-06 55.2 3.7 22 179-200 3-24 (189)
378 3k1j_A LON protease, ATP-depen 92.5 0.064 2.2E-06 66.6 4.1 49 153-203 37-85 (604)
379 2bbw_A Adenylate kinase 4, AK4 92.5 0.072 2.5E-06 57.7 4.0 25 178-202 27-51 (246)
380 3tau_A Guanylate kinase, GMP k 92.4 0.073 2.5E-06 55.8 3.8 26 178-203 8-33 (208)
381 1knq_A Gluconate kinase; ALFA/ 92.4 0.08 2.7E-06 53.7 4.0 25 178-202 8-32 (175)
382 2wsm_A Hydrogenase expression/ 92.3 0.11 3.7E-06 55.2 5.1 42 162-203 14-55 (221)
383 3trf_A Shikimate kinase, SK; a 92.3 0.078 2.7E-06 54.4 3.8 25 178-202 5-29 (185)
384 3t61_A Gluconokinase; PSI-biol 92.3 0.066 2.2E-06 56.0 3.2 25 178-202 18-42 (202)
385 1rj9_A FTSY, signal recognitio 92.2 0.092 3.1E-06 58.4 4.5 29 177-205 101-129 (304)
386 2obl_A ESCN; ATPase, hydrolase 92.2 0.09 3.1E-06 59.7 4.4 47 154-203 49-96 (347)
387 3rfe_A Platelet glycoprotein I 92.1 0.13 4.4E-06 49.0 4.8 54 619-675 12-67 (130)
388 1xjc_A MOBB protein homolog; s 92.1 0.14 4.6E-06 51.1 5.0 27 177-203 3-29 (169)
389 2q6t_A DNAB replication FORK h 92.0 0.45 1.5E-05 56.4 10.5 61 166-231 190-250 (444)
390 1ly1_A Polynucleotide kinase; 92.0 0.085 2.9E-06 53.8 3.7 22 179-200 3-24 (181)
391 3lw7_A Adenylate kinase relate 92.0 0.075 2.6E-06 54.0 3.3 20 179-198 2-21 (179)
392 2j37_W Signal recognition part 92.0 1.1 3.8E-05 53.3 13.6 91 177-269 100-194 (504)
393 3ux8_A Excinuclease ABC, A sub 92.0 0.081 2.8E-06 66.6 4.1 54 259-318 565-618 (670)
394 2f1r_A Molybdopterin-guanine d 91.9 0.082 2.8E-06 53.1 3.3 27 179-205 3-29 (171)
395 2ze6_A Isopentenyl transferase 91.9 0.093 3.2E-06 56.9 4.0 24 179-202 2-25 (253)
396 3ney_A 55 kDa erythrocyte memb 91.9 0.09 3.1E-06 53.9 3.6 25 178-202 19-43 (197)
397 1nks_A Adenylate kinase; therm 91.9 0.1 3.4E-06 54.0 4.2 25 179-203 2-26 (194)
398 2rhm_A Putative kinase; P-loop 91.9 0.11 3.8E-06 53.7 4.4 25 178-202 5-29 (193)
399 1fx0_B ATP synthase beta chain 91.8 0.4 1.4E-05 55.9 9.2 91 179-270 166-278 (498)
400 1s96_A Guanylate kinase, GMP k 91.8 0.092 3.2E-06 55.3 3.6 25 179-203 17-41 (219)
401 2yvu_A Probable adenylyl-sulfa 91.7 0.11 3.8E-06 53.3 4.2 28 177-204 12-39 (186)
402 1via_A Shikimate kinase; struc 91.7 0.085 2.9E-06 53.6 3.2 23 180-202 6-28 (175)
403 2j41_A Guanylate kinase; GMP, 91.7 0.1 3.4E-06 54.7 3.8 24 179-202 7-30 (207)
404 3cmu_A Protein RECA, recombina 91.6 0.39 1.3E-05 66.0 10.2 85 178-269 1427-1516(2050)
405 3b9q_A Chloroplast SRP recepto 91.6 0.12 4.2E-06 57.4 4.6 27 178-204 100-126 (302)
406 4f4c_A Multidrug resistance pr 91.6 0.073 2.5E-06 72.2 3.3 27 175-203 1104-1130(1321)
407 2i3b_A HCR-ntpase, human cance 91.5 0.092 3.1E-06 53.8 3.2 24 180-203 3-26 (189)
408 3hws_A ATP-dependent CLP prote 91.5 0.14 4.8E-06 59.1 5.2 44 159-202 17-75 (363)
409 1cke_A CK, MSSA, protein (cyti 91.5 0.1 3.6E-06 55.6 3.8 24 179-202 6-29 (227)
410 1gvn_B Zeta; postsegregational 91.5 0.16 5.6E-06 56.1 5.4 26 177-202 32-57 (287)
411 3umf_A Adenylate kinase; rossm 91.4 0.13 4.4E-06 53.8 4.3 27 176-202 27-53 (217)
412 1pgv_A TMD-1, tropomodulin TMD 91.4 0.15 5.2E-06 52.0 4.6 82 566-647 37-135 (197)
413 1zuh_A Shikimate kinase; alpha 91.4 0.11 3.8E-06 52.2 3.7 26 177-202 6-31 (168)
414 1kht_A Adenylate kinase; phosp 91.4 0.11 3.8E-06 53.6 3.8 25 179-203 4-28 (192)
415 1ojl_A Transcriptional regulat 91.4 0.13 4.4E-06 57.5 4.5 45 158-202 3-49 (304)
416 2qor_A Guanylate kinase; phosp 91.4 0.096 3.3E-06 54.8 3.3 25 178-202 12-36 (204)
417 2if2_A Dephospho-COA kinase; a 91.4 0.11 3.6E-06 54.4 3.6 22 179-200 2-23 (204)
418 2yhs_A FTSY, cell division pro 91.3 0.64 2.2E-05 54.5 10.3 28 177-204 292-319 (503)
419 1ex7_A Guanylate kinase; subst 91.3 0.096 3.3E-06 53.3 3.0 24 179-202 2-25 (186)
420 3iij_A Coilin-interacting nucl 91.3 0.1 3.4E-06 53.3 3.2 24 179-202 12-35 (180)
421 2c95_A Adenylate kinase 1; tra 91.2 0.14 4.6E-06 53.2 4.2 25 178-202 9-33 (196)
422 2vf7_A UVRA2, excinuclease ABC 91.2 0.12 4.2E-06 65.3 4.4 55 258-318 751-805 (842)
423 2jaq_A Deoxyguanosine kinase; 91.1 0.12 4.2E-06 53.9 3.8 24 180-203 2-25 (205)
424 1y63_A LMAJ004144AAA protein; 91.0 0.14 4.7E-06 52.5 3.9 24 178-201 10-33 (184)
425 1um8_A ATP-dependent CLP prote 90.9 0.19 6.6E-06 58.3 5.6 24 179-202 73-96 (376)
426 1uf9_A TT1252 protein; P-loop, 90.9 0.15 5E-06 53.2 4.1 26 176-201 6-31 (203)
427 2qt1_A Nicotinamide riboside k 90.8 0.13 4.4E-06 53.9 3.6 25 178-202 21-45 (207)
428 3cm0_A Adenylate kinase; ATP-b 90.8 0.15 5E-06 52.4 4.0 24 179-202 5-28 (186)
429 1jjv_A Dephospho-COA kinase; P 90.7 0.12 3.9E-06 54.2 3.2 22 179-200 3-24 (206)
430 1tev_A UMP-CMP kinase; ploop, 90.7 0.15 5.2E-06 52.7 4.0 24 179-202 4-27 (196)
431 2iyv_A Shikimate kinase, SK; t 90.7 0.11 3.8E-06 53.2 3.0 24 179-202 3-26 (184)
432 3tlx_A Adenylate kinase 2; str 90.7 0.28 9.6E-06 52.7 6.2 27 176-202 27-53 (243)
433 2og2_A Putative signal recogni 90.7 0.17 5.8E-06 57.4 4.6 27 178-204 157-183 (359)
434 2bwj_A Adenylate kinase 5; pho 90.7 0.15 5.1E-06 53.0 3.9 24 179-202 13-36 (199)
435 1ukz_A Uridylate kinase; trans 90.6 0.16 5.6E-06 52.9 4.2 27 176-202 13-39 (203)
436 2eyu_A Twitching motility prot 90.6 0.15 5.1E-06 55.4 4.0 36 165-204 16-51 (261)
437 4e22_A Cytidylate kinase; P-lo 90.6 0.13 4.5E-06 55.7 3.5 24 179-202 28-51 (252)
438 1sq5_A Pantothenate kinase; P- 90.5 0.3 1E-05 54.7 6.5 28 176-203 78-105 (308)
439 2dpy_A FLII, flagellum-specifi 90.4 0.19 6.5E-06 59.0 4.9 47 154-203 135-182 (438)
440 2xau_A PRE-mRNA-splicing facto 90.4 0.62 2.1E-05 59.2 10.0 66 167-234 100-165 (773)
441 2b8t_A Thymidine kinase; deoxy 90.4 0.12 4.2E-06 54.2 2.9 112 178-304 12-127 (223)
442 3a4m_A L-seryl-tRNA(SEC) kinas 90.3 0.16 5.6E-06 55.3 4.0 26 178-203 4-29 (260)
443 1e6c_A Shikimate kinase; phosp 90.3 0.14 4.6E-06 51.9 3.1 24 179-202 3-26 (173)
444 2qm8_A GTPase/ATPase; G protei 90.3 0.16 5.6E-06 57.5 4.1 42 161-204 40-81 (337)
445 1qf9_A UMP/CMP kinase, protein 90.3 0.18 6.2E-06 52.0 4.2 25 178-202 6-30 (194)
446 1tue_A Replication protein E1; 90.3 0.27 9.1E-06 50.1 5.1 39 165-203 44-83 (212)
447 1aky_A Adenylate kinase; ATP:A 90.3 0.17 5.8E-06 53.6 4.0 25 178-202 4-28 (220)
448 4f4c_A Multidrug resistance pr 90.2 0.3 1E-05 66.2 7.3 27 175-203 443-469 (1321)
449 2plr_A DTMP kinase, probable t 90.2 0.17 5.9E-06 53.1 4.0 25 179-203 5-29 (213)
450 1uj2_A Uridine-cytidine kinase 90.1 0.17 5.9E-06 54.8 3.9 27 176-202 20-46 (252)
451 2pt5_A Shikimate kinase, SK; a 90.0 0.18 6.1E-06 50.6 3.8 23 180-202 2-24 (168)
452 1pgv_A TMD-1, tropomodulin TMD 90.0 0.21 7.1E-06 51.0 4.1 81 591-672 39-135 (197)
453 3bgw_A DNAB-like replicative h 90.0 0.94 3.2E-05 53.3 10.4 60 165-230 186-245 (444)
454 2cdn_A Adenylate kinase; phosp 90.0 0.18 6.1E-06 52.5 3.8 25 178-202 20-44 (201)
455 2p5t_B PEZT; postsegregational 89.9 0.21 7.3E-06 54.1 4.5 26 177-202 31-56 (253)
456 1np6_A Molybdopterin-guanine d 89.9 0.3 1E-05 49.0 5.3 26 178-203 6-31 (174)
457 3g5u_A MCG1178, multidrug resi 89.9 0.28 9.5E-06 66.4 6.4 28 174-203 1057-1084(1284)
458 3l0o_A Transcription terminati 89.9 0.25 8.6E-06 55.3 4.9 50 169-219 165-216 (427)
459 3lnc_A Guanylate kinase, GMP k 89.8 0.11 3.7E-06 55.6 2.1 24 179-202 28-52 (231)
460 2qag_B Septin-6, protein NEDD5 89.7 0.17 5.7E-06 58.6 3.5 36 166-201 30-65 (427)
461 1g41_A Heat shock protein HSLU 89.7 0.21 7.2E-06 58.2 4.4 45 158-202 16-74 (444)
462 2r6f_A Excinuclease ABC subuni 89.7 0.4 1.4E-05 60.9 7.2 55 258-318 866-920 (972)
463 3fwy_A Light-independent proto 89.6 0.4 1.4E-05 53.5 6.5 41 176-218 46-86 (314)
464 2vli_A Antibiotic resistance p 89.6 0.13 4.6E-06 52.5 2.5 24 179-202 6-29 (183)
465 2grj_A Dephospho-COA kinase; T 89.6 0.2 6.8E-06 51.4 3.7 26 177-202 11-36 (192)
466 1zak_A Adenylate kinase; ATP:A 89.6 0.19 6.5E-06 53.3 3.7 25 178-202 5-29 (222)
467 1gtv_A TMK, thymidylate kinase 89.5 0.13 4.4E-06 54.2 2.3 24 180-203 2-25 (214)
468 3fb4_A Adenylate kinase; psych 89.5 0.2 6.9E-06 52.8 3.8 23 180-202 2-24 (216)
469 3sop_A Neuronal-specific septi 89.5 0.2 6.8E-06 54.7 3.8 25 180-204 4-28 (270)
470 1nn5_A Similar to deoxythymidy 89.5 0.23 7.8E-06 52.3 4.2 25 179-203 10-34 (215)
471 2wwf_A Thymidilate kinase, put 89.5 0.22 7.6E-06 52.3 4.1 31 179-210 11-41 (212)
472 2pbr_A DTMP kinase, thymidylat 89.5 0.21 7.1E-06 51.6 3.8 24 180-203 2-25 (195)
473 3g5u_A MCG1178, multidrug resi 89.3 0.39 1.3E-05 64.9 7.3 27 175-203 415-441 (1284)
474 1oix_A RAS-related protein RAB 89.3 0.21 7E-06 51.5 3.6 25 178-202 29-53 (191)
475 1svm_A Large T antigen; AAA+ f 89.3 0.26 8.7E-06 56.4 4.6 26 177-202 168-193 (377)
476 3r20_A Cytidylate kinase; stru 89.3 0.22 7.6E-06 52.6 3.8 24 179-202 10-33 (233)
477 3cmw_A Protein RECA, recombina 89.3 0.73 2.5E-05 62.6 9.6 95 164-267 718-819 (1706)
478 2pez_A Bifunctional 3'-phospho 89.2 0.24 8.1E-06 50.4 4.0 27 178-204 5-31 (179)
479 2gza_A Type IV secretion syste 89.2 0.18 6.1E-06 57.9 3.3 35 167-203 166-200 (361)
480 1zd8_A GTP:AMP phosphotransfer 89.2 0.22 7.4E-06 53.0 3.8 24 179-202 8-31 (227)
481 3pih_A Uvrabc system protein A 89.1 0.63 2.1E-05 59.5 8.4 56 258-319 826-881 (916)
482 1m7g_A Adenylylsulfate kinase; 89.0 0.26 9E-06 51.7 4.3 27 177-203 24-50 (211)
483 2z0h_A DTMP kinase, thymidylat 89.0 0.24 8E-06 51.3 3.8 24 180-203 2-25 (197)
484 3p32_A Probable GTPase RV1496/ 88.8 0.59 2E-05 53.4 7.3 38 166-203 65-104 (355)
485 3dl0_A Adenylate kinase; phosp 88.8 0.21 7.3E-06 52.6 3.3 23 180-202 2-24 (216)
486 3sr0_A Adenylate kinase; phosp 88.7 0.26 8.8E-06 51.2 3.8 23 180-202 2-24 (206)
487 2zts_A Putative uncharacterize 88.7 0.59 2E-05 50.4 7.0 47 180-229 32-78 (251)
488 1q57_A DNA primase/helicase; d 88.6 1.4 4.9E-05 53.1 11.0 52 175-231 241-292 (503)
489 3cmu_A Protein RECA, recombina 88.6 1.1 3.6E-05 61.9 10.5 85 179-270 384-473 (2050)
490 1tq4_A IIGP1, interferon-induc 88.6 0.28 9.6E-06 56.8 4.3 26 177-202 68-93 (413)
491 1zu4_A FTSY; GTPase, signal re 88.5 0.31 1.1E-05 54.6 4.5 39 177-217 104-142 (320)
492 3end_A Light-independent proto 88.4 0.56 1.9E-05 52.5 6.7 44 175-220 38-81 (307)
493 3d3q_A TRNA delta(2)-isopenten 88.3 0.26 8.9E-06 55.1 3.7 24 179-202 8-31 (340)
494 2f9l_A RAB11B, member RAS onco 88.2 0.26 8.7E-06 51.2 3.4 24 179-202 6-29 (199)
495 3be4_A Adenylate kinase; malar 88.1 0.27 9.3E-06 51.8 3.6 24 179-202 6-29 (217)
496 3geh_A MNME, tRNA modification 88.1 1.9 6.4E-05 50.9 11.1 88 69-202 161-248 (462)
497 3ake_A Cytidylate kinase; CMP 87.9 0.3 1E-05 51.0 3.8 23 180-202 4-26 (208)
498 1e4v_A Adenylate kinase; trans 87.9 0.31 1.1E-05 51.2 3.9 23 180-202 2-24 (214)
499 2f6r_A COA synthase, bifunctio 87.9 0.3 1E-05 53.8 3.9 24 177-200 74-97 (281)
500 1vht_A Dephospho-COA kinase; s 87.8 0.33 1.1E-05 51.3 4.0 22 179-200 5-26 (218)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-41 Score=422.81 Aligned_cols=307 Identities=14% Similarity=0.159 Sum_probs=239.1
Q ss_pred chhHHHHHHHHHHhccC---CceEEEEEecCCCcHHHHHHHHHH--HHhhccCCCeEEEEEecCCC--CHHHHHHHHHHH
Q 046345 160 DSRMKVFQDVVEAAKDD---KLNIIGVYGMGGVGKTTLVKQVAK--QVMEDKSFDKVVMAEVTQTP--DHQKIQDKLAFD 232 (1462)
Q Consensus 160 ~gr~~~~~~l~~~l~~~---~~~vv~I~G~~GvGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 232 (1462)
+||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +.+.+.+|+.++||++++.. +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999743 678999999999999999999998 45667899999999999875 789999999999
Q ss_pred hCCCCC---C----CcChHHHHHHHHHHHHccC-cEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 233 LGMEFG---L----NENTFQKAYRLCERLKKEK-KVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 233 l~~~~~---~----~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
++.... . ..........+.+.+ .++ ||||||||||+..++ .+ + ..+||+||||||++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~~kr~LlVLDdv~~~~~~-~~----~--------~~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNAL-IDRPNTLFVFDDVVQEETI-RW----A--------QELRLRCLVTTRDVE 276 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHH-TTSTTEEEEEEEECCHHHH-HH----H--------HHTTCEEEEEESBGG
T ss_pred HhcCcccccccccccccHHHHHHHHHHHH-cCCCcEEEEEECCCCchhh-cc----c--------ccCCCEEEEEcCCHH
Confidence 986521 0 112234456666777 465 999999999997655 11 1 226999999999999
Q ss_pred hhhhccC-CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046345 305 LLEKDMK-SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALKSKSLDFWKDALYRL 383 (1462)
Q Consensus 305 v~~~~~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l 383 (1462)
++. .++ ....|+|++|+.+|||+||.+.++.....++.++++++|+++|+|+||||+++|+.++.++ |+.+ +.+
T Consensus 277 v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l 351 (549)
T 2a5y_B 277 ISN-AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQL 351 (549)
T ss_dssp GGG-GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHH
T ss_pred HHH-HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHh
Confidence 984 333 4468999999999999999999875544467788999999999999999999999998774 3332 232
Q ss_pred hcCccccccchhhHHHHHHHHhhhccChHHHHHHHH-----------HhcccCCCcccChhHHHHHHhcc--cccccc--
Q 046345 384 RSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFL-----------LCGLYSEGHAIQVPSLLRYGMGL--CLFENV-- 448 (1462)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~-----------~~a~fp~~~~i~~~~Li~~W~a~--g~~~~~-- 448 (1462)
.... +.. ....+..++.+||+.||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...
T Consensus 352 ~~~l-~~~--~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~ 423 (549)
T 2a5y_B 352 NNKL-ESR--GLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEE 423 (549)
T ss_dssp HHHH-HHH--CSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------
T ss_pred HHHh-hcc--cHHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCC
Confidence 2211 111 124578889999999996 7999999 999999999999 8899999 999743
Q ss_pred -ccHHHHHHHHHHHHHHHHHccccccC--CCCCcEEEcchHHHHHHHHhccc
Q 046345 449 -YKLEEARSRVHTLIDILKASCLLSDG--DAEDEVKMHDIIHVVAVSIATEK 497 (1462)
Q Consensus 449 -~~~~~~~~~~~~~~~~L~~~~l~~~~--~~~~~~~mH~lv~~~a~~~~~~~ 497 (1462)
.+.+++++ ++++|++++|++.. +...+|+|||+||+||++++.++
T Consensus 424 ~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 424 EQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred CCCHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 23444432 78999999999864 24568999999999999998774
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-36 Score=392.85 Aligned_cols=485 Identities=15% Similarity=0.094 Sum_probs=267.0
Q ss_pred CcceEEEEeecCCCCCccccc---cChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--cc--ccc
Q 046345 540 PRLDLFLLFTKGDGSFPISMQ---MSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IA--IVG 612 (1462)
Q Consensus 540 ~~Lr~L~l~~~~~~~~~~~~~---l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~--~i~ 612 (1462)
.+++.|++.++.. ... ++.. |..+++|++++++.+.+..+|+.|+++++|++|+|++|.+.. |. .++
T Consensus 50 ~~v~~L~L~~~~l-----~g~~~~l~~~-l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKPL-----NVGFSAVSSS-LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSCC-----CEEHHHHHHH-TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred CcEEEEECCCCCc-----CCccCccChh-HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence 4677777766542 222 4443 567777777777777776677777777777777777777664 44 677
Q ss_pred cccCCcEEEecCCCCC-ccchhh-ccccccCEEccCCcccccccCccc---cccccccceeeccCcccccccccCCCccc
Q 046345 613 QLKKLEILSFRDSDIK-ELPLEI-GLLTRLSLLDLSDCWSLEVIAPNV---ISKLSRLEELYMGGSFSQWDKVEGGSNAR 687 (1462)
Q Consensus 613 ~L~~L~~L~L~~~~i~-~lp~~i-~~L~~L~~L~L~~~~~l~~~p~~~---l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 687 (1462)
++++|++|++++|.+. .+|..+ .++++|++|++++| .+...++.. ++++++|++|++++|.+...
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------- 193 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGD--------- 193 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESC---------
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCccccc---------
Confidence 7777777777777665 344443 56777777777776 455544433 56667777777766654210
Q ss_pred hHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccce
Q 046345 688 LDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDL 767 (1462)
Q Consensus 688 ~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 767 (1462)
.....+++|++|+++.|...
T Consensus 194 -~~~~~l~~L~~L~Ls~n~l~----------------------------------------------------------- 213 (768)
T 3rgz_A 194 -VDVSRCVNLEFLDVSSNNFS----------------------------------------------------------- 213 (768)
T ss_dssp -CBCTTCTTCCEEECCSSCCC-----------------------------------------------------------
T ss_pred -CCcccCCcCCEEECcCCcCC-----------------------------------------------------------
Confidence 11134555555555433221
Q ss_pred EeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcC
Q 046345 768 YLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSF 847 (1462)
Q Consensus 768 ~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~ 847 (1462)
. ..+.++.+++|++|+++++.-...++. ....+++|+.|+++++. +... .+. ..+
T Consensus 214 --------~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------~l~~l~~L~~L~Ls~n~-l~~~----~~~-~~l 268 (768)
T 3rgz_A 214 --------T----GIPFLGDCSALQHLDISGNKLSGDFSR-------AISTCTELKLLNISSNQ-FVGP----IPP-LPL 268 (768)
T ss_dssp --------S----CCCBCTTCCSCCEEECCSSCCCSCHHH-------HTTTCSSCCEEECCSSC-CEES----CCC-CCC
T ss_pred --------C----CCcccccCCCCCEEECcCCcCCCcccH-------HHhcCCCCCEEECCCCc-ccCc----cCc-ccc
Confidence 1 111145778888998887653222211 23456777888877753 2211 111 256
Q ss_pred CCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeeccc
Q 046345 848 INLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKR 927 (1462)
Q Consensus 848 ~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 927 (1462)
++|++|++++|.--..+|.. ....+++|++|++++|.-...+ +.....+++|++|++++
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~-~~~~~~~L~~L~Ls~n~l~~~~--------------------p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDF-LSGACDTLTGLDLSGNHFYGAV--------------------PPFFGSCSLLESLALSS 327 (768)
T ss_dssp TTCCEEECCSSEEEESCCCC-SCTTCTTCSEEECCSSEEEECC--------------------CGGGGGCTTCCEEECCS
T ss_pred CCCCEEECcCCccCCccCHH-HHhhcCcCCEEECcCCcCCCcc--------------------chHHhcCCCccEEECCC
Confidence 77777777776432233331 1122367777777765421111 11123566677777776
Q ss_pred ccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcc-cCcEEEEecccccceecccCCCCCCccccccccc
Q 046345 928 LANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLV-QIQHLEIRCCESMERIVDNTGLGRDEGKLIELKV 1006 (1462)
Q Consensus 928 ~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~ 1006 (1462)
|.-...++... +..+++|+.|++++|.....+ +..+.+++ +|+.|++++|.....++. .+..
T Consensus 328 n~l~~~ip~~~---l~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~~L~~L~Ls~N~l~~~~~~------------~~~~ 390 (768)
T 3rgz_A 328 NNFSGELPMDT---LLKMRGLKVLDLSFNEFSGEL--PESLTNLSASLLTLDLSSNNFSGPILP------------NLCQ 390 (768)
T ss_dssp SEEEEECCHHH---HTTCTTCCEEECCSSEEEECC--CTTHHHHTTTCSEEECCSSEEEEECCT------------TTTC
T ss_pred CcccCcCCHHH---HhcCCCCCEEeCcCCccCccc--cHHHHhhhcCCcEEEccCCCcCCCcCh------------hhhh
Confidence 63222333221 235666777777666422222 22344554 677777766543333332 1222
Q ss_pred --ccccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCcceeeccccCCcccccccccccccccchhhccc
Q 046345 1007 --FPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISSEDNAHTEMQTQPFFDEKLSIYYA 1084 (1462)
Q Consensus 1007 --l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 1084 (1462)
+++|++|++.+|.-...++.. +..+++|+.|++++|.--..+|..
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~-------l~~l~~L~~L~Ls~N~l~~~~p~~-------------------------- 437 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPT-------LSNCSELVSLHLSFNYLSGTIPSS-------------------------- 437 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGG-------GGGCTTCCEEECCSSEEESCCCGG--------------------------
T ss_pred cccCCccEEECCCCccccccCHH-------HhcCCCCCEEECcCCcccCcccHH--------------------------
Confidence 556667776665432233321 445666666666665321111111
Q ss_pred cCcccccccccccccccCCcEEEEecCCCcccccCcCcCCCCCccEEEEcccccceeeeccccccccCceeeeccccccc
Q 046345 1085 INLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIAFNELKFLE 1164 (1462)
Q Consensus 1085 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~ 1164 (1462)
+ ..+++|+.|++++|. +....|..+..+++|+.|++++|.-...++.... .+++|+.|+
T Consensus 438 ----------l--~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--------~l~~L~~L~ 496 (768)
T 3rgz_A 438 ----------L--GSLSKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--------NCTNLNWIS 496 (768)
T ss_dssp ----------G--GGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEE
T ss_pred ----------H--hcCCCCCEEECCCCc-ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh--------cCCCCCEEE
Confidence 0 125667777776554 3333455566777777777777643333333221 256677777
Q ss_pred cCcCccccccccCCccccCCCcceEeeecccCcccccCCccccccceeEEeeecc
Q 046345 1165 LDKLPRLRSFCLENYTLEFPSLERFSMKECRNMKTFSQGALFTPKLCKVQMIENE 1219 (1462)
Q Consensus 1165 l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~ 1219 (1462)
+++|.-...++. .+..+++|+.|++++|.-...+|..+..+++|+.|++++|+
T Consensus 497 L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 497 LSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred ccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 766653323332 34566677777777765555666666666677777776665
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-36 Score=392.76 Aligned_cols=489 Identities=18% Similarity=0.105 Sum_probs=285.0
Q ss_pred cCcEEEEccCCCCcc----CCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCC-CCCc--cc
Q 046345 518 EDPIAISLPHRDIEV----LPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFS-SLPS--SL 589 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~----l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp~--~i 589 (1462)
..|+.+.+.+..+.. ++.. ..++.|+.+++..+. +..+|.. |.++++|++|||++|.+. .+|. .+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~------~~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l 122 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH------INGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSL 122 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSC------EEECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCC------cCCCchh-hccCCCCCEEECCCCcCCCcCCChHHH
Confidence 358889998877654 3332 455666666665544 3344444 789999999999999997 5777 89
Q ss_pred CCCCcCcEEEecCcccCC--cccc-ccccCCcEEEecCCCCCccch-h---hccccccCEEccCCcccccccCccccccc
Q 046345 590 GRLTSLQTLCLHWCELED--IAIV-GQLKKLEILSFRDSDIKELPL-E---IGLLTRLSLLDLSDCWSLEVIAPNVISKL 662 (1462)
Q Consensus 590 ~~L~~Lr~L~L~~~~l~~--~~~i-~~L~~L~~L~L~~~~i~~lp~-~---i~~L~~L~~L~L~~~~~l~~~p~~~l~~L 662 (1462)
+++++|++|+|++|.+.. |..+ .++++|++|++++|.++..+. . ++++++|++|++++| .+....+ ++++
T Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l 199 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVD--VSRC 199 (768)
T ss_dssp GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS-EEESCCB--CTTC
T ss_pred hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC-cccccCC--cccC
Confidence 999999999999999876 4444 899999999999999986544 4 789999999999998 4555444 5899
Q ss_pred cccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCcc--ccccccceeEEEEccccCCcccCcccc
Q 046345 663 SRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD--LVFMELERYRICIGKKWDSWSVKSETS 740 (1462)
Q Consensus 663 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~~~~~~~~~~~~~~l 740 (1462)
++|++|++++|.... .+..++.+++|++|+++.|.+...... ..+.+|+.|
T Consensus 200 ~~L~~L~Ls~n~l~~---------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L------------------ 252 (768)
T 3rgz_A 200 VNLEFLDVSSNNFST---------GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL------------------ 252 (768)
T ss_dssp TTCCEEECCSSCCCS---------CCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE------------------
T ss_pred CcCCEEECcCCcCCC---------CCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE------------------
Confidence 999999999987632 122388999999999998876532211 222333333
Q ss_pred ceEEEccCcch-hHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccc
Q 046345 741 RFMKLQGLEKV-SILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVF 819 (1462)
Q Consensus 741 ~~l~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~ 819 (1462)
++.++... .++.. .+++|++|++.++.....+...+ ...+++|++|+++++.-...++. ....+
T Consensus 253 ---~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~--~~~~~~L~~L~Ls~n~l~~~~p~-------~~~~l 317 (768)
T 3rgz_A 253 ---NISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFL--SGACDTLTGLDLSGNHFYGAVPP-------FFGSC 317 (768)
T ss_dssp ---ECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCS--CTTCTTCSEEECCSSEEEECCCG-------GGGGC
T ss_pred ---ECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHH--HhhcCcCCEEECcCCcCCCccch-------HHhcC
Confidence 22222110 00000 23456666665543222222111 11235666666665432211111 22345
Q ss_pred cccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhc-cCCEEEEecccCccccccCCCCcc
Q 046345 820 PLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLL-RLQKAEVDYCENLEMIVGPKNPTT 898 (1462)
Q Consensus 820 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~-~L~~L~l~~c~~l~~~~~~~~~~~ 898 (1462)
++|+.|++.++.-...++...+ ..+++|++|++++|.--..+|. .+..++ +|+.|++++|.-...++...
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l---~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~~~~~~---- 388 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTL---LKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFSGPILPNL---- 388 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHH---TTCTTCCEEECCSSEEEECCCT--THHHHTTTCSEEECCSSEEEEECCTTT----
T ss_pred CCccEEECCCCcccCcCCHHHH---hcCCCCCEEeCcCCccCccccH--HHHhhhcCCcEEEccCCCcCCCcChhh----
Confidence 5666666665422112222111 3456666666666532223333 334444 66666666543211111100
Q ss_pred cccccceeccCCCcccccccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEE
Q 046345 899 TLGFKEIIAEDDPIQKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLE 978 (1462)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 978 (1462)
....+++|+.|++++|.-...++.. +..+++|+.|++++|.- +.. .+..+.++++|+.|+
T Consensus 389 --------------~~~~~~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l-~~~-~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 389 --------------CQNPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYL-SGT-IPSSLGSLSKLRDLK 448 (768)
T ss_dssp --------------TCSTTCCCCEEECCSSEEEEECCGG----GGGCTTCCEEECCSSEE-ESC-CCGGGGGCTTCCEEE
T ss_pred --------------hhcccCCccEEECCCCccccccCHH----HhcCCCCCEEECcCCcc-cCc-ccHHHhcCCCCCEEE
Confidence 0012456677777666222122221 34566677777766642 222 134456666777777
Q ss_pred EecccccceecccCCCCCCcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCcceeecc
Q 046345 979 IRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFIST 1058 (1462)
Q Consensus 979 i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 1058 (1462)
+++|.....+|. .+..+++|+.|+++++.-...++.. +..+++|+.|++++|.-...+|..
T Consensus 449 L~~n~l~~~~p~------------~~~~l~~L~~L~L~~N~l~~~~p~~-------l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 449 LWLNMLEGEIPQ------------ELMYVKTLETLILDFNDLTGEIPSG-------LSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp CCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCCSCCCGG-------GGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCCCcccCcCCH------------HHcCCCCceEEEecCCcccCcCCHH-------HhcCCCCCEEEccCCccCCcCChH
Confidence 766654444443 3556666777777665433233321 455666777777666532222221
Q ss_pred ccCCcccccccccccccccchhhccccCcccccccccccccccCCcEEEEecCCCcccccCcCcCCCCCccEEEEccccc
Q 046345 1059 ISSEDNAHTEMQTQPFFDEKLSIYYAINLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFKLSYCKK 1138 (1462)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~C~~ 1138 (1462)
+ ..+++|+.|++++|. +....|..+..+++|+.|++++|+-
T Consensus 510 ~--------------------------------------~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 510 I--------------------------------------GRLENLAILKLSNNS-FSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp G--------------------------------------GGCTTCCEEECCSSC-CEEECCGGGGGCTTCCEEECCSSEE
T ss_pred H--------------------------------------hcCCCCCEEECCCCc-ccCcCCHHHcCCCCCCEEECCCCcc
Confidence 1 236778888887664 4444577788888888888888765
Q ss_pred ceeeecc
Q 046345 1139 IEEIIGH 1145 (1462)
Q Consensus 1139 l~~i~~~ 1145 (1462)
...+|..
T Consensus 551 ~g~ip~~ 557 (768)
T 3rgz_A 551 NGTIPAA 557 (768)
T ss_dssp ESBCCGG
T ss_pred CCcCChH
Confidence 4455543
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.4e-34 Score=354.78 Aligned_cols=283 Identities=19% Similarity=0.213 Sum_probs=222.9
Q ss_pred cchhHHHHHHHHHHhcc-CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCe-EEEEEecCCCCHHHHHHHHHHHhCCC
Q 046345 159 FDSRMKVFQDVVEAAKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDK-VVMAEVTQTPDHQKIQDKLAFDLGME 236 (1462)
Q Consensus 159 ~~gr~~~~~~l~~~l~~-~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~ 236 (1462)
.+||++++++|.+++.+ +..++|+|+||||+||||||+.++++.++..+|+. ++|+++++.++...++..|+..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999875 55789999999999999999999998766788986 99999999999888888877754211
Q ss_pred ---CC--CC--cC----hHHHHHHHHHHH--HccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 237 ---FG--LN--EN----TFQKAYRLCERL--KKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 237 ---~~--~~--~~----~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
.. .. .. ..+....+...+ ..++|+||||||||+...|+.+. +|++||||||++
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------------LSCKILLTTRFK 275 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------------SSCCEEEECSCS
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC--------------CCeEEEEeccCh
Confidence 11 00 01 122233344433 14799999999999988877541 589999999999
Q ss_pred hhhhhccCCCceEEcc------CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHhcC--CHHH
Q 046345 304 DLLEKDMKSQKNFLIE------VLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALKSK--SLDF 375 (1462)
Q Consensus 304 ~v~~~~~~~~~~~~l~------~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~--~~~~ 375 (1462)
.++. .......++++ +|+.+|||+||.+..+.. ..++..+| |+|+||||+++|++|+++ +.+.
T Consensus 276 ~Va~-~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHH-HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHH-hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 9873 22222356666 899999999999987532 23344444 999999999999999988 6788
Q ss_pred HHHHHHHHhcCccccccchhhHHHHHHHHhhhccChHHH-HHHHHHhcccCCCcccChhHHHHHHhccccccccccHHHH
Q 046345 376 WKDALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEEA-KSLFLLCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLEEA 454 (1462)
Q Consensus 376 w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cf~~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~ 454 (1462)
|... ....+..+|.+||+.||+ +. |+||+|||+||+++.|+.+.++.+|+++|- +
T Consensus 347 W~~~--------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e-- 402 (1221)
T 1vt4_I 347 WKHV--------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S-- 402 (1221)
T ss_dssp HHHC--------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H--
T ss_pred HhcC--------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H--
Confidence 8642 136799999999999997 67 999999999999999999999999999871 1
Q ss_pred HHHHHHHHHHHHHccccccCCCCCcEEEcchHHHHH
Q 046345 455 RSRVHTLIDILKASCLLSDGDAEDEVKMHDIIHVVA 490 (1462)
Q Consensus 455 ~~~~~~~~~~L~~~~l~~~~~~~~~~~mH~lv~~~a 490 (1462)
...+++++|+++||++..+...+|+|||++++++
T Consensus 403 --dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 --DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp --HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred --HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 2445789999999998865667899999999855
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-32 Score=352.60 Aligned_cols=436 Identities=18% Similarity=0.163 Sum_probs=250.5
Q ss_pred EEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEe
Q 046345 522 AISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCL 600 (1462)
Q Consensus 522 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L 600 (1462)
.+..++..+..+|.... +++++|++.+|. +..++...|.++++|++|+|++|.+..+ |..|+++++|++|+|
T Consensus 8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP-TNITVLNLTHNQ------LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80 (680)
T ss_dssp EEECCSSCCSSCCSCSC-TTCSEEECCSSC------CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC
T ss_pred eeECCCCCccccccccC-CCCcEEECCCCC------CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEEC
Confidence 45666777777886543 789999999887 5778887889999999999999999877 667899999999999
Q ss_pred cCcccCC-c-cccccccCCcEEEecCCCCCccc-hhhccccccCEEccCCcccccccCccccccccccceeeccCccccc
Q 046345 601 HWCELED-I-AIVGQLKKLEILSFRDSDIKELP-LEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQW 677 (1462)
Q Consensus 601 ~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 677 (1462)
++|.++. | ..|+++++|++|++++|.++.+| ..++++++|++|++++| .+...++..++++++|++|++++|.+..
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccc
Confidence 9999888 4 46999999999999999999887 46889999999999998 5677666668899999999998886521
Q ss_pred ccccCCCccchHhhh--cCCCCcEEEEEeecccCCCcc--ccccccceeEEEEccccCCcccCccccceEEEccCcch-h
Q 046345 678 DKVEGGSNARLDELK--ELSKLTTLEIHVRDAEILPQD--LVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKV-S 752 (1462)
Q Consensus 678 ~~~~~~~~~~~~~L~--~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~-~ 752 (1462)
.....+. .+++|+.|+++.|.+...++. ..+.+|+.+ .+...... .
T Consensus 160 --------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L---------------------~l~~~~l~~~ 210 (680)
T 1ziw_A 160 --------LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL---------------------FLNNVQLGPS 210 (680)
T ss_dssp --------BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE---------------------ECTTCCCHHH
T ss_pred --------cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh---------------------hccccccChh
Confidence 1223333 457899999988877655443 223333333 22222111 0
Q ss_pred HHHHHHH--HhccccceEeccccCcccccccccCCCCC--CCCcEEEEeecccceeeecCcCCCccccccccccceeccc
Q 046345 753 ILLWMKL--LLKRTEDLYLSKLKGVQNVVHELDDGEGF--PRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLT 828 (1462)
Q Consensus 753 ~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~l~~l~~l--~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~ 828 (1462)
....+.. ..++|+.|++.++......... +..+ ++|++|+++++. +..++.. ....+++|+.|++.
T Consensus 211 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~---~~~l~~~~L~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTT---FLGLKWTNLTMLDLSYNN-LNVVGND------SFAWLPQLEYFFLE 280 (680)
T ss_dssp HHHHHHHHHTTSCCCEEECTTSCCCEECTTT---TGGGGGSCCCEEECTTSC-CCEECTT------TTTTCTTCCEEECC
T ss_pred hHHHHHHHhhhccccEEEccCCcccccChhH---hhccCcCCCCEEECCCCC-cCccCcc------cccCcccccEeeCC
Confidence 1111111 1256677777655332221111 2223 347777777654 2222111 12345667777776
Q ss_pred ccccccccccccccCCCcCCCcCEEEEecCCCCC-----ccCCH--HHHHHhccCCEEEEecccCccccccCCCCccccc
Q 046345 829 NLINLETICDSPLTEDHSFINLRIIKVKACEKLK-----HLFSF--SMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLG 901 (1462)
Q Consensus 829 ~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-----~l~~~--~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 901 (1462)
++ .+..+....+ ..+++|+.|.+.++..-. .+|.. ..+..+++|++|+++++. +..+...
T Consensus 281 ~n-~l~~~~~~~~---~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~-------- 347 (680)
T 1ziw_A 281 YN-NIQHLFSHSL---HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSN-------- 347 (680)
T ss_dssp SC-CBSEECTTTT---TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTT--------
T ss_pred CC-ccCccChhhh---cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChh--------
Confidence 63 3433332222 346666666665532111 11100 023445566666666543 2221111
Q ss_pred ccceeccCCCcccccccccceeeccccc-ccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEe
Q 046345 902 FKEIIAEDDPIQKAIFPRLEELELKRLA-NIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIR 980 (1462)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~ 980 (1462)
....+++|+.|++++|. .+..++...+.. ...++|+.|++++|. ++.+ .+..+..+++|+.|+++
T Consensus 348 -----------~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~-~~~~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 348 -----------MFTGLINLKYLSLSNSFTSLRTLTNETFVS-LAHSPLHILNLTKNK-ISKI-ESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp -----------TTTTCTTCCEEECTTCBSCCCEECTTTTGG-GTTSCCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECC
T ss_pred -----------HhccccCCcEEECCCCchhhhhcchhhhcc-cccCcCceEECCCCC-CCeE-ChhhhhCCCCCCEEeCC
Confidence 11345566666666552 122222221110 012456666666554 2222 22345556666666666
Q ss_pred cccccceecccCCCCCCcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEecc
Q 046345 981 CCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDC 1049 (1462)
Q Consensus 981 ~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c 1049 (1462)
+|.....++.. .+..+++|++|+++++. +..++.. .+..+++|+.|++.+|
T Consensus 414 ~N~l~~~~~~~-----------~~~~l~~L~~L~Ls~n~-l~~~~~~------~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 414 LNEIGQELTGQ-----------EWRGLENIFEIYLSYNK-YLQLTRN------SFALVPSLQRLMLRRV 464 (680)
T ss_dssp SSCCEEECCSG-----------GGTTCTTCCEEECCSCS-EEECCTT------TTTTCTTCCEEECTTS
T ss_pred CCcCccccCcc-----------cccCcccccEEecCCCC-cceeChh------hhhcCcccccchhccc
Confidence 64432233211 34455666666666543 3332221 1334556666666554
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-33 Score=392.29 Aligned_cols=313 Identities=18% Similarity=0.264 Sum_probs=247.3
Q ss_pred CCccccchhHHHHHHHHHHhc--cCCceEEEEEecCCCcHHHHHHHHHHHHhh-cc-CCCeEEEEEecCCCC--HHHHHH
Q 046345 154 KDYEAFDSRMKVFQDVVEAAK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVME-DK-SFDKVVMAEVTQTPD--HQKIQD 227 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~~~ 227 (1462)
.+...|+||++++++|.+.|. +++.++|+|+||||+||||||++++++.+. .. .++.++|++++...+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 344679999999999999995 467889999999999999999999988643 23 557899999988644 344466
Q ss_pred HHHHHhCCCCCC----CcChHHHHHHHHHHHHccC--cEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEec
Q 046345 228 KLAFDLGMEFGL----NENTFQKAYRLCERLKKEK--KVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSR 301 (1462)
Q Consensus 228 ~i~~~l~~~~~~----~~~~~~~~~~l~~~l~~~k--~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr 301 (1462)
.++..++..... .....+....+...+ .++ ||||||||||+..+|+.+ .+|++||||||
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~LlvlDd~~~~~~~~~~--------------~~~~~ilvTtR 265 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLM-LRKHPRSLLILDDVWDPWVLKAF--------------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT-SSSSCSCEEEEESCCCHHHHTTT--------------CSSCEEEEEES
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHH-hccCCCEEEEEecCCCHHHHHhh--------------cCCCEEEEEcC
Confidence 677776654321 223344444555554 445 999999999998776653 36899999999
Q ss_pred chhhhhhccCCCceEEccC-CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHhcCCHHHHHHHH
Q 046345 302 NRDLLEKDMKSQKNFLIEV-LSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALKSKSLDFWKDAL 380 (1462)
Q Consensus 302 ~~~v~~~~~~~~~~~~l~~-L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~ 380 (1462)
++.++.........+++.+ |+.+||++||...++. ..++..+++++|+++|+|+||||+++|++|+.+. ..|...+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l 342 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYL 342 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHH
Confidence 9999844456677899996 9999999999998853 3455677899999999999999999999999875 4799999
Q ss_pred HHHhcCcccccc----chhhHHHHHHHHhhhccChHHHHHHHHHhcccCCCcccChhHHHHHHhccccccccccHHHHHH
Q 046345 381 YRLRSSNAREIH----GMRANVFTSIELSYNLLEIEEAKSLFLLCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLEEARS 456 (1462)
Q Consensus 381 ~~l~~~~~~~~~----~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~~~ 456 (1462)
+++.......+. .....+..+|.+||+.||+ +.|+||+|||+||+++.|+++.++.+|.+++ .
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~ 409 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET------------E 409 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------H
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------H
Confidence 988765543221 2235799999999999997 7999999999999999999999999997653 2
Q ss_pred HHHHHHHHHHHccccccC--CCCCcEEEcchHHHHHHHHhccc
Q 046345 457 RVHTLIDILKASCLLSDG--DAEDEVKMHDIIHVVAVSIATEK 497 (1462)
Q Consensus 457 ~~~~~~~~L~~~~l~~~~--~~~~~~~mH~lv~~~a~~~~~~~ 497 (1462)
...+++++|++++|++.. +...+|+||++||+||+..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 345578999999999754 23346999999999999997764
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-32 Score=357.63 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=126.7
Q ss_pred EEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC--ccccccccCCcEE
Q 046345 544 LFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED--IAIVGQLKKLEIL 620 (1462)
Q Consensus 544 ~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L 620 (1462)
+++..++. +..+|..+. +++++|+|++|.++.+|. .|.++++|++|++++|.+.. |..++++++|++|
T Consensus 8 ~~~cs~~~------L~~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 78 (680)
T 1ziw_A 8 VADCSHLK------LTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78 (680)
T ss_dssp EEECCSSC------CSSCCSCSC---TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred eeECCCCC------ccccccccC---CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence 44555444 567776542 789999999999999875 69999999999999999987 6789999999999
Q ss_pred EecCCCCCccch-hhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcE
Q 046345 621 SFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTT 699 (1462)
Q Consensus 621 ~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 699 (1462)
++++|.++.+|. .++++++|++|++++| .+..+++..++++++|++|++++|.... ..+..++.+++|++
T Consensus 79 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 79 NLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS--------TKLGTQVQLENLQE 149 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSC--------CCCCSSSCCTTCCE
T ss_pred ECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccc--------cCchhhcccccCCE
Confidence 999999999997 5899999999999998 6888887779999999999999987632 22345678999999
Q ss_pred EEEEeecccCCCc
Q 046345 700 LEIHVRDAEILPQ 712 (1462)
Q Consensus 700 L~l~~~~~~~~~~ 712 (1462)
|+++.|.+...+.
T Consensus 150 L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 150 LLLSNNKIQALKS 162 (680)
T ss_dssp EECCSSCCCCBCH
T ss_pred EEccCCcccccCH
Confidence 9999887766554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4e-31 Score=337.82 Aligned_cols=178 Identities=16% Similarity=0.203 Sum_probs=140.1
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLC 599 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~ 599 (1462)
+.+...+..+..+|... .+++++|++.+|. +..++...|.++++|++|++++|.++.+ |..|.++++|++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDI-PSSTKNIDLSFNP------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CceEccCCCcccCCCCC-CCCcCEEECCCCC------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeE
Confidence 45677777888888754 3889999998887 5677777789999999999999999887 56789999999999
Q ss_pred ecCcccCC--ccccccccCCcEEEecCCCCCccc-hhhccccccCEEccCCcccccc--cCccccccccccceeeccCcc
Q 046345 600 LHWCELED--IAIVGQLKKLEILSFRDSDIKELP-LEIGLLTRLSLLDLSDCWSLEV--IAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 600 L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
|++|.+.. |..|+++++|++|++++|.++.+| ..++++++|++|++++| .+.. +|.. ++++++|++|++++|.
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCc
Confidence 99999887 678999999999999999998876 67889999999999998 4553 4555 8999999999999886
Q ss_pred cccccccCCCccchHhhhcCCC-CcEEEEEeecccCCCc
Q 046345 675 SQWDKVEGGSNARLDELKELSK-LTTLEIHVRDAEILPQ 712 (1462)
Q Consensus 675 ~~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~ 712 (1462)
+.... ...+..+.+++. +..|+++.|.+..++.
T Consensus 165 l~~~~-----~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 165 IQTIT-----VNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp CCEEC-----TTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred ceecC-----hhhhhhhhccccccceeeccCCCcceeCc
Confidence 63221 123445555554 5688888877765554
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=4.4e-31 Score=337.48 Aligned_cols=537 Identities=15% Similarity=0.115 Sum_probs=299.7
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLC 599 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~ 599 (1462)
+++...+.++..+|... .+++++|++.+|. +..+++..|.++++|++|+|++|.+..+ |..|+++++|++|+
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 87 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNV------LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCC------CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ceEECCCCCcccCcCCC-CCcCcEEEccCCc------cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeee
Confidence 35666666777777643 3578999999887 5677777789999999999999999876 67899999999999
Q ss_pred ecCcccCC--ccccccccCCcEEEecCCCCCcc-chhhccccccCEEccCCcccccccCccccccccccceeeccCcccc
Q 046345 600 LHWCELED--IAIVGQLKKLEILSFRDSDIKEL-PLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQ 676 (1462)
Q Consensus 600 L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 676 (1462)
|++|.+.. |..|+++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 88 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp CTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred CCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccc
Confidence 99999887 67899999999999999999987 567889999999999998 576664333566999999999988763
Q ss_pred cccccCCCccchHhhhcCCCCc--EEEEEeecccCCCcc-ccccccceeEEEEccccCCcccCccccceEEEccCcchhH
Q 046345 677 WDKVEGGSNARLDELKELSKLT--TLEIHVRDAEILPQD-LVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSI 753 (1462)
Q Consensus 677 ~~~~~~~~~~~~~~L~~l~~L~--~L~l~~~~~~~~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 753 (1462)
......++.+++|+ .|+++.|.+...++. ....+ ++.+.+.+.. ..
T Consensus 167 --------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~---------------------L~~L~l~~~~--~~ 215 (606)
T 3t6q_A 167 --------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV---------------------FQSLNFGGTQ--NL 215 (606)
T ss_dssp --------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCE---------------------EEEEECTTCS--CH
T ss_pred --------ccChhhhhhhcccceeEEecCCCccCccChhHhhhcc---------------------ccccccCCch--hH
Confidence 23346678888888 677766665544332 11112 2222222221 11
Q ss_pred HHHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccccc
Q 046345 754 LLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINL 833 (1462)
Q Consensus 754 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L 833 (1462)
+..+. .+..+ .+..+.+..+....... +....|..+
T Consensus 216 ~~~~~----~l~~~----------------------~l~~l~~~~~~~~~~~~-------i~~~~~~~l----------- 251 (606)
T 3t6q_A 216 LVIFK----GLKNS----------------------TIQSLWLGTFEDMDDED-------ISPAVFEGL----------- 251 (606)
T ss_dssp HHHHH----HTTTC----------------------EEEEEECCCCTTSCCCC-------CCGGGGGGG-----------
T ss_pred HHHhh----hcccc----------------------chhheechhhccccccc-------cChhHhchh-----------
Confidence 11111 11111 11112211111110000 000001000
Q ss_pred cccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcc
Q 046345 834 ETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQ 913 (1462)
Q Consensus 834 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1462)
.-.+|+.|+++++ .+..+++ ..+..+++|++|+++++. +..++..
T Consensus 252 ------------~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~lp~~-------------------- 296 (606)
T 3t6q_A 252 ------------CEMSVESINLQKH-YFFNISS-NTFHCFSGLQELDLTATH-LSELPSG-------------------- 296 (606)
T ss_dssp ------------GGSEEEEEECTTC-CCSSCCT-TTTTTCTTCSEEECTTSC-CSCCCSS--------------------
T ss_pred ------------hcCceeEEEeecC-ccCccCH-HHhccccCCCEEeccCCc-cCCCChh--------------------
Confidence 0013444444443 2333332 123445555555555542 2222110
Q ss_pred cccccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEecccccceecccCC
Q 046345 914 KAIFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNTG 993 (1462)
Q Consensus 914 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 993 (1462)
...+++|+.|+++++ .+..+.... +..+++|+.|++++|.....+ +...+..+++|++|++++|. +..+....
T Consensus 297 l~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~- 369 (606)
T 3t6q_A 297 LVGLSTLKKLVLSAN-KFENLCQIS---ASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDD-IETSDCCN- 369 (606)
T ss_dssp CCSCTTCCEEECTTC-CCSBGGGGC---GGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSC-CCEEEEST-
T ss_pred hcccccCCEEECccC-CcCcCchhh---hhccCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCc-cccccCcc-
Confidence 124556666666665 333332211 335667777777776543232 33446677777777777754 33331000
Q ss_pred CCCCcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCcceeeccccCCccccccccccc
Q 046345 994 LGRDEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISSEDNAHTEMQTQP 1073 (1462)
Q Consensus 994 ~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~ 1073 (1462)
..+..+++|++|+++++. +..+... .+..+++|++|++++|.-....+.
T Consensus 370 --------~~~~~l~~L~~L~l~~n~-l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~---------------- 418 (606)
T 3t6q_A 370 --------LQLRNLSHLQSLNLSYNE-PLSLKTE------AFKECPQLELLDLAFTRLKVKDAQ---------------- 418 (606)
T ss_dssp --------TTTTTCTTCCEEECCSCS-CEEECTT------TTTTCTTCSEEECTTCCEECCTTC----------------
T ss_pred --------hhcccCCCCCEEECCCCc-CCcCCHH------HhcCCccCCeEECCCCcCCCcccc----------------
Confidence 035567777777777753 3333221 145577888888877642111100
Q ss_pred ccccchhhccccCcccccccccccccccCCcEEEEecCCCcccccCcCcCCCCCccEEEEcccccceeeeccccccccCc
Q 046345 1074 FFDEKLSIYYAINLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGN 1153 (1462)
Q Consensus 1074 ~~~~~l~i~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~ 1153 (1462)
. ....+++|+.|++++|. +....|..+..+++|++|++++|+--...+.....
T Consensus 419 -------------------~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 471 (606)
T 3t6q_A 419 -------------------S--PFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS----- 471 (606)
T ss_dssp -------------------C--TTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-----
T ss_pred -------------------h--hhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccccchh-----
Confidence 0 01236778888886654 44445666788888888888887532211110000
Q ss_pred eeeeccccccccCcCccccccccCCccccCCCcceEeeecccCcccccCCccccccceeEEeeeccccccccccccchhh
Q 046345 1154 HIAFNELKFLELDKLPRLRSFCLENYTLEFPSLERFSMKECRNMKTFSQGALFTPKLCKVQMIENEEDDLHHWEGNLNST 1233 (1462)
Q Consensus 1154 ~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~l~~~ 1233 (1462)
-..+++|+.|++++| +++.+.. ..+..+++|+.|++++|.-....|..+..+++| .|++++|. +...
T Consensus 472 ~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~----------l~~~ 538 (606)
T 3t6q_A 472 LQTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH----------ISII 538 (606)
T ss_dssp GGGCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC----------CCCC
T ss_pred hccCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc----------cccc
Confidence 012455666666555 2333322 234455666666666654333444444445555 66666555 2222
Q ss_pred hHHHHHHHhhccceEEEEecCC
Q 046345 1234 IQKHYEEMCLNNLEVLEVRNCD 1255 (1462)
Q Consensus 1234 ~~~~~~~~~l~~L~~L~i~~c~ 1255 (1462)
.+ ..+.. +++|++|++++|+
T Consensus 539 ~~-~~~~~-l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 539 LP-SLLPI-LSQQRTINLRQNP 558 (606)
T ss_dssp CG-GGHHH-HHTSSEEECTTCC
T ss_pred CH-hhccc-CCCCCEEeCCCCC
Confidence 22 22223 5566666666665
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=2.3e-30 Score=330.82 Aligned_cols=476 Identities=14% Similarity=0.122 Sum_probs=262.3
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCcc-chh
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKEL-PLE 633 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~l-p~~ 633 (1462)
+..+|..+. ..+++|+|++|.++.+ |.+|+++++|++|+|++|.+.. |..|+++++|++|++++|.++.+ |..
T Consensus 24 l~~iP~~l~---~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 24 LNEIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp CSSCCTTSC---TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred cccCcCCCC---CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh
Confidence 567776542 4689999999999987 5689999999999999999887 67899999999999999999866 668
Q ss_pred hccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCcc
Q 046345 634 IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD 713 (1462)
Q Consensus 634 i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 713 (1462)
++++++|++|++++| .+..+++..++++++|++|++++|.+... .+..+..+++|++|+++.|.+..++..
T Consensus 101 ~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 101 LSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSI--------KLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp TSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCC--------CCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred hcccccccEeecccc-CcccCCcchhccCCcccEEECCCCccccc--------CcccccCCcccCEEEcccCcccccChh
Confidence 899999999999998 67777666689999999999998876321 112333478888888877655432211
Q ss_pred ccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhcccc--ceEeccccCcccccccccCCCCCCCC
Q 046345 714 LVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTE--DLYLSKLKGVQNVVHELDDGEGFPRL 791 (1462)
Q Consensus 714 ~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~--~L~L~~~~~~~~~~~~l~~l~~l~~L 791 (1462)
....+++|+ .|++.++........ ....+.|
T Consensus 172 -------------------------------------------~~~~l~~L~~l~L~l~~n~l~~~~~~----~~~~~~L 204 (606)
T 3t6q_A 172 -------------------------------------------DMSSLQQATNLSLNLNGNDIAGIEPG----AFDSAVF 204 (606)
T ss_dssp -------------------------------------------HHHTTTTCCSEEEECTTCCCCEECTT----TTTTCEE
T ss_pred -------------------------------------------hhhhhcccceeEEecCCCccCccChh----Hhhhccc
Confidence 000112222 222222211111100 1122344
Q ss_pred cEEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCC--ccCCHHH
Q 046345 792 NRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLK--HLFSFSM 869 (1462)
Q Consensus 792 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~--~l~~~~~ 869 (1462)
+.|++.++..+.. .+..+.. ..++.+.+..+..+. .+++ ..
T Consensus 205 ~~L~l~~~~~~~~-------------~~~~l~~-----------------------~~l~~l~~~~~~~~~~~~i~~-~~ 247 (606)
T 3t6q_A 205 QSLNFGGTQNLLV-------------IFKGLKN-----------------------STIQSLWLGTFEDMDDEDISP-AV 247 (606)
T ss_dssp EEEECTTCSCHHH-------------HHHHTTT-----------------------CEEEEEECCCCTTSCCCCCCG-GG
T ss_pred cccccCCchhHHH-------------Hhhhccc-----------------------cchhheechhhccccccccCh-hH
Confidence 4444444331110 0111111 111222222222111 1111 12
Q ss_pred HHHhc--cCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeecccccccccccccCCCcccCCCC
Q 046345 870 AKNLL--RLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQN 947 (1462)
Q Consensus 870 ~~~L~--~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 947 (1462)
+..+. +|+.|+++++. +..+.... ...+++|+.|+++++ .++.++.. +..+++
T Consensus 248 ~~~l~~~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n-~l~~lp~~----l~~l~~ 302 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHY-FFNISSNT-------------------FHCFSGLQELDLTAT-HLSELPSG----LVGLST 302 (606)
T ss_dssp GGGGGGSEEEEEECTTCC-CSSCCTTT-------------------TTTCTTCSEEECTTS-CCSCCCSS----CCSCTT
T ss_pred hchhhcCceeEEEeecCc-cCccCHHH-------------------hccccCCCEEeccCC-ccCCCChh----hccccc
Confidence 22222 56777777653 33332211 135677777777777 55555433 346677
Q ss_pred ceEEEEecCCCcCccCchhhhhhcccCcEEEEecccccceecccCCCCCCcccccccccccccceeeecCCccccccccC
Q 046345 948 LTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTSFANM 1027 (1462)
Q Consensus 948 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~ 1027 (1462)
|+.|++++|. ++.+ ++..+.++++|++|++++|.....++.. .+..+++|++|+++++. ++.....
T Consensus 303 L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----------~~~~l~~L~~L~l~~n~-l~~~~~~ 368 (606)
T 3t6q_A 303 LKKLVLSANK-FENL-CQISASNFPSLTHLSIKGNTKRLELGTG-----------CLENLENLRELDLSHDD-IETSDCC 368 (606)
T ss_dssp CCEEECTTCC-CSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSS-----------TTTTCTTCCEEECCSSC-CCEEEES
T ss_pred CCEEECccCC-cCcC-chhhhhccCcCCEEECCCCCcccccchh-----------hhhccCcCCEEECCCCc-cccccCc
Confidence 7777777765 3332 2345667777777777776544344321 35566777777777643 3333210
Q ss_pred CcccccccccCCCccEEEEeccCCcceeeccccCCcccccccccccccccchhhccccCcccccccccccccccCCcEEE
Q 046345 1028 GHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISSEDNAHTEMQTQPFFDEKLSIYYAINLTKILHHLLASESFSKLKNLV 1107 (1462)
Q Consensus 1028 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~~~~~~~~~~~l~~L~~L~ 1107 (1462)
...+..+++|++|++++|.- ..++. ..+ ..+++|+.|+
T Consensus 369 ----~~~~~~l~~L~~L~l~~n~l-~~~~~-----------------------------------~~~--~~l~~L~~L~ 406 (606)
T 3t6q_A 369 ----NLQLRNLSHLQSLNLSYNEP-LSLKT-----------------------------------EAF--KECPQLELLD 406 (606)
T ss_dssp ----TTTTTTCTTCCEEECCSCSC-EEECT-----------------------------------TTT--TTCTTCSEEE
T ss_pred ----chhcccCCCCCEEECCCCcC-CcCCH-----------------------------------HHh--cCCccCCeEE
Confidence 01144567777777766531 11110 000 1246677777
Q ss_pred EecCCCcccccCcC-cCCCCCccEEEEcccccceeeeccccccccCceeeeccccccccCcCccccc-cccCCccccCCC
Q 046345 1108 IFRCNNLMNIFPPL-VGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIAFNELKFLELDKLPRLRS-FCLENYTLEFPS 1185 (1462)
Q Consensus 1108 l~~c~~l~~~~~~~-l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-~~~~~~~~~~~~ 1185 (1462)
+++|. ++...|.. +..+++|+.|++++|. +...+...-. .+++|+.|+++++.--.. +.....+..+++
T Consensus 407 l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 407 LAFTR-LKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFD-------GLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp CTTCC-EECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTT-------TCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred CCCCc-CCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHh-------CCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 75543 33333333 6667777777777654 2222221110 246666666666532111 111123445566
Q ss_pred cceEeeecccCcccccCCccccccceeEEeeecc
Q 046345 1186 LERFSMKECRNMKTFSQGALFTPKLCKVQMIENE 1219 (1462)
Q Consensus 1186 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~ 1219 (1462)
|+.|++++|.-....|..+..+++|+.|++++|.
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 6666666654333334444445556666665554
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.6e-30 Score=330.28 Aligned_cols=508 Identities=18% Similarity=0.154 Sum_probs=305.6
Q ss_pred cCcEEEEccCCCCccCCc--cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCc
Q 046345 518 EDPIAISLPHRDIEVLPE--RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTS 594 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~ 594 (1462)
..++++.+.++.+..++. ...+++|++|++.+|. +..+++..|.++++|++|+|++|.++.+ |.+|+++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 569999999999988776 3589999999999987 5777777899999999999999999987 789999999
Q ss_pred CcEEEecCcccCC--ccccccccCCcEEEecCCCCC--ccchhhccccccCEEccCCcccccccCccccccccccc----
Q 046345 595 LQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIK--ELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLE---- 666 (1462)
Q Consensus 595 Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~---- 666 (1462)
|++|++++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++| .+..+++..++.+++|+
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCC
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccc
Confidence 9999999999987 478999999999999999998 57999999999999999998 68888777688888876
Q ss_pred eeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCC--Ccc-ccccccceeEEEEccccCCcccCccccceE
Q 046345 667 ELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEIL--PQD-LVFMELERYRICIGKKWDSWSVKSETSRFM 743 (1462)
Q Consensus 667 ~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~--~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l 743 (1462)
+|++++|.+.... .......+|+.|+++++..... +.. ..+.+++.+.+..+....
T Consensus 185 ~L~l~~n~l~~~~---------~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~------------ 243 (606)
T 3vq2_A 185 SLDMSLNPIDFIQ---------DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD------------ 243 (606)
T ss_dssp EEECTTCCCCEEC---------TTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT------------
T ss_pred eeeccCCCcceeC---------cccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc------------
Confidence 7999888763221 2222333788999887654310 100 112222222221110000
Q ss_pred EEccCcchhHHHHHHHHhccccceEeccccCccccc-ccccCCCCCCCCcEEEEeecccceeeecCcCCCcccccccccc
Q 046345 744 KLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQNVV-HELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLL 822 (1462)
Q Consensus 744 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L 822 (1462)
........ ..+..+..+ .++.+.+..
T Consensus 244 ----------------------------~~~l~~~~~~~~~~l~~l-~l~~l~l~~------------------------ 270 (606)
T 3vq2_A 244 ----------------------------ERNLEIFEPSIMEGLCDV-TIDEFRLTY------------------------ 270 (606)
T ss_dssp ----------------------------SCCCSCCCGGGGTTGGGS-EEEEEEECC------------------------
T ss_pred ----------------------------CCcccccChHHhhhhhhc-cHhheeccc------------------------
Confidence 00000000 000000000 122222221
Q ss_pred ceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccc
Q 046345 823 ESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGF 902 (1462)
Q Consensus 823 ~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 902 (1462)
...+...... ...+++|+.|.+.++. +..++ .+..+++|++|++++|.. ..++.
T Consensus 271 -------~~~~~~~~~~----~~~l~~L~~L~l~~~~-~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~---------- 324 (606)
T 3vq2_A 271 -------TNDFSDDIVK----FHCLANVSAMSLAGVS-IKYLE---DVPKHFKWQSLSIIRCQL-KQFPT---------- 324 (606)
T ss_dssp -------CTTCCGGGGS----CGGGTTCSEEEEESCC-CCCCC---CCCTTCCCSEEEEESCCC-SSCCC----------
T ss_pred -------cccccccccc----cccCCCCCEEEecCcc-chhhh---hccccccCCEEEcccccC-ccccc----------
Confidence 1111111111 0234444444444432 23332 223344555555554432 21110
Q ss_pred cceeccCCCcccccccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccC-chhhhhhcccCcEEEEec
Q 046345 903 KEIIAEDDPIQKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVF-SHSMVNNLVQIQHLEIRC 981 (1462)
Q Consensus 903 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~-~~~~~~~l~~L~~L~i~~ 981 (1462)
. .+++|+.|+++++..+..++ ...+++|+.|++++|. ++... .+..+..+++|++|++++
T Consensus 325 -----------~-~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 325 -----------L-DLPFLKSLTLTMNKGSISFK------KVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp -----------C-CCSSCCEEEEESCSSCEECC------CCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCS
T ss_pred -----------C-CCCccceeeccCCcCccchh------hccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCC
Confidence 0 34455555555553332221 2255666666666654 22211 134456667777777776
Q ss_pred ccccceecccCCCCCCcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCcceeeccccC
Q 046345 982 CESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISS 1061 (1462)
Q Consensus 982 c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 1061 (1462)
|. +..++. .+..+++|+.|+++++. +...... ..+..+++|+.|++++|.-....|..
T Consensus 386 n~-l~~~~~------------~~~~l~~L~~L~l~~n~-l~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~--- 443 (606)
T 3vq2_A 386 NG-AIIMSA------------NFMGLEELQHLDFQHST-LKRVTEF-----SAFLSLEKLLYLDISYTNTKIDFDGI--- 443 (606)
T ss_dssp CS-EEEECC------------CCTTCTTCCEEECTTSE-EESTTTT-----TTTTTCTTCCEEECTTSCCEECCTTT---
T ss_pred Cc-cccchh------------hccCCCCCCeeECCCCc-cCCccCh-----hhhhccccCCEEECcCCCCCccchhh---
Confidence 54 444442 45567777777777653 2222211 11445777777777776522211110
Q ss_pred CcccccccccccccccchhhccccCcccccccccccccccCCcEEEEecCCCcccccCcCcCCCCCccEEEEccccccee
Q 046345 1062 EDNAHTEMQTQPFFDEKLSIYYAINLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFKLSYCKKIEE 1141 (1462)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~l~i~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~C~~l~~ 1141 (1462)
+ ..+++|+.|++++|.......|..++.+++|+.|++++|. +..
T Consensus 444 ---------------------------------~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~ 487 (606)
T 3vq2_A 444 ---------------------------------F--LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQ 487 (606)
T ss_dssp ---------------------------------T--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCE
T ss_pred ---------------------------------h--cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCc
Confidence 0 1256777777766543332356667778888888888764 444
Q ss_pred eeccccccccCceeeeccccccccCcCccccccccCCccccCCCcceEeeecccCcccccCCccccc-cceeEEeeecc
Q 046345 1142 IIGHVGEEVKGNHIAFNELKFLELDKLPRLRSFCLENYTLEFPSLERFSMKECRNMKTFSQGALFTP-KLCKVQMIENE 1219 (1462)
Q Consensus 1142 i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~L~l~~c~ 1219 (1462)
++...-. .+++|+.|+++++ +++.+.. ..+..+++|+.|++++|. ++.+|..+..++ +|+.|++++|+
T Consensus 488 ~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 488 ISWGVFD-------TLHRLQLLNMSHN-NLLFLDS-SHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ECTTTTT-------TCTTCCEEECCSS-CCSCEEG-GGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred cChhhhc-------ccccCCEEECCCC-cCCCcCH-HHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 4332211 2577888888776 3444422 245678889999998864 778888766665 59999999877
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=325.01 Aligned_cols=307 Identities=19% Similarity=0.292 Sum_probs=232.2
Q ss_pred ccccchhHHHHHHHHHHhc--cCCceEEEEEecCCCcHHHHHHHHHHHHhh-ccCC-CeEEEEEecCCCCHHHHHHHH--
Q 046345 156 YEAFDSRMKVFQDVVEAAK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVME-DKSF-DKVVMAEVTQTPDHQKIQDKL-- 229 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~--~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~i-- 229 (1462)
...|+||+.+++.|.+++. ++..++|+|+|+||+||||||+.++++... ..+| +.++|++++.. +...+...+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 3569999999999999997 356789999999999999999999987654 5678 58999999876 333344433
Q ss_pred -HHHhCCCC----CCCcChHHHHHHHHHHHHc-cCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 230 -AFDLGMEF----GLNENTFQKAYRLCERLKK-EKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 230 -~~~l~~~~----~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
+..++... ............+...+.+ .+++||||||+|+...++.+ .+|++||||||+.
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------------CSSCEEEEEESCG
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------------cCCCeEEEECCCc
Confidence 44554211 1122334445555555543 27999999999986655432 3588999999999
Q ss_pred hhhhhccCCCceEEc---cCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHHhcCCHHHHHHHH
Q 046345 304 DLLEKDMKSQKNFLI---EVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANALKSKSLDFWKDAL 380 (1462)
Q Consensus 304 ~v~~~~~~~~~~~~l---~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~ 380 (1462)
.++.. .. ...+++ ++|+.+||+++|...++.. .....+.+.+|+++|+|+|+||+++|++++.+. ..|..++
T Consensus 268 ~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l 342 (591)
T 1z6t_A 268 SVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYL 342 (591)
T ss_dssp GGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHh-cC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHH
Confidence 88732 22 344555 5899999999999998742 223356889999999999999999999998773 3688888
Q ss_pred HHHhcCccccc----cchhhHHHHHHHHhhhccChHHHHHHHHHhcccCCCcccChhHHHHHHhccccccccccHHHHHH
Q 046345 381 YRLRSSNAREI----HGMRANVFTSIELSYNLLEIEEAKSLFLLCGLYSEGHAIQVPSLLRYGMGLCLFENVYKLEEARS 456 (1462)
Q Consensus 381 ~~l~~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~fp~~~~i~~~~Li~~W~a~g~~~~~~~~~~~~~ 456 (1462)
+.+.......+ ......+..++..||+.||+ +.|.||.++|+||+++.|+.+.+...|.+++ +
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~---- 409 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET--------E---- 409 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------H----
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH--------H----
Confidence 88876543211 12235799999999999997 7899999999999999999999999996542 2
Q ss_pred HHHHHHHHHHHccccccC--CCCCcEEEcchHHHHHHHHhc
Q 046345 457 RVHTLIDILKASCLLSDG--DAEDEVKMHDIIHVVAVSIAT 495 (1462)
Q Consensus 457 ~~~~~~~~L~~~~l~~~~--~~~~~~~mH~lv~~~a~~~~~ 495 (1462)
...++++.|++++|++.. +...+|+||++||++++..+.
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 235578899999999743 334589999999999998743
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=320.33 Aligned_cols=170 Identities=16% Similarity=0.110 Sum_probs=128.8
Q ss_pred EEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCC-CCCC-CcccCCCCcCcEEE
Q 046345 522 AISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIH-FSSL-PSSLGRLTSLQTLC 599 (1462)
Q Consensus 522 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~-i~~l-p~~i~~L~~Lr~L~ 599 (1462)
.+.-+++++..+|. ..+++++|++++|. +..++...|.++++|++|+|++|. +..+ |..|+++++|++|+
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNY------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCC------CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCc------CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 34455667777887 56889999998887 566666668899999999999985 4466 67889999999999
Q ss_pred ecCcccCC--ccccccccCCcEEEecCCCCCc-cchh--hccccccCEEccCCcccccccC-ccccccccccceeeccCc
Q 046345 600 LHWCELED--IAIVGQLKKLEILSFRDSDIKE-LPLE--IGLLTRLSLLDLSDCWSLEVIA-PNVISKLSRLEELYMGGS 673 (1462)
Q Consensus 600 L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~ 673 (1462)
|++|.+.. |..|+++++|++|++++|.++. +|.. ++++++|++|++++| .+..++ +..++++++|++|++++|
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence 99998877 6788999999999999998875 5555 888999999999988 455543 345888999999998887
Q ss_pred ccccccccCCCccchHhhhcC--CCCcEEEEEeeccc
Q 046345 674 FSQWDKVEGGSNARLDELKEL--SKLTTLEIHVRDAE 708 (1462)
Q Consensus 674 ~~~~~~~~~~~~~~~~~L~~l--~~L~~L~l~~~~~~ 708 (1462)
.+... ....+..+ ++|+.|+++.|...
T Consensus 159 ~i~~~--------~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 159 QIFLV--------CEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCCCC--------CSGGGHHHHHCSSCCCEECCSBSC
T ss_pred cCCee--------CHHHcccccCCccceEECCCCccc
Confidence 65321 22334444 78888888877654
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=4.4e-28 Score=305.86 Aligned_cols=169 Identities=18% Similarity=0.206 Sum_probs=114.9
Q ss_pred EccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEEecC
Q 046345 524 SLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLHW 602 (1462)
Q Consensus 524 sl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~ 602 (1462)
...++.+..+|... .+++++|++.+|. +..++...|.++++|++|++++|.++.++ ..|+++++|++|++++
T Consensus 11 ~~~~~~l~~ip~~~-~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 11 DGRSRSFTSIPSGL-TAAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp ECTTSCCSSCCSCC-CTTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ECCCCccccccccC-CCCccEEECcCCc------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 34455666666643 3677778777776 45555555777778888888888777664 5677777888888888
Q ss_pred cccCC-c-cccccccCCcEEEecCCCCCc--cchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccc
Q 046345 603 CELED-I-AIVGQLKKLEILSFRDSDIKE--LPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWD 678 (1462)
Q Consensus 603 ~~l~~-~-~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 678 (1462)
|.+.. + ..|+++++|++|++++|.++. .|..++++++|++|++++|..+..+|+..++++++|++|++++|.+.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-- 161 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-- 161 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC--
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc--
Confidence 77776 3 447777788888888777774 35667777788888877775466666555777777777777766542
Q ss_pred cccCCCccchHhhhcCCCCcEEEEEeecc
Q 046345 679 KVEGGSNARLDELKELSKLTTLEIHVRDA 707 (1462)
Q Consensus 679 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 707 (1462)
...+..++.+++|++|+++.+..
T Consensus 162 ------~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 162 ------NYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp ------EECTTTTTTCSEEEEEEEECSBS
T ss_pred ------ccChhhhhccccCceEecccCcc
Confidence 12334566666677776665543
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=303.63 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=119.0
Q ss_pred EEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEEec
Q 046345 523 ISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLH 601 (1462)
Q Consensus 523 lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~ 601 (1462)
+.-.+.++..+|... .+++++|++.+|. +..++...|.++++|++|+|++|.++.++ ..|.++++|++|+|+
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp EECCSSCCSSCCSSS-CSSCCEEECCSCC------CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred EEeCCCCccccCCCc-cccccEEEccCCc------cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 333444555666532 3568888887776 45666666788888888888888887764 467888888888888
Q ss_pred CcccCC--ccccccccCCcEEEecCCCCCccch-hhccccccCEEccCCcccccc--cCccccccccccceeeccCcccc
Q 046345 602 WCELED--IAIVGQLKKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEV--IAPNVISKLSRLEELYMGGSFSQ 676 (1462)
Q Consensus 602 ~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~~~ 676 (1462)
+|.+.. +..|+++++|++|++++|.++.+|. .++++++|++|++++| .+.. +|.. ++++++|++|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccc
Confidence 888776 4678888888888888888887765 5778888888888887 4554 3444 788888888888877653
Q ss_pred cccccCCCccchHhhhcCCCC----cEEEEEeecccCCCc
Q 046345 677 WDKVEGGSNARLDELKELSKL----TTLEIHVRDAEILPQ 712 (1462)
Q Consensus 677 ~~~~~~~~~~~~~~L~~l~~L----~~L~l~~~~~~~~~~ 712 (1462)
.. ....++.+++| ..|+++.|.+..++.
T Consensus 163 ~~--------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~ 194 (570)
T 2z63_A 163 SI--------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (570)
T ss_dssp EE--------CGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred ee--------cHHHccchhccchhhhhcccCCCCceecCH
Confidence 21 12334444444 577777666554443
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=304.28 Aligned_cols=139 Identities=20% Similarity=0.099 Sum_probs=110.5
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEecCcccCC---ccccccccCCcEEEecCCCCCcc-ch
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHWCELED---IAIVGQLKKLEILSFRDSDIKEL-PL 632 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~i~~l-p~ 632 (1462)
...+|. -.++|++|||++|.|+.+ |.+|.++.+|++|+|++|.... |..|+++++|++|+|++|.++.+ |.
T Consensus 16 L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 16 LTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 567776 357899999999999876 6789999999999999996433 67899999999999999999876 77
Q ss_pred hhccccccCEEccCCcccccc-cC-ccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeeccc
Q 046345 633 EIGLLTRLSLLDLSDCWSLEV-IA-PNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAE 708 (1462)
Q Consensus 633 ~i~~L~~L~~L~L~~~~~l~~-~p-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 708 (1462)
.++++++|++|++++| .+.. +| ...++++++|++|++++|.+... .....++++++|++|+++.|.+.
T Consensus 92 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-------~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-------YLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-------CCCGGGGTCSSCCEEEEESSCCC
T ss_pred HccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCccccc-------ccchhHhhCCCCCEEECCCCcCC
Confidence 8999999999999998 4554 33 23478999999999998876321 11246788889999988876543
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.7e-27 Score=298.18 Aligned_cols=173 Identities=23% Similarity=0.238 Sum_probs=146.4
Q ss_pred cCcEEEEccCCCCccCCc--cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCc
Q 046345 518 EDPIAISLPHRDIEVLPE--RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTS 594 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~ 594 (1462)
..++++.+.++.+..++. ...+++|++|++.+|. +..++...|.++++|++|+|++|.++.+| ..|+.+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 468999999999988764 3679999999999987 57788888999999999999999999876 68999999
Q ss_pred CcEEEecCcccCC-c-cccccccCCcEEEecCCCCCc--cchhhccccccCEEccCCcccccccCcccccccccc----c
Q 046345 595 LQTLCLHWCELED-I-AIVGQLKKLEILSFRDSDIKE--LPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRL----E 666 (1462)
Q Consensus 595 Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L----~ 666 (1462)
|++|++++|.++. + ..++++++|++|++++|.++. +|..++++++|++|++++| .+..+++..++++++| +
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCC
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhh
Confidence 9999999999988 3 369999999999999999985 7999999999999999998 6788877778999999 8
Q ss_pred eeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeec
Q 046345 667 ELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRD 706 (1462)
Q Consensus 667 ~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 706 (1462)
+|++++|.+.... ...+..+ +|+.|+++.+.
T Consensus 181 ~L~l~~n~l~~~~--------~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 181 SLDLSLNPMNFIQ--------PGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp EEECTTCCCCEEC--------TTTTTTC-EEEEEEEESCC
T ss_pred hcccCCCCceecC--------HHHhccC-cceeEeccccc
Confidence 9999888663221 2233333 68889888763
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=8.7e-27 Score=293.98 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=156.3
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchh-
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE- 633 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~- 633 (1462)
+..+|..++ ++|++|++++|.++.+ |..|.++++|++|++++|.+.. +..|+++++|++|++++|.++.+|..
T Consensus 17 l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 17 FTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred cccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 567777653 6889999999999876 5678999999999999999887 46789999999999999999888765
Q ss_pred hccccccCEEccCCcccccccC-ccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCc
Q 046345 634 IGLLTRLSLLDLSDCWSLEVIA-PNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQ 712 (1462)
Q Consensus 634 i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 712 (1462)
++++++|++|++++| .+..++ +..++++++|++|++++|..... .....+..+++|++|+++.+.+...
T Consensus 94 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~~~~~l~~L~~L~L~~n~l~~~-- 163 (549)
T 2z81_A 94 FGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSE-------IRRIDFAGLTSLNELEIKALSLRNY-- 163 (549)
T ss_dssp HTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE-------ECTTTTTTCCEEEEEEEEETTCCEE--
T ss_pred hccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccc-------cCHhhhhcccccCeeeccCCccccc--
Confidence 889999999999998 565432 23378888999998887753111 1123566777777777775543210
Q ss_pred cccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCc
Q 046345 713 DLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLN 792 (1462)
Q Consensus 713 ~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~ 792 (1462)
.. ..+..+++|+
T Consensus 164 -----------------------------------------------------------------~~---~~l~~l~~L~ 175 (549)
T 2z81_A 164 -----------------------------------------------------------------QS---QSLKSIRDIH 175 (549)
T ss_dssp -----------------------------------------------------------------CT---TTTTTCSEEE
T ss_pred -----------------------------------------------------------------Ch---hhhhccccCc
Confidence 00 1144677889
Q ss_pred EEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCH---HH
Q 046345 793 RLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSF---SM 869 (1462)
Q Consensus 793 ~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~---~~ 869 (1462)
+|++.++.. ..++.. ....+++|+.|+++++ .+.............+++|+.|.+.++. +....+. ..
T Consensus 176 ~L~l~~n~~-~~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~ 246 (549)
T 2z81_A 176 HLTLHLSES-AFLLEI------FADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKL 246 (549)
T ss_dssp EEEEECSBS-TTHHHH------HHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHGG
T ss_pred eEecccCcc-cccchh------hHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccc-cchhHHHHHHHH
Confidence 999887542 111100 1134678888888874 4444321111111356778888887763 2211000 11
Q ss_pred HHHhccCCEEEEeccc
Q 046345 870 AKNLLRLQKAEVDYCE 885 (1462)
Q Consensus 870 ~~~L~~L~~L~l~~c~ 885 (1462)
...+++|+.+++++|.
T Consensus 247 ~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 247 LRYILELSEVEFDDCT 262 (549)
T ss_dssp GGGCTTCCEEEEESCE
T ss_pred hhhhcccccccccccc
Confidence 2345677777777764
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=4.7e-25 Score=284.27 Aligned_cols=526 Identities=14% Similarity=0.126 Sum_probs=284.0
Q ss_pred CCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccC
Q 046345 528 RDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELE 606 (1462)
Q Consensus 528 ~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~ 606 (1462)
.++..+|... -+++++|++++|. +..++...|.++++|++|||++|.|+.+|+ +|.+|++|++|+|++|.++
T Consensus 41 ~~l~~vP~~l-p~~~~~LdLs~N~------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 41 LNFYKIPDNL-PFSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp SCCSSCCSSS-CTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCcCccCCCC-CcCCCEEEeeCCC------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3456666533 2478888888877 677887778888889999999888888854 6888888999999888888
Q ss_pred C--ccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccccC-ccccccccccceeeccCcccccccccC
Q 046345 607 D--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIA-PNVISKLSRLEELYMGGSFSQWDKVEG 682 (1462)
Q Consensus 607 ~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~~~~~~~~ 682 (1462)
. +..|.+|++|++|++++|+++.+|.. ++++++|++|++++| .+..++ +..++++++|++|++++|.+.....
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-- 190 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-- 190 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECG--
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccccccc--
Confidence 7 35688888899999988888888764 788888999988887 455432 3347888888888888876532211
Q ss_pred CCccchHhhhcCCC-CcEEEEEeecccCCCcc-ccccccceeEEEEccccCCcccCccccceEEEccCc-chhHHHHHHH
Q 046345 683 GSNARLDELKELSK-LTTLEIHVRDAEILPQD-LVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLE-KVSILLWMKL 759 (1462)
Q Consensus 683 ~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~ 759 (1462)
..+..+..+.. +..++++.+.+..++.. ..... ...+.+.... ...+......
T Consensus 191 ---~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~---------------------~~~l~l~~n~~~~~~~~~~~~ 246 (635)
T 4g8a_A 191 ---TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR---------------------LHKLTLRNNFDSLNVMKTCIQ 246 (635)
T ss_dssp ---GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE---------------------EEEEEEESCCSSHHHHHHHHH
T ss_pred ---ccccchhhhhhhhhhhhcccCcccccCcccccchh---------------------hhhhhhhcccccccccchhhc
Confidence 22334444432 23455555544433322 11111 1222222211 1112211111
Q ss_pred HhccccceEecc--ccCcccccc-cccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceeccccccccccc
Q 046345 760 LLKRTEDLYLSK--LKGVQNVVH-ELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETI 836 (1462)
Q Consensus 760 ~l~~L~~L~L~~--~~~~~~~~~-~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 836 (1462)
.+..++...+.. ......... ....+..+..+..+.+.......... .+
T Consensus 247 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----------------------------~~ 298 (635)
T 4g8a_A 247 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD----------------------------GI 298 (635)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE----------------------------EC
T ss_pred CCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc----------------------------ch
Confidence 122222222211 000000000 00001112222222222211000000 00
Q ss_pred ccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCccccc
Q 046345 837 CDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAI 916 (1462)
Q Consensus 837 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (1462)
......+.+++.+.+.++.. ..++. +....+|+.|++.++.. ..+. ...
T Consensus 299 ----~~~~~~~~~l~~l~~~~~~~-~~~~~---~~~~~~L~~L~l~~~~~-~~~~----------------------~~~ 347 (635)
T 4g8a_A 299 ----IDLFNCLTNVSSFSLVSVTI-ERVKD---FSYNFGWQHLELVNCKF-GQFP----------------------TLK 347 (635)
T ss_dssp ----TTTTGGGTTCSEEEEESCEE-EECGG---GGSCCCCSEEEEESCEE-SSCC----------------------CCB
T ss_pred ----hhhhhhhccccccccccccc-ccccc---cccchhhhhhhcccccc-cCcC----------------------ccc
Confidence 00002344555555554321 11111 12344566666665421 1111 023
Q ss_pred ccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEecccccceecccCCCCC
Q 046345 917 FPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNTGLGR 996 (1462)
Q Consensus 917 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 996 (1462)
++.|+.+.+.++..- ... ....+++|+.|+++++..-.....+.....+.+|+.|++..+... .++.
T Consensus 348 l~~L~~l~l~~n~~~-~~~-----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~------ 414 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGG-NAF-----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSS------ 414 (635)
T ss_dssp CTTCCEEEEESCCSC-CBC-----CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECS------
T ss_pred chhhhhcccccccCC-CCc-----ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccc------
Confidence 455666665554211 111 122466777777766543211112233456677888877765432 2222
Q ss_pred CcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCcceeeccccCCcccccccccccccc
Q 046345 997 DEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISSEDNAHTEMQTQPFFD 1076 (1462)
Q Consensus 997 ~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1076 (1462)
.+..+++|+.+++.++......+.. .+..+++++.++++++.- ...+
T Consensus 415 ------~~~~l~~L~~l~l~~~~~~~~~~~~------~~~~l~~l~~l~ls~n~l-~~~~-------------------- 461 (635)
T 4g8a_A 415 ------NFLGLEQLEHLDFQHSNLKQMSEFS------VFLSLRNLIYLDISHTHT-RVAF-------------------- 461 (635)
T ss_dssp ------CCTTCTTCCEEECTTSEEESTTSSC------TTTTCTTCCEEECTTSCC-EECC--------------------
T ss_pred ------cccccccccchhhhhcccccccccc------cccccccccccccccccc-cccc--------------------
Confidence 3556777888877765544433322 144567777777766531 1111
Q ss_pred cchhhccccCcccccccccccccccCCcEEEEecCCCcccccCcCcCCCCCccEEEEcccccceeeeccccccccCceee
Q 046345 1077 EKLSIYYAINLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIA 1156 (1462)
Q Consensus 1077 ~~l~i~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~ 1156 (1462)
+..+ ..+++|+.|+++++.......|..+..+++|+.|++++| .++.+++..-. .
T Consensus 462 ---------------~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~-------~ 516 (635)
T 4g8a_A 462 ---------------NGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFN-------S 516 (635)
T ss_dssp ---------------TTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT-------T
T ss_pred ---------------cccc--ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHc-------C
Confidence 0010 225778888887777666666666888888888888886 46666543311 2
Q ss_pred eccccccccCcCccccccccCCccccCCCcceEeeecccCcccccCCcccc-ccceeEEeeecc
Q 046345 1157 FNELKFLELDKLPRLRSFCLENYTLEFPSLERFSMKECRNMKTFSQGALFT-PKLCKVQMIENE 1219 (1462)
Q Consensus 1157 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-~~L~~L~l~~c~ 1219 (1462)
+++|+.|+++++ +++.+.. ..+.++++|+.|+++++.-....|..+..+ ++|+.|++++|+
T Consensus 517 l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 517 LSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTCCEEECTTS-CCCBCCC-GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCC-cCCCCCh-hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 577777777775 4555543 245677888888888754333334444444 578888887766
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=8.3e-25 Score=273.50 Aligned_cols=459 Identities=13% Similarity=0.091 Sum_probs=252.3
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLC 599 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~ 599 (1462)
+++.+.++.+..+|.... +++++|++.+|. +..++...|.++++|++|+|++|.++.+ |..|+++++|++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNY------ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSC------CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCc------ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 456677777777765433 677777777665 4555555567777777777777777665 55677777777777
Q ss_pred ecCcccCC-ccccccccCCcEEEecCCCCCc--cchhhccccccCEEccCCcccccccCcccccccccc--ceeeccCcc
Q 046345 600 LHWCELED-IAIVGQLKKLEILSFRDSDIKE--LPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRL--EELYMGGSF 674 (1462)
Q Consensus 600 L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L--~~L~l~~~~ 674 (1462)
|++|.++. |.. .+++|++|++++|.++. +|..++++++|++|++++| .+.. ..++.+++| ++|++++|.
T Consensus 76 Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 76 LSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred cCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeeccc
Confidence 77777666 333 66777777777776664 4566777777777777765 3333 225556666 666666654
Q ss_pred cccccccCCCccchHhhhcCCCCcEEEEEe--ecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchh
Q 046345 675 SQWDKVEGGSNARLDELKELSKLTTLEIHV--RDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVS 752 (1462)
Q Consensus 675 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~--~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 752 (1462)
... ....+..+..+.. +.+.+.. +........... ..
T Consensus 150 l~~------~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~------------------~~---------------- 188 (520)
T 2z7x_B 150 TYG------EKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSV------------------KT---------------- 188 (520)
T ss_dssp TTT------SSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCC------------------TT----------------
T ss_pred ccc------ccccccccccccc-ceEEEEeccCcchhhhhhhhh------------------hc----------------
Confidence 310 0111222333322 2333321 111110000000 01
Q ss_pred HHHHHHHHhccccceEecccc---CcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceecccc
Q 046345 753 ILLWMKLLLKRTEDLYLSKLK---GVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTN 829 (1462)
Q Consensus 753 ~~~~~~~~l~~L~~L~L~~~~---~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 829 (1462)
+++|+.|++.++. ........++.+..+++|+.|.+.++.-...... ........++|+.|++++
T Consensus 189 --------l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~----~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 189 --------VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI----RILQLVWHTTVWYFSISN 256 (520)
T ss_dssp --------CSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH----HHHHHHHTSSCSEEEEEE
T ss_pred --------ccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH----HHHHHhhhCcccEEEeec
Confidence 1223333333221 0011111122245677888888876532110000 000011235788888887
Q ss_pred ccccc-cccccccc-CCCcCCCcCEEEEecCCCCCccCCHHHHHHh---ccCCEEEEecccCccccccCCCCcccccccc
Q 046345 830 LINLE-TICDSPLT-EDHSFINLRIIKVKACEKLKHLFSFSMAKNL---LRLQKAEVDYCENLEMIVGPKNPTTTLGFKE 904 (1462)
Q Consensus 830 ~~~L~-~~~~~~~~-~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 904 (1462)
+. +. .++...+. ..+.+++|+.++++++.- .+|. ..+..+ ++|+.|+++++.. .....
T Consensus 257 n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~-~~~~~~~~~~~L~~L~l~~n~l-~~~~~------------ 319 (520)
T 2z7x_B 257 VK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ-SYIYEIFSNMNIKNFTVSGTRM-VHMLC------------ 319 (520)
T ss_dssp EE-EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT-HHHHHHHHTCCCSEEEEESSCC-CCCCC------------
T ss_pred cc-ccCccccchhhcccccCceeEeccccccce--ecch-hhhhcccccCceeEEEcCCCcc-ccccc------------
Confidence 53 33 33221110 003577888888888654 5553 233344 5699999998752 21110
Q ss_pred eeccCCCcccccccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccC-chhhhhhcccCcEEEEeccc
Q 046345 905 IIAEDDPIQKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVF-SHSMVNNLVQIQHLEIRCCE 983 (1462)
Q Consensus 905 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~-~~~~~~~l~~L~~L~i~~c~ 983 (1462)
...+++|+.|+++++ .+...... .+..+++|+.|++++|. ++.+. .+..+..+++|++|++++|.
T Consensus 320 ---------~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 320 ---------PSKISPFLHLDFSNN-LLTDTVFE---NCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp ---------CSSCCCCCEEECCSS-CCCTTTTT---TCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred ---------hhhCCcccEEEeECC-ccChhhhh---hhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc
Confidence 035788899999888 44432111 24578888899988876 33321 12456788888888888865
Q ss_pred ccceecccCCCCCCcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCcceeeccccCCc
Q 046345 984 SMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISSED 1063 (1462)
Q Consensus 984 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 1063 (1462)
....++.. .+..+++|++|+++++.--..++.. + .++|+.|++++|. ++.+|...
T Consensus 386 l~~~l~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~-------l--~~~L~~L~Ls~N~-l~~ip~~~---- 440 (520)
T 2z7x_B 386 VSYDEKKG-----------DCSWTKSLLSLNMSSNILTDTIFRC-------L--PPRIKVLDLHSNK-IKSIPKQV---- 440 (520)
T ss_dssp CBCCGGGC-----------SCCCCTTCCEEECCSSCCCGGGGGS-------C--CTTCCEEECCSSC-CCCCCGGG----
T ss_pred CCcccccc-----------hhccCccCCEEECcCCCCCcchhhh-------h--cccCCEEECCCCc-ccccchhh----
Confidence 43325431 2456778888888876432333221 1 1578888887763 33333211
Q ss_pred ccccccccccccccchhhccccCcccccccccccccccCCcEEEEecCCCcccccCcC-cCCCCCccEEEEcccc
Q 046345 1064 NAHTEMQTQPFFDEKLSIYYAINLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPL-VGIPQSLVNFKLSYCK 1137 (1462)
Q Consensus 1064 ~~~~~~~~~~~~~~~l~i~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-l~~l~~L~~L~l~~C~ 1137 (1462)
..+++|+.|++++| .++. +|.. +..+++|+.|++++++
T Consensus 441 ----------------------------------~~l~~L~~L~L~~N-~l~~-l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 441 ----------------------------------VKLEALQELNVASN-QLKS-VPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ----------------------------------GGCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred ----------------------------------hcCCCCCEEECCCC-cCCc-cCHHHhccCCcccEEECcCCC
Confidence 12577888888665 4555 3554 7777888888887765
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=272.48 Aligned_cols=462 Identities=13% Similarity=0.118 Sum_probs=251.4
Q ss_pred eEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEEecCcccCC--ccccccccCCcE
Q 046345 543 DLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEI 619 (1462)
Q Consensus 543 r~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~ 619 (1462)
++|++.++. +..+|..++ ++|++|++++|.+..+| ..|.++++|++|+|++|.++. |..|+++++|++
T Consensus 3 ~~l~ls~n~------l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKNG------LIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73 (520)
T ss_dssp CEEECTTSC------CSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred ceEecCCCC------ccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence 456666665 456666543 67777788777777765 467777777788777777776 567777777777
Q ss_pred EEecCCCCCccchhhccccccCEEccCCcccccccC-ccccccccccceeeccCcccccccccCCCccchHhhhcCCCC-
Q 046345 620 LSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIA-PNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKL- 697 (1462)
Q Consensus 620 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L- 697 (1462)
|++++|.++.+|.. .+++|++|++++| .+..++ +..++++++|++|++++|.+.. ..+..+++|
T Consensus 74 L~Ls~N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----------~~~~~l~~L~ 139 (520)
T 2z7x_B 74 LDLSHNKLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEK-----------SSVLPIAHLN 139 (520)
T ss_dssp EECCSSCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCG-----------GGGGGGTTSC
T ss_pred EecCCCceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccch-----------hhccccccce
Confidence 77777777777766 7777777777776 455432 2337777777777777765421 234444555
Q ss_pred -cEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCcc
Q 046345 698 -TTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQ 776 (1462)
Q Consensus 698 -~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 776 (1462)
+.|+++.|.+.. ..
T Consensus 140 L~~L~l~~n~l~~-----------------------------------------------------------------~~ 154 (520)
T 2z7x_B 140 ISKVLLVLGETYG-----------------------------------------------------------------EK 154 (520)
T ss_dssp EEEEEEEECTTTT-----------------------------------------------------------------SS
T ss_pred eeEEEeecccccc-----------------------------------------------------------------cc
Confidence 666666554310 00
Q ss_pred cccccccCCCCCCC-CcEEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEE
Q 046345 777 NVVHELDDGEGFPR-LNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKV 855 (1462)
Q Consensus 777 ~~~~~l~~l~~l~~-L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l 855 (1462)
..... +..+.. ...+.+.++.....++. .....+++|+.|++.++.....+
T Consensus 155 ~~~~~---l~~l~~~~l~l~l~~n~~~~~~~~------~~~~~l~~L~~L~l~~n~~~~~~------------------- 206 (520)
T 2z7x_B 155 EDPEG---LQDFNTESLHIVFPTNKEFHFILD------VSVKTVANLELSNIKCVLEDNKC------------------- 206 (520)
T ss_dssp CCTTT---TTTCCEEEEEEECCSSSCCCCCCC------CCCTTCSEEEECCEEECCSTTTT-------------------
T ss_pred ccccc---ccccccceEEEEeccCcchhhhhh------hhhhcccceeecccccccccccc-------------------
Confidence 00000 111111 11233333322111110 01233555555555553200000
Q ss_pred ecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeecccccccc-cc
Q 046345 856 KACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLANID-KL 934 (1462)
Q Consensus 856 ~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~~ 934 (1462)
..+... ...+..+++|+.|+++++.--...... . ......++|+.|++++| .+. .+
T Consensus 207 ---~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~~~-~----------------~~~~~~~~L~~L~l~~n-~l~~~~ 263 (520)
T 2z7x_B 207 ---SYFLSI--LAKLQTNPKLSNLTLNNIETTWNSFIR-I----------------LQLVWHTTVWYFSISNV-KLQGQL 263 (520)
T ss_dssp ---HHHHHH--HHGGGGCTTCCEEEEEEEEEEHHHHHH-H----------------HHHHHTSSCSEEEEEEE-EEESCC
T ss_pred ---ceeecc--hhhhccccchhhccccccccCHHHHHH-H----------------HHHhhhCcccEEEeecc-cccCcc
Confidence 000000 001233444444444443210000000 0 00011235555555555 222 23
Q ss_pred cccCCC-cccCCCCceEEEEecCCCcCccCchhhhhhc---ccCcEEEEecccccceecccCCCCCCccccccccccccc
Q 046345 935 WPDQLQ-GLSYCQNLTKLTVWKCDHLKYVFSHSMVNNL---VQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKL 1010 (1462)
Q Consensus 935 ~~~~~~-~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l---~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L 1010 (1462)
+...+. ....+++|+.+++.++.. .+ +...+..+ ++|+.|++++|.. ...+ ....+++|
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~--~~-p~~~~~~~~~~~~L~~L~l~~n~l-~~~~-------------~~~~l~~L 326 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVF--GF-PQSYIYEIFSNMNIKNFTVSGTRM-VHML-------------CPSKISPF 326 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCC--CS-CTHHHHHHHHTCCCSEEEEESSCC-CCCC-------------CCSSCCCC
T ss_pred ccchhhcccccCceeEeccccccce--ec-chhhhhcccccCceeEEEcCCCcc-cccc-------------chhhCCcc
Confidence 322110 014677888888887764 33 32334444 5689999988753 2221 12467888
Q ss_pred ceeeecCCccccc-cccCCcccccccccCCCccEEEEeccCCcceeeccccCCcccccccccccccccchhhccccCccc
Q 046345 1011 YALQLTGLTQLTS-FANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISSEDNAHTEMQTQPFFDEKLSIYYAINLTK 1089 (1462)
Q Consensus 1011 ~~L~L~~c~~L~~-l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~ 1089 (1462)
++|+++++. ++. ++. .+..+++|++|++++|. ++.++.
T Consensus 327 ~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~L~~N~-l~~l~~-------------------------------- 365 (520)
T 2z7x_B 327 LHLDFSNNL-LTDTVFE-------NCGHLTELETLILQMNQ-LKELSK-------------------------------- 365 (520)
T ss_dssp CEEECCSSC-CCTTTTT-------TCCCCSSCCEEECCSSC-CCBHHH--------------------------------
T ss_pred cEEEeECCc-cChhhhh-------hhccCCCCCEEEccCCc-cCcccc--------------------------------
Confidence 888888864 333 222 25568888888888874 221110
Q ss_pred ccccccccccccCCcEEEEecCCCcccccCcC-cCCCCCccEEEEcccccceeeeccccccccCceeeeccccccccCcC
Q 046345 1090 ILHHLLASESFSKLKNLVIFRCNNLMNIFPPL-VGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIAFNELKFLELDKL 1168 (1462)
Q Consensus 1090 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 1168 (1462)
.+.. ...+++|+.|++++|. ++..+|.. +..+++|+.|++++|.--..++... .++|+.|+++++
T Consensus 366 -~~~~--~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----------~~~L~~L~Ls~N 431 (520)
T 2z7x_B 366 -IAEM--TTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL----------PPRIKVLDLHSN 431 (520)
T ss_dssp -HHHH--HTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC----------CTTCCEEECCSS
T ss_pred -chHH--HhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhh----------cccCCEEECCCC
Confidence 0000 0236788889987654 44423444 7788899999998875323222211 267888888876
Q ss_pred ccccccccCCccccCCCcceEeeecccCcccccCC-ccccccceeEEeeecc
Q 046345 1169 PRLRSFCLENYTLEFPSLERFSMKECRNMKTFSQG-ALFTPKLCKVQMIENE 1219 (1462)
Q Consensus 1169 ~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~ 1219 (1462)
+++.++. ....+++|+.|++++| .++.+|.. +..+++|+.|++++|+
T Consensus 432 -~l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 432 -KIKSIPK--QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -CCCCCCG--GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cccccch--hhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 4665544 3447888888888886 56677765 4456778888888776
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=2.8e-25 Score=282.49 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=79.6
Q ss_pred CcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCC-------------CCCcccCCCCcCcEEEec-----
Q 046345 540 PRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFS-------------SLPSSLGRLTSLQTLCLH----- 601 (1462)
Q Consensus 540 ~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-------------~lp~~i~~L~~Lr~L~L~----- 601 (1462)
.+++.|++.++.. ...+|.. |.++++|++|+|++|.+. .+|... +.+|| ++++
T Consensus 81 ~~V~~L~L~~~~l-----~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~ 151 (636)
T 4eco_A 81 GRVTGLSLEGFGA-----SGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVD 151 (636)
T ss_dssp CCEEEEECTTSCC-----EEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTC
T ss_pred CCEEEEEecCccc-----CCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhc
Confidence 5788898888774 4456654 789999999999998652 222211 22222 2222
Q ss_pred ----------------------------------------CcccCC-ccccccccCCcEEEecCCCCCc-----------
Q 046345 602 ----------------------------------------WCELED-IAIVGQLKKLEILSFRDSDIKE----------- 629 (1462)
Q Consensus 602 ----------------------------------------~~~l~~-~~~i~~L~~L~~L~L~~~~i~~----------- 629 (1462)
+|.++. |..++++++|++|++++|.++.
T Consensus 152 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 231 (636)
T 4eco_A 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231 (636)
T ss_dssp CCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred cCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccc
Confidence 234444 5667777777777777777766
Q ss_pred -------cchhhc--cccccCEEccCCcccccccCccccccccccceeeccCcc
Q 046345 630 -------LPLEIG--LLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 630 -------lp~~i~--~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
+|..++ ++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 232 ~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNR 284 (636)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCT
T ss_pred cchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCC
Confidence 777766 7777777777776444445544 6777777777776664
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5.3e-25 Score=279.97 Aligned_cols=359 Identities=13% Similarity=0.125 Sum_probs=209.3
Q ss_pred ccChhhhhcCCcceEEEecCCCCCC------------------CCcccC--CCCcCcEEEecCcccCC--ccccccccCC
Q 046345 560 QMSDLFFEGTEGLKVLDFTGIHFSS------------------LPSSLG--RLTSLQTLCLHWCELED--IAIVGQLKKL 617 (1462)
Q Consensus 560 ~l~~~~f~~l~~Lr~L~Ls~~~i~~------------------lp~~i~--~L~~Lr~L~L~~~~l~~--~~~i~~L~~L 617 (1462)
.+|.. |.++++|++|+|++|.++. +|++++ ++++|++|+|++|.+.. |..++++++|
T Consensus 197 ~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 35554 6788888888888888877 888887 88888888888887665 7778888888
Q ss_pred cEEEecCCC-CCc--cchhhccc------cccCEEccCCcccccccCc-cccccccccceeeccCcccccccccCCCccc
Q 046345 618 EILSFRDSD-IKE--LPLEIGLL------TRLSLLDLSDCWSLEVIAP-NVISKLSRLEELYMGGSFSQWDKVEGGSNAR 687 (1462)
Q Consensus 618 ~~L~L~~~~-i~~--lp~~i~~L------~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 687 (1462)
++|++++|+ ++. +|..++++ ++|++|++++| .+..+|. +.++++++|++|++++|.+. +..
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~--------g~i 346 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLE--------GKL 346 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCE--------EEC
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCc--------cch
Confidence 888888887 773 78877776 88888888887 5667776 13788888888888777652 112
Q ss_pred hHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccce
Q 046345 688 LDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDL 767 (1462)
Q Consensus 688 ~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 767 (1462)
+ .++.+++|+.|+++.|.+..+|..
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~~lp~~------------------------------------------------------ 371 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQITEIPAN------------------------------------------------------ 371 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEEECCTT------------------------------------------------------
T ss_pred h-hhCCCCCCCEEECCCCccccccHh------------------------------------------------------
Confidence 2 556666677777665544333221
Q ss_pred EeccccCcccccccccCCCCCCC-CcEEEEeecccceeeecCcCCCccccccccccceeccccccccccccccccc----
Q 046345 768 YLSKLKGVQNVVHELDDGEGFPR-LNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLT---- 842 (1462)
Q Consensus 768 ~L~~~~~~~~~~~~l~~l~~l~~-L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~---- 842 (1462)
+..+++ |++|+++++. +..++.. +....+++|+.|+++++ .+.......+.
T Consensus 372 -----------------l~~l~~~L~~L~Ls~N~-l~~lp~~-----~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 372 -----------------FCGFTEQVENLSFAHNK-LKYIPNI-----FDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDP 427 (636)
T ss_dssp -----------------SEEECTTCCEEECCSSC-CSSCCSC-----CCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCS
T ss_pred -----------------hhhhcccCcEEEccCCc-Ccccchh-----hhhcccCccCEEECcCC-cCCCcchhhhccccc
Confidence 122333 4444444432 1122110 01112234555555542 22221111111
Q ss_pred CCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccce
Q 046345 843 EDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEE 922 (1462)
Q Consensus 843 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 922 (1462)
..-.+++|+.|++++| .+..+|. .....+++|++|+++++. +..++....... ......+++|+.
T Consensus 428 ~~~~~~~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~------------~~~~~~l~~L~~ 492 (636)
T 4eco_A 428 TPFKGINVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNM-LTEIPKNSLKDE------------NENFKNTYLLTS 492 (636)
T ss_dssp SCCCCCCEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSC-CSBCCSSSSEET------------TEECTTGGGCCE
T ss_pred ccccCCCCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCC-CCCcCHHHhccc------------cccccccCCccE
Confidence 0014568888888886 5666665 355678899999998864 434432211000 000112347778
Q ss_pred eecccccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEeccc------ccceecccCCCCC
Q 046345 923 LELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCE------SMERIVDNTGLGR 996 (1462)
Q Consensus 923 L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~------~l~~~~~~~~~~~ 996 (1462)
|++++| .++.++.... ...+++|+.|++++|. ++.+ +..+.++++|+.|++++|. ....+|.
T Consensus 493 L~Ls~N-~l~~lp~~~~--~~~l~~L~~L~Ls~N~-l~~i--p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~------ 560 (636)
T 4eco_A 493 IDLRFN-KLTKLSDDFR--ATTLPYLVGIDLSYNS-FSKF--PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE------ 560 (636)
T ss_dssp EECCSS-CCCBCCGGGS--TTTCTTCCEEECCSSC-CSSC--CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT------
T ss_pred EECcCC-cCCccChhhh--hccCCCcCEEECCCCC-CCCc--ChhhhcCCCCCEEECCCCcccccCcccccChH------
Confidence 888777 4555543211 0266777777777765 3433 3345567777777775432 2333332
Q ss_pred CcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEeccC
Q 046345 997 DEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCH 1050 (1462)
Q Consensus 997 ~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 1050 (1462)
.+..+++|++|+|+++. ++++|.. + +++|+.|++++|+
T Consensus 561 ------~l~~l~~L~~L~Ls~N~-l~~ip~~-------~--~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 561 ------GITLCPSLTQLQIGSND-IRKVNEK-------I--TPNISVLDIKDNP 598 (636)
T ss_dssp ------TGGGCSSCCEEECCSSC-CCBCCSC-------C--CTTCCEEECCSCT
T ss_pred ------HHhcCCCCCEEECCCCc-CCccCHh-------H--hCcCCEEECcCCC
Confidence 35566666666666643 3555432 1 2566666666654
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2.5e-24 Score=277.45 Aligned_cols=143 Identities=22% Similarity=0.229 Sum_probs=122.6
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchh-
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE- 633 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~- 633 (1462)
+..+|.++ -..+++|||++|.|+.+| .+|.++++||+|+|++|.|+. +..|.+|++|++|+|++|+++.+|.+
T Consensus 43 l~~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 43 FYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CSSCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 56777653 247999999999999997 479999999999999999998 46799999999999999999999865
Q ss_pred hccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCC
Q 046345 634 IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILP 711 (1462)
Q Consensus 634 i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 711 (1462)
+.+|++|++|++++| .+..+|+..|+++++|++|++++|.+.. ...+..++.+++|++|+++.|.+..++
T Consensus 120 f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 120 FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS-------FKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp GTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC-------CCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred hcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCcccc-------CCCchhhccchhhhhhcccCccccccc
Confidence 789999999999998 7889988879999999999999987632 123466788999999999988776544
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.3e-24 Score=277.08 Aligned_cols=357 Identities=15% Similarity=0.123 Sum_probs=218.3
Q ss_pred cChhhhhcCCcceEEEecCCCCCC------------------CCcccC--CCCcCcEEEecCcccCC--ccccccccCCc
Q 046345 561 MSDLFFEGTEGLKVLDFTGIHFSS------------------LPSSLG--RLTSLQTLCLHWCELED--IAIVGQLKKLE 618 (1462)
Q Consensus 561 l~~~~f~~l~~Lr~L~Ls~~~i~~------------------lp~~i~--~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~ 618 (1462)
+|.. |.++++|++|+|++|.++. +|+.++ ++++|++|+|++|.+.. |..++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 5554 6788888888888888876 788777 88888888888887655 77788888888
Q ss_pred EEEecCCC-CCc--cchhhcccc-------ccCEEccCCcccccccCc-cccccccccceeeccCcccccccccCCCccc
Q 046345 619 ILSFRDSD-IKE--LPLEIGLLT-------RLSLLDLSDCWSLEVIAP-NVISKLSRLEELYMGGSFSQWDKVEGGSNAR 687 (1462)
Q Consensus 619 ~L~L~~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 687 (1462)
+|++++|+ ++. +|..+++++ +|++|++++| .+..+|. ..++++++|++|++++|.+. ..
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~---------~l 588 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR---------HL 588 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC---------BC
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc---------cc
Confidence 88888887 774 787777766 8888888887 5667776 23788888888888777652 11
Q ss_pred hHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccce
Q 046345 688 LDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDL 767 (1462)
Q Consensus 688 ~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 767 (1462)
+ .++.+++|+.|+++.|.+..+|..
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~lp~~------------------------------------------------------ 613 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEEIPED------------------------------------------------------ 613 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSCCCTT------------------------------------------------------
T ss_pred h-hhcCCCcceEEECcCCccccchHH------------------------------------------------------
Confidence 2 566677777777776665543321
Q ss_pred EeccccCcccccccccCCCCCCC-CcEEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCC-
Q 046345 768 YLSKLKGVQNVVHELDDGEGFPR-LNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDH- 845 (1462)
Q Consensus 768 ~L~~~~~~~~~~~~l~~l~~l~~-L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~- 845 (1462)
+..+++ |++|+++++. +..++.. +.....++|+.|+++++ .+...........+
T Consensus 614 -----------------l~~l~~~L~~L~Ls~N~-L~~lp~~-----~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 614 -----------------FCAFTDQVEGLGFSHNK-LKYIPNI-----FNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDD 669 (876)
T ss_dssp -----------------SCEECTTCCEEECCSSC-CCSCCSC-----CCTTCSSCEEEEECCSS-CTTTTSSSCSSCTTT
T ss_pred -----------------HhhccccCCEEECcCCC-CCcCchh-----hhccccCCCCEEECcCC-cCCCccccchhhhcc
Confidence 112233 3333333322 1111100 00111122444444442 11110000000001
Q ss_pred -cCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceee
Q 046345 846 -SFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELE 924 (1462)
Q Consensus 846 -~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 924 (1462)
..++|+.|++++| .+..+|. .....+++|+.|+++++ .+..++....... ......+++|+.|+
T Consensus 670 ~~~~~L~~L~Ls~N-~L~~lp~-~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~------------~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 670 YKGINASTVTLSYN-EIQKFPT-ELFATGSPISTIILSNN-LMTSIPENSLKPK------------DGNYKNTYLLTTID 734 (876)
T ss_dssp CCCCCEEEEECCSS-CCCSCCH-HHHHTTCCCSEEECCSC-CCSCCCTTSSSCT------------TSCCTTGGGCCEEE
T ss_pred ccCCCcCEEEccCC-cCCccCH-HHHccCCCCCEEECCCC-cCCccChHHhccc------------cccccccCCccEEE
Confidence 3457888888886 4556654 35567899999999886 3444432211000 00012345888899
Q ss_pred cccccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEeccc------ccceecccCCCCCCc
Q 046345 925 LKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCE------SMERIVDNTGLGRDE 998 (1462)
Q Consensus 925 L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~------~l~~~~~~~~~~~~~ 998 (1462)
|++| .+..++.... ...+++|+.|++++|. ++.+ +..+.++++|+.|++++|+ ....+|.
T Consensus 735 Ls~N-~L~~lp~~l~--~~~l~~L~~L~Ls~N~-L~~l--p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-------- 800 (876)
T 4ecn_A 735 LRFN-KLTSLSDDFR--ATTLPYLSNMDVSYNC-FSSF--PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-------- 800 (876)
T ss_dssp CCSS-CCCCCCGGGS--TTTCTTCCEEECCSSC-CSSC--CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--------
T ss_pred CCCC-CCccchHHhh--hccCCCcCEEEeCCCC-CCcc--chhhhcCCCCCEEECCCCCCcccccccccChH--------
Confidence 9888 6665554311 1267888899988875 4444 3346688888988887633 2333433
Q ss_pred ccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEeccC
Q 046345 999 GKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCH 1050 (1462)
Q Consensus 999 ~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 1050 (1462)
.+..+++|+.|+|++|. +..+|..- +++|+.|+|++|+
T Consensus 801 ----~l~~L~~L~~L~Ls~N~-L~~Ip~~l---------~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 801 ----GITTCPSLIQLQIGSND-IRKVDEKL---------TPQLYILDIADNP 838 (876)
T ss_dssp ----TGGGCSSCCEEECCSSC-CCBCCSCC---------CSSSCEEECCSCT
T ss_pred ----HHhcCCCCCEEECCCCC-CCccCHhh---------cCCCCEEECCCCC
Confidence 46678888888888864 46666431 3688888888876
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=9.1e-25 Score=280.77 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=48.7
Q ss_pred cccCC-ccccccccCCcEEEecCCCCCc------------------cchhhc--cccccCEEccCCcccccccCcccccc
Q 046345 603 CELED-IAIVGQLKKLEILSFRDSDIKE------------------LPLEIG--LLTRLSLLDLSDCWSLEVIAPNVISK 661 (1462)
Q Consensus 603 ~~l~~-~~~i~~L~~L~~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~~p~~~l~~ 661 (1462)
|.+.. |..+++|++|++|+|++|.++. +|..++ ++++|++|++++|.....+|.. +++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhC
Confidence 44544 6667777777777777777776 777766 7777777777776445555544 677
Q ss_pred ccccceeeccCcc
Q 046345 662 LSRLEELYMGGSF 674 (1462)
Q Consensus 662 L~~L~~L~l~~~~ 674 (1462)
+++|++|++++|.
T Consensus 514 L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 514 LPELQSLNIACNR 526 (876)
T ss_dssp CSSCCEEECTTCT
T ss_pred CCCCCEEECcCCC
Confidence 7777777777664
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=3e-23 Score=261.38 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=50.0
Q ss_pred cccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccCc-hhhhhhcccCcEEEEecccccceecccCCC
Q 046345 916 IFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFS-HSMVNNLVQIQHLEIRCCESMERIVDNTGL 994 (1462)
Q Consensus 916 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 994 (1462)
.+++|+.|+++++ .+..... ..+..+++|+.|++++|. ++.+.. +..+.++++|++|++++|.....++..
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~---~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--- 422 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVF---QGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR--- 422 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTT---TTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC---
T ss_pred CCCCceEEECCCC-ccccchh---hhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChh---
Confidence 4677777777777 3333211 123467777777777763 443321 233566777777777775432224321
Q ss_pred CCCcccccccccccccceeeecCCc
Q 046345 995 GRDEGKLIELKVFPKLYALQLTGLT 1019 (1462)
Q Consensus 995 ~~~~~~~~~~~~l~~L~~L~L~~c~ 1019 (1462)
.+..+++|+.|+++++.
T Consensus 423 --------~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 423 --------TCAWAESILVLNLSSNM 439 (562)
T ss_dssp --------CCCCCTTCCEEECCSSC
T ss_pred --------hhcCcccCCEEECCCCC
Confidence 24456677777776653
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.8e-22 Score=254.23 Aligned_cols=463 Identities=14% Similarity=0.095 Sum_probs=266.7
Q ss_pred CCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEEecCcccCC--ccccccc
Q 046345 538 QCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLHWCELED--IAIVGQL 614 (1462)
Q Consensus 538 ~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L 614 (1462)
.+...+++++.++. +..+|..++ ++|++|++++|.+..+| .+|.++++|++|+|++|.++. |..|+++
T Consensus 29 ~~~~~~~l~ls~~~------L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 29 SNELESMVDYSNRN------LTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp ----CCEEECTTSC------CCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred ccCCCcEEEcCCCC------CccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 34455888888776 566777653 78899999999998886 578999999999999998887 5778899
Q ss_pred cCCcEEEecCCCCCccchhhccccccCEEccCCcccccccC-ccccccccccceeeccCcccccccccCCCccchHhhhc
Q 046345 615 KKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIA-PNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKE 693 (1462)
Q Consensus 615 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 693 (1462)
++|++|++++|.++.+|.. .+++|++|++++| .+..++ +..++++++|++|++++|.+.. ..+..+..
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--------~~~~~l~~ 168 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--------LDLLPVAH 168 (562)
T ss_dssp TTCCEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT--------TTTGGGTT
T ss_pred CCCCEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc--------Cchhhhhh
Confidence 9999999999999888877 8899999999987 576665 2458888999999988876521 12233333
Q ss_pred CCCCcEEEEEeecc--cCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEecc
Q 046345 694 LSKLTTLEIHVRDA--EILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSK 771 (1462)
Q Consensus 694 l~~L~~L~l~~~~~--~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 771 (1462)
+ +|+.|+++.|.+ .....
T Consensus 169 L-~L~~L~L~~n~l~~~~~~~----------------------------------------------------------- 188 (562)
T 3a79_B 169 L-HLSCILLDLVSYHIKGGET----------------------------------------------------------- 188 (562)
T ss_dssp S-CEEEEEEEESSCCCCSSSC-----------------------------------------------------------
T ss_pred c-eeeEEEeecccccccccCc-----------------------------------------------------------
Confidence 3 347777776644 11100
Q ss_pred ccCcccccccccCCCCCCCCcEE--EEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCC
Q 046345 772 LKGVQNVVHELDDGEGFPRLNRL--QVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFIN 849 (1462)
Q Consensus 772 ~~~~~~~~~~l~~l~~l~~L~~L--~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~ 849 (1462)
..+ ..++ .+.+ .+.++.....++. ... ..+++
T Consensus 189 --------~~l---~~l~-~~~l~l~l~~n~~~~~~~~------~~~----------------------------~~l~~ 222 (562)
T 3a79_B 189 --------ESL---QIPN-TTVLHLVFHPNSLFSVQVN------MSV----------------------------NALGH 222 (562)
T ss_dssp --------CEE---EECC-EEEEEEEECSSSCCCCCCE------EEE----------------------------SSEEE
T ss_pred --------ccc---cccC-cceEEEEecCccchhhhhh------hcc----------------------------cccce
Confidence 000 0111 0222 3332221100000 011 23445
Q ss_pred cCEEEEecCCC-CCccC-CHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeeccc
Q 046345 850 LRIIKVKACEK-LKHLF-SFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKR 927 (1462)
Q Consensus 850 L~~L~l~~c~~-L~~l~-~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 927 (1462)
|+.|+++++.. ...++ ....+..++.|+.|++.++.--...... . ......++|++|++++
T Consensus 223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~-~----------------~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK-L----------------FQFFWPRPVEYLNIYN 285 (562)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH-H----------------HHHHTTSSEEEEEEEE
T ss_pred EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHH-H----------------HHhhhcccccEEEEec
Confidence 55555554320 00000 0113345566666666554210000000 0 0001234777777777
Q ss_pred ccccccccccCCCc-ccCCCCceEEEEecCCCcCccCchhhhhhc---ccCcEEEEecccccceecccCCCCCCcccccc
Q 046345 928 LANIDKLWPDQLQG-LSYCQNLTKLTVWKCDHLKYVFSHSMVNNL---VQIQHLEIRCCESMERIVDNTGLGRDEGKLIE 1003 (1462)
Q Consensus 928 ~~~l~~~~~~~~~~-~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l---~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 1003 (1462)
|.--..++...+.. ...+++|+.+++..+.. . ++...+..+ .+|++|++++|.. .... .
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~-~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~-------------~ 348 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVF--L-FSKEALYSVFAEMNIKMLSISDTPF-IHMV-------------C 348 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S-SCHHHHHHHHHTCCCSEEEEESSCC-CCCC-------------C
T ss_pred cEeeccccchhhhcccccchheehhhccccee--e-cChhhhhhhhccCcceEEEccCCCc-cccc-------------C
Confidence 73222343332110 12444455555544432 2 233333333 5689999988753 2221 1
Q ss_pred cccccccceeeecCCccccc-cccCCcccccccccCCCccEEEEeccCCcceeeccccCCcccccccccccccccchhhc
Q 046345 1004 LKVFPKLYALQLTGLTQLTS-FANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISSEDNAHTEMQTQPFFDEKLSIY 1082 (1462)
Q Consensus 1004 ~~~l~~L~~L~L~~c~~L~~-l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~i~ 1082 (1462)
...+++|++|+++++. ++. .+. .+..+++|+.|+++++. ++.++..
T Consensus 349 ~~~l~~L~~L~l~~n~-l~~~~~~-------~~~~l~~L~~L~L~~N~-l~~~~~~------------------------ 395 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNV-FTDSVFQ-------GCSTLKRLQTLILQRNG-LKNFFKV------------------------ 395 (562)
T ss_dssp CSSCCCCCEEECCSSC-CCTTTTT-------TCCSCSSCCEEECCSSC-CCBTTHH------------------------
T ss_pred ccCCCCceEEECCCCc-cccchhh-------hhcccCCCCEEECCCCC-cCCcccc------------------------
Confidence 1467888889888853 333 222 25568888898888863 3322110
Q ss_pred cccCcccccccccccccccCCcEEEEecCCCcccccCcC-cCCCCCccEEEEcccccceeeeccccccccCceeeecccc
Q 046345 1083 YAINLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPL-VGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIAFNELK 1161 (1462)
Q Consensus 1083 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~ 1161 (1462)
+.. ...+++|+.|++++|. ++..+|.. +..+++|+.|++++|.--..++... .++|+
T Consensus 396 ---------~~~--~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----------~~~L~ 453 (562)
T 3a79_B 396 ---------ALM--TKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL----------PPKVK 453 (562)
T ss_dssp ---------HHT--TTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC----------CTTCS
T ss_pred ---------hhh--hcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhh----------cCcCC
Confidence 000 1236788999997654 44423444 7888899999998875322222111 15788
Q ss_pred ccccCcCccccccccCCccccCCCcceEeeecccCcccccCC-ccccccceeEEeeecc
Q 046345 1162 FLELDKLPRLRSFCLENYTLEFPSLERFSMKECRNMKTFSQG-ALFTPKLCKVQMIENE 1219 (1462)
Q Consensus 1162 ~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~ 1219 (1462)
.|+++++ +++.++. ....+++|+.|+++++ .++.+|.. +..+++|+.|++++|+
T Consensus 454 ~L~L~~N-~l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 454 VLDLHNN-RIMSIPK--DVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EEECCSS-CCCCCCT--TTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred EEECCCC-cCcccCh--hhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 8888876 5666654 3347888888888884 56677766 5556788888888877
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1e-22 Score=249.73 Aligned_cols=323 Identities=20% Similarity=0.287 Sum_probs=168.4
Q ss_pred hhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEcc
Q 046345 566 FEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDL 645 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 645 (1462)
+..+++|++|++++|.++.+|. +.++++|++|++++|.+.....++++++|++|++++|.++.+|. +.++++|++|++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLEL 141 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEEC
Confidence 4556666666666666666654 66666666666666666653236666666666666666666654 566666666666
Q ss_pred CCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEE
Q 046345 646 SDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRIC 725 (1462)
Q Consensus 646 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~ 725 (1462)
++| .+..++. ++++++|++|+++++.. ....++.+++|+.|+++.+.+..++....
T Consensus 142 ~~n-~l~~~~~--~~~l~~L~~L~l~~~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~l~~---------- 197 (466)
T 1o6v_A 142 SSN-TISDISA--LSGLTSLQQLSFGNQVT-----------DLKPLANLTTLERLDISSNKVSDISVLAK---------- 197 (466)
T ss_dssp EEE-EECCCGG--GTTCTTCSEEEEEESCC-----------CCGGGTTCTTCCEEECCSSCCCCCGGGGG----------
T ss_pred CCC-ccCCChh--hccCCcccEeecCCccc-----------CchhhccCCCCCEEECcCCcCCCChhhcc----------
Confidence 665 3444432 56666666666542211 11225555666666655443322111000
Q ss_pred EccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceee
Q 046345 726 IGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQI 805 (1462)
Q Consensus 726 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i 805 (1462)
+++|+.|++.++... .. ..++.+++|++|+++++.
T Consensus 198 -----------------------------------l~~L~~L~l~~n~l~-~~----~~~~~l~~L~~L~l~~n~----- 232 (466)
T 1o6v_A 198 -----------------------------------LTNLESLIATNNQIS-DI----TPLGILTNLDELSLNGNQ----- 232 (466)
T ss_dssp -----------------------------------CTTCSEEECCSSCCC-CC----GGGGGCTTCCEEECCSSC-----
T ss_pred -----------------------------------CCCCCEEEecCCccc-cc----ccccccCCCCEEECCCCC-----
Confidence 122223333222110 00 002345556666665542
Q ss_pred ecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEeccc
Q 046345 806 VGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCE 885 (1462)
Q Consensus 806 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~ 885 (1462)
++.+. .+ ..+++|+.|++++| .+..+++ +..+++|++|++++|.
T Consensus 233 ---------------------------l~~~~--~l---~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 233 ---------------------------LKDIG--TL---ASLTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGANQ 276 (466)
T ss_dssp ---------------------------CCCCG--GG---GGCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC
T ss_pred ---------------------------cccch--hh---hcCCCCCEEECCCC-ccccchh---hhcCCCCCEEECCCCc
Confidence 11111 00 23455555555554 2333322 3455666666666542
Q ss_pred CccccccCCCCcccccccceeccCCCcccccccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccCch
Q 046345 886 NLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSH 965 (1462)
Q Consensus 886 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~ 965 (1462)
+..+.. ...+++|+.|++++| .+..++. +..+++|+.|++++|. ++.+.+
T Consensus 277 -l~~~~~---------------------~~~l~~L~~L~L~~n-~l~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~- 326 (466)
T 1o6v_A 277 -ISNISP---------------------LAGLTALTNLELNEN-QLEDISP-----ISNLKNLTYLTLYFNN-ISDISP- 326 (466)
T ss_dssp -CCCCGG---------------------GTTCTTCSEEECCSS-CCSCCGG-----GGGCTTCSEEECCSSC-CSCCGG-
T ss_pred -cCcccc---------------------ccCCCccCeEEcCCC-cccCchh-----hcCCCCCCEEECcCCc-CCCchh-
Confidence 221111 134566666666666 3333322 3466777777777774 444322
Q ss_pred hhhhhcccCcEEEEecccccceecccCCCCCCcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEE
Q 046345 966 SMVNNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLE 1045 (1462)
Q Consensus 966 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~ 1045 (1462)
+..+++|+.|++++| .+..++ .+..+++|+.|++++|. ++.+.. +..+++|+.|+
T Consensus 327 --~~~l~~L~~L~l~~n-~l~~~~-------------~l~~l~~L~~L~l~~n~-l~~~~~--------~~~l~~L~~L~ 381 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNN-KVSDVS-------------SLANLTNINWLSAGHNQ-ISDLTP--------LANLTRITQLG 381 (466)
T ss_dssp --GGGCTTCCEEECCSS-CCCCCG-------------GGTTCTTCCEEECCSSC-CCBCGG--------GTTCTTCCEEE
T ss_pred --hccCccCCEeECCCC-ccCCch-------------hhccCCCCCEEeCCCCc-cCccch--------hhcCCCCCEEe
Confidence 567778888888776 344332 35567788888887764 333321 34578888888
Q ss_pred EeccC
Q 046345 1046 IIDCH 1050 (1462)
Q Consensus 1046 l~~c~ 1050 (1462)
+++|+
T Consensus 382 l~~n~ 386 (466)
T 1o6v_A 382 LNDQA 386 (466)
T ss_dssp CCCEE
T ss_pred ccCCc
Confidence 88764
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.5e-22 Score=246.39 Aligned_cols=273 Identities=16% Similarity=0.216 Sum_probs=197.0
Q ss_pred CcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEE
Q 046345 519 DPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTL 598 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L 598 (1462)
.++++.+.++.+..+|....+++|++|++.+|. +..++. |.++++|++|++++|.+..++. ++++++|++|
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~------l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ------LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSC------CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCc------cCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 589999999999999987889999999999987 456665 7999999999999999999887 9999999999
Q ss_pred EecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccc
Q 046345 599 CLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWD 678 (1462)
Q Consensus 599 ~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 678 (1462)
++++|.+.....+.++++|++|++++|.+..+| .++++++|++|++++ .+..+++ ++++++|++|++++|...
T Consensus 118 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~-- 190 (466)
T 1o6v_A 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS-- 190 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred ECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC--
Confidence 999999998556999999999999999999887 489999999999974 4555554 899999999999998752
Q ss_pred cccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHH
Q 046345 679 KVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMK 758 (1462)
Q Consensus 679 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 758 (1462)
.+..+..+++|+.|+++.+.+...+....
T Consensus 191 --------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~------------------------------------------- 219 (466)
T 1o6v_A 191 --------DISVLAKLTNLESLIATNNQISDITPLGI------------------------------------------- 219 (466)
T ss_dssp --------CCGGGGGCTTCSEEECCSSCCCCCGGGGG-------------------------------------------
T ss_pred --------CChhhccCCCCCEEEecCCcccccccccc-------------------------------------------
Confidence 22458889999999999877654432111
Q ss_pred HHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceeccccccccccccc
Q 046345 759 LLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICD 838 (1462)
Q Consensus 759 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 838 (1462)
+++|+.|++.++. +..+ +.+..+++|++|+++++.- ..+. ....+++|+.|+++++ .+..+..
T Consensus 220 --l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~l-~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~ 282 (466)
T 1o6v_A 220 --LTNLDELSLNGNQ-LKDI----GTLASLTNLTDLDLANNQI-SNLA--------PLSGLTKLTELKLGAN-QISNISP 282 (466)
T ss_dssp --CTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSCC-CCCG--------GGTTCTTCSEEECCSS-CCCCCGG
T ss_pred --cCCCCEEECCCCC-cccc----hhhhcCCCCCEEECCCCcc-ccch--------hhhcCCCCCEEECCCC-ccCcccc
Confidence 2445556655442 1111 2245788999999987642 1111 1234566666666663 3333221
Q ss_pred ccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecc
Q 046345 839 SPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYC 884 (1462)
Q Consensus 839 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c 884 (1462)
+ ..+++|+.|++++| .+..+++ +..+++|++|++++|
T Consensus 283 --~---~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 283 --L---AGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN 319 (466)
T ss_dssp --G---TTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS
T ss_pred --c---cCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCC
Confidence 1 34556666666554 3333332 234555555555554
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=1.6e-22 Score=245.12 Aligned_cols=146 Identities=18% Similarity=0.119 Sum_probs=68.9
Q ss_pred CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCC-CCCcccCCCCcC-------------cEEEecC
Q 046345 537 LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFS-SLPSSLGRLTSL-------------QTLCLHW 602 (1462)
Q Consensus 537 ~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L-------------r~L~L~~ 602 (1462)
...++||.|.+.++. +..+|.. |.++++|++|++++|.+. .+|.+++++.+| ++|++++
T Consensus 8 ~~~~~L~~L~l~~n~------l~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSN------LTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred cccccchhhhcccCc------hhhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 344666677766665 4556655 467777777777777765 567777777664 6666666
Q ss_pred cccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccC
Q 046345 603 CELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEG 682 (1462)
Q Consensus 603 ~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~ 682 (1462)
|.++..+.+ ..+|++|++++|.++.+|.. +++|++|++++| .+..+|.. .++|++|++++|.+..
T Consensus 81 ~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n~l~~----- 145 (454)
T 1jl5_A 81 LGLSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNNQLEK----- 145 (454)
T ss_dssp SCCSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSSCCSS-----
T ss_pred CccccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCCCCCC-----
Confidence 666552222 25666666666666666542 356666666665 44444331 1466666666654321
Q ss_pred CCccchHhhhcCCCCcEEEEEeecccC
Q 046345 683 GSNARLDELKELSKLTTLEIHVRDAEI 709 (1462)
Q Consensus 683 ~~~~~~~~L~~l~~L~~L~l~~~~~~~ 709 (1462)
+..++.+++|++|+++.|.+..
T Consensus 146 -----lp~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 146 -----LPELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp -----CCCCTTCTTCCEEECCSSCCSC
T ss_pred -----CcccCCCCCCCEEECCCCcCcc
Confidence 1135566666666666554443
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.9e-22 Score=246.05 Aligned_cols=172 Identities=17% Similarity=0.217 Sum_probs=124.0
Q ss_pred EEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCC-CC-CcccCCCCcCcEEE
Q 046345 522 AISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFS-SL-PSSLGRLTSLQTLC 599 (1462)
Q Consensus 522 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~l-p~~i~~L~~Lr~L~ 599 (1462)
.+...+.++..+|. -.+++++|++.+|. +..++...|.++++|++|++++|.+. .+ |..|..+++|++|+
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNS------IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSC------CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCc------cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 35555666777776 33788888888876 45665666788888999999988886 45 45788888999999
Q ss_pred ecCcccCC--ccccccccCCcEEEecCCCCCc-cchh--hccccccCEEccCCcccccccCc-cccccccccceeeccCc
Q 046345 600 LHWCELED--IAIVGQLKKLEILSFRDSDIKE-LPLE--IGLLTRLSLLDLSDCWSLEVIAP-NVISKLSRLEELYMGGS 673 (1462)
Q Consensus 600 L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~ 673 (1462)
|++|.+.. |..|+++++|++|++++|.++. +|.. ++++++|++|++++| .+..+++ ..++++++|++|++++|
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence 99888876 6778888899999998888875 4444 788888999998887 5666543 33788888888888887
Q ss_pred ccccccccCCCccchHhhhcC--CCCcEEEEEeecccCC
Q 046345 674 FSQWDKVEGGSNARLDELKEL--SKLTTLEIHVRDAEIL 710 (1462)
Q Consensus 674 ~~~~~~~~~~~~~~~~~L~~l--~~L~~L~l~~~~~~~~ 710 (1462)
.+... ....+..+ .+|+.|+++.+....+
T Consensus 165 ~l~~~--------~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 165 KVKSI--------CEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp CBSCC--------CTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred ccccc--------ChhhhhccccccccccccccCccccc
Confidence 65321 12233333 4566666666555443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1e-21 Score=231.51 Aligned_cols=147 Identities=18% Similarity=0.308 Sum_probs=106.0
Q ss_pred CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccC
Q 046345 537 LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKK 616 (1462)
Q Consensus 537 ~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~ 616 (1462)
..+++|++|.+.++. +..++. |..+++|++|++++|.++.+|. +..+++|++|++++|.+..++.+.++++
T Consensus 41 ~~l~~L~~L~l~~~~------i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~ 111 (347)
T 4fmz_A 41 EELESITKLVVAGEK------VASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTN 111 (347)
T ss_dssp HHHTTCSEEECCSSC------CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred hhcccccEEEEeCCc------cccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCc
Confidence 456777777777765 344443 6778888888888888887766 7888888888888888877667888888
Q ss_pred CcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCC
Q 046345 617 LEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSK 696 (1462)
Q Consensus 617 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 696 (1462)
|++|++++|.+..+|. +..+++|++|++++|.....++. +.++++|++|++++|.... ...+..+++
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~----------~~~~~~l~~ 178 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD----------VTPIANLTD 178 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC----------CGGGGGCTT
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC----------chhhccCCC
Confidence 8888888888887766 77888888888888755555443 7778888888887765421 122556666
Q ss_pred CcEEEEEee
Q 046345 697 LTTLEIHVR 705 (1462)
Q Consensus 697 L~~L~l~~~ 705 (1462)
|+.|+++.+
T Consensus 179 L~~L~l~~n 187 (347)
T 4fmz_A 179 LYSLSLNYN 187 (347)
T ss_dssp CSEEECTTS
T ss_pred CCEEEccCC
Confidence 666666544
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=3.3e-21 Score=230.78 Aligned_cols=152 Identities=13% Similarity=0.254 Sum_probs=127.6
Q ss_pred ccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC--cccc
Q 046345 535 ERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED--IAIV 611 (1462)
Q Consensus 535 ~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i 611 (1462)
....++++|.|.+.++. +..+|..+|..+++|++|++++|.++.+|. .|..+++|++|++++|.+.. +..+
T Consensus 40 ~~~~l~~l~~l~l~~~~------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 40 EDITLNNQKIVTFKNST------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp SSGGGCCCSEEEEESCE------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccCCceEEEecCCc------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 34567899999998876 688999999999999999999999998864 89999999999999999988 4678
Q ss_pred ccccCCcEEEecCCCCCccchhh-ccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHh
Q 046345 612 GQLKKLEILSFRDSDIKELPLEI-GLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDE 690 (1462)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 690 (1462)
+++++|++|++++|.++.+|..+ +++++|++|++++| .+..+++..++++++|++|++++|.+.. ..
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~ 181 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH-----------VD 181 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB-----------CC
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc-----------cc
Confidence 99999999999999999999875 89999999999998 6778877778999999999998876521 12
Q ss_pred hhcCCCCcEEEEEe
Q 046345 691 LKELSKLTTLEIHV 704 (1462)
Q Consensus 691 L~~l~~L~~L~l~~ 704 (1462)
++.+++|+.|+++.
T Consensus 182 ~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 182 LSLIPSLFHANVSY 195 (390)
T ss_dssp GGGCTTCSEEECCS
T ss_pred cccccccceeeccc
Confidence 44556666665543
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=8.2e-22 Score=238.82 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=50.9
Q ss_pred cCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--ccccccccCC-------------cEEEecCCCCCccch
Q 046345 568 GTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKKL-------------EILSFRDSDIKELPL 632 (1462)
Q Consensus 568 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L-------------~~L~L~~~~i~~lp~ 632 (1462)
+.++||+|++++|.+..+|++|+++++|++|++++|.+.. |..++++.+| ++|++++|+++.+|.
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 3578999999999999999999999999999999999864 8889988876 667777766666665
Q ss_pred hhccccccCEEccCCcccccccCccccccccccceeeccCcc
Q 046345 633 EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 633 ~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
-.++|++|++++| .+..+|.. +++|++|++++|.
T Consensus 89 ---~~~~L~~L~l~~n-~l~~lp~~----~~~L~~L~l~~n~ 122 (454)
T 1jl5_A 89 ---LPPHLESLVASCN-SLTELPEL----PQSLKSLLVDNNN 122 (454)
T ss_dssp ---CCTTCSEEECCSS-CCSSCCCC----CTTCCEEECCSSC
T ss_pred ---CcCCCCEEEccCC-cCCccccc----cCCCcEEECCCCc
Confidence 2356666666665 45555532 2556666665553
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=6e-21 Score=234.26 Aligned_cols=365 Identities=18% Similarity=0.174 Sum_probs=224.9
Q ss_pred cCcEEEEccCCCCccCCc--cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCc
Q 046345 518 EDPIAISLPHRDIEVLPE--RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTS 594 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~ 594 (1462)
..++++.+.++.+..++. ...+++|++|++.+|.. ...++...|.++++|++|+|++|.+..+ |..|+++++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-----~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-----GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-----TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcc-----cceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 569999999999988643 36799999999999874 3467777899999999999999999876 788999999
Q ss_pred CcEEEecCcccCC--ccc--cccccCCcEEEecCCCCCcc-chh-hccccccCEEccCCcccccccCccccccc--cccc
Q 046345 595 LQTLCLHWCELED--IAI--VGQLKKLEILSFRDSDIKEL-PLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKL--SRLE 666 (1462)
Q Consensus 595 Lr~L~L~~~~l~~--~~~--i~~L~~L~~L~L~~~~i~~l-p~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L--~~L~ 666 (1462)
|++|++++|.+.. +.. ++++++|++|++++|.+..+ |.. ++++++|++|++++| .+..+++..+.++ .+|+
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhcccccccc
Confidence 9999999999987 544 99999999999999999977 554 889999999999998 5777666657776 7899
Q ss_pred eeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEc
Q 046345 667 ELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQ 746 (1462)
Q Consensus 667 ~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~ 746 (1462)
.|+++++.................+..+++|+.|+++.|.+..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------------------------------------- 226 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE------------------------------------- 226 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-------------------------------------
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccc-------------------------------------
Confidence 9999888764322111111111223345667777776554321
Q ss_pred cCcchhHHHHHHHH--hccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccce
Q 046345 747 GLEKVSILLWMKLL--LKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLES 824 (1462)
Q Consensus 747 ~~~~~~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~ 824 (1462)
..+.++... ..+++.|.+.++........ ...++.+.. ..+.....++|+.
T Consensus 227 -----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~------------------~~~~~~~~~~L~~ 279 (455)
T 3v47_A 227 -----SMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----HTNFKDPDN------------------FTFKGLEASGVKT 279 (455)
T ss_dssp -----HHHHHHHHHTTTCCEEEEECTTCTTTSCCTT----CCSSCCCCT------------------TTTGGGTTSCCCE
T ss_pred -----cchhhhhccccccceeeEeeccccccccccc----hhhhccCcc------------------cccccccccCceE
Confidence 112222221 13444555444322111000 000000000 0001112244555
Q ss_pred ecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccc
Q 046345 825 LSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKE 904 (1462)
Q Consensus 825 L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 904 (1462)
|+++++ .+..+....+ +.+++|+.|++++| .+..+++ ..+.++++|++|++++|. +..+...
T Consensus 280 L~l~~n-~l~~~~~~~~---~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~----------- 341 (455)
T 3v47_A 280 CDLSKS-KIFALLKSVF---SHFTDLEQLTLAQN-EINKIDD-NAFWGLTHLLKLNLSQNF-LGSIDSR----------- 341 (455)
T ss_dssp EECCSS-CCCEECTTTT---TTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECGG-----------
T ss_pred EEecCc-cccccchhhc---ccCCCCCEEECCCC-cccccCh-hHhcCcccCCEEECCCCc-cCCcChh-----------
Confidence 555542 2222221111 34566666666654 3333332 234556677777776653 2222211
Q ss_pred eeccCCCcccccccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEecccc
Q 046345 905 IIAEDDPIQKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCES 984 (1462)
Q Consensus 905 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 984 (1462)
....+++|+.|++++| .+..+.... +..+++|+.|++++|. ++.+ ++..+..+++|++|++++++-
T Consensus 342 --------~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 342 --------MFENLDKLEVLDLSYN-HIRALGDQS---FLGLPNLKELALDTNQ-LKSV-PDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp --------GGTTCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSC-CSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred --------HhcCcccCCEEECCCC-cccccChhh---ccccccccEEECCCCc-cccC-CHhHhccCCcccEEEccCCCc
Confidence 1134667777777776 444443322 3367777888887754 4443 344567777888888877553
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=4.9e-21 Score=232.18 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=78.0
Q ss_pred hhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEcc
Q 046345 566 FEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDL 645 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 645 (1462)
+.++++|++|++++|.++.+| .++.+++|++|++++|.++..+ ++.+++|++|++++|.++.+| ++++++|++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 567778888888888887776 5778888888888888877743 777888888888888887775 778888888888
Q ss_pred CCcccccccCccccccccccceeeccCccc
Q 046345 646 SDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 646 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
++| .+..+| ++++++|++|++++|.+
T Consensus 114 ~~N-~l~~l~---~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 114 DTN-KLTKLD---VSQNPLLTYLNCARNTL 139 (457)
T ss_dssp CSS-CCSCCC---CTTCTTCCEEECTTSCC
T ss_pred CCC-cCCeec---CCCCCcCCEEECCCCcc
Confidence 887 566653 67777888887777654
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=3.1e-20 Score=229.16 Aligned_cols=313 Identities=19% Similarity=0.196 Sum_probs=169.2
Q ss_pred EEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEe
Q 046345 522 AISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCL 600 (1462)
Q Consensus 522 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L 600 (1462)
.+...+..+..+|... .+++++|++.+|. +..++...|.++++|++|+|++|.++.+ |..|.++++|++|+|
T Consensus 15 ~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI-PTETRLLDLGKNR------IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEECCCCc------cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence 3444445555555422 2456666666555 3445444556666666666666666554 455666666666666
Q ss_pred cCcccCC-c-cccccccCCcEEEecCCCCCcc-chhhccccccCEEccCCcccccccCccccccccccceeeccCccccc
Q 046345 601 HWCELED-I-AIVGQLKKLEILSFRDSDIKEL-PLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQW 677 (1462)
Q Consensus 601 ~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 677 (1462)
++|.++. + ..|.++++|++|++++|.+..+ |..+.++++|++|++++| .+..+++..++++++|++|++++|.+..
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcc
Confidence 6666655 2 3455666666666666666544 334556666666666665 4455544445566666666665554311
Q ss_pred ccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHH
Q 046345 678 DKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWM 757 (1462)
Q Consensus 678 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 757 (1462)
.....+..+++|+.|+++.+.+..++.
T Consensus 167 --------~~~~~l~~l~~L~~L~l~~n~i~~~~~--------------------------------------------- 193 (477)
T 2id5_A 167 --------IPTEALSHLHGLIVLRLRHLNINAIRD--------------------------------------------- 193 (477)
T ss_dssp --------CCHHHHTTCTTCCEEEEESCCCCEECT---------------------------------------------
T ss_pred --------cChhHhcccCCCcEEeCCCCcCcEeCh---------------------------------------------
Confidence 112334555555555555432211000
Q ss_pred HHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccccccccc
Q 046345 758 KLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETIC 837 (1462)
Q Consensus 758 ~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 837 (1462)
..+..+++|++|+++++..+..++
T Consensus 194 -------------------------~~~~~l~~L~~L~l~~~~~~~~~~------------------------------- 217 (477)
T 2id5_A 194 -------------------------YSFKRLYRLKVLEISHWPYLDTMT------------------------------- 217 (477)
T ss_dssp -------------------------TCSCSCTTCCEEEEECCTTCCEEC-------------------------------
T ss_pred -------------------------hhcccCcccceeeCCCCccccccC-------------------------------
Confidence 013355666777766654433321
Q ss_pred cccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccc
Q 046345 838 DSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIF 917 (1462)
Q Consensus 838 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1462)
... ....+|+.|++++| +++.++. ..+.++++|++|+++++. +..+.... ...+
T Consensus 218 ~~~----~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~-------------------~~~l 271 (477)
T 2id5_A 218 PNC----LYGLNLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGSM-------------------LHEL 271 (477)
T ss_dssp TTT----TTTCCCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTTS-------------------CTTC
T ss_pred ccc----ccCccccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChhh-------------------cccc
Confidence 111 12336777777776 4555543 356677888888888754 33332211 1356
Q ss_pred cccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEeccc
Q 046345 918 PRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCE 983 (1462)
Q Consensus 918 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 983 (1462)
++|+.|+|+++ .+..+.... +..+++|+.|++++|. ++.+ ++..+..+++|+.|++++++
T Consensus 272 ~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 272 LRLQEIQLVGG-QLAVVEPYA---FRGLNYLRVLNVSGNQ-LTTL-EESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCCEEECCSS-CCSEECTTT---BTTCTTCCEEECCSSC-CSCC-CGGGBSCGGGCCEEECCSSC
T ss_pred ccCCEEECCCC-ccceECHHH---hcCcccCCEEECCCCc-Ccee-CHhHcCCCcccCEEEccCCC
Confidence 67777777776 444443322 3356777777777663 4443 34455666777777776643
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=9.4e-21 Score=229.71 Aligned_cols=144 Identities=23% Similarity=0.234 Sum_probs=94.9
Q ss_pred CCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCC
Q 046345 538 QCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKL 617 (1462)
Q Consensus 538 ~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L 617 (1462)
.+++|++|++.++. +..+| .|..+++|++|++++|.++.+| ++.+++|++|++++|.++..+ ++++++|
T Consensus 40 ~l~~L~~L~Ls~n~------l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L 108 (457)
T 3bz5_A 40 QLATLTSLDCHNSS------ITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKL 108 (457)
T ss_dssp HHTTCCEEECCSSC------CCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTC
T ss_pred HcCCCCEEEccCCC------cccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcC
Confidence 45667777776665 34444 2567777777777777777765 677777777777777776643 6777777
Q ss_pred cEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCC
Q 046345 618 EILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKL 697 (1462)
Q Consensus 618 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L 697 (1462)
++|++++|.++.+| ++++++|++|++++| .+..++ ++++++|++|++++|.... .+ .++.+++|
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~---------~~-~~~~l~~L 172 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKIT---------KL-DVTPQTQL 172 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCC---------CC-CCTTCTTC
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccc---------cc-ccccCCcC
Confidence 77777777777765 677777777777776 455552 5677777777777663211 01 35566777
Q ss_pred cEEEEEeeccc
Q 046345 698 TTLEIHVRDAE 708 (1462)
Q Consensus 698 ~~L~l~~~~~~ 708 (1462)
+.|+++.|.+.
T Consensus 173 ~~L~ls~n~l~ 183 (457)
T 3bz5_A 173 TTLDCSFNKIT 183 (457)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCccc
Confidence 77777665544
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.3e-20 Score=238.24 Aligned_cols=306 Identities=13% Similarity=0.125 Sum_probs=228.6
Q ss_pred cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEEecCcccCC--ccccc
Q 046345 536 RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLHWCELED--IAIVG 612 (1462)
Q Consensus 536 ~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~ 612 (1462)
...+++++.|.+.++. +..+|..+|..+++|++|+|++|.+..+| ..|+.+.+|++|+|++|.+.. +..|+
T Consensus 47 ~l~l~~l~~l~l~~~~------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 47 DITLNNQKIVTFKNST------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp SGGGCCCSEEEESSCE------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccCCCceEEEeeCCC------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 4567899999998876 68899999999999999999999999876 489999999999999999988 46789
Q ss_pred cccCCcEEEecCCCCCccchhh-ccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhh
Q 046345 613 QLKKLEILSFRDSDIKELPLEI-GLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDEL 691 (1462)
Q Consensus 613 ~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 691 (1462)
++++|++|++++|.++.+|..+ +++++|++|++++| .+..+++..++++++|++|++++|.+.. ..+
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~ 188 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH-----------VDL 188 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB-----------CCG
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC-----------cCh
Confidence 9999999999999999999875 89999999999998 6888887779999999999999987632 135
Q ss_pred hcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEecc
Q 046345 692 KELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSK 771 (1462)
Q Consensus 692 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 771 (1462)
+.+++|+.|++++|.+..++. ..+|+.|.+. +.....++.. ..++|+.|++.+
T Consensus 189 ~~l~~L~~L~l~~n~l~~l~~---~~~L~~L~ls---------------------~n~l~~~~~~---~~~~L~~L~L~~ 241 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTLAI---PIAVEELDAS---------------------HNSINVVRGP---VNVELTILKLQH 241 (597)
T ss_dssp GGCTTCSEEECCSSCCSEEEC---CTTCSEEECC---------------------SSCCCEEECS---CCSCCCEEECCS
T ss_pred hhhhhhhhhhcccCccccccC---Cchhheeecc---------------------CCcccccccc---cCCCCCEEECCC
Confidence 678899999998876654322 2344444432 2211111100 125677888776
Q ss_pred ccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcC
Q 046345 772 LKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLR 851 (1462)
Q Consensus 772 ~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~ 851 (1462)
+.... . ..+..+++|++|+++++.-....+. ....+++|+.|++++ +.+..++... ..+++|+
T Consensus 242 n~l~~-~----~~l~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~Ls~-N~l~~l~~~~----~~l~~L~ 304 (597)
T 3oja_B 242 NNLTD-T----AWLLNYPGLVEVDLSYNELEKIMYH-------PFVKMQRLERLYISN-NRLVALNLYG----QPIPTLK 304 (597)
T ss_dssp SCCCC-C----GGGGGCTTCSEEECCSSCCCEEESG-------GGTTCSSCCEEECTT-SCCCEEECSS----SCCTTCC
T ss_pred CCCCC-C----hhhccCCCCCEEECCCCccCCCCHH-------HhcCccCCCEEECCC-CCCCCCCccc----ccCCCCc
Confidence 54322 1 2366899999999998753322221 335679999999998 4666654322 4689999
Q ss_pred EEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeeccccc
Q 046345 852 IIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLA 929 (1462)
Q Consensus 852 ~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 929 (1462)
.|++++| .+..+|+ .+..+++|+.|++++|. +..+. ...+++|+.|++++++
T Consensus 305 ~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~----------------------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 305 VLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK----------------------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC----------------------CCTTCCCSEEECCSSC
T ss_pred EEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcC----------------------hhhcCCCCEEEeeCCC
Confidence 9999997 5667765 56889999999999975 32221 1356778888887773
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=1.1e-19 Score=213.92 Aligned_cols=300 Identities=16% Similarity=0.170 Sum_probs=229.6
Q ss_pred cCcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 518 EDPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
+.++++.+.++.+..++....+++|++|++.+|. +..++. |.++++|++|++++|.++.+| .+..+++|++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~------i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ------ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC------CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCc------cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 3689999999999999887889999999999987 456665 899999999999999999886 6999999999
Q ss_pred EEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCccccc
Q 046345 598 LCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQW 677 (1462)
Q Consensus 598 L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 677 (1462)
|++++|.+.....+..+++|++|++++|.....+..+..+++|++|++++| .+..++. ++++++|++|++++|.+.
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~- 190 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE- 190 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCC-
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccc-
Confidence 999999999955599999999999999955545556999999999999998 5776665 889999999999988652
Q ss_pred ccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHH
Q 046345 678 DKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWM 757 (1462)
Q Consensus 678 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 757 (1462)
.+..+..+++|+.|+++.+.+...+....
T Consensus 191 ---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------------------------ 219 (347)
T 4fmz_A 191 ---------DISPLASLTSLHYFTAYVNQITDITPVAN------------------------------------------ 219 (347)
T ss_dssp ---------CCGGGGGCTTCCEEECCSSCCCCCGGGGG------------------------------------------
T ss_pred ---------ccccccCCCccceeecccCCCCCCchhhc------------------------------------------
Confidence 12337889999999998876654432111
Q ss_pred HHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccccccccc
Q 046345 758 KLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETIC 837 (1462)
Q Consensus 758 ~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 837 (1462)
+++|++|++.++.. ... +.+..+++|++|+++++. +..+. ....+++|+.|+++++ .++.+.
T Consensus 220 ---~~~L~~L~l~~n~l-~~~----~~~~~l~~L~~L~l~~n~-l~~~~--------~~~~l~~L~~L~l~~n-~l~~~~ 281 (347)
T 4fmz_A 220 ---MTRLNSLKIGNNKI-TDL----SPLANLSQLTWLEIGTNQ-ISDIN--------AVKDLTKLKMLNVGSN-QISDIS 281 (347)
T ss_dssp ---CTTCCEEECCSSCC-CCC----GGGTTCTTCCEEECCSSC-CCCCG--------GGTTCTTCCEEECCSS-CCCCCG
T ss_pred ---CCcCCEEEccCCcc-CCC----cchhcCCCCCEEECCCCc-cCCCh--------hHhcCCCcCEEEccCC-ccCCCh
Confidence 24555666655432 111 115578899999998864 32221 3456789999999885 555553
Q ss_pred cccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccc
Q 046345 838 DSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIF 917 (1462)
Q Consensus 838 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1462)
. + ..+++|+.|++++|+ +...++ ..+..+++|++|++++|+ +..+.. ...+
T Consensus 282 ~--~---~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~---------------------~~~l 332 (347)
T 4fmz_A 282 V--L---NNLSQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP---------------------LASL 332 (347)
T ss_dssp G--G---GGCTTCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG---------------------GGGC
T ss_pred h--h---cCCCCCCEEECcCCc-CCCcCh-hHhhccccCCEEEccCCc-cccccC---------------------hhhh
Confidence 2 1 578999999999984 444433 467889999999999986 433321 1467
Q ss_pred cccceeecccc
Q 046345 918 PRLEELELKRL 928 (1462)
Q Consensus 918 ~~L~~L~L~~~ 928 (1462)
++|+.|++++|
T Consensus 333 ~~L~~L~l~~N 343 (347)
T 4fmz_A 333 SKMDSADFANQ 343 (347)
T ss_dssp TTCSEESSSCC
T ss_pred hccceeehhhh
Confidence 88999988887
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=7.3e-20 Score=225.78 Aligned_cols=305 Identities=16% Similarity=0.197 Sum_probs=200.7
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchh-
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE- 633 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~- 633 (1462)
+..+|..+ .+.+++|+|++|.++.+ |..|.++++|++|+|++|.+.. |..|+++++|++|+|++|.++.+|..
T Consensus 23 l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 99 (477)
T 2id5_A 23 FVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99 (477)
T ss_dssp CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred cCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc
Confidence 56677654 35789999999999887 4678999999999999998887 67889999999999999999988875
Q ss_pred hccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCcc
Q 046345 634 IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD 713 (1462)
Q Consensus 634 i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 713 (1462)
+.++++|++|++++| .+..+++..+.++++|++|++++|.+.. .....+..+++|+.|+++.|.+..++.
T Consensus 100 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~- 169 (477)
T 2id5_A 100 FTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY--------ISHRAFSGLNSLEQLTLEKCNLTSIPT- 169 (477)
T ss_dssp STTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCE--------ECTTSSTTCTTCCEEEEESCCCSSCCH-
T ss_pred ccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccce--------eChhhccCCCCCCEEECCCCcCcccCh-
Confidence 578999999999987 5777766668889999999988876532 122456667777777777554332111
Q ss_pred ccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCcE
Q 046345 714 LVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNR 793 (1462)
Q Consensus 714 ~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~ 793 (1462)
.. +..+++|+.
T Consensus 170 ------------------------------------------------------------------~~---l~~l~~L~~ 180 (477)
T 2id5_A 170 ------------------------------------------------------------------EA---LSHLHGLIV 180 (477)
T ss_dssp ------------------------------------------------------------------HH---HTTCTTCCE
T ss_pred ------------------------------------------------------------------hH---hcccCCCcE
Confidence 00 235667777
Q ss_pred EEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHh
Q 046345 794 LQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNL 873 (1462)
Q Consensus 794 L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L 873 (1462)
|++.++. +..+ ....+ ..+++|+.|++++|+.+..+++ .....
T Consensus 181 L~l~~n~-i~~~-------------------------------~~~~~---~~l~~L~~L~l~~~~~~~~~~~--~~~~~ 223 (477)
T 2id5_A 181 LRLRHLN-INAI-------------------------------RDYSF---KRLYRLKVLEISHWPYLDTMTP--NCLYG 223 (477)
T ss_dssp EEEESCC-CCEE-------------------------------CTTCS---CSCTTCCEEEEECCTTCCEECT--TTTTT
T ss_pred EeCCCCc-CcEe-------------------------------Chhhc---ccCcccceeeCCCCccccccCc--ccccC
Confidence 7777643 1111 11111 3567888888888887777665 22334
Q ss_pred ccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeecccccccccccccCCCcccCCCCceEEEE
Q 046345 874 LRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTV 953 (1462)
Q Consensus 874 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i 953 (1462)
.+|++|++++|. +..++.. ....+++|+.|+|+++ .+..+.... +..+++|+.|++
T Consensus 224 ~~L~~L~l~~n~-l~~~~~~-------------------~~~~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~L 279 (477)
T 2id5_A 224 LNLTSLSITHCN-LTAVPYL-------------------AVRHLVYLRFLNLSYN-PISTIEGSM---LHELLRLQEIQL 279 (477)
T ss_dssp CCCSEEEEESSC-CCSCCHH-------------------HHTTCTTCCEEECCSS-CCCEECTTS---CTTCTTCCEEEC
T ss_pred ccccEEECcCCc-ccccCHH-------------------HhcCccccCeeECCCC-cCCccChhh---ccccccCCEEEC
Confidence 588888888863 3332211 1135677777777777 354444332 235677777777
Q ss_pred ecCCCcCccCchhhhhhcccCcEEEEecccccceecccCCCCCCcccccccccccccceeeecCCc
Q 046345 954 WKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLT 1019 (1462)
Q Consensus 954 ~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 1019 (1462)
++|. ++.+ .+..+.++++|+.|++++| .++.++.. .+..+++|+.|++.+++
T Consensus 280 ~~n~-l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~-----------~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 280 VGGQ-LAVV-EPYAFRGLNYLRVLNVSGN-QLTTLEES-----------VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CSSC-CSEE-CTTTBTTCTTCCEEECCSS-CCSCCCGG-----------GBSCGGGCCEEECCSSC
T ss_pred CCCc-cceE-CHHHhcCcccCCEEECCCC-cCceeCHh-----------HcCCCcccCEEEccCCC
Confidence 7664 3333 2344566777777777764 34444321 34456666666666543
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=6.1e-20 Score=232.15 Aligned_cols=304 Identities=17% Similarity=0.188 Sum_probs=200.1
Q ss_pred cCCcceEEEecCCCCCCCCcc-cCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchh-hccccccCEE
Q 046345 568 GTEGLKVLDFTGIHFSSLPSS-LGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLL 643 (1462)
Q Consensus 568 ~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L 643 (1462)
.+.++++|+++++.+..+|.. +..+++|++|+|++|.+.. +..|+.+++|++|+|++|.++.+|+. ++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999999875 6889999999999999988 46899999999999999999988765 6899999999
Q ss_pred ccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeE
Q 046345 644 DLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYR 723 (1462)
Q Consensus 644 ~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 723 (1462)
++++| .+..+|+..++++++|++|++++|.+.. ..+..++.+++|+.|+++.|.+..++
T Consensus 129 ~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~------------ 187 (597)
T 3oja_B 129 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVD------------ 187 (597)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB--------CCTTTTTTCTTCCEEECTTSCCSBCC------------
T ss_pred EeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCC--------CChhhhhcCCcCcEEECcCCCCCCcC------------
Confidence 99998 7889998878999999999999987632 22345778888888888766543221
Q ss_pred EEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccce
Q 046345 724 ICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEIL 803 (1462)
Q Consensus 724 i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~ 803 (1462)
.+.+++|+.|.++++. +.
T Consensus 188 -------------------------------------------------------------~~~l~~L~~L~l~~n~-l~ 205 (597)
T 3oja_B 188 -------------------------------------------------------------LSLIPSLFHANVSYNL-LS 205 (597)
T ss_dssp -------------------------------------------------------------GGGCTTCSEEECCSSC-CS
T ss_pred -------------------------------------------------------------hhhhhhhhhhhcccCc-cc
Confidence 1123344444444321 11
Q ss_pred eeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEec
Q 046345 804 QIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDY 883 (1462)
Q Consensus 804 ~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~ 883 (1462)
.+ ...++|+.|+++++ .+..++. ..+++|+.|.+++| .+... ..+..+++|+.|++++
T Consensus 206 ~l-----------~~~~~L~~L~ls~n-~l~~~~~------~~~~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 206 TL-----------AIPIAVEELDASHN-SINVVRG------PVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSY 263 (597)
T ss_dssp EE-----------ECCTTCSEEECCSS-CCCEEEC------SCCSCCCEEECCSS-CCCCC---GGGGGCTTCSEEECCS
T ss_pred cc-----------cCCchhheeeccCC-ccccccc------ccCCCCCEEECCCC-CCCCC---hhhccCCCCCEEECCC
Confidence 11 11234455554442 2222221 23456666666665 23332 2445677777777777
Q ss_pred ccCccccccCCCCcccccccceeccCCCcccccccccceeecccccccccccccCCCcccCCCCceEEEEecCCCcCccC
Q 046345 884 CENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVF 963 (1462)
Q Consensus 884 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~ 963 (1462)
+. +..+... ....+++|+.|+|++| .+..++.. ...+++|+.|++++|. ++.+
T Consensus 264 N~-l~~~~~~-------------------~~~~l~~L~~L~Ls~N-~l~~l~~~----~~~l~~L~~L~Ls~N~-l~~i- 316 (597)
T 3oja_B 264 NE-LEKIMYH-------------------PFVKMQRLERLYISNN-RLVALNLY----GQPIPTLKVLDLSHNH-LLHV- 316 (597)
T ss_dssp SC-CCEEESG-------------------GGTTCSSCCEEECTTS-CCCEEECS----SSCCTTCCEEECCSSC-CCCC-
T ss_pred Cc-cCCCCHH-------------------HhcCccCCCEEECCCC-CCCCCCcc----cccCCCCcEEECCCCC-CCcc-
Confidence 53 3222211 1135677777777776 45444332 2356778888887765 3444
Q ss_pred chhhhhhcccCcEEEEecccccceecccCCCCCCcccccccccccccceeeecCCc
Q 046345 964 SHSMVNNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLT 1019 (1462)
Q Consensus 964 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 1019 (1462)
+..+..+++|+.|++++|. +..+ .+..+++|+.|+|++++
T Consensus 317 -~~~~~~l~~L~~L~L~~N~-l~~~--------------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 317 -ERNQPQFDRLENLYLDHNS-IVTL--------------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp -GGGHHHHTTCSEEECCSSC-CCCC--------------CCCTTCCCSEEECCSSC
T ss_pred -CcccccCCCCCEEECCCCC-CCCc--------------ChhhcCCCCEEEeeCCC
Confidence 3345677788888887754 3332 23356666666666643
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1.5e-19 Score=216.45 Aligned_cols=299 Identities=15% Similarity=0.133 Sum_probs=226.1
Q ss_pred cCcEEEEccCCCCccCCcc--CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCc
Q 046345 518 EDPIAISLPHRDIEVLPER--LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTS 594 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~ 594 (1462)
.+++++.+.++.+..+|.. ..+++|++|++.++. +..++...|..+++|++|++++|.+..+| ..++.+++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 4689999999999999874 478999999999887 57777777999999999999999999885 56899999
Q ss_pred CcEEEecCcccCC-ccc-cccccCCcEEEecCCCCCccch-hhccccccCEEccCCcccccccCccccccccccceeecc
Q 046345 595 LQTLCLHWCELED-IAI-VGQLKKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMG 671 (1462)
Q Consensus 595 Lr~L~L~~~~l~~-~~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 671 (1462)
|++|++++|.++. |.. ++++++|++|++++|.+..++. .++++++|++|++++| .+..++ ++.+++|++|+++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVS 194 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecc
Confidence 9999999999998 544 6899999999999999998855 5889999999999998 566654 5778999999998
Q ss_pred CcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcch
Q 046345 672 GSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKV 751 (1462)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~ 751 (1462)
+|... .+....+|+.|+++.+.+..++.. .
T Consensus 195 ~n~l~-------------~~~~~~~L~~L~l~~n~l~~~~~~-~------------------------------------ 224 (390)
T 3o6n_A 195 YNLLS-------------TLAIPIAVEELDASHNSINVVRGP-V------------------------------------ 224 (390)
T ss_dssp SSCCS-------------EEECCSSCSEEECCSSCCCEEECC-C------------------------------------
T ss_pred ccccc-------------ccCCCCcceEEECCCCeeeecccc-c------------------------------------
Confidence 87652 234456889999887766543221 0
Q ss_pred hHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccc
Q 046345 752 SILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLI 831 (1462)
Q Consensus 752 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~ 831 (1462)
.++|+.|++.++.. ... +.+..+++|++|+++++. +..+... ....+++|+.|++++ .
T Consensus 225 ---------~~~L~~L~l~~n~l-~~~----~~l~~l~~L~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~~-n 282 (390)
T 3o6n_A 225 ---------NVELTILKLQHNNL-TDT----AWLLNYPGLVEVDLSYNE-LEKIMYH------PFVKMQRLERLYISN-N 282 (390)
T ss_dssp ---------CSSCCEEECCSSCC-CCC----GGGGGCTTCSEEECCSSC-CCEEESG------GGTTCSSCCEEECCS-S
T ss_pred ---------cccccEEECCCCCC-ccc----HHHcCCCCccEEECCCCc-CCCcChh------HccccccCCEEECCC-C
Confidence 13455555554322 111 225678899999999875 3333111 235578999999998 4
Q ss_pred cccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCC
Q 046345 832 NLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDP 911 (1462)
Q Consensus 832 ~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1462)
.++.++... ..+++|+.|++++| .+..+|+ .+..+++|++|+++++. +..+.
T Consensus 283 ~l~~~~~~~----~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~-------------------- 334 (390)
T 3o6n_A 283 RLVALNLYG----QPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK-------------------- 334 (390)
T ss_dssp CCCEEECSS----SCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC--------------------
T ss_pred cCcccCccc----CCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeC--------------------
Confidence 566654322 46899999999998 5777765 46789999999999975 33221
Q ss_pred cccccccccceeecccc
Q 046345 912 IQKAIFPRLEELELKRL 928 (1462)
Q Consensus 912 ~~~~~~~~L~~L~L~~~ 928 (1462)
...+++|+.|+++++
T Consensus 335 --~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHN 349 (390)
T ss_dssp --CCTTCCCSEEECCSS
T ss_pred --chhhccCCEEEcCCC
Confidence 135677778877776
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=1.4e-18 Score=201.35 Aligned_cols=129 Identities=22% Similarity=0.328 Sum_probs=97.2
Q ss_pred CCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEccCC
Q 046345 569 TEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSD 647 (1462)
Q Consensus 569 l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 647 (1462)
..++++|+|++|.++.+|..++++++|++|+|++|.+.. |..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 467888999999988888888889999999999998887 7788889999999999998888898899999999999998
Q ss_pred cccccccCccccc---------cccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecc
Q 046345 648 CWSLEVIAPNVIS---------KLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDA 707 (1462)
Q Consensus 648 ~~~l~~~p~~~l~---------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 707 (1462)
|.....+|.. ++ ++++|++|++++|.+. ..+..++.+++|++|+++.|.+
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~---------~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR---------SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC---------CCCGGGGGCTTCCEEEEESSCC
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC---------cchHhhcCCCCCCEEEccCCCC
Confidence 8767777765 33 3666666666555432 1223455555666666655443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=5.6e-18 Score=197.52 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=109.8
Q ss_pred cceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC--ccccccccCC
Q 046345 541 RLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED--IAIVGQLKKL 617 (1462)
Q Consensus 541 ~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L 617 (1462)
+++++++.++. +..+|..+ .+.|++|++++|.++.+|. .|+++++|++|++++|.+.. |..++++++|
T Consensus 32 ~l~~l~~~~~~------l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLG------LEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp ETTEEECTTSC------CCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCeEEEecCCC------ccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 56777766655 45566543 2567888888888887765 68888888888888888876 5778888888
Q ss_pred cEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCC
Q 046345 618 EILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKL 697 (1462)
Q Consensus 618 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L 697 (1462)
++|++++|.++.+|..+. ++|++|++++| .+..+++..++++++|++|++++|.... .+.....+..+++|
T Consensus 103 ~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS------SGIENGAFQGMKKL 173 (330)
T ss_dssp CEEECCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG------GGBCTTGGGGCTTC
T ss_pred CEEECCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc------cCcChhhccCCCCc
Confidence 888888888888887655 78888888887 6777777667888888888888776521 11223456677777
Q ss_pred cEEEEEeecccC
Q 046345 698 TTLEIHVRDAEI 709 (1462)
Q Consensus 698 ~~L~l~~~~~~~ 709 (1462)
+.|+++.+.+..
T Consensus 174 ~~L~l~~n~l~~ 185 (330)
T 1xku_A 174 SYIRIADTNITT 185 (330)
T ss_dssp CEEECCSSCCCS
T ss_pred CEEECCCCcccc
Confidence 777777665443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=2.6e-18 Score=200.53 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=96.6
Q ss_pred cceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEEecCcccCC--ccccccccCC
Q 046345 541 RLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLHWCELED--IAIVGQLKKL 617 (1462)
Q Consensus 541 ~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L 617 (1462)
+++++++.++. +..+|..++ ++|++|++++|.+..++ ..|.++++|++|++++|.++. |..++++++|
T Consensus 34 ~l~~l~~~~~~------l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLG------LKAVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSC------CSSCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCCC------ccccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 67778777665 456666543 57888888888888774 478888888888888888877 5778888888
Q ss_pred cEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 618 EILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 618 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
++|++++|.++.+|..+. ++|++|++++| .+..+|+..++++++|++|++++|.+
T Consensus 105 ~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CEEECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcc
Confidence 888888888888887665 78888888887 67777777678888888888887765
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=3.3e-19 Score=226.93 Aligned_cols=37 Identities=5% Similarity=-0.001 Sum_probs=20.5
Q ss_pred ccCCcEEEEecCCCccc-ccCcCcCCCCCccEEEEcccc
Q 046345 1100 FSKLKNLVIFRCNNLMN-IFPPLVGIPQSLVNFKLSYCK 1137 (1462)
Q Consensus 1100 l~~L~~L~l~~c~~l~~-~~~~~l~~l~~L~~L~l~~C~ 1137 (1462)
+++|+.|++++|. +++ .++..+..+++|++|+|++|+
T Consensus 462 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 462 SPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 4556677775543 332 122224566667777776665
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=3.8e-19 Score=226.41 Aligned_cols=455 Identities=13% Similarity=0.049 Sum_probs=252.1
Q ss_pred HHHHHhccCCEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeecccccccccccccCCCcccCCCC
Q 046345 868 SMAKNLLRLQKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLANIDKLWPDQLQGLSYCQN 947 (1462)
Q Consensus 868 ~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 947 (1462)
..+..+++|++|++++|+.+......... +..............+++|++|+|++| .+.......+ ...+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l--~~~~~~ 138 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPEN-----WGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRL--AKARAD 138 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTT-----SCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHH--HHHHGG
T ss_pred HHHHhCCCCeEEEecCCcchhhccccccc-----ccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHH--HHhccc
Confidence 35567778888888887765433111000 000000000000125788888888887 3332111111 011444
Q ss_pred -ceEEEEecCCCcCccCchhhhhhcccCcEEEEecccccceecccCCCCCCcccccccccccccceeeecCCcccccccc
Q 046345 948 -LTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTSFAN 1026 (1462)
Q Consensus 948 -L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~ 1026 (1462)
|++|++.+|..+..........++++|++|++++|.. ...... ... .....+++|++|+++++. ++.+..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~-~l~------~~~~~~~~L~~L~L~~n~-~~~~~~ 209 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGK-WLH------ELAQHNTSLEVLNFYMTE-FAKISP 209 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSH-HHH------HHHHHCCCCCEEECTTCC-CSSCCH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcchh-HHH------HHHhcCCCccEEEeeccC-CCccCH
Confidence 8999998887543221223345788899999988752 111000 000 023467888888887643 221110
Q ss_pred CCcccccccccCCCccEEEEeccCCcceeeccccCCcccccccccccccccchhhccccCcccccccccccccccCCcEE
Q 046345 1027 MGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISSEDNAHTEMQTQPFFDEKLSIYYAINLTKILHHLLASESFSKLKNL 1106 (1462)
Q Consensus 1027 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~~~~~~~~~~~l~~L~~L 1106 (1462)
.+. ...+..+++|++|++.+|. +..++.. ...+++|+.|
T Consensus 210 ~~l--~~~~~~~~~L~~L~L~~~~-~~~l~~~--------------------------------------~~~~~~L~~L 248 (592)
T 3ogk_B 210 KDL--ETIARNCRSLVSVKVGDFE-ILELVGF--------------------------------------FKAAANLEEF 248 (592)
T ss_dssp HHH--HHHHHHCTTCCEEECSSCB-GGGGHHH--------------------------------------HHHCTTCCEE
T ss_pred HHH--HHHHhhCCCCcEEeccCcc-HHHHHHH--------------------------------------HhhhhHHHhh
Confidence 000 0013457888888888864 2212110 0225778888
Q ss_pred EEecCCCccc--ccCcCcCCCCCccEEEEcccccceeeeccccccccCceeeeccccccccCcCccccccccCCccccCC
Q 046345 1107 VIFRCNNLMN--IFPPLVGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIAFNELKFLELDKLPRLRSFCLENYTLEFP 1184 (1462)
Q Consensus 1107 ~l~~c~~l~~--~~~~~l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~ 1184 (1462)
.+..+..... ..+..+..+++|+.|+++++. ...++.... .+++|++|++++|. ++..........++
T Consensus 249 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~--------~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFP--------FAAQIRKLDLLYAL-LETEDHCTLIQKCP 318 (592)
T ss_dssp EECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGG--------GGGGCCEEEETTCC-CCHHHHHHHHTTCT
T ss_pred cccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHh--------hcCCCcEEecCCCc-CCHHHHHHHHHhCc
Confidence 8875443311 112337778888888887752 222322211 36788888888887 55443322346788
Q ss_pred CcceEeeecccCcccccCCccccccceeEEeee----------ccccccccccccchhhhHHHHHHHhhccceEEEEecC
Q 046345 1185 SLERFSMKECRNMKTFSQGALFTPKLCKVQMIE----------NEEDDLHHWEGNLNSTIQKHYEEMCLNNLEVLEVRNC 1254 (1462)
Q Consensus 1185 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~----------c~~~~~~~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c 1254 (1462)
+|+.|++.++-.-..++.....+++|++|++++ |. .+.......+... +++|++|+++.+
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~---------~~~~~~~~~l~~~-~~~L~~L~l~~~ 388 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG---------LVSQRGLIALAQG-CQELEYMAVYVS 388 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC---------CCCHHHHHHHHHH-CTTCSEEEEEES
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccC---------ccCHHHHHHHHhh-CccCeEEEeecC
Confidence 889888885433233333333457889999885 66 5555544455566 889999988444
Q ss_pred CCcceeeeeeccccccCCccccCcccCeEEeec---CCCcceeccC--C-CccccCCCcceeeeecCCc-cce-----ec
Q 046345 1255 DSLEEVLHLEELNVDEEHFGPLFPTLLDLKLID---LPRLKRFCNF--T-ENIIGLPELSNLTIENCPN-IET-----FI 1322 (1462)
Q Consensus 1255 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~~~~~--~-~~~~~l~~L~~L~i~~c~~-l~~-----~~ 1322 (1462)
. +...... .+...+++|++|+++. |+.++..+.. . ..+..+++|+.|+++.|.. +.. +.
T Consensus 389 ~-l~~~~~~--------~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 389 D-ITNESLE--------SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp C-CCHHHHH--------HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred C-ccHHHHH--------HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence 3 5432111 1111377889999884 4456543211 0 0013478899999987764 332 11
Q ss_pred --cCCcceEEeccCCCCcccccccccCCcCcccccccccccccccceeecCcccchhhhccccccccccccccCCccccc
Q 046345 1323 --SNSTSILHMTANNKGHQEITSEENFPLAHIQPLFDGKVAFPRLNALKLSRLPKVLHLWSENLESNKVFTKLQTPEISE 1400 (1462)
Q Consensus 1323 --~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~ 1400 (1462)
..+|++|++++|.-. ...+.. -+.++++|++|+|++|+ ++.-.. .. -+..
T Consensus 460 ~~~~~L~~L~L~~n~l~-----------~~~~~~---~~~~~~~L~~L~l~~n~-l~~~~~---------~~----~~~~ 511 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGES-----------DEGLME---FSRGCPNLQKLEMRGCC-FSERAI---------AA----AVTK 511 (592)
T ss_dssp HSCTTCCEEEECSCCSS-----------HHHHHH---HHTCCTTCCEEEEESCC-CBHHHH---------HH----HHHH
T ss_pred HhCccceEeeccCCCCC-----------HHHHHH---HHhcCcccCeeeccCCC-CcHHHH---------HH----HHHh
Confidence 336888888877211 000000 12567889999999987 433200 00 0236
Q ss_pred cCCcceEeeccccccccccchhhhhhcccccEEEEcCC
Q 046345 1401 CKNLWDLEVSSCHELINLLTLSTSESLVNLRRMKIVDC 1438 (1462)
Q Consensus 1401 ~~~L~~l~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C 1438 (1462)
|++|+.|++++|+ ++.-....++..++.|....+...
T Consensus 512 l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 512 LPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 7888888888886 766655566777777777777665
No 50
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=6e-19 Score=224.79 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=13.4
Q ss_pred CCCCCCcEEEEeecccce
Q 046345 786 EGFPRLNRLQVKDCYEIL 803 (1462)
Q Consensus 786 ~~l~~L~~L~L~~~~~l~ 803 (1462)
..+++|++|.+.+++...
T Consensus 63 ~~~~~L~~L~L~~~~~~~ 80 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFA 80 (594)
T ss_dssp HHCTTCCEEEEECSCGGG
T ss_pred hhCCCceEEeccCCCchh
Confidence 357888888888876543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=195.03 Aligned_cols=170 Identities=21% Similarity=0.225 Sum_probs=107.0
Q ss_pred EEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEec
Q 046345 523 ISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLH 601 (1462)
Q Consensus 523 lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~ 601 (1462)
....++.+..+|... .++|++|++.+|. +..++...|.++++|++|++++|.++.+ |..|.++++|++|+++
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNR------ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCc------CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 444555666666532 2467777776665 4556655567777777777777777665 3456777777777777
Q ss_pred CcccCC-c-cccccccCCcEEEecCCCCCccch--hhccccccCEEccCCcccccccCccccccccccceeeccCccccc
Q 046345 602 WCELED-I-AIVGQLKKLEILSFRDSDIKELPL--EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQW 677 (1462)
Q Consensus 602 ~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 677 (1462)
+|.++. + ..++++++|++|++++|.++.+|. .+.++++|++|++++|..+..+++..++++++|++|++++|.+..
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 777666 3 336677777777777777776665 566677777777777655566655556677777777776665421
Q ss_pred ccccCCCccchHhhhcCCCCcEEEEEeecc
Q 046345 678 DKVEGGSNARLDELKELSKLTTLEIHVRDA 707 (1462)
Q Consensus 678 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 707 (1462)
..+..++.+++|++|+++.|.+
T Consensus 189 --------~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 189 --------YEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp --------ECTTTTTTCSEEEEEEEECSCS
T ss_pred --------cCHHHHhccccCCeecCCCCcc
Confidence 1234455566666666665543
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=3.2e-17 Score=191.15 Aligned_cols=288 Identities=14% Similarity=0.141 Sum_probs=200.7
Q ss_pred cEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEE
Q 046345 520 PIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTL 598 (1462)
Q Consensus 520 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L 598 (1462)
.+.+.+.++.+..+|... .+++++|++.+|. +..++...|.++++|++|++++|.++.+ |..|+.+++|++|
T Consensus 35 l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI-SPDTTLLDLQNND------ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred CCEEECCCCCccccCCCC-CCCCeEEECCCCc------CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 567888888888888754 5799999999887 5677777789999999999999999987 6789999999999
Q ss_pred EecCcccCC-ccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccc--cCccccccccccceeeccCcc
Q 046345 599 CLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEV--IAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 599 ~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
++++|.+.. |..+. .+|++|++++|.++.+|.. +.++++|++|++++| .+.. .++..+..+ +|++|++++|.
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCC
Confidence 999999988 55555 8999999999999988865 789999999999998 4542 444557777 99999999887
Q ss_pred cccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHH
Q 046345 675 SQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSIL 754 (1462)
Q Consensus 675 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 754 (1462)
+.... ..+ .++|++|++++|.+...+.. ....
T Consensus 184 l~~l~---------~~~--~~~L~~L~l~~n~i~~~~~~-------------------~l~~------------------ 215 (332)
T 2ft3_A 184 LTGIP---------KDL--PETLNELHLDHNKIQAIELE-------------------DLLR------------------ 215 (332)
T ss_dssp CSSCC---------SSS--CSSCSCCBCCSSCCCCCCTT-------------------SSTT------------------
T ss_pred CCccC---------ccc--cCCCCEEECCCCcCCccCHH-------------------HhcC------------------
Confidence 53211 111 25788888887776654421 0000
Q ss_pred HHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceeccccccccc
Q 046345 755 LWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLE 834 (1462)
Q Consensus 755 ~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 834 (1462)
+++|+.|++.++.-. .... ..+..+++|++|+++++. +..++. ....+++|+.|++++ +.++
T Consensus 216 ------l~~L~~L~L~~N~l~-~~~~--~~~~~l~~L~~L~L~~N~-l~~lp~-------~l~~l~~L~~L~l~~-N~l~ 277 (332)
T 2ft3_A 216 ------YSKLYRLGLGHNQIR-MIEN--GSLSFLPTLRELHLDNNK-LSRVPA-------GLPDLKLLQVVYLHT-NNIT 277 (332)
T ss_dssp ------CTTCSCCBCCSSCCC-CCCT--TGGGGCTTCCEEECCSSC-CCBCCT-------TGGGCTTCCEEECCS-SCCC
T ss_pred ------CCCCCEEECCCCcCC-cCCh--hHhhCCCCCCEEECCCCc-CeecCh-------hhhcCccCCEEECCC-CCCC
Confidence 134555555443221 1111 114467888888888764 334432 234578888888887 4566
Q ss_pred ccccccccCC---CcCCCcCEEEEecCCCCC-ccCCHHHHHHhccCCEEEEeccc
Q 046345 835 TICDSPLTED---HSFINLRIIKVKACEKLK-HLFSFSMAKNLLRLQKAEVDYCE 885 (1462)
Q Consensus 835 ~~~~~~~~~~---~~~~~L~~L~l~~c~~L~-~l~~~~~~~~L~~L~~L~l~~c~ 885 (1462)
.+....+... ..++.|+.|.+.+++-.. .+++ ..+..+++|+.++++++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCcccccccCc-ccccccchhhhhhccccc
Confidence 6654444321 126778999999887432 2333 456778899999888753
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.2e-18 Score=221.95 Aligned_cols=170 Identities=16% Similarity=0.149 Sum_probs=104.3
Q ss_pred ccccccceeecccccccccccccC--C---------CcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEeccc
Q 046345 915 AIFPRLEELELKRLANIDKLWPDQ--L---------QGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCE 983 (1462)
Q Consensus 915 ~~~~~L~~L~L~~~~~l~~~~~~~--~---------~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 983 (1462)
..||+|++|++.+++.+..+.... . .....+++|+.|++++|. ++.........++++|++|++++|.
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 467899999999987665432110 0 002357899999999986 4433223333478999999999997
Q ss_pred ccce--ecccCCCCCCcccccccccccccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCcceeeccccC
Q 046345 984 SMER--IVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIMLRFISTISS 1061 (1462)
Q Consensus 984 ~l~~--~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 1061 (1462)
.+.. ++. ....+++|++|++++|. ++....... ......+++|++|++++|. ..+...
T Consensus 142 ~~~~~~l~~------------~~~~~~~L~~L~L~~~~-i~~~~~~~l--~~~~~~~~~L~~L~l~~~~--~~~~~~--- 201 (594)
T 2p1m_B 142 GFSTDGLAA------------IAATCRNLKELDLRESD-VDDVSGHWL--SHFPDTYTSLVSLNISCLA--SEVSFS--- 201 (594)
T ss_dssp EEEHHHHHH------------HHHHCTTCCEEECTTCE-EECCCGGGG--GGSCTTCCCCCEEECTTCC--SCCCHH---
T ss_pred CCCHHHHHH------------HHHhCCCCCEEeCcCCc-cCCcchHHH--HHHhhcCCcCcEEEecccC--CcCCHH---
Confidence 6654 222 23478999999999886 333211100 0012357899999999885 111000
Q ss_pred CcccccccccccccccchhhccccCcccccccccccccccCCcEEEEecCCCcccccCcCcCCCCCccEEEEccc
Q 046345 1062 EDNAHTEMQTQPFFDEKLSIYYAINLTKILHHLLASESFSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFKLSYC 1136 (1462)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~l~i~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~C 1136 (1462)
.+..+ ...+++|+.|++.+|..++. ++..+..+++|+.|++++|
T Consensus 202 ------------------------~l~~l------~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 202 ------------------------ALERL------VTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp ------------------------HHHHH------HHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBC
T ss_pred ------------------------HHHHH------HHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccc
Confidence 00000 01247788888888866666 4555777788888876554
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=6.5e-17 Score=187.31 Aligned_cols=149 Identities=24% Similarity=0.414 Sum_probs=101.2
Q ss_pred cCcEEEEccCCCCccCCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCc
Q 046345 518 EDPIAISLPHRDIEVLPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQ 596 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr 596 (1462)
..++.+.+.++.+..+|.. ..+++|++|++.+|. +..+|.. |.++++|++|+|++|.++.+|..++++.+|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~------l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG------LMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC------CCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC------ccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 3567777777777776654 346777777777766 3455543 4677777777777777777777777777777
Q ss_pred EEEecCcccCC--ccccc---------cccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCcccccccccc
Q 046345 597 TLCLHWCELED--IAIVG---------QLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRL 665 (1462)
Q Consensus 597 ~L~L~~~~l~~--~~~i~---------~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L 665 (1462)
+|++++|.+.. |..++ ++++|++|++++|.++.+|..++++++|++|++++| .+..+|+. ++++++|
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L 231 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHLPKL 231 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-hccCCCC
Confidence 77777765433 44443 377777777777777777777777777777777776 56666665 6777777
Q ss_pred ceeeccCccc
Q 046345 666 EELYMGGSFS 675 (1462)
Q Consensus 666 ~~L~l~~~~~ 675 (1462)
++|++++|..
T Consensus 232 ~~L~Ls~n~~ 241 (328)
T 4fcg_A 232 EELDLRGCTA 241 (328)
T ss_dssp CEEECTTCTT
T ss_pred CEEECcCCcc
Confidence 7777766554
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=7.4e-17 Score=185.72 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=103.2
Q ss_pred CcEEEEccCCCCc---cCCcc-CCCCcceEEEEee-cCCCCCccccccChhhhhcCCcceEEEecCCCCC-CCCcccCCC
Q 046345 519 DPIAISLPHRDIE---VLPER-LQCPRLDLFLLFT-KGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFS-SLPSSLGRL 592 (1462)
Q Consensus 519 ~~r~lsl~~~~~~---~l~~~-~~~~~Lr~L~l~~-~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~L 592 (1462)
.++++.+.++.+. .+|.. ..+++|++|++.+ +.. ...+|.. |.++++|++|++++|.+. .+|..|..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-----~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-----VGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-----ESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-----cccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 4666666666665 24433 3566677777664 432 2234433 566667777777776665 556666666
Q ss_pred CcCcEEEecCcccCC--ccccccccCCcEEEecCCCCC-ccchhhcccc-ccCEEccCCcccccccCcccccccccccee
Q 046345 593 TSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIK-ELPLEIGLLT-RLSLLDLSDCWSLEVIAPNVISKLSRLEEL 668 (1462)
Q Consensus 593 ~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~-~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L 668 (1462)
++|++|++++|.+.. |..++++++|++|++++|.++ .+|..++.++ +|++|++++| .+....+..++.++ |++|
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEE
Confidence 777777777766663 566666677777777766666 6666666666 6677777666 34432223356665 6666
Q ss_pred eccCcccccccccCCCccchHhhhcCCCCcEEEEEeecc
Q 046345 669 YMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDA 707 (1462)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 707 (1462)
++++|.+.. ..+..+..+++|+.|+++.|.+
T Consensus 203 ~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 203 DLSRNMLEG--------DASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSEEEE--------CCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccC--------cCCHHHhcCCCCCEEECCCCce
Confidence 666665421 2234455666666666665544
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=1.4e-16 Score=185.69 Aligned_cols=288 Identities=15% Similarity=0.147 Sum_probs=189.5
Q ss_pred cEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEE
Q 046345 520 PIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTL 598 (1462)
Q Consensus 520 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L 598 (1462)
.+.+.+.++.+..+|... .+++++|++.+|. +..++...|.++++|++|++++|.++.+ |..|+.+++|++|
T Consensus 33 l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDL-PPDTALLDLQNNK------ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp TTEEECTTSCCCSCCCSC-CTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CeEEEecCCCccccCccC-CCCCeEEECCCCc------CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 566777777788777643 4789999998887 5677777789999999999999999887 7789999999999
Q ss_pred EecCcccCC-ccccccccCCcEEEecCCCCCccch-hhccccccCEEccCCcccccc--cCccccccccccceeeccCcc
Q 046345 599 CLHWCELED-IAIVGQLKKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEV--IAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 599 ~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
++++|.++. |..+. .+|++|++++|.++.+|. .+.++++|++|++++| .+.. ..+..+.++++|++|++++|.
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCc
Confidence 999999887 55554 789999999999988765 4788999999999987 4432 444558889999999998886
Q ss_pred cccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHH
Q 046345 675 SQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSIL 754 (1462)
Q Consensus 675 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 754 (1462)
+.... ..+ .++|++|+++.|.+...+.. +...
T Consensus 183 l~~l~---------~~~--~~~L~~L~l~~n~l~~~~~~-------------------~~~~------------------ 214 (330)
T 1xku_A 183 ITTIP---------QGL--PPSLTELHLDGNKITKVDAA-------------------SLKG------------------ 214 (330)
T ss_dssp CCSCC---------SSC--CTTCSEEECTTSCCCEECTG-------------------GGTT------------------
T ss_pred cccCC---------ccc--cccCCEEECCCCcCCccCHH-------------------HhcC------------------
Confidence 53211 111 26788888887766543221 0001
Q ss_pred HHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceeccccccccc
Q 046345 755 LWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLE 834 (1462)
Q Consensus 755 ~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 834 (1462)
+++|+.|++.++.-...... .+..+++|++|+++++. +..++. ....+++|+.|++.+ ..++
T Consensus 215 ------l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~-l~~lp~-------~l~~l~~L~~L~l~~-N~i~ 276 (330)
T 1xku_A 215 ------LNNLAKLGLSFNSISAVDNG---SLANTPHLRELHLNNNK-LVKVPG-------GLADHKYIQVVYLHN-NNIS 276 (330)
T ss_dssp ------CTTCCEEECCSSCCCEECTT---TGGGSTTCCEEECCSSC-CSSCCT-------TTTTCSSCCEEECCS-SCCC
T ss_pred ------CCCCCEEECCCCcCceeChh---hccCCCCCCEEECCCCc-CccCCh-------hhccCCCcCEEECCC-CcCC
Confidence 13344444443321111111 13456777777777653 333321 224567777777776 3566
Q ss_pred ccccccccCC---CcCCCcCEEEEecCCCCC-ccCCHHHHHHhccCCEEEEecc
Q 046345 835 TICDSPLTED---HSFINLRIIKVKACEKLK-HLFSFSMAKNLLRLQKAEVDYC 884 (1462)
Q Consensus 835 ~~~~~~~~~~---~~~~~L~~L~l~~c~~L~-~l~~~~~~~~L~~L~~L~l~~c 884 (1462)
.+....+... ..++.|+.|.+.+++--. .+++ ..+..+++|+.++++++
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred ccChhhcCCcccccccccccceEeecCcccccccCc-cccccccceeEEEeccc
Confidence 5554433221 135678888888776422 2222 35567778888888764
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=1.1e-18 Score=214.64 Aligned_cols=158 Identities=19% Similarity=0.158 Sum_probs=115.6
Q ss_pred CcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCC-----CCCcccCCCCcCcEEEecCcccCC--ccccc
Q 046345 540 PRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFS-----SLPSSLGRLTSLQTLCLHWCELED--IAIVG 612 (1462)
Q Consensus 540 ~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~ 612 (1462)
+++++|++.++.. .......+|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.. +..+.
T Consensus 3 ~~l~~L~Ls~~~l-----~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEEL-----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCCC-----CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhhhccc-----CchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 5788899987763 12223445788999999999999987 467788899999999999999876 43333
Q ss_pred -ccc----CCcEEEecCCCCC-----ccchhhccccccCEEccCCcccccccCcccc-----ccccccceeeccCccccc
Q 046345 613 -QLK----KLEILSFRDSDIK-----ELPLEIGLLTRLSLLDLSDCWSLEVIAPNVI-----SKLSRLEELYMGGSFSQW 677 (1462)
Q Consensus 613 -~L~----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l-----~~L~~L~~L~l~~~~~~~ 677 (1462)
.+. +|++|++++|.++ .+|..+.++++|++|++++|. +.......+ ...++|++|++++|.+..
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 355 6999999999888 468888999999999999984 543322212 235679999999886532
Q ss_pred ccccCCCccchHhhhcCCCCcEEEEEeecc
Q 046345 678 DKVEGGSNARLDELKELSKLTTLEIHVRDA 707 (1462)
Q Consensus 678 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 707 (1462)
.. .......+..+++|++|++++|.+
T Consensus 157 ~~----~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 157 AS----CEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp GG----HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HH----HHHHHHHHhhCCCCCEEECcCCCc
Confidence 11 112345667788999998886654
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=191.89 Aligned_cols=169 Identities=21% Similarity=0.258 Sum_probs=119.8
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLC 599 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~ 599 (1462)
+.+...+..+..+|... .++++.|++.+|. +..++...|.++++|++|+|++|.+..++ ..|..+.+|++|+
T Consensus 46 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGI-STNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp CEEECCSCCCSSCCSCC-CTTCSEEECCSCC------CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEEccCCc------CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 45666666677777543 3677888887776 56666666788888888888888887765 5677888888888
Q ss_pred ecCcccCC-c-cccccccCCcEEEecCCCCCccch-hhccccccCEEccCCcccccccCccccccccccceeeccCcccc
Q 046345 600 LHWCELED-I-AIVGQLKKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQ 676 (1462)
Q Consensus 600 L~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 676 (1462)
|++|.++. + ..|.++.+|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 88888777 3 467788888888888888877765 56778888888888776777777766778888888888777552
Q ss_pred cccccCCCccchHhhhcCCCCcEEEEEeec
Q 046345 677 WDKVEGGSNARLDELKELSKLTTLEIHVRD 706 (1462)
Q Consensus 677 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 706 (1462)
. +..+..+++|+.|+++.|.
T Consensus 199 ~----------~~~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 199 E----------IPNLTPLIKLDELDLSGNH 218 (440)
T ss_dssp S----------CCCCTTCSSCCEEECTTSC
T ss_pred c----------ccccCCCcccCEEECCCCc
Confidence 1 1234555666666665443
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=1.9e-16 Score=193.26 Aligned_cols=170 Identities=22% Similarity=0.226 Sum_probs=125.5
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLC 599 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~ 599 (1462)
+.+...+..+..+|... .+++++|++.+|. +..++...|.++++|++|+|++|.+..++ ..|..+.+|++|+
T Consensus 57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENN------IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp CEEECCSSCCSSCCSCC-CTTCSEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEECCCCcCccCCCC-CCCccEEECcCCc------CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 45666666677777533 3678888888776 56666666788888888888888888764 5788888888888
Q ss_pred ecCcccCC--ccccccccCCcEEEecCCCCCccch-hhccccccCEEccCCcccccccCccccccccccceeeccCcccc
Q 046345 600 LHWCELED--IAIVGQLKKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQ 676 (1462)
Q Consensus 600 L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 676 (1462)
|++|.++. +..+.++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 88888877 3457788888888888888887765 56788888888888877788887777888888888888877652
Q ss_pred cccccCCCccchHhhhcCCCCcEEEEEeecc
Q 046345 677 WDKVEGGSNARLDELKELSKLTTLEIHVRDA 707 (1462)
Q Consensus 677 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 707 (1462)
. +..+..+++|+.|+++.|.+
T Consensus 210 ~----------~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 210 D----------MPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp S----------CCCCTTCTTCCEEECTTSCC
T ss_pred c----------cccccccccccEEECcCCcC
Confidence 1 12355666666666665543
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=9.6e-16 Score=190.86 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=56.6
Q ss_pred cceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCCcEE
Q 046345 541 RLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEIL 620 (1462)
Q Consensus 541 ~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L 620 (1462)
++++|++.++. +..+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.++..+. .+++|++|
T Consensus 41 ~l~~L~ls~n~------L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESG------LTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSC------CSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEE
T ss_pred CCcEEEecCCC------cCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEE
Confidence 35555555544 344444332 455555555555555554 34555555555555555222 44555555
Q ss_pred EecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCc
Q 046345 621 SFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGS 673 (1462)
Q Consensus 621 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 673 (1462)
++++|+++.+|. .+++|++|++++| .+..+|.. +++|++|++++|
T Consensus 107 ~Ls~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N 151 (622)
T 3g06_A 107 SIFSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDN 151 (622)
T ss_dssp EECSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSS
T ss_pred ECcCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCC
Confidence 555555555554 4455555555554 34444432 245555555444
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.67 E-value=1.3e-16 Score=183.58 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=124.0
Q ss_pred CcceEEEEeecCCCCCcccc--ccChhhhhcCCcceEEEecC-CCCC-CCCcccCCCCcCcEEEecCcccCC--cccccc
Q 046345 540 PRLDLFLLFTKGDGSFPISM--QMSDLFFEGTEGLKVLDFTG-IHFS-SLPSSLGRLTSLQTLCLHWCELED--IAIVGQ 613 (1462)
Q Consensus 540 ~~Lr~L~l~~~~~~~~~~~~--~l~~~~f~~l~~Lr~L~Ls~-~~i~-~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~ 613 (1462)
.+++.|++.++.. .. .+|.. |.++++|++|++++ |.+. .+|..|+++++|++|++++|.+.. |..+++
T Consensus 50 ~~l~~L~L~~~~l-----~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNL-----PKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCC-----SSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCc-----cCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 5799999998874 22 46654 78999999999995 7776 689999999999999999999974 788999
Q ss_pred ccCCcEEEecCCCCC-ccchhhccccccCEEccCCccccc-ccCcccccccc-ccceeeccCcccccccccCCCccchHh
Q 046345 614 LKKLEILSFRDSDIK-ELPLEIGLLTRLSLLDLSDCWSLE-VIAPNVISKLS-RLEELYMGGSFSQWDKVEGGSNARLDE 690 (1462)
Q Consensus 614 L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~-~~p~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~ 690 (1462)
+++|++|++++|.++ .+|..++++++|++|++++| .+. .+|.. ++++. +|++|++++|.+. +..+..
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~--------~~~~~~ 193 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLT--------GKIPPT 193 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEE--------EECCGG
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeee--------ccCChH
Confidence 999999999999988 78899999999999999998 565 56655 88888 9999999988763 223455
Q ss_pred hhcCCCCcEEEEEeeccc
Q 046345 691 LKELSKLTTLEIHVRDAE 708 (1462)
Q Consensus 691 L~~l~~L~~L~l~~~~~~ 708 (1462)
+..++ |+.|+++.|.+.
T Consensus 194 ~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp GGGCC-CSEEECCSSEEE
T ss_pred HhCCc-ccEEECcCCccc
Confidence 66666 888888766543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=2.9e-16 Score=191.59 Aligned_cols=152 Identities=15% Similarity=0.193 Sum_probs=122.0
Q ss_pred ceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEecCcccCC--ccccccccCCc
Q 046345 542 LDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLE 618 (1462)
Q Consensus 542 Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~ 618 (1462)
.+.++..+.. +..+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++|.+.. +..|.++.+|+
T Consensus 56 ~~~v~c~~~~------l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRG------LSEVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp SCEEECCSSC------CSSCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CcEEEECCCC------cCccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC
Confidence 3455554443 567776543 6899999999999987 5689999999999999999988 57899999999
Q ss_pred EEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCC
Q 046345 619 ILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKL 697 (1462)
Q Consensus 619 ~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L 697 (1462)
+|+|++|.++.+|.. +..+++|++|++++| .+..+|...+.++++|++|+++++..... .....+..+++|
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-------i~~~~~~~l~~L 198 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEY-------ISEGAFEGLFNL 198 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE-------ECTTTTTTCTTC
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccc-------cChhhccCCCCC
Confidence 999999999999875 788999999999998 68889887799999999999988543211 112356778888
Q ss_pred cEEEEEeecccCC
Q 046345 698 TTLEIHVRDAEIL 710 (1462)
Q Consensus 698 ~~L~l~~~~~~~~ 710 (1462)
+.|+++.|.+..+
T Consensus 199 ~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 199 KYLNLGMCNIKDM 211 (452)
T ss_dssp CEEECTTSCCSSC
T ss_pred CEEECCCCccccc
Confidence 8888877665443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=1.2e-15 Score=190.14 Aligned_cols=256 Identities=16% Similarity=0.125 Sum_probs=194.0
Q ss_pred cCcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 518 EDPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
..++.+.+.++.+..+|.... ++|++|++.+|. +..+|. .+++|++|+|++|.++.+|. .+++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~------l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNN------LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCC------CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCE
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCC------CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCE
Confidence 358899999999999988654 899999999987 566775 57899999999999999997 7899999
Q ss_pred EEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCccccc
Q 046345 598 LCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQW 677 (1462)
Q Consensus 598 L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 677 (1462)
|++++|.++..+. .+.+|++|++++|+++.+|.. +++|++|++++| .+..+|.. +.+|+.|++++|.+..
T Consensus 106 L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~----~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 106 LSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS 175 (622)
T ss_dssp EEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSC
T ss_pred EECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc----cCCCCEEECCCCCCCC
Confidence 9999999998433 678999999999999999974 589999999998 67777653 5789999999887632
Q ss_pred ccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHH
Q 046345 678 DKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWM 757 (1462)
Q Consensus 678 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 757 (1462)
. . ..+++|+.|+++.|.+..++.. .
T Consensus 176 l----------~--~~~~~L~~L~Ls~N~l~~l~~~--~----------------------------------------- 200 (622)
T 3g06_A 176 L----------P--MLPSGLQELSVSDNQLASLPTL--P----------------------------------------- 200 (622)
T ss_dssp C----------C--CCCTTCCEEECCSSCCSCCCCC--C-----------------------------------------
T ss_pred C----------c--ccCCCCcEEECCCCCCCCCCCc--c-----------------------------------------
Confidence 1 1 3468899999998877655431 1
Q ss_pred HHHhccccceEeccccCcccccccccCCCCCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccccccccc
Q 046345 758 KLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETIC 837 (1462)
Q Consensus 758 ~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 837 (1462)
++|+.|++.++. +..+ + ..+++|++|+++++. +..++ ..+++|+.|+++++ .++.++
T Consensus 201 ----~~L~~L~L~~N~-l~~l----~--~~~~~L~~L~Ls~N~-L~~lp----------~~l~~L~~L~Ls~N-~L~~lp 257 (622)
T 3g06_A 201 ----SELYKLWAYNNR-LTSL----P--ALPSGLKELIVSGNR-LTSLP----------VLPSELKELMVSGN-RLTSLP 257 (622)
T ss_dssp ----TTCCEEECCSSC-CSSC----C--CCCTTCCEEECCSSC-CSCCC----------CCCTTCCEEECCSS-CCSCCC
T ss_pred ----chhhEEECcCCc-cccc----C--CCCCCCCEEEccCCc-cCcCC----------CCCCcCcEEECCCC-CCCcCC
Confidence 334445544332 1111 1 135788888888763 33322 34678899988884 566554
Q ss_pred cccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccCCEEEEeccc
Q 046345 838 DSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRLQKAEVDYCE 885 (1462)
Q Consensus 838 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~~L~l~~c~ 885 (1462)
. .+++|+.|++++| ++..+|. .+.++++|+.|++++++
T Consensus 258 ~-------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 258 M-------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp C-------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred c-------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 2 4688999999887 6777764 57789999999999875
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=4.3e-16 Score=189.28 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=122.5
Q ss_pred ceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEEecCcccCC--ccccccccCCc
Q 046345 542 LDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLHWCELED--IAIVGQLKKLE 618 (1462)
Q Consensus 542 Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~ 618 (1462)
.+.++..+.. +..+|..++ +++++|+|++|.++.++ ..|.++++|++|+|++|.+.. +..|.++.+|+
T Consensus 45 ~~~v~c~~~~------l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKN------LREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCC------CSSCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred CCEEEeCCCC------cCcCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCC
Confidence 4455555444 677887653 67899999999999875 689999999999999999987 57899999999
Q ss_pred EEEecCCCCCccch-hhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCC
Q 046345 619 ILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKL 697 (1462)
Q Consensus 619 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L 697 (1462)
+|+|++|.++.+|. .+..+++|++|++++| .+..++...+.++++|++|+++++..... .....+..+++|
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-------i~~~~~~~l~~L 187 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSY-------ISEGAFEGLSNL 187 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE-------ECTTTTTTCSSC
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcce-------eCcchhhccccc
Confidence 99999999999987 5889999999999998 68888887799999999999988543211 122356778888
Q ss_pred cEEEEEeecccCC
Q 046345 698 TTLEIHVRDAEIL 710 (1462)
Q Consensus 698 ~~L~l~~~~~~~~ 710 (1462)
+.|+++.|.+..+
T Consensus 188 ~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 188 RYLNLAMCNLREI 200 (440)
T ss_dssp CEEECTTSCCSSC
T ss_pred CeecCCCCcCccc
Confidence 8888877665543
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=1.5e-16 Score=183.19 Aligned_cols=174 Identities=25% Similarity=0.215 Sum_probs=135.1
Q ss_pred EEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC---CcccCCCCcCcEE
Q 046345 522 AISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL---PSSLGRLTSLQTL 598 (1462)
Q Consensus 522 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l---p~~i~~L~~Lr~L 598 (1462)
++...++.+..+|... .++++.|++.++. +..+|..+|.++++|++|++++|.++.+ |..+..+.+|++|
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNK------LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSC------CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCc------cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 4666667777777643 3688899988887 5678888888899999999999988755 5677788899999
Q ss_pred EecCcccCC-ccccccccCCcEEEecCCCCCccch--hhccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 599 CLHWCELED-IAIVGQLKKLEILSFRDSDIKELPL--EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 599 ~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
++++|.+.. +..+.++++|++|++++|.++.+|. .+..+++|++|++++| .+...++..++++++|++|++++|.+
T Consensus 84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 84 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcc
Confidence 999998887 6778889999999999988887764 6788899999999887 56666666688889999999888765
Q ss_pred ccccccCCCccchHhhhcCCCCcEEEEEeecccCC
Q 046345 676 QWDKVEGGSNARLDELKELSKLTTLEIHVRDAEIL 710 (1462)
Q Consensus 676 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 710 (1462)
.. ...+..+..+++|+.|+++.|.+...
T Consensus 163 ~~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 163 QE-------NFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp GG-------GEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred cc-------ccchhHHhhCcCCCEEECCCCCcCCc
Confidence 21 12334567788888888887766544
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=181.15 Aligned_cols=179 Identities=20% Similarity=0.242 Sum_probs=151.7
Q ss_pred cCcEEEEccCCCCccCCc--cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcc-cCCCCc
Q 046345 518 EDPIAISLPHRDIEVLPE--RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSS-LGRLTS 594 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~ 594 (1462)
..++++.+.++.+..++. ...+++|++|++.+|. +..++...|.++++|++|++++|.++.+|.. ++.+++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc------cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 368999999999998876 4679999999999887 5677777789999999999999999999876 899999
Q ss_pred CcEEEecCcccCC-cc--ccccccCCcEEEecCC-CCCccc-hhhccccccCEEccCCcccccccCccccccccccceee
Q 046345 595 LQTLCLHWCELED-IA--IVGQLKKLEILSFRDS-DIKELP-LEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELY 669 (1462)
Q Consensus 595 Lr~L~L~~~~l~~-~~--~i~~L~~L~~L~L~~~-~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~ 669 (1462)
|++|++++|.++. +. .+.++++|++|++++| .+..++ ..++++++|++|++++| .+..+++..++++++|++|+
T Consensus 126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEE
T ss_pred CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeec
Confidence 9999999999988 43 6899999999999999 577774 57899999999999998 57777666699999999999
Q ss_pred ccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCC
Q 046345 670 MGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILP 711 (1462)
Q Consensus 670 l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 711 (1462)
+++|.... .....+..+++|+.|+++.|.+...+
T Consensus 205 l~~n~l~~--------~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 205 LHMKQHIL--------LLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp EECSCSTT--------HHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred CCCCcccc--------chhhhhhhcccccEEECCCCcccccc
Confidence 99887521 11233556899999999998876654
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=9.9e-16 Score=176.42 Aligned_cols=146 Identities=19% Similarity=0.154 Sum_probs=116.8
Q ss_pred EEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcc-cCCCCcCcEEEecCcccCC----ccccccccCCc
Q 046345 544 LFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSS-LGRLTSLQTLCLHWCELED----IAIVGQLKKLE 618 (1462)
Q Consensus 544 ~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~~~~l~~----~~~i~~L~~L~ 618 (1462)
.++..++. +..+|..++ ++|++|++++|.++.+|.. +.++++|++|++++|.+.. +..+..+.+|+
T Consensus 11 ~l~c~~~~------l~~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 11 EIRCNSKG------LTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp EEECCSSC------CSSCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred EEEcCCCC------cccCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 45555444 567776543 6799999999999999875 7899999999999999875 46777899999
Q ss_pred EEEecCCCCCccchhhccccccCEEccCCcccccccCc-cccccccccceeeccCcccccccccCCCccchHhhhcCCCC
Q 046345 619 ILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAP-NVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKL 697 (1462)
Q Consensus 619 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L 697 (1462)
+|++++|.+..+|..+..+++|++|++++| .+..++. ..+.++++|++|++++|.... .....+..+++|
T Consensus 82 ~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L 152 (306)
T 2z66_A 82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV--------AFNGIFNGLSSL 152 (306)
T ss_dssp EEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEE--------CSTTTTTTCTTC
T ss_pred EEECCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCc--------cchhhcccCcCC
Confidence 999999999999999999999999999998 6777765 458899999999999886532 223456778888
Q ss_pred cEEEEEeecc
Q 046345 698 TTLEIHVRDA 707 (1462)
Q Consensus 698 ~~L~l~~~~~ 707 (1462)
++|+++.|.+
T Consensus 153 ~~L~l~~n~l 162 (306)
T 2z66_A 153 EVLKMAGNSF 162 (306)
T ss_dssp CEEECTTCEE
T ss_pred CEEECCCCcc
Confidence 8888876644
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=2.6e-15 Score=170.75 Aligned_cols=174 Identities=19% Similarity=0.254 Sum_probs=133.3
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLC 599 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~ 599 (1462)
+.+...++.+..+|.. ..++++.|++.++. +..++...|..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNR------ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCc------CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 5566677777777753 35688888888876 5667777788888888888888888876 66788888888888
Q ss_pred ecCcc-cCC--ccccccccCCcEEEecCCCCCcc-chhhccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 600 LHWCE-LED--IAIVGQLKKLEILSFRDSDIKEL-PLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 600 L~~~~-l~~--~~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
+++|. +.. +..+.++++|++|++++|.++.+ |..+.++++|++|++++| .+..+++..++++++|++|++++|.+
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcc
Confidence 88886 666 56788888888888888888877 455778888888888887 67777776678888888888888765
Q ss_pred ccccccCCCccchHhhhcCCCCcEEEEEeecccCC
Q 046345 676 QWDKVEGGSNARLDELKELSKLTTLEIHVRDAEIL 710 (1462)
Q Consensus 676 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 710 (1462)
.. .....+..+++|+.|+++.|.+...
T Consensus 166 ~~--------~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 166 SS--------VPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp CE--------ECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cc--------cCHHHhcCccccCEEECCCCccccc
Confidence 31 1123467788888888887765543
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=5.8e-15 Score=169.34 Aligned_cols=186 Identities=15% Similarity=0.195 Sum_probs=156.0
Q ss_pred CcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEE
Q 046345 519 DPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTL 598 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L 598 (1462)
.++++.+.++.+..++....+++|++|++.+|. +..++. |..+++|++|++++|.++.+| .+..+.+|++|
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~------i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ------ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC------CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCc------CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 588899999999888877789999999999887 456665 789999999999999998886 68999999999
Q ss_pred EecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccc
Q 046345 599 CLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWD 678 (1462)
Q Consensus 599 ~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 678 (1462)
++++|.++..+.+..+++|++|++++|.++.+|. ++.+++|++|++++| .+..+++ +.++++|++|++++|.+.
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~-- 186 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKIS-- 186 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccC--
Confidence 9999999886669999999999999999998876 889999999999998 6777766 889999999999988763
Q ss_pred cccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEc
Q 046345 679 KVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIG 727 (1462)
Q Consensus 679 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~ 727 (1462)
.+..+..+++|+.|+++.|.+...++...+.+|+.|.+..+
T Consensus 187 --------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 187 --------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp --------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred --------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 12237889999999999988887775556677777776543
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=3.5e-15 Score=169.71 Aligned_cols=192 Identities=22% Similarity=0.342 Sum_probs=163.1
Q ss_pred cCcEEEEccCCCCccCCc--cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCC-CCCC-CcccCCCC
Q 046345 518 EDPIAISLPHRDIEVLPE--RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIH-FSSL-PSSLGRLT 593 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~-i~~l-p~~i~~L~ 593 (1462)
..++++.+.++.+..++. ...+++|++|++.+|. +..++...|.++++|++|++++|. +..+ |..+..++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc------cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 468999999999988775 3578999999999887 566766678999999999999997 8888 67899999
Q ss_pred cCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeec
Q 046345 594 SLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYM 670 (1462)
Q Consensus 594 ~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l 670 (1462)
+|++|++++|.+.. +..+.++++|++|++++|.++.+|.. ++++++|++|++++| .+..+++..+.++++|++|++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEEC
Confidence 99999999999988 57799999999999999999988865 789999999999998 788888877999999999999
Q ss_pred cCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCcc--ccccccceeEE
Q 046345 671 GGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD--LVFMELERYRI 724 (1462)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i 724 (1462)
++|.+.. ..+..+..+++|+.|+++.|.+..++.. ..+.+|+.+.+
T Consensus 185 ~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 185 HQNRVAH--------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CSSCCCE--------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred CCCcccc--------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 9987632 2346788899999999999988877654 34455555544
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=6.3e-16 Score=178.58 Aligned_cols=88 Identities=16% Similarity=0.082 Sum_probs=51.6
Q ss_pred CCCCCcEEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCC
Q 046345 787 GFPRLNRLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFS 866 (1462)
Q Consensus 787 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 866 (1462)
.+++|++|+++++. +..++. ....+++|+.|+++++ .++.++.. + ..+++|+.|++++++-.....
T Consensus 189 ~l~~L~~L~Ls~N~-l~~l~~-------~~~~l~~L~~L~L~~N-~l~~l~~~-~---~~l~~L~~L~l~~N~~~~~~~- 254 (317)
T 3o53_A 189 VFAKLKTLDLSSNK-LAFMGP-------EFQSAAGVTWISLRNN-KLVLIEKA-L---RFSQNLEHFDLRGNGFHCGTL- 254 (317)
T ss_dssp CCTTCCEEECCSSC-CCEECG-------GGGGGTTCSEEECTTS-CCCEECTT-C---CCCTTCCEEECTTCCCBHHHH-
T ss_pred ccccCCEEECCCCc-CCcchh-------hhcccCcccEEECcCC-cccchhhH-h---hcCCCCCEEEccCCCccCcCH-
Confidence 46677777777653 333322 1234577777777773 55554322 1 457788888888765431211
Q ss_pred HHHHHHhccCCEEEEecccCcc
Q 046345 867 FSMAKNLLRLQKAEVDYCENLE 888 (1462)
Q Consensus 867 ~~~~~~L~~L~~L~l~~c~~l~ 888 (1462)
...+..++.|+.+++.++..+.
T Consensus 255 ~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccceEEECCCchhcc
Confidence 1355677777777777665544
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=8.1e-15 Score=164.98 Aligned_cols=189 Identities=20% Similarity=0.308 Sum_probs=148.2
Q ss_pred cEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcc-cCCCCcCcEE
Q 046345 520 PIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSS-LGRLTSLQTL 598 (1462)
Q Consensus 520 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L 598 (1462)
.+.+...++.+..+|... .++++.|++.++. +..++...|.++++|++|++++|.++.+|.. +..+++|++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNK------LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSC------CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCC------CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 567888888888887643 3688999998887 5677777788899999999999999888764 5889999999
Q ss_pred EecCcccCC--ccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 599 CLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 599 ~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
++++|.+.. +..+.++.+|++|++++|.++.+|.. ++.+++|++|++++| .+..+|+..++++++|++|++++|.+
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcC
Confidence 999999887 35678899999999999998887654 678999999999997 68888877788899999999988865
Q ss_pred ccccccCCCccchHhhhcCCCCcEEEEEeecccCCCcc--ccccccceeEE
Q 046345 676 QWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD--LVFMELERYRI 724 (1462)
Q Consensus 676 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i 724 (1462)
... ....+..+++|+.|+++.|.+..++.. ..+.+|+.+.+
T Consensus 170 ~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 170 KRV--------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp SCC--------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cEe--------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 321 223467788999999998888776654 23445555544
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=6.3e-15 Score=167.08 Aligned_cols=189 Identities=20% Similarity=0.217 Sum_probs=157.2
Q ss_pred CcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEE
Q 046345 519 DPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTL 598 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L 598 (1462)
..+.+.+.++.+..+|... .++++.|++.+|. +..++...|.++++|++|+|++|.++.+|.. +.+++|++|
T Consensus 11 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSENL------LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSC------CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred CccEEECCCCCCCcCCCCC-CCCCCEEEcCCCc------CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 4678888999999888754 3789999999887 5667777789999999999999999988765 889999999
Q ss_pred EecCcccCC-ccccccccCCcEEEecCCCCCccch-hhccccccCEEccCCcccccccCccccccccccceeeccCcccc
Q 046345 599 CLHWCELED-IAIVGQLKKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQ 676 (1462)
Q Consensus 599 ~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 676 (1462)
++++|.+.. |..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..+|+..+.++++|++|++++|.+.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCC
Confidence 999999988 7788999999999999999998874 5889999999999998 788888887899999999999998764
Q ss_pred cccccCCCccchHhhhcCCCCcEEEEEeecccCCCcc-ccccccceeEE
Q 046345 677 WDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD-LVFMELERYRI 724 (1462)
Q Consensus 677 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~i 724 (1462)
.. ....+..+++|+.|+++.|.+..+|.. ....+|+.+.+
T Consensus 162 ~l--------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 162 EL--------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp CC--------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred cc--------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 21 123467789999999999998877765 33344555443
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.3e-14 Score=163.21 Aligned_cols=176 Identities=22% Similarity=0.299 Sum_probs=153.5
Q ss_pred cCcEEEEccCCCCccCCc--cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCc
Q 046345 518 EDPIAISLPHRDIEVLPE--RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTS 594 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~ 594 (1462)
..++++.+.++.+..++. ...+++|++|++.+|. +..++..+|.++++|++|++++|.+..+|. .+..+.+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK------LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC------CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSS
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc------cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccC
Confidence 468999999999998885 3578999999999887 578888889999999999999999999875 5799999
Q ss_pred CcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeecc
Q 046345 595 LQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMG 671 (1462)
Q Consensus 595 Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 671 (1462)
|++|++++|.+.. +..+.++++|++|++++|.++.+|.. +..+++|++|++++| .+..+++..+.++++|++|+++
T Consensus 111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECC
Confidence 9999999999988 46689999999999999999999876 789999999999998 7888888778999999999999
Q ss_pred CcccccccccCCCccchHhhhcCCCCcEEEEEeeccc
Q 046345 672 GSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAE 708 (1462)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 708 (1462)
+|.+... ....+..+++|+.|+++.|...
T Consensus 190 ~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 190 NNQLKRV--------PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SSCCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCCcC--------CHHHhccccCCCEEEecCCCee
Confidence 9876321 2235678899999999988643
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=3.8e-16 Score=180.39 Aligned_cols=255 Identities=15% Similarity=0.160 Sum_probs=167.5
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCccchhhcc
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGL 636 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~ 636 (1462)
+...+..++..+++|++|+|++|.++.++ ..|..+++|++|+|++|.+.....+..+++|++|++++|.++.+| .
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~ 97 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----V 97 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----E
T ss_pred hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----C
Confidence 45556677778888999999999998875 578899999999999998887444888999999999999888776 3
Q ss_pred ccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccc
Q 046345 637 LTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVF 716 (1462)
Q Consensus 637 L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~ 716 (1462)
.++|++|++++| .+..++.. .+++|++|++++|.+... ....++.+++|+.|+++.|.+...+
T Consensus 98 ~~~L~~L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~----- 160 (317)
T 3o53_A 98 GPSIETLHAANN-NISRVSCS---RGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLNEIDTVN----- 160 (317)
T ss_dssp CTTCCEEECCSS-CCSEEEEC---CCSSCEEEECCSSCCCSG--------GGBCTGGGSSEEEEECTTSCCCEEE-----
T ss_pred CCCcCEEECCCC-ccCCcCcc---ccCCCCEEECCCCCCCCc--------cchhhhccCCCCEEECCCCCCCccc-----
Confidence 488999999987 56666654 367788888888765321 1123455666666666544332110
Q ss_pred cccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCcEEEE
Q 046345 717 MELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLNRLQV 796 (1462)
Q Consensus 717 ~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~~L~L 796 (1462)
...+ ...+++|++|++
T Consensus 161 --------------------------------------------------------------~~~~--~~~l~~L~~L~L 176 (317)
T 3o53_A 161 --------------------------------------------------------------FAEL--AASSDTLEHLNL 176 (317)
T ss_dssp --------------------------------------------------------------GGGG--GGGTTTCCEEEC
T ss_pred --------------------------------------------------------------HHHH--hhccCcCCEEEC
Confidence 0010 124677888888
Q ss_pred eecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHHhccC
Q 046345 797 KDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKNLLRL 876 (1462)
Q Consensus 797 ~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~L~~L 876 (1462)
+++. +..++ ....+++|+.|+++++ .++.++.. + ..+++|+.|++++| .+..+|. .+..+++|
T Consensus 177 ~~N~-l~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~-~---~~l~~L~~L~L~~N-~l~~l~~--~~~~l~~L 239 (317)
T 3o53_A 177 QYNF-IYDVK--------GQVVFAKLKTLDLSSN-KLAFMGPE-F---QSAAGVTWISLRNN-KLVLIEK--ALRFSQNL 239 (317)
T ss_dssp TTSC-CCEEE--------CCCCCTTCCEEECCSS-CCCEECGG-G---GGGTTCSEEECTTS-CCCEECT--TCCCCTTC
T ss_pred CCCc-Ccccc--------cccccccCCEEECCCC-cCCcchhh-h---cccCcccEEECcCC-cccchhh--HhhcCCCC
Confidence 7754 33332 1234788888888873 55555432 2 45788888888876 5666654 34667788
Q ss_pred CEEEEecccCccccccCCCCcccccccceeccCCCcccccccccceeeccccccccc
Q 046345 877 QKAEVDYCENLEMIVGPKNPTTTLGFKEIIAEDDPIQKAIFPRLEELELKRLANIDK 933 (1462)
Q Consensus 877 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 933 (1462)
+.|++++++-....... ....+++|+.|++.++..++.
T Consensus 240 ~~L~l~~N~~~~~~~~~-------------------~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRD-------------------FFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CEEECTTCCCBHHHHHH-------------------HHHTCHHHHHHHHHHHHHHHS
T ss_pred CEEEccCCCccCcCHHH-------------------HHhccccceEEECCCchhccC
Confidence 88888876532111100 113467777777776655543
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=1.6e-14 Score=160.51 Aligned_cols=173 Identities=23% Similarity=0.327 Sum_probs=148.3
Q ss_pred cEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEE
Q 046345 520 PIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTL 598 (1462)
Q Consensus 520 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L 598 (1462)
.+++...++.+..+|.... ++++.|++.++. +..++...|.++++|++|+|++|.++.++. .+..+.+|++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTG------LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEccCCC------cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 4678888999999887543 789999999887 566777778999999999999999998754 68999999999
Q ss_pred EecCcccCC--ccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 599 CLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 599 ~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
+|++|.++. +..+..+.+|++|++++|.++.+|.. +..+++|++|++++| .+..+|+..++++++|++|++++|.+
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcC
Confidence 999999988 46789999999999999999999876 578999999999998 78899887799999999999999876
Q ss_pred ccccccCCCccchHhhhcCCCCcEEEEEeeccc
Q 046345 676 QWDKVEGGSNARLDELKELSKLTTLEIHVRDAE 708 (1462)
Q Consensus 676 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 708 (1462)
.. .....+..+++|+.|++++|...
T Consensus 168 ~~--------~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 168 QS--------VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SC--------CCTTTTTTCTTCCEEECCSCCBC
T ss_pred Cc--------cCHHHHhCCCCCCEEEeeCCcee
Confidence 32 12246778899999999987654
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=3.2e-14 Score=161.49 Aligned_cols=170 Identities=24% Similarity=0.322 Sum_probs=148.7
Q ss_pred CcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEE
Q 046345 519 DPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTL 598 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L 598 (1462)
.++.+.+.++.+..++....+++|++|++.+|. +..++. +.++++|++|++++|.++.+|. +..+++|++|
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~------l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK------LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC------CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCc------cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 588999999999998887789999999999987 455655 7899999999999999998765 8999999999
Q ss_pred EecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccc
Q 046345 599 CLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWD 678 (1462)
Q Consensus 599 ~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 678 (1462)
++++|.+..++.+..+++|++|++++|.++.+ ..++.+++|++|++++| .+..+++ +.++++|++|++++|.+.
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~-- 191 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS-- 191 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC--
Confidence 99999999988899999999999999999988 57899999999999998 6887776 899999999999998762
Q ss_pred cccCCCccchHhhhcCCCCcEEEEEeecccCCC
Q 046345 679 KVEGGSNARLDELKELSKLTTLEIHVRDAEILP 711 (1462)
Q Consensus 679 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 711 (1462)
.+..+..+++|+.|+++.|.+...+
T Consensus 192 --------~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 --------DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp --------BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred --------CChhhccCCCCCEEECcCCcccCCc
Confidence 2345888999999999998776543
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=2.3e-14 Score=158.04 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=103.2
Q ss_pred CccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCC-CCCCCc-ccCCCCcCcEEEecC-cccC
Q 046345 530 IEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIH-FSSLPS-SLGRLTSLQTLCLHW-CELE 606 (1462)
Q Consensus 530 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~-i~~lp~-~i~~L~~Lr~L~L~~-~~l~ 606 (1462)
+..+|. -.++++.|++.++. +..++...|.++++|++|++++|. ++.+|. .|..+++|++|++++ |.++
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~------l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETH------LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCC------CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred ccccCC--CCCcccEEEEeCCc------ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 556665 34478888888776 567777777888888888888886 777765 678888888888887 7777
Q ss_pred C--ccccccccCCcEEEecCCCCCccchhhccccccC---EEccCCcccccccCccccccccccc-eeeccCccc
Q 046345 607 D--IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLS---LLDLSDCWSLEVIAPNVISKLSRLE-ELYMGGSFS 675 (1462)
Q Consensus 607 ~--~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~---~L~L~~~~~l~~~p~~~l~~L~~L~-~L~l~~~~~ 675 (1462)
. +..|.++++|++|++++|.++.+|. ++.+++|+ +|++++|..+..+|+..+.++++|+ +|++++|.+
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 6 3567788888888888888888876 77777777 8888887567777776677777787 777766644
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=1.5e-14 Score=163.63 Aligned_cols=173 Identities=19% Similarity=0.245 Sum_probs=128.4
Q ss_pred cCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcc
Q 046345 526 PHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCE 604 (1462)
Q Consensus 526 ~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~ 604 (1462)
.+..+..+|... .+++++|++.+|. +..++...|.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 15 ~~~~l~~ip~~l-~~~l~~L~ls~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 15 MELNFYKIPDNL-PFSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TTSCCSSCCSSS-CTTCCEEECTTCC------CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred cCCCccccCCCC-CCCccEEECCCCc------ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344455566533 3578999988876 566776678889999999999999887754 78889999999999998
Q ss_pred cCC--ccccccccCCcEEEecCCCCCccch-hhccccccCEEccCCcccccccC-ccccccccccceeeccCcccccccc
Q 046345 605 LED--IAIVGQLKKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEVIA-PNVISKLSRLEELYMGGSFSQWDKV 680 (1462)
Q Consensus 605 l~~--~~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~~~~~~ 680 (1462)
+.. +..+.++.+|++|++++|.+..++. .++++++|++|++++| .+..++ +..++++++|++|++++|.+....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~- 165 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY- 165 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCC-
Confidence 887 4678889999999999998887766 5888999999999987 566532 334888999999999888653221
Q ss_pred cCCCccchHhhhcCCCCc-EEEEEeecccCCC
Q 046345 681 EGGSNARLDELKELSKLT-TLEIHVRDAEILP 711 (1462)
Q Consensus 681 ~~~~~~~~~~L~~l~~L~-~L~l~~~~~~~~~ 711 (1462)
...+..+..++.|. .|+++.|.+..++
T Consensus 166 ----~~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 166 ----CTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ----GGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred ----HHHhhhhhhccccceeeecCCCcccccC
Confidence 12344555555555 7788777665443
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=1.9e-14 Score=176.11 Aligned_cols=124 Identities=15% Similarity=0.053 Sum_probs=72.5
Q ss_pred CCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCCc
Q 046345 539 CPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLE 618 (1462)
Q Consensus 539 ~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~ 618 (1462)
+++|++|++.+|. +..++...|..+++|++|+|++|.++.+++ ++.+++|++|+|++|.+...+ ..++|+
T Consensus 33 ~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIE 102 (487)
T ss_dssp GGGCCEEECCSSC------CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCC
T ss_pred CCCccEEEeeCCc------CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcC
Confidence 3456666666655 344554556666666666666666655443 666666666666666655421 225666
Q ss_pred EEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 619 ILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 619 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
+|++++|.++.+|.. .+++|++|++++| .+..+++..++++++|++|++++|.+
T Consensus 103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp EEECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred EEECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCC
Confidence 666666666655542 4566666666665 45555444456666666666666544
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=3.1e-15 Score=172.33 Aligned_cols=151 Identities=16% Similarity=0.180 Sum_probs=103.0
Q ss_pred CcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCC--CCCcccC-------CCCcCcEEEecCcccCC--c
Q 046345 540 PRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFS--SLPSSLG-------RLTSLQTLCLHWCELED--I 608 (1462)
Q Consensus 540 ~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~--~lp~~i~-------~L~~Lr~L~L~~~~l~~--~ 608 (1462)
++|+.|++.++. + .+|..++.. |++|+|++|.+. .+|..+. .+.+|++|++++|.+.. |
T Consensus 43 ~~L~~l~l~~n~------l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 43 RSLEYLLKRVDT------E-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EECTTHHHHCCT------T-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred CCceeEeecccc------c-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 445555555554 3 556655443 777788888775 3566555 67888888888888774 5
Q ss_pred ccc--ccccCCcEEEecCCCCCccchhhccc-----cccCEEccCCcccccccCccccccccccceeeccCccccccccc
Q 046345 609 AIV--GQLKKLEILSFRDSDIKELPLEIGLL-----TRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVE 681 (1462)
Q Consensus 609 ~~i--~~L~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 681 (1462)
..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++| .+..+++..++++++|++|++++|.....
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--- 188 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGE--- 188 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHH---
T ss_pred HHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcc---
Confidence 554 78888888888888888777777776 78888888887 57777766678888888888887754210
Q ss_pred CCCccchHhh--hcCCCCcEEEEEeecc
Q 046345 682 GGSNARLDEL--KELSKLTTLEIHVRDA 707 (1462)
Q Consensus 682 ~~~~~~~~~L--~~l~~L~~L~l~~~~~ 707 (1462)
...+..+ +.+++|++|+++.|.+
T Consensus 189 ---~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 189 ---RGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp ---HHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred ---hHHHHHHHhccCCCCCEEECCCCcC
Confidence 0122333 6677777777765543
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=5e-14 Score=158.58 Aligned_cols=172 Identities=23% Similarity=0.273 Sum_probs=143.3
Q ss_pred CcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcE
Q 046345 519 DPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQT 597 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~ 597 (1462)
.++.+.+.++.+..++....+++|++|++.+|. +..++ .+..+++|++|++++|.++.+|. .+..+.+|++
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~------l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK------LHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC------CCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCC------CCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 588899999999888887889999999999887 34443 47889999999999999998865 4789999999
Q ss_pred EEecCcccCC--ccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeeccCcc
Q 046345 598 LCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 598 L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
|++++|.+.. +..++++++|++|++++|.++.+|.. ++++++|++|++++| .+..+++..++++++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc
Confidence 9999999988 35588999999999999999988765 578999999999998 6888888778899999999999887
Q ss_pred cccccccCCCccchHhhhcCCCCcEEEEEeecc
Q 046345 675 SQWDKVEGGSNARLDELKELSKLTTLEIHVRDA 707 (1462)
Q Consensus 675 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 707 (1462)
+.. .....++.+++|+.|+++.|..
T Consensus 193 l~~--------~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 193 LKS--------VPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CSC--------CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCc--------cCHHHHhCCcCCCEEEccCCCc
Confidence 632 2224567889999999987754
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=2.6e-14 Score=157.70 Aligned_cols=191 Identities=13% Similarity=0.202 Sum_probs=159.7
Q ss_pred cCcEEEEccCCCCccCCcc--CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecC-CCCCCCC-cccCCCC
Q 046345 518 EDPIAISLPHRDIEVLPER--LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTG-IHFSSLP-SSLGRLT 593 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~-~~i~~lp-~~i~~L~ 593 (1462)
..++.+.+.++.+..++.. ..+++|++|++.+|.. +..++...|.++++|++|++++ |.++.+| ..|..++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-----l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-----LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-----CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-----cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 4689999999999988873 5789999999999863 5678887899999999999999 9999887 4789999
Q ss_pred cCcEEEecCcccCCccccccccCCc---EEEecCC-CCCccchh-hccccccC-EEccCCcccccccCccccccccccce
Q 046345 594 SLQTLCLHWCELEDIAIVGQLKKLE---ILSFRDS-DIKELPLE-IGLLTRLS-LLDLSDCWSLEVIAPNVISKLSRLEE 667 (1462)
Q Consensus 594 ~Lr~L~L~~~~l~~~~~i~~L~~L~---~L~L~~~-~i~~lp~~-i~~L~~L~-~L~L~~~~~l~~~p~~~l~~L~~L~~ 667 (1462)
+|++|++++|.++..+.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++| .+..+|...+.. ++|++
T Consensus 106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~ 183 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDA 183 (239)
T ss_dssp TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEE
T ss_pred CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCE
Confidence 9999999999999844488888888 9999999 99999875 88999999 9999998 688898875555 89999
Q ss_pred eeccCcc-cccccccCCCccchHhhhcC-CCCcEEEEEeecccCCCccccccccceeEE
Q 046345 668 LYMGGSF-SQWDKVEGGSNARLDELKEL-SKLTTLEIHVRDAEILPQDLVFMELERYRI 724 (1462)
Q Consensus 668 L~l~~~~-~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i 724 (1462)
|++++|. +.. .....+..+ ++|+.|+++.|.+..++.. .+.+|+.|.+
T Consensus 184 L~L~~n~~l~~--------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 184 VYLNKNKYLTV--------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp EECTTCTTCCE--------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred EEcCCCCCccc--------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 9999984 532 122456778 8999999999988877765 5666666653
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=4.4e-14 Score=159.76 Aligned_cols=191 Identities=21% Similarity=0.223 Sum_probs=157.6
Q ss_pred cCcEEEEccCCCCccCCc--cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCc
Q 046345 518 EDPIAISLPHRDIEVLPE--RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTS 594 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~ 594 (1462)
..++++.+.++.+..++. ...+++|++|++.+|. +..++...|.++++|++|++++|.++.++ ..+..+.+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc------CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 468999999999988775 3578999999999987 57778778999999999999999999875 67999999
Q ss_pred CcEEEecCcccCC--ccccccccCCcEEEecCCCCCc--cchhhccccccCEEccCCcccccccCccccccccccc----
Q 046345 595 LQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKE--LPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLE---- 666 (1462)
Q Consensus 595 Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~---- 666 (1462)
|++|++++|.+.. +..++++++|++|++++|.++. +|..++++++|++|++++| .+..+++..+..+.+|+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccce
Confidence 9999999999988 3469999999999999999986 7899999999999999998 68888877788888888
Q ss_pred eeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCcc--ccccccceeEE
Q 046345 667 ELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD--LVFMELERYRI 724 (1462)
Q Consensus 667 ~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i 724 (1462)
+|++++|.+.... .......+|+.|+++.|.+..++.. ..+.+|+.+.+
T Consensus 181 ~L~ls~n~l~~~~---------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 181 SLDLSLNPMNFIQ---------PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp EEECCSSCCCEEC---------TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred eeecCCCcccccC---------ccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 8888888763221 2222344899999999988877764 23555665554
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=1.6e-13 Score=157.38 Aligned_cols=172 Identities=21% Similarity=0.311 Sum_probs=151.0
Q ss_pred cCcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 518 EDPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
..++++.+.++.+..++....+++|++|++.+|. +..++ .|..+++|++|++++|.++.+|. +..+++|++
T Consensus 63 ~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~------l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNP------LKNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC------CSCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred CCCCEEEccCCcCCCChhHccCCCCCEEEccCCc------CCCch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCE
Confidence 4689999999999998887789999999999987 44554 37899999999999999999875 999999999
Q ss_pred EEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCccccc
Q 046345 598 LCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQW 677 (1462)
Q Consensus 598 L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 677 (1462)
|++++|.+.....++++++|++|++++|.++.+|. +..+++|++|++++| .+..+++ +..+++|++|++++|.+..
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCCccCc
Confidence 99999999986569999999999999999999987 999999999999998 6887776 8999999999999987631
Q ss_pred ccccCCCccchHhhhcCCCCcEEEEEeecccCCCc
Q 046345 678 DKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQ 712 (1462)
Q Consensus 678 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 712 (1462)
...+..+++|+.|+++.|.+...+.
T Consensus 210 ----------~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 210 ----------VSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ----------CGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred ----------cccccCCCCCCEEEccCCeeecCCe
Confidence 1248899999999999998876554
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=2.6e-15 Score=184.33 Aligned_cols=335 Identities=16% Similarity=0.080 Sum_probs=180.8
Q ss_pred CcEEEEccCCCCcc-----CCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCC----cceEEEecCCCCC-----
Q 046345 519 DPIAISLPHRDIEV-----LPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTE----GLKVLDFTGIHFS----- 583 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~----~Lr~L~Ls~~~i~----- 583 (1462)
.++++.+.++.+.. ++.. ..+++|++|++.+|.. ....+..++..++ +|++|++++|.++
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-----HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-----ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 46666666666542 2222 3456777777766652 1112333444455 5777777777766
Q ss_pred CCCcccCCCCcCcEEEecCcccCC--ccccc-----cccCCcEEEecCCCCCc-----cchhhccccccCEEccCCcccc
Q 046345 584 SLPSSLGRLTSLQTLCLHWCELED--IAIVG-----QLKKLEILSFRDSDIKE-----LPLEIGLLTRLSLLDLSDCWSL 651 (1462)
Q Consensus 584 ~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~-----~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l 651 (1462)
.+|..+..+++|++|++++|.+.. +..+. ...+|++|++++|.++. ++..+..+++|++|++++|. +
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i 182 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-I 182 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-C
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-c
Confidence 346666777777777777777654 22222 24467777777776663 34555666777777777763 4
Q ss_pred cccCccccc-----cccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEE
Q 046345 652 EVIAPNVIS-----KLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICI 726 (1462)
Q Consensus 652 ~~~p~~~l~-----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~ 726 (1462)
.......+. .+++|++|++++|.+.... .......+..+++|++|+++.|.+.......
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~------------ 246 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN----CRDLCGIVASKASLRELALGSNKLGDVGMAE------------ 246 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH----HHHHHHHHHHCTTCCEEECCSSBCHHHHHHH------------
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHH----HHHHHHHHHhCCCccEEeccCCcCChHHHHH------------
Confidence 332222122 2446777777766542110 0112345566677777777666543211000
Q ss_pred ccccCCcccCccccceEEEccCcchh-----HHHHHHHHhccccceEeccccCcccccccccC--CCCCCCCcEEEEeec
Q 046345 727 GKKWDSWSVKSETSRFMKLQGLEKVS-----ILLWMKLLLKRTEDLYLSKLKGVQNVVHELDD--GEGFPRLNRLQVKDC 799 (1462)
Q Consensus 727 ~~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~--l~~l~~L~~L~L~~~ 799 (1462)
..+.+......++.+++.++.... ++..+ ..+++|++|++.++.-.......+.. ....++|++|++++|
T Consensus 247 --l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 247 --LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL-RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp --HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH-HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred --HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH-hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 000011124456666666654333 23332 23578999998876432111111110 123468999999987
Q ss_pred ccceeeecCcCCCccccccccccceecccccccccccccccccC--CCcCCCcCEEEEecCCCCC-----ccCCHHHHHH
Q 046345 800 YEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTE--DHSFINLRIIKVKACEKLK-----HLFSFSMAKN 872 (1462)
Q Consensus 800 ~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~--~~~~~~L~~L~l~~c~~L~-----~l~~~~~~~~ 872 (1462)
.-... ... ........+++|+.|+++++ .+.+.....+.. ....++|+.|++++| .+. .++ ..+..
T Consensus 324 ~l~~~-~~~--~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~--~~l~~ 396 (461)
T 1z7x_W 324 SFTAA-CCS--HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA--ATLLA 396 (461)
T ss_dssp CCBGG-GHH--HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH--HHHHH
T ss_pred CCchH-HHH--HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHH--HHHHh
Confidence 52111 000 00001234589999999985 454432211111 012679999999998 444 232 35677
Q ss_pred hccCCEEEEeccc
Q 046345 873 LLRLQKAEVDYCE 885 (1462)
Q Consensus 873 L~~L~~L~l~~c~ 885 (1462)
+++|++|++++|+
T Consensus 397 ~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 397 NHSLRELDLSNNC 409 (461)
T ss_dssp CCCCCEEECCSSS
T ss_pred CCCccEEECCCCC
Confidence 8999999999874
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=8.3e-14 Score=157.87 Aligned_cols=172 Identities=20% Similarity=0.197 Sum_probs=146.2
Q ss_pred CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEecCcccCCcccccccc
Q 046345 537 LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHWCELEDIAIVGQLK 615 (1462)
Q Consensus 537 ~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~ 615 (1462)
..+++++.+++.++. +..+|..++ +.+++|+|++|.++.+ |..|..+.+|++|+|++|.++.....+.++
T Consensus 7 ~~l~~l~~l~~~~~~------l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 77 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN------LTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP 77 (290)
T ss_dssp ECSTTCCEEECTTSC------CSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCT
T ss_pred cccCCccEEECCCCC------CCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCC
Confidence 456789999998776 577887654 6899999999999987 568999999999999999999855558999
Q ss_pred CCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCC
Q 046345 616 KLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELS 695 (1462)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~ 695 (1462)
+|++|++++|.++.+|..+..+++|++|++++| .+..+|+..+.++++|++|++++|.+... ....+..++
T Consensus 78 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~ 148 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTL--------PPGLLTPTP 148 (290)
T ss_dssp TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCC--------CTTTTTTCT
T ss_pred cCCEEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCcc--------Chhhccccc
Confidence 999999999999999999999999999999998 78899888899999999999999876422 224467899
Q ss_pred CCcEEEEEeecccCCCcc--ccccccceeEEEE
Q 046345 696 KLTTLEIHVRDAEILPQD--LVFMELERYRICI 726 (1462)
Q Consensus 696 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~ 726 (1462)
+|+.|+++.|.+..++.. ..+.+|+.|.+..
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 999999999999888775 3467788777643
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=1e-13 Score=157.26 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=148.9
Q ss_pred cCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCccc
Q 046345 526 PHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCEL 605 (1462)
Q Consensus 526 ~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l 605 (1462)
....+..+.....+++|+.|.+.++. +..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 32 ~~~~~~~~~~~~~l~~L~~L~l~~~~------i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 32 KKKSVTDAVTQNELNSIDQIIANNSD------IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp TCSCTTSEECHHHHHTCCEEECTTSC------CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred cCCCcccccchhhcCcccEEEccCCC------cccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence 33444444444568899999999887 455553 7889999999999999999987 99999999999999999
Q ss_pred CCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCc
Q 046345 606 EDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSN 685 (1462)
Q Consensus 606 ~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 685 (1462)
+.++.+.++++|++|++++|.++.++ .+..+++|++|++++| .+..++ .++++++|++|++++|.+..
T Consensus 103 ~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~N~l~~-------- 170 (291)
T 1h6t_A 103 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLEDNQISD-------- 170 (291)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSCCCC--------
T ss_pred CCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcch--hhccCCCCCEEEccCCcccc--------
Confidence 99878999999999999999999884 6899999999999998 677773 38999999999999987631
Q ss_pred cchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEEEc
Q 046345 686 ARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRICIG 727 (1462)
Q Consensus 686 ~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~ 727 (1462)
+..+..+++|+.|+++.|.+..++....+.+|+.|.+..+
T Consensus 171 --~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 171 --IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp --CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred --chhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 1238889999999999999888776566777887777544
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=9.8e-14 Score=156.18 Aligned_cols=180 Identities=18% Similarity=0.257 Sum_probs=145.3
Q ss_pred CCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccC
Q 046345 527 HRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELE 606 (1462)
Q Consensus 527 ~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~ 606 (1462)
.+.+........+++|+.|.+.++. +..++. +..+++|++|++++|.+..++ .+..+++|++|++++|.++
T Consensus 28 ~~~~~~~~~~~~l~~L~~L~l~~~~------i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 28 KKSVTDAVTQNELNSIDQIIANNSD------IKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp CSCTTSEECHHHHTTCCEEECTTSC------CCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred CcccccccccccccceeeeeeCCCC------cccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccC
Confidence 3334444444568899999998886 344443 688999999999999999875 7899999999999999998
Q ss_pred C--ccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCC
Q 046345 607 D--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGG 683 (1462)
Q Consensus 607 ~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 683 (1462)
. +..++++++|++|++++|.++.+|.. ++++++|++|++++| .+..+++..++++++|++|++++|.+..
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------ 171 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS------ 171 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC------
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc------
Confidence 8 35589999999999999999988776 689999999999998 7888888878999999999999987632
Q ss_pred CccchHhhhcCCCCcEEEEEeecccCCCcc--ccccccceeEE
Q 046345 684 SNARLDELKELSKLTTLEIHVRDAEILPQD--LVFMELERYRI 724 (1462)
Q Consensus 684 ~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i 724 (1462)
.....++.+++|+.|+++.|.+..++.. ..+.+|+.|.+
T Consensus 172 --~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 172 --LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred --cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 1224467899999999999988877654 34455555544
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=3e-13 Score=147.52 Aligned_cols=147 Identities=23% Similarity=0.281 Sum_probs=128.1
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLC 599 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~ 599 (1462)
..+...++.+..+|... .++|++|++.+|. +..++...|..+++|++|+|++|.+..+|. .|..+.+|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI-PTNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEeEccCCCcCccCCCC-CCCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 35777778888888744 4899999999987 566767778999999999999999999875 578999999999
Q ss_pred ecCcccCC-c-cccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 600 LHWCELED-I-AIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 600 L~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
|++|.++. + ..+..+.+|++|++++|.++.+|..+.++++|++|++++| .+..+++..+.++++|++|++.+|..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999988 3 5578999999999999999999999999999999999998 78888887789999999999998865
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=1.9e-13 Score=170.13 Aligned_cols=170 Identities=24% Similarity=0.324 Sum_probs=149.1
Q ss_pred CcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEE
Q 046345 519 DPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTL 598 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L 598 (1462)
.++.+.+.++.+..++....+++|+.|++.+|. +..++. |..+++|++|+|++|.+..+| .+..+.+|++|
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~------l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK------LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC------CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCC------CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 578889999999999887889999999999887 455655 789999999999999999887 68999999999
Q ss_pred EecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccc
Q 046345 599 CLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWD 678 (1462)
Q Consensus 599 ~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 678 (1462)
+|++|.+..++.+..+++|++|+|++|.++.+ ..+..+++|++|+|++| .+..+++ +..+++|++|++++|.+.
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~-- 188 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS-- 188 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCC--
Confidence 99999999988899999999999999999988 67899999999999998 6777766 899999999999998762
Q ss_pred cccCCCccchHhhhcCCCCcEEEEEeecccCCC
Q 046345 679 KVEGGSNARLDELKELSKLTTLEIHVRDAEILP 711 (1462)
Q Consensus 679 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 711 (1462)
.+..+..+++|+.|+++.|.+...|
T Consensus 189 --------~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 --------DLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --------BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred --------CChHHccCCCCCEEEccCCcCcCCc
Confidence 2356888999999999988776544
No 92
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.46 E-value=5.8e-12 Score=148.12 Aligned_cols=295 Identities=13% Similarity=0.106 Sum_probs=173.0
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCC------CHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTP------DHQKIQDK 228 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~ 228 (1462)
....|+||+++++.+..++.++ +++.|+|++|+|||||++.+++.. . ++|+++.... +...+...
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHH
Confidence 3467899999999999998776 599999999999999999998764 1 7788875432 55666666
Q ss_pred HHHHhCC-----------------CCCC-CcChHHHHHHHHHHHHccCcEEEEEcCCcccccc-----cccCCCCccccc
Q 046345 229 LAFDLGM-----------------EFGL-NENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL-----DVVGIPYGDVEK 285 (1462)
Q Consensus 229 i~~~l~~-----------------~~~~-~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-----~~~~~~~~~l~~ 285 (1462)
+...+.. .... .....+....+.+.....++.+||+||++...++ ..+...+..+.
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~- 159 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY- 159 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-
Confidence 6665532 0000 0112223333333332224899999999875431 11111111110
Q ss_pred cccCCCCCcEEEEEecchhhhhh----------ccCC-CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHc
Q 046345 286 ERKDDESGCTIILTSRNRDLLEK----------DMKS-QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERC 354 (1462)
Q Consensus 286 ~~~~~~~gs~IlvTtr~~~v~~~----------~~~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~ 354 (1462)
....+.++|+|++....... ..+. ...+++.+|+.+|+.+++......... .-..+.+.+|++.+
T Consensus 160 ---~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~~~~~~~i~~~t 235 (350)
T 2qen_A 160 ---DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVPENEIEEAVELL 235 (350)
T ss_dssp ---HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHH
T ss_pred ---HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHh
Confidence 11247789999886543211 0111 247999999999999999876532111 12356788999999
Q ss_pred cCCchHHHHHHHHHhc-CCHHHHH-HHHHHHhcCccccccchhhHHHHHHHHhhhccChHHHHHHHHHhcccCCCcccCh
Q 046345 355 EGLPVALSTIANALKS-KSLDFWK-DALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFLLCGLYSEGHAIQV 432 (1462)
Q Consensus 355 ~glPlai~~~~~~l~~-~~~~~w~-~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~fp~~~~i~~ 432 (1462)
||+|+++..++..+.. .+...+. .+.+.. ...+...+.-.+.+ ++ ..+..+..+|. + .+..
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~~~-~~-~~~~~l~~la~---g-~~~~ 298 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA-----------KGLIMGELEELRRR-SP-RYVDILRAIAL---G-YNRW 298 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHH-CH-HHHHHHHHHHT---T-CCSH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHHHHHHHH-----------HHHHHHHHHHHHhC-Ch-hHHHHHHHHHh---C-CCCH
Confidence 9999999998876532 2332221 111110 01111111111112 54 67888888887 2 2444
Q ss_pred hHHHHHHhc-cccccccccHHHHHHHHHHHHHHHHHccccccCCCCCcEEE-cchHHHHH
Q 046345 433 PSLLRYGMG-LCLFENVYKLEEARSRVHTLIDILKASCLLSDGDAEDEVKM-HDIIHVVA 490 (1462)
Q Consensus 433 ~~Li~~W~a-~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~m-H~lv~~~a 490 (1462)
..+....-+ .| ..+. .....+++.|.+.+++... ...|++ |++++.+.
T Consensus 299 ~~l~~~~~~~~~----~~~~----~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 299 SLIRDYLAVKGT----KIPE----PRLYALLENLKKMNWIVEE--DNTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHHHHTTC----CCCH----HHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHH
T ss_pred HHHHHHHHHHhC----CCCH----HHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHH
Confidence 555443211 11 0111 2244568888999999764 245766 67777765
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=8.4e-14 Score=160.27 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=84.7
Q ss_pred cCCcceEEEecCCCCC-CCCccc--CCCCcCcEEEecCcccCC-ccccccc-----cCCcEEEecCCCCCccc-hhhccc
Q 046345 568 GTEGLKVLDFTGIHFS-SLPSSL--GRLTSLQTLCLHWCELED-IAIVGQL-----KKLEILSFRDSDIKELP-LEIGLL 637 (1462)
Q Consensus 568 ~l~~Lr~L~Ls~~~i~-~lp~~i--~~L~~Lr~L~L~~~~l~~-~~~i~~L-----~~L~~L~L~~~~i~~lp-~~i~~L 637 (1462)
++++|++|+|++|.++ .+|..+ ..+++|++|+|++|.+.. |..++.+ ++|++|++++|.+..+| ..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4677777777777776 456654 677777777777777666 5556665 67777777777777665 566777
Q ss_pred cccCEEccCCcccccc--cCcc-ccccccccceeeccCcccccccccCCCccch-HhhhcCCCCcEEEEEeecccCC
Q 046345 638 TRLSLLDLSDCWSLEV--IAPN-VISKLSRLEELYMGGSFSQWDKVEGGSNARL-DELKELSKLTTLEIHVRDAEIL 710 (1462)
Q Consensus 638 ~~L~~L~L~~~~~l~~--~p~~-~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~l~~L~~L~l~~~~~~~~ 710 (1462)
++|++|++++|.-... ++.. .++++++|++|++++|.+... .... ..+..+++|+.|+++.|.+...
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP------SGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH------HHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch------HHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 7777777777632221 1222 126677777777777654210 0111 2234567777777777666543
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=2.6e-13 Score=146.86 Aligned_cols=146 Identities=21% Similarity=0.258 Sum_probs=109.5
Q ss_pred EEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEe
Q 046345 522 AISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCL 600 (1462)
Q Consensus 522 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L 600 (1462)
.+...++.+..+|.... ++++.|++.+|. +..++...|..+++|++|+|++|.++.+ |..|..+.+|++|+|
T Consensus 15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP-ETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp EEECTTSCCSSCCSSCC-TTCCEEECCSSC------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred EEEcCCCCcCcCCCccC-cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 45666677777776432 678888887776 5667766778888888888888888776 667888888888888
Q ss_pred cCcccCC-c-cccccccCCcEEEecCCCCCccc-hhhccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 601 HWCELED-I-AIVGQLKKLEILSFRDSDIKELP-LEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 601 ~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
++|.++. | ..|.++.+|++|+|++|.++.++ ..+..+++|++|++++| .+..+++..+..+++|++|++++|..
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8888877 3 44677888888888888888764 45777888888888887 67777776677788888888877754
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=4e-13 Score=149.17 Aligned_cols=152 Identities=22% Similarity=0.314 Sum_probs=135.7
Q ss_pred cCcEEEEccCCCCccCCcc--CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCc
Q 046345 518 EDPIAISLPHRDIEVLPER--LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTS 594 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~ 594 (1462)
..++++.+.++.+..++.. ..+++|++|++.+|. +..++...|..+++|++|+|++|.++.+|. .|..+.+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ------LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc------CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCC
Confidence 4689999999999887753 578999999999987 567778889999999999999999998874 6899999
Q ss_pred CcEEEecCcccCC-c-cccccccCCcEEEecCCCCCccch-hhccccccCEEccCCcccccccCccccccccccceeecc
Q 046345 595 LQTLCLHWCELED-I-AIVGQLKKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMG 671 (1462)
Q Consensus 595 Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 671 (1462)
|++|+|++|.++. + ..+.++.+|++|++++|.++.+|. .++.+++|++|++++| .+..+++..+.++++|++|+++
T Consensus 109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEee
Confidence 9999999999998 3 457899999999999999999987 5889999999999998 7888888779999999999999
Q ss_pred Ccccc
Q 046345 672 GSFSQ 676 (1462)
Q Consensus 672 ~~~~~ 676 (1462)
+|...
T Consensus 188 ~N~~~ 192 (251)
T 3m19_A 188 GNQFD 192 (251)
T ss_dssp SCCBC
T ss_pred CCcee
Confidence 98763
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=3e-13 Score=143.89 Aligned_cols=106 Identities=22% Similarity=0.296 Sum_probs=49.0
Q ss_pred hhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCc-cchhhccccccCE
Q 046345 566 FEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKE-LPLEIGLLTRLSL 642 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~~ 642 (1462)
+..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..++++++|++|++++|.++. .|..++++++|++
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 344444555555544443332 34444455555555544443 4444444555555555544442 3444444555555
Q ss_pred EccCCcccccccCccccccccccceeeccCcc
Q 046345 643 LDLSDCWSLEVIAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 643 L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
|++++|..+..+|. +.++++|++|++++|.
T Consensus 141 L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 141 IDLSYNGAITDIMP--LKTLPELKSLNIQFDG 170 (197)
T ss_dssp EECCSCTBCCCCGG--GGGCSSCCEEECTTBC
T ss_pred EEccCCCCccccHh--hcCCCCCCEEECCCCC
Confidence 55554422444431 4444555555544443
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=4.3e-13 Score=145.10 Aligned_cols=147 Identities=16% Similarity=0.237 Sum_probs=113.5
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCcccccc-ChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQM-SDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTL 598 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l-~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L 598 (1462)
+.+.+.++.+..+|... .+.++.|++.+|. +..+ +..+|..+++|++|+|++|.|+.++. .|..+.+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 36777788887777633 4567888888876 4454 44567888888888888888887754 68888888888
Q ss_pred EecCcccCC--ccccccccCCcEEEecCCCCCcc-chhhccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 599 CLHWCELED--IAIVGQLKKLEILSFRDSDIKEL-PLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 599 ~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
+|++|.++. +..|.++++|++|++++|.++.+ |..+..+++|++|++++| .+..+++..+..+++|++|++++|..
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 888888877 45588888888888888888877 556778888888888887 67777666688888888888887765
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=4.1e-13 Score=149.73 Aligned_cols=166 Identities=19% Similarity=0.211 Sum_probs=136.1
Q ss_pred EEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEec
Q 046345 522 AISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLH 601 (1462)
Q Consensus 522 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 601 (1462)
++.+..+.+..++....+++|++|++.+|. +..++ .+..+++|++|++++|.++.+|. +..+++|++|+++
T Consensus 23 ~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~------i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 23 KQNLGKQSVTDLVSQKELSGVQNFNGDNSN------IQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHTCSCTTSEECHHHHTTCSEEECTTSC------CCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHhcCCCcccccchhhcCcCcEEECcCCC------cccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 344555666666655678899999999886 45666 37889999999999999999887 9999999999999
Q ss_pred CcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCccccccccc
Q 046345 602 WCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVE 681 (1462)
Q Consensus 602 ~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 681 (1462)
+|.++..+.+.. .+|++|++++|.++.+| .+.++++|++|++++| .++.++. ++++++|++|++++|.+..
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~---- 164 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN---- 164 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB----
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc----
Confidence 999988544555 99999999999999886 5899999999999998 6888763 8999999999999987631
Q ss_pred CCCccchHhhhcCCCCcEEEEEeecccCCC
Q 046345 682 GGSNARLDELKELSKLTTLEIHVRDAEILP 711 (1462)
Q Consensus 682 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 711 (1462)
...+..+++|+.|+++.|.+...+
T Consensus 165 ------~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 ------TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ------CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ------hHHhccCCCCCEEeCCCCcccCCc
Confidence 156788999999999988776543
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=6e-13 Score=141.52 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=128.2
Q ss_pred CcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCC-CCcccCCCCcCcE
Q 046345 519 DPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSS-LPSSLGRLTSLQT 597 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~Lr~ 597 (1462)
.++++.+.++.+..++....+++|++|++.+|. ...++ .|..+++|++|++++|.++. .|..++.+++|++
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~------~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIH------ATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC------CSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCC------CCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 588999999999998877789999999999985 34443 47899999999999999986 6888999999999
Q ss_pred EEecCcccCC--ccccccccCCcEEEecCCC-CCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcc
Q 046345 598 LCLHWCELED--IAIVGQLKKLEILSFRDSD-IKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 598 L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 674 (1462)
|++++|.+.. +..++++++|++|++++|. +..+| .+..+++|++|++++| .+..++. +.++++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcc
Confidence 9999999987 7889999999999999998 99997 6999999999999998 6777773 8999999999998886
Q ss_pred c
Q 046345 675 S 675 (1462)
Q Consensus 675 ~ 675 (1462)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 5
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=6.7e-13 Score=155.39 Aligned_cols=111 Identities=10% Similarity=0.076 Sum_probs=58.7
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC---ccccccccCCcE-EEecCCCCCccch
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED---IAIVGQLKKLEI-LSFRDSDIKELPL 632 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~---~~~i~~L~~L~~-L~L~~~~i~~lp~ 632 (1462)
+..+|.+++ ++++.|+|++|.|+.+|. +|.++++|++|+|++|.+.. +..|.++.+|+. +.+++|+++.+|+
T Consensus 21 Lt~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 21 VTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CCSCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 344554432 345566666666666653 45666666666666665533 234555555543 3444455665533
Q ss_pred -hhccccccCEEccCCcccccccCccccccccccceeeccC
Q 046345 633 -EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGG 672 (1462)
Q Consensus 633 -~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 672 (1462)
.+..+++|++|++++| .+..+|+..+....++..|++.+
T Consensus 98 ~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp TSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEES
T ss_pred hhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcc
Confidence 3455666666666665 45555544344444555555433
No 101
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=9.9e-12 Score=146.63 Aligned_cols=295 Identities=13% Similarity=0.125 Sum_probs=168.4
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-----CCHHHHHHHHH
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-----PDHQKIQDKLA 230 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~ 230 (1462)
...|+||+++++.+.. +.. +++.|+|++|+|||||++.+++... . ..+|+++... .+...+...+.
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 4678999999999999 766 5999999999999999999998863 1 2688887643 34455555544
Q ss_pred HHhC------------------CCCCC-C-c-C----hHHHHHHHHHHHHc-c-CcEEEEEcCCcccccccccCCCCccc
Q 046345 231 FDLG------------------MEFGL-N-E-N----TFQKAYRLCERLKK-E-KKVLIILDNIWTKLELDVVGIPYGDV 283 (1462)
Q Consensus 231 ~~l~------------------~~~~~-~-~-~----~~~~~~~l~~~l~~-~-k~~LlVlDdv~~~~~~~~~~~~~~~l 283 (1462)
..+. ...+. . . . .......+.+.+.. . ++.+||+||++...+... ..+..+
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~--~~~~~~ 160 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG--VNLLPA 160 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT--CCCHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc--hhHHHH
Confidence 4331 00000 0 0 0 00112334444432 1 489999999976432100 000011
Q ss_pred cccccCCCCCcEEEEEecchhhhhh---------cc-CC-CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHH
Q 046345 284 EKERKDDESGCTIILTSRNRDLLEK---------DM-KS-QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVE 352 (1462)
Q Consensus 284 ~~~~~~~~~gs~IlvTtr~~~v~~~---------~~-~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~ 352 (1462)
++.+.....+.++|+|++....... .. +. ...+++.+|+.+|+.+++...++......+ +. .+|++
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~-~~i~~ 237 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--DY-EVVYE 237 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--CH-HHHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC--cH-HHHHH
Confidence 1111112246789999987643211 01 12 257999999999999999876531111111 11 78999
Q ss_pred HccCCchHHHHHHHHHhcC-CHHHHHH-HHHHHhcCccccccchhhHHHHHHH-Hhhh--ccChHHHHHHHHHhcccCCC
Q 046345 353 RCEGLPVALSTIANALKSK-SLDFWKD-ALYRLRSSNAREIHGMRANVFTSIE-LSYN--LLEIEEAKSLFLLCGLYSEG 427 (1462)
Q Consensus 353 ~~~glPlai~~~~~~l~~~-~~~~w~~-~~~~l~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~~k~cf~~~a~fp~~ 427 (1462)
.++|+|+++..++..+... +...|.. +.+. ....+...+. +.+. .+++ ..+..+..+|. +
T Consensus 238 ~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---g 302 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY-----------AKKLILKEFENFLHGREIARK-RYLNIMRTLSK---C 302 (357)
T ss_dssp HHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---C
T ss_pred HhCCCHHHHHHHHHHHccccchHHHHHHHHHH-----------HHHHHHHHHHHHhhccccccH-HHHHHHHHHHc---C
Confidence 9999999999998776432 4333321 1111 0011222222 1111 5775 67888888887 2
Q ss_pred cccChhHHHHHHh-ccccccccccHHHHHHHHHHHHHHHHHccccccCCCCCcEEE-cchHHHHH
Q 046345 428 HAIQVPSLLRYGM-GLCLFENVYKLEEARSRVHTLIDILKASCLLSDGDAEDEVKM-HDIIHVVA 490 (1462)
Q Consensus 428 ~~i~~~~Li~~W~-a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~m-H~lv~~~a 490 (1462)
. +...+....- ..|. ..+. .....+++.|.+.+++...+ ..|++ |++++++.
T Consensus 303 -~-~~~~l~~~~~~~~g~---~~~~----~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 -G-KWSDVKRALELEEGI---EISD----SEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp -B-CHHHHHHHHHHHHCS---CCCH----HHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred -C-CHHHHHHHHHHhcCC---CCCH----HHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 1 3444432110 0110 0111 23445788899999997643 46775 67887764
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=4.7e-13 Score=163.68 Aligned_cols=206 Identities=16% Similarity=0.166 Sum_probs=152.9
Q ss_pred CcEEEEccCCCCccCCc--cCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCc
Q 046345 519 DPIAISLPHRDIEVLPE--RLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQ 596 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr 596 (1462)
+++.+.+.+|.+..++. ...+++|++|++.+|. +..+++ |..+++|++|+|++|.++.+|.. ++|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~ 102 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV------LYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIE 102 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC------CEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC------CCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence 58999999999988764 3578999999999987 344443 78999999999999999877643 7899
Q ss_pred EEEecCcccCCccccccccCCcEEEecCCCCCcc-chhhccccccCEEccCCcccccccCccccc-cccccceeeccCcc
Q 046345 597 TLCLHWCELEDIAIVGQLKKLEILSFRDSDIKEL-PLEIGLLTRLSLLDLSDCWSLEVIAPNVIS-KLSRLEELYMGGSF 674 (1462)
Q Consensus 597 ~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~-~L~~L~~L~l~~~~ 674 (1462)
+|++++|.+..... ..+++|++|++++|.++.+ |..++++++|++|++++| .+...++..+. .+++|++|++++|.
T Consensus 103 ~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 103 TLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999888221 2468899999999999877 457889999999999998 56665444454 78999999999887
Q ss_pred cccccccCCCccchHhhhcCCCCcEEEEEeecccCCCcc-ccccccceeEEEEcc--ccCCcccCccccceEEEccC
Q 046345 675 SQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD-LVFMELERYRICIGK--KWDSWSVKSETSRFMKLQGL 748 (1462)
Q Consensus 675 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~i~~~~--~~~~~~~~~~~l~~l~l~~~ 748 (1462)
+... .....+++|+.|++++|.+..+++. ..+.+|+.|.+..+. ..+.+....+.++.+++.++
T Consensus 181 l~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 181 IYDV----------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CCEE----------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred cccc----------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence 6321 2334588999999999988877665 456677777664322 12222333344555555554
No 103
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.39 E-value=9.4e-12 Score=149.95 Aligned_cols=311 Identities=14% Similarity=0.075 Sum_probs=180.2
Q ss_pred cccchhHHHHHHHHHHh-c----c--CCceEEEE--EecCCCcHHHHHHHHHHHHhhc---cCCC-eEEEEEecCCCCHH
Q 046345 157 EAFDSRMKVFQDVVEAA-K----D--DKLNIIGV--YGMGGVGKTTLVKQVAKQVMED---KSFD-KVVMAEVTQTPDHQ 223 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l-~----~--~~~~vv~I--~G~~GvGKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~~~~~ 223 (1462)
..++||+++++.+..++ . . ...+.+.| +|++|+||||||+.+++..... ..+. .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999999888 4 2 24557777 9999999999999999987532 1222 36788877777888
Q ss_pred HHHHHHHHHhCCCCCC-CcChHHHHHHHHHHHH-ccCcEEEEEcCCccccc-----ccccCCCCccccccccCCC--CCc
Q 046345 224 KIQDKLAFDLGMEFGL-NENTFQKAYRLCERLK-KEKKVLIILDNIWTKLE-----LDVVGIPYGDVEKERKDDE--SGC 294 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~-----~~~~~~~~~~l~~~~~~~~--~gs 294 (1462)
.++..++.+++...+. .....+....+...+. .+++++||+||++.... .+.+...+..+ ......+ .+.
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVH-EEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHH-HHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHH-HhcccCCCCceE
Confidence 9999999998765431 1223344445555553 36799999999987432 11111000000 0000012 345
Q ss_pred EEEEEecchhhhh-------hc-cCCCceEEccCCCHHHHHHHHHHHhCCC-CCCCCchHHHHHHHHHcc------CCch
Q 046345 295 TIILTSRNRDLLE-------KD-MKSQKNFLIEVLSKDEALQLFECIVGDS-AKTSAIQPIADEIVERCE------GLPV 359 (1462)
Q Consensus 295 ~IlvTtr~~~v~~-------~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~------glPl 359 (1462)
.||+||+...... .. ..-...+++.+++.++++++|...+... ....-..+.+..|++.++ |.|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 6888887654321 00 1112239999999999999998665210 111233577889999999 9997
Q ss_pred HHHHHHHHHh------cC---CHHHHHHHHHHHhcCccccccchhhHHHHHHHHhhhccChHHHHHHHHHhcccC--CCc
Q 046345 360 ALSTIANALK------SK---SLDFWKDALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFLLCGLYS--EGH 428 (1462)
Q Consensus 360 ai~~~~~~l~------~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~fp--~~~ 428 (1462)
.+..+..... +. +.+.+..+...... ...+.-.+..||+ ..+.++..+|.+. .+.
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSI-HELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCC
Confidence 6555443211 11 23333333322110 1233445678886 6788888888654 333
Q ss_pred ccChhHHHHHHh--c-cccccccccHHHHHHHHHHHHHHHHHccccccC----CCCCcEEEcchH
Q 046345 429 AIQVPSLLRYGM--G-LCLFENVYKLEEARSRVHTLIDILKASCLLSDG----DAEDEVKMHDII 486 (1462)
Q Consensus 429 ~i~~~~Li~~W~--a-~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----~~~~~~~mH~lv 486 (1462)
.+...++...|. + .-.-....+ ...+.++++.|...+++... +..++|++|++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNVKPRG----YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCCCCCC----HHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CccHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 555555544432 1 100000011 12345678889999998642 234557777665
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=6.4e-13 Score=155.30 Aligned_cols=135 Identities=18% Similarity=0.131 Sum_probs=104.9
Q ss_pred hhhhhcC--CcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC---ccccccccCCcEEEecCCCCC-ccchhhcc
Q 046345 563 DLFFEGT--EGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED---IAIVGQLKKLEILSFRDSDIK-ELPLEIGL 636 (1462)
Q Consensus 563 ~~~f~~l--~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~i~-~lp~~i~~ 636 (1462)
+..+..+ +++++|++++|.+...+..+..+.+|++|++++|.+.. +..+.++++|++|++++|.++ ..|..+++
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 3446666 88999999999988877777889999999999998764 567888999999999999887 66778888
Q ss_pred ccccCEEccCCcccccc--cCccccccccccceeeccCc-ccccccccCCCccchHhhhcCC-CCcEEEEEee
Q 046345 637 LTRLSLLDLSDCWSLEV--IAPNVISKLSRLEELYMGGS-FSQWDKVEGGSNARLDELKELS-KLTTLEIHVR 705 (1462)
Q Consensus 637 L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~l~-~L~~L~l~~~ 705 (1462)
+++|++|++++|..+.. ++.. +.++++|++|++++| .+. .......+..++ +|++|+++++
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~-------~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFT-------EKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCC-------HHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcC-------hHHHHHHHHhcccCCCEEEeCCC
Confidence 99999999999865653 3333 778899999999887 441 112345577788 8888888755
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=2.1e-12 Score=138.83 Aligned_cols=146 Identities=21% Similarity=0.302 Sum_probs=118.0
Q ss_pred EEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEe
Q 046345 522 AISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCL 600 (1462)
Q Consensus 522 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L 600 (1462)
.+...++.+..+|... .++++.|++.++. +..++...|.++++|++|++++|.++.+|. .+..+.+|++|++
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNS------LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCc------cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 4556666677776533 5688999998887 567777778889999999999999988875 4688999999999
Q ss_pred cCcccCC-c-cccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 601 HWCELED-I-AIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 601 ~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
++|.++. + ..+.++++|++|++++|.++.+|.. +.++++|++|++++| .+..+++..+.++++|++|++++|..
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe
Confidence 9998887 3 4578899999999999998888765 678899999999987 67778877678889999999888754
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=7.7e-13 Score=164.66 Aligned_cols=178 Identities=19% Similarity=0.238 Sum_probs=147.3
Q ss_pred ccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcc
Q 046345 525 LPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCE 604 (1462)
Q Consensus 525 l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~ 604 (1462)
+..+.+..+.....+++|+.|.+.++. +..++. |..+++|+.|+|++|.+..+|. +..+.+|++|+|++|.
T Consensus 28 l~~~~i~~~~~~~~L~~L~~L~l~~n~------i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 28 LKKKSVTDAVTQNELNSIDQIIANNSD------IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp TTCSCTTSEECHHHHTTCCCCBCTTCC------CCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred ccCCCcccccchhcCCCCCEEECcCCC------CCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC
Confidence 333444444445678899999998887 455653 7899999999999999999877 9999999999999999
Q ss_pred cCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCC
Q 046345 605 LEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGS 684 (1462)
Q Consensus 605 l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 684 (1462)
+..++.+..+.+|++|+|++|.+..+| .+..+++|++|+|++| .+..++ .++.+++|++|++++|.+..
T Consensus 99 l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~l~~------- 167 (605)
T 1m9s_A 99 IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLEDNQISD------- 167 (605)
T ss_dssp CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCG--GGGSCTTCSEEECCSSCCCC-------
T ss_pred CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCch--hhcccCCCCEEECcCCcCCC-------
Confidence 999889999999999999999999875 5899999999999998 677773 38999999999999987631
Q ss_pred ccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEEE
Q 046345 685 NARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRIC 725 (1462)
Q Consensus 685 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~ 725 (1462)
+..+..+++|+.|+|+.|.+..++....+.+|+.|.+.
T Consensus 168 ---~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 168 ---IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp ---CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred ---chhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEcc
Confidence 12288999999999999988877655566777777653
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=1.1e-12 Score=141.74 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=123.1
Q ss_pred eEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC--ccccccccCCcE
Q 046345 543 DLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED--IAIVGQLKKLEI 619 (1462)
Q Consensus 543 r~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~ 619 (1462)
+.+++.++. +..+|..+. ..|+.|++++|.|+.+|. .|..+.+|++|+|++|.+.. +..|.++.+|++
T Consensus 14 ~~v~c~~~~------l~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKG------LTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSC------CSSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEEEcCCCC------cCcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 456665554 567776543 689999999999998865 79999999999999999987 688999999999
Q ss_pred EEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCc
Q 046345 620 LSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLT 698 (1462)
Q Consensus 620 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 698 (1462)
|+|++|.++.+|.. +..+++|++|++++| .+..+++..+.++++|++|++++|.+... ....+..+++|+
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~ 155 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTI--------AKGTFSPLRAIQ 155 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCC
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEE--------CHHHHhCCCCCC
Confidence 99999999999887 478999999999998 78888877799999999999999876422 224577889999
Q ss_pred EEEEEeecc
Q 046345 699 TLEIHVRDA 707 (1462)
Q Consensus 699 ~L~l~~~~~ 707 (1462)
.|+++.|..
T Consensus 156 ~L~L~~N~~ 164 (220)
T 2v9t_B 156 TMHLAQNPF 164 (220)
T ss_dssp EEECCSSCE
T ss_pred EEEeCCCCc
Confidence 999987754
No 108
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=5.8e-13 Score=155.63 Aligned_cols=100 Identities=22% Similarity=0.238 Sum_probs=75.9
Q ss_pred cceEEEecCCCCCCCCcccCCC--CcCcEEEecCcccCC-ccccccccCCcEEEecCCCCCc--cchhhccccccCEEcc
Q 046345 571 GLKVLDFTGIHFSSLPSSLGRL--TSLQTLCLHWCELED-IAIVGQLKKLEILSFRDSDIKE--LPLEIGLLTRLSLLDL 645 (1462)
Q Consensus 571 ~Lr~L~Ls~~~i~~lp~~i~~L--~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L 645 (1462)
.++.|+++++.+. |..+..+ .++++|++++|.+.. +..+.++.+|++|++++|.+.. +|..+.++++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4778888888776 5556666 788888888888877 5567788888888888888763 7777888888888888
Q ss_pred CCcccccccCccccccccccceeeccCc
Q 046345 646 SDCWSLEVIAPNVISKLSRLEELYMGGS 673 (1462)
Q Consensus 646 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 673 (1462)
++| .+....+..++++++|++|++++|
T Consensus 126 ~~~-~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 126 EGL-RLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp TTC-BCCHHHHHHHTTCTTCSEEECTTC
T ss_pred cCc-ccCHHHHHHHhcCCCCCEEECCCC
Confidence 887 455333333777888888888776
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.34 E-value=6.6e-12 Score=146.96 Aligned_cols=178 Identities=14% Similarity=0.143 Sum_probs=113.9
Q ss_pred ccCCcEEEEecCCCcccccCcCcCCCCCccEEEEcccccceeeeccccccccCceeeeccccccccCcCccccccccCCc
Q 046345 1100 FSKLKNLVIFRCNNLMNIFPPLVGIPQSLVNFKLSYCKKIEEIIGHVGEEVKGNHIAFNELKFLELDKLPRLRSFCLENY 1179 (1462)
Q Consensus 1100 l~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 1179 (1462)
++++..+.+.++++++.+.|..+..+++|+.|+++++ .+..++.... ....++..|++.++.+++.++....
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~-------~~~~~l~~l~l~~~~~i~~l~~~~f 149 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHK-------IHSLQKVLLDIQDNINIHTIERNSF 149 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTT-------CCBSSCEEEEEESCTTCCEECTTSS
T ss_pred chhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhh-------cccchhhhhhhccccccccccccch
Confidence 3445554455556666654555666666777776664 3444443221 1134455556656566665554222
Q ss_pred cccCCCcceEeeecccCcccccCCccccccceeEEeeeccccccccccccchhhhHHHHHHHhhccceEEEEecCCCcce
Q 046345 1180 TLEFPSLERFSMKECRNMKTFSQGALFTPKLCKVQMIENEEDDLHHWEGNLNSTIQKHYEEMCLNNLEVLEVRNCDSLEE 1259 (1462)
Q Consensus 1180 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 1259 (1462)
......++.|++++ +.++.++...+..++|+.|++.++. .+..+ +...+.. +++|++|++++|. ++.
T Consensus 150 ~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n---------~l~~i-~~~~f~~-l~~L~~LdLs~N~-l~~ 216 (350)
T 4ay9_X 150 VGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNN---------NLEEL-PNDVFHG-ASGPVILDISRTR-IHS 216 (350)
T ss_dssp TTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCT---------TCCCC-CTTTTTT-EECCSEEECTTSC-CCC
T ss_pred hhcchhhhhhcccc-ccccCCChhhccccchhHHhhccCC---------cccCC-CHHHhcc-CcccchhhcCCCC-cCc
Confidence 22224577787777 4677787777777788888888766 45444 4444455 8999999999997 877
Q ss_pred eeeeeccccccCCccccCcccCeEEeecCCCcceeccCCCccccCCCcceeeeec
Q 046345 1260 VLHLEELNVDEEHFGPLFPTLLDLKLIDLPRLKRFCNFTENIIGLPELSNLTIEN 1314 (1462)
Q Consensus 1260 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~ 1314 (1462)
++.. .+.+|+.|.+.++++++.+|. +..+++|+.+++.+
T Consensus 217 lp~~------------~~~~L~~L~~l~~~~l~~lP~----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 217 LPSY------------GLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTY 255 (350)
T ss_dssp CCSS------------SCTTCCEEECTTCTTCCCCCC----TTTCCSCCEEECSC
T ss_pred cChh------------hhccchHhhhccCCCcCcCCC----chhCcChhhCcCCC
Confidence 6542 578899999999998988875 23478888888754
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=2e-12 Score=152.03 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=119.4
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhh-cCCcceEEEecCCCCCCCC-cccCCCCcCcEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFE-GTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTL 598 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~-~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L 598 (1462)
+.+...++.+..+|... .+.++.|++.+|. +..++...|. ++.+|++|+|++|.|+.+| ..|..+.+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNN------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSC------CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCC------CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 35667777777777632 3567888888776 5667766676 7888888888888888775 467888888888
Q ss_pred EecCcccCC--ccccccccCCcEEEecCCCCCcc-chhhccccccCEEccCCcccccccCcccc---ccccccceeeccC
Q 046345 599 CLHWCELED--IAIVGQLKKLEILSFRDSDIKEL-PLEIGLLTRLSLLDLSDCWSLEVIAPNVI---SKLSRLEELYMGG 672 (1462)
Q Consensus 599 ~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l---~~L~~L~~L~l~~ 672 (1462)
+|++|.++. +..|.++.+|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+|...+ .++++|++|++++
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC
Confidence 888888777 34577888888888888888866 456778888888888887 6777777655 5678888888877
Q ss_pred cccccccccCCCccchHhhhcCCC--CcEEEEEeec
Q 046345 673 SFSQWDKVEGGSNARLDELKELSK--LTTLEIHVRD 706 (1462)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~L~~l~~--L~~L~l~~~~ 706 (1462)
|.+.. -....+..++. ++.|++..|.
T Consensus 173 N~l~~--------l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 173 NKLKK--------LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCCCC--------CCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCCCc--------cCHHHhhhccHhhcceEEecCCC
Confidence 76532 12244555554 3556665543
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=5.2e-12 Score=140.77 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=128.9
Q ss_pred cCcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 518 EDPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
..++.+.+.++.+..++....+++|+.|++.+|. +..++. |.++++|++|++++|.++.+|.... .+|++
T Consensus 41 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~------i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ------ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC------CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred CcCcEEECcCCCcccchHHhhCCCCCEEECCCCc------cCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 3588999999999999877789999999999987 566666 8999999999999999999886444 99999
Q ss_pred EEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccc
Q 046345 598 LCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQ 676 (1462)
Q Consensus 598 L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 676 (1462)
|++++|.++.++.+.++++|++|++++|.++.+| .++.+++|++|++++| .+..+ ..+.++++|++|++++|...
T Consensus 111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcch--HHhccCCCCCEEeCCCCccc
Confidence 9999999999778999999999999999999997 6999999999999998 67777 33899999999999988753
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=3.2e-12 Score=132.06 Aligned_cols=136 Identities=22% Similarity=0.211 Sum_probs=79.0
Q ss_pred CcceEEEecCCCCC--CCCcccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCc-cchhhccccccCEEccC
Q 046345 570 EGLKVLDFTGIHFS--SLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKE-LPLEIGLLTRLSLLDLS 646 (1462)
Q Consensus 570 ~~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~ 646 (1462)
++|++|++++|.++ .+|..+..+++|++|++++|.++....++.+++|++|++++|.++. +|..+.++++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 55666666666665 5666666666666666666666555556666666666666666665 55555556666666666
Q ss_pred CcccccccCc-cccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCC
Q 046345 647 DCWSLEVIAP-NVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILP 711 (1462)
Q Consensus 647 ~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 711 (1462)
+| .+..+|. ..++++++|++|++++|.+.... ......+..+++|+.|+++.+.....+
T Consensus 104 ~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 104 GN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN-----DYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp SS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST-----THHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH-----HHHHHHHHhCccCcEecCCCCChhhcc
Confidence 65 4555442 23566666666666666442110 001134556666666666666554444
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=2.9e-12 Score=138.60 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=122.4
Q ss_pred eEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC--cccCCCCcCcEEEecCcccCC--ccccccccCCc
Q 046345 543 DLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP--SSLGRLTSLQTLCLHWCELED--IAIVGQLKKLE 618 (1462)
Q Consensus 543 r~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp--~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~ 618 (1462)
+++++.++. +..+|..+. ..+++|+|++|.++.++ ..|..+++|++|+|++|.++. +..|.++.+|+
T Consensus 14 ~~l~~s~n~------l~~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQK------LNKIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSC------CSSCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEeEeCCCC------cccCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 577777776 566776543 45689999999999874 348999999999999999988 45799999999
Q ss_pred EEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCC
Q 046345 619 ILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKL 697 (1462)
Q Consensus 619 ~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L 697 (1462)
+|++++|.++.+|.. +..+++|++|++++| .+..+++..+.++++|++|++++|.+.. ..+..+..+++|
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L 155 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITT--------VAPGAFDTLHSL 155 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCC--------BCTTTTTTCTTC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCE--------ECHHHhcCCCCC
Confidence 999999999988765 889999999999998 6888877779999999999999987632 223567889999
Q ss_pred cEEEEEeecc
Q 046345 698 TTLEIHVRDA 707 (1462)
Q Consensus 698 ~~L~l~~~~~ 707 (1462)
+.|+++.|..
T Consensus 156 ~~L~L~~N~l 165 (220)
T 2v70_A 156 STLNLLANPF 165 (220)
T ss_dssp CEEECCSCCE
T ss_pred CEEEecCcCC
Confidence 9999987764
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=4.5e-12 Score=138.13 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=120.8
Q ss_pred eEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEecCcccCC-c-cccccccCCcE
Q 046345 543 DLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHWCELED-I-AIVGQLKKLEI 619 (1462)
Q Consensus 543 r~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~ 619 (1462)
++++..++. +..+|..+ ..+|++|+|++|.+..+ |..|..+.+|++|+|++|.+.. + ..+.++.+|++
T Consensus 22 ~~v~c~~~~------l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 22 TTVDCRSKR------HASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp TEEECTTSC------CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEeEccCCC------cCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 455555554 56677654 37899999999999987 6789999999999999999988 3 56799999999
Q ss_pred EEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCc
Q 046345 620 LSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLT 698 (1462)
Q Consensus 620 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 698 (1462)
|+|++|.++.+|.. +..+++|++|++++| .+..+|.. +.++++|++|++++|.+... ....+..+++|+
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~ 162 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSI--------PHGAFDRLSSLT 162 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCC--------CTTTTTTCTTCC
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCcc--------CHHHHhCCCCCC
Confidence 99999999999876 578999999999998 68888877 79999999999999876321 124577889999
Q ss_pred EEEEEeeccc
Q 046345 699 TLEIHVRDAE 708 (1462)
Q Consensus 699 ~L~l~~~~~~ 708 (1462)
.|+++.|...
T Consensus 163 ~L~l~~N~~~ 172 (229)
T 3e6j_A 163 HAYLFGNPWD 172 (229)
T ss_dssp EEECTTSCBC
T ss_pred EEEeeCCCcc
Confidence 9999877653
No 115
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=3.8e-12 Score=146.28 Aligned_cols=192 Identities=18% Similarity=0.115 Sum_probs=141.9
Q ss_pred cCcEEEEccCCCCccC-Ccc---CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCC
Q 046345 518 EDPIAISLPHRDIEVL-PER---LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRL 592 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l-~~~---~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L 592 (1462)
..++++.+.++.+... |.. ..+++|++|++.+|..... ...++...+..+++|++|+|++|.+..+| ..++.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG--RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST--TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch--hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3588999999888653 333 4588999999999874211 11122233457999999999999998775 678999
Q ss_pred CcCcEEEecCcccCC------ccccccccCCcEEEecCCCCCccchh----hccccccCEEccCCccccccc-Ccccccc
Q 046345 593 TSLQTLCLHWCELED------IAIVGQLKKLEILSFRDSDIKELPLE----IGLLTRLSLLDLSDCWSLEVI-APNVISK 661 (1462)
Q Consensus 593 ~~Lr~L~L~~~~l~~------~~~i~~L~~L~~L~L~~~~i~~lp~~----i~~L~~L~~L~L~~~~~l~~~-p~~~l~~ 661 (1462)
++|++|+|++|.+.. ...++++++|++|++++|+++.+|.. ++.+++|++|++++| .+... |+. ++.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~ 246 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPS-APR 246 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSC-CSS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhh-HHh
Confidence 999999999998653 23347899999999999999877763 578899999999998 56666 544 666
Q ss_pred c---cccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEE
Q 046345 662 L---SRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRI 724 (1462)
Q Consensus 662 L---~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i 724 (1462)
+ ++|++|++++|.+... +..+ .++|+.|+++.|.+..++....+++|+.|.+
T Consensus 247 ~~~~~~L~~L~Ls~N~l~~l---------p~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLEQV---------PKGL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp CCCCTTCCCEECCSSCCCSC---------CSCC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred ccCcCcCCEEECCCCCCCch---------hhhh--cCCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence 6 6999999999876421 1222 2689999999998887655445555665544
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=4.2e-12 Score=149.25 Aligned_cols=151 Identities=23% Similarity=0.295 Sum_probs=133.4
Q ss_pred cCcEEEEccCCCCccCCcc--C-CCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCC
Q 046345 518 EDPIAISLPHRDIEVLPER--L-QCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLT 593 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~--~-~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~ 593 (1462)
..++.+.+.+|.+..++.. . .+++|++|++.+|. +..++...|.++++|++|+|++|.++.+|. .|..+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH------LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc------CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence 3588999999999988765 2 78999999999987 677888889999999999999999998865 689999
Q ss_pred cCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchhh----ccccccCEEccCCcccccccCccccccccc--c
Q 046345 594 SLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLEI----GLLTRLSLLDLSDCWSLEVIAPNVISKLSR--L 665 (1462)
Q Consensus 594 ~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~i----~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~--L 665 (1462)
+|++|+|++|.+.. +..|.++.+|++|+|++|.++.+|..+ ..+++|++|+|++| .+..+|...+..+.+ |
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHH
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhc
Confidence 99999999999987 678999999999999999999999876 67999999999998 788998777888887 4
Q ss_pred ceeeccCccc
Q 046345 666 EELYMGGSFS 675 (1462)
Q Consensus 666 ~~L~l~~~~~ 675 (1462)
+.|++.+|..
T Consensus 192 ~~l~l~~N~~ 201 (361)
T 2xot_A 192 NGLYLHNNPL 201 (361)
T ss_dssp TTEECCSSCE
T ss_pred ceEEecCCCc
Confidence 8999998865
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=6.4e-12 Score=129.78 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=101.5
Q ss_pred CCcceEEEEeecCCCCCcccc--ccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--ccccccc
Q 046345 539 CPRLDLFLLFTKGDGSFPISM--QMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IAIVGQL 614 (1462)
Q Consensus 539 ~~~Lr~L~l~~~~~~~~~~~~--~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L 614 (1462)
.++|+.|++.+|. +. .+|.. |..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. |..+.++
T Consensus 23 ~~~L~~L~l~~n~------l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCK------SNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCB------CBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCC------CChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 3667778777776 33 55544 67888889999999888877 778888899999999988887 4555668
Q ss_pred cCCcEEEecCCCCCccc--hhhccccccCEEccCCcccccccCc---cccccccccceeeccCccc
Q 046345 615 KKLEILSFRDSDIKELP--LEIGLLTRLSLLDLSDCWSLEVIAP---NVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 615 ~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~~p~---~~l~~L~~L~~L~l~~~~~ 675 (1462)
++|++|++++|.++.+| ..+..+++|++|++++| .+..+|+ ..+..+++|++|++.+|..
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 89999999999888876 67888889999999887 6777776 4578888999998887754
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=1.6e-12 Score=154.83 Aligned_cols=182 Identities=15% Similarity=0.096 Sum_probs=101.9
Q ss_pred CcEEEEccCCCCccC-----Cc-cCCCCcceEEEEeecCCCCCccccccChhh------hhcCCcceEEEecCCCCCC--
Q 046345 519 DPIAISLPHRDIEVL-----PE-RLQCPRLDLFLLFTKGDGSFPISMQMSDLF------FEGTEGLKVLDFTGIHFSS-- 584 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l-----~~-~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~------f~~l~~Lr~L~Ls~~~i~~-- 584 (1462)
.++++.+.++.+... +. ...+++|++|++.++....+ ...+|..+ |..+++|++|+|++|.+..
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l--~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV--KDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC--GGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcc--ccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 466677766655431 11 12466777777766542111 11233322 3566777777777777664
Q ss_pred ---CCcccCCCCcCcEEEecCcccCC--cc----ccccc---------cCCcEEEecCCCCC--ccc---hhhccccccC
Q 046345 585 ---LPSSLGRLTSLQTLCLHWCELED--IA----IVGQL---------KKLEILSFRDSDIK--ELP---LEIGLLTRLS 641 (1462)
Q Consensus 585 ---lp~~i~~L~~Lr~L~L~~~~l~~--~~----~i~~L---------~~L~~L~L~~~~i~--~lp---~~i~~L~~L~ 641 (1462)
+|..+..+++|++|+|++|.+.. +. .+..+ ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 56666677777777777777653 22 23333 67777777777665 344 3555667777
Q ss_pred EEccCCcccccc-----cCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecc
Q 046345 642 LLDLSDCWSLEV-----IAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDA 707 (1462)
Q Consensus 642 ~L~L~~~~~l~~-----~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 707 (1462)
+|++++| .+.. +.+..+.++++|++|++++|.+.... ....+..+..+++|+.|+++.|.+
T Consensus 191 ~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 191 TVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp EEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCC
T ss_pred EEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----HHHHHHHHccCCCcCEEECCCCCC
Confidence 7777776 3431 12212666777777777666542100 012334556666777776665543
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=6.8e-12 Score=134.83 Aligned_cols=144 Identities=19% Similarity=0.224 Sum_probs=124.5
Q ss_pred cCcEEEEccCCCCccCCcc--CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCc
Q 046345 518 EDPIAISLPHRDIEVLPER--LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTS 594 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~ 594 (1462)
..++++.+.++.+..++.. ..+++|++|++.+|. +..++...|..+++|++|++++|.++.+|. .+..+++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK------LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc------cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 3689999999999988764 478999999999987 577888889999999999999999999876 4799999
Q ss_pred CcEEEecCcccCC-c-cccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccceeecc
Q 046345 595 LQTLCLHWCELED-I-AIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMG 671 (1462)
Q Consensus 595 Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 671 (1462)
|++|++++|.++. + ..+.++++|++|++++|.++.+|.. +.++++|++|++++|. + .+.+++|+.|++.
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCTCPGIRYLSEW 173 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCCTTTTHHHHHH
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecCCCCHHHHHHH
Confidence 9999999999988 3 4589999999999999999998876 7889999999999983 2 3556788888877
Q ss_pred Cccc
Q 046345 672 GSFS 675 (1462)
Q Consensus 672 ~~~~ 675 (1462)
.+..
T Consensus 174 ~n~~ 177 (208)
T 2o6s_A 174 INKH 177 (208)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 6654
No 120
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.27 E-value=3.1e-12 Score=147.06 Aligned_cols=193 Identities=13% Similarity=0.066 Sum_probs=113.0
Q ss_pred cEEEEccCCCCcc-----CCccCCCCcceEEEEeecCCCCCccccccChhhh-hcCCcceEEEecCCCCCC-CC----cc
Q 046345 520 PIAISLPHRDIEV-----LPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFF-EGTEGLKVLDFTGIHFSS-LP----SS 588 (1462)
Q Consensus 520 ~r~lsl~~~~~~~-----l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f-~~l~~Lr~L~Ls~~~i~~-lp----~~ 588 (1462)
++++.+....+.. +.....+++|+.|++.+|.. ....|..++ ..+++|++|+|++|.+.. .| ..
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-----TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-----BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-----ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 5556555544421 11223345677777777763 223444433 667777777777777764 22 23
Q ss_pred cCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCc---cchh--hccccccCEEccCCcccccccCcc---c
Q 046345 589 LGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKE---LPLE--IGLLTRLSLLDLSDCWSLEVIAPN---V 658 (1462)
Q Consensus 589 i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~---lp~~--i~~L~~L~~L~L~~~~~l~~~p~~---~ 658 (1462)
+..+++|++|+|++|.+.. +..++++++|++|++++|++.. +|.. ++++++|++|++++| .++.++.. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHH
Confidence 4567777777777777766 4567777777777777777643 3322 356777777777776 45544432 2
Q ss_pred cccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCccccccccceeEE
Q 046345 659 ISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQDLVFMELERYRI 724 (1462)
Q Consensus 659 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i 724 (1462)
++++++|++|++++|.+....+ ..+..+..+++|++|+++.|.+..+|.... .+|+.|.+
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~L 279 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVN-----PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDL 279 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCC-----SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEEC
T ss_pred HhcCCCCCEEECCCCCCCccch-----hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEEC
Confidence 4566777777777776532111 111222223577777777777776655432 45555554
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=3.7e-12 Score=149.94 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=52.6
Q ss_pred hhcCCcceEEEecCCCCCCCC-----cccCCCC-cCcEEEecCcccCC--ccccccc-----cCCcEEEecCCCCCccch
Q 046345 566 FEGTEGLKVLDFTGIHFSSLP-----SSLGRLT-SLQTLCLHWCELED--IAIVGQL-----KKLEILSFRDSDIKELPL 632 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~lp-----~~i~~L~-~Lr~L~L~~~~l~~--~~~i~~L-----~~L~~L~L~~~~i~~lp~ 632 (1462)
+...++|++|||++|.++..+ ..+.+++ +|++|+|++|.+.. +..+..+ .+|++|++++|.++..+.
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 334444555555555555443 3444555 55555555555544 3344443 555555555555553322
Q ss_pred -h----hccc-cccCEEccCCcccccccCcccccc-----ccccceeeccCccc
Q 046345 633 -E----IGLL-TRLSLLDLSDCWSLEVIAPNVISK-----LSRLEELYMGGSFS 675 (1462)
Q Consensus 633 -~----i~~L-~~L~~L~L~~~~~l~~~p~~~l~~-----L~~L~~L~l~~~~~ 675 (1462)
. +..+ ++|++|++++| .+...+...+.. .++|++|++++|.+
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 2 2222 55555555555 344444322222 13555555555543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=5.1e-12 Score=127.47 Aligned_cols=103 Identities=24% Similarity=0.319 Sum_probs=47.5
Q ss_pred hhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccc--hhhccccccC
Q 046345 566 FEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELP--LEIGLLTRLS 641 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~ 641 (1462)
|..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..++++++|++|++++|.++.+| ..++.+++|+
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 34444455555555544444 344444455555555554444 233334445555555555444433 3444445555
Q ss_pred EEccCCcccccccCc---cccccccccceeec
Q 046345 642 LLDLSDCWSLEVIAP---NVISKLSRLEELYM 670 (1462)
Q Consensus 642 ~L~L~~~~~l~~~p~---~~l~~L~~L~~L~l 670 (1462)
+|++++| .+..+|+ ..++.+++|++|++
T Consensus 117 ~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 117 SLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 5555444 3444433 23444444444443
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=2.1e-11 Score=149.76 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=135.3
Q ss_pred cCcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 518 EDPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
..++.+.+.++.+..+|... +++|++|++.+|. +..+| ..+++|++|++++|.++.+|. +.. +|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~------l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~ 124 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNA------LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKH 124 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSC------CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCE
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCC------Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCE
Confidence 36889999999999888754 5899999999987 45677 347899999999999999998 766 9999
Q ss_pred EEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCccccc
Q 046345 598 LCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQW 677 (1462)
Q Consensus 598 L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 677 (1462)
|+|++|.++.++. .+++|++|++++|.++.+|. .+++|++|++++| .+..+|. +. ++|++|++++|.+..
T Consensus 125 L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 125 LDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp EECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred EECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCCc
Confidence 9999999988333 78999999999999999987 6899999999998 6888877 55 899999999987642
Q ss_pred ccccCCCccchHhh-hcCCCCcEEEEEeecccCCCcc-ccccccceeE
Q 046345 678 DKVEGGSNARLDEL-KELSKLTTLEIHVRDAEILPQD-LVFMELERYR 723 (1462)
Q Consensus 678 ~~~~~~~~~~~~~L-~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~ 723 (1462)
... ....| .....|+.|+++.|.+..+|.. ..+.+|+.|.
T Consensus 195 lp~------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 195 LPA------VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTII 236 (571)
T ss_dssp CCC------CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEE
T ss_pred hhh------HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEE
Confidence 111 01111 1123349999999988887764 2344444443
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=1.4e-11 Score=130.00 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=83.1
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccch-hh
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPL-EI 634 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~-~i 634 (1462)
+..+|..++ +.|++|++++|.|+.+|..|..+.+|++|+|++|.++. +..|.++.+|++|+|++|.++.+|. .+
T Consensus 22 l~~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 22 LKVLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp CSSCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCcCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh
Confidence 345554432 46777788888777777777777788888888877776 3567778888888888887777765 46
Q ss_pred ccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 635 GLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
..+++|++|++++| .+..+|+..+..+++|++|++++|..
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 99 DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 77788888888876 57777776677778888887777654
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=4.7e-12 Score=131.78 Aligned_cols=128 Identities=16% Similarity=0.098 Sum_probs=69.4
Q ss_pred CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-ccc-cccc
Q 046345 537 LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IAI-VGQL 614 (1462)
Q Consensus 537 ~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~-i~~L 614 (1462)
..+++|+.|++.+|. +..++. +....++|++|++++|.++.+ ..+..+++|++|++++|.++. |+. ++.+
T Consensus 16 ~~~~~L~~L~l~~n~------l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK------IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp ECTTSCEEEECTTSC------CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CCcCCceEEEeeCCC------CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 445555666655554 233322 222223566666666666555 455666666666666666655 322 3566
Q ss_pred cCCcEEEecCCCCCccch--hhccccccCEEccCCcccccccCcc---ccccccccceeeccCc
Q 046345 615 KKLEILSFRDSDIKELPL--EIGLLTRLSLLDLSDCWSLEVIAPN---VISKLSRLEELYMGGS 673 (1462)
Q Consensus 615 ~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~~---~l~~L~~L~~L~l~~~ 673 (1462)
++|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. .++.+++|++|+++++
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 666666666666665554 5556666666666665 34444432 2455555665555544
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=1.1e-11 Score=158.84 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=101.4
Q ss_pred CcEEEEccCCCCccCCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 519 DPIAISLPHRDIEVLPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
.++++.+.++.+...+.. ....+|+.+.+...... .+ ...++...|..+..|++|+|++|.+..+|..+..+.+|++
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~-~n-~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDI-EN-RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCcccc-cc-ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 478888887777765543 23344444443322110 00 1235667789999999999999999999999999999999
Q ss_pred EEecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccccceeeccCcccc
Q 046345 598 LCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQ 676 (1462)
Q Consensus 598 L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 676 (1462)
|+|++|.++. |..|++|.+|++|+|++|.|+.+|..+++|++|++|+|++| .+..+|.. |++|++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 9999999998 78899999999999999999999999999999999999998 78899887 999999999999998763
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=9.5e-12 Score=125.51 Aligned_cols=130 Identities=22% Similarity=0.188 Sum_probs=109.1
Q ss_pred cCCcceEEEecCCCCC--CCCcccCCCCcCcEEEecCcccCCccccccccCCcEEEecCCCCCc-cchhhccccccCEEc
Q 046345 568 GTEGLKVLDFTGIHFS--SLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKE-LPLEIGLLTRLSLLD 644 (1462)
Q Consensus 568 ~l~~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~ 644 (1462)
..++|+.|++++|.++ .+|..+..+++|++|++++|.+.....++++++|++|++++|.++. +|..++.+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3478999999999998 8999999999999999999999888889999999999999999997 888888899999999
Q ss_pred cCCcccccccC-ccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEE
Q 046345 645 LSDCWSLEVIA-PNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIH 703 (1462)
Q Consensus 645 L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~ 703 (1462)
+++| .+..++ +..++++++|++|++++|.+.... ......++.+++|+.|+++
T Consensus 95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLN-----DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGST-----THHHHHHHHCTTCCEETTB
T ss_pred CCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchH-----HHHHHHHHHCCCcccccCC
Confidence 9998 577765 244899999999999998763211 0112467888999988653
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.24 E-value=3.8e-12 Score=151.59 Aligned_cols=137 Identities=14% Similarity=0.095 Sum_probs=74.3
Q ss_pred hhcCCcceEEEecCCCCCC-----CCcccCCCCcCcEEEecCcccCC-----ccc-------cccccCCcEEEecCCCCC
Q 046345 566 FEGTEGLKVLDFTGIHFSS-----LPSSLGRLTSLQTLCLHWCELED-----IAI-------VGQLKKLEILSFRDSDIK 628 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~Lr~L~L~~~~l~~-----~~~-------i~~L~~L~~L~L~~~~i~ 628 (1462)
+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+.. |.. +.++++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4556666666666666653 33345566666666666654331 222 356666677777666665
Q ss_pred c-----cchhhccccccCEEccCCcccccccCccc----cccc---------cccceeeccCcccccccccCCCccchHh
Q 046345 629 E-----LPLEIGLLTRLSLLDLSDCWSLEVIAPNV----ISKL---------SRLEELYMGGSFSQWDKVEGGSNARLDE 690 (1462)
Q Consensus 629 ~-----lp~~i~~L~~L~~L~L~~~~~l~~~p~~~----l~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 690 (1462)
. +|..+.++++|++|++++| .+...+... +..+ ++|++|++++|.+.... .......
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~~ 182 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS----MKEWAKT 182 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG----HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH----HHHHHHH
Confidence 4 5566666666777776666 333222111 2223 66666666666542100 0011134
Q ss_pred hhcCCCCcEEEEEeecc
Q 046345 691 LKELSKLTTLEIHVRDA 707 (1462)
Q Consensus 691 L~~l~~L~~L~l~~~~~ 707 (1462)
+..+++|+.|+++.|.+
T Consensus 183 l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp HHHCTTCCEEECCSSCC
T ss_pred HHhCCCcCEEECcCCCC
Confidence 55666666666665544
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=1.6e-11 Score=129.54 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=57.8
Q ss_pred cceEEEecCCCCCCCCcc--cCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchh-hccccccCEEcc
Q 046345 571 GLKVLDFTGIHFSSLPSS--LGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDL 645 (1462)
Q Consensus 571 ~Lr~L~Ls~~~i~~lp~~--i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 645 (1462)
.|++|++++|.++.+|.. ++.+++|++|+|++|.++. |..|.++.+|++|++++|.++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455556666655555432 5555566666666665555 34555566666666666655555433 455566666666
Q ss_pred CCcccccccCccccccccccceeeccCccc
Q 046345 646 SDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 646 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
++| .+..+++..++.+++|++|++++|..
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 655 44444444455566666666555543
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.18 E-value=6.5e-11 Score=145.41 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=132.1
Q ss_pred cCcEEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcE
Q 046345 518 EDPIAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQT 597 (1462)
Q Consensus 518 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 597 (1462)
..++.+.+.+|.+..+| ..+++|++|++.+|. +..+|. |.+ +|++|+|++|.++.+|. .+.+|++
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~------l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~ 144 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDNR------LSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEY 144 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSC------CSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCE
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCCC------CCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccE
Confidence 46899999999999998 558999999999997 456776 443 89999999999999998 6899999
Q ss_pred EEecCcccCCccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcccccccCcccccccccc-------ceeec
Q 046345 598 LCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRL-------EELYM 670 (1462)
Q Consensus 598 L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L-------~~L~l 670 (1462)
|++++|.++.++. .+++|++|++++|.++.+|. +. ++|++|++++| .++.+|. +.. +| ++|++
T Consensus 145 L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 145 INADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp EECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC----------CCEEEEC
T ss_pred EeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh--HHH--hhhcccccceEEec
Confidence 9999999998333 68899999999999999998 66 99999999998 7888887 444 67 99999
Q ss_pred cCcccccccccCCCccchHhhhcCCCCcEEEEEeecccC
Q 046345 671 GGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEI 709 (1462)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 709 (1462)
++|.+. ..+..+..+++|+.|+++.|.+..
T Consensus 215 s~N~l~---------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 215 RENRIT---------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CSSCCC---------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCcce---------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 998764 234567779999999999887653
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3.3e-11 Score=125.29 Aligned_cols=136 Identities=17% Similarity=0.215 Sum_probs=113.4
Q ss_pred hhcCCcceEEEecCCCCCCCCcccCCCC-cCcEEEecCcccCCccccccccCCcEEEecCCCCCccchhh-ccccccCEE
Q 046345 566 FEGTEGLKVLDFTGIHFSSLPSSLGRLT-SLQTLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPLEI-GLLTRLSLL 643 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~-~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L 643 (1462)
|..+.+|++|++++|.++.+|. +..+. +|++|++++|.++....++++++|++|++++|.++.+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 5678899999999999999865 55555 99999999999998888999999999999999999998766 899999999
Q ss_pred ccCCcccccccCc-cccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeeccc
Q 046345 644 DLSDCWSLEVIAP-NVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAE 708 (1462)
Q Consensus 644 ~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 708 (1462)
++++| .+..+|. ..++++++|++|++++|.+.... ......+..+++|+.|+++.+...
T Consensus 94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~-----~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKK-----HYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGST-----THHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcH-----hHHHHHHHHCCccceeCCCcCCHH
Confidence 99998 6788876 34899999999999998763211 111234788999999999877543
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.17 E-value=5.3e-11 Score=125.54 Aligned_cols=125 Identities=18% Similarity=0.272 Sum_probs=108.6
Q ss_pred eEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-cc--ccccccCCcEEEecCCCCCcc-chhhccccccCEEccCCc
Q 046345 573 KVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IA--IVGQLKKLEILSFRDSDIKEL-PLEIGLLTRLSLLDLSDC 648 (1462)
Q Consensus 573 r~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~--~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~ 648 (1462)
++++++++.++.+|..+.. +|++|++++|.+.. +. .++++++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999987755 99999999999988 43 489999999999999999987 678999999999999998
Q ss_pred ccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeeccc
Q 046345 649 WSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAE 708 (1462)
Q Consensus 649 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 708 (1462)
.+..+++..++++++|++|++++|.+.. ..+..+..+++|+.|+++.|...
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQISC--------VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCCE--------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCCe--------eCHHHhhcCCCCCEEEeCCCCcc
Confidence 7888888879999999999999997632 23456788999999999877653
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.16 E-value=1.4e-11 Score=144.89 Aligned_cols=127 Identities=14% Similarity=0.192 Sum_probs=59.5
Q ss_pred ceEEEEeecCCCCCccccccCh----hhhhcCC-cceEEEecCCCCCCC-CcccCCC-----CcCcEEEecCcccCC--c
Q 046345 542 LDLFLLFTKGDGSFPISMQMSD----LFFEGTE-GLKVLDFTGIHFSSL-PSSLGRL-----TSLQTLCLHWCELED--I 608 (1462)
Q Consensus 542 Lr~L~l~~~~~~~~~~~~~l~~----~~f~~l~-~Lr~L~Ls~~~i~~l-p~~i~~L-----~~Lr~L~L~~~~l~~--~ 608 (1462)
|+.|++.+|. +...+. ..|.+++ +|++|+|++|.++.. +..+..+ .+|++|+|++|.+.. +
T Consensus 24 L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 24 VTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 5555555554 333333 3445555 566666666555543 3333333 556666666655543 2
Q ss_pred cc----cccc-cCCcEEEecCCCCCccch-h----hcc-ccccCEEccCCcccccccCcc----cccccc-ccceeeccC
Q 046345 609 AI----VGQL-KKLEILSFRDSDIKELPL-E----IGL-LTRLSLLDLSDCWSLEVIAPN----VISKLS-RLEELYMGG 672 (1462)
Q Consensus 609 ~~----i~~L-~~L~~L~L~~~~i~~lp~-~----i~~-L~~L~~L~L~~~~~l~~~p~~----~l~~L~-~L~~L~l~~ 672 (1462)
.. +..+ ++|++|++++|.++..+. . +.. .++|++|++++| .+...... .+..+. +|++|++++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 22 2222 555666666555554432 1 122 245566666555 33321111 123333 555666555
Q ss_pred ccc
Q 046345 673 SFS 675 (1462)
Q Consensus 673 ~~~ 675 (1462)
|.+
T Consensus 177 n~l 179 (362)
T 3goz_A 177 NNL 179 (362)
T ss_dssp SCG
T ss_pred CCC
Confidence 543
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.15 E-value=2.4e-09 Score=127.42 Aligned_cols=286 Identities=13% Similarity=0.075 Sum_probs=172.1
Q ss_pred cccchhHHHHHHHHHHhc----cCCceEEEEEecCCCcHHHHHHHHHHHHhhcc----C--CCeEEEEEecCCC-CHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK----S--FDKVVMAEVTQTP-DHQKI 225 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~--f~~~~wv~~~~~~-~~~~~ 225 (1462)
..++||+++++.+..++. .+..+.+.|+|++|+||||+|+.+++...... . ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 568999999999887765 34456899999999999999999999874321 1 3457888887766 88888
Q ss_pred HHHHHHHh-CCCCCC-CcChHHHHHHHHHHHHccCcEEEEEcCCcccccc--cccCCCCccccccccCCCCCcEEEEEec
Q 046345 226 QDKLAFDL-GMEFGL-NENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL--DVVGIPYGDVEKERKDDESGCTIILTSR 301 (1462)
Q Consensus 226 ~~~i~~~l-~~~~~~-~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--~~~~~~~~~l~~~~~~~~~gs~IlvTtr 301 (1462)
+..++..+ +..... .....+....+...+. .++.+||+||++..... ... .+..+.+ .. .+..||+||+
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~~~--~l~~l~~---~~-~~~~iI~~t~ 172 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGGDI--VLYQLLR---SD-ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTSHH--HHHHHHT---SS-SCEEEEEECS
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCCce--eHHHHhc---CC-cceEEEEEEC
Confidence 88888877 332221 2223445556666664 44449999999875321 111 0001111 12 5778999998
Q ss_pred chhhh----hhc-cCCCceEEccCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHcc---CCch-HHHHHHHHH--h
Q 046345 302 NRDLL----EKD-MKSQKNFLIEVLSKDEALQLFECIVGD-SAKTSAIQPIADEIVERCE---GLPV-ALSTIANAL--K 369 (1462)
Q Consensus 302 ~~~v~----~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPl-ai~~~~~~l--~ 369 (1462)
..... ... ..-...+++.+++.++..+++..++.. -....-..+..+.|++.++ |.|. |+..+.... .
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 75321 111 111238999999999999999987631 1112223567788999998 8887 444433322 1
Q ss_pred ---cC-CHHHHHHHHHHHhcCccccccchhhHHHHHHHHhhhccChHHHHHHHHHhcccCCCcccChhHHHHH--Hhccc
Q 046345 370 ---SK-SLDFWKDALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFLLCGLYSEGHAIQVPSLLRY--GMGLC 443 (1462)
Q Consensus 370 ---~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~fp~~~~i~~~~Li~~--W~a~g 443 (1462)
.. +.+.+..++++.. ...+..++..|++ +.+..+..++....+ .++.+. -+++.
T Consensus 253 ~~~~~i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~-~~~~~l~al~~~~~~-----~~~~~~~~~~~~~ 312 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE--------------QERLIEAVKALPF-HYKLALRSLIESEDV-----MSAHKMYTDLCNK 312 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH--------------HHHHHHHHHSSCH-HHHHHHHHHHTCCBH-----HHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHh--------------cchHHHHHHcCCH-HHHHHHHHHHHhccc-----ChHHHHHHHHHHH
Confidence 12 6677776665432 1345667788885 445555555541110 111110 11111
Q ss_pred cccccccHHHHHHHHHHHHHHHHHcccccc
Q 046345 444 LFENVYKLEEARSRVHTLIDILKASCLLSD 473 (1462)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 473 (1462)
+-....+ ...+.++++.|...++++.
T Consensus 313 ~g~~~~~----~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 313 FKQKPLS----YRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp TTCCCCC----HHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCC----HHHHHHHHHHHHhCCCEEE
Confidence 1001111 2345667888999999864
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=1.6e-10 Score=121.69 Aligned_cols=121 Identities=22% Similarity=0.285 Sum_probs=106.8
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCC-cccCCCCcCcEEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLP-SSLGRLTSLQTLC 599 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~ 599 (1462)
+.+...++.+..+|... .++++.|++.+|. +..+| ..|.++++|++|+|++|.|+.++ ..|..+.+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~------i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQ------FTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSC------CCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCc------CchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 45778888888888653 4799999999987 56777 45899999999999999999986 4799999999999
Q ss_pred ecCcccCC--ccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCcc
Q 046345 600 LHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCW 649 (1462)
Q Consensus 600 L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 649 (1462)
|++|.++. +..|.++++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 99999998 46799999999999999999999875 7889999999999984
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.13 E-value=3.1e-09 Score=126.72 Aligned_cols=304 Identities=13% Similarity=0.122 Sum_probs=181.1
Q ss_pred cccchhHHHHHHHHHHhc----cCCceEEEEEecCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEecCCCCHHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK----SFDKVVMAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~ 228 (1462)
..++||+++++.+..++. .+..+.+.|+|++|+||||+|+.+++...... .-..++|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 568999999999999884 24566899999999999999999999874321 1234678888888888899999
Q ss_pred HHHHhCCCCCCC-cChHHHHHHHHHHHHc-cCcEEEEEcCCcccccc----cccCCCCccccccccCC--CCCcEEEEEe
Q 046345 229 LAFDLGMEFGLN-ENTFQKAYRLCERLKK-EKKVLIILDNIWTKLEL----DVVGIPYGDVEKERKDD--ESGCTIILTS 300 (1462)
Q Consensus 229 i~~~l~~~~~~~-~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~----~~~~~~~~~l~~~~~~~--~~gs~IlvTt 300 (1462)
++.+++...... ....+....+...+.. +++.+||+||++..... +.+.. +.+..... ..+..+|+||
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~----l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYR----ITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHH----HHHGGGCC-----CEEEEEC
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHh----HhhchhhcCCCceEEEEEEE
Confidence 999987654322 2234445556665533 56889999999875322 11110 11100001 3466788888
Q ss_pred cchhhh----hhccCCC--ceEEccCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHcc---CCchHH-HHHHHHHh
Q 046345 301 RNRDLL----EKDMKSQ--KNFLIEVLSKDEALQLFECIVGD-SAKTSAIQPIADEIVERCE---GLPVAL-STIANALK 369 (1462)
Q Consensus 301 r~~~v~----~~~~~~~--~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPlai-~~~~~~l~ 369 (1462)
+..... ....... ..+.+.+++.++..+++...+.. .....-..+..+.+++.++ |.|..+ .++.....
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 765321 1111122 47899999999999999887631 0111222456778888888 999433 33222221
Q ss_pred -----c--C-CHHHHHHHHHHHhcCccccccchhhHHHHHHHHhhhccChHHHHHHHHHhc-ccCCCcccChhHHHHHHh
Q 046345 370 -----S--K-SLDFWKDALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFLLCG-LYSEGHAIQVPSLLRYGM 440 (1462)
Q Consensus 370 -----~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a-~fp~~~~i~~~~Li~~W~ 440 (1462)
+ . +.+.+..++.... ...+.-++..+++ +.+..+..++ ++.....+....+.+...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 5566666655432 1235567788886 4455554444 343222455554444321
Q ss_pred c----cccccccccHHHHHHHHHHHHHHHHHccccccC----CCCCcEEEcch
Q 046345 441 G----LCLFENVYKLEEARSRVHTLIDILKASCLLSDG----DAEDEVKMHDI 485 (1462)
Q Consensus 441 a----~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----~~~~~~~mH~l 485 (1462)
. .| . ... ....+.++++.|...++++.. +..+.|+.+.+
T Consensus 320 ~~~~~~~-~-~~~----~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l 366 (387)
T 2v1u_A 320 ELTSTLG-L-EHV----TLRRVSGIISELDMLGIVKSRVVSRGRYGKTREVSL 366 (387)
T ss_dssp HHHHHTT-C-CCC----CHHHHHHHHHHHHHTTSEEEEEEECGGGCEEEEEEE
T ss_pred HHHHhcC-C-CCC----CHHHHHHHHHHHHhCCCeEEEeecCCCCCceeEEEe
Confidence 1 11 0 111 123456678889999998642 23444544433
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=3.6e-11 Score=153.96 Aligned_cols=131 Identities=22% Similarity=0.253 Sum_probs=109.8
Q ss_pred CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-cccccccc
Q 046345 537 LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IAIVGQLK 615 (1462)
Q Consensus 537 ~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~ 615 (1462)
..+++|+.|++.+|. +..+|..+| ++++|++|+|++|.|+.+|.+|+.|.+|++|+|++|.++. |..|++|.
T Consensus 221 ~~l~~L~~L~Ls~n~------l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ------IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -CCCCCCEEECTTSC------CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred ccCCCCcEEECCCCC------CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 467899999999887 567888876 8999999999999999999999999999999999999998 88999999
Q ss_pred CCcEEEecCCCCCccchhhccccccCEEccCCcccccccCccccccccc-cceeeccCccc
Q 046345 616 KLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSR-LEELYMGGSFS 675 (1462)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~-L~~L~l~~~~~ 675 (1462)
+|++|+|++|.++.+|..+++|++|++|+|++| .+...++..+..+.. +..|++.+|..
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCChHHHhhcchhhhHHhhccCcc
Confidence 999999999999999999999999999999998 566555554544322 22355555544
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.09 E-value=1.8e-09 Score=128.63 Aligned_cols=297 Identities=14% Similarity=0.096 Sum_probs=171.3
Q ss_pred cccchhHHHHHHHHHHhc----cCCceEEEEEecCCCcHHHHHHHHHHHHhhccC-CCeEEEEEecCCCCHHHHHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS-FDKVVMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~ 231 (1462)
..|+||+++++.+..++. .+..+.+.|+|++|+||||||+.+++....... -..++|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999998887 345568999999999999999999998753221 235788887776777788888888
Q ss_pred HhCCCCCCC-cChHHHHHHHHHHHHc-cCcEEEEEcCCcccccccccCCCCccccccccC-CCCCcEEEEEecchhhhhh
Q 046345 232 DLGMEFGLN-ENTFQKAYRLCERLKK-EKKVLIILDNIWTKLELDVVGIPYGDVEKERKD-DESGCTIILTSRNRDLLEK 308 (1462)
Q Consensus 232 ~l~~~~~~~-~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~-~~~gs~IlvTtr~~~v~~~ 308 (1462)
.++...... ....+....+.+.+.. +++.+||+||++...+.... ..+..+.+.... ...+..+|+||+.......
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-DILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-THHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-HHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 776543321 2233445555555543 45899999999775322100 000111111100 2335667888886643210
Q ss_pred ----c--cCCCceEEccCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHcc---CCchHHHH-HHHHHh-----c--
Q 046345 309 ----D--MKSQKNFLIEVLSKDEALQLFECIVGD-SAKTSAIQPIADEIVERCE---GLPVALST-IANALK-----S-- 370 (1462)
Q Consensus 309 ----~--~~~~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPlai~~-~~~~l~-----~-- 370 (1462)
. .-....+++.+++.++..+++...+.. .....-..++.+.+++.++ |.|..+.. +..... +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 0 111258999999999999999886531 1112234567788888888 99984433 222211 1
Q ss_pred C-CHHHHHHHHHHHhcCccccccchhhHHHHHHHHhhhccChHHHHHHHHHhcccCC-C-cccChhHHHHHHh--ccccc
Q 046345 371 K-SLDFWKDALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFLLCGLYSE-G-HAIQVPSLLRYGM--GLCLF 445 (1462)
Q Consensus 371 ~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~fp~-~-~~i~~~~Li~~W~--a~g~~ 445 (1462)
. +.+.+..++.... ...+.-.+..+|+ ..+..+..++...+ + ..+....+.+.+. ++.+-
T Consensus 259 ~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE--------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp SCCHHHHHHHHHHHH--------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHh--------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 1 4555555544321 2345566778885 44555555543211 1 1233333322211 11000
Q ss_pred cccccHHHHHHHHHHHHHHHHHcccccc
Q 046345 446 ENVYKLEEARSRVHTLIDILKASCLLSD 473 (1462)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 473 (1462)
....+ ...+..+++.|...++++.
T Consensus 324 ~~~~~----~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 VEAVT----QRRVSDIINELDMVGILTA 347 (386)
T ss_dssp CCCCC----HHHHHHHHHHHHHHTSEEE
T ss_pred CCCCC----HHHHHHHHHHHHhCCCEEE
Confidence 00001 1335567888888999854
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.09 E-value=2.7e-10 Score=118.53 Aligned_cols=105 Identities=23% Similarity=0.403 Sum_probs=63.5
Q ss_pred CcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC-c-cccccccCCcEEEecCCCCCccchh-hccccccCEEcc
Q 046345 570 EGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED-I-AIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDL 645 (1462)
Q Consensus 570 ~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 645 (1462)
++|++|++++|.++.+|. .+..+.+|++|++++|.++. + ..+.++.+|++|++++|.++.+|.. +.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 456666666666665543 34566666666666666655 2 3356666666666666666666554 456666666666
Q ss_pred CCcccccccCccccccccccceeeccCccc
Q 046345 646 SDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 646 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
++| .+..+|+..+.++++|++|++++|..
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 665 45566655456666666666666543
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=1.9e-10 Score=142.41 Aligned_cols=119 Identities=21% Similarity=0.217 Sum_probs=74.6
Q ss_pred ceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCCccccccccCCcEEE
Q 046345 542 LDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELEDIAIVGQLKKLEILS 621 (1462)
Q Consensus 542 Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~ 621 (1462)
|++|++.+|. +..+|. |..+++|++|+|++|.++.+|..|+.+++|++|+|++|.++.++.++++++|++|+
T Consensus 443 L~~L~Ls~n~------l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~ 514 (567)
T 1dce_A 443 VRVLHLAHKD------LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELL 514 (567)
T ss_dssp CSEEECTTSC------CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEE
T ss_pred ceEEEecCCC------CCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEE
Confidence 4555555554 344543 56667777777777777777777777777777777777766644667777777777
Q ss_pred ecCCCCCcc--chhhccccccCEEccCCcccccccCccc---cccccccceee
Q 046345 622 FRDSDIKEL--PLEIGLLTRLSLLDLSDCWSLEVIAPNV---ISKLSRLEELY 669 (1462)
Q Consensus 622 L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~~p~~~---l~~L~~L~~L~ 669 (1462)
|++|.++.+ |..++.+++|++|++++| .+...|+.. +..+++|+.|+
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 777777666 666777777777777776 455554431 22245555553
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.08 E-value=3.7e-10 Score=117.56 Aligned_cols=122 Identities=21% Similarity=0.262 Sum_probs=106.6
Q ss_pred EEEEccCCCCccCCccCCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEE
Q 046345 521 IAISLPHRDIEVLPERLQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLC 599 (1462)
Q Consensus 521 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~ 599 (1462)
+.+...++.+..+|.. ..++++.|++.++. +..++...|..+++|++|++++|.++.+|. .+..+.+|++|+
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNK------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCc------ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 4577788888888854 34799999999987 567888889999999999999999999876 479999999999
Q ss_pred ecCcccCC-c-cccccccCCcEEEecCCCCCccchhh-ccccccCEEccCCcc
Q 046345 600 LHWCELED-I-AIVGQLKKLEILSFRDSDIKELPLEI-GLLTRLSLLDLSDCW 649 (1462)
Q Consensus 600 L~~~~l~~-~-~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~ 649 (1462)
+++|.++. + ..+.++.+|++|++++|.++.+|..+ ..+++|++|++++|.
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 99999998 4 45789999999999999999998875 789999999999984
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=2.9e-10 Score=140.71 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=104.9
Q ss_pred cceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-ccccccccCCcEEEecCCCCCccchhhccccccCEEccCCcc
Q 046345 571 GLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGLLTRLSLLDLSDCW 649 (1462)
Q Consensus 571 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 649 (1462)
.|++|+|++|.++.+|. ++.+.+|++|+|++|.++. |..++++++|++|+|++|.++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 48999999999999997 9999999999999999998 889999999999999999999998 8999999999999998
Q ss_pred cccccC-ccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEE
Q 046345 650 SLEVIA-PNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLE 701 (1462)
Q Consensus 650 ~l~~~p-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 701 (1462)
.+..++ +..++++++|++|++++|.+..... ....-+..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-----IQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-----CTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-----HHHHHHHHCcccCccC
Confidence 688884 4449999999999999987643221 1223344578888875
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.06 E-value=1.4e-09 Score=120.68 Aligned_cols=198 Identities=10% Similarity=0.140 Sum_probs=117.9
Q ss_pred ccccchhHHHHHHHHHHhccCC-ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~-~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
...++||+.+++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+.. ........ ...+.....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhccCC
Confidence 4568999999999999988654 357899999999999999999988743221100 00000000 001110000
Q ss_pred CC----CCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 235 ME----FGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 235 ~~----~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
.. ........+....+.+.+. .+++.+||+||++.. ..++.+.. .+.....+..+|+||+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~-------~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK-------TLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHH-------HHHSCCTTEEEEEEESCGG
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHH-------HHhcCCCceEEEEEeCChH
Confidence 00 0000111222222333221 256799999999763 22222211 1111345778888887654
Q ss_pred hh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHH
Q 046345 305 LL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANAL 368 (1462)
Q Consensus 305 v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 368 (1462)
.. .........+++.+++.++..+++...+.... ..-..+..+.|++.++|.|..+..+...+
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33 11223356899999999999999998774221 12235678899999999999888766443
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=1.9e-11 Score=129.93 Aligned_cols=140 Identities=22% Similarity=0.272 Sum_probs=102.9
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC-ccccccccCCcEEEecCCCCCccchhhcc
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED-IAIVGQLKKLEILSFRDSDIKELPLEIGL 636 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~i~~lp~~i~~ 636 (1462)
+..+|. .|..+++|++|++++|.++.+| .+..+++|++|++++|.+.. |..+..+++|++|++++|.++.+| .+++
T Consensus 37 l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 37 IEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp CCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 455555 4788888999999888888888 78888889999998888887 666777788899999888888877 6888
Q ss_pred ccccCEEccCCcccccccCc-cccccccccceeeccCcccccccccC--CCccchHhhhcCCCCcEEE
Q 046345 637 LTRLSLLDLSDCWSLEVIAP-NVISKLSRLEELYMGGSFSQWDKVEG--GSNARLDELKELSKLTTLE 701 (1462)
Q Consensus 637 L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~l~~L~~L~ 701 (1462)
+++|++|++++| .+..++. ..+.++++|++|++++|.+....+.. ........+..+++|+.|+
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 888999988887 5666554 34788888888888887653211100 0011123367788888775
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.03 E-value=2.8e-08 Score=118.37 Aligned_cols=292 Identities=12% Similarity=0.054 Sum_probs=174.1
Q ss_pred cccchhHHHHHHHHHHhcc----CCce--EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAKD----DKLN--IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~--vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
..++||+++++.+..++.. +... .+.|+|++|+||||+|+.+++...... -..++|+++....+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5689999999999988864 3333 899999999999999999999885321 13567888778788889999999
Q ss_pred HHhCCCCCC-CcChHHHHHHHHHHHH-ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 231 FDLGMEFGL-NENTFQKAYRLCERLK-KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 231 ~~l~~~~~~-~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
..++..... .....+....+...+. .+++.+||+||++... ....+...+.. .......+..||+||+.....
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~---~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQE---ADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTC---HHHHSSCCEEEEEEESSTHHH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHh---CCCCCcCCEEEEEEECCchHH
Confidence 988765432 1233444444444443 2568999999997751 11121111110 000001467788888876432
Q ss_pred hhc------cCCCceEEccCCCHHHHHHHHHHHhCCC-CCCCCchHHHHHHHHHc---------cCCchHHHHHHHH-Hh
Q 046345 307 EKD------MKSQKNFLIEVLSKDEALQLFECIVGDS-AKTSAIQPIADEIVERC---------EGLPVALSTIANA-LK 369 (1462)
Q Consensus 307 ~~~------~~~~~~~~l~~L~~~ea~~lf~~~~~~~-~~~~~~~~~~~~i~~~~---------~glPlai~~~~~~-l~ 369 (1462)
... .-....+++.+++.++..+++...+... ....-..+..+.|++.+ +|.|..+..+... ..
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 110 0112369999999999999998876320 11223457788899999 7887554443322 11
Q ss_pred -----cC---CHHHHHHHHHHHhcCccccccchhhHHHHHHHHhhhccChHHHHHHHHHhcccC---CCcccChhHHHHH
Q 046345 370 -----SK---SLDFWKDALYRLRSSNAREIHGMRANVFTSIELSYNLLEIEEAKSLFLLCGLYS---EGHAIQVPSLLRY 438 (1462)
Q Consensus 370 -----~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~a~fp---~~~~i~~~~Li~~ 438 (1462)
+. +.+....+....... .+.-.+..|+. +.+.++..++.+. .+-.+....+...
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~~--------------~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLFG--------------ISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSCC--------------CCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhhh--------------hHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 11 333433333332211 12233566775 5566666666543 2214555666554
Q ss_pred Hhc----cccccccccHHHHHHHHHHHHHHHHHcccccc
Q 046345 439 GMG----LCLFENVYKLEEARSRVHTLIDILKASCLLSD 473 (1462)
Q Consensus 439 W~a----~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 473 (1462)
+.. .|.. . .+ ...+..++++|...+++..
T Consensus 318 ~~~~~~~~~~~-~-~~----~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 318 YKIVCEEYGER-P-RV----HSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHHHHTTCC-C-CC----HHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHcCCC-C-CC----HHHHHHHHHHHHhCCCeEE
Confidence 422 1110 0 01 2345678899999999864
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=6.8e-10 Score=114.58 Aligned_cols=100 Identities=24% Similarity=0.407 Sum_probs=72.0
Q ss_pred eEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchhh-ccccccCEEccCCcc
Q 046345 573 KVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLEI-GLLTRLSLLDLSDCW 649 (1462)
Q Consensus 573 r~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~ 649 (1462)
++++++++.++.+|..+. .+|++|+|++|.++. +..|+++++|++|+|++|.++.+|..+ .++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 567777777777776654 677777777777766 456777777777777777777777653 67777777777776
Q ss_pred cccccCccccccccccceeeccCccc
Q 046345 650 SLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 650 ~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
.+..+|+..+.++++|++|++++|..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 56777766677777777777777654
No 147
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.01 E-value=8.4e-10 Score=102.96 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=64.8
Q ss_pred HHHHHhHhHHHHHhhccchhchhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhcC-CcchHHHHHHHHHHHHHHHHHHHHH
Q 046345 13 VSEGSKTLFKPIIRQVSYLFKYQSYIDELKNQVRQLGYKREMVQQPVNQASLQR-DEIYEGVTNWLNSVDEFSEGVAKSI 91 (1462)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~-~~~~~~v~~wl~~~~~~~~~~~ed~ 91 (1462)
++.+++++.+.+.++ +..+.+++++++.|++++..|++++.+|++++ ...++.++.|+++||++||| +||+
T Consensus 3 v~~ll~KL~~ll~~E-------~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD-~ED~ 74 (115)
T 3qfl_A 3 ISNLIPKLGELLTEE-------FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYV-IEDV 74 (115)
T ss_dssp TCSHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH-HHHH
Confidence 445566666664444 45678999999999999999999999999874 34689999999999999999 9999
Q ss_pred hhhHHHh
Q 046345 92 IDDEDRA 98 (1462)
Q Consensus 92 ld~~~~~ 98 (1462)
+|+|...
T Consensus 75 iD~f~~~ 81 (115)
T 3qfl_A 75 VDKFLVQ 81 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999643
No 148
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.00 E-value=3.9e-09 Score=114.88 Aligned_cols=186 Identities=11% Similarity=0.076 Sum_probs=117.7
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGM 235 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 235 (1462)
...++||++.++.+..++..+..+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 45688999999999999987766569999999999999999999986422211224444444433333222222111110
Q ss_pred CCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEecchhhh-hhccCC
Q 046345 236 EFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EKDMKS 312 (1462)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~~~~~ 312 (1462)
.. ....++.+||+||++.... .+.+. +.+.....+.++|+||+..... ......
T Consensus 96 ~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~-------~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 96 AP----------------IGGAPFKIIFLDEADALTADAQAALR-------RTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp CC----------------STTCSCEEEEEETGGGSCHHHHHHHH-------HHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred cC----------------CCccCceEEEEeChhhcCHHHHHHHH-------HHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 00 0125788999999976522 22221 1111144577888888765433 112233
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHH
Q 046345 313 QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 313 ~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
...+++.+++.++..+++.+.+.... ..-..+..+.|++.++|.|..+..+.
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEG-VKITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45899999999999999988773211 11235677889999999998655433
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=8e-10 Score=113.72 Aligned_cols=101 Identities=23% Similarity=0.350 Sum_probs=79.8
Q ss_pred ceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchh-hccccccCEEccCCc
Q 046345 572 LKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDC 648 (1462)
Q Consensus 572 Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~ 648 (1462)
.++|+++++.++.+|..+. .+|++|+|++|.++. +..|.++.+|++|+|++|.++.+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4678888888888887663 778888888888877 46688888888888888888888775 468888888888887
Q ss_pred ccccccCccccccccccceeeccCccc
Q 046345 649 WSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 649 ~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
.+..+|+..+.++++|++|++++|..
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 67777777678888888888887754
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=2.2e-11 Score=129.51 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=116.3
Q ss_pred cEEEEccCC--CCccCCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCcccCCCCcCc
Q 046345 520 PIAISLPHR--DIEVLPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQ 596 (1462)
Q Consensus 520 ~r~lsl~~~--~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr 596 (1462)
++...+.+. .+..+|.. ..+++|++|++.+|. +..+| .|.++++|++|++++|.++.+|..+..+++|+
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~------l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN------IEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLE 96 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE------ESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCS
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC------Ccccc--ccccCCCCCEEECCCCCcccccchhhcCCcCC
Confidence 444555433 44555533 568999999999887 56677 57999999999999999999999888899999
Q ss_pred EEEecCcccCCccccccccCCcEEEecCCCCCccch--hhccccccCEEccCCcccccccCc----------cccccccc
Q 046345 597 TLCLHWCELEDIAIVGQLKKLEILSFRDSDIKELPL--EIGLLTRLSLLDLSDCWSLEVIAP----------NVISKLSR 664 (1462)
Q Consensus 597 ~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~----------~~l~~L~~ 664 (1462)
+|++++|.++.++.++++++|++|++++|.++.+|. .+..+++|++|++++| .+...++ ..+.++++
T Consensus 97 ~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~ 175 (198)
T 1ds9_A 97 ELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPN 175 (198)
T ss_dssp EEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred EEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCC
Confidence 999999999996689999999999999999998875 7899999999999998 4544322 23788999
Q ss_pred cceee
Q 046345 665 LEELY 669 (1462)
Q Consensus 665 L~~L~ 669 (1462)
|++|+
T Consensus 176 L~~Ld 180 (198)
T 1ds9_A 176 LKKLD 180 (198)
T ss_dssp CSEEC
T ss_pred cEEEC
Confidence 99997
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=5.4e-09 Score=107.80 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=76.6
Q ss_pred eEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEecCcccCC-c-cccccccCCcE
Q 046345 543 DLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHWCELED-I-AIVGQLKKLEI 619 (1462)
Q Consensus 543 r~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~ 619 (1462)
+.+++.++. +..+|..++ ++|++|+|++|.|+.+ |..|..+++|++|+|++|.++. | ..|.++.+|++
T Consensus 15 ~~l~~~~n~------l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIR------LASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSC------CSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCC------CCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 456666555 455665542 6788888888888877 5578888888888888888887 4 34678888888
Q ss_pred EEecCCCCCccchh-hccccccCEEccCCcccccccC
Q 046345 620 LSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIA 655 (1462)
Q Consensus 620 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p 655 (1462)
|+|++|.++.+|.. +..+++|++|++++| .+.-.+
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~ 121 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNN-PWDCEC 121 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSS-CBCTTB
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCC-Cccccc
Confidence 88888888888775 778888888888887 344443
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=1.5e-08 Score=117.34 Aligned_cols=64 Identities=8% Similarity=0.104 Sum_probs=30.6
Q ss_pred cccccceeecccccccccccccCCCcccCCCCce-EEEEecCCCcCccCchhhhhhcccCcEEEEeccccccee
Q 046345 916 IFPRLEELELKRLANIDKLWPDQLQGLSYCQNLT-KLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERI 988 (1462)
Q Consensus 916 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~-~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 988 (1462)
.+++|++|++.++ ++.++...+. .+++|+ .+.+.+ +++.+ +...|.++++|+.+++.+ +.++.+
T Consensus 248 ~~~~L~~l~l~~n--i~~I~~~aF~---~~~~L~~~l~l~~--~l~~I-~~~aF~~c~~L~~l~l~~-n~i~~I 312 (329)
T 3sb4_A 248 QKKYLLKIKLPHN--LKTIGQRVFS---NCGRLAGTLELPA--SVTAI-EFGAFMGCDNLRYVLATG-DKITTL 312 (329)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTT---TCTTCCEEEEECT--TCCEE-CTTTTTTCTTEEEEEECS-SCCCEE
T ss_pred CCCCCCEEECCcc--cceehHHHhh---CChhccEEEEEcc--cceEE-chhhhhCCccCCEEEeCC-CccCcc
Confidence 3445555555542 4444444332 455555 555554 34433 234455555555555544 334444
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=2.7e-08 Score=115.10 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=116.7
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
....++||+..++.+..++..+..+.+.++|++|+||||+|+.+++..........+++++.+.......+ .+++..+.
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 34668899999999999998877666999999999999999999998632211112444444333222221 11111110
Q ss_pred CCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecchhhh-hhccC
Q 046345 235 MEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EKDMK 311 (1462)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~~~~ 311 (1462)
.... .+..+++.++|+||++... ..+.+. +++.....++++|+||+..... .....
T Consensus 98 ~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~-------~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 98 QKKL--------------HLPPGKHKIVILDEADSMTAGAQQALR-------RTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp HBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTH-------HHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred hccc--------------cCCCCCceEEEEECcccCCHHHHHHHH-------HHHhccCCCceEEEEeCChhhchhHHHh
Confidence 0000 0002468899999997642 222221 1111244577888888765432 12233
Q ss_pred CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchH-HHHHHH
Q 046345 312 SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVA-LSTIAN 366 (1462)
Q Consensus 312 ~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla-i~~~~~ 366 (1462)
....+++.+++.++..+++...+.... ..-..+.+..|++.++|.|.. +..+..
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLED-VKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445899999999999999988763211 112356778999999999954 444443
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.78 E-value=1.1e-08 Score=105.06 Aligned_cols=97 Identities=23% Similarity=0.239 Sum_probs=69.9
Q ss_pred eEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-CcccCCCCcCcEEEecCcccCC-c-cccccccCCcE
Q 046345 543 DLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-PSSLGRLTSLQTLCLHWCELED-I-AIVGQLKKLEI 619 (1462)
Q Consensus 543 r~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~ 619 (1462)
+++++.++. +..+|..+ .+.|++|+|++|.|+.+ |..|..+.+|++|+|++|.++. + ..|.++.+|++
T Consensus 12 ~~l~~s~n~------l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 12 TTVDCSGKS------LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TEEECTTSC------CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEeCCCC------cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 445555544 45555543 26677888888888777 4567788888888888888777 3 44677888888
Q ss_pred EEecCCCCCccchh-hccccccCEEccCCc
Q 046345 620 LSFRDSDIKELPLE-IGLLTRLSLLDLSDC 648 (1462)
Q Consensus 620 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~ 648 (1462)
|+|++|.++.+|.. +.++++|++|++++|
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 88888888877764 677888888888887
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=4.7e-08 Score=112.99 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=54.3
Q ss_pred ccCCcEEEecCCCCCccchh-hccccccCEEccCCcccccccCccccccccccc-eeeccCcccccccccCCCccchHhh
Q 046345 614 LKKLEILSFRDSDIKELPLE-IGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLE-ELYMGGSFSQWDKVEGGSNARLDEL 691 (1462)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L 691 (1462)
+.+|+.|++++|+++.+|.. +.++++|+.|+++++ +..++...|.++.+|+ .+++..+.. . -....+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~-~--------I~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVT-A--------IEFGAF 293 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCC-E--------ECTTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccce-E--------Echhhh
Confidence 55677777776667666653 556677777777664 6666666677777776 666654211 1 112455
Q ss_pred hcCCCCcEEEEEeecccCCCcc
Q 046345 692 KELSKLTTLEIHVRDAEILPQD 713 (1462)
Q Consensus 692 ~~l~~L~~L~l~~~~~~~~~~~ 713 (1462)
.++++|+.+.+..+.+..++..
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TTCTTEEEEEECSSCCCEECTT
T ss_pred hCCccCCEEEeCCCccCccchh
Confidence 6667777777666655555543
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=9.8e-08 Score=110.53 Aligned_cols=186 Identities=14% Similarity=0.122 Sum_probs=114.2
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGM 235 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 235 (1462)
...++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.++.+.......+ .
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-------- 94 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-R-------- 94 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-H--------
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-H--------
Confidence 3568899999999999998877767999999999999999999998632111011333332221000000 0
Q ss_pred CCCCCcChHHHHHHHHHH--HHccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecchhhh-hhcc
Q 046345 236 EFGLNENTFQKAYRLCER--LKKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EKDM 310 (1462)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~~~ 310 (1462)
+........ +..+++.++|+||++... ..+.+. +.+.....++++|+||...... ....
T Consensus 95 ---------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~-------~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 95 ---------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALR-------RTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp ---------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHH-------HHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred ---------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHH-------HHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 001111000 112568899999997642 222221 1111144577888888765432 1112
Q ss_pred CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHH
Q 046345 311 KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANA 367 (1462)
Q Consensus 311 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~ 367 (1462)
.....+++.+++.++..+++...+..... .-..+..+.|++.++|.|..+..+...
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 23347899999999999999887742211 123567888999999999865544433
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=9.4e-08 Score=111.64 Aligned_cols=98 Identities=27% Similarity=0.273 Sum_probs=59.2
Q ss_pred EEecCC-CCCCCCcccCCCCcCcEEEecC-cccCC--ccccccccCCcEEEecCCCCCccch-hhccccccCEEccCCcc
Q 046345 575 LDFTGI-HFSSLPSSLGRLTSLQTLCLHW-CELED--IAIVGQLKKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCW 649 (1462)
Q Consensus 575 L~Ls~~-~i~~lp~~i~~L~~Lr~L~L~~-~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 649 (1462)
++++++ .++.+|. |..+.+|++|+|++ |.+.. +..|++|.+|++|+|++|.++.+|+ .+.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence 455665 5666666 66666666666664 66655 2456666666666666666665544 3466666666666665
Q ss_pred cccccCccccccccccceeeccCccc
Q 046345 650 SLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 650 ~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
.+..+|+..+..+. |++|++.+|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 56666655444444 66666665543
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.1e-06 Score=98.19 Aligned_cols=173 Identities=13% Similarity=0.144 Sum_probs=107.1
Q ss_pred cchhHHHHHHHHHHhc----cCCceEEEEEecCCCcHHHHHHHHHHHHhhccC---C--CeEEEEEecCCCCHHHHHHHH
Q 046345 159 FDSRMKVFQDVVEAAK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS---F--DKVVMAEVTQTPDHQKIQDKL 229 (1462)
Q Consensus 159 ~~gr~~~~~~l~~~l~----~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~---f--~~~~wv~~~~~~~~~~~~~~i 229 (1462)
..||+++++.+...+. .+..+.+.|+|++|+|||++|+.+++....... . -.++.++.....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6799999999987765 466778999999999999999999999853221 1 135677777777888999999
Q ss_pred HHHhCCCCCCCcChHHHHHHHHHHH--HccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh-
Q 046345 230 AFDLGMEFGLNENTFQKAYRLCERL--KKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL- 306 (1462)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~- 306 (1462)
++++...........+....++..+ ..+++++++||+++...+-+.+ .. +.+..........||.++...+..
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L-~~---l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKIL-QY---FEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHH-HH---HHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHH-HH---HHhcccccCCcEEEEEEecCcccch
Confidence 9998544221222334445555543 2367899999999765321111 00 000000011122344445433221
Q ss_pred ---hhc---cCCCceEEccCCCHHHHHHHHHHHhC
Q 046345 307 ---EKD---MKSQKNFLIEVLSKDEALQLFECIVG 335 (1462)
Q Consensus 307 ---~~~---~~~~~~~~l~~L~~~ea~~lf~~~~~ 335 (1462)
... .-....+.+.+++.++-.+++..++.
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 000 11124799999999999999988873
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=1.7e-08 Score=117.83 Aligned_cols=151 Identities=13% Similarity=-0.025 Sum_probs=70.0
Q ss_pred CcEEEEccCCCCccCC-----cc--CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCC-----C
Q 046345 519 DPIAISLPHRDIEVLP-----ER--LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSL-----P 586 (1462)
Q Consensus 519 ~~r~lsl~~~~~~~l~-----~~--~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-----p 586 (1462)
.++.+.+.++.+.... .. ...++|+.|++.+|.. ...-...++..+++|+.|+|++|.++.. .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-----DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-----CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-----CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 4667777766654311 11 1224566666655542 1111122233344556666666655421 1
Q ss_pred ccc-CCCCcCcEEEecCcccCC------ccccccccCCcEEEecCCCCCc-----cchhhccccccCEEccCCccccccc
Q 046345 587 SSL-GRLTSLQTLCLHWCELED------IAIVGQLKKLEILSFRDSDIKE-----LPLEIGLLTRLSLLDLSDCWSLEVI 654 (1462)
Q Consensus 587 ~~i-~~L~~Lr~L~L~~~~l~~------~~~i~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~~ 654 (1462)
..+ ....+|++|+|++|.+.. ...+..+++|++|+|++|.+.. ++..+...++|++|+|++| .+...
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 111 234456666666665543 1233445556666666655542 2334445555666666555 33322
Q ss_pred Ccc----ccccccccceeeccCccc
Q 046345 655 APN----VISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 655 p~~----~l~~L~~L~~L~l~~~~~ 675 (1462)
... .+...++|++|++++|.+
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCC
Confidence 111 123345555555555543
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.49 E-value=7.2e-07 Score=102.76 Aligned_cols=183 Identities=11% Similarity=0.088 Sum_probs=113.2
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCC-eEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFD-KVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
...++|++..++.+..++..+..+.+.++|++|+|||++|+.+++..... .+. ..+.++.+.......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~---------- 84 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDV---------- 84 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTT-CHHHHCEEEETTSTTCTTT----------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCC-cccCCeEEEeCccccChHH----------
Confidence 45688999999999999887776669999999999999999999986311 111 123334333211100
Q ss_pred CCCCCCcChHHHHHHHHHH--HHccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEecchhhh-hhc
Q 046345 235 MEFGLNENTFQKAYRLCER--LKKEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EKD 309 (1462)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~~ 309 (1462)
..+........ +..+++.++|+||++.... .+.+.. ++.....++++|+||...... ...
T Consensus 85 --------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~-------~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 85 --------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRR-------TMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp --------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGG-------GTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred --------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHH-------HHHhcCCCCeEEEEeCChhhcchHH
Confidence 00111111100 1125688999999976421 222211 111244567788887765432 122
Q ss_pred cCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHH
Q 046345 310 MKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 310 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
......+++.+++.++..+++...+.... ..-..+....+++.++|.+..+....
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEG-VKITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHTTC-CCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33445899999999999999988774221 12235677889999999988654433
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.45 E-value=2e-07 Score=108.82 Aligned_cols=90 Identities=20% Similarity=0.128 Sum_probs=78.2
Q ss_pred ccccChhhhhcCCcceEEEecC-CCCCCCC-cccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchh
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTG-IHFSSLP-SSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLE 633 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~-~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~ 633 (1462)
+..+|. |..+.+|++|+|++ |.++.+| ..|+.|.+|++|+|++|.++. +..|.+|.+|++|+|++|.++.+|..
T Consensus 21 l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 667887 78899999999996 9999887 579999999999999999988 56789999999999999999999887
Q ss_pred hccccccCEEccCCcc
Q 046345 634 IGLLTRLSLLDLSDCW 649 (1462)
Q Consensus 634 i~~L~~L~~L~L~~~~ 649 (1462)
+.....|++|++.+|.
T Consensus 99 ~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred HcccCCceEEEeeCCC
Confidence 6655559999999873
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.42 E-value=1.3e-06 Score=103.13 Aligned_cols=195 Identities=10% Similarity=0.151 Sum_probs=111.9
Q ss_pred ccccchhHHHHHHHHHHhccCC-ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~-~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
...++||+..++.+..++..++ .+.+.|+|++|+||||+|+.+++.......+.. ...........+.....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccCC
Confidence 3558999999999999988655 357899999999999999999998742211100 00000000111110000
Q ss_pred CCC----CCCcChHHHHHHHHHHHH----ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 235 MEF----GLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 235 ~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
... .......+....+...+. .+++.++|+||++... ..+.+ .+++.....+..+|++|....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L-------l~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL-------LKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHH-------HHHHHSCCSSEEEEEEESCGG
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHH-------HHHHhcCCCceEEEEEeCChH
Confidence 000 000000111222333321 2567899999997542 22222 111112345667777776543
Q ss_pred hh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHH
Q 046345 305 LL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 305 v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
.. .........+++.+++.++..+++...+.... ..-..+.+..|++.++|.|..+..+.
T Consensus 161 ~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 161 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 32 22233456899999999999999987763111 11235667889999999998876554
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.37 E-value=4.6e-06 Score=96.11 Aligned_cols=182 Identities=14% Similarity=0.105 Sum_probs=108.3
Q ss_pred ccccchhHHHHHHHHHHhcc-----CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHH
Q 046345 156 YEAFDSRMKVFQDVVEAAKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-----~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
...++|++..++.+..++.. ...+.+.|+|++|+|||++|+.+++... . ..++++.+......++.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--~---~~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--V---NLRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--C---CEEEECTTTCCSHHHHH----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEeccccCChHHHH----
Confidence 45689999988888877752 3345789999999999999999998773 2 23444443332222211
Q ss_pred HHhCCCCCCCcChHHHHHHHHHHHHc--cCcEEEEEcCCccccc--ccccCCCCcccc-c----------cccCCCCCcE
Q 046345 231 FDLGMEFGLNENTFQKAYRLCERLKK--EKKVLIILDNIWTKLE--LDVVGIPYGDVE-K----------ERKDDESGCT 295 (1462)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~--~~~~~~~~~~l~-~----------~~~~~~~gs~ 295 (1462)
..+.. .++.+|++||+..... ...+...+.... . .......+.+
T Consensus 82 ---------------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 82 ---------------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---------------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---------------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11211 3556888899865421 111100000000 0 0000112456
Q ss_pred EEEEecchhhhh-hccCCC-ceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHHHHH
Q 046345 296 IILTSRNRDLLE-KDMKSQ-KNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIANAL 368 (1462)
Q Consensus 296 IlvTtr~~~v~~-~~~~~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 368 (1462)
+|.||....... ...... ..+.+.+++.+|..+++...+.... ..-..+..+.+++.++|.|..+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777666543321 112222 5899999999999999988874322 12335778899999999998877665544
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.26 E-value=2.3e-07 Score=108.33 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=110.1
Q ss_pred CCcceEEEEeecCCCCCccccccChhhhh-----cCCcceEEEecCCCCCC--CCcccCCCCcCcEEEecCcccCC--cc
Q 046345 539 CPRLDLFLLFTKGDGSFPISMQMSDLFFE-----GTEGLKVLDFTGIHFSS--LPSSLGRLTSLQTLCLHWCELED--IA 609 (1462)
Q Consensus 539 ~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~-----~l~~Lr~L~Ls~~~i~~--lp~~i~~L~~Lr~L~L~~~~l~~--~~ 609 (1462)
.++|+.|++.+|.. .......|. ..++|++|+|++|.++. +..-...+.+|++|+|++|.+.. ..
T Consensus 71 ~~~L~~L~Ls~n~l------~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRM------TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HTTCCEEECTTSCC------CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred HhhCCEEEecCCCC------CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 46788999988873 222212222 23689999999998863 22223346689999999999876 33
Q ss_pred cc-----ccccCCcEEEecCCCCCc-----cchhhccccccCEEccCCcccccccC----ccccccccccceeeccCccc
Q 046345 610 IV-----GQLKKLEILSFRDSDIKE-----LPLEIGLLTRLSLLDLSDCWSLEVIA----PNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 610 ~i-----~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~~p----~~~l~~L~~L~~L~l~~~~~ 675 (1462)
.+ ....+|++|+|++|.++. ++..+..+++|++|+|++| .+.... ...+...++|++|++++|.+
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 33 246789999999998864 5556678899999999998 455432 22366778999999998876
Q ss_pred ccccccCCCccchHhhhcCCCCcEEEEEeecccC
Q 046345 676 QWDKVEGGSNARLDELKELSKLTTLEIHVRDAEI 709 (1462)
Q Consensus 676 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 709 (1462)
.... .......+...++|++|++++|.+..
T Consensus 224 ~~~g----~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 224 GDTA----ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CHHH----HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CHHH----HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3211 11234556678899999999887654
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.26 E-value=9.4e-06 Score=96.23 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=39.7
Q ss_pred cccccccCCCcccCCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEecccccceecccCCCCCCccccccccccccc
Q 046345 931 IDKLWPDQLQGLSYCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKL 1010 (1462)
Q Consensus 931 l~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L 1010 (1462)
++++....+. .|.+|+++.|.+ .++.+ ....+.++++|+.+++.+ .++.++.. .+..+++|
T Consensus 59 VtsIg~~AF~---~c~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I~~~-----------aF~~c~~L 119 (394)
T 4fs7_A 59 VVSIGYAAFQ---GCRKVTEIKIPS--TVREI-GEFAFENCSKLEIINIPD--SVKMIGRC-----------TFSGCYAL 119 (394)
T ss_dssp EEEECTTTTT---TCTTEEEEECCT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEECTT-----------TTTTCTTC
T ss_pred EeEhHHHHhh---CCCCceEEEeCC--CccCc-chhHhhCCCCCcEEEeCC--CceEccch-----------hhcccccc
Confidence 4455555443 677888888753 35554 345577778888877753 35555432 45556666
Q ss_pred ceeeec
Q 046345 1011 YALQLT 1016 (1462)
Q Consensus 1011 ~~L~L~ 1016 (1462)
+.+.+.
T Consensus 120 ~~i~~p 125 (394)
T 4fs7_A 120 KSILLP 125 (394)
T ss_dssp CCCCCC
T ss_pred hhhccc
Confidence 655544
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.25 E-value=2.5e-06 Score=89.93 Aligned_cols=160 Identities=13% Similarity=0.170 Sum_probs=89.3
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc-----CCCeEEEEEecCCCCHHHHHHHHH
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK-----SFDKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
...++||+++++.+...+..+..+.+.|+|++|+|||++|+.+++...... ....++++++.. + .
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~ 90 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L----V 90 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H----H
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H----h
Confidence 456889999999999999877667889999999999999999999874311 112344444321 1 0
Q ss_pred HHhCCCCCCCcChHHHHHHHHHHH-HccCcEEEEEcCCccccccc--ccCCCCccccccccCCCCCcEEEEEecchhhh-
Q 046345 231 FDLGMEFGLNENTFQKAYRLCERL-KKEKKVLIILDNIWTKLELD--VVGIPYGDVEKERKDDESGCTIILTSRNRDLL- 306 (1462)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~~~~--~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~- 306 (1462)
..... ..........+...+ ..+++.+||+||++....-. ........++.... ...+..+|+||......
T Consensus 91 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 91 ---AGAKY-RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-ARGELHCVGATTLDEYRQ 165 (195)
T ss_dssp ---TTTCS-HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-HTTSCCEEEEECHHHHHH
T ss_pred ---ccCCc-cccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-ccCCeEEEEeCCHHHHHH
Confidence 00000 001122233333333 23678899999997642100 00000111111111 12344566666654321
Q ss_pred -----hhccCCCceEEccCCCHHHHHHHH
Q 046345 307 -----EKDMKSQKNFLIEVLSKDEALQLF 330 (1462)
Q Consensus 307 -----~~~~~~~~~~~l~~L~~~ea~~lf 330 (1462)
.........+.+.+++.++..+++
T Consensus 166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 YIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 112223346899999988876653
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.22 E-value=1.3e-05 Score=94.46 Aligned_cols=250 Identities=15% Similarity=0.154 Sum_probs=151.5
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCCCccchhh
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDIKELPLEI 634 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~~lp~~i 634 (1462)
+..|+...|.+. +|+.+++..+ ++.+++ +|.+ .+|+.+.+.. .++. ...|.++.+|+.+++++|+++.+|...
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 567778888885 7999998776 777764 5666 4799999986 5555 477889999999999999999998877
Q ss_pred ccccccCEEccCCcccccccCccccccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccCCCcc-
Q 046345 635 GLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEILPQD- 713 (1462)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~- 713 (1462)
....+|+.+.+.. .+..++...|.++.+|+.+.+..+.... ....+.+ .+|+.+.+. +.+..++..
T Consensus 200 F~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~~I---------~~~aF~~-~~L~~i~lp-~~i~~I~~~a 266 (401)
T 4fdw_A 200 FVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVSTI---------GQEAFRE-SGITTVKLP-NGVTNIASRA 266 (401)
T ss_dssp TTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCCEE---------CTTTTTT-CCCSEEEEE-TTCCEECTTT
T ss_pred EeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCccCc---------ccccccc-CCccEEEeC-CCccEEChhH
Confidence 6678999999986 4888888889999999999987643211 1123333 577777773 333333222
Q ss_pred -ccccccceeEEEEccccCCcccCccccceEEEccCcchhHHHHHHHHhccccceEeccccCcccccccccCCCCCCCCc
Q 046345 714 -LVFMELERYRICIGKKWDSWSVKSETSRFMKLQGLEKVSILLWMKLLLKRTEDLYLSKLKGVQNVVHELDDGEGFPRLN 792 (1462)
Q Consensus 714 -~~~~~L~~L~i~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~l~~L~ 792 (1462)
..+.+|+.+.+....... .....+.. ..+..+++|+
T Consensus 267 F~~c~~L~~l~l~~~~~~~-----------------------------------------~~~~~I~~--~aF~~c~~L~ 303 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFND-----------------------------------------DPEAMIHP--YCLEGCPKLA 303 (401)
T ss_dssp TTTCTTCCEEEEESSCCCC-----------------------------------------CTTCEECT--TTTTTCTTCC
T ss_pred hhCCCCCCEEEeCCccccC-----------------------------------------CcccEECH--HHhhCCccCC
Confidence 222333333321110000 00000110 1144667777
Q ss_pred EEEEeecccceeeecCcCCCccccccccccceecccccccccccccccccCCCcCCCcCEEEEecCCCCCccCCHHHHHH
Q 046345 793 RLQVKDCYEILQIVGSVGRDNIRCKVFPLLESLSLTNLINLETICDSPLTEDHSFINLRIIKVKACEKLKHLFSFSMAKN 872 (1462)
Q Consensus 793 ~L~L~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 872 (1462)
.+.+.+ .+..+.... ...+++|+.+.|.+ +++.+....|. .+ +|+.+.+.++ .+..++. ..+..
T Consensus 304 ~l~l~~--~i~~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~---~~-~L~~l~l~~n-~~~~l~~-~~F~~ 367 (401)
T 4fdw_A 304 RFEIPE--SIRILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFN---NT-GIKEVKVEGT-TPPQVFE-KVWYG 367 (401)
T ss_dssp EECCCT--TCCEECTTT------TTTCCSCCEEEECT--TCCEECTTSSS---SS-CCCEEEECCS-SCCBCCC-SSCCC
T ss_pred eEEeCC--ceEEEhhhh------hcCCCCccEEEECc--cccEEcHHhCC---CC-CCCEEEEcCC-CCccccc-ccccC
Confidence 777763 344443221 12346677777743 46666555442 34 7888888764 3333332 12233
Q ss_pred h-ccCCEEEEec
Q 046345 873 L-LRLQKAEVDY 883 (1462)
Q Consensus 873 L-~~L~~L~l~~ 883 (1462)
+ .++..|.+..
T Consensus 368 ~~~~l~~l~vp~ 379 (401)
T 4fdw_A 368 FPDDITVIRVPA 379 (401)
T ss_dssp SCTTCCEEEECG
T ss_pred CCCCccEEEeCH
Confidence 4 3667777764
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=3.2e-06 Score=98.87 Aligned_cols=195 Identities=12% Similarity=0.121 Sum_probs=113.0
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCC-CeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSF-DKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
...++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++.......+ ..++.++.+.......+...+.....
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhh
Confidence 45688999999999999988765568999999999999999999986421111 12333444433333322221111111
Q ss_pred CCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCcEEEEEecchhhh-hhccC
Q 046345 235 MEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EKDMK 311 (1462)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~~~~ 311 (1462)
......... .......+++-++++|++..... ...+. +.+.......++|++|...... .....
T Consensus 116 ~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll-------~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 116 LTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALR-------RTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp SCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHH-------HHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred hcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHH-------HHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 100000000 00001124567999999865421 12221 1111133456777777654322 11122
Q ss_pred CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 312 SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 312 ~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
....+++.+++.++....+...+.... ..-..+..+.|++.++|.|..+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQEN-VKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 334789999999999999988764221 1233577899999999999865443
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=4.7e-06 Score=97.36 Aligned_cols=197 Identities=10% Similarity=0.091 Sum_probs=108.7
Q ss_pred ccccchhHHHHHHHHHHh-ccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC----CCe--------------------
Q 046345 156 YEAFDSRMKVFQDVVEAA-KDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS----FDK-------------------- 210 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l-~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~-------------------- 210 (1462)
...++|++..++.+..++ ..++.+.+.|+|++|+||||+|+.+++....... ++.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 456889999999999988 6665555999999999999999999996521110 000
Q ss_pred EEEEEecCC-CCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccC
Q 046345 211 VVMAEVTQT-PDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKD 289 (1462)
Q Consensus 211 ~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~ 289 (1462)
.+.+..+.. .......++++..+........ .. . ...+ ..++-++|+|++... +.+.. ..+.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~-~-ls~l-~~~~~vlilDE~~~L-~~~~~----~~L~~~le~ 160 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQVDF----QD-S-KDGL-AHRYKCVIINEANSL-TKDAQ----AALRRTMEK 160 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSS-CHHHH----HHHHHHHHH
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhccccc----cc-c-cccc-CCCCeEEEEeCcccc-CHHHH----HHHHHHHHh
Confidence 111111100 0000011222222211111000 00 0 0001 246779999999773 22111 111111211
Q ss_pred CCCCcEEEEEecchhhh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCc-hHHHHHHHHHccCCchHHHHHH
Q 046345 290 DESGCTIILTSRNRDLL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAI-QPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 290 ~~~gs~IlvTtr~~~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~-~~~~~~i~~~~~glPlai~~~~ 365 (1462)
...+.++|++|++.... .........+++.+++.++..+.+...+..... .-. .+.+..|++.++|.+..+..+.
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 33567888888875432 222344578999999999999999887632111 111 4667889999999887655443
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=2.4e-05 Score=92.62 Aligned_cols=64 Identities=6% Similarity=0.112 Sum_probs=38.0
Q ss_pred ccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC--ccccccccCCcEEEec
Q 046345 558 SMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFR 623 (1462)
Q Consensus 558 ~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~ 623 (1462)
...|....|.++.+|+.++|.. .++.+++ +|.++.+|+.+++..+ ++. ...|.++.+|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 3456666677777777777753 3566643 5666777777776543 333 2445555666555444
No 171
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.7e-05 Score=91.68 Aligned_cols=177 Identities=12% Similarity=0.163 Sum_probs=106.8
Q ss_pred CCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCC-eEEEEEecCCCCHHHHHHHHHHH
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFD-KVVMAEVTQTPDHQKIQDKLAFD 232 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 232 (1462)
.....++|.+..++.+..++..++.+.+.++|++|+||||+|+.+++..... .+. .+.-++.+.......+.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir------ 94 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVR------ 94 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHH------
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHH------
Confidence 3456678999999999999988876559999999999999999999987421 111 12222222222221111
Q ss_pred hCCCCCCCcChHHHHHHHHHHHH------ccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 233 LGMEFGLNENTFQKAYRLCERLK------KEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 233 l~~~~~~~~~~~~~~~~l~~~l~------~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
.....+. .+++.++|+|+++... ..+.+ .+++......+++|++|....
T Consensus 95 ----------------~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L-------~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 95 ----------------NQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNAL-------RRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp ----------------THHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHH-------HHHHHHTTTTEEEEEEESCGG
T ss_pred ----------------HHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHH-------HHHHhcCCCCeEEEEEecCcc
Confidence 1111111 1347799999986532 11221 111111334667777776543
Q ss_pred hh-hhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHH
Q 046345 305 LL-EKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVAL 361 (1462)
Q Consensus 305 v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 361 (1462)
.. .........+++.+++.++..+.+...+.... ..-..+..+.|++.++|-+..+
T Consensus 152 ~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~-~~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 152 KLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEK-LKLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTT-CCBCHHHHHHHHHHHTTCHHHH
T ss_pred ccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 22 12223345789999999999988887763211 1122456788899999977643
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.12 E-value=1.7e-05 Score=89.26 Aligned_cols=185 Identities=18% Similarity=0.207 Sum_probs=105.9
Q ss_pred ccccchhHHHHHHHHHHhcc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...++|.++.++.+.+.+.. ...+.+.|+|++|+|||++|+.+++... . ..+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--~---~~~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--A---TFIRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--C---EEEEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--C---CEEEEehHHHHH-
Confidence 45688999999888877642 3445789999999999999999998863 1 123333322110
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc---------ccccCCCCcccccccc--CCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE---------LDVVGIPYGDVEKERK--DDE 291 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~~~~~~~~l~~~~~--~~~ 291 (1462)
.. ..........++......++.+|++||++.... .......+..+.+... ...
T Consensus 90 -------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 -------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 00 111223344455555456778999999975310 0000000000110000 123
Q ss_pred CCcEEEEEecchhhhhhc-cC--C-CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccC-CchHHHH
Q 046345 292 SGCTIILTSRNRDLLEKD-MK--S-QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEG-LPVALST 363 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v~~~~-~~--~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~ 363 (1462)
.+..||.||......... .. . ...+.+...+.++..+++...+....... ......+++...| .|..|..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE--DVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT--TCCHHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC--cCCHHHHHHHcCCCCHHHHHH
Confidence 466777888765443111 11 2 24799999999999999998875322211 1124667777777 4544443
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.08 E-value=5.1e-05 Score=84.52 Aligned_cols=204 Identities=16% Similarity=0.139 Sum_probs=104.5
Q ss_pred ccchhHHHHHHHHH-------Hhc---cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHH
Q 046345 158 AFDSRMKVFQDVVE-------AAK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQD 227 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~-------~l~---~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 227 (1462)
.++|+.+.++.+.. .+. ....+.+.|+|++|+|||++|+.+++... .. .+.++.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~~---~~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--FP---FIKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--CS---EEEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CC---EEEEeCHHHh-------
Confidence 34565555444444 332 44567889999999999999999999852 22 2223322210
Q ss_pred HHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccc--------cCCCCccccccccCCCCCcEEEEE
Q 046345 228 KLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDV--------VGIPYGDVEKERKDDESGCTIILT 299 (1462)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~--------~~~~~~~l~~~~~~~~~gs~IlvT 299 (1462)
++. . ..........++......+..+|++||++....... +...+..+.+..........||.|
T Consensus 102 -----~g~--~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 102 -----IGF--S-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp -----TTC--C-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred -----cCC--c-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 000 0 001112233344433346788999999875311000 000000000000012233446667
Q ss_pred ecchhhhhh--ccCC-CceEEccCCCH-HHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC------chHHHHHHHHHh
Q 046345 300 SRNRDLLEK--DMKS-QKNFLIEVLSK-DEALQLFECIVGDSAKTSAIQPIADEIVERCEGL------PVALSTIANALK 369 (1462)
Q Consensus 300 tr~~~v~~~--~~~~-~~~~~l~~L~~-~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl------Plai~~~~~~l~ 369 (1462)
|........ .... ...+++.+++. ++-..++.+... -..+....|++.+.|. +-++.++-....
T Consensus 174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 776644321 1222 35788988888 666666554321 1245678888888873 333443333322
Q ss_pred cCCHHHHHHHHHHHhcCc
Q 046345 370 SKSLDFWKDALYRLRSSN 387 (1462)
Q Consensus 370 ~~~~~~w~~~~~~l~~~~ 387 (1462)
......+..+++.+....
T Consensus 248 ~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 248 MDPEYRVRKFLALLREEG 265 (272)
T ss_dssp SCGGGHHHHHHHHHHHTS
T ss_pred hchHHHHHHHHHHHHHcC
Confidence 224556666666665543
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.07 E-value=3.9e-05 Score=91.02 Aligned_cols=177 Identities=15% Similarity=0.222 Sum_probs=107.7
Q ss_pred CCccccchhHHHH---HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-CCHHHHHHHH
Q 046345 154 KDYEAFDSRMKVF---QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-PDHQKIQDKL 229 (1462)
Q Consensus 154 ~~~~~~~gr~~~~---~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 229 (1462)
.....++|++..+ ..+...+..+..+.+.|+|++|+||||+|+.+++... .. ++.++.. .....+ +.
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~--~~-----f~~l~a~~~~~~~i-r~- 93 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN--AD-----VERISAVTSGVKEI-RE- 93 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT--CE-----EEEEETTTCCHHHH-HH-
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC--CC-----eEEEEeccCCHHHH-HH-
Confidence 3456788999888 7888888888878899999999999999999999873 22 2222221 122221 11
Q ss_pred HHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEE-Eecchhh-
Q 046345 230 AFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIIL-TSRNRDL- 305 (1462)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~Ilv-Ttr~~~v- 305 (1462)
...........+++.+|++|++.... ..+.+ ...+. . ....+|. ||.+...
T Consensus 94 ----------------~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~L-------L~~le-~-~~v~lI~att~n~~~~ 148 (447)
T 3pvs_A 94 ----------------AIERARQNRNAGRRTILFVDEVHRFNKSQQDAF-------LPHIE-D-GTITFIGATTENPSFE 148 (447)
T ss_dssp ----------------HHHHHHHHHHTTCCEEEEEETTTCC------CC-------HHHHH-T-TSCEEEEEESSCGGGS
T ss_pred ----------------HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHH-------HHHHh-c-CceEEEecCCCCcccc
Confidence 11111112224678999999997642 11111 11111 1 2233443 4444422
Q ss_pred -hhhccCCCceEEccCCCHHHHHHHHHHHhCCC------CCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 306 -LEKDMKSQKNFLIEVLSKDEALQLFECIVGDS------AKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 306 -~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~------~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
.........++.+.+++.++...++.+.+... ....-..+..+.|++.++|.+..+..+
T Consensus 149 l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 149 LNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp SCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred cCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 12233445689999999999999998887431 111223567888999999988765443
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=1.7e-05 Score=96.95 Aligned_cols=197 Identities=11% Similarity=0.083 Sum_probs=109.4
Q ss_pred CccccchhHHHHHHHHHHhcc-----------------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEec
Q 046345 155 DYEAFDSRMKVFQDVVEAAKD-----------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVT 217 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 217 (1462)
....++|+++.++.+..++.. +..+.+.|+|++|+||||+|+.+++... + .++.++.+
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s 111 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNAS 111 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCC
Confidence 456789999999999999874 1346899999999999999999999872 1 24455555
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHH-HHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEE
Q 046345 218 QTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCER-LKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTI 296 (1462)
Q Consensus 218 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~I 296 (1462)
....... ....+........... ........ ....++.+||+||++....-+. ..+..+.+... . .+..|
T Consensus 112 ~~~~~~~-~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--~~l~~L~~~l~-~-~~~~i 182 (516)
T 1sxj_A 112 DVRSKTL-LNAGVKNALDNMSVVG----YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--GGVGQLAQFCR-K-TSTPL 182 (516)
T ss_dssp SCCCHHH-HHHTGGGGTTBCCSTT----TTTC----CCSSTTSEEEEECSGGGCCTTST--THHHHHHHHHH-H-CSSCE
T ss_pred CcchHHH-HHHHHHHHhccccHHH----HHhhhhhhhhccCCCeEEEEECCCccchhhH--HHHHHHHHHHH-h-cCCCE
Confidence 5444332 2222221111100000 00000000 0136788999999976422110 00011111111 1 23345
Q ss_pred EEEecchh--hhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC-chHHHHHHH
Q 046345 297 ILTSRNRD--LLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL-PVALSTIAN 366 (1462)
Q Consensus 297 lvTtr~~~--v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~~ 366 (1462)
|+++.... ...........+++.+++.++..+.+...+..... .-..+....|++.++|. +.++..+..
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 55554432 11112233457999999999999999877632111 11235678899999994 455555443
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.03 E-value=5.3e-05 Score=86.99 Aligned_cols=169 Identities=12% Similarity=0.114 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhcc--------------------CCCeEEEEEecCCC
Q 046345 162 RMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDK--------------------SFDKVVMAEVTQTP 220 (1462)
Q Consensus 162 r~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~ 220 (1462)
.++..+.+...+..++. +.+.++|+.|+|||++|+.+++...... ++| ..++.....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~- 84 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG- 84 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT-
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc-
Confidence 45667777777777664 4699999999999999999999874221 122 223322100
Q ss_pred CHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH----ccCcEEEEEcCCccccc--ccccCCCCccccccccCCCCCc
Q 046345 221 DHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLK----KEKKVLIILDNIWTKLE--LDVVGIPYGDVEKERKDDESGC 294 (1462)
Q Consensus 221 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~l~~~~~~~~~gs 294 (1462)
. .....+.++.+.+.+. .+++.++|+|+++.... .+.+ .+++.....++
T Consensus 85 -----------------~-~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naL-------Lk~lEep~~~~ 139 (334)
T 1a5t_A 85 -----------------K-NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANAL-------LKTLEEPPAET 139 (334)
T ss_dssp -----------------C-SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHH-------HHHHTSCCTTE
T ss_pred -----------------C-CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHH-------HHHhcCCCCCe
Confidence 0 0111222333333331 25678999999976421 1221 22222244567
Q ss_pred EEEEEecchh-hhhhccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 295 TIILTSRNRD-LLEKDMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 295 ~IlvTtr~~~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
.+|++|.+.. +..........+++.+++.++..+.+.+.. .-..+.+..+++.++|.|..+..
T Consensus 140 ~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 140 WFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred EEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 7777777654 322334455689999999999999998875 11245668899999999976544
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.01 E-value=0.00014 Score=80.49 Aligned_cols=187 Identities=14% Similarity=0.158 Sum_probs=99.6
Q ss_pred ccccchhHHHHHHHHHHh---cc---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 156 YEAFDSRMKVFQDVVEAA---KD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
...++|.+..++.+.+.+ .. ...+.+.|+|++|+|||++|+.+++... .. .+.++.+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CC---EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEechHHHHhh-
Confidence 345677777666665443 22 2335688999999999999999999773 22 334444332110
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc----------ccCCCCcccccccc--CCC
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD----------VVGIPYGDVEKERK--DDE 291 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~----------~~~~~~~~l~~~~~--~~~ 291 (1462)
. ..........++.......+.+|++||++....-. .....+..+...+. ...
T Consensus 79 -------------~--~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 -------------I--GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp -------------S--TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred -------------c--cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0 11112233344444444568999999997641100 00000001111000 022
Q ss_pred CCcEEEEEecchhhhhhc-cC--C-CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch-HHHH
Q 046345 292 SGCTIILTSRNRDLLEKD-MK--S-QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV-ALST 363 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v~~~~-~~--~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~ 363 (1462)
.+..||.||......... .. . ...+.+...+.++-.+++...+...............+++.+.|.+- .|..
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHH
Confidence 355666777655433111 11 2 35788999999999999988774222222222345778888887654 4433
No 178
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.99 E-value=0.00011 Score=83.47 Aligned_cols=189 Identities=14% Similarity=0.141 Sum_probs=107.7
Q ss_pred ccccchhHHHHHHHHHHhc------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 156 YEAFDSRMKVFQDVVEAAK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
...++|.++.++.+.+.+. ....+.+.++|++|+|||++|+.+++... .. ..+.++.+.-.+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh--
Confidence 4567788877777776653 12235789999999999999999999862 11 223344332211
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---------ccCCCCccccccccCCCCCc
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---------VVGIPYGDVEKERKDDESGC 294 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~~~~~gs 294 (1462)
.. ..........++......++.+|++||++....-. .+...+-...+.+.....+.
T Consensus 85 -----------~~---~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 -----------KW---LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -----------SS---CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -----------hh---hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 00 11123444555555555788999999997641100 00000000000000123455
Q ss_pred EEEEEecchhhhhh--ccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC-chHHHHHH
Q 046345 295 TIILTSRNRDLLEK--DMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL-PVALSTIA 365 (1462)
Q Consensus 295 ~IlvTtr~~~v~~~--~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 365 (1462)
.||.||........ ...-...+.+...+.++-.+++...+...... -.......|++.+.|. +-.|..+.
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666655433311 11233578999999999999999887533221 1245678899999886 44455444
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.98 E-value=0.00012 Score=84.90 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=107.1
Q ss_pred ccccchhHHHHHHHHHHhc------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 156 YEAFDSRMKVFQDVVEAAK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
...++|.+..++.+.+.+. ....+.+.|+|++|+|||++|+.+++... . ..+.++.+.-...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--A---TFFSISASSLTSK- 156 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--C---EEEEEEGGGGCCS-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--C---eEEEEehHHhhcc-
Confidence 3567899998888887764 23456889999999999999999998762 1 2344554322110
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc-------------ccccCCCCccccccccCC
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE-------------LDVVGIPYGDVEKERKDD 290 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~l~~~~~~~ 290 (1462)
. ..........++......++.+|++||++.... ...+. ..+.......
T Consensus 157 -------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL---~~l~~~~~~~ 218 (357)
T 3d8b_A 157 -------------W--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFL---VQLDGATTSS 218 (357)
T ss_dssp -------------S--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHH---HHHHC----C
T ss_pred -------------c--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHH---HHHhcccccC
Confidence 0 011223333444444446789999999964311 00110 0000000002
Q ss_pred CCCcEEEEEecchhhhh-hcc-CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccC-CchHHHHHHH
Q 046345 291 ESGCTIILTSRNRDLLE-KDM-KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEG-LPVALSTIAN 366 (1462)
Q Consensus 291 ~~gs~IlvTtr~~~v~~-~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~ 366 (1462)
..+..||.||....... ... .-...+.+...+.++..+++...+.... ..-..+....|++.+.| .+..|..+..
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-CCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23455666776543321 111 2234788999999999999988773221 11224667889999988 4555655543
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.96 E-value=6e-06 Score=90.54 Aligned_cols=175 Identities=14% Similarity=0.144 Sum_probs=103.2
Q ss_pred ccccchh---HHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 046345 156 YEAFDSR---MKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFD 232 (1462)
Q Consensus 156 ~~~~~gr---~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 232 (1462)
...|+|+ +..++.+..+...+..+.+.|+|++|+||||+|+.+++..... ...+.|++.....+. +.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~-- 96 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST-- 96 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG--
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH--
Confidence 3445552 4667777776665566789999999999999999999988532 234667766432110 00
Q ss_pred hCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc----ccccCCCCccccccccCCCCCcEEEEEecchhh-h-
Q 046345 233 LGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE----LDVVGIPYGDVEKERKDDESGCTIILTSRNRDL-L- 306 (1462)
Q Consensus 233 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v-~- 306 (1462)
.....+ .++.+||+||++.... .+.+...+.. .. .....++|+||+.... .
T Consensus 97 ----------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~----~~-~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 97 ----------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNR----VA-EQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp ----------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHH----HH-HHCSCEEEEEESSCTTTTT
T ss_pred ----------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHH----HH-HcCCCeEEEEcCCCHHHHH
Confidence 000111 3456999999876422 1111111110 00 1112247777764321 0
Q ss_pred ---hhc---cCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 307 ---EKD---MKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 307 ---~~~---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
... ......+++.+++.++..+++...+.... ..-..+..+.|++.++|.+..+..+
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHHHHHH
Confidence 001 11126899999999999999988773211 1233567888999999988766543
No 181
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.92 E-value=0.00015 Score=83.74 Aligned_cols=181 Identities=14% Similarity=0.153 Sum_probs=104.7
Q ss_pred CccccchhHHHHHHHHHHhcc-----CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKL 229 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~-----~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 229 (1462)
....++|+++.++.+..++.. ...+.|.|+|++|+|||++|+.+++... .. .+.++........
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~---~~~~~~~~~~~~~------ 95 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--AN---IKTTAAPMIEKSG------ 95 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CC---EEEEEGGGCCSHH------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEecchhccchh------
Confidence 456789999999988888763 3445789999999999999999988762 22 2333332221111
Q ss_pred HHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--ccccCCCCcc-----cc------ccccCCCCCcEE
Q 046345 230 AFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--LDVVGIPYGD-----VE------KERKDDESGCTI 296 (1462)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~-----l~------~~~~~~~~gs~I 296 (1462)
........ ..+..+|++|++..... ...+...+.. +. +......++..+
T Consensus 96 ----------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 96 ----------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ----------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ----------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11111111 24567889999875411 1111000000 00 000001123566
Q ss_pred EEEecchhhhh-hccCC-CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHHH
Q 046345 297 ILTSRNRDLLE-KDMKS-QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTIA 365 (1462)
Q Consensus 297 lvTtr~~~v~~-~~~~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 365 (1462)
|.+|....... ..... ...+++.+++.++..+++.+.+.... ..-..+..+.|++.++|.|..+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 66666543321 11222 36899999999999999988774221 11235677889999999996655443
No 182
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.91 E-value=4.7e-05 Score=89.60 Aligned_cols=168 Identities=11% Similarity=0.175 Sum_probs=85.9
Q ss_pred cEEEEccCCCCccCCcc-CCCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcE
Q 046345 520 PIAISLPHRDIEVLPER-LQCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQT 597 (1462)
Q Consensus 520 ~r~lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~ 597 (1462)
++.+.+..+.+..++.. ..+.+|+.+.+..+ +..++...|.++.+|+.+++..+ ++.++. .|.+ .+|+.
T Consensus 182 L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-------l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFVYAGIEEVLLPVT-------LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp CCEEECTTSCCSEECTTTTTTCCCSEEECCTT-------CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred CCeeecCCCcceEechhhEeecccCEEEeCCc-------hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 44455554444444432 23455555555322 34555555666666666666543 444433 3444 45666
Q ss_pred EEecCcccCC--ccccccccCCcEEEecCCCCC-----ccch-hhccccccCEEccCCcccccccCccccccccccceee
Q 046345 598 LCLHWCELED--IAIVGQLKKLEILSFRDSDIK-----ELPL-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELY 669 (1462)
Q Consensus 598 L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i~-----~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~ 669 (1462)
+.+. +.++. ...|.++.+|+.+++.++.+. .++. .+..+++|+.+.+.+ .+..++...|.++++|+.+.
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEE
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEE
Confidence 6663 23333 355666666666666655443 3332 345566666666664 35666666666666666666
Q ss_pred ccCcccccccccCCCccchHhhhcCCCCcEEEEEeecccC
Q 046345 670 MGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRDAEI 709 (1462)
Q Consensus 670 l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 709 (1462)
+..+... -....+.++ +|+.+.+..+....
T Consensus 330 lp~~l~~---------I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 330 IPANVTQ---------INFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp ECTTCCE---------ECTTSSSSS-CCCEEEECCSSCCB
T ss_pred ECccccE---------EcHHhCCCC-CCCEEEEcCCCCcc
Confidence 6443110 111334455 66666666554433
No 183
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.90 E-value=7.7e-05 Score=85.20 Aligned_cols=189 Identities=15% Similarity=0.140 Sum_probs=109.5
Q ss_pred CccccchhHHHHHHHHHHhc----------c--CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 155 DYEAFDSRMKVFQDVVEAAK----------D--DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~----------~--~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
....++|.+..++.+.+.+. . ...+-+.++|++|+|||++|+.+++... .. .+.++.+
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~---~~~v~~~----- 85 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSSS----- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CE---EEEEEHH-----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CC---EEEEchH-----
Confidence 34668899999888888772 1 1235789999999999999999999863 22 2333321
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---------ccCCCCccccccccCCCCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---------VVGIPYGDVEKERKDDESG 293 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~~~~~g 293 (1462)
.+ . +.. ..........++......++.+|++||++....-. .+...+-...+.......+
T Consensus 86 -~l----~---~~~---~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 -DL----V---SKW---MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HH----H---TTT---GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HH----h---hcc---cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 1 000 11223444555555555678899999997542100 0000000000011113345
Q ss_pred cEEEEEecchhhhhh--ccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC-chHHHHHH
Q 046345 294 CTIILTSRNRDLLEK--DMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL-PVALSTIA 365 (1462)
Q Consensus 294 s~IlvTtr~~~v~~~--~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 365 (1462)
..||.||........ ...-...+.+...+.++-.+++...+...... -..+....|++.+.|. +-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV-LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC-CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666667766544311 11223578899999999999999988643221 1245677888988874 54454443
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.90 E-value=3.6e-05 Score=91.67 Aligned_cols=176 Identities=14% Similarity=0.191 Sum_probs=100.6
Q ss_pred HHHHHHHHhccCC-ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcCh
Q 046345 165 VFQDVVEAAKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENT 243 (1462)
Q Consensus 165 ~~~~l~~~l~~~~-~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 243 (1462)
....+........ ...+.|+|++|+||||||+.+++.......-..+++++... +..++...+... .
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~-----~- 183 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVDSMKEG-----K- 183 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHHHHHTT-----C-
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHcc-----c-
Confidence 3444444444332 56899999999999999999999875321122355655432 333343333211 0
Q ss_pred HHHHHHHHHHHHccCcEEEEEcCCccccc----ccccCCCCccccccccCCCCCcEEEEEecchhhh--------hhccC
Q 046345 244 FQKAYRLCERLKKEKKVLIILDNIWTKLE----LDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL--------EKDMK 311 (1462)
Q Consensus 244 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~--------~~~~~ 311 (1462)
...+...+ ..+.-+|++||++.... .+.+...+..+ ...|..||+||++.... .....
T Consensus 184 ---~~~~~~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l------~~~~~~iIitt~~~~~~l~~l~~~L~sR~~ 253 (440)
T 2z4s_A 184 ---LNEFREKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNEL------HDSGKQIVICSDREPQKLSEFQDRLVSRFQ 253 (440)
T ss_dssp ---HHHHHHHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHH------HTTTCEEEEEESSCGGGCSSCCHHHHHHHH
T ss_pred ---HHHHHHHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHH------HHCCCeEEEEECCCHHHHHHHHHHHHhhcc
Confidence 11122222 12667999999976532 11111111110 23467888888863221 11122
Q ss_pred CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 312 SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 312 ~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
....+.+.+++.++..+++.+.+.... ..-..+....|++.++|.+..+.-
T Consensus 254 ~g~~i~l~~p~~e~r~~iL~~~~~~~~-~~i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 254 MGLVAKLEPPDEETRKSIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp SSBCCBCCCCCHHHHHHHHHHHHHHHT-CCCCTTHHHHHHHHCCSCHHHHHH
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHH
Confidence 335789999999999999988773111 111235677889999998865543
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.89 E-value=0.00031 Score=79.34 Aligned_cols=187 Identities=11% Similarity=0.116 Sum_probs=105.9
Q ss_pred ccccchhHHHHHHHHHHhcc------------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 156 YEAFDSRMKVFQDVVEAAKD------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
...++|.++.++.+.+.+.. ...+.+.|+|++|+||||+|+.+++... . ..+.++.+.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--A---TFLNISAASLTS-- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--C---EEEEEESTTTSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--C---CeEEeeHHHHhh--
Confidence 45688999988888877632 2345889999999999999999998762 1 223344332211
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccC--CCCc----ccc---ccccC--CCC
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVG--IPYG----DVE---KERKD--DES 292 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~--~~~~----~l~---~~~~~--~~~ 292 (1462)
.. ..........++......++.+|++||++....-.... .... .+. +.... .+.
T Consensus 93 ------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 ------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 11223344444444445678899999997642210000 0000 000 00000 123
Q ss_pred CcEEEEEecchhhhhh--ccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch-HHHHH
Q 046345 293 GCTIILTSRNRDLLEK--DMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV-ALSTI 364 (1462)
Q Consensus 293 gs~IlvTtr~~~v~~~--~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 364 (1462)
+..||.||........ ...-...+.+...+.++..+++...+.... ..-..+....|++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG-SPLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS-CCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 4566667776533211 112235788888889888888887764221 11224567889999988875 44443
No 186
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=6.7e-06 Score=82.54 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=21.6
Q ss_pred ccceeeecCCccccccccCCcccccccccCCCccEEEEeccCCccee
Q 046345 1009 KLYALQLTGLTQLTSFANMGHFHSHSVVEFPSLLKLEIIDCHIMLRF 1055 (1462)
Q Consensus 1009 ~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 1055 (1462)
+|++|+|++|+++++-.... +..+++|++|++++|+++++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~------L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIA------LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHH------GGGCTTCCEEEEESCTTCCCH
T ss_pred CCCEEEcCCCCcCCHHHHHH------HhcCCCCCEEECCCCCCCCch
Confidence 45555555555544422211 233566777777777666653
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.87 E-value=0.00031 Score=82.56 Aligned_cols=189 Identities=12% Similarity=0.148 Sum_probs=105.7
Q ss_pred CccccchhHHHHHHHHHHhc------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 155 DYEAFDSRMKVFQDVVEAAK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
....++|++..++.+..++. ....+.+.|+|++|+|||++|+.+++... . ..+.++.+.-...
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~---~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--A---TFFNISAASLTSK 187 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--C---EEEEECSCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--C---cEEEeeHHHhhcc
Confidence 34678899999999988773 12245889999999999999999988752 1 2333333322110
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccc---------cccCCCC-ccccccccCCCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL---------DVVGIPY-GDVEKERKDDES 292 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---------~~~~~~~-~~l~~~~~~~~~ 292 (1462)
. ..........++......++.+|++||++....- ..+...+ ..+.........
T Consensus 188 --~--------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 188 --Y--------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred --c--------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 0011233344444444456789999999754110 0000000 000000000123
Q ss_pred CcEEEEEecchhhhh-hccCCC-ceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch-HHHHHH
Q 046345 293 GCTIILTSRNRDLLE-KDMKSQ-KNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV-ALSTIA 365 (1462)
Q Consensus 293 gs~IlvTtr~~~v~~-~~~~~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 365 (1462)
...||.||....... ...... ..+.+...+.++..+++...+..... .-..+....|++.+.|..- +|..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455666666543331 112223 47899999999999999888753221 2234567889999988554 554443
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=1.6e-05 Score=91.65 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=79.4
Q ss_pred hhhhcCCcceEEEecCCCCCCCCcccCCCCcCcEEEecCcccCC--ccccc--cccCCcEEEecCC--C------CCccc
Q 046345 564 LFFEGTEGLKVLDFTGIHFSSLPSSLGRLTSLQTLCLHWCELED--IAIVG--QLKKLEILSFRDS--D------IKELP 631 (1462)
Q Consensus 564 ~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~--~L~~L~~L~L~~~--~------i~~lp 631 (1462)
.++..+++|+.|+|+++.-..+|. +. +.+|+.|+|..|.+.. ...+. .+++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 456777888888887774234444 33 6788888888777655 34444 6788888887531 1 22222
Q ss_pred hhh--ccccccCEEccCCcccccccCcccc---ccccccceeeccCcccccccccCCCccchHhhhcCCCCcEEEEEeec
Q 046345 632 LEI--GLLTRLSLLDLSDCWSLEVIAPNVI---SKLSRLEELYMGGSFSQWDKVEGGSNARLDELKELSKLTTLEIHVRD 706 (1462)
Q Consensus 632 ~~i--~~L~~L~~L~L~~~~~l~~~p~~~l---~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 706 (1462)
..+ ..+++|++|++.+|......+.. + ..+++|++|+++.|.+.... .......+.++++|+.|+++.|.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~G----~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEM-FLESDILPQLETMDISAGVLTDEG----ARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHH-HHHCSSGGGCSEEECCSSCCBHHH----HHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHH-HHhCccCCCCCEEECCCCCCChHH----HHHHHhhcccCCcceEEECCCCc
Confidence 222 24678888888776322111111 2 24678888888776542100 01123344567788888887664
Q ss_pred c
Q 046345 707 A 707 (1462)
Q Consensus 707 ~ 707 (1462)
+
T Consensus 319 i 319 (362)
T 2ra8_A 319 L 319 (362)
T ss_dssp C
T ss_pred C
Confidence 3
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.83 E-value=7.3e-05 Score=85.83 Aligned_cols=177 Identities=12% Similarity=0.083 Sum_probs=101.5
Q ss_pred CccccchhHHHHHHHHHHhccCCc-eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDL 233 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 233 (1462)
....++|+++.++.+..++..+.. +++.+.|++|+|||++|+.+++... ..++.++.+.. ....+ ...+..+
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~~i-~~~~~~~ 96 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KIDFV-RGPLTNF 96 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHHHH-HTHHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHHHH-HHHHHHH
Confidence 456788999999999999987654 4667778899999999999998772 12444543331 12211 1111110
Q ss_pred CCCCCCCcChHHHHHHHHHHH-HccCcEEEEEcCCcccc---cccccCCCCccccccccCCCCCcEEEEEecchhhh-hh
Q 046345 234 GMEFGLNENTFQKAYRLCERL-KKEKKVLIILDNIWTKL---ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL-EK 308 (1462)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~---~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~-~~ 308 (1462)
.... ..+++.++|+||++... ..+.+. +++.....+.++|+||...... ..
T Consensus 97 -----------------~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~-------~~le~~~~~~~iI~~~n~~~~l~~~ 152 (324)
T 3u61_B 97 -----------------ASAASFDGRQKVIVIDEFDRSGLAESQRHLR-------SFMEAYSSNCSIIITANNIDGIIKP 152 (324)
T ss_dssp -----------------HHBCCCSSCEEEEEEESCCCGGGHHHHHHHH-------HHHHHHGGGCEEEEEESSGGGSCTT
T ss_pred -----------------HhhcccCCCCeEEEEECCcccCcHHHHHHHH-------HHHHhCCCCcEEEEEeCCccccCHH
Confidence 0000 01377899999997653 112211 1111123456788888765432 11
Q ss_pred ccCCCceEEccCCCHHHHHHHH-------HHHhCCCCCCCCchHHHHHHHHHccCCchHHH
Q 046345 309 DMKSQKNFLIEVLSKDEALQLF-------ECIVGDSAKTSAIQPIADEIVERCEGLPVALS 362 (1462)
Q Consensus 309 ~~~~~~~~~l~~L~~~ea~~lf-------~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 362 (1462)
.......+++.+++.++-.+++ .+.+......-...+....|++.++|.+..+.
T Consensus 153 l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 153 LQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence 1223357999999988854333 22221111111112778889999988776443
No 190
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=1.2e-05 Score=80.76 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=20.9
Q ss_pred cceeEEeeeccccccccccccchhhhHHHHHHHhhccceEEEEecCCCcc
Q 046345 1209 KLCKVQMIENEEDDLHHWEGNLNSTIQKHYEEMCLNNLEVLEVRNCDSLE 1258 (1462)
Q Consensus 1209 ~L~~L~l~~c~~~~~~~~~~~l~~~~~~~~~~~~l~~L~~L~i~~c~~l~ 1258 (1462)
+|++|++++|. ++++.....+. . +++|++|++++|+.++
T Consensus 115 ~L~~L~Ls~C~---------~ITD~Gl~~L~-~-~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCG---------NVTDKGIIALH-H-FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCT---------TCCHHHHHHGG-G-CTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCC---------cCCHHHHHHHh-c-CCCCCEEECCCCCCCC
Confidence 56666666665 55554333332 2 5666666666666444
No 191
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.79 E-value=9.7e-05 Score=86.64 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=37.9
Q ss_pred ccccchhHHHHHH---HHHHhccCCc--eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 156 YEAFDSRMKVFQD---VVEAAKDDKL--NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 156 ~~~~~gr~~~~~~---l~~~l~~~~~--~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
...++|++...+. +...+..+.. +.+.|+|++|+|||++|+.+++...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999888665 4555555443 4899999999999999999999984
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.78 E-value=0.00012 Score=84.52 Aligned_cols=188 Identities=15% Similarity=0.148 Sum_probs=105.3
Q ss_pred ccccchhHHHHHHHHHHhc------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 156 YEAFDSRMKVFQDVVEAAK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
...++|.+..++.+.+.+. ....+-|.|+|++|+|||++|+.+++... .. .+.++.+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~v~~~------ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSSS------ 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CE---EEEEEHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CC---EEEeeHH------
Confidence 4567888888888887762 11234588999999999999999999873 22 2333322
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccc---------cccCCCCccccccccCCCCCc
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL---------DVVGIPYGDVEKERKDDESGC 294 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---------~~~~~~~~~l~~~~~~~~~gs 294 (1462)
.+. +... .........++......++.+|++||++....- ..+...+-...+.......+.
T Consensus 119 ~l~-------~~~~---g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 DLV-------SKWM---GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp HHH-------SCC------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred HHh-------hhhc---chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 111 1100 112233444555444568899999999754210 000000000000000123455
Q ss_pred EEEEEecchhhhhh--ccCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC-chHHHHHH
Q 046345 295 TIILTSRNRDLLEK--DMKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL-PVALSTIA 365 (1462)
Q Consensus 295 ~IlvTtr~~~v~~~--~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 365 (1462)
.||.||........ ...-...+.+...+.++-.+++..++...... -.......|++.+.|. +-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV-LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66667765533211 11233578899999999999999888533211 1245677899999884 44455443
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.77 E-value=0.0004 Score=82.80 Aligned_cols=186 Identities=17% Similarity=0.200 Sum_probs=105.0
Q ss_pred CccccchhHHHHHHHHHHhc------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 155 DYEAFDSRMKVFQDVVEAAK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
....++|.+...+.+.+.+. ....+.+.|+|++|+|||++|+.+++... .. -++.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~~-----~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS-----TFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-SS-----EEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-CC-----CEEEEeHHH--
Confidence 34567898888888887762 12346889999999999999999999862 11 123332221
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccc-------------cccCCCCccccccccC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL-------------DVVGIPYGDVEKERKD 289 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-------------~~~~~~~~~l~~~~~~ 289 (1462)
+... ..+. .. .....++......++.+|++|+++....- ..+...+.. +..
T Consensus 204 --l~~~---~~g~----~~---~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~----~~~ 267 (444)
T 2zan_A 204 --LVSK---WLGE----SE---KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG----VGV 267 (444)
T ss_dssp -----------------CC---CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC----SSC
T ss_pred --HHhh---hcch----HH---HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC----ccc
Confidence 1110 0111 01 11233444444467899999999754110 001111110 001
Q ss_pred CCCCcEEEEEecchhhhhh-cc-CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC-chHHHHHH
Q 046345 290 DESGCTIILTSRNRDLLEK-DM-KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL-PVALSTIA 365 (1462)
Q Consensus 290 ~~~gs~IlvTtr~~~v~~~-~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 365 (1462)
...+..||.||........ .. .-...+.+...+.++...+|...+...... -.......|++.+.|. +-.|..+.
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS-LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345667777765543311 11 223578899999999999998887532211 1245677899999884 44454443
No 194
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.75 E-value=0.00062 Score=76.74 Aligned_cols=182 Identities=13% Similarity=0.201 Sum_probs=101.1
Q ss_pred ccccchhHHHHHHHHHHhcc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...++|.++.++.+.+++.. ...+.+.|+|++|+|||++|+.+++... .. .+.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~---~i~v~------~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN---FISIK------G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CE---EEEEC------H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CC---EEEEE------h
Confidence 45578888877777766541 3345789999999999999999999763 22 22222 2
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc-----ccCCC----Ccccccccc--CCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD-----VVGIP----YGDVEKERK--DDE 291 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~-----~~~~~----~~~l~~~~~--~~~ 291 (1462)
..+.... ++.. ......+++......+.++++|+++....-. .-... ...++..+. ...
T Consensus 83 ~~l~~~~---~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 83 PELLTMW---FGES-------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHH---HTTC-------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred HHHHhhh---cCch-------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 2333222 1211 1123344444444678999999997531100 00000 001111110 123
Q ss_pred CCcEEEEEecchhhhhhc-cC---CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchH
Q 046345 292 SGCTIILTSRNRDLLEKD-MK---SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVA 360 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v~~~~-~~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 360 (1462)
.+..||.||......... .. -...+.+...+.++-.+++...+.......+. ....+++.+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 456777777765433211 11 23578999999999999998887532211111 134566677777654
No 195
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.75 E-value=7.7e-05 Score=85.03 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=85.0
Q ss_pred ccchhHHHHHHHHHHhc---------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 158 AFDSRMKVFQDVVEAAK---------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~---------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
.++|.++.++.+.+.+. ......+.|+|++|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 36787777777765543 233447899999999999999999998754332221122333210
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc-------ccccCCCCccccccccCCCCCcE
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE-------LDVVGIPYGDVEKERKDDESGCT 295 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------~~~~~~~~~~l~~~~~~~~~gs~ 295 (1462)
.+.... ..........++.. .+.-+|++||++.... .... ...+.+.+.....+..
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEA---IEILLQVMENNRDDLV 171 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHH---HHHHHHHHHHCTTTCE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHH---HHHHHHHHhcCCCCEE
Confidence 000000 11112222233332 2345999999974310 0000 0111111112445667
Q ss_pred EEEEecchhhh------hhcc-CCCceEEccCCCHHHHHHHHHHHhC
Q 046345 296 IILTSRNRDLL------EKDM-KSQKNFLIEVLSKDEALQLFECIVG 335 (1462)
Q Consensus 296 IlvTtr~~~v~------~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~ 335 (1462)
||+||...... .... .....+.+.+++.++-.+++...+.
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 77777543211 0011 1126899999999999999987763
No 196
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=1.4e-05 Score=82.86 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=73.3
Q ss_pred hhhhcCCcceEEEecCC-CCCC-----CCcccCCCCcCcEEEecCcccCC------ccccccccCCcEEEecCCCCCc--
Q 046345 564 LFFEGTEGLKVLDFTGI-HFSS-----LPSSLGRLTSLQTLCLHWCELED------IAIVGQLKKLEILSFRDSDIKE-- 629 (1462)
Q Consensus 564 ~~f~~l~~Lr~L~Ls~~-~i~~-----lp~~i~~L~~Lr~L~L~~~~l~~------~~~i~~L~~L~~L~L~~~~i~~-- 629 (1462)
..+...+.|+.|+|++| .+.. +...+....+|++|+|++|.+.. ...+...++|++|+|++|.|..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34667788888888888 7752 45566777888888888888765 1345556778888888887763
Q ss_pred ---cchhhccccccCEEcc--CCcccccccCc----cccccccccceeeccCccc
Q 046345 630 ---LPLEIGLLTRLSLLDL--SDCWSLEVIAP----NVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 630 ---lp~~i~~L~~L~~L~L--~~~~~l~~~p~----~~l~~L~~L~~L~l~~~~~ 675 (1462)
+...+...++|++|++ ++| .+..... ..+...++|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4455666677888888 555 3433211 1134446677777666543
No 197
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00067 Score=77.50 Aligned_cols=181 Identities=14% Similarity=0.159 Sum_probs=104.8
Q ss_pred CccccchhHHHHHHHHHHhc-------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCC
Q 046345 155 DYEAFDSRMKVFQDVVEAAK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPD 221 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 221 (1462)
....+.|-++.++.|.+.+. -...+-|.++|++|+|||.||+++++... .. .+.++.+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--~~---f~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--CK---FIRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--CE---EEEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--CC---ceEEEhHHhhc
Confidence 34556677777766665543 12345688999999999999999999883 22 23444332211
Q ss_pred HHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---------ccCCCCcccccccc--CC
Q 046345 222 HQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---------VVGIPYGDVEKERK--DD 290 (1462)
Q Consensus 222 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~--~~ 290 (1462)
.. .......+..++.......+++|.+|+++....-. .....+..++..+- ..
T Consensus 221 -------------k~---vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 -------------KY---IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp -------------SS---TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred -------------cc---cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 00 11223445566666656789999999997531100 00000001111100 13
Q ss_pred CCCcEEEEEecchhhhhhcc----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 291 ESGCTIILTSRNRDLLEKDM----KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 291 ~~gs~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
..+..||.||...+....+. .-...+++..-+.++-.++|+.+.......++. -...|++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 34556777777665542221 234589999999999999998887533222211 1456788887754
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.72 E-value=6e-05 Score=78.52 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=42.9
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
...++||+++++.+...+.....+.+.|+|++|+|||++|+.+++...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999877667889999999999999999999874
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.71 E-value=0.00019 Score=86.16 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=87.4
Q ss_pred ccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCC----C-eEEEEEecCCCCHHHHHHHHH
Q 046345 156 YEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSF----D-KVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f----~-~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
...++||+++++.+...+......-+.|+|++|+|||++|+.+++........ + .++.++.+.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------------ 246 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------------ 246 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc------------
Confidence 45689999999999999976655677899999999999999999987422111 1 123333220
Q ss_pred HHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhh-----
Q 046345 231 FDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDL----- 305 (1462)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v----- 305 (1462)
. . .. ........++......++.+|++| ........+...+ .....++|.+|.....
T Consensus 247 ~-~---~g---~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L---------~~g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 247 K-Y---RG---EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL---------ARGELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT---------TSSSCEEEEECCTTTTHHHHT
T ss_pred c-c---cc---hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhh---------cCCCEEEEecCCHHHHHHHhh
Confidence 0 0 00 001223344555545678899999 1111111121111 1224556666654431
Q ss_pred -hhhccCCCceEEccCCCHHHHHHHHHHHhC
Q 046345 306 -LEKDMKSQKNFLIEVLSKDEALQLFECIVG 335 (1462)
Q Consensus 306 -~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~ 335 (1462)
-.........+.++..+.++..+++.....
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 111122345799999999999999997763
No 200
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=0.00012 Score=82.02 Aligned_cols=147 Identities=13% Similarity=0.046 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhc--cCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCC
Q 046345 161 SRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMED--KSFDKVVMAEVTQ-TPDHQKIQDKLAFDLGMEF 237 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 237 (1462)
|.++.++.+...+.+++.+.+.++|+.|+||||+|+.+++..... .+.+. .+++.+. ...+..+ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 455667788888887778899999999999999999999853211 23333 4454432 2232222 22333332211
Q ss_pred CCCcChHHHHHHHHHHHHccCcEEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCce
Q 046345 238 GLNENTFQKAYRLCERLKKEKKVLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKN 315 (1462)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~ 315 (1462)
. .+++-++|+|+++... ..+++ .+++....+.+.+|++|.++.-........ .
T Consensus 79 ~-----------------~~~~kvviIdead~lt~~a~naL-------Lk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~ 133 (305)
T 2gno_A 79 E-----------------LYTRKYVIVHDCERMTQQAANAF-------LKALEEPPEYAVIVLNTRRWHYLLPTIKSR-V 133 (305)
T ss_dssp S-----------------SSSSEEEEETTGGGBCHHHHHHT-------HHHHHSCCTTEEEEEEESCGGGSCHHHHTT-S
T ss_pred c-----------------cCCceEEEeccHHHhCHHHHHHH-------HHHHhCCCCCeEEEEEECChHhChHHHHce-e
Confidence 1 2567899999997642 22222 222222456777887776554331222223 9
Q ss_pred EEccCCCHHHHHHHHHHHh
Q 046345 316 FLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 316 ~~l~~L~~~ea~~lf~~~~ 334 (1462)
+++.++++++..+.+.+..
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998876
No 201
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.67 E-value=0.0016 Score=71.52 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=97.5
Q ss_pred ccccchhHHHHHHHHHH---hcc---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 156 YEAFDSRMKVFQDVVEA---AKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~---l~~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
...++|.++.++.+.+. +.. ...+-+.|+|++|+||||+|+.+++... .. .+.++.+.-.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~i~~~~~~~~- 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VP---FFTISGSDFVEM- 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CC---EEEECSCSSTTS-
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CC---EEEEeHHHHHHH-
Confidence 45577877766665543 321 1234688999999999999999998773 22 233332221110
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc--ccCCCC-------cccccccc--CCCC
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD--VVGIPY-------GDVEKERK--DDES 292 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~--~~~~~~-------~~l~~~~~--~~~~ 292 (1462)
. ..........+++......+.++++|+++....-. ...... ..+...+. ....
T Consensus 85 ------------~---~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 85 ------------F---VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp ------------C---CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred ------------h---hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 0 01112334445555444567899999985431100 000000 00000000 0234
Q ss_pred CcEEEEEecchhhhhhc-cC---CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccC-CchHHHH
Q 046345 293 GCTIILTSRNRDLLEKD-MK---SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEG-LPVALST 363 (1462)
Q Consensus 293 gs~IlvTtr~~~v~~~~-~~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~ 363 (1462)
+..||.||......... .. -...+.+...+.++-.+++..+.......++ .....+++...| .+.-+..
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHHH
Confidence 55677777665433111 11 2347888888988888888877643221111 123457777777 6655443
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.62 E-value=5.3e-05 Score=82.42 Aligned_cols=79 Identities=23% Similarity=0.207 Sum_probs=57.3
Q ss_pred hhcCCcceEEEecCCCCCCCC---cccCCCCcCcEEEecCcccCCcccccccc--CCcEEEecCCCCC-ccc-------h
Q 046345 566 FEGTEGLKVLDFTGIHFSSLP---SSLGRLTSLQTLCLHWCELEDIAIVGQLK--KLEILSFRDSDIK-ELP-------L 632 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~~i~~lp---~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~--~L~~L~L~~~~i~-~lp-------~ 632 (1462)
..++++|+.|+|++|.|+.++ ..+..+++|++|+|++|.++....+..+. +|++|+|++|.+. .+| .
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456788888888888887653 55678888888888888887755555555 7888888888776 343 1
Q ss_pred hhccccccCEEc
Q 046345 633 EIGLLTRLSLLD 644 (1462)
Q Consensus 633 ~i~~L~~L~~L~ 644 (1462)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 255677777775
No 203
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.61 E-value=3.6e-05 Score=79.64 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHhcc---CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 046345 161 SRMKVFQDVVEAAKD---DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEF 237 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~---~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 237 (1462)
++.+.++.+..++.+ .....+.|+|++|+||||||+.+++.......+. +++++ ..++...+........
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCch
Confidence 355666666666543 2235899999999999999999999985333322 23333 3444444443332111
Q ss_pred CCCcChHHHHHHHHHHHHccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 238 GLNENTFQKAYRLCERLKKEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
. . ...+.+ .+.-+||+||++.. ..|..- .+..+.+.+ ...|..||+||+..
T Consensus 91 ~----~-----~~~~~~--~~~~llilDE~~~~~~~~~~~~--~l~~ll~~~--~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 D----T-----KFLKTV--LNSPVLVLDDLGSERLSDWQRE--LISYIITYR--YNNLKSTIITTNYS 143 (180)
T ss_dssp C----S-----HHHHHH--HTCSEEEEETCSSSCCCHHHHH--HHHHHHHHH--HHTTCEEEEECCCC
T ss_pred H----H-----HHHHHh--cCCCEEEEeCCCCCcCCHHHHH--HHHHHHHHH--HHcCCCEEEEcCCC
Confidence 1 0 222333 25669999999742 222211 011111111 22467899998764
No 204
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.60 E-value=0.0015 Score=77.01 Aligned_cols=110 Identities=12% Similarity=0.154 Sum_probs=64.5
Q ss_pred cccChhhhhcCC-cceEEEecCCCCCCCC-cccCCCCcCcEEEecCcc---cCC--ccccccccCCcEEEecCCCCCccc
Q 046345 559 MQMSDLFFEGTE-GLKVLDFTGIHFSSLP-SSLGRLTSLQTLCLHWCE---LED--IAIVGQLKKLEILSFRDSDIKELP 631 (1462)
Q Consensus 559 ~~l~~~~f~~l~-~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~---l~~--~~~i~~L~~L~~L~L~~~~i~~lp 631 (1462)
..|.+..|.+++ .|+.+.+..+ ++.+. .+|.++.+|+.+.+..+. ++. ...|.++.+|+.+.+.. +++.++
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceeh
Confidence 455566676664 4777777543 55564 356777777777776553 333 24555666666655543 344444
Q ss_pred h-hhccccccCEEccCCcccccccCccccccccccceeeccC
Q 046345 632 L-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGG 672 (1462)
Q Consensus 632 ~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 672 (1462)
. .+..+.+|+.+.+.. .+..++...+..+.+|+.+.+..
T Consensus 130 ~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhhcccccccccc--eeeeecccceecccccccccccc
Confidence 3 345666777777664 34556655566667777666544
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.59 E-value=0.00026 Score=92.18 Aligned_cols=182 Identities=10% Similarity=0.131 Sum_probs=99.0
Q ss_pred CCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC-----CCeEEEEEecCCCCHHHHHHH
Q 046345 154 KDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS-----FDKVVMAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~ 228 (1462)
.....++||+++++++...+..+..+.+.++|++|+|||++|+.+++....... -..+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 345668999999999999998766667899999999999999999998743211 11244444322110
Q ss_pred HHHHhCCCCCCCcChHHHHHHHHHHHHc-cCcEEEEEcCCccccc-------ccccCCCCccccccccCCCCCcEEEEEe
Q 046345 229 LAFDLGMEFGLNENTFQKAYRLCERLKK-EKKVLIILDNIWTKLE-------LDVVGIPYGDVEKERKDDESGCTIILTS 300 (1462)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~-------~~~~~~~~~~l~~~~~~~~~gs~IlvTt 300 (1462)
+... .....+....+...+.. +++.+|++||+..... ++.. ..+.. .+ ...+..+|.+|
T Consensus 240 -----g~~~--~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~-~~L~~---~l--~~~~i~~I~at 306 (854)
T 1qvr_A 240 -----GAKY--RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAG-NMLKP---AL--ARGELRLIGAT 306 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HH---HH--HTTCCCEEEEE
T ss_pred -----cCcc--chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHH-HHHHH---HH--hCCCeEEEEec
Confidence 0000 11233445555555543 4789999999976421 1111 11111 11 11234455555
Q ss_pred cchhh-----hhhccCCCceEEccCCCHHHHHHHHHHHhCC---CCCCCCchHHHHHHHHHcc
Q 046345 301 RNRDL-----LEKDMKSQKNFLIEVLSKDEALQLFECIVGD---SAKTSAIQPIADEIVERCE 355 (1462)
Q Consensus 301 r~~~v-----~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~ 355 (1462)
..... ..........+.+++++.++..+++...... .....-..+....+++.+.
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 43322 1112233456999999999999999755420 0111112345555666553
No 206
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0016 Score=74.49 Aligned_cols=180 Identities=13% Similarity=0.169 Sum_probs=101.7
Q ss_pred ccccchhHHHHHHHHHHhc----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...+.|-++.++.|.+.+. . ...+-|.++|++|+|||.+|+++++... .. .+.++.+.-.+
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~---fi~v~~s~l~s- 254 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--AT---FLRIVGSELIQ- 254 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CE---EEEEESGGGCC-
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CC---EEEEEHHHhhh-
Confidence 3455676776666665543 1 2346789999999999999999999984 22 23333332111
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccc---------cCCCCcccccccc--CCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDV---------VGIPYGDVEKERK--DDE 291 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~---------~~~~~~~l~~~~~--~~~ 291 (1462)
.. ....+..+..++.......+.+|.+|+++....-.. ....+..++...- ...
T Consensus 255 ------------k~---vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 255 ------------KY---LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp ------------SS---SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred ------------cc---CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 00 112234455566655567899999999875311000 0000001111100 123
Q ss_pred CCcEEEEEecchhhhhhccC---C-CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 292 SGCTIILTSRNRDLLEKDMK---S-QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v~~~~~~---~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
.+..||.||...+....+.- . ...+.+..-+.++-.++|+.+.......++. -...||+.+.|.-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 45567777777666532221 1 2468888889999999998887533222111 1356777777753
No 207
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.56 E-value=0.00029 Score=80.66 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=94.4
Q ss_pred HHHHHHHHHhccC--CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCc
Q 046345 164 KVFQDVVEAAKDD--KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNE 241 (1462)
Q Consensus 164 ~~~~~l~~~l~~~--~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 241 (1462)
.....+......+ ....+.|+|++|+||||||+.+++..... . ..+++++.. .+...+...+...
T Consensus 21 ~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~~------~~~~~~~~~~~~~----- 87 (324)
T 1l8q_A 21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSAD------DFAQAMVEHLKKG----- 87 (324)
T ss_dssp HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEHH------HHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEHH------HHHHHHHHHHHcC-----
Confidence 3444455544443 34578999999999999999999988532 1 234555532 2333333222110
Q ss_pred ChHHHHHHHHHHHHccCcEEEEEcCCccccc---c-cccCCCCccccccccCCCCCcEEEEEecchhhh--------hhc
Q 046345 242 NTFQKAYRLCERLKKEKKVLIILDNIWTKLE---L-DVVGIPYGDVEKERKDDESGCTIILTSRNRDLL--------EKD 309 (1462)
Q Consensus 242 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~--------~~~ 309 (1462)
........+ .+.-+|++||+..... + +.+...+..+ ...|..||+||.+.... ...
T Consensus 88 ----~~~~~~~~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~------~~~~~~iii~~~~~~~~l~~l~~~L~sR 155 (324)
T 1l8q_A 88 ----TINEFRNMY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTL------YLLEKQIILASDRHPQKLDGVSDRLVSR 155 (324)
T ss_dssp ----CHHHHHHHH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHH------HHTTCEEEEEESSCGGGCTTSCHHHHHH
T ss_pred ----cHHHHHHHh--cCCCEEEEcCcccccCChHHHHHHHHHHHHH------HHCCCeEEEEecCChHHHHHhhhHhhhc
Confidence 011122222 2466999999976432 1 1111111110 12456788887644221 112
Q ss_pred cCCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchH
Q 046345 310 MKSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVA 360 (1462)
Q Consensus 310 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 360 (1462)
......+++.+ +.++..+++...+.... ..-..+....|++.+ |.+..
T Consensus 156 ~~~~~~i~l~~-~~~e~~~il~~~~~~~~-~~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 156 FEGGILVEIEL-DNKTRFKIIKEKLKEFN-LELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHTSEEEECCC-CHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHC-SSHHH
T ss_pred ccCceEEEeCC-CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhC-CCHHH
Confidence 22335799999 99999999988773211 122356778888888 76543
No 208
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.55 E-value=0.0008 Score=77.05 Aligned_cols=182 Identities=16% Similarity=0.169 Sum_probs=97.0
Q ss_pred cCCccccchhHHHHHHHHHHhccC-----CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDD-----KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQD 227 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 227 (1462)
+.....++|++..++.+...+..+ ....+.++|++|+||||||+.+++... ..| ...+..-.....+
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~--~~~---~~~sg~~~~~~~~--- 92 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ--TNI---HVTSGPVLVKQGD--- 92 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT--CCE---EEEETTTCCSHHH---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEechHhcCHHH---
Confidence 445677889988888888777532 335799999999999999999999873 111 1111111111111
Q ss_pred HHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--ccccCCCCcc----c-------cccccCCCCCc
Q 046345 228 KLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--LDVVGIPYGD----V-------EKERKDDESGC 294 (1462)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~----l-------~~~~~~~~~gs 294 (1462)
...+...+ .++.++++|++..... .+.+...... + .+.....-...
T Consensus 93 -------------------l~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 93 -------------------MAAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -------------------HHHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred -------------------HHHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 11111111 2345777788754311 1111000000 0 00000000112
Q ss_pred EEE-EEecchhhhhhcc-CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHHH
Q 046345 295 TII-LTSRNRDLLEKDM-KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALSTI 364 (1462)
Q Consensus 295 ~Il-vTtr~~~v~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 364 (1462)
.++ .|++...+-.... .......+++.+.++-.+++.+.+... ...-..+.+..|+++++|.|..+..+
T Consensus 152 ~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~-~~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM-DVEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT-TCCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 233 3443322211111 112368999999999999998876321 12233577899999999999765443
No 209
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0014 Score=76.30 Aligned_cols=180 Identities=15% Similarity=0.210 Sum_probs=102.6
Q ss_pred ccccchhHHHHHHHHHHhc-------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...+.|-++.++.|.+.+. -...+-|.++|++|+|||++|+++++... .. .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--AN---FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CE---EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CC---EEEEehhhhcc-
Confidence 4456677777766665543 12346789999999999999999999883 22 33444433221
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---------ccCCCCccccccc--cCCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---------VVGIPYGDVEKER--KDDE 291 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~--~~~~ 291 (1462)
.. .......+..++.......+.+|++|+++....-. .....+..++... ....
T Consensus 254 ------------k~---~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 ------------KY---IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp ------------SS---SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred ------------cc---chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 00 11123445555555556789999999997531100 0000000011111 0133
Q ss_pred CCcEEEEEecchhhhhhcc-CC---CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 292 SGCTIILTSRNRDLLEKDM-KS---QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v~~~~~-~~---~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
.+..||.||...+....+. .. ...+++...+.++-.++|+.+.......++. -...|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~--dl~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF--DFEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC--CHHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhCCCCC
Confidence 4567778887766552222 22 3478888889998889998777432221111 1356777777754
No 210
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00083 Score=78.11 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=102.2
Q ss_pred CccccchhHHHHHHHHHHhc-------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCC
Q 046345 155 DYEAFDSRMKVFQDVVEAAK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPD 221 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 221 (1462)
....+.|-++.++.|.+.+. -...+-|.++|++|+|||.+|+++++... .. .+.++.+.-.+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~~---f~~v~~s~l~~ 253 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--AT---FLKLAAPQLVQ 253 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CE---EEEEEGGGGCS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--CC---EEEEehhhhhh
Confidence 34566787777777766543 12356789999999999999999999883 22 33444332211
Q ss_pred HHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccc----c-----ccCCCCcccccccc--CC
Q 046345 222 HQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLEL----D-----VVGIPYGDVEKERK--DD 290 (1462)
Q Consensus 222 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~----~-----~~~~~~~~l~~~~~--~~ 290 (1462)
.. .......+..++.......+++|++|+++....- . .....+..++..+- ..
T Consensus 254 -------------~~---vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 254 -------------MY---IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp -------------SC---SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred -------------cc---cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 00 1122344555555555578999999998743100 0 00000000111110 12
Q ss_pred CCCcEEEEEecchhhhhhcc-C---CCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 291 ESGCTIILTSRNRDLLEKDM-K---SQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 291 ~~gs~IlvTtr~~~v~~~~~-~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
..+..||.||...+....+. . -...+++...+.++-.++|+.+.......++. -...|++.+.|.-
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~s 387 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEFN 387 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSCC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 34556677887766552222 1 23478999999999899998776322111111 1456778887753
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0011 Score=76.72 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=103.1
Q ss_pred ccccchhHHHHHHHHHHhc-------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...+.|-++.++.|.+.+. -...+-|.++|++|+|||++|+++++... .. .+.++.+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~---fi~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--AT---FIRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CE---EEEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CC---eEEEEhHHhhc-
Confidence 3456777777777765542 13456889999999999999999999883 22 33444332211
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---------ccCCCCcccccccc--CCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---------VVGIPYGDVEKERK--DDE 291 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~--~~~ 291 (1462)
.. .......+..++.......+++|++|+++....-. .....+..++..+- ...
T Consensus 282 ------------k~---vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 282 ------------KY---VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp ------------CS---SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred ------------cc---CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 00 11223445556665556789999999997531100 00000000000000 123
Q ss_pred CCcEEEEEecchhhhhhc-c---CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 292 SGCTIILTSRNRDLLEKD-M---KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v~~~~-~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
.+..||.||........+ . .-...+++...+.++-.++|+.++.......+. -...|++.+.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCCC
Confidence 345566677666554211 1 224588999999999999998887533222211 1356788887753
No 212
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.38 E-value=0.0062 Score=71.76 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=20.1
Q ss_pred CCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEeccccccee
Q 046345 944 YCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERI 988 (1462)
Q Consensus 944 ~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 988 (1462)
.+.+|+.+.+.+ .++.+ ....+.++.+|+.+.+.+ .++.+
T Consensus 135 ~c~~L~~i~lp~--~~~~I-~~~~F~~c~~L~~i~~~~--~~~~I 174 (394)
T 4gt6_A 135 HCEELDTVTIPE--GVTSV-ADGMFSYCYSLHTVTLPD--SVTAI 174 (394)
T ss_dssp TCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEE
T ss_pred hhcccccccccc--eeeee-cccceecccccccccccc--eeeEe
Confidence 556666666642 22222 234455566666666543 34444
No 213
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.38 E-value=6.4e-05 Score=77.93 Aligned_cols=109 Identities=12% Similarity=0.026 Sum_probs=81.1
Q ss_pred CCCcceEEEEeec-CCCCCccccccChhhhhcCCcceEEEecCCCCCC-----CCcccCCCCcCcEEEecCcccCC----
Q 046345 538 QCPRLDLFLLFTK-GDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSS-----LPSSLGRLTSLQTLCLHWCELED---- 607 (1462)
Q Consensus 538 ~~~~Lr~L~l~~~-~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~Lr~L~L~~~~l~~---- 607 (1462)
..+.|++|++.+| ..+... ...+. ..+...+.|++|+|++|.|.. +...+...++|++|+|++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g-~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPT-LKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHH-HHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHH-HHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 4677888888877 531110 11122 335667899999999999863 45566777899999999999886
Q ss_pred --ccccccccCCcEEEe--cCCCCCc-----cchhhccccccCEEccCCc
Q 046345 608 --IAIVGQLKKLEILSF--RDSDIKE-----LPLEIGLLTRLSLLDLSDC 648 (1462)
Q Consensus 608 --~~~i~~L~~L~~L~L--~~~~i~~-----lp~~i~~L~~L~~L~L~~~ 648 (1462)
...+...+.|++|+| ++|.|.. +...+...++|++|++++|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 356777889999999 8888873 4455667799999999997
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.37 E-value=0.00034 Score=73.81 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhccC----CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 046345 162 RMKVFQDVVEAAKDD----KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEF 237 (1462)
Q Consensus 162 r~~~~~~l~~~l~~~----~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 237 (1462)
+...++.+..++... ..+.+.|+|++|+|||+||+.+++..... ...++|+++. .+...+......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc--
Confidence 444566666666543 12588999999999999999999988532 3346666543 344444432211
Q ss_pred CCCcChHHHHHHHHHHHHccCcEEEEEcCCcc
Q 046345 238 GLNENTFQKAYRLCERLKKEKKVLIILDNIWT 269 (1462)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 269 (1462)
... ..+...+.+ .-+||+||++.
T Consensus 104 ---~~~----~~~~~~~~~--~~~lilDei~~ 126 (202)
T 2w58_A 104 ---QTM----NEKLDYIKK--VPVLMLDDLGA 126 (202)
T ss_dssp ---CCC----HHHHHHHHH--SSEEEEEEECC
T ss_pred ---chH----HHHHHHhcC--CCEEEEcCCCC
Confidence 111 122233322 23999999965
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0031 Score=73.32 Aligned_cols=180 Identities=16% Similarity=0.190 Sum_probs=97.5
Q ss_pred ccccchhHHHHHHHHHHhc-------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...+.|-++.++.|.+.+. -...+-|.++|++|+|||++|+++++... .+ .+.++.+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--AA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--CE---EEEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---eEEEecchhhc-
Confidence 4556677777777666543 12345689999999999999999999883 22 34444443211
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc----ccCC-----CCcccccccc--CCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD----VVGI-----PYGDVEKERK--DDE 291 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~----~~~~-----~~~~l~~~~~--~~~ 291 (1462)
.. .......+..++.......+.++++|+++....-. .-.. .+..++...- ...
T Consensus 245 ------------~~---~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 ------------KY---LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp ------------SS---CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred ------------cc---cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 00 11223445556665556789999999997431100 0000 0001111100 133
Q ss_pred CCcEEEEEecchhhhhhc-cC--C-CceEEccCC-CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 292 SGCTIILTSRNRDLLEKD-MK--S-QKNFLIEVL-SKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v~~~~-~~--~-~~~~~l~~L-~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
.+..||.||...+....+ .. . ...+++..+ +.++-..+|+.+.......++. -...|++++.|.-
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~s 379 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSLS 379 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTCC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCCC
Confidence 455677788766544212 12 2 236777655 5556666776666322211111 1356777777753
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.35 E-value=4e-05 Score=83.33 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=28.0
Q ss_pred CCCcCcEEEecCcccCCc----cccccccCCcEEEecCCCCCccchhhcccc--ccCEEccCCc
Q 046345 591 RLTSLQTLCLHWCELEDI----AIVGQLKKLEILSFRDSDIKELPLEIGLLT--RLSLLDLSDC 648 (1462)
Q Consensus 591 ~L~~Lr~L~L~~~~l~~~----~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~ 648 (1462)
++++|++|+|++|.+..+ ..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCC
Confidence 345555555555555441 2233555555555555555544 2233333 5555555554
No 217
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.33 E-value=0.0002 Score=82.55 Aligned_cols=127 Identities=16% Similarity=0.246 Sum_probs=78.1
Q ss_pred CCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCC-CCccc--CCCCcCcEEEecCc--c------cC
Q 046345 538 QCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSS-LPSSL--GRLTSLQTLCLHWC--E------LE 606 (1462)
Q Consensus 538 ~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~-lp~~i--~~L~~Lr~L~L~~~--~------l~ 606 (1462)
.+|+|+.|.+.++.. ..++. + .+.+|+.|+|..+.+.. ....+ ..+++|++|+|+.+ . +.
T Consensus 170 ~~P~L~~L~L~g~~~------l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN------LSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp TCTTCCEEEEECCBT------CBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred cCCCCcEEEEeCCCC------ceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 467888888877632 12333 2 36788888888777642 11223 36788888887532 1 11
Q ss_pred Cc-ccc--ccccCCcEEEecCCCCCc-cchhh---ccccccCEEccCCccccccc-----CccccccccccceeeccCcc
Q 046345 607 DI-AIV--GQLKKLEILSFRDSDIKE-LPLEI---GLLTRLSLLDLSDCWSLEVI-----APNVISKLSRLEELYMGGSF 674 (1462)
Q Consensus 607 ~~-~~i--~~L~~L~~L~L~~~~i~~-lp~~i---~~L~~L~~L~L~~~~~l~~~-----p~~~l~~L~~L~~L~l~~~~ 674 (1462)
.. ..+ ..+++|++|++++|.+.. .+..+ ..+++|++|+|+.| .+... +.. +.++++|+.|+++.|.
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~-L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDH-VDKIKHLKFINMKYNY 318 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTT-HHHHTTCSEEECCSBB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhh-cccCCcceEEECCCCc
Confidence 11 112 247788888888887752 22233 25788889988876 45442 222 4567888888888776
Q ss_pred c
Q 046345 675 S 675 (1462)
Q Consensus 675 ~ 675 (1462)
+
T Consensus 319 i 319 (362)
T 2ra8_A 319 L 319 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.30 E-value=0.001 Score=85.68 Aligned_cols=151 Identities=16% Similarity=0.251 Sum_probs=88.5
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCC----Ce-EEEEEecCCCCHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSF----DK-VVMAEVTQTPDHQKIQDKL 229 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f----~~-~~wv~~~~~~~~~~~~~~i 229 (1462)
....++||+++++.+...+......-+.++|++|+|||++|+.+++........ +. .+.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 345689999999999999987666678999999999999999999987322110 11 222222
Q ss_pred HHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhh----
Q 046345 230 AFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDL---- 305 (1462)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v---- 305 (1462)
+.... .........++......++.+|++|. .......+...+ .....++|.+|.....
T Consensus 245 ----g~~~~--G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l---------~~~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 245 ----GTKYR--GEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSL---------ARGELQCIGATTLDEYRKYI 307 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEECC----------CCCT---------TSSSCEEEEECCTTTTHHHH
T ss_pred ----ccccc--chHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHH---------hcCCEEEEeCCChHHHHHHh
Confidence 00000 00112334445555556788999991 111111121111 2234566766665441
Q ss_pred -h-hhccCCCceEEccCCCHHHHHHHHHHHhC
Q 046345 306 -L-EKDMKSQKNFLIEVLSKDEALQLFECIVG 335 (1462)
Q Consensus 306 -~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~ 335 (1462)
. .........+.+...+.++..+++.....
T Consensus 308 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11122345799999999999999987663
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.25 E-value=0.0029 Score=81.64 Aligned_cols=157 Identities=14% Similarity=0.214 Sum_probs=95.4
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC----CCeEEE-EEecCCCCHHHHHHHH
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS----FDKVVM-AEVTQTPDHQKIQDKL 229 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i 229 (1462)
....++||+++++.+...+......-+.|+|++|+|||++|+.+++....... ....+| ++.+.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 44568999999999999998766667899999999999999999998743211 122222 221111
Q ss_pred HHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccc--------cc---cccCCCCccccccccCCCCCcEEEE
Q 046345 230 AFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKL--------EL---DVVGIPYGDVEKERKDDESGCTIIL 298 (1462)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~~---~~~~~~~~~l~~~~~~~~~gs~Ilv 298 (1462)
.... .......+....++..+...++.+|++||+.... .. ..+...+ ...+..+|.
T Consensus 254 ---~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l---------~~~~~~~I~ 320 (758)
T 1r6b_X 254 ---LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_dssp ----CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS---------SSCCCEEEE
T ss_pred ---hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH---------hCCCeEEEE
Confidence 0000 0012334455666666655567999999997541 11 1111111 223456666
Q ss_pred Eecchhhh------hhccCCCceEEccCCCHHHHHHHHHHHh
Q 046345 299 TSRNRDLL------EKDMKSQKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 299 Ttr~~~v~------~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
+|...... .........+.+...+.++..+++....
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 66544321 0011223478999999999999887654
No 220
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.16 E-value=0.0084 Score=71.02 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=98.3
Q ss_pred cccchhHHHHHHHHHH---hccC---------CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHH
Q 046345 157 EAFDSRMKVFQDVVEA---AKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQK 224 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~---l~~~---------~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 224 (1462)
..++|.++.++.+.+. +... -.+-|.|+|++|+|||+||+.+++... .. .+.++.+.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC---eeeCCHHHHHHH--
Confidence 4567777765555544 3221 123588999999999999999999773 22 234443332110
Q ss_pred HHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccc--cC-------CCCcccccccc--CCCCC
Q 046345 225 IQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDV--VG-------IPYGDVEKERK--DDESG 293 (1462)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~--~~-------~~~~~l~~~~~--~~~~g 293 (1462)
. ..........++.......+.+|++|+++....-.. .. ..+..++..+. ....+
T Consensus 89 -----------~---~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 -----------F---VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp -----------C---TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred -----------H---hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 011223344455555456889999999965311000 00 00000110000 02245
Q ss_pred cEEEEEecchhhhhhc-cC--C-CceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 294 CTIILTSRNRDLLEKD-MK--S-QKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 294 s~IlvTtr~~~v~~~~-~~--~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
..||.||...+..... .. . ...+.+...+.++-.++++.++......++. ....|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 6777788776554211 11 2 2378899999888888888777532221111 1345888888877
No 221
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.06 E-value=0.00027 Score=69.82 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=34.4
Q ss_pred ccchhHHHHHHHHHHhcc--CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAKD--DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++|+...+.++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 467888888888877651 222357899999999999999998865
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.04 E-value=0.0014 Score=74.49 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=61.2
Q ss_pred ccchhHHHHHHHHHHhccC---------CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~---------~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 228 (1462)
.++|++..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++.+....... ..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~- 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VS- 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HH-
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HH-
Confidence 3578888888888777642 13589999999999999999999987421 12345566654333221 11
Q ss_pred HHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccc
Q 046345 229 LAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
..++.......... ...+...+.....-++++|+++..
T Consensus 94 --~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 94 --RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp --HHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGS
T ss_pred --HhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhc
Confidence 11222211000000 012233333345579999999754
No 223
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.01 E-value=0.0037 Score=74.84 Aligned_cols=184 Identities=11% Similarity=0.164 Sum_probs=101.7
Q ss_pred ccccchhHHHHHHHHHHhc-------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...++|.++.++++.+++. ....+-|.|+|++|+|||++|+.+++.. ... .+.++.+.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~~~---fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--SSE---EEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--CCC---EEEEEchH----
Confidence 3457899988888877764 1334578999999999999999998876 222 33343211
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---------ccCCCCccccccccCCCCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---------VVGIPYGDVEKERKDDESG 293 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~~~~~g 293 (1462)
+...+ ..........++.....+++.+|+|||++....-. .+...+-.+.+.. ....+
T Consensus 274 ------l~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~-~~~~~ 340 (489)
T 3hu3_A 274 ------IMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-KQRAH 340 (489)
T ss_dssp ------HHTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS-CTTSC
T ss_pred ------hhhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcc-ccCCc
Confidence 11100 01122333444444445778899999995331100 0000000000100 12234
Q ss_pred cEEEEEecchhhhhhcc----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC-chHHHH
Q 046345 294 CTIILTSRNRDLLEKDM----KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL-PVALST 363 (1462)
Q Consensus 294 s~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~ 363 (1462)
..||.||.......... .-...+.+...+.++-.+++..++.......+ ....++++.+.|. +-.+..
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHH
Confidence 56666776553321111 12247999999999999999988753221111 1235577777764 444443
No 224
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.98 E-value=0.001 Score=72.20 Aligned_cols=27 Identities=30% Similarity=0.599 Sum_probs=23.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 40 ~Ge--i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGE--IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCc--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 455 999999999999999999998764
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.94 E-value=0.0003 Score=78.15 Aligned_cols=47 Identities=26% Similarity=0.250 Sum_probs=32.4
Q ss_pred cccchhHHHHHHHHHHhc---c---------CCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 157 EAFDSRMKVFQDVVEAAK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~---~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++|.++.++.+.+.+. . ...+-+.|+|++|+|||++|+.+++...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 446676655555544432 1 1223478999999999999999999873
No 226
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.88 E-value=0.0016 Score=70.42 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=63.4
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------------
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG--------------- 238 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------------- 238 (1462)
..++ +++|+|++|+|||||++.++....... ..++|+.... ...++...+. .++....
T Consensus 21 ~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 93 (235)
T 2w0m_A 21 PQGF--FIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMK 93 (235)
T ss_dssp ETTC--EEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC-
T ss_pred cCCC--EEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEecccc
Confidence 3455 999999999999999999998775322 2466766543 3444433332 3332211
Q ss_pred --------CCcChHHHHHHHHHHHHccCc--EEEEEcCCcccc--cccccCCCCccccccccCCCCCcEEEEEecch
Q 046345 239 --------LNENTFQKAYRLCERLKKEKK--VLIILDNIWTKL--ELDVVGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 239 --------~~~~~~~~~~~l~~~l~~~k~--~LlVlDdv~~~~--~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
...+..+....+.+.+...+. .++|+|++.... +.......+..+.+.. ...|..||+||+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~--~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 94 EKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVL--NKWNFTIYATSQYA 168 (235)
T ss_dssp ---CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHH--HHTTEEEEEEEC--
T ss_pred ccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHH--HhCCCeEEEEeccC
Confidence 001223333334333332344 499999998543 2211111111111110 22478899999876
No 227
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.86 E-value=0.063 Score=62.64 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=36.8
Q ss_pred CCCCceEEEEecCCCcCccCchhhhhhcccCcEEEEecccccceecccCCCCCCcccccccccccccceeeecCCccccc
Q 046345 944 YCQNLTKLTVWKCDHLKYVFSHSMVNNLVQIQHLEIRCCESMERIVDNTGLGRDEGKLIELKVFPKLYALQLTGLTQLTS 1023 (1462)
Q Consensus 944 ~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~ 1023 (1462)
.+++|+.+.+.++ .++.+ ....+.++++|+.+.+.. .++.+... ++.++++|+++.+. .+++.
T Consensus 284 ~c~~L~~i~l~~~-~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I~~~-----------aF~~C~~L~~i~ip--~~v~~ 346 (379)
T 4h09_A 284 GCSNLTKVVMDNS-AIETL-EPRVFMDCVKLSSVTLPT--ALKTIQVY-----------AFKNCKALSTISYP--KSITL 346 (379)
T ss_dssp TCTTCCEEEECCT-TCCEE-CTTTTTTCTTCCEEECCT--TCCEECTT-----------TTTTCTTCCCCCCC--TTCCE
T ss_pred ccccccccccccc-cccee-hhhhhcCCCCCCEEEcCc--cccEEHHH-----------HhhCCCCCCEEEEC--CccCE
Confidence 5666666666543 23333 334566677777777642 35555432 56667777777664 23555
Q ss_pred ccc
Q 046345 1024 FAN 1026 (1462)
Q Consensus 1024 l~~ 1026 (1462)
+..
T Consensus 347 I~~ 349 (379)
T 4h09_A 347 IES 349 (379)
T ss_dssp ECT
T ss_pred Ech
Confidence 543
No 228
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.83 E-value=0.002 Score=68.81 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=24.1
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++....
T Consensus 33 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQ--LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCc
Confidence 455 999999999999999999998764
No 229
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.82 E-value=0.0037 Score=70.95 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=37.0
Q ss_pred ccchhHHHHHHHHHHhcc--------------CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--------------~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++|+++.++.+...+.. ...+.+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999988888877653 234578899999999999999999987
No 230
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.82 E-value=0.0013 Score=69.99 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 29 ~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGE--FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTC--EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 455 999999999999999999998653
No 231
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.79 E-value=0.00071 Score=74.23 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 33 ~Ge--~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGE--VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTS--EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHcCCC
Confidence 566 999999999999999999988653
No 232
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.79 E-value=0.0013 Score=71.67 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 49 ~Ge--i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGE--VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 455 999999999999999999998764
No 233
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.78 E-value=0.00051 Score=72.29 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=66.5
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhcc---CCC---------eEEEEEecCC----CCHH---------------
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK---SFD---------KVVMAEVTQT----PDHQ--------------- 223 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f~---------~~~wv~~~~~----~~~~--------------- 223 (1462)
.++ +++|+|++|+|||||++.++.-..+.. .++ .+.++.-... .++.
T Consensus 34 ~Ge--~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~ 111 (214)
T 1sgw_A 34 KGN--VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 111 (214)
T ss_dssp TTC--CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH
Confidence 456 999999999999999999998764211 000 1222211110 1111
Q ss_pred -HHHHHHHHHhCCCCC-C---CcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEE
Q 046345 224 -KIQDKLAFDLGMEFG-L---NENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIIL 298 (1462)
Q Consensus 224 -~~~~~i~~~l~~~~~-~---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~Ilv 298 (1462)
+-..++++.++.... . .-+.-++.........-.++-+++||++.+..|..........+.+. ...|..||+
T Consensus 112 ~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~---~~~g~tiii 188 (214)
T 1sgw_A 112 KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI---LKEKGIVII 188 (214)
T ss_dssp HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHH---HHHHSEEEE
T ss_pred HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH---HhCCCEEEE
Confidence 122334455554321 0 11222332222222223677799999999886654332211111111 113667999
Q ss_pred Eecchhhh
Q 046345 299 TSRNRDLL 306 (1462)
Q Consensus 299 Ttr~~~v~ 306 (1462)
+|++...+
T Consensus 189 vtHd~~~~ 196 (214)
T 1sgw_A 189 SSREELSY 196 (214)
T ss_dssp EESSCCTT
T ss_pred EeCCHHHH
Confidence 99987665
No 234
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.76 E-value=0.022 Score=62.62 Aligned_cols=158 Identities=13% Similarity=0.172 Sum_probs=84.2
Q ss_pred cccchhHHHHHHHHHHhc----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 157 EAFDSRMKVFQDVVEAAK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
..+.|-++..+.+.+.+. . .-.+-+.|+|++|+||||||+.+++.... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM- 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh-
Confidence 456676666666655432 1 11123899999999999999999997632 2344443221110
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---ccCCC---Ccccccccc--CCCCCcE
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---VVGIP---YGDVEKERK--DDESGCT 295 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---~~~~~---~~~l~~~~~--~~~~gs~ 295 (1462)
. .......+..+++......+.++++|+++...... ..... ...+...+- ......-
T Consensus 84 --------------~-~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 84 --------------Y-VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp --------------T-THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred --------------h-hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 0 00112233444444434578899999997531100 00000 000000000 0123445
Q ss_pred EEEEecchhhhhhcc----CCCceEEccCCCHHHHHHHHHHHhC
Q 046345 296 IILTSRNRDLLEKDM----KSQKNFLIEVLSKDEALQLFECIVG 335 (1462)
Q Consensus 296 IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~ 335 (1462)
++.+|....+..... .-...+.+...+.++-.++|+....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 666777766652221 2245788999999999999988774
No 235
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.75 E-value=0.0017 Score=71.11 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 32 ~Ge--~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGE--CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCcHHHHHHHHhCCCC
Confidence 455 999999999999999999988653
No 236
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.75 E-value=0.0022 Score=68.96 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=24.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 30 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGA--LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 455 999999999999999999998764
No 237
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.73 E-value=0.0012 Score=71.57 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=66.2
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhccC----CCeEEEEEecC----CCCH----------------------HH
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS----FDKVVMAEVTQ----TPDH----------------------QK 224 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~----~~~~----------------------~~ 224 (1462)
.++ +++|+|++|+|||||++.++.-..+... ...+.|+.=.. ..++ .+
T Consensus 30 ~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2nq2_C 30 KGD--ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107 (253)
T ss_dssp TTC--EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH
Confidence 455 9999999999999999999987643210 01122221100 0011 11
Q ss_pred HHHHHHHHhCCCCCC-----CcChHHHHH-HHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEE
Q 046345 225 IQDKLAFDLGMEFGL-----NENTFQKAY-RLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIIL 298 (1462)
Q Consensus 225 ~~~~i~~~l~~~~~~-----~~~~~~~~~-~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~Ilv 298 (1462)
...++++.++..... .-+.-++.. .+...+ -.++-+++||++.+..|..........+.+. . ...|..||+
T Consensus 108 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l-~-~~~g~tvi~ 184 (253)
T 2nq2_C 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAI-ASECKLILLDEPTSALDLANQDIVLSLLIDL-A-QSQNMTVVF 184 (253)
T ss_dssp HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH-HTTCSEEEESSSSTTSCHHHHHHHHHHHHHH-H-HTSCCEEEE
T ss_pred HHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-H-HhcCCEEEE
Confidence 223444455543211 112222222 223333 3567799999999886654332111111111 1 122678999
Q ss_pred Eecchhhh
Q 046345 299 TSRNRDLL 306 (1462)
Q Consensus 299 Ttr~~~v~ 306 (1462)
+||+...+
T Consensus 185 vtHd~~~~ 192 (253)
T 2nq2_C 185 TTHQPNQV 192 (253)
T ss_dssp EESCHHHH
T ss_pred EecCHHHH
Confidence 99987665
No 238
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.70 E-value=0.0011 Score=72.42 Aligned_cols=128 Identities=10% Similarity=0.089 Sum_probs=68.7
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHhhccC---CC--------------eEEEEEecCC----C------------
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKS---FD--------------KVVMAEVTQT----P------------ 220 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~---f~--------------~~~wv~~~~~----~------------ 220 (1462)
..++ +++|+|++|+|||||++.++.-...... |+ .+.++.-... .
T Consensus 35 ~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (266)
T 4g1u_C 35 ASGE--MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP 112 (266)
T ss_dssp ETTC--EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT
T ss_pred cCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh
Confidence 3566 9999999999999999999986533210 00 0112111000 1
Q ss_pred ----CHHHHHHHHHHHhCCCCCCC-----cChHHHHH-HHHHHHHcc------CcEEEEEcCCcccccccccCCCCcccc
Q 046345 221 ----DHQKIQDKLAFDLGMEFGLN-----ENTFQKAY-RLCERLKKE------KKVLIILDNIWTKLELDVVGIPYGDVE 284 (1462)
Q Consensus 221 ----~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~-~l~~~l~~~------k~~LlVlDdv~~~~~~~~~~~~~~~l~ 284 (1462)
...+...++++.++...... -+.-++.+ .+...+. . ++-+|++|++.+..|..........+.
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~-~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~ 191 (266)
T 4g1u_C 113 YGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA-QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191 (266)
T ss_dssp SCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH-HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh-cccccCCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 11233445566666543211 12223332 2333343 4 888999999998766543211111111
Q ss_pred ccccCCCCCcEEEEEecchhhh
Q 046345 285 KERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 285 ~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
+. . ...|..||++||+...+
T Consensus 192 ~l-~-~~~~~tvi~vtHdl~~~ 211 (266)
T 4g1u_C 192 QL-T-RQEPLAVCCVLHDLNLA 211 (266)
T ss_dssp HH-H-HHSSEEEEEECSCHHHH
T ss_pred HH-H-HcCCCEEEEEEcCHHHH
Confidence 11 0 12356799999998776
No 239
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.70 E-value=0.0014 Score=70.61 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 31 ~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQ--IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 456 999999999999999999998763
No 240
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.70 E-value=0.00093 Score=72.30 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+++|+|++|+|||||++.++.-..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3999999999999999999998763
No 241
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.68 E-value=0.0049 Score=65.78 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=52.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCC-----------CCCCcCh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGME-----------FGLNENT 243 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----------~~~~~~~ 243 (1462)
.+. +++|+|++|+||||||..++. . . -..++|++.....+..++.. +....+.. .......
T Consensus 19 ~G~--~~~i~G~~GsGKTtl~~~l~~-~-~---~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220)
T 2cvh_A 19 PGV--LTQVYGPYASGKTTLALQTGL-L-S---GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKE 90 (220)
T ss_dssp TTS--EEEEECSTTSSHHHHHHHHHH-H-H---CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSH
T ss_pred CCE--EEEEECCCCCCHHHHHHHHHH-H-c---CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHH
Confidence 445 999999999999999999998 2 1 24688888777556655443 33333221 1101111
Q ss_pred -HHHHHHHHHHHHccCcEEEEEcCCcccc
Q 046345 244 -FQKAYRLCERLKKEKKVLIILDNIWTKL 271 (1462)
Q Consensus 244 -~~~~~~l~~~l~~~k~~LlVlDdv~~~~ 271 (1462)
.+....+ ..+...+.-++|+|++....
T Consensus 91 ~~~~~~~~-~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 91 QRRVIGSL-KKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHHHH-HHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHHHH-HHHhhcCCCEEEEcCcHHHh
Confidence 1222222 23322357899999987653
No 242
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.67 E-value=0.0048 Score=67.60 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
.++ +++|+|++|+|||||++.++.-
T Consensus 45 ~Ge--~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGE--VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHHTC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCC
Confidence 456 9999999999999999999996
No 243
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.64 E-value=0.0024 Score=68.93 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=53.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCcCh--
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDK----SFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG---------LNENT-- 243 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~-- 243 (1462)
.+++|+|++|+|||||++.++....... ....++|+.-.......+ ...+....+.... .....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNH 104 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChHH
Confidence 3999999999999999999998654311 134578887665444433 2333443333211 00111
Q ss_pred -HHHHHHHHHHHH-----ccCcEEEEEcCCccc
Q 046345 244 -FQKAYRLCERLK-----KEKKVLIILDNIWTK 270 (1462)
Q Consensus 244 -~~~~~~l~~~l~-----~~k~~LlVlDdv~~~ 270 (1462)
......+...+. ..++-++|+|++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 111233333333 457789999999765
No 244
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.62 E-value=0.00074 Score=66.66 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=29.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ 218 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 218 (1462)
....++|+|++|+|||||++.+++..... .+ .+++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 33489999999999999999999988642 22 256665443
No 245
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.61 E-value=0.0017 Score=69.71 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=23.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 30 ~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGE--FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCcHHHHHHHHhcCCC
Confidence 455 999999999999999999988664
No 246
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.61 E-value=0.0015 Score=70.67 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=23.6
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 25 ~Ge--~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGE--ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCcHHHHHHHHhCCCC
Confidence 455 999999999999999999988653
No 247
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.56 E-value=0.0039 Score=78.29 Aligned_cols=159 Identities=11% Similarity=0.127 Sum_probs=89.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHc
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKK 256 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 256 (1462)
.++-|.++|++|+|||+||+++++... .+ .+.++.+. + . +.. ....+..+..+++....
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg--~~---~~~v~~~~------l----~---sk~---~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETG--AF---FFLINGPE------I----M---SKL---AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTT--CE---EEEEEHHH------H----H---SSC---TTHHHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC--Ce---EEEEEhHH------h----h---ccc---chHHHHHHHHHHHHHHH
Confidence 356789999999999999999998763 22 34444221 1 1 111 11233445566666656
Q ss_pred cCcEEEEEcCCccccccc---------ccCCCCccccccccCCCCCcEEEEEecchhhhhhccC----CCceEEccCCCH
Q 046345 257 EKKVLIILDNIWTKLELD---------VVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMK----SQKNFLIEVLSK 323 (1462)
Q Consensus 257 ~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~----~~~~~~l~~L~~ 323 (1462)
..+.+|++|+++....-. .+...+....+.+. ...+..||.||...+....... -.+.+++...+.
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~ 374 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-GGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-ccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCH
Confidence 789999999997542100 00000000000000 1234456667766554422221 234789999999
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCch
Q 046345 324 DEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPV 359 (1462)
Q Consensus 324 ~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 359 (1462)
++-.++|+.+........+ ....+|++++.|.--
T Consensus 375 ~~R~~IL~~~l~~~~~~~d--vdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 375 TGRLEILQIHTKNMKLADD--VDLEQVANETHGHVG 408 (806)
T ss_dssp HHHHHHHHHTCSSSEECTT--CCHHHHHHHCCSCCH
T ss_pred HHHHHHHHHHhcCCCCCcc--cCHHHHHHhcCCCCH
Confidence 9999999887743221111 124568888888653
No 248
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.52 E-value=0.02 Score=62.47 Aligned_cols=156 Identities=14% Similarity=0.146 Sum_probs=78.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCc
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKK 259 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 259 (1462)
-+.|+|++|+||||||+.+++... ...+.++.. .+ .... ..........+++......+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------~~----~~~~------~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DF----VEMF------VGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HH----HHSC------TTHHHHHHHHHHHHHTTSSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------HH----HHHH------hhHHHHHHHHHHHHHHhcCC
Confidence 389999999999999999998763 122333321 11 1100 00112233444454433456
Q ss_pred EEEEEcCCcccccccc---------cCCCCccccccccC--CCCCcEEEEEecchhhhhhcc----CCCceEEccCCCHH
Q 046345 260 VLIILDNIWTKLELDV---------VGIPYGDVEKERKD--DESGCTIILTSRNRDLLEKDM----KSQKNFLIEVLSKD 324 (1462)
Q Consensus 260 ~LlVlDdv~~~~~~~~---------~~~~~~~l~~~~~~--~~~gs~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ 324 (1462)
.++++||++....... .......+...+-. ......++.||.......... .-...+.+...+.+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~ 189 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHH
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHH
Confidence 8999999954211000 00000000000000 112334555666665542221 22357899999999
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 325 EALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 325 ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
+-.++++..+......++ .....+++.+.|.-
T Consensus 190 ~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 190 GREQILRIHARGKPLAED--VDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHcCCCCCcc--cCHHHHHHHcCCCC
Confidence 888888877642211111 11345667776643
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.0093 Score=64.76 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=57.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCc
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK----SFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG---------LNE 241 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~ 241 (1462)
.++ +++|+|++|+|||||++.++....... .-..++|++....+...++. .++..++.... ...
T Consensus 23 ~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 23 TGS--ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp TTS--EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCe--EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecC
Confidence 445 999999999999999999998643211 13568899887765555443 34445544320 011
Q ss_pred ChHH---HHHHHHHHHHccCcEEEEEcCCccc
Q 046345 242 NTFQ---KAYRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 242 ~~~~---~~~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
+..+ ....+.+.+...+.-++|+|++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 1122 2233444444457789999998764
No 250
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.50 E-value=0.0015 Score=74.03 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=24.4
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++ +++|+|++|+|||||++.+..-.+
T Consensus 52 ~~Ge--i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 52 PAGQ--IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CTTC--EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCCC--EEEEEcCCCchHHHHHHHHhcCCC
Confidence 3566 999999999999999999998664
No 251
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.50 E-value=0.0042 Score=67.36 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
.++ +++|+|++|+|||||++.++.-
T Consensus 28 ~Ge--~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGE--VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHHTC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCC
Confidence 456 9999999999999999999985
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.47 E-value=0.0051 Score=62.71 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++|+|++|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999874
No 253
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.47 E-value=0.0038 Score=68.04 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=24.3
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++ +++|+|++|+|||||++.++.-..
T Consensus 31 ~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 31 NKGD--VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTC--EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3566 999999999999999999988663
No 254
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.47 E-value=0.0017 Score=70.93 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=23.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 31 ~Ge--~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGD--VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 455 999999999999999999998764
No 255
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.46 E-value=0.0065 Score=65.67 Aligned_cols=27 Identities=33% Similarity=0.650 Sum_probs=24.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 34 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGE--VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 456 999999999999999999988764
No 256
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.46 E-value=0.012 Score=70.43 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=35.8
Q ss_pred cccchhHHHHHHHHHH---hccCC--ceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 157 EAFDSRMKVFQDVVEA---AKDDK--LNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~---l~~~~--~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++|.++.++.+... +..+. .+-+.++|++|+|||++|+.+++...
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 5678988887755443 33332 35788999999999999999999874
No 257
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.44 E-value=0.013 Score=71.56 Aligned_cols=45 Identities=33% Similarity=0.341 Sum_probs=33.4
Q ss_pred cchhHHHHHHHHHHhc------cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 159 FDSRMKVFQDVVEAAK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 159 ~~gr~~~~~~l~~~l~------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++|-++..+.+...+. +.....+.++|++|+||||||+.+++...
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5676666665544332 22345899999999999999999999883
No 258
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.42 E-value=0.0038 Score=69.01 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.+++-..
T Consensus 63 ~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQ--LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTC--EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCcHHHHHHHHhcCCC
Confidence 345 999999999999999999998764
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.39 E-value=0.0017 Score=69.82 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+++|+|++|+|||||++.++.-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5999999999999999999998764
No 260
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.38 E-value=0.0086 Score=74.09 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=35.5
Q ss_pred cccCCccccchh--HHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 151 IQVKDYEAFDSR--MKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 151 ~~~~~~~~~~gr--~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
....+...-++. ...++.+.-.+..++ +++|+|++|+|||||++.+.+-..+
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 334444444442 334555554455666 9999999999999999999987643
No 261
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.37 E-value=0.0052 Score=66.92 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=64.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhcc---CCC-----------eEEEEEecCCC----CHH--------------HHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDK---SFD-----------KVVMAEVTQTP----DHQ--------------KIQD 227 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f~-----------~~~wv~~~~~~----~~~--------------~~~~ 227 (1462)
+++|+|++|+|||||++.++... +.. .++ .+.| .+.+.+ ++. +...
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~ 109 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDRDLFL 109 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHHHHHH
Confidence 99999999999999999999865 321 000 1220 122211 111 1233
Q ss_pred HHHHHhCCC-CCC-----CcChHHHHH-HHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEe
Q 046345 228 KLAFDLGME-FGL-----NENTFQKAY-RLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTS 300 (1462)
Q Consensus 228 ~i~~~l~~~-~~~-----~~~~~~~~~-~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTt 300 (1462)
++++.++.. ... .-+.-++.+ .+...+ -.++-+++||++.+..|..........+.+ ... .||++|
T Consensus 110 ~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~L~~----~~~--tviivt 182 (263)
T 2pjz_A 110 EMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL-ASQPEIVGLDEPFENVDAARRHVISRYIKE----YGK--EGILVT 182 (263)
T ss_dssp HHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH-HTCCSEEEEECTTTTCCHHHHHHHHHHHHH----SCS--EEEEEE
T ss_pred HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH-HhCCCEEEEECCccccCHHHHHHHHHHHHH----hcC--cEEEEE
Confidence 455566654 211 112223322 233334 367779999999988665433221111111 112 799999
Q ss_pred cchhhh
Q 046345 301 RNRDLL 306 (1462)
Q Consensus 301 r~~~v~ 306 (1462)
|+...+
T Consensus 183 Hd~~~~ 188 (263)
T 2pjz_A 183 HELDML 188 (263)
T ss_dssp SCGGGG
T ss_pred cCHHHH
Confidence 987665
No 262
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.34 E-value=0.0034 Score=71.11 Aligned_cols=27 Identities=33% Similarity=0.446 Sum_probs=24.2
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||.+.++.-..
T Consensus 29 ~Ge--~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGE--ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTC--EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCC--EEEEECCCCchHHHHHHHHhcCCC
Confidence 456 999999999999999999999764
No 263
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.34 E-value=0.04 Score=61.07 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=79.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCc
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKK 259 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 259 (1462)
-+.|+|++|+||||||+.+++... ...+.++.. .+ .... ..........+++......+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~------~~----~~~~------~~~~~~~i~~~~~~~~~~~~ 133 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DF----VEMF------VGVGAARVRDLFETAKRHAP 133 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HH----HHST------TTHHHHHHHHHHHHHHTSCS
T ss_pred eEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH------HH----HHHH------hhHHHHHHHHHHHHHHhcCC
Confidence 389999999999999999998773 123333321 11 1100 00112233344554433467
Q ss_pred EEEEEcCCccccccc---------ccCCCCccccccccC--CCCCcEEEEEecchhhhhhc-c---CCCceEEccCCCHH
Q 046345 260 VLIILDNIWTKLELD---------VVGIPYGDVEKERKD--DESGCTIILTSRNRDLLEKD-M---KSQKNFLIEVLSKD 324 (1462)
Q Consensus 260 ~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~~--~~~gs~IlvTtr~~~v~~~~-~---~~~~~~~l~~L~~~ 324 (1462)
.++++||++...... .....+..+...+-. ......++.+|......... . .-...+.+...+.+
T Consensus 134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~ 213 (278)
T 1iy2_A 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 213 (278)
T ss_dssp EEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred cEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHH
Confidence 899999995321000 000000000000000 11223455566666554211 1 23357899999999
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 325 EALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 325 ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
+-.+++...+......++ .....+++.+.|..
T Consensus 214 ~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 214 GREQILRIHARGKPLAED--VDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHccCCCCcc--cCHHHHHHHcCCCC
Confidence 888888877643211111 12345777777754
No 264
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0042 Score=70.69 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=24.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||.+.++.-..
T Consensus 28 ~Ge--~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGE--FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCC--EEEEECCCCchHHHHHHHHhcCCC
Confidence 455 999999999999999999998764
No 265
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.30 E-value=0.0029 Score=69.25 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=28.1
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEec
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVT 217 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 217 (1462)
..++ +++|+|++|+|||||++.++...... .-..++++...
T Consensus 28 ~~G~--~~~l~GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~ 68 (251)
T 2ehv_A 28 PEGT--TVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLE 68 (251)
T ss_dssp ETTC--EEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESS
T ss_pred CCCc--EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEcc
Confidence 3555 99999999999999999999543211 11345555543
No 266
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.28 E-value=0.0088 Score=65.16 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.3
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++ +++|+|++|+|||||++.++.-.
T Consensus 45 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGT--TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 455 99999999999999999998865
No 267
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.22 E-value=0.0025 Score=72.78 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=24.2
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||.+.++.-..
T Consensus 28 ~Ge--~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGE--FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCC--EEEEEcCCCchHHHHHHHHHcCCC
Confidence 455 999999999999999999998764
No 268
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.21 E-value=0.0026 Score=72.13 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=24.6
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++ +++|+|++|+|||||.+.++.-..
T Consensus 39 ~~Ge--~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 39 REGE--MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp ETTC--EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCC--EEEEECCCCCcHHHHHHHHhCCCC
Confidence 3566 999999999999999999998764
No 269
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.19 E-value=0.0038 Score=68.54 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.++.-..
T Consensus 44 ~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGK--VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 455 999999999999999999998764
No 270
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.18 E-value=0.0054 Score=69.50 Aligned_cols=125 Identities=16% Similarity=0.115 Sum_probs=67.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEE----------------EecCCC------CHH---------
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMA----------------EVTQTP------DHQ--------- 223 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv----------------~~~~~~------~~~--------- 223 (1462)
.++ +++|+|++|+|||||.+.++.-.... .+.+++ .+.+.+ ++.
T Consensus 25 ~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~ 99 (348)
T 3d31_A 25 SGE--YFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM 99 (348)
T ss_dssp TTC--EEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred CCC--EEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 455 99999999999999999999876432 111111 111111 111
Q ss_pred ------HHHHHHHHHhCCCCCC-----CcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCC
Q 046345 224 ------KIQDKLAFDLGMEFGL-----NENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDES 292 (1462)
Q Consensus 224 ------~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~ 292 (1462)
+-..++++.++..... .-+.-++++....+..-.++-+|+||++.+..|..........+.+. . ...
T Consensus 100 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l-~-~~~ 177 (348)
T 3d31_A 100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVL-H-KKN 177 (348)
T ss_dssp HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHH-H-HHT
T ss_pred cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH-H-Hhc
Confidence 1123445555543221 12222333333333224677799999998876643321111111111 0 123
Q ss_pred CcEEEEEecchhhh
Q 046345 293 GCTIILTSRNRDLL 306 (1462)
Q Consensus 293 gs~IlvTtr~~~v~ 306 (1462)
|..||++||+...+
T Consensus 178 g~tii~vTHd~~~~ 191 (348)
T 3d31_A 178 KLTVLHITHDQTEA 191 (348)
T ss_dssp TCEEEEEESCHHHH
T ss_pred CCEEEEEeCCHHHH
Confidence 67899999997765
No 271
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.16 E-value=0.0027 Score=69.89 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=31.8
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..+...-+|....++.+.-.+..++ +++|+|++|+|||||++.++....
T Consensus 24 ~~~l~~~y~~~~vL~~isl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 24 LDQIGRMKQGKTILKKISWQIAKGD--KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEeEEEEECCEEEEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCC
Confidence 3444443443222233332233566 999999999999999999988764
No 272
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.11 E-value=0.0026 Score=64.65 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=17.7
Q ss_pred eEEEEEecCCCcHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQ 197 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~ 197 (1462)
.+++|+|++|+|||||++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4999999999999999995
No 273
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.11 E-value=0.0044 Score=70.46 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=24.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||.+.++.-..
T Consensus 28 ~Ge--~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGE--FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCC--EEEEEcCCCchHHHHHHHHHCCCC
Confidence 455 999999999999999999998764
No 274
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.09 E-value=0.0052 Score=79.06 Aligned_cols=156 Identities=15% Similarity=0.250 Sum_probs=82.5
Q ss_pred cccchhHHHHHHHHHHhcc---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQD 227 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 227 (1462)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ..-...+.++++.-.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhcccccc---
Confidence 3478999988888877762 1123689999999999999999999873 2223345566554321100
Q ss_pred HHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccc--ccccCCCCcc--cc--ccccCCCCCcEEEEEec
Q 046345 228 KLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLE--LDVVGIPYGD--VE--KERKDDESGCTIILTSR 301 (1462)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~--l~--~~~~~~~~gs~IlvTtr 301 (1462)
.. ...+...+.....-+|+||+++.... ...+...+.. +. ........+.+||+||.
T Consensus 566 -------------~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 566 -------------TS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------CC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -------------cc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 00 00111222223445899999975411 1111000000 00 00000223567888887
Q ss_pred chh-----h-------h-hhccCC-CceEEccCCCHHHHHHHHHHHh
Q 046345 302 NRD-----L-------L-EKDMKS-QKNFLIEVLSKDEALQLFECIV 334 (1462)
Q Consensus 302 ~~~-----v-------~-~~~~~~-~~~~~l~~L~~~ea~~lf~~~~ 334 (1462)
... + . ...... ...+.+.+++.++-.+++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 311 0 0 001122 2588999999998888876654
No 275
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.98 E-value=0.018 Score=64.19 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+.+.++|++|+|||+||+.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999988
No 276
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.96 E-value=0.0036 Score=71.76 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.1
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||.+.++.-..
T Consensus 28 ~Ge--~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGE--FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCC--EEEEECCCCcHHHHHHHHHHcCCC
Confidence 456 999999999999999999998764
No 277
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.96 E-value=0.003 Score=71.92 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=24.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||.+.++.-..
T Consensus 30 ~Ge--~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 30 NGE--RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TTC--EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCC--EEEEECCCCCcHHHHHHHHhCCCC
Confidence 455 999999999999999999998764
No 278
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.91 E-value=0.033 Score=60.92 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=58.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CcChHHHHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL-----NENTFQKAYRLCERL 254 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l 254 (1462)
++-|.|++|+||||||..++........-..++|++....++.. .+++++...+. ..+.++....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999998877532112468999988887764 36777765431 122223213333443
Q ss_pred ---HccCcEEEEEcCCccc
Q 046345 255 ---KKEKKVLIILDNIWTK 270 (1462)
Q Consensus 255 ---~~~k~~LlVlDdv~~~ 270 (1462)
...+.-++|+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4467889999998764
No 279
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0099 Score=72.89 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=23.5
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||.+.++....
T Consensus 102 ~Ge--i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 102 PGQ--VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TTS--EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCC--EEEEECCCCChHHHHHHHHhcCCC
Confidence 455 999999999999999999988653
No 280
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.84 E-value=0.0034 Score=71.75 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||.+.++.-..
T Consensus 36 ~Ge--~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGE--FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCC--EEEEECCCCChHHHHHHHHHcCCC
Confidence 455 999999999999999999998764
No 281
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.83 E-value=0.013 Score=67.11 Aligned_cols=93 Identities=20% Similarity=0.308 Sum_probs=55.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhh--cc-CC-CeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCc---C
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVME--DK-SF-DKVVMAEVTQTPDHQKIQDKLAFDLGMEFG---------LNE---N 242 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~--~~-~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~---~ 242 (1462)
.++.|+|++|+|||||++.++..... .. .. ..++|++....+...++ ..++...+.... ... .
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~~~ 210 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSNH 210 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCChHH
Confidence 49999999999999999999987621 11 11 24588887665544433 334444433210 000 1
Q ss_pred hHHHHHHHHHHHHc-----cCcEEEEEcCCccccc
Q 046345 243 TFQKAYRLCERLKK-----EKKVLIILDNIWTKLE 272 (1462)
Q Consensus 243 ~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~ 272 (1462)
..+....+...+.. .+.-+||+|.+....+
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 11223333333332 4788999999987643
No 282
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.76 E-value=0.0032 Score=80.36 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=67.2
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCC-----eEEEEEecCC-------CCH-----------HHHHHHHHH
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFD-----KVVMAEVTQT-------PDH-----------QKIQDKLAF 231 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-----~~~wv~~~~~-------~~~-----------~~~~~~i~~ 231 (1462)
.++ +++|+|++|+|||||++.+++-. +. .++ .+.+ +.+. .++ .+-..++++
T Consensus 460 ~Ge--~v~LiGpNGsGKSTLLk~LagG~-i~-g~~~~~~~~~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~ 533 (986)
T 2iw3_A 460 RAR--RYGICGPNGCGKSTLMRAIANGQ-VD-GFPTQEECRTVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLI 533 (986)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHHHTC-ST-TCCCTTTSCEEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCC-cC-CCccccceeEEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHH
Confidence 566 99999999999999999998521 11 111 1222 2211 111 122344566
Q ss_pred HhCCCCC------CCcChHHHHHH-HHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 232 DLGMEFG------LNENTFQKAYR-LCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 232 ~l~~~~~------~~~~~~~~~~~-l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
.++.... ..-+.-++.+. +...+ -.++-+|+||++.+..|...... +.+++.. .|..||++||+..
T Consensus 534 ~lgL~~~~~~~~~~~LSGGqkQRvaLArAL-~~~P~lLLLDEPTs~LD~~~~~~----l~~~L~~--~g~tvIivSHdl~ 606 (986)
T 2iw3_A 534 EFGFTDEMIAMPISALSGGWKMKLALARAV-LRNADILLLDEPTNHLDTVNVAW----LVNYLNT--CGITSITISHDSV 606 (986)
T ss_dssp HTTCCHHHHHSBGGGCCHHHHHHHHHHHHH-HTTCSEEEEESTTTTCCHHHHHH----HHHHHHH--SCSEEEEECSCHH
T ss_pred HcCCChhhhcCCcccCCHHHHHHHHHHHHH-hcCCCEEEEECCccCCCHHHHHH----HHHHHHh--CCCEEEEEECCHH
Confidence 6665310 01222233332 33333 36777999999999877654322 1222222 4778999999987
Q ss_pred hh
Q 046345 305 LL 306 (1462)
Q Consensus 305 v~ 306 (1462)
.+
T Consensus 607 ~l 608 (986)
T 2iw3_A 607 FL 608 (986)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 283
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.69 E-value=0.077 Score=63.24 Aligned_cols=180 Identities=14% Similarity=0.164 Sum_probs=91.1
Q ss_pred ccccchhHHHHHHHHH---HhccC---------CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 156 YEAFDSRMKVFQDVVE---AAKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~---~l~~~---------~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
...++|.++.++.+.+ .+... -.+-+.|+|++|+||||||+.+++... . ..+.++.+.-.+.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~---~~i~i~g~~~~~~- 103 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGSDFVEM- 103 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C---CEEEEEGGGGTSS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEehhHHHHh-
Confidence 3456777766555443 33321 123489999999999999999998763 1 2344443321110
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccc--cC-------CCCccccccccC--CCC
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDV--VG-------IPYGDVEKERKD--DES 292 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~--~~-------~~~~~l~~~~~~--~~~ 292 (1462)
. .......+..+++......+.++++||++....-.. .. ..+..+...+-. ...
T Consensus 104 ------------~---~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~ 168 (499)
T 2dhr_A 104 ------------F---VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 168 (499)
T ss_dssp ------------C---TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSC
T ss_pred ------------h---hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCc
Confidence 0 000111222222222113457999999964311000 00 000011110000 123
Q ss_pred CcEEEEEecchhhhhhcc----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 293 GCTIILTSRNRDLLEKDM----KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 293 gs~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
+..|+.+|.......... .-...+.++..+.++-.++++.++......+ ......|++.+.|..
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~--dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE--DVDLALLAKRTPGFV 236 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC--SSTTHHHHTTSCSCC
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHhcCCCC
Confidence 445666666665542111 1234889999999998999887764221111 112445777787765
No 284
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.68 E-value=0.015 Score=65.19 Aligned_cols=49 Identities=31% Similarity=0.320 Sum_probs=35.5
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEec
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVT 217 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 217 (1462)
++.+...+..++ +++|+|++|+|||||++.++........ ..++|++..
T Consensus 25 Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e 73 (296)
T 1cr0_A 25 INDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLE 73 (296)
T ss_dssp HHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESS
T ss_pred HHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCc
Confidence 455554455666 9999999999999999999998864321 146666654
No 285
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.68 E-value=0.021 Score=73.50 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=59.4
Q ss_pred ccchhHHHHHHHHHHhcc---------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDK 228 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~---------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 228 (1462)
.++|.++.++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++.+...+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----
Confidence 477888888888777652 1234789999999999999999999872 2345555554322100
Q ss_pred HHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccc
Q 046345 229 LAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
+.+.+|.+.. -...+....+...+.....-+|+||+++..
T Consensus 530 ~~~l~g~~~g--~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 VSRLIGAPPG--YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSSSCCCCSC--SHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred HhhhcCCCCC--CcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 0011111111 001111122334444456789999999764
No 286
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.67 E-value=0.019 Score=73.58 Aligned_cols=179 Identities=12% Similarity=0.144 Sum_probs=95.6
Q ss_pred ccccchhHHHHHHHHHHhcc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH
Q 046345 156 YEAFDSRMKVFQDVVEAAKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH 222 (1462)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 222 (1462)
...++|.++.++++.+++.. .....|.|+|++|+||||||+.+++... .. .+.++...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~---~i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AF---FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CE---EEEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--Cc---EEEEEchH----
Confidence 45577877777777666541 2345799999999999999999988752 22 23333211
Q ss_pred HHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---------ccCCCCccccccccCCCCC
Q 046345 223 QKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---------VVGIPYGDVEKERKDDESG 293 (1462)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~~~~~g 293 (1462)
+ . +.. ..........+++......+.++++|++.....-. .+...+..+.+... ...+
T Consensus 274 --l----~---~~~---~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~ 340 (806)
T 1ypw_A 274 --I----M---SKL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAH 340 (806)
T ss_dssp --H----S---SSS---TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSC
T ss_pred --h----h---hhh---hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-cccc
Confidence 1 0 100 11123344455555545678899999995431100 00000000000000 2234
Q ss_pred cEEEEEecchhhhhhcc----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCc
Q 046345 294 CTIILTSRNRDLLEKDM----KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLP 358 (1462)
Q Consensus 294 s~IlvTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 358 (1462)
..+|.||.......... .-...+.+...+.++-.+++...+.......+ ....++++.+.|.-
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~--~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHV 407 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTT--CCTHHHHHSCSSCC
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCccc--chhHHHHHhhcCcc
Confidence 56666776654331111 11246788889999999999877643221111 11234556666554
No 287
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.0089 Score=73.28 Aligned_cols=126 Identities=16% Similarity=0.067 Sum_probs=69.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCC----eEEEEEec--CCC--CH--------------HHHHHHHHHHhCCC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFD----KVVMAEVT--QTP--DH--------------QKIQDKLAFDLGME 236 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~----~~~wv~~~--~~~--~~--------------~~~~~~i~~~l~~~ 236 (1462)
.+++|+|++|+|||||++.++........-. .+.++.-. ..+ ++ .....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 4899999999999999999998765432110 12222110 001 11 12233444555543
Q ss_pred CCC-----CcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 237 FGL-----NENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 237 ~~~-----~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
... .-+.-++++.........++-+|+||++....|..........+.+.. ...|..||++||+...+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~--~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI--LHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHH--HHHTCEEEEECSCHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHHH
Confidence 211 223344444444444457788999999998876543221111111110 12367799999998776
No 288
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.64 E-value=0.007 Score=67.25 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=23.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.+.+-..
T Consensus 79 ~Ge--~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQ--TLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTC--EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCchHHHHHHHHHcCCC
Confidence 455 999999999999999999988663
No 289
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.62 E-value=0.0052 Score=74.73 Aligned_cols=128 Identities=18% Similarity=0.245 Sum_probs=70.1
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc-C-----------CC----------------eEEEEE--ecCC---
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK-S-----------FD----------------KVVMAE--VTQT--- 219 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-~-----------f~----------------~~~wv~--~~~~--- 219 (1462)
+..++ +++|+|++|+|||||++.++....+.. . ++ .+.++. +...
T Consensus 44 i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 121 (538)
T 1yqt_A 44 VKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKA 121 (538)
T ss_dssp CCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGG
T ss_pred CCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchh
Confidence 34566 999999999999999999998653211 1 10 011110 0000
Q ss_pred --CCHHH---------HHHHHHHHhCCCCCCC-----cChHHHHH-HHHHHHHccCcEEEEEcCCcccccccccCCCCcc
Q 046345 220 --PDHQK---------IQDKLAFDLGMEFGLN-----ENTFQKAY-RLCERLKKEKKVLIILDNIWTKLELDVVGIPYGD 282 (1462)
Q Consensus 220 --~~~~~---------~~~~i~~~l~~~~~~~-----~~~~~~~~-~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~ 282 (1462)
.++.+ -..+++..++...... -+.-++.. .+...+ -.++-+||||++.+..|.......+..
T Consensus 122 ~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL-~~~P~lLlLDEPTs~LD~~~~~~l~~~ 200 (538)
T 1yqt_A 122 VKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAAL-LRNATFYFFDEPSSYLDIRQRLNAARA 200 (538)
T ss_dssp CCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHH-HSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred hhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 01211 1245566666643211 12233333 233334 467889999999988765533221122
Q ss_pred ccccccCCCCCcEEEEEecchhhh
Q 046345 283 VEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 283 l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
+.++ . ..|..||++||+...+
T Consensus 201 L~~l-~--~~g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 201 IRRL-S--EEGKSVLVVEHDLAVL 221 (538)
T ss_dssp HHHH-H--HTTCEEEEECSCHHHH
T ss_pred HHHH-H--hcCCEEEEEeCCHHHH
Confidence 2121 1 1377899999998776
No 290
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.62 E-value=0.0081 Score=73.83 Aligned_cols=125 Identities=16% Similarity=0.131 Sum_probs=68.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhcc-C--CC-eEEEEEecC----CCCHHHHH--------------HHHHHHhCCCC
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDK-S--FD-KVVMAEVTQ----TPDHQKIQ--------------DKLAFDLGMEF 237 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~-~--f~-~~~wv~~~~----~~~~~~~~--------------~~i~~~l~~~~ 237 (1462)
+++|+|++|+|||||++.++....... . +. .+.++.=.. ..++.+.+ .++++.++...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~ 463 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID 463 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCch
Confidence 999999999999999999999764321 1 11 133332111 11222221 23344455532
Q ss_pred CC-----CcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 238 GL-----NENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 238 ~~-----~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.. .-+.-++...........++-+|+||++.+..|..........+.++ . ...|..||++||+...+
T Consensus 464 ~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l-~-~~~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 464 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL-M-EKNEKTALVVEHDVLMI 535 (607)
T ss_dssp TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHH-H-HHTTCEEEEECSCHHHH
T ss_pred HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHH-H-HhCCCEEEEEeCCHHHH
Confidence 21 12223343333333334677899999999887755432211111111 0 12466799999998776
No 291
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.57 E-value=0.0067 Score=69.84 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=24.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+..++ +++|+|++|+|||||.+.++.-.
T Consensus 44 i~~Ge--~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQ--RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTC--EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCC--EEEEECCCCChHHHHHHHHhCCC
Confidence 33566 99999999999999999999754
No 292
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.56 E-value=0.056 Score=70.21 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=37.4
Q ss_pred ccchhHHHHHHHHHHhccC---------CceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 158 AFDSRMKVFQDVVEAAKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~---------~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++|++..++.+...+... ....+.|+|++|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999888887776521 225789999999999999999999874
No 293
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.51 E-value=0.21 Score=58.14 Aligned_cols=90 Identities=24% Similarity=0.197 Sum_probs=49.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCCC---CcChHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-PDHQKIQDKLAFDLGMEFGL---NENTFQKAYRLCE 252 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 252 (1462)
..++|+++|++|+||||++..++......+ ..+..+..... ....+-+.......+.+... ..+..........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 456999999999999999999999886432 23444554321 12223334444544543221 1122222333333
Q ss_pred HHHccCcEEEEEcCCc
Q 046345 253 RLKKEKKVLIILDNIW 268 (1462)
Q Consensus 253 ~l~~~k~~LlVlDdv~ 268 (1462)
.+.....=++|+|-+.
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 3322233466778764
No 294
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.49 E-value=0.037 Score=64.06 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=56.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCcCh---
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDK----SFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG---------LNENT--- 243 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~--- 243 (1462)
++.|+|++|+|||||+..++-...... .-..++|++....+...++ ..+++.++.... .....
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~~ 258 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADHQ 258 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHHH
Confidence 999999999999999998765442111 2346889988776665544 346666664321 01111
Q ss_pred HHHHHHHHHHHHccCcEEEEEcCCccc
Q 046345 244 FQKAYRLCERLKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 244 ~~~~~~l~~~l~~~k~~LlVlDdv~~~ 270 (1462)
.+....+...+...+.-++|+|.+...
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhh
Confidence 122333444444467789999998654
No 295
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.49 E-value=0.046 Score=61.92 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=55.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CcChHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL-----NENTFQKAYRLCER 253 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~ 253 (1462)
.++.|+|++|+||||||..++....... ..++|++....++.. .+++++..... .....+....+...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 4999999999999999999998875322 347888887776654 45556554321 12233333333333
Q ss_pred HHccCcEEEEEcCCccc
Q 046345 254 LKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 254 l~~~k~~LlVlDdv~~~ 270 (1462)
+...+.-++|+|.+...
T Consensus 135 ~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHTSCCSEEEEECTTTC
T ss_pred hhhcCCCeEEehHhhhh
Confidence 33355669999998654
No 296
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.47 E-value=0.0062 Score=74.05 Aligned_cols=125 Identities=17% Similarity=0.134 Sum_probs=67.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhcc-C--CC-eEEEEEecC----CCCHHHHHHH--------------HHHHhCCCC
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDK-S--FD-KVVMAEVTQ----TPDHQKIQDK--------------LAFDLGMEF 237 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~-~--f~-~~~wv~~~~----~~~~~~~~~~--------------i~~~l~~~~ 237 (1462)
+++|+|++|+|||||++.++....... . +. .+.++.=.. ..++.+.... ++..++...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 393 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIID 393 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh
Confidence 999999999999999999999764321 1 11 133332111 1133332221 112223221
Q ss_pred CC-----CcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 238 GL-----NENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 238 ~~-----~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.. .-+.-++...........++-+||||++.+..|..........+.+. . ...|..||++|++...+
T Consensus 394 ~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l-~-~~~g~tvi~vsHd~~~~ 465 (538)
T 1yqt_A 394 LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL-M-EKNEKTALVVEHDVLMI 465 (538)
T ss_dssp GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHH-H-HHHTCEEEEECSCHHHH
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-H-HhCCCEEEEEeCCHHHH
Confidence 10 11223444433333335778899999999987765432211111111 0 12366799999998776
No 297
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.47 E-value=0.41 Score=55.65 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=25.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
+..+|.++|.+|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999988864
No 298
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.41 E-value=0.06 Score=60.95 Aligned_cols=90 Identities=26% Similarity=0.292 Sum_probs=57.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccC----CCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCcChH-
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKS----FDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG---------LNENTF- 244 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~- 244 (1462)
.++.|+|++|+||||||..++........ -..++|++....++..++. +++..++.... ......
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 39999999999999999999987532110 2468999988877776655 34555654321 011111
Q ss_pred --HHHHHHHHHHHc-cCcEEEEEcCCcc
Q 046345 245 --QKAYRLCERLKK-EKKVLIILDNIWT 269 (1462)
Q Consensus 245 --~~~~~l~~~l~~-~k~~LlVlDdv~~ 269 (1462)
+....+...+.. .+.-++|+|.+..
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 223333444433 5667888898754
No 299
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.39 E-value=0.04 Score=62.72 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=54.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC----CcChHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL----NENTFQKAYRLCERL 254 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~~l 254 (1462)
.++.|+|++|+||||||..++...... -..++|++....++.. .++.++..... .....+....+...+
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 399999999999999999999877432 2358899988776653 35556544221 111222222333333
Q ss_pred -HccCcEEEEEcCCccc
Q 046345 255 -KKEKKVLIILDNIWTK 270 (1462)
Q Consensus 255 -~~~k~~LlVlDdv~~~ 270 (1462)
...+.-++|+|.+...
T Consensus 135 ~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HTTTCCSEEEEECGGGC
T ss_pred HhcCCCCEEEEcChHhh
Confidence 2345679999998764
No 300
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.38 E-value=0.012 Score=64.79 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=43.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEe--cCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHc
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEV--TQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKK 256 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 256 (1462)
+++.|+|++|+||||||.+++... . ..++|+++ .+..+ .. .....+....+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~--G---~~VlyIs~~~eE~v~-------------~~---~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL--G---GKDKYATVRFGEPLS-------------GY---NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH--H---TTSCCEEEEBSCSST-------------TC---BCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC--C---CCEEEEEecchhhhh-------------hh---hcCHHHHHHHHHHHHhh
Confidence 477899999999999999999861 1 12456666 22211 00 02233444455555643
Q ss_pred cCcEEEEEcCCcc
Q 046345 257 EKKVLIILDNIWT 269 (1462)
Q Consensus 257 ~k~~LlVlDdv~~ 269 (1462)
.+ ++|+|++..
T Consensus 183 -~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 -HR-VIVIDSLKN 193 (331)
T ss_dssp -CS-EEEEECCTT
T ss_pred -CC-EEEEecccc
Confidence 44 999999865
No 301
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.38 E-value=0.0096 Score=59.10 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 161 SRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
|....++.+.-.+..++ +++|+|++|+|||||++.++...
T Consensus 18 g~~~~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC
Confidence 44444444443334555 99999999999999999999987
No 302
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.36 E-value=0.071 Score=60.79 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=55.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------C---CcC
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDK----SFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG---------L---NEN 242 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~---~~~ 242 (1462)
.++.|+|++|+||||||..++....... .-..++|++....++..++. +++..++.... . ...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e~ 201 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSEH 201 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHHH
Confidence 4999999999999999999998753211 22468999998877776654 34455554321 0 011
Q ss_pred hHHHHHHHHHHHHc--cCcEEEEEcCCcc
Q 046345 243 TFQKAYRLCERLKK--EKKVLIILDNIWT 269 (1462)
Q Consensus 243 ~~~~~~~l~~~l~~--~k~~LlVlDdv~~ 269 (1462)
..+....+...+.. .+.-+||+|.+..
T Consensus 202 ~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 202 QMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 11222233333433 4566888888754
No 303
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.36 E-value=0.0069 Score=73.37 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=64.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccC---CC--eEEEEEecC----CCCHHHHHH---------------HHHHHhCC
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKS---FD--KVVMAEVTQ----TPDHQKIQD---------------KLAFDLGM 235 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~---f~--~~~wv~~~~----~~~~~~~~~---------------~i~~~l~~ 235 (1462)
+++|+|++|+|||||++.++....+... ++ .+.++.-.. ..++.+.+. ++++.++.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l 375 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL 375 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC
Confidence 9999999999999999999987643211 11 122221110 112222221 11222222
Q ss_pred CCCC-----CcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 236 EFGL-----NENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 236 ~~~~-----~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
.... .-+.-++++.........++-+||||++.+..|..........+.+. . ...|..||++|++...+
T Consensus 376 ~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l-~-~~~g~tvi~vsHdl~~~ 449 (538)
T 3ozx_A 376 HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV-T-RERKAVTFIIDHDLSIH 449 (538)
T ss_dssp GGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH-H-HHTTCEEEEECSCHHHH
T ss_pred HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-H-HhCCCEEEEEeCCHHHH
Confidence 1110 11223333333333334678899999999887654322111111111 0 12467799999998776
No 304
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.34 E-value=0.0061 Score=75.45 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.+.+-..
T Consensus 368 ~G~--~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGK--TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTC--EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhhccC
Confidence 455 999999999999999999998764
No 305
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.31 E-value=0.7 Score=51.79 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=38.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC-CCCHHHHHHHHHHHhCC
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ-TPDHQKIQDKLAFDLGM 235 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 235 (1462)
.+..+++|+|++|+||||+++.++........ .+.++...- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g--~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF--SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC--EEEEEeecccccchHHHHHHHHHHcCc
Confidence 45569999999999999999999998864322 344444332 22333444555666654
No 306
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.27 E-value=0.91 Score=53.05 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=52.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCCC---CcChHHHHHHHH
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-PDHQKIQDKLAFDLGMEFGL---NENTFQKAYRLC 251 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 251 (1462)
...++|+++|.+|+||||++..++.....+.. ..+..++.... ......+.......+...-. ..+..+......
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 34679999999999999999999998864312 34566665432 23333333344444443221 122333334445
Q ss_pred HHHHccCcEEEEEcCCc
Q 046345 252 ERLKKEKKVLIILDNIW 268 (1462)
Q Consensus 252 ~~l~~~k~~LlVlDdv~ 268 (1462)
..+....-=++|+|-+-
T Consensus 177 ~~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHHTTCSEEEEECCC
T ss_pred HHHHhCCCCEEEEECCC
Confidence 55532222367778763
No 307
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.27 E-value=0.015 Score=70.40 Aligned_cols=24 Identities=50% Similarity=0.840 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+++|+|++|+|||||++.++...
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 499999999999999999998854
No 308
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.25 E-value=0.029 Score=62.89 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHhccC---CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEe
Q 046345 161 SRMKVFQDVVEAAKDD---KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEV 216 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~~---~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~ 216 (1462)
++...++.+..++... ....+.|+|+.|+|||+||..+++....... ..++++++
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g-~~v~~~~~ 189 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG-VSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC-CCEEEEEH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEH
Confidence 4555666666666642 2358899999999999999999998751222 23555554
No 309
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.19 E-value=0.0096 Score=73.18 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=69.0
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhcc-C-----------CCe----------------EEEEE--ecC----
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK-S-----------FDK----------------VVMAE--VTQ---- 218 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-~-----------f~~----------------~~wv~--~~~---- 218 (1462)
+..++ +++|+|++|+|||||++.++....+.. . |+. +..+. +..
T Consensus 114 i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 191 (607)
T 3bk7_A 114 VKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKA 191 (607)
T ss_dssp CCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGT
T ss_pred CCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhh
Confidence 34556 999999999999999999987653211 0 100 01100 000
Q ss_pred -CCCHHH---------HHHHHHHHhCCCCCC-----CcChHHHHHH-HHHHHHccCcEEEEEcCCcccccccccCCCCcc
Q 046345 219 -TPDHQK---------IQDKLAFDLGMEFGL-----NENTFQKAYR-LCERLKKEKKVLIILDNIWTKLELDVVGIPYGD 282 (1462)
Q Consensus 219 -~~~~~~---------~~~~i~~~l~~~~~~-----~~~~~~~~~~-l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~ 282 (1462)
..++.+ ...++++.++..... .-+.-++... +...+ -.++-+|+||++.+..|..........
T Consensus 192 ~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL-~~~P~lLlLDEPTs~LD~~~~~~l~~~ 270 (607)
T 3bk7_A 192 VKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAAL-LRKAHFYFFDEPSSYLDIRQRLKVARV 270 (607)
T ss_dssp CCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHH-HSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred ccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 001111 123455666654321 1122333332 33334 367789999999988775432221111
Q ss_pred ccccccCCCCCcEEEEEecchhhh
Q 046345 283 VEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 283 l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
+.++ . ..|..||++||+...+
T Consensus 271 L~~l-~--~~g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 271 IRRL-A--NEGKAVLVVEHDLAVL 291 (607)
T ss_dssp HHHH-H--HTTCEEEEECSCHHHH
T ss_pred HHHH-H--hcCCEEEEEecChHHH
Confidence 1111 1 1377899999998776
No 310
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.19 E-value=0.026 Score=64.25 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=58.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH--HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHc
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ--KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKK 256 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 256 (1462)
.+++|+|++|+||||+++.+.+....... ..++ .+.+..... .. ..+..+... ..........+...+ .
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~-~~i~--t~ed~~e~~~~~~-~~~v~q~~~----~~~~~~~~~~La~aL-~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKY-HHIL--TIEDPIEFVHESK-KCLVNQREV----HRDTLGFSEALRSAL-R 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCC-CEEE--EEESSCCSCCCCS-SSEEEEEEB----TTTBSCHHHHHHHHT-T
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCC-cEEE--EccCcHHhhhhcc-ccceeeeee----ccccCCHHHHHHHHh-h
Confidence 49999999999999999999988753211 1222 222221100 00 000000000 000111222344444 4
Q ss_pred cCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhh
Q 046345 257 EKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLL 306 (1462)
Q Consensus 257 ~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~ 306 (1462)
..+=+|++|++.+.+.++.+... ...|..|++|++....+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~----------~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTA----------AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHH----------HHTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHH----------HhcCCEEEEEEccChHH
Confidence 67778999999876554432111 22467799999987654
No 311
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.11 E-value=0.049 Score=60.96 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ 218 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 218 (1462)
.+..+|+|+|++|+|||||++.+.........-..+.++.-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 3445999999999999999999999885421112355555443
No 312
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.06 E-value=0.045 Score=63.90 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=88.4
Q ss_pred CCCcceEEEEeecCCCCCccccccChhhhhcCCcceEEEecCCCCCCCCc-ccCCCCcCcEEEecCcccCC--ccccccc
Q 046345 538 QCPRLDLFLLFTKGDGSFPISMQMSDLFFEGTEGLKVLDFTGIHFSSLPS-SLGRLTSLQTLCLHWCELED--IAIVGQL 614 (1462)
Q Consensus 538 ~~~~Lr~L~l~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L 614 (1462)
.+.+++.+.+..+ ...+....|..+..|+.+.+..+ ++.+.+ .+.++.+|+.+.+..+ +.. ...|.++
T Consensus 215 ~~~~l~~i~~~~~-------~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 215 YGKNLKKITITSG-------VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp TCSSCSEEECCTT-------CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred cccccceeeeccc-------eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 4566666665432 45566667788888888888765 566643 5777888888888654 443 3567788
Q ss_pred cCCcEEEecCCCCCccch-hhccccccCEEccCCcccccccCccccccccccceeeccC
Q 046345 615 KKLEILSFRDSDIKELPL-EIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGG 672 (1462)
Q Consensus 615 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 672 (1462)
.+|+.+.+.++.++.++. .+.++.+|+.+.+.. .++.++...|.++++|+.+.+..
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 888888888877877764 466788888888876 47777777788888888887744
No 313
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.00 E-value=0.075 Score=60.72 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=54.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCcChHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG-----LNENTFQKAYRLCER 253 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 253 (1462)
.++.|.|.+|+||||||..++...... -..++|++....++.. .+..++.... ......+.. ...+.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l-~~l~~ 146 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQAL-EIMEL 146 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH-HHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHH-HHHHH
Confidence 389999999999999999998877432 2368999998776654 2455554322 112223333 33333
Q ss_pred HH-ccCcEEEEEcCCccc
Q 046345 254 LK-KEKKVLIILDNIWTK 270 (1462)
Q Consensus 254 l~-~~k~~LlVlDdv~~~ 270 (1462)
+. ..+.-+||+|.+...
T Consensus 147 l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHTTTCCSEEEEECTTTC
T ss_pred HHhcCCCCEEEEeChHHh
Confidence 32 345569999998643
No 314
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.98 E-value=0.015 Score=71.69 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=23.6
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.+.+...
T Consensus 368 ~Ge--~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGS--LVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTC--EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCcc
Confidence 455 999999999999999999988663
No 315
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.93 E-value=0.07 Score=59.17 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=48.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHc
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ-TPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKK 256 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 256 (1462)
..+++++|++|+||||++..++.....+.. ..+..+.... .....+.+....+..+.+....... .........+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~-~~l~~al~~~-- 180 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTK-EEFQQAKELF-- 180 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSH-HHHHHHHHHG--
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCH-HHHHHHHHHh--
Confidence 459999999999999999999998864222 2355555432 2233333444444444433211222 2222233333
Q ss_pred cCcEEEEEcCC
Q 046345 257 EKKVLIILDNI 267 (1462)
Q Consensus 257 ~k~~LlVlDdv 267 (1462)
.+.-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 33458889943
No 316
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.91 E-value=0.064 Score=60.79 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=55.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhcc---------CC-----CeEEEEEecCCCCHHHHHHHHHHHhCCCCC------
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDK---------SF-----DKVVMAEVTQTPDHQKIQDKLAFDLGMEFG------ 238 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------ 238 (1462)
.++.|+|.+|+||||+|..++....... .. ..++|++....++..++.. ++..++....
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNT 177 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCE
Confidence 4999999999999999999998642111 11 4689999888877776654 4455554321
Q ss_pred ---CCcChH---HHHHHHHHHHHc-cCcEEEEEcCCcc
Q 046345 239 ---LNENTF---QKAYRLCERLKK-EKKVLIILDNIWT 269 (1462)
Q Consensus 239 ---~~~~~~---~~~~~l~~~l~~-~k~~LlVlDdv~~ 269 (1462)
...... +....+...+.. .+.-++|+|.+..
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 011111 122233333433 4456888888754
No 317
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.89 E-value=0.025 Score=59.52 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcc--CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEec
Q 046345 163 MKVFQDVVEAAKD--DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVT 217 (1462)
Q Consensus 163 ~~~~~~l~~~l~~--~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 217 (1462)
++.+++|.+.+.. .+..+|+|+|++|+|||||++.+.......+ ....++...
T Consensus 5 ~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d 59 (208)
T 3c8u_A 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMD 59 (208)
T ss_dssp HHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESG
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC--CceEEEecC
Confidence 3456666666653 3556999999999999999999999886421 124555544
No 318
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.88 E-value=0.029 Score=58.58 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhcc---CCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 161 SRMKVFQDVVEAAKD---DKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~---~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.|++.++.+.+.+.+ ....+|+|+|++|+||||+++.+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356677778777764 3456999999999999999999998774
No 319
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.82 E-value=0.069 Score=57.85 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=30.5
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ 218 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 218 (1462)
.++ ++.|.|++|+||||||..++...... -..++|++...
T Consensus 22 ~G~--~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERN--VVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TTC--EEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CCc--EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 445 99999999999999999888776432 23577877654
No 320
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.80 E-value=0.017 Score=73.82 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++ +++|+|++|+|||||++.+++..
T Consensus 698 ~Ge--ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 698 LSS--RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp TTC--EEEECSCCCHHHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 456 99999999999999999998654
No 321
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.72 E-value=0.028 Score=63.63 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=62.4
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTF 244 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 244 (1462)
.++.+...+..++ .++|+|++|+|||||++.+....... .+.+.+.-......... -..++.-.. ...
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~----~~~i~~~~g---gg~ 227 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHH----KNYTQLFFG---GNI 227 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSC----SSEEEEECB---TTB
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccc----hhEEEEEeC---CCh
Confidence 4555555566677 89999999999999999999876432 34454442221110000 000000000 011
Q ss_pred HHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhh
Q 046345 245 QKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDL 305 (1462)
Q Consensus 245 ~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v 305 (1462)
.....+...+ ..++-++++|++...+.++.+. . . ...+..+|+|||....
T Consensus 228 ~~r~~la~aL-~~~p~ilildE~~~~e~~~~l~----~----~--~~g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 228 TSADCLKSCL-RMRPDRIILGELRSSEAYDFYN----V----L--CSGHKGTLTTLHAGSS 277 (330)
T ss_dssp CHHHHHHHHT-TSCCSEEEECCCCSTHHHHHHH----H----H--HTTCCCEEEEEECSSH
T ss_pred hHHHHHHHHh-hhCCCEEEEcCCChHHHHHHHH----H----H--hcCCCEEEEEEcccHH
Confidence 1222333344 3567789999998744333221 1 0 1122247888887653
No 322
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.71 E-value=0.023 Score=71.57 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=32.9
Q ss_pred cEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceEEc
Q 046345 259 KVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNFLI 318 (1462)
Q Consensus 259 ~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~~l 318 (1462)
+-+|+||++.+..|..........+.+. ...|..||++||+..++. . +.+++.+
T Consensus 223 ~~lLlLDEPtsgLD~~~~~~l~~~l~~l---~~~g~tvi~vtHd~~~~~--~-~d~ii~l 276 (670)
T 3ux8_A 223 GVLYVLDEPSIGLHQRDNDRLIATLKSM---RDLGNTLIVVEHDEDTML--A-ADYLIDI 276 (670)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHH---HHTTCEEEEECCCHHHHH--H-CSEEEEE
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHh--h-CCEEEEe
Confidence 3499999999887654432222111111 124778999999988752 2 4556555
No 323
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.70 E-value=0.098 Score=59.54 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=54.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC----CcChHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL----NENTFQKAYRLCERL 254 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~~l 254 (1462)
.++.|.|.+|+||||||..++....... ..++|++....++... +..++..... .....+....+...+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 3999999999999999999998875322 3689999987776442 4555543221 111222233333333
Q ss_pred -HccCcEEEEEcCCccc
Q 046345 255 -KKEKKVLIILDNIWTK 270 (1462)
Q Consensus 255 -~~~k~~LlVlDdv~~~ 270 (1462)
...+.-++|+|.+...
T Consensus 137 ~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 137 ARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHTCCSEEEEECGGGC
T ss_pred HhccCCCEEEEcCHHHh
Confidence 2345569999998653
No 324
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.53 E-value=0.0083 Score=74.37 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.+.+-..
T Consensus 380 ~G~--~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQ--KVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTC--EEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCcHHHHHHHHhcCcC
Confidence 455 999999999999999999988664
No 325
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.51 E-value=0.025 Score=71.21 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+++|+|++|+||||+.+.++.-.
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 499999999999999999999865
No 326
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.41 E-value=0.15 Score=57.43 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFD 232 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 232 (1462)
.++++..-+..+. ++.|.|.+|+||||+|..++......+ ..++|++.. .+..++...+...
T Consensus 57 ~LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3455543344555 999999999999999999998875433 568888766 4566666666543
No 327
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.38 E-value=0.19 Score=57.51 Aligned_cols=161 Identities=7% Similarity=-0.040 Sum_probs=96.4
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHH
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCE 252 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 252 (1462)
+...-.+++.++|+.|.||++.|..+...... ..|+....+.+....+..++...+. ..
T Consensus 13 l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~--------------------~~ 71 (343)
T 1jr3_D 13 LNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA-QGFEEHHTFSIDPNTDWNAIFSLCQ--------------------AM 71 (343)
T ss_dssp HHHCCCSEEEEEESCHHHHHHHHHHHHHHHHH-HTCCEEEEEECCTTCCHHHHHHHHH--------------------HH
T ss_pred HhcCCCcEEEEECCcHHHHHHHHHHHHHHHHh-CCCCeeEEEEecCCCCHHHHHHHhc--------------------Cc
Confidence 33344569999999999999999999997753 2343322223333333333222211 01
Q ss_pred HHHccCcEEEEEcCCcc-c--ccccccCCCCccccccccCCCCCcEEEEEecc-------hhhhhhccCCCceEEccCCC
Q 046345 253 RLKKEKKVLIILDNIWT-K--LELDVVGIPYGDVEKERKDDESGCTIILTSRN-------RDLLEKDMKSQKNFLIEVLS 322 (1462)
Q Consensus 253 ~l~~~k~~LlVlDdv~~-~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~-------~~v~~~~~~~~~~~~l~~L~ 322 (1462)
-+ -+++-++|+|++.. . ..++.+ .+++....+++.+|+++.. ..+..........++..+++
T Consensus 72 pl-f~~~kvvii~~~~~kl~~~~~~aL-------l~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 72 SL-FASRQTLLLLLPENGPNAAINEQL-------LTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp HH-CCSCEEEEEECCSSCCCTTHHHHH-------HHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred CC-ccCCeEEEEECCCCCCChHHHHHH-------HHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 12 36788999999865 2 223322 2222224457777776643 12332233455689999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCCchHHHH
Q 046345 323 KDEALQLFECIVGDSAKTSAIQPIADEIVERCEGLPVALST 363 (1462)
Q Consensus 323 ~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 363 (1462)
.++....+.+.+.... -.-..+.+..+++.++|.+.++..
T Consensus 144 ~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLN-LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTHHHHHHHHHHHHTT-CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhchHHHHHHH
Confidence 9999888887763211 112356788899999998877654
No 328
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.33 E-value=0.018 Score=71.16 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.6
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.+.+...
T Consensus 366 ~G~--~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGE--TVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTC--EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCC--EEEEECCCCChHHHHHHHHhcCCC
Confidence 455 999999999999999999988664
No 329
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.26 E-value=0.2 Score=55.23 Aligned_cols=56 Identities=21% Similarity=0.071 Sum_probs=36.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhcc-CCCeEEEEEecCCCCHHHHHHHHHH
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK-SFDKVVMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 231 (1462)
+...+|+|+|+.|+||||||+.+........ ....+..|+...-.-.......+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~ 85 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNE 85 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhc
Confidence 4567999999999999999999999885421 1223444455543333344445543
No 330
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.25 E-value=0.076 Score=59.59 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=49.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhcc-CCCeEEEEEecCCCC-HHHHHHHHHHHhCCC---CCCCcChHHHHH-----
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDK-SFDKVVMAEVTQTPD-HQKIQDKLAFDLGME---FGLNENTFQKAY----- 248 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~---~~~~~~~~~~~~----- 248 (1462)
..++|+|++|+|||||++.+++....+. .++ ++++-+++... +.+ +.+.+... ...++....+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~----~~~~~~~~vV~atadep~~~r~~~a~~a 249 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTE----MQRLVKGEVVASTFDEPASRHVQVAEMV 249 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHH----HHTTCSSEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHH----HHHHhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4999999999999999999988764322 233 44566666532 222 22222100 001122222111
Q ss_pred -HHHHHH-HccCcEEEEEcCCccc
Q 046345 249 -RLCERL-KKEKKVLIILDNIWTK 270 (1462)
Q Consensus 249 -~l~~~l-~~~k~~LlVlDdv~~~ 270 (1462)
.+.+++ .+++.+|+++||+...
T Consensus 250 lt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 250 IEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCchHH
Confidence 122233 2489999999999764
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.22 E-value=0.023 Score=61.51 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 161 SRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
|+...++.+.-.+..+. +|+|.|++|+|||||++.+....
T Consensus 10 ~~~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCSE--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHh
Confidence 44455666665555554 99999999999999999999875
No 332
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.04 E-value=0.15 Score=56.85 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=39.7
Q ss_pred ccchhHHHHHHHHHHhcc----CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC
Q 046345 158 AFDSRMKVFQDVVEAAKD----DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ 218 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~----~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 218 (1462)
.++|....+..+...+.. +...+|+|.|++|+||||+|+.+.........-..+..+....
T Consensus 68 ~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 68 FYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred HhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 345666666666555543 3456999999999999999999988874211112355555544
No 333
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.00 E-value=0.028 Score=58.68 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 160 DSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
+|....++.+ ..++ +++|+|++|+|||||++.++.. .+
T Consensus 10 ~g~~~~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 10 LGQKHYVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp HHHHHHHHHH----HHCS--EEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred HhHHHHHHhc----cCCC--EEEEECCCCCCHHHHHHHHhcC-CC
Confidence 3555555554 5677 9999999999999999999988 54
No 334
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.99 E-value=0.019 Score=68.02 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+++|+|++|+|||||.+.++.-.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999996554
No 335
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.96 E-value=0.017 Score=70.42 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=70.3
Q ss_pred HHHHHHHHH-HhccCCceEEEEEecCCCcHHHHHHHH--HHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCC--
Q 046345 163 MKVFQDVVE-AAKDDKLNIIGVYGMGGVGKTTLVKQV--AKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEF-- 237 (1462)
Q Consensus 163 ~~~~~~l~~-~l~~~~~~vv~I~G~~GvGKTtLa~~~--~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-- 237 (1462)
...++.+.. .+..++ +++|+|++|+|||||++.+ ..-.... ...++++... ..... ...+..++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~--~~~~~-~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEE--TPQDI-IKNARSFGWDLAK 96 (525)
T ss_dssp CTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSS--CHHHH-HHHHGGGTCCHHH
T ss_pred chhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeC--CHHHH-HHHHHHcCCChHH
Confidence 345666665 555677 9999999999999999995 4444322 3467776544 22221 11222221110
Q ss_pred --------------CC-C------cChHHHHHHHHHHHHccCcEEEEEcCCcccc-----cccccCCCCccccccccCCC
Q 046345 238 --------------GL-N------ENTFQKAYRLCERLKKEKKVLIILDNIWTKL-----ELDVVGIPYGDVEKERKDDE 291 (1462)
Q Consensus 238 --------------~~-~------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----~~~~~~~~~~~l~~~~~~~~ 291 (1462)
.. . -...+...+....+..+++-++|+|.+.... |.... ..+..+.+.+. .
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~-~~l~~ll~~l~--~ 173 (525)
T 1tf7_A 97 LVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVR-RELFRLVARLK--Q 173 (525)
T ss_dssp HHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHH-HHHHHHHHHHH--H
T ss_pred hhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHH-HHHHHHHHHHH--H
Confidence 00 0 0012334455556655677799999986531 11110 00111112221 2
Q ss_pred CCcEEEEEecchhh
Q 046345 292 SGCTIILTSRNRDL 305 (1462)
Q Consensus 292 ~gs~IlvTtr~~~v 305 (1462)
.|..||+||++...
T Consensus 174 ~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 174 IGATTVMTTERIEE 187 (525)
T ss_dssp HTCEEEEEEECSSS
T ss_pred CCCEEEEEecCCCC
Confidence 47789999988654
No 336
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.88 E-value=0.054 Score=66.02 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=64.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCC----------C-----CCCcChH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGME----------F-----GLNENTF 244 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----------~-----~~~~~~~ 244 (1462)
+++|+|++|+|||||++.++....... ..++++..... ..++...+ ..++.. . +..-+..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G--~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANK--ERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 999999999999999999998875431 23455554332 23333222 222211 0 0012344
Q ss_pred HHHHHHHHHHHccCcEEEEEcCCcccccccc----cCCCCccccccccCCCCCcEEEEEecch
Q 046345 245 QKAYRLCERLKKEKKVLIILDNIWTKLELDV----VGIPYGDVEKERKDDESGCTIILTSRNR 303 (1462)
Q Consensus 245 ~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~----~~~~~~~l~~~~~~~~~gs~IlvTtr~~ 303 (1462)
+....+.......++-++|+| ..+..+... ....+..+.+.+ ...|..||+||+..
T Consensus 358 ~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l--~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYA--KQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHH--HHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHH--HhCCCEEEEEECcc
Confidence 555555565555778899999 765544330 001111122222 22477899999876
No 337
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.86 E-value=0.01 Score=77.29 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+++|+|++|.||||+.+.+ .-.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 369999999999999999999 443
No 338
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.85 E-value=0.021 Score=55.78 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=32.4
Q ss_pred ccchhHHHHHHHHHHhcc--CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAKD--DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++|+.+.++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 457888887777776652 222357899999999999999998755
No 339
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.83 E-value=1.7 Score=51.46 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=42.2
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
.++++..-+..++ ++.|.|.+|+||||||..++....... -..++|++... +..++...+.
T Consensus 192 ~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 192 ELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp HHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred HHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 3555554444566 999999999999999999999886432 12577777654 3455555553
No 340
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.81 E-value=0.27 Score=55.24 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=43.0
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFD 232 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 232 (1462)
.++++..-+..++ ++.|.|.+|+||||+|..++..... .-..++|++.. .+..++...++..
T Consensus 35 ~LD~~~gGl~~G~--LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 35 QLDNYTSGFNKGS--LVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp HHHHHHCSBCTTC--EEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 3455543344556 9999999999999999999998864 22357777664 4556666666543
No 341
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.78 E-value=0.043 Score=68.94 Aligned_cols=178 Identities=13% Similarity=0.213 Sum_probs=81.6
Q ss_pred cccchhHHHHHHHHHHhcc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH
Q 046345 157 EAFDSRMKVFQDVVEAAKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ 223 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 223 (1462)
..+.|-++..+.+.+.+.- ...+-+.++|++|+|||.+|+++++... .. ++.++ ..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~-----f~~v~----~~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN-----FISIK----GP 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CE-----EEECC----HH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--Cc-----eEEec----cc
Confidence 3455666666666555431 1234678999999999999999999873 22 22222 11
Q ss_pred HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCccccccc---------ccCCCCcccccccc--CCCC
Q 046345 224 KIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELD---------VVGIPYGDVEKERK--DDES 292 (1462)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~l~~~~~--~~~~ 292 (1462)
++ . ..... ..+..+..+++.-+...+.+|++|+++....-. ........++...- ....
T Consensus 546 ~l----~---s~~vG---ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 546 EL----L---TMWFG---ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp HH----H---TTTCS---SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred hh----h---ccccc---hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 21 1 11111 224556677777666789999999997531100 00000000110000 1223
Q ss_pred CcEEEEEecchhhhhhc-c---CCCceEEccCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHccCC
Q 046345 293 GCTIILTSRNRDLLEKD-M---KSQKNFLIEVLSKDEALQLFECIVGDSAKTSAIQPIADEIVERCEGL 357 (1462)
Q Consensus 293 gs~IlvTtr~~~v~~~~-~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 357 (1462)
+.-||-||...+..... . .-.+.+.+..-+.++-.++|+.+.......++ .-...|++.+.|.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~--~dl~~la~~t~g~ 682 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD--VDLEFLAKMTNGF 682 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCC--CCHHHHHHhCCCC
Confidence 33344455555443111 1 22457888877777777888776643221111 1134456666553
No 342
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.73 E-value=0.4 Score=55.66 Aligned_cols=91 Identities=23% Similarity=0.367 Sum_probs=58.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCC-------C-----CCCcChHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTP-DHQKIQDKLAFDLGME-------F-----GLNENTFQ 245 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~-----~~~~~~~~ 245 (1462)
..++|+|.+|+|||+|+..+.+... +.+-+.++++-+++.. .+.++.+++...=... . ..++....
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~ 232 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHH
Confidence 3899999999999999999998864 2345667788887764 4566777776542221 0 01122222
Q ss_pred H------HHHHHHHHH--ccCcEEEEEcCCccc
Q 046345 246 K------AYRLCERLK--KEKKVLIILDNIWTK 270 (1462)
Q Consensus 246 ~------~~~l~~~l~--~~k~~LlVlDdv~~~ 270 (1462)
+ ...+.+++. +++++|+++||+...
T Consensus 233 r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1 122334443 389999999998653
No 343
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.72 E-value=0.04 Score=60.92 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=35.3
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+....++ ...++.+...+..++ +++|+|++|+|||||++.+.+-.
T Consensus 104 ~~~vs~~y~-~~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 104 YQNIELITF-INALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTTCCHHHH-HHHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEEEEcC-hhhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc
Confidence 344443444 445666666566677 99999999999999999999987
No 344
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.72 E-value=0.031 Score=59.23 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
++.+.-.+..++ +++|+|++|+|||||++.+....
T Consensus 13 l~~isl~i~~G~--~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNIY--PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CCC--CEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCCceecCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 445555555666 99999999999999999999866
No 345
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.71 E-value=0.076 Score=68.23 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAK 200 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~ 200 (1462)
..+++|+|++|+||||+.+.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999843
No 346
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.67 E-value=0.24 Score=54.84 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=50.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCH-HHHHHHHHHHhCCCCC---CCcChHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDH-QKIQDKLAFDLGMEFG---LNENTFQKAYRLCER 253 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 253 (1462)
..+++++|.+|+||||++..++....... ..+.++........ ...+..+....+...- ...+..+......+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 45999999999999999999999886432 24555555332211 1123344455554322 112233333444444
Q ss_pred HHccCcEEEEEcCC
Q 046345 254 LKKEKKVLIILDNI 267 (1462)
Q Consensus 254 l~~~k~~LlVlDdv 267 (1462)
+...+.=++|+|.+
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43234457889987
No 347
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.61 E-value=0.049 Score=55.31 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=62.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC---CCHHHHHHHHHH---HhC--CCCCCCcC--hHHH--
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT---PDHQKIQDKLAF---DLG--MEFGLNEN--TFQK-- 246 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~---~l~--~~~~~~~~--~~~~-- 246 (1462)
..|.|++..|.||||.|-..+-+..- .. ..+.++..-.. .....++..+.- ..+ ........ +...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g-~G-~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG-HG-KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH-TT-CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 46777777889999999999998852 22 34555654332 223333333310 001 11110110 1111
Q ss_pred --HHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhh
Q 046345 247 --AYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDL 305 (1462)
Q Consensus 247 --~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v 305 (1462)
.....+.+..++-=|||||++.....+..+ +...+.+.+........||+|+|...-
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l--~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYL--PLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS--CHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCC--CHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 222223332233449999998654333222 112223333334567789999998744
No 348
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.60 E-value=3.2 Score=48.10 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=48.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHH--HHHHHHHHhCCCCCC---CcChHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQK--IQDKLAFDLGMEFGL---NENTFQKAYRLC 251 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 251 (1462)
...+++++|++|+||||++..++....... ..+..+... ...... .+.......+.+.-. ..+..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeecc-ccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 345899999999999999999999886432 235555543 233222 233444555543211 122233334444
Q ss_pred HHHHccCcEEEEEcCC
Q 046345 252 ERLKKEKKVLIILDNI 267 (1462)
Q Consensus 252 ~~l~~~k~~LlVlDdv 267 (1462)
+.++...-=++|+|-+
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 4442122226677754
No 349
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.53 E-value=0.043 Score=62.66 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=38.0
Q ss_pred cccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 157 EAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..++|+++.++.+...+..+. -+.++|++|+|||++|+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 346799999999888887765 68899999999999999999876
No 350
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.48 E-value=0.14 Score=56.94 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=49.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHH--HHHHHHHHHhCCCCCCC---cChHHHH-HHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQ--KIQDKLAFDLGMEFGLN---ENTFQKA-YRL 250 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~---~~~~~~~-~~l 250 (1462)
...+++|+|++|+||||++..++....... ..+.++.... +... +-+...++..+...... ....... ..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 346999999999999999999999886432 2355555432 2221 22334455555432111 1112221 223
Q ss_pred HHHHHccCcEEEEEcCCc
Q 046345 251 CERLKKEKKVLIILDNIW 268 (1462)
Q Consensus 251 ~~~l~~~k~~LlVlDdv~ 268 (1462)
...+. .+.-++|+|.+.
T Consensus 180 ~~a~~-~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALA-RNKDVVIIDTAG 196 (306)
T ss_dssp HHHHH-TTCSEEEEEECC
T ss_pred HHHHh-cCCCEEEEECCC
Confidence 33332 344488889764
No 351
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.48 E-value=0.047 Score=56.89 Aligned_cols=24 Identities=42% Similarity=0.427 Sum_probs=22.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|+|++|+||||+|+.++...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 489999999999999999999887
No 352
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.46 E-value=0.054 Score=67.12 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.+.+-..
T Consensus 369 ~G~--~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGS--VTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTC--EEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCcC
Confidence 455 999999999999999999988764
No 353
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.45 E-value=0.15 Score=59.49 Aligned_cols=90 Identities=21% Similarity=0.352 Sum_probs=52.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCC------CCCCcChHHH------
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTP-DHQKIQDKLAFDLGME------FGLNENTFQK------ 246 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~------ 246 (1462)
.++|+|.+|+|||||++.+....... .-+..+++.+++.. ...++..++...=... ....+....+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 79999999999999999999887532 22445666666654 3445555554320000 0001111111
Q ss_pred HHHHHHHHH--ccCcEEEEEcCCccc
Q 046345 247 AYRLCERLK--KEKKVLIILDNIWTK 270 (1462)
Q Consensus 247 ~~~l~~~l~--~~k~~LlVlDdv~~~ 270 (1462)
...+.+++. +++++|+++||+...
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 112333333 489999999999643
No 354
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.33 E-value=0.046 Score=57.36 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=24.3
Q ss_pred hccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 173 AKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 173 l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..++ +++|+|++|+|||||++.+.....
T Consensus 17 i~~Ge--i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGR--VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCC--EEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCC--EEEEECCCCCCHHHHHHHHHhhCC
Confidence 44566 999999999999999999998763
No 355
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.30 E-value=0.043 Score=56.73 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
.+++|+|++|+||||+++.++..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999875
No 356
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.26 E-value=0.11 Score=49.43 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=26.6
Q ss_pred EEEecCCCCC--CCCcccCCCCcCcEEEecCcccCC--ccccccccCCcEEEecCCCC
Q 046345 574 VLDFTGIHFS--SLPSSLGRLTSLQTLCLHWCELED--IAIVGQLKKLEILSFRDSDI 627 (1462)
Q Consensus 574 ~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~i 627 (1462)
+++.+++.++ .+|..+. .+|++|+|++|.|+. +..|..+.+|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5556666665 5554332 245555555555554 23344555555555555543
No 357
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.25 E-value=0.046 Score=55.85 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
++++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999999875
No 358
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.21 E-value=0.052 Score=56.63 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
...+|+|+|++|+||||+++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34599999999999999999999876
No 359
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.18 E-value=0.065 Score=55.83 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=24.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
....+|+|+|++|+||||+|+.++....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446999999999999999999999885
No 360
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.16 E-value=0.02 Score=73.16 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=65.9
Q ss_pred chhHHHHHHHHH----Hhc------cCCceEEEEEecCCCcHHHHHHHHHHHHhhc--cCC--CeEEEEEecC-CCCHHH
Q 046345 160 DSRMKVFQDVVE----AAK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMED--KSF--DKVVMAEVTQ-TPDHQK 224 (1462)
Q Consensus 160 ~gr~~~~~~l~~----~l~------~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~--~~f--~~~~wv~~~~-~~~~~~ 224 (1462)
-||...++.+.. .+. -.+..+++|+|++|+||||+.+.++.-.... ..| .....+.+-. -+....
T Consensus 645 ~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig 724 (918)
T 3thx_B 645 NGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMG 724 (918)
T ss_dssp EECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC-
T ss_pred eccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCC
Confidence 478877775531 111 1234599999999999999999987543211 111 1111111100 000000
Q ss_pred HHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 225 IQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
+...+.... ..-.........+... ..++-|++||++....+...-......+.+.+. ...|+.||++||+.+
T Consensus 725 ~~d~l~~~~----stfs~em~~~~~il~~--a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~-~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 725 AADNIYKGR----STFMEELTDTAEIIRK--ATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFVTHYPP 797 (918)
T ss_dssp -------------CCHHHHHHHHHHHHHH--CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH-HTTCCEEEEECSCGG
T ss_pred hHHHHHHhH----HHhhHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-HhcCCeEEEEeCcHH
Confidence 001111100 0000111122222222 367889999999877554321111111112111 235889999999987
Q ss_pred hh
Q 046345 305 LL 306 (1462)
Q Consensus 305 v~ 306 (1462)
++
T Consensus 798 l~ 799 (918)
T 3thx_B 798 VC 799 (918)
T ss_dssp GG
T ss_pred HH
Confidence 76
No 361
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.15 E-value=0.05 Score=55.10 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|.|+.|+||||+|+.++...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999886
No 362
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.14 E-value=0.049 Score=64.98 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=38.5
Q ss_pred ccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 158 AFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++|+++.++.+...+..+. -|.++|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHh
Confidence 46899999999888887776 789999999999999999998763
No 363
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.08 E-value=0.052 Score=58.42 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhcc---CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 161 SRMKVFQDVVEAAKD---DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~---~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+....++.+...+.. +. +|+|+|+.|+||||+++.++...
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence 444567777666665 66 89999999999999999999977
No 364
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.91 E-value=0.045 Score=56.31 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++++|+|++|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999998874
No 365
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.87 E-value=0.67 Score=66.18 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=48.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHccCc
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGLNENTFQKAYRLCERLKKEKK 259 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 259 (1462)
-+.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+.+.+...+......... ...-...+++
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk~ 1337 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIKN 1337 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSSC
T ss_pred eEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCce
Confidence 78899999999999998776543 122 356677787777777776666554322100000 0000003678
Q ss_pred EEEEEcCCc
Q 046345 260 VLIILDNIW 268 (1462)
Q Consensus 260 ~LlVlDdv~ 268 (1462)
.++.+||+.
T Consensus 1338 ~VlFiDEin 1346 (2695)
T 4akg_A 1338 LVLFCDEIN 1346 (2695)
T ss_dssp EEEEEETTT
T ss_pred EEEEecccc
Confidence 899999964
No 366
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.84 E-value=0.053 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+++|+|++|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 389999999999999999999875
No 367
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.84 E-value=0.057 Score=55.03 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999876
No 368
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.81 E-value=0.097 Score=58.60 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=31.0
Q ss_pred HHHHHHHHHHh----ccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 163 MKVFQDVVEAA----KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 163 ~~~~~~l~~~l----~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+...+.++..+ ..++...|+|+|++|+||||+++.++....
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34444444443 466767799999999999999999998874
No 369
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.77 E-value=0.05 Score=55.17 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|+|++|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999876
No 370
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.75 E-value=0.11 Score=55.26 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 164 KVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 164 ~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344445545556778999999999999999999998864
No 371
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.74 E-value=0.066 Score=58.78 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=38.9
Q ss_pred cccchhHHHHHHHHHHhcc--CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC
Q 046345 157 EAFDSRMKVFQDVVEAAKD--DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT 219 (1462)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~--~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 219 (1462)
..++|+...+..+.+.+.. .....|.|+|.+|+|||++|+.+++..... . ...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~-~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-Q-GPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-T-SCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-C-CCeEEEecCCC
Confidence 4467888887777765541 222467899999999999999999876321 1 22455565543
No 372
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.73 E-value=0.5 Score=52.27 Aligned_cols=90 Identities=23% Similarity=0.217 Sum_probs=52.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCCC---CcChHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-PDHQKIQDKLAFDLGMEFGL---NENTFQKAYRLCER 253 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 253 (1462)
..+++++|.+|+||||++..++......+ ..+.+++.... ......+.......+..... ..+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 56999999999999999999999886432 24666665432 22223344455555543211 12333444445555
Q ss_pred HHccCcEEEEEcCCcc
Q 046345 254 LKKEKKVLIILDNIWT 269 (1462)
Q Consensus 254 l~~~k~~LlVlDdv~~ 269 (1462)
+...+-=++|+|-+-.
T Consensus 176 ~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred HHhCCCCEEEEeCCCC
Confidence 5322223788887643
No 373
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.70 E-value=0.053 Score=62.52 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=36.3
Q ss_pred CccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 155 DYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
....++|.+...+.+......+...-+.|+|++|+|||++|+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456889888766655444333333588999999999999999999763
No 374
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.66 E-value=0.055 Score=56.26 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++++|+|++|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4899999999999999999998763
No 375
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.64 E-value=0.12 Score=65.32 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+..+++|+|++|+||||+.+.++.-.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 34599999999999999999998864
No 376
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.59 E-value=0.077 Score=55.88 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=24.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+..+|+|+|++|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999999864
No 377
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.53 E-value=0.067 Score=55.18 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAK 200 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~ 200 (1462)
.+++|+|++|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 378
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.52 E-value=0.064 Score=66.57 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=42.7
Q ss_pred cCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 153 VKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
......++|.+..++.+...+..+. .+.|+|++|+||||||+.+++...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCC
Confidence 3445678999999999999888886 899999999999999999999764
No 379
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.48 E-value=0.072 Score=57.68 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+|+|+|++|+||||+++.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999999776
No 380
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.41 E-value=0.073 Score=55.83 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..+++|+|++|+||||+++.+.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35999999999999999999998763
No 381
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.39 E-value=0.08 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+++|+|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998875
No 382
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.34 E-value=0.11 Score=55.17 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 162 RMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++..+.+...+.....++|+|+|.+|+|||||+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344455555555556778999999999999999999998863
No 383
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.33 E-value=0.078 Score=54.43 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+.|.|+|+.|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999877
No 384
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.25 E-value=0.066 Score=55.95 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+|+|.|++|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999886
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.21 E-value=0.092 Score=58.39 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=25.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhc
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMED 205 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~ 205 (1462)
+..+++|+|++|+||||+++.++......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 34599999999999999999999988643
No 386
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.18 E-value=0.09 Score=59.68 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=34.5
Q ss_pred CCccccch-hHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 154 KDYEAFDS-RMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 154 ~~~~~~~g-r~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+....++ ....++.+ -.+..++ +++|+|++|+|||||++.+++...
T Consensus 49 ~~l~~~~~tg~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 49 QVIDQPFILGVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CCCCSEECCSCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cccceecCCCCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 33344444 33566666 4455677 999999999999999999999874
No 387
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.14 E-value=0.13 Score=48.96 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=34.3
Q ss_pred EEEecCCCCC--ccchhhccccccCEEccCCcccccccCccccccccccceeeccCccc
Q 046345 619 ILSFRDSDIK--ELPLEIGLLTRLSLLDLSDCWSLEVIAPNVISKLSRLEELYMGGSFS 675 (1462)
Q Consensus 619 ~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 675 (1462)
+++.++++++ .+|..+ -.+|++|+|++| .++.+|.+.|..+.+|++|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 5566666666 666432 235677777776 56667766666777777777766643
No 388
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.08 E-value=0.14 Score=51.06 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++++|+|..|+|||||+..+.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 456999999999999999999999875
No 389
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.04 E-value=0.45 Score=56.42 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=41.9
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 231 (1462)
++.+..-+..++ ++.|.|.+|+||||+|..++....... -..++|++.. .+..++...++.
T Consensus 190 LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 190 LDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp HHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred hhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 455443344455 999999999999999999999875322 2357777765 345566666553
No 390
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.04 E-value=0.085 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAK 200 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~ 200 (1462)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999988
No 391
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.04 E-value=0.075 Score=54.01 Aligned_cols=20 Identities=35% Similarity=0.606 Sum_probs=18.8
Q ss_pred eEEEEEecCCCcHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQV 198 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~ 198 (1462)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 392
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.02 E-value=1.1 Score=53.26 Aligned_cols=91 Identities=22% Similarity=0.163 Sum_probs=47.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCC---CCcChHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQT-PDHQKIQDKLAFDLGMEFG---LNENTFQKAYRLCE 252 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 252 (1462)
+.++|+|+|.+|+||||++..++...... . ..+..|+.... ....+.+.......+.+.. ...+..+.......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G-~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~ 177 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK-G-WKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE 177 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT-T-CCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-C-CeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHH
Confidence 46799999999999999999999887633 2 23455554322 2222333333444444311 11222233233333
Q ss_pred HHHccCcEEEEEcCCcc
Q 046345 253 RLKKEKKVLIILDNIWT 269 (1462)
Q Consensus 253 ~l~~~k~~LlVlDdv~~ 269 (1462)
.+.....-++|+|-+-.
T Consensus 178 ~~~~~~~DvvIIDTpG~ 194 (504)
T 2j37_W 178 KFKNENFEIIIVDTSGR 194 (504)
T ss_dssp HHHHTTCCEEEEEECCC
T ss_pred HHHHCCCcEEEEeCCCC
Confidence 33223334677787643
No 393
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.97 E-value=0.081 Score=66.62 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=32.5
Q ss_pred cEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceEEc
Q 046345 259 KVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNFLI 318 (1462)
Q Consensus 259 ~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~~l 318 (1462)
+-+|++|++....|..........+.+. ...|..||++||+..++. .+.+++.+
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l---~~~g~tvi~vtHd~~~~~---~~d~i~~l 618 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRL---VDNGDTVLVIEHNLDVIK---TADYIIDL 618 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHHHT---TCSEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHHHH---hCCEEEEe
Confidence 5799999999876644322111111111 223778999999988762 24556655
No 394
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.92 E-value=0.082 Score=53.10 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=24.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhc
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMED 205 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~ 205 (1462)
++++|+|..|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999998654
No 395
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.92 E-value=0.093 Score=56.92 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999876
No 396
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.91 E-value=0.09 Score=53.89 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++++|+|++|+|||||++.+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3499999999999999999999875
No 397
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.91 E-value=0.1 Score=54.00 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=23.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999874
No 398
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.88 E-value=0.11 Score=53.68 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 399
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.82 E-value=0.4 Score=55.91 Aligned_cols=91 Identities=23% Similarity=0.374 Sum_probs=59.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCC--------C-----CCCcChH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTP-DHQKIQDKLAFDLGME--------F-----GLNENTF 244 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~-----~~~~~~~ 244 (1462)
..++|+|.+|+|||+|+..+.+... +.+-+.++++-+++.. .+.++.+++...=... . ..++...
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 4899999999999999999999864 2445778888888765 4667777776532121 0 0011212
Q ss_pred HH------HHHHHHHHHc--cCcEEEEEcCCccc
Q 046345 245 QK------AYRLCERLKK--EKKVLIILDNIWTK 270 (1462)
Q Consensus 245 ~~------~~~l~~~l~~--~k~~LlVlDdv~~~ 270 (1462)
.+ ...+.+++.. ++.+|+++||+...
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 11 2233455543 79999999998643
No 400
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.77 E-value=0.092 Score=55.30 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+++|+|++|+|||||++.+.....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3999999999999999999999764
No 401
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.74 E-value=0.11 Score=53.28 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=24.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
...+|+|.|++|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4468999999999999999999998853
No 402
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.69 E-value=0.085 Score=53.56 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.|+|.|++|+||||+|+.++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999887
No 403
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.66 E-value=0.1 Score=54.75 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+++|+|++|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 389999999999999999998876
No 404
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.62 E-value=0.39 Score=66.03 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=57.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCcChHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFG-----LNENTFQKAYRLCE 252 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 252 (1462)
.+.|.|+|++|+|||+||.+++..... .=..++|+++.+.++... ++.++.... .....++....+.+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 349999999999999999999887742 223578888888777665 455553321 11222333333444
Q ss_pred HHHccCcEEEEEcCCcc
Q 046345 253 RLKKEKKVLIILDNIWT 269 (1462)
Q Consensus 253 ~l~~~k~~LlVlDdv~~ 269 (1462)
...+.+.-+||+|++..
T Consensus 1500 lvr~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVAA 1516 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHhcCCCCEEEEcChhH
Confidence 44456788999999953
No 405
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.58 E-value=0.12 Score=57.36 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=24.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
..+++|+|++|+||||+++.++.....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 349999999999999999999998864
No 406
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.57 E-value=0.073 Score=72.19 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ .|+|||+.|+|||||++.+.+-..
T Consensus 1104 ~Ge--~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1104 PGQ--TLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp TTC--EEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCC--EEEEECCCCChHHHHHHHHhcCcc
Confidence 455 999999999999999999987664
No 407
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.54 E-value=0.092 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+++|+|++|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 789999999999999999999875
No 408
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.53 E-value=0.14 Score=59.12 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=35.5
Q ss_pred cchhHHHHHHHHHHhc-------------c--CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 159 FDSRMKVFQDVVEAAK-------------D--DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 159 ~~gr~~~~~~l~~~l~-------------~--~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
++|.+..++.+...+. . ...+.+.++|++|+|||++|+.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5788888888887772 1 133578999999999999999999887
No 409
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.49 E-value=0.1 Score=55.57 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|+|++|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999876
No 410
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.48 E-value=0.16 Score=56.08 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 411
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.43 E-value=0.13 Score=53.80 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+.++|.|.|++|+||+|.|+.++..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999887
No 412
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.42 E-value=0.15 Score=52.02 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=52.6
Q ss_pred hhcCCcceEEEecCC-CCCC-----CCcccCCCCcCcEEEecCcccCCc------cccccccCCcEEEecCCCCCc----
Q 046345 566 FEGTEGLKVLDFTGI-HFSS-----LPSSLGRLTSLQTLCLHWCELEDI------AIVGQLKKLEILSFRDSDIKE---- 629 (1462)
Q Consensus 566 f~~l~~Lr~L~Ls~~-~i~~-----lp~~i~~L~~Lr~L~L~~~~l~~~------~~i~~L~~L~~L~L~~~~i~~---- 629 (1462)
...-..|+.|+|+++ .|.. +-+.+..-..|+.|+|++|.+.+. ..+..-+.|++|+|++|.|..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445577889999885 6652 445566667888888888887751 344456678888888877752
Q ss_pred -cchhhccccccCEEccCC
Q 046345 630 -LPLEIGLLTRLSLLDLSD 647 (1462)
Q Consensus 630 -lp~~i~~L~~L~~L~L~~ 647 (1462)
+-..+..-+.|++|+|++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 222233334566666654
No 413
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.41 E-value=0.11 Score=52.21 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
...+|+|.|+.|+||||+|+.++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999887
No 414
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.39 E-value=0.11 Score=53.57 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+|+|.|++|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999774
No 415
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.38 E-value=0.13 Score=57.54 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=35.5
Q ss_pred ccchhHHHHHHHHHHhcc--CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAKD--DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 467888888887776652 333467899999999999999999865
No 416
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.37 E-value=0.096 Score=54.75 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+|+|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3489999999999999999998876
No 417
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.35 E-value=0.11 Score=54.45 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAK 200 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~ 200 (1462)
.+|+|+|++|+||||+++.+++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999988
No 418
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.32 E-value=0.64 Score=54.54 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=24.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
...+++|+|++|+||||+++.++.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3469999999999999999999998854
No 419
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.30 E-value=0.096 Score=53.26 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+.|+|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998775
No 420
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.26 E-value=0.1 Score=53.32 Aligned_cols=24 Identities=46% Similarity=0.493 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+.|.|.|++|+||||+|+.++...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 421
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.18 E-value=0.14 Score=53.15 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+|+|.|+.|+||||+|+.++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999876
No 422
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=91.17 E-value=0.12 Score=65.33 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=34.1
Q ss_pred CcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceEEc
Q 046345 258 KKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNFLI 318 (1462)
Q Consensus 258 k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~~l 318 (1462)
++-++|||++.+..|..........+.+. ...|..||++||+.+++. .+.+++.+
T Consensus 751 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L---~~~G~tVIvisHdl~~i~---~aDrii~L 805 (842)
T 2vf7_A 751 GGTVYVLDEPTTGLHPADVERLQRQLVKL---VDAGNTVIAVEHKMQVVA---ASDWVLDI 805 (842)
T ss_dssp SCEEEEEECTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHHHT---TCSEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEcCCHHHHH---hCCEEEEE
Confidence 36899999999886654432211111111 224778999999988762 25566666
No 423
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.08 E-value=0.12 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999873
No 424
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.97 E-value=0.14 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999987
No 425
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.88 E-value=0.19 Score=58.30 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+.++|++|+|||++|+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999877
No 426
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.87 E-value=0.15 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
++..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45578999999999999999999875
No 427
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.83 E-value=0.13 Score=53.93 Aligned_cols=25 Identities=44% Similarity=0.647 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+|+|+|++|+||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998754
No 428
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.83 E-value=0.15 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..|++.|++|+||||+|+.++...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 429
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.74 E-value=0.12 Score=54.24 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAK 200 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~ 200 (1462)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 430
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.72 E-value=0.15 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|.|+.|+||||+|+.++...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 431
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.72 E-value=0.11 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999976
No 432
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.71 E-value=0.28 Score=52.74 Aligned_cols=27 Identities=22% Similarity=0.110 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.....|+|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999999876
No 433
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.66 E-value=0.17 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=24.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
..+++|+|++|+||||+++.++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 359999999999999999999998864
No 434
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.65 E-value=0.15 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|.|+.|+||||+|+.++...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999987
No 435
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.64 E-value=0.16 Score=52.88 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+..+|+|.|+.|+||||+|+.++...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999999865
No 436
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.62 E-value=0.15 Score=55.37 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
.++.+. +..++ +++|+|++|+||||+++.+......
T Consensus 16 vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 16 KVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp HHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhCCC
Confidence 445544 33444 9999999999999999999997753
No 437
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.59 E-value=0.13 Score=55.74 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=22.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|+|++|+||||+++.++...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 499999999999999999999876
No 438
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.54 E-value=0.3 Score=54.66 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
++..+|+|+|++|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3446999999999999999999999774
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.45 E-value=0.19 Score=59.01 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=34.7
Q ss_pred CCccccch-hHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 154 KDYEAFDS-RMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 154 ~~~~~~~g-r~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+....++ ....++.+ ..+..++ +++|+|++|+|||||++.+++...
T Consensus 135 ~~v~~~~~tg~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CCCCSBCCCSCHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eccceecCCCceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhcccC
Confidence 33444444 34566666 4455666 999999999999999999999874
No 440
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.44 E-value=0.62 Score=59.24 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=36.5
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLG 234 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 234 (1462)
+.+...+..++ ++.|+|+.|+||||++..+.............+.+......-..++...++..++
T Consensus 100 ~~i~~~l~~~~--~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~ 165 (773)
T 2xau_A 100 DEFLKLYQNNQ--IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMD 165 (773)
T ss_dssp HHHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCC--eEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhC
Confidence 44555555666 8999999999999977666554422211122333333322223344445555544
No 441
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.40 E-value=0.12 Score=54.20 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=58.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC--CcChHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL--NENTFQKAYRLCERLK 255 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 255 (1462)
..++.++|..|+||||++..++.+..... ..++.+..... .. ....++..++..... .....+....+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 35889999999999999999999885332 23444432221 11 222445555543321 0111222222222221
Q ss_pred ccCcEEEEEcCCccc--ccccccCCCCccccccccCCCCCcEEEEEecchh
Q 046345 256 KEKKVLIILDNIWTK--LELDVVGIPYGDVEKERKDDESGCTIILTSRNRD 304 (1462)
Q Consensus 256 ~~k~~LlVlDdv~~~--~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~ 304 (1462)
.++.-++|+|++... ..++.+. .+ ...|..||+|-+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~--------~L--~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN--------IL--AENGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH--------HH--HHTTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHH--------HH--HhCCCeEEEEecccc
Confidence 123459999999642 1111111 11 113778999988543
No 442
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.35 E-value=0.16 Score=55.26 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=23.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..+|.|.|++|+||||+|+.++....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999864
No 443
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.31 E-value=0.14 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 444
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.30 E-value=0.16 Score=57.47 Aligned_cols=42 Identities=19% Similarity=0.379 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 161 SRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
+....++.+... -.+..+++|+|++|+|||||.+.+......
T Consensus 40 ~~~~~l~~i~~~--~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 40 AVRDLIDAVLPQ--TGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHHHHHGGG--CCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHhCCcc--cCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 333444444422 344559999999999999999999987754
No 445
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.28 E-value=0.18 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+|+|.|+.|+||||+|+.++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 446
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.27 E-value=0.27 Score=50.14 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=28.7
Q ss_pred HHHHHHHHhcc-CCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 165 VFQDVVEAAKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 165 ~~~~l~~~l~~-~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+..+..++.. ++...+.++|++|+||||+|..+++...
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445555543 2234799999999999999999999874
No 447
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.25 E-value=0.17 Score=53.57 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
...|+|.|+.|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999877
No 448
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.21 E-value=0.3 Score=66.21 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=23.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ .++|||+.|+|||||++.+.+...
T Consensus 443 ~G~--~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQ--TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTC--EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCc--EEEEEecCCCcHHHHHHHhccccc
Confidence 455 999999999999999999988764
No 449
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.18 E-value=0.17 Score=53.12 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=23.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+|+|.|+.|+||||+|+.++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999999874
No 450
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.05 E-value=0.17 Score=54.84 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+...+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 455789999999999999999999875
No 451
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.02 E-value=0.18 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999976
No 452
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.02 E-value=0.21 Score=50.99 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=41.2
Q ss_pred CCCcCcEEEecCc-ccCC------ccccccccCCcEEEecCCCCC-----ccchhhccccccCEEccCCcccccccCcc-
Q 046345 591 RLTSLQTLCLHWC-ELED------IAIVGQLKKLEILSFRDSDIK-----ELPLEIGLLTRLSLLDLSDCWSLEVIAPN- 657 (1462)
Q Consensus 591 ~L~~Lr~L~L~~~-~l~~------~~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~~p~~- 657 (1462)
+-..|+.|+|+++ .+.. ...+..-+.|+.|+|++|.|. .+-..+..-+.|++|+|+.| .+..-...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence 3445666666664 5543 134445556666666666654 22233444466666666665 33322111
Q ss_pred ---ccccccccceeeccC
Q 046345 658 ---VISKLSRLEELYMGG 672 (1462)
Q Consensus 658 ---~l~~L~~L~~L~l~~ 672 (1462)
.+..=+.|++|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 133334566666654
No 453
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.97 E-value=0.94 Score=53.31 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=40.6
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHH
Q 046345 165 VFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLA 230 (1462)
Q Consensus 165 ~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 230 (1462)
.++++..-+..+. ++.|.|.+|+||||+|..++.....+ -..++|++.... ..++...+.
T Consensus 186 ~LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 186 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp HHHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHH
T ss_pred HHHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHH
Confidence 3455443344455 99999999999999999999988643 235777766543 334444444
No 454
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.96 E-value=0.18 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999876
No 455
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.95 E-value=0.21 Score=54.09 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999876
No 456
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.93 E-value=0.3 Score=49.03 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++++|+|+.|+|||||+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 56899999999999999999998864
No 457
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.87 E-value=0.28 Score=66.37 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=24.3
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 174 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 174 ~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
..++ +++|+|++|+|||||++.+.+-..
T Consensus 1057 ~~Ge--~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1057 KKGQ--TLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp CSSS--EEEEECSSSTTHHHHHHHHTTSSC
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhcCcC
Confidence 3456 999999999999999999998663
No 458
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.87 E-value=0.25 Score=55.34 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHHHhcc-CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCe-EEEEEecCC
Q 046345 169 VVEAAKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDK-VVMAEVTQT 219 (1462)
Q Consensus 169 l~~~l~~-~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~ 219 (1462)
+++.+.. ++-..++|+|.+|+|||+|+..+++....+ +-+. ++++-+++.
T Consensus 165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER 216 (427)
T 3l0o_A 165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCC
T ss_pred hhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccC
Confidence 4444442 333489999999999999999999876532 2232 355666654
No 459
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.85 E-value=0.11 Score=55.59 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=16.0
Q ss_pred eEEEEEecCCCcHHHHHHHHH-HHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVA-KQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~-~~~ 202 (1462)
.+++|+|++|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 399999999999999999999 765
No 460
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.70 E-value=0.17 Score=58.58 Aligned_cols=36 Identities=25% Similarity=0.176 Sum_probs=29.2
Q ss_pred HHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHH
Q 046345 166 FQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 201 (1462)
Q Consensus 166 ~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 201 (1462)
++.+...+..+....++|+|++|+|||||++.+++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 777777677788333999999999999999999875
No 461
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.69 E-value=0.21 Score=58.15 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=35.1
Q ss_pred ccchhHHHHHHHHHHhcc--------------CCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 158 AFDSRMKVFQDVVEAAKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--------------~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.++|.++.++.+..++.. ...+-+.++|++|+||||+|+.++...
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 467888877777666521 123568999999999999999999987
No 462
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=89.67 E-value=0.4 Score=60.85 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=34.1
Q ss_pred CcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceEEc
Q 046345 258 KKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNFLI 318 (1462)
Q Consensus 258 k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~~l 318 (1462)
++-++|||++....|.......+..+.+. ...|..||++|++.+++. .+.+++.+
T Consensus 866 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L---~~~G~TVIvisHdl~~i~---~aDrIivL 920 (972)
T 2r6f_A 866 GRTLYILDEPTTGLHVDDIARLLDVLHRL---VDNGDTVLVIEHNLDVIK---TADYIIDL 920 (972)
T ss_dssp SCEEEEEECTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHHHT---TCSEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEcCCHHHHH---hCCEEEEE
Confidence 35899999999886654432221111111 224778999999988752 25566666
No 463
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.64 E-value=0.4 Score=53.51 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=32.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecC
Q 046345 176 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQ 218 (1462)
Q Consensus 176 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 218 (1462)
+..++|+|.|-|||||||.+..++--....++ .+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk--kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC--eEEEEecCC
Confidence 45679999999999999999999998864333 477777764
No 464
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.63 E-value=0.13 Score=52.47 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=18.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|.|.|+.|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999998876
No 465
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.58 E-value=0.2 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999874
No 466
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.55 E-value=0.19 Score=53.28 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
...|+|.|+.|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999887
No 467
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.50 E-value=0.13 Score=54.25 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999874
No 468
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.49 E-value=0.2 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 469
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.49 E-value=0.2 Score=54.72 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
.++|+|++|+|||||.+.+++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999998743
No 470
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.49 E-value=0.23 Score=52.29 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=23.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.+|+|.|+.|+||||+|+.+.....
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999874
No 471
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.47 E-value=0.22 Score=52.28 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=25.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCe
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDK 210 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~ 210 (1462)
.+|+|.|+.|+||||+|+.+...... .+++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 48999999999999999999998742 34444
No 472
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.47 E-value=0.21 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 473
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.33 E-value=0.39 Score=64.89 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.6
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.++ +++|+|++|+|||||++.+.+...
T Consensus 415 ~G~--~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 415 SGQ--TVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TTC--EEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 455 999999999999999999987664
No 474
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.27 E-value=0.21 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.-.|+|+|.+|+|||||++.+.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998865
No 475
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.27 E-value=0.26 Score=56.44 Aligned_cols=26 Identities=27% Similarity=0.128 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
...+++|+|++|+|||||++.+++..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33499999999999999999999865
No 476
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.26 E-value=0.22 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=22.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|.|++|+||||+|+.++...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999887
No 477
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.26 E-value=0.73 Score=62.56 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHH--HhccCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC--
Q 046345 164 KVFQDVVE--AAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL-- 239 (1462)
Q Consensus 164 ~~~~~l~~--~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-- 239 (1462)
.+++++.. -+..+. ++.|.|++|+||||||..++........ .++|++.....+... ++.++.....
T Consensus 718 ~eLD~lLg~GGl~~G~--lVlI~G~PG~GKTtLal~lA~~aa~~g~--~VlyiS~Ees~~ql~-----A~~lGvd~~~L~ 788 (1706)
T 3cmw_A 718 LSLDIALGAGGLPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIY-----ARKLGVDIDNLL 788 (1706)
T ss_dssp HHHHHHTSSSSEETTS--EEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEECTTSCCCHHH-----HHHTTCCGGGCE
T ss_pred HHHHHHhccCCcCCCc--eEEEECCCCCCcHHHHHHHHHHHHHcCC--CeEEEeccchHHHHH-----HHHcCCChhheE
Q ss_pred ---CcChHHHHHHHHHHHHccCcEEEEEcCC
Q 046345 240 ---NENTFQKAYRLCERLKKEKKVLIILDNI 267 (1462)
Q Consensus 240 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv 267 (1462)
.....+....+.......+.-++|+|.+
T Consensus 789 i~~~~~leei~~~l~~lv~~~~~~lVVIDsL 819 (1706)
T 3cmw_A 789 CSQPDTGEQALEICDALARSGAVDVIVVDSV 819 (1706)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred EecCCcHHHHHHHHHHHHHccCCCEEEEech
No 478
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.24 E-value=0.24 Score=50.39 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhh
Q 046345 178 LNIIGVYGMGGVGKTTLVKQVAKQVME 204 (1462)
Q Consensus 178 ~~vv~I~G~~GvGKTtLa~~~~~~~~~ 204 (1462)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 348999999999999999999998743
No 479
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.19 E-value=0.18 Score=57.85 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=28.6
Q ss_pred HHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 167 QDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 167 ~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
+.+...+..++ +++|+|++|+|||||++.+.+...
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCC
Confidence 45555555677 899999999999999999988764
No 480
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.18 E-value=0.22 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..|+|.|+.|+||||+|+.++...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999866
No 481
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=89.11 E-value=0.63 Score=59.51 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=34.6
Q ss_pred CcEEEEEcCCcccccccccCCCCccccccccCCCCCcEEEEEecchhhhhhccCCCceEEcc
Q 046345 258 KKVLIILDNIWTKLELDVVGIPYGDVEKERKDDESGCTIILTSRNRDLLEKDMKSQKNFLIE 319 (1462)
Q Consensus 258 k~~LlVlDdv~~~~~~~~~~~~~~~l~~~~~~~~~gs~IlvTtr~~~v~~~~~~~~~~~~l~ 319 (1462)
++-++|||++.+..|..........+.+. ...|..||++||+.+++. .+.+++.+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L---~~~G~TVIvI~HdL~~i~---~ADrIivLg 881 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRL---VDRGNTVIVIEHNLDVIK---NADHIIDLG 881 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHHHT---TCSEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH---hCCEEEEec
Confidence 35899999999886654432211111111 124677999999988762 256666663
No 482
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.02 E-value=0.26 Score=51.66 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
...+|+|.|+.|+||||+|+.+.....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345999999999999999999999875
No 483
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.98 E-value=0.24 Score=51.33 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 484
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.80 E-value=0.59 Score=53.44 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=30.1
Q ss_pred HHHHHHHhc--cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 046345 166 FQDVVEAAK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 203 (1462)
Q Consensus 166 ~~~l~~~l~--~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 203 (1462)
...+...+. .++..+|+|+|.+|+||||++..++....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444444444 45678999999999999999999998875
No 485
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.80 E-value=0.21 Score=52.63 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 486
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.73 E-value=0.26 Score=51.22 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+|.|.|++|+||+|.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987
No 487
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.69 E-value=0.59 Score=50.43 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=31.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKL 229 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 229 (1462)
++.|.|.+|+|||++|..++.....+ .-..+++++... +..++...+
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 99999999999999999987654322 223466666543 344544443
No 488
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.61 E-value=1.4 Score=53.06 Aligned_cols=52 Identities=23% Similarity=0.148 Sum_probs=38.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHH
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAF 231 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 231 (1462)
.+. ++.|.|.+|+||||+|..++...... +-..++|++... +..++...++.
T Consensus 241 ~G~--l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 241 GGE--VIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TTC--EEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCe--EEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHH
Confidence 445 89999999999999999999988532 123577877654 45566666543
No 489
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.60 E-value=1.1 Score=61.86 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=56.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CcChHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTPDHQKIQDKLAFDLGMEFGL-----NENTFQKAYRLCER 253 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~ 253 (1462)
.++.|+|++|+||||||..++...... -..++|++.....+... ++.++..... ..+..+....+...
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 399999999999999999999988532 23688999888777542 5666654321 12223333333222
Q ss_pred HHccCcEEEEEcCCccc
Q 046345 254 LKKEKKVLIILDNIWTK 270 (1462)
Q Consensus 254 l~~~k~~LlVlDdv~~~ 270 (1462)
....+.-++|+|.+...
T Consensus 457 v~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 457 ARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHTCCSEEEESCGGGC
T ss_pred HHhcCCcEEEECCHHHh
Confidence 22456679999998654
No 490
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.57 E-value=0.28 Score=56.76 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
...+++|+|++|+|||||.+.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34599999999999999999999844
No 491
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.49 E-value=0.31 Score=54.56 Aligned_cols=39 Identities=36% Similarity=0.462 Sum_probs=29.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEec
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVT 217 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 217 (1462)
+..+++|+|++|+||||++..++......+ ..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 446999999999999999999999886432 235555543
No 492
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.37 E-value=0.56 Score=52.55 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=33.2
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhccCCCeEEEEEecCCC
Q 046345 175 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKSFDKVVMAEVTQTP 220 (1462)
Q Consensus 175 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 220 (1462)
....++|+|+|-||+||||+|..++......+ ..++-|+.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 45667999999999999999999999986432 257777776443
No 493
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.28 E-value=0.26 Score=55.06 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=22.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999876
No 494
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.19 E-value=0.26 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
-.|+|+|.+|+|||||.+.+.+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998864
No 495
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.13 E-value=0.27 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
..|+|.|+.|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999887
No 496
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=88.08 E-value=1.9 Score=50.92 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcccccCCCCChhhhhHhhHHHHHHHHHHHHHhhcCCCcccccCCCCCCC
Q 046345 69 IYEGVTNWLNSVDEFSEGVAKSIIDDEDRAKKSCFKGLCPNLISRYKLSKQAATTAEAAANLVGEGNFSNVSFRPTPRST 148 (1462)
Q Consensus 69 ~~~~v~~wl~~~~~~~~~~~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~ 148 (1462)
....+..|..++.++.-. +|-.+|..+ . .....+..+..++..+.++++++....
T Consensus 161 ~~~~~~~~r~~l~~~~a~-iEa~iDf~e-d---------~~~~~~~~~~~~i~~l~~~l~~~~~~~-------------- 215 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAE-IEARIDFEE-D---------LPPLDDEAIISDIENIAAEISQLLATK-------------- 215 (462)
T ss_dssp THHHHHHHHHHHHHHHHH-HHHHTTSSS-S---------SCCCCTTTHHHHHHHHHHHHHHHTTTH--------------
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhccccc-c---------CChhhHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 456677788887777766 666665321 0 001123344556666666666554320
Q ss_pred CccccCCccccchhHHHHHHHHHHhccCCceEEEEEecCCCcHHHHHHHHHHHH
Q 046345 149 GHIQVKDYEAFDSRMKVFQDVVEAAKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 149 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.+. +. +. ... .|+|+|.+|+|||||...+.+..
T Consensus 216 ------------~~~----~~---~r-~~~-kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 216 ------------DKG----EL---LR-TGL-KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp ------------HHH----HH---HH-HCE-EEEEEECTTSSHHHHHHHHHHHH
T ss_pred ------------hhh----hh---hc-CCC-EEEEEcCCCCCHHHHHHHHhCCC
Confidence 000 01 11 122 48999999999999999999875
No 497
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.94 E-value=0.3 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
+|+|.|+.|+||||+|+.++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999876
No 498
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.89 E-value=0.31 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 046345 180 IIGVYGMGGVGKTTLVKQVAKQV 202 (1462)
Q Consensus 180 vv~I~G~~GvGKTtLa~~~~~~~ 202 (1462)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 499
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.86 E-value=0.3 Score=53.75 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHH
Q 046345 177 KLNIIGVYGMGGVGKTTLVKQVAK 200 (1462)
Q Consensus 177 ~~~vv~I~G~~GvGKTtLa~~~~~ 200 (1462)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 500
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.83 E-value=0.33 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 046345 179 NIIGVYGMGGVGKTTLVKQVAK 200 (1462)
Q Consensus 179 ~vv~I~G~~GvGKTtLa~~~~~ 200 (1462)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
Done!