BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046346
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 131/251 (52%), Gaps = 47/251 (18%)
Query: 4 IDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLV--- 60
I+G + +E +AQ ++ HI+ FI+SM+LK ++++ IP+II HGKP++L+ L ++
Sbjct: 5 INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 61 SSGNNN------------------DEEQGYVLTNASKLLLKDNPLS-------------- 88
SS N EE+ Y LT AS+LL++ + L
Sbjct: 65 SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124
Query: 89 ---QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCK 138
+L+ W +D T FG ++ P+ N FN+AMASD++L ++ ++ C
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCD 183
Query: 139 NVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198
VF+GL S+VDV FPKL+C FD P VV L S NL YVGGDMF
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFT 242
Query: 199 AISPADAVVLK 209
+I ADAV+LK
Sbjct: 243 SIPNADAVLLK 253
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 126 bits (316), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 127/251 (50%), Gaps = 47/251 (18%)
Query: 4 IDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLV--- 60
I+G + +E +AQ ++ HI+ FI+S +LK +++ IP+II HGKP++L+ L ++
Sbjct: 5 INGRKPSEIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 61 SSGNNN------------------DEEQGYVLTNASKLLLKDNPLS-------------- 88
SS N EE+ Y LT AS+LL++ + L
Sbjct: 65 SSKIGNVRRLXRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPXVECVLDPTLS 124
Query: 89 ---QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCK 138
+L+ W +D T FG ++ P+ N FN+A ASD++L ++ ++ C
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKL-INLALRDCD 183
Query: 139 NVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198
VF+GL S+VDV FPKL+C FD P VV L S NL YVGGD F
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDXFT 242
Query: 199 AISPADAVVLK 209
+I ADAV+LK
Sbjct: 243 SIPNADAVLLK 253
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 126/256 (49%), Gaps = 52/256 (20%)
Query: 4 IDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL------- 56
I+ + +E +AQ ++ +++ F++SM+LK SI++ IP+II+ HGKP+TL+ L
Sbjct: 5 INNRKPSEIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIP 64
Query: 57 -------QKLVSSGNNN------------DEEQGYVLTNASKLLLKDNPLS--------- 88
Q+L+ +N +EE+ Y LT AS+LL+K L
Sbjct: 65 STKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVL 124
Query: 89 --------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVM 133
L+ W +D T F E+ P+ N +N+A+ASD+++ M
Sbjct: 125 DPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAM 184
Query: 134 IQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVG 193
+ C VFEGL S+VDV FPKL C FD P VV L NL YVG
Sbjct: 185 -KDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGS-NNLTYVG 242
Query: 194 GDMFKAISPADAVVLK 209
GDMF ++ ADAV+LK
Sbjct: 243 GDMFISVPKADAVLLK 258
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 123/260 (47%), Gaps = 58/260 (22%)
Query: 6 GERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQ---KLVSS 62
G ++E AQIH++ H++NF++SM LK +++LGI D I+ HGKPMTL+EL KL S
Sbjct: 1 GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPS 60
Query: 63 GNN--------------------------NDEEQGYVLTNASKLLLKDNP---------- 86
N +EE Y LT SKLL+ P
Sbjct: 61 KVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGA 120
Query: 87 -------LSQQLRSWFQNDDPTPFGTEYDGD----------EPKLNNFFNEAMASDARLA 129
+ + WF D G+ E + F +AMASD+R+
Sbjct: 121 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180
Query: 130 TSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNL 189
+++Q+ K VFEGL SLVDV FP L+CT FD P VV L + NL
Sbjct: 181 -KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENL 238
Query: 190 KYVGGDMFKAISPADAVVLK 209
+VGGDMFK+I ADAV+LK
Sbjct: 239 NFVGGDMFKSIPSADAVLLK 258
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 122/258 (47%), Gaps = 58/258 (22%)
Query: 8 RDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQ---KLVSSGN 64
++E AQIH++ H++NF++SM LK +++LGI D I+ HGKPMTL+EL KL S
Sbjct: 2 EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKV 61
Query: 65 N--------------------------NDEEQGYVLTNASKLLLKDNP------------ 86
N +EE Y LT SKLL+ P
Sbjct: 62 NILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALH 121
Query: 87 -----LSQQLRSWFQNDDPTPFGTEYDGD----------EPKLNNFFNEAMASDARLATS 131
+ + WF D G+ E + F +AMASD+R+
Sbjct: 122 PSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-K 180
Query: 132 VMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKY 191
+++Q+ K VFEGL SLVDV FP L+CT FD P VV L + NL +
Sbjct: 181 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNF 239
Query: 192 VGGDMFKAISPADAVVLK 209
VGGDMFK+I ADAV+LK
Sbjct: 240 VGGDMFKSIPSADAVLLK 257
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 121/256 (47%), Gaps = 58/256 (22%)
Query: 10 TEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQ---KLVSSGNN- 65
+E AQIH++ H++NF++SM LK +++LGI D I+ HGKPMTL+EL KL S N
Sbjct: 1 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNI 60
Query: 66 -------------------------NDEEQGYVLTNASKLLLKDNP-------------- 86
+EE Y LT SKLL+ P
Sbjct: 61 LHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPS 120
Query: 87 ---LSQQLRSWFQNDDPTPFGTEYDGD----------EPKLNNFFNEAMASDARLATSVM 133
+ + WF D G+ E + F +AMASD+R+ ++
Sbjct: 121 SLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-KLV 179
Query: 134 IQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVG 193
+Q+ K VFEGL SLVDV FP L+CT FD P VV L + NL +VG
Sbjct: 180 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVG 238
Query: 194 GDMFKAISPADAVVLK 209
GDMFK+I ADAV+LK
Sbjct: 239 GDMFKSIPSADAVLLK 254
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 98/234 (41%), Gaps = 56/234 (23%)
Query: 30 MTLKCSIQLGIPDIINKHG--------------------KPMTLNELQKL---------- 59
M LK +++L + +II K G P+ L+ + +L
Sbjct: 34 MILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCS 93
Query: 60 VSSGNNNDEEQGYVLTNASKLLLKD---------NPLSQQ---LRSWFQNDDPT-----P 102
V + + ++ Y L +K L+K+ N ++Q + SW+ D P
Sbjct: 94 VRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIP 153
Query: 103 F-------GTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXX 155
F EY G +P+ N FN+ M SD T I + FEGL SLVDV
Sbjct: 154 FNKAYGMTAFEYHGTDPRFNKVFNKGM-SDHSTITMKKILETYTGFEGLKSLVDVGGGTG 212
Query: 156 XXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
+P ++ FDLPHV+ S +++VGGDMF +I ADAV +K
Sbjct: 213 AVINTIVSKYPTIKGINFDLPHVIEDAPS-YPGVEHVGGDMFVSIPKADAVFMK 265
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 165
EY G +P+ N FNE M + + + T +++ + FEGL +LVDV +
Sbjct: 165 EYHGTDPRFNRVFNEGMKNHSIIITKKLLE-LYHGFEGLGTLVDVGGGVGATVAAIAAHY 223
Query: 166 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
P ++ FDLPHV++ + +VGGDMFK + D +++K
Sbjct: 224 PTIKGVNFDLPHVISE-APQFPGVTHVGGDMFKEVPSGDTILMK 266
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 165
+Y G + ++N FN+ M+S++ + T I + N FEGL ++VDV +
Sbjct: 167 DYHGTDHRINKVFNKGMSSNSTI-TMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY 225
Query: 166 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
P + FDLPHV+ + ++++GGDMF + DA+ +K
Sbjct: 226 PSINAINFDLPHVIQDAPA-FSGVEHLGGDMFDGVPKGDAIFIK 268
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 165
E+ G + K+N FN++M M++ FEG+++LVDV +
Sbjct: 173 EFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTG-FEGISTLVDVGGGSGRNLELIISKY 231
Query: 166 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
P ++ FDLP V+ L +++VGGDMF ++ DA++LK
Sbjct: 232 PLIKGINFDLPQVIEN-APPLSGIEHVGGDMFASVPQGDAMILK 274
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 165
E+ G + K N FN++ D + FEG+++LVDV +
Sbjct: 173 EFXGKDKKXNQIFNKSXV-DVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKY 231
Query: 166 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
P ++ FDLP V+ L +++VGGD F ++ DA +LK
Sbjct: 232 PLIKGINFDLPQVIEN-APPLSGIEHVGGDXFASVPQGDAXILK 274
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 87 LSQQLRSW--FQNDDPTPFGTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGL 144
LSQ +R F+ P P T D N +F E S+A+ A +++++ K +G+
Sbjct: 140 LSQAVRGQKNFKGQVPYPPVTRED------NLYFEEIHRSNAKFAIQLLLEEAK--LDGV 191
Query: 145 NSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVV-----NGLESDLVN-LKYVGGDMFK 198
++DV FP+L+ T +LP + N E + + ++ + D++K
Sbjct: 192 KKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK 251
Query: 199 AISP-ADAVVL 208
P ADAV+
Sbjct: 252 ESYPEADAVLF 262
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 15 AQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKL-VSSGNNNDEEQGYV 73
A + N+IF NS + I + I K G L+K+ VSS N N + YV
Sbjct: 123 ATTEIGNYIF--YNSSVKRIVIPKSVTTI--KDGIGYKAENLEKIEVSSNNKNYVAENYV 178
Query: 74 LTNASKLLLKDNPLSQ 89
L N +K +L+ P ++
Sbjct: 179 LYNKNKTILESYPAAK 194
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 6 GERDTEPLEAQIH-------VWNHIFNFINSMTLKCS-IQLG-IPDIINKHGKPMTLNEL 56
GER+ P+EA++ +W + N++ + + +G +P ++ P++ L
Sbjct: 79 GEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTL 138
Query: 57 QKLVSSGNNNDEEQGYVLTNASKLLL 82
KL+ G + + GY + N S+ ++
Sbjct: 139 DKLIEIGEDPKDPGGYFIVNGSERVI 164
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 27.7 bits (60), Expect = 4.5, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 6 GERDTEPLEAQIH-------VWNHIFNFINSMTLKCS-IQLG-IPDIINKHGKPMTLNEL 56
GER+ P+EA++ +W + N++ + + +G +P ++ P++ L
Sbjct: 76 GEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTL 135
Query: 57 QKLVSSGNNNDEEQGYVLTNASKLLL 82
KL+ G + + GY + N S+ ++
Sbjct: 136 DKLIEIGEDPKDPGGYFIVNGSERVI 161
>pdb|3N6S|A Chain A, Crystal Structure Of Human Mitochondrial Mterf In Complex
With A 15- Mer Dna Encompassing The Trnaleu(Uur) Binding
Sequence
Length = 353
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 8 RDTEPLEAQIHVWNHIFNFINS---MTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGN 64
+ T+ ++A I FN +NS + L C I D+ N + + N +KL S G
Sbjct: 195 QSTKRVKANIEFLRSTFN-LNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC 253
Query: 65 NNDEEQGYVLTNASKLLLKDNPLSQQL 91
+E Q +VL+ + L + + ++
Sbjct: 254 TEEEVQKFVLSYPDVIFLAEKKFNDKI 280
>pdb|3N7Q|A Chain A, Crystal Structure Of Human Mitochondrial Mterf Fragment
(Aa 99-399) In Complex With A 12-Mer Dna Encompassing
The Trnaleu(Uur) Binding Sequence
Length = 310
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 8 RDTEPLEAQIHVWNHIFNFINS---MTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGN 64
+ T+ ++A I FN +NS + L C I D+ N + + N +KL S G
Sbjct: 152 QSTKRVKANIEFLRSTFN-LNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC 210
Query: 65 NNDEEQGYVLTNASKLLLKDNPLSQQL 91
+E Q +VL+ + L + + ++
Sbjct: 211 TEEEVQKFVLSYPDVIFLAEKKFNDKI 237
>pdb|3MVA|O Chain O, Crystal Structure Of Human Mterf1 Bound To The Termination
Sequence
Length = 343
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 8 RDTEPLEAQIHVWNHIFNFINS---MTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGN 64
+ T+ ++A I FN +NS + L C I D+ N + + N +KL S G
Sbjct: 194 QSTKRVKANIEFLRSTFN-LNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC 252
Query: 65 NNDEEQGYVLTNASKLLLKDNPLSQQL 91
+E Q +VL+ + L + + ++
Sbjct: 253 TEEEVQKFVLSYPDVIFLAEKKFNDKI 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,988,505
Number of Sequences: 62578
Number of extensions: 227427
Number of successful extensions: 563
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 22
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)