Query 046346
Match_columns 209
No_of_seqs 146 out of 1475
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 11:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 99.9 4.6E-27 1E-31 190.6 11.9 139 67-209 1-165 (241)
2 TIGR02716 C20_methyl_CrtF C-20 99.9 4E-26 8.6E-31 191.3 17.8 175 28-209 3-222 (306)
3 KOG3178 Hydroxyindole-O-methyl 99.9 4.7E-22 1E-26 164.9 15.8 193 12-209 3-243 (342)
4 PF12847 Methyltransf_18: Meth 99.2 1.3E-10 2.9E-15 82.7 8.0 66 144-209 2-77 (112)
5 PRK14103 trans-aconitate 2-met 98.9 1E-08 2.2E-13 83.8 9.7 74 131-208 19-95 (255)
6 PRK08287 cobalt-precorrin-6Y C 98.9 6.7E-09 1.4E-13 81.0 8.2 73 134-208 24-103 (187)
7 COG2226 UbiE Methylase involve 98.9 9.2E-09 2E-13 82.9 8.5 67 143-209 51-126 (238)
8 PRK01683 trans-aconitate 2-met 98.9 2.4E-08 5.3E-13 81.6 10.7 77 130-208 20-99 (258)
9 PF13847 Methyltransf_31: Meth 98.9 1E-08 2.2E-13 77.3 7.8 66 143-208 3-79 (152)
10 COG4106 Tam Trans-aconitate me 98.8 8.2E-09 1.8E-13 81.0 6.8 75 131-207 20-97 (257)
11 PRK15451 tRNA cmo(5)U34 methyl 98.8 2.5E-08 5.5E-13 81.2 9.8 67 142-208 55-131 (247)
12 PRK06922 hypothetical protein; 98.8 2.1E-08 4.6E-13 90.6 10.1 101 106-208 381-493 (677)
13 TIGR03587 Pse_Me-ase pseudamin 98.8 1.5E-08 3.3E-13 80.2 7.6 67 142-208 42-111 (204)
14 PF05175 MTS: Methyltransferas 98.8 2.6E-08 5.6E-13 76.6 8.4 66 143-208 31-104 (170)
15 TIGR00740 methyltransferase, p 98.8 4.6E-08 1E-12 79.2 9.4 67 142-208 52-128 (239)
16 PRK15001 SAM-dependent 23S rib 98.7 5.1E-08 1.1E-12 83.8 8.8 75 132-208 219-304 (378)
17 TIGR03533 L3_gln_methyl protei 98.7 4.5E-08 9.7E-13 81.4 7.9 66 143-208 121-195 (284)
18 COG2890 HemK Methylase of poly 98.7 3.2E-08 6.9E-13 82.1 6.7 63 146-208 113-182 (280)
19 TIGR02752 MenG_heptapren 2-hep 98.7 9.3E-08 2E-12 76.8 9.1 75 132-208 36-120 (231)
20 PRK11805 N5-glutamine S-adenos 98.7 4.5E-08 9.7E-13 82.2 7.3 64 145-208 135-207 (307)
21 PF01209 Ubie_methyltran: ubiE 98.7 3.4E-08 7.4E-13 79.8 6.1 68 141-208 45-122 (233)
22 PLN02233 ubiquinone biosynthes 98.7 2E-07 4.3E-12 76.6 10.4 68 141-208 71-151 (261)
23 TIGR02469 CbiT precorrin-6Y C5 98.7 2.5E-07 5.5E-12 66.5 9.6 74 133-208 11-94 (124)
24 PRK04457 spermidine synthase; 98.7 6.4E-08 1.4E-12 79.6 6.9 67 142-208 65-142 (262)
25 TIGR00536 hemK_fam HemK family 98.7 1.6E-07 3.5E-12 78.1 9.2 64 145-208 116-188 (284)
26 COG2242 CobL Precorrin-6B meth 98.6 1.9E-07 4E-12 72.1 8.6 73 134-208 27-108 (187)
27 PRK00107 gidB 16S rRNA methylt 98.6 3E-07 6.6E-12 71.8 9.9 66 143-208 45-118 (187)
28 PTZ00098 phosphoethanolamine N 98.6 1.7E-07 3.6E-12 77.1 8.8 76 130-208 41-123 (263)
29 PLN02244 tocopherol O-methyltr 98.6 2.3E-07 5E-12 79.0 9.9 66 142-208 117-192 (340)
30 TIGR02072 BioC biotin biosynth 98.6 1.6E-07 3.5E-12 75.2 8.4 66 143-208 34-104 (240)
31 PF13649 Methyltransf_25: Meth 98.6 6.5E-08 1.4E-12 67.8 5.2 62 147-208 1-73 (101)
32 TIGR00138 gidB 16S rRNA methyl 98.6 1.2E-07 2.6E-12 73.8 7.1 65 144-208 43-115 (181)
33 PRK10258 biotin biosynthesis p 98.6 4.1E-07 8.9E-12 74.1 10.6 91 114-208 9-109 (251)
34 smart00828 PKS_MT Methyltransf 98.6 1.6E-07 3.5E-12 75.1 7.8 64 145-208 1-73 (224)
35 PRK14966 unknown domain/N5-glu 98.6 2.1E-07 4.5E-12 80.6 8.6 66 143-208 251-325 (423)
36 PRK05785 hypothetical protein; 98.6 3.4E-07 7.4E-12 73.7 9.3 62 143-208 51-116 (226)
37 PRK13944 protein-L-isoaspartat 98.6 4.8E-07 1E-11 71.7 9.9 75 132-208 63-148 (205)
38 PRK11207 tellurite resistance 98.6 3E-07 6.6E-12 72.3 8.4 74 131-208 20-101 (197)
39 TIGR00080 pimt protein-L-isoas 98.6 5.9E-07 1.3E-11 71.6 9.9 76 131-208 67-152 (215)
40 PRK11036 putative S-adenosyl-L 98.6 2.6E-07 5.6E-12 75.6 7.9 65 142-208 43-118 (255)
41 PRK13942 protein-L-isoaspartat 98.6 6.4E-07 1.4E-11 71.4 10.0 77 130-208 65-151 (212)
42 TIGR02021 BchM-ChlM magnesium 98.6 9.6E-07 2.1E-11 70.5 11.1 92 115-208 27-125 (219)
43 KOG1540 Ubiquinone biosynthesi 98.6 5.9E-07 1.3E-11 72.3 9.5 65 144-208 101-183 (296)
44 PF08241 Methyltransf_11: Meth 98.5 3.6E-07 7.9E-12 62.3 7.3 60 148-208 1-66 (95)
45 PRK11088 rrmA 23S rRNA methylt 98.5 4.9E-07 1.1E-11 74.6 9.3 65 143-207 85-156 (272)
46 PRK01544 bifunctional N5-gluta 98.5 2.1E-07 4.6E-12 83.2 7.2 65 144-208 139-212 (506)
47 PRK09489 rsmC 16S ribosomal RN 98.5 5.2E-07 1.1E-11 76.9 9.3 74 133-208 188-267 (342)
48 TIGR03534 RF_mod_PrmC protein- 98.5 5.7E-07 1.2E-11 72.9 9.1 66 143-208 87-160 (251)
49 PRK08317 hypothetical protein; 98.5 7.7E-07 1.7E-11 71.1 9.8 75 132-208 10-93 (241)
50 PLN02336 phosphoethanolamine N 98.5 6.5E-07 1.4E-11 79.5 9.2 74 132-208 257-338 (475)
51 PLN03075 nicotianamine synthas 98.5 6.9E-07 1.5E-11 74.2 8.6 66 143-208 123-201 (296)
52 COG2813 RsmC 16S RNA G1207 met 98.5 8.3E-07 1.8E-11 73.4 8.8 76 131-208 148-230 (300)
53 PRK00216 ubiE ubiquinone/menaq 98.5 2.3E-06 5E-11 68.6 11.2 67 142-208 50-127 (239)
54 PRK09328 N5-glutamine S-adenos 98.5 1.1E-06 2.4E-11 72.3 9.4 67 142-208 107-181 (275)
55 PF08242 Methyltransf_12: Meth 98.5 4.2E-08 9E-13 68.4 0.8 61 148-208 1-72 (99)
56 COG4123 Predicted O-methyltran 98.5 3.3E-07 7.2E-12 74.1 5.9 68 141-208 42-121 (248)
57 smart00650 rADc Ribosomal RNA 98.5 1E-06 2.2E-11 67.6 8.3 74 131-208 3-83 (169)
58 PRK06202 hypothetical protein; 98.4 2E-06 4.3E-11 69.3 10.3 67 142-208 59-135 (232)
59 TIGR00091 tRNA (guanine-N(7)-) 98.4 4.8E-07 1E-11 71.0 6.5 66 143-208 16-93 (194)
60 PRK00121 trmB tRNA (guanine-N( 98.4 6E-07 1.3E-11 71.0 7.0 66 143-208 40-117 (202)
61 TIGR00537 hemK_rel_arch HemK-r 98.4 1E-06 2.2E-11 68.1 8.2 64 143-208 19-88 (179)
62 PF13659 Methyltransf_26: Meth 98.4 5.6E-07 1.2E-11 64.3 6.0 63 145-208 2-76 (117)
63 PRK07402 precorrin-6B methylas 98.4 2E-06 4.3E-11 67.5 9.4 74 133-208 32-115 (196)
64 PRK14896 ksgA 16S ribosomal RN 98.4 1.4E-06 2.9E-11 71.5 8.8 75 129-207 17-96 (258)
65 PF05401 NodS: Nodulation prot 98.4 6.5E-07 1.4E-11 69.7 6.2 70 136-209 38-113 (201)
66 PHA03411 putative methyltransf 98.4 9.4E-07 2E-11 72.6 7.3 65 144-208 65-132 (279)
67 PRK00274 ksgA 16S ribosomal RN 98.4 1.4E-06 3E-11 72.0 8.0 64 131-198 32-98 (272)
68 PRK14121 tRNA (guanine-N(7)-)- 98.4 1.7E-06 3.6E-11 74.5 8.5 66 143-208 122-198 (390)
69 PLN02490 MPBQ/MSBQ methyltrans 98.4 1.7E-06 3.7E-11 73.5 8.5 66 143-208 113-184 (340)
70 TIGR03704 PrmC_rel_meth putati 98.4 9.3E-07 2E-11 72.2 6.7 65 144-208 87-159 (251)
71 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 2.8E-06 6E-11 67.4 9.0 75 132-208 30-112 (223)
72 COG2230 Cfa Cyclopropane fatty 98.4 3.1E-06 6.8E-11 69.7 9.3 76 129-207 60-142 (283)
73 TIGR00477 tehB tellurite resis 98.3 2.2E-06 4.8E-11 67.3 7.9 74 131-208 20-100 (195)
74 smart00138 MeTrc Methyltransfe 98.3 4.1E-06 8.9E-11 68.9 9.6 68 142-209 98-210 (264)
75 PRK07580 Mg-protoporphyrin IX 98.3 4.7E-06 1E-10 66.7 9.2 65 142-208 62-133 (230)
76 PRK15068 tRNA mo(5)U34 methylt 98.3 3.3E-06 7.2E-11 71.4 8.5 65 143-208 122-195 (322)
77 KOG1271 Methyltransferases [Ge 98.3 3.1E-06 6.6E-11 65.0 7.3 66 143-208 67-142 (227)
78 PRK00377 cbiT cobalt-precorrin 98.3 4.7E-06 1E-10 65.5 8.5 68 141-208 38-117 (198)
79 PHA03412 putative methyltransf 98.3 2.3E-06 4.9E-11 68.8 6.7 65 144-208 50-120 (241)
80 PF07021 MetW: Methionine bios 98.3 1.7E-06 3.6E-11 67.2 5.8 65 142-209 12-82 (193)
81 PRK00312 pcm protein-L-isoaspa 98.3 8.5E-06 1.9E-10 64.7 9.6 73 132-208 69-150 (212)
82 PF02353 CMAS: Mycolic acid cy 98.2 3.9E-06 8.5E-11 69.3 7.7 74 130-207 51-132 (273)
83 PLN02366 spermidine synthase 98.2 3.6E-06 7.8E-11 70.7 7.0 67 141-208 89-171 (308)
84 PRK12335 tellurite resistance 98.2 6.3E-06 1.4E-10 68.6 8.4 65 142-208 119-190 (287)
85 TIGR00755 ksgA dimethyladenosi 98.2 6.4E-06 1.4E-10 67.3 8.3 71 130-204 18-93 (253)
86 PRK11873 arsM arsenite S-adeno 98.2 5.8E-06 1.2E-10 68.1 7.8 68 141-208 75-152 (272)
87 PLN02396 hexaprenyldihydroxybe 98.2 3.7E-06 8E-11 71.0 6.6 63 144-208 132-204 (322)
88 PLN02672 methionine S-methyltr 98.2 3E-06 6.6E-11 81.1 6.7 64 144-207 119-208 (1082)
89 PRK14968 putative methyltransf 98.2 8.2E-06 1.8E-10 63.1 8.1 65 142-208 22-96 (188)
90 PRK14967 putative methyltransf 98.2 6.1E-06 1.3E-10 66.1 7.5 67 141-208 34-107 (223)
91 PTZ00338 dimethyladenosine tra 98.2 8.6E-06 1.9E-10 68.0 8.3 74 130-207 25-106 (294)
92 PRK13943 protein-L-isoaspartat 98.2 1.2E-05 2.6E-10 67.9 9.3 74 133-208 72-155 (322)
93 TIGR02081 metW methionine bios 98.2 5.7E-06 1.2E-10 64.8 6.8 63 143-208 13-81 (194)
94 PRK01581 speE spermidine synth 98.2 5E-06 1.1E-10 70.9 6.5 68 141-208 148-232 (374)
95 PLN02336 phosphoethanolamine N 98.1 9.4E-06 2E-10 72.1 8.6 75 130-208 26-109 (475)
96 PRK00811 spermidine synthase; 98.1 5.2E-06 1.1E-10 69.0 6.2 67 142-208 75-156 (283)
97 PF01135 PCMT: Protein-L-isoas 98.1 1.1E-05 2.4E-10 64.1 7.5 77 130-208 61-147 (209)
98 PRK04266 fibrillarin; Provisio 98.1 1.4E-05 3E-10 64.3 8.1 68 141-208 70-147 (226)
99 TIGR00452 methyltransferase, p 98.1 1.7E-05 3.6E-10 66.9 8.7 74 132-208 112-194 (314)
100 TIGR00406 prmA ribosomal prote 98.1 1.7E-05 3.7E-10 66.1 8.7 65 143-208 159-231 (288)
101 PRK11705 cyclopropane fatty ac 98.1 2.5E-05 5.4E-10 67.7 9.8 73 131-207 157-233 (383)
102 PF03848 TehB: Tellurite resis 98.1 2.1E-05 4.6E-10 61.5 8.4 73 131-207 20-99 (192)
103 TIGR03840 TMPT_Se_Te thiopurin 98.1 2.3E-05 5E-10 62.5 8.7 64 142-207 33-118 (213)
104 PRK13168 rumA 23S rRNA m(5)U19 98.1 1E-05 2.2E-10 71.4 6.8 65 142-208 296-373 (443)
105 KOG2904 Predicted methyltransf 98.0 2.5E-05 5.5E-10 63.6 8.2 66 142-207 147-227 (328)
106 TIGR03438 probable methyltrans 98.0 2.2E-05 4.8E-10 65.8 7.9 56 143-198 63-126 (301)
107 PRK03612 spermidine synthase; 98.0 1.3E-05 2.7E-10 72.2 6.8 66 142-208 296-379 (521)
108 PRK11188 rrmJ 23S rRNA methylt 98.0 3.8E-05 8.2E-10 61.1 8.8 62 141-207 49-122 (209)
109 PLN02585 magnesium protoporphy 98.0 1.9E-05 4.2E-10 66.5 7.4 63 143-208 144-218 (315)
110 PRK04148 hypothetical protein; 98.0 2.9E-05 6.3E-10 57.1 7.4 70 132-207 7-82 (134)
111 COG2263 Predicted RNA methylas 98.0 2.4E-05 5.1E-10 60.5 7.1 65 143-208 45-114 (198)
112 PF06325 PrmA: Ribosomal prote 98.0 2.3E-05 4.9E-10 65.4 7.4 62 142-207 160-230 (295)
113 PRK00517 prmA ribosomal protei 98.0 2.7E-05 5.7E-10 63.6 7.5 60 142-207 118-184 (250)
114 PLN02781 Probable caffeoyl-CoA 98.0 4.8E-05 1E-09 61.5 8.7 68 141-208 66-150 (234)
115 PRK03522 rumB 23S rRNA methylu 98.0 2.2E-05 4.7E-10 66.3 6.8 64 143-208 173-246 (315)
116 PRK00050 16S rRNA m(4)C1402 me 97.9 2.9E-05 6.3E-10 64.7 7.0 76 131-208 9-96 (296)
117 cd02440 AdoMet_MTases S-adenos 97.9 3.6E-05 7.8E-10 52.3 6.2 62 146-208 1-72 (107)
118 PF02390 Methyltransf_4: Putat 97.9 3.9E-05 8.4E-10 60.4 6.9 54 145-198 19-78 (195)
119 PRK10901 16S rRNA methyltransf 97.9 3.9E-05 8.4E-10 67.4 7.6 74 133-208 236-319 (427)
120 PRK13255 thiopurine S-methyltr 97.9 7.8E-05 1.7E-09 59.7 8.7 64 142-207 36-121 (218)
121 PRK14902 16S rRNA methyltransf 97.9 3.5E-05 7.6E-10 68.0 7.3 68 141-208 248-326 (444)
122 KOG0820 Ribosomal RNA adenine 97.9 8.3E-05 1.8E-09 60.6 8.3 75 129-207 46-128 (315)
123 TIGR00417 speE spermidine synt 97.8 4.5E-05 9.8E-10 63.0 6.7 67 142-208 71-151 (270)
124 COG2518 Pcm Protein-L-isoaspar 97.8 0.00015 3.2E-09 57.3 9.1 74 131-208 62-144 (209)
125 COG2264 PrmA Ribosomal protein 97.8 3.9E-05 8.5E-10 63.8 6.1 51 133-184 152-203 (300)
126 TIGR00438 rrmJ cell division p 97.8 5.9E-05 1.3E-09 58.8 6.8 63 141-208 30-104 (188)
127 PRK10909 rsmD 16S rRNA m(2)G96 97.8 3.8E-05 8.2E-10 60.6 5.5 65 143-208 53-127 (199)
128 PLN02823 spermine synthase 97.8 5.4E-05 1.2E-09 64.4 6.6 67 142-208 102-182 (336)
129 COG0421 SpeE Spermidine syntha 97.8 5.9E-05 1.3E-09 62.5 6.6 68 141-208 74-155 (282)
130 PRK11727 23S rRNA mA1618 methy 97.8 7.1E-05 1.5E-09 63.2 7.0 66 143-208 114-195 (321)
131 KOG1270 Methyltransferases [Co 97.8 2.6E-05 5.7E-10 63.2 4.1 62 145-208 91-164 (282)
132 PF13489 Methyltransf_23: Meth 97.7 0.00013 2.8E-09 54.6 6.8 39 141-181 20-59 (161)
133 TIGR02085 meth_trns_rumB 23S r 97.7 7.8E-05 1.7E-09 64.4 6.2 64 143-208 233-306 (374)
134 PF08100 Dimerisation: Dimeris 97.7 2.6E-05 5.6E-10 47.6 2.1 29 30-58 1-30 (51)
135 PRK05134 bifunctional 3-demeth 97.7 0.00025 5.4E-09 56.9 8.4 64 143-208 48-120 (233)
136 TIGR00479 rumA 23S rRNA (uraci 97.7 7.6E-05 1.6E-09 65.6 5.7 66 141-208 290-368 (431)
137 TIGR01177 conserved hypothetic 97.7 0.00028 6E-09 59.9 8.7 66 141-208 180-254 (329)
138 PF01596 Methyltransf_3: O-met 97.6 6.6E-05 1.4E-09 59.5 4.5 68 141-208 43-127 (205)
139 COG2227 UbiG 2-polyprenyl-3-me 97.6 5.9E-05 1.3E-09 60.5 4.0 63 143-207 59-129 (243)
140 KOG1499 Protein arginine N-met 97.6 0.00012 2.7E-09 61.6 6.1 64 143-207 60-132 (346)
141 PF09445 Methyltransf_15: RNA 97.6 6.6E-05 1.4E-09 57.2 3.9 63 145-209 1-76 (163)
142 PTZ00146 fibrillarin; Provisio 97.6 0.0003 6.5E-09 58.5 7.9 67 141-208 130-208 (293)
143 KOG1541 Predicted protein carb 97.6 8E-05 1.7E-09 59.0 4.0 73 131-207 38-117 (270)
144 PRK14904 16S rRNA methyltransf 97.5 0.00027 5.8E-09 62.5 7.2 67 142-208 249-324 (445)
145 PF05724 TPMT: Thiopurine S-me 97.5 0.00021 4.5E-09 57.2 5.9 65 141-207 35-121 (218)
146 TIGR01983 UbiG ubiquinone bios 97.5 0.00028 6E-09 56.2 6.7 64 143-208 45-118 (224)
147 TIGR00563 rsmB ribosomal RNA s 97.5 0.00024 5.2E-09 62.4 6.4 76 131-208 228-315 (426)
148 TIGR00095 RNA methyltransferas 97.5 0.00017 3.6E-09 56.5 4.6 65 143-208 49-127 (189)
149 PF08123 DOT1: Histone methyla 97.5 0.00039 8.5E-09 55.1 6.6 76 131-208 32-128 (205)
150 KOG1500 Protein arginine N-met 97.5 0.00036 7.8E-09 58.6 6.5 63 144-207 178-248 (517)
151 PRK00536 speE spermidine synth 97.4 0.0004 8.7E-09 57.0 6.7 64 141-208 70-145 (262)
152 PLN02476 O-methyltransferase 97.4 0.00041 8.9E-09 57.4 6.8 68 141-208 116-200 (278)
153 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.00027 5.7E-09 65.9 6.2 65 143-208 538-614 (702)
154 KOG2899 Predicted methyltransf 97.4 0.00021 4.4E-09 57.5 4.5 54 131-184 46-100 (288)
155 TIGR00478 tly hemolysin TlyA f 97.4 0.0011 2.5E-08 53.3 8.6 49 130-180 63-112 (228)
156 PRK14903 16S rRNA methyltransf 97.4 0.00046 1E-08 60.7 6.9 68 141-208 235-313 (431)
157 TIGR02143 trmA_only tRNA (urac 97.4 0.00028 6E-09 60.5 5.4 52 145-198 199-256 (353)
158 PF01564 Spermine_synth: Sperm 97.4 0.00028 6.1E-09 57.5 5.0 67 142-208 75-156 (246)
159 COG2519 GCD14 tRNA(1-methylade 97.4 0.0013 2.8E-08 53.3 8.6 87 120-208 69-169 (256)
160 COG0220 Predicted S-adenosylme 97.4 0.00067 1.5E-08 54.6 7.0 55 144-198 49-109 (227)
161 PRK15128 23S rRNA m(5)C1962 me 97.4 0.00035 7.6E-09 60.8 5.8 65 143-208 220-299 (396)
162 PRK13256 thiopurine S-methyltr 97.4 0.0014 2.9E-08 52.8 8.6 64 142-207 42-129 (226)
163 PRK14901 16S rRNA methyltransf 97.4 0.00058 1.3E-08 60.2 7.1 68 141-208 250-331 (434)
164 PF05185 PRMT5: PRMT5 arginine 97.3 0.0015 3.2E-08 57.8 8.9 65 143-207 186-263 (448)
165 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00037 8E-09 60.0 4.9 52 145-198 208-265 (362)
166 TIGR00446 nop2p NOL1/NOP2/sun 97.2 0.001 2.2E-08 54.8 6.5 67 142-208 70-146 (264)
167 PF12147 Methyltransf_20: Puta 97.2 0.0018 3.9E-08 53.6 7.6 68 142-209 134-216 (311)
168 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0014 3.1E-08 53.8 7.2 66 129-198 18-87 (262)
169 TIGR01444 fkbM_fam methyltrans 97.1 0.0012 2.7E-08 48.6 6.0 52 146-197 1-58 (143)
170 PF10294 Methyltransf_16: Puta 97.1 0.0012 2.5E-08 50.9 5.8 68 141-208 43-125 (173)
171 PF13679 Methyltransf_32: Meth 97.1 0.001 2.2E-08 49.5 5.3 58 141-198 23-93 (141)
172 COG0030 KsgA Dimethyladenosine 97.1 0.0032 7E-08 51.5 8.5 69 130-201 19-91 (259)
173 COG4976 Predicted methyltransf 97.0 0.00098 2.1E-08 53.3 4.6 67 114-184 94-165 (287)
174 KOG3420 Predicted RNA methylas 97.0 0.00072 1.6E-08 50.3 3.4 63 144-208 49-120 (185)
175 PF04816 DUF633: Family of unk 97.0 0.0018 3.9E-08 51.3 5.7 62 147-208 1-72 (205)
176 PLN02589 caffeoyl-CoA O-methyl 96.9 0.0028 6.2E-08 51.6 6.7 68 141-208 77-162 (247)
177 COG4122 Predicted O-methyltran 96.9 0.0031 6.8E-08 50.3 6.6 68 141-208 57-138 (219)
178 PF01170 UPF0020: Putative RNA 96.9 0.0039 8.4E-08 48.3 6.7 67 141-207 26-111 (179)
179 PRK01544 bifunctional N5-gluta 96.8 0.0028 6E-08 57.0 6.0 54 143-196 347-406 (506)
180 PRK11760 putative 23S rRNA C24 96.7 0.007 1.5E-07 51.4 7.4 63 142-207 210-275 (357)
181 PF08704 GCD14: tRNA methyltra 96.7 0.014 3E-07 47.6 8.8 90 117-208 12-119 (247)
182 TIGR00006 S-adenosyl-methyltra 96.7 0.011 2.4E-07 49.6 8.4 76 131-208 10-98 (305)
183 PRK04338 N(2),N(2)-dimethylgua 96.6 0.0043 9.3E-08 53.8 5.9 65 144-208 58-131 (382)
184 COG4262 Predicted spermidine s 96.6 0.0062 1.4E-07 51.9 6.5 67 141-208 287-371 (508)
185 KOG3191 Predicted N6-DNA-methy 96.5 0.0072 1.6E-07 46.7 5.9 65 144-208 44-116 (209)
186 KOG3010 Methyltransferase [Gen 96.5 0.0043 9.3E-08 50.0 4.8 41 142-184 32-73 (261)
187 COG0293 FtsJ 23S rRNA methylas 96.4 0.014 3.1E-07 46.0 7.0 67 126-198 29-96 (205)
188 PF07091 FmrO: Ribosomal RNA m 96.4 0.011 2.4E-07 47.9 6.6 66 143-208 105-177 (251)
189 COG3963 Phospholipid N-methylt 96.4 0.014 3E-07 44.6 6.5 79 127-207 34-122 (194)
190 PF08003 Methyltransf_9: Prote 96.3 0.006 1.3E-07 50.9 4.7 42 131-175 105-146 (315)
191 PF02475 Met_10: Met-10+ like- 96.3 0.0099 2.1E-07 46.9 5.6 68 141-208 99-175 (200)
192 KOG2361 Predicted methyltransf 96.3 0.0065 1.4E-07 48.9 4.4 68 131-198 55-133 (264)
193 PRK11783 rlmL 23S rRNA m(2)G24 96.2 0.022 4.8E-07 53.3 8.3 76 131-208 179-309 (702)
194 PF06080 DUF938: Protein of un 96.2 0.0074 1.6E-07 47.6 4.2 43 134-176 15-58 (204)
195 KOG1661 Protein-L-isoaspartate 96.1 0.022 4.7E-07 45.1 6.4 75 133-207 72-167 (237)
196 PF05148 Methyltransf_8: Hypot 96.1 0.018 3.9E-07 45.6 6.0 90 106-208 32-128 (219)
197 PF01795 Methyltransf_5: MraW 96.0 0.029 6.3E-07 47.1 7.1 67 130-198 9-80 (310)
198 PF02527 GidB: rRNA small subu 96.0 0.03 6.4E-07 43.6 6.7 64 146-209 51-122 (184)
199 PF07757 AdoMet_MTase: Predict 95.9 0.012 2.6E-07 41.5 3.9 31 143-175 58-88 (112)
200 COG2384 Predicted SAM-dependen 95.9 0.026 5.6E-07 44.9 6.1 66 143-208 16-91 (226)
201 PF09243 Rsm22: Mitochondrial 95.8 0.029 6.4E-07 46.4 6.6 42 143-184 33-76 (274)
202 PF01728 FtsJ: FtsJ-like methy 95.4 0.025 5.3E-07 43.6 4.3 48 130-178 9-59 (181)
203 COG0357 GidB Predicted S-adeno 95.3 0.085 1.8E-06 42.1 7.1 65 144-208 68-141 (215)
204 KOG4589 Cell division protein 95.2 0.08 1.7E-06 41.3 6.5 38 141-178 67-105 (232)
205 KOG2730 Methylase [General fun 95.1 0.014 3E-07 46.5 2.2 54 143-198 94-154 (263)
206 KOG3045 Predicted RNA methylas 95.1 0.11 2.3E-06 42.6 7.2 87 107-208 141-234 (325)
207 COG0275 Predicted S-adenosylme 94.8 0.13 2.8E-06 43.0 7.1 66 131-198 13-84 (314)
208 PF01739 CheR: CheR methyltran 94.8 0.15 3.3E-06 40.1 7.2 67 143-209 31-143 (196)
209 PF03602 Cons_hypoth95: Conser 94.7 0.036 7.8E-07 43.1 3.6 65 143-208 42-120 (183)
210 COG1352 CheR Methylase of chem 94.5 0.47 1E-05 39.2 9.7 67 143-209 96-209 (268)
211 KOG3115 Methyltransferase-like 94.5 0.037 8.1E-07 43.6 3.0 32 144-175 61-92 (249)
212 COG2265 TrmA SAM-dependent met 94.4 0.13 2.8E-06 45.4 6.6 66 141-208 291-368 (432)
213 TIGR00308 TRM1 tRNA(guanine-26 94.2 0.12 2.6E-06 44.7 5.9 64 145-208 46-120 (374)
214 TIGR02987 met_A_Alw26 type II 94.0 0.1 2.2E-06 47.1 5.4 66 143-208 31-118 (524)
215 PF04672 Methyltransf_19: S-ad 93.9 0.39 8.5E-06 39.5 8.0 56 143-198 68-132 (267)
216 PF02384 N6_Mtase: N-6 DNA Met 93.8 0.22 4.8E-06 41.7 6.7 67 142-208 45-131 (311)
217 KOG2915 tRNA(1-methyladenosine 93.8 0.52 1.1E-05 38.9 8.4 90 117-208 77-183 (314)
218 KOG2187 tRNA uracil-5-methyltr 93.8 0.085 1.8E-06 47.0 4.2 52 141-194 381-438 (534)
219 COG4076 Predicted RNA methylas 93.7 0.19 4.1E-06 39.3 5.5 61 145-207 34-101 (252)
220 COG5459 Predicted rRNA methyla 93.6 0.098 2.1E-06 44.6 4.1 65 144-208 114-188 (484)
221 PF05958 tRNA_U5-meth_tr: tRNA 93.3 0.099 2.1E-06 44.9 3.8 60 131-195 187-252 (352)
222 COG0116 Predicted N6-adenine-s 92.9 0.46 1E-05 41.0 7.3 68 141-208 189-305 (381)
223 KOG4300 Predicted methyltransf 92.4 0.59 1.3E-05 37.2 6.6 61 143-207 76-150 (252)
224 PF03059 NAS: Nicotianamine sy 92.3 0.39 8.5E-06 39.8 5.8 65 144-208 121-198 (276)
225 PRK10742 putative methyltransf 92.1 0.55 1.2E-05 38.3 6.3 74 131-208 76-170 (250)
226 PF11968 DUF3321: Putative met 91.4 0.35 7.7E-06 38.5 4.4 54 144-209 52-111 (219)
227 PRK10611 chemotaxis methyltran 90.5 0.72 1.6E-05 38.5 5.7 66 143-208 115-229 (287)
228 KOG4058 Uncharacterized conser 90.5 0.49 1.1E-05 35.6 4.2 60 142-202 71-138 (199)
229 COG3897 Predicted methyltransf 90.4 0.52 1.1E-05 37.1 4.4 66 143-209 79-149 (218)
230 PF14338 Mrr_N: Mrr N-terminal 90.4 0.59 1.3E-05 31.9 4.3 27 59-85 64-91 (92)
231 KOG1709 Guanidinoacetate methy 89.9 2.1 4.5E-05 34.3 7.4 67 141-207 99-174 (271)
232 PF03141 Methyltransf_29: Puta 89.8 0.32 6.9E-06 43.3 3.2 24 142-165 116-139 (506)
233 PF03291 Pox_MCEL: mRNA cappin 89.8 0.75 1.6E-05 39.2 5.4 55 143-198 62-132 (331)
234 COG1092 Predicted SAM-dependen 89.6 0.67 1.5E-05 40.4 5.0 63 144-208 218-296 (393)
235 PF01861 DUF43: Protein of unk 89.5 1.1 2.5E-05 36.2 5.9 64 143-207 44-117 (243)
236 KOG1975 mRNA cap methyltransfe 89.3 1.1 2.5E-05 37.9 5.9 55 142-198 116-183 (389)
237 TIGR03439 methyl_EasF probable 88.9 2 4.4E-05 36.4 7.3 56 143-198 76-143 (319)
238 PF13578 Methyltransf_24: Meth 88.8 0.13 2.7E-06 35.8 0.0 61 148-208 1-75 (106)
239 PF05971 Methyltransf_10: Prot 88.7 1.1 2.3E-05 37.7 5.4 55 144-199 103-170 (299)
240 PRK11933 yebU rRNA (cytosine-C 88.4 1.9 4.1E-05 38.6 7.2 67 142-208 112-189 (470)
241 KOG1663 O-methyltransferase [S 88.4 3.6 7.7E-05 33.2 7.9 68 141-208 71-155 (237)
242 COG0742 N6-adenine-specific me 88.2 2 4.2E-05 33.6 6.2 65 143-208 43-120 (187)
243 PF04072 LCM: Leucine carboxyl 88.0 2 4.3E-05 33.1 6.3 57 142-198 77-141 (183)
244 COG1565 Uncharacterized conser 87.9 2.2 4.7E-05 36.7 6.8 62 111-179 51-121 (370)
245 KOG1562 Spermidine synthase [A 87.2 0.52 1.1E-05 39.4 2.6 67 141-208 119-201 (337)
246 COG2521 Predicted archaeal met 86.3 1 2.2E-05 36.5 3.8 65 142-207 133-210 (287)
247 PF05206 TRM13: Methyltransfer 86.3 1.3 2.8E-05 36.4 4.5 36 141-176 16-56 (259)
248 TIGR02431 pcaR_pcaU beta-ketoa 86.1 0.65 1.4E-05 37.6 2.7 42 37-78 11-67 (248)
249 COG4742 Predicted transcriptio 85.6 0.72 1.6E-05 37.8 2.7 50 32-83 10-74 (260)
250 PF10672 Methyltrans_SAM: S-ad 84.6 2.3 4.9E-05 35.5 5.2 65 143-208 123-201 (286)
251 COG2520 Predicted methyltransf 84.0 2.4 5.2E-05 36.3 5.2 65 143-208 188-262 (341)
252 PF09339 HTH_IclR: IclR helix- 83.0 0.38 8.3E-06 29.0 0.0 21 38-58 6-26 (52)
253 PF02636 Methyltransf_28: Puta 82.9 1.8 4E-05 35.1 4.0 33 144-176 19-59 (252)
254 PF12692 Methyltransf_17: S-ad 82.7 11 0.00023 28.5 7.5 56 116-175 5-60 (160)
255 PF04989 CmcI: Cephalosporin h 82.3 4 8.6E-05 32.4 5.5 56 143-198 32-96 (206)
256 PF05891 Methyltransf_PK: AdoM 82.0 2.6 5.7E-05 33.7 4.4 64 143-208 55-128 (218)
257 KOG2940 Predicted methyltransf 81.9 2.4 5.3E-05 34.3 4.2 41 143-184 72-113 (325)
258 PF05219 DREV: DREV methyltran 81.8 1.6 3.4E-05 35.9 3.1 61 143-207 94-156 (265)
259 smart00346 HTH_ICLR helix_turn 80.1 2.3 5E-05 28.4 3.2 42 37-78 7-65 (91)
260 COG0500 SmtA SAM-dependent met 77.3 5 0.00011 28.0 4.4 51 147-198 52-109 (257)
261 KOG1331 Predicted methyltransf 76.6 1.9 4E-05 35.9 2.1 61 141-206 43-107 (293)
262 PLN02668 indole-3-acetate carb 76.2 7.8 0.00017 33.8 5.9 34 143-176 63-111 (386)
263 KOG1501 Arginine N-methyltrans 75.5 5.1 0.00011 35.6 4.5 51 142-193 65-122 (636)
264 COG1414 IclR Transcriptional r 75.5 2.5 5.4E-05 34.4 2.6 41 38-78 7-64 (246)
265 PRK11569 transcriptional repre 73.6 3.6 7.8E-05 33.9 3.2 41 38-78 31-88 (274)
266 PF14947 HTH_45: Winged helix- 72.8 2.4 5.3E-05 27.8 1.6 34 49-82 18-66 (77)
267 COG1064 AdhP Zn-dependent alco 72.3 5.7 0.00012 34.0 4.1 65 141-207 164-234 (339)
268 KOG3924 Putative protein methy 72.3 7.2 0.00016 34.0 4.6 68 141-208 190-278 (419)
269 smart00347 HTH_MARR helix_turn 72.2 5.4 0.00012 26.7 3.3 45 37-82 12-78 (101)
270 KOG1098 Putative SAM-dependent 70.4 12 0.00026 34.6 5.8 46 130-176 32-78 (780)
271 PF07381 DUF1495: Winged helix 68.9 7.8 0.00017 26.5 3.4 49 34-82 8-87 (90)
272 PF04445 SAM_MT: Putative SAM- 68.4 28 0.0006 28.2 7.0 74 131-208 63-157 (234)
273 PF14314 Methyltrans_Mon: Viru 68.1 11 0.00024 35.2 5.2 45 128-175 310-357 (675)
274 PF11312 DUF3115: Protein of u 67.9 11 0.00025 31.7 4.9 38 144-181 87-147 (315)
275 COG3355 Predicted transcriptio 67.5 6.6 0.00014 28.6 3.0 29 37-66 29-73 (126)
276 PRK09834 DNA-binding transcrip 67.1 6.6 0.00014 32.1 3.3 43 37-79 13-72 (263)
277 PRK10163 DNA-binding transcrip 66.9 6.3 0.00014 32.4 3.2 41 38-78 28-85 (271)
278 TIGR00027 mthyl_TIGR00027 meth 66.1 26 0.00057 28.7 6.7 55 142-198 80-143 (260)
279 smart00550 Zalpha Z-DNA-bindin 65.2 7 0.00015 25.0 2.5 41 36-76 7-66 (68)
280 TIGR03329 Phn_aa_oxid putative 65.1 8.4 0.00018 34.1 3.8 33 145-177 25-59 (460)
281 KOG2793 Putative N2,N2-dimethy 64.8 8.8 0.00019 31.4 3.5 38 143-181 86-123 (248)
282 PRK09273 hypothetical protein; 64.8 15 0.00033 29.2 4.7 42 142-183 61-102 (211)
283 PRK15090 DNA-binding transcrip 64.4 6.6 0.00014 31.9 2.8 40 38-78 17-73 (257)
284 PF02502 LacAB_rpiB: Ribose/Ga 62.5 17 0.00037 26.9 4.5 55 142-196 54-109 (140)
285 TIGR01470 cysG_Nterm siroheme 62.3 41 0.0009 26.4 6.9 61 144-208 9-75 (205)
286 TIGR00689 rpiB_lacA_lacB sugar 60.4 21 0.00046 26.6 4.6 42 143-184 54-95 (144)
287 COG1088 RfbB dTDP-D-glucose 4, 59.7 25 0.00055 29.7 5.3 48 150-198 5-62 (340)
288 TIGR01120 rpiB ribose 5-phosph 59.4 22 0.00048 26.5 4.6 42 143-184 55-96 (143)
289 PF13463 HTH_27: Winged helix 59.2 10 0.00022 23.6 2.4 39 40-78 8-68 (68)
290 KOG2920 Predicted methyltransf 58.6 16 0.00035 30.4 4.0 36 143-179 116-152 (282)
291 KOG2918 Carboxymethyl transfer 56.4 20 0.00043 30.4 4.2 40 141-180 85-126 (335)
292 cd00092 HTH_CRP helix_turn_hel 56.1 26 0.00057 21.5 4.0 28 49-76 24-67 (67)
293 PRK05571 ribose-5-phosphate is 55.8 27 0.00059 26.1 4.6 42 143-184 57-98 (148)
294 PF12840 HTH_20: Helix-turn-he 55.8 7.3 0.00016 24.1 1.3 28 30-58 5-32 (61)
295 COG1189 Predicted rRNA methyla 55.8 19 0.00042 29.2 4.0 43 131-175 68-110 (245)
296 PRK05562 precorrin-2 dehydroge 55.2 44 0.00095 26.9 6.0 64 143-208 24-91 (223)
297 smart00419 HTH_CRP helix_turn_ 54.2 12 0.00027 21.3 2.1 17 59-75 32-48 (48)
298 PRK09496 trkA potassium transp 53.0 81 0.0018 27.6 7.9 64 143-208 230-303 (453)
299 PF01189 Nol1_Nop2_Fmu: NOL1/N 52.6 28 0.00061 28.9 4.7 67 142-208 84-162 (283)
300 COG1568 Predicted methyltransf 52.6 35 0.00075 28.6 5.0 160 39-207 36-226 (354)
301 PF06406 StbA: StbA protein; 52.0 54 0.0012 27.6 6.4 39 141-179 270-310 (318)
302 TIGR02337 HpaR homoprotocatech 51.7 20 0.00042 25.3 3.2 48 35-83 28-97 (118)
303 PF03492 Methyltransf_7: SAM d 51.6 14 0.0003 31.5 2.7 66 141-206 14-111 (334)
304 PF07992 Pyr_redox_2: Pyridine 51.5 19 0.00042 27.3 3.4 30 146-175 1-30 (201)
305 PRK04176 ribulose-1,5-biphosph 51.0 39 0.00084 27.6 5.2 32 145-176 26-57 (257)
306 PF06690 DUF1188: Protein of u 50.9 1.4E+02 0.0029 24.4 8.5 77 122-207 22-101 (252)
307 PF02254 TrkA_N: TrkA-N domain 50.5 16 0.00035 25.3 2.6 44 153-198 5-51 (116)
308 KOG2666 UDP-glucose/GDP-mannos 49.7 17 0.00037 31.0 2.8 31 146-176 3-35 (481)
309 COG0698 RpiB Ribose 5-phosphat 49.6 27 0.00058 26.3 3.7 41 144-184 58-98 (151)
310 KOG3851 Sulfide:quinone oxidor 49.5 24 0.00053 30.3 3.7 33 142-174 37-71 (446)
311 COG3315 O-Methyltransferase in 49.4 22 0.00047 29.9 3.5 58 142-201 91-158 (297)
312 cd00315 Cyt_C5_DNA_methylase C 49.2 51 0.0011 27.1 5.7 60 146-208 2-68 (275)
313 KOG2651 rRNA adenine N-6-methy 49.1 22 0.00047 31.1 3.5 38 141-179 151-188 (476)
314 PF13412 HTH_24: Winged helix- 48.8 14 0.00031 21.4 1.8 22 36-58 4-25 (48)
315 PRK12615 galactose-6-phosphate 48.2 30 0.00064 26.6 3.8 42 143-184 56-97 (171)
316 PF09929 DUF2161: Uncharacteri 47.8 18 0.00038 26.0 2.3 45 28-79 58-115 (118)
317 COG3967 DltE Short-chain dehyd 47.6 28 0.00061 27.9 3.6 50 145-195 6-58 (245)
318 COG1733 Predicted transcriptio 47.2 66 0.0014 23.1 5.3 69 13-82 10-91 (120)
319 TIGR01119 lacB galactose-6-pho 47.0 32 0.00069 26.5 3.8 41 144-184 57-97 (171)
320 PRK06719 precorrin-2 dehydroge 46.8 90 0.002 23.3 6.3 62 143-208 12-76 (157)
321 COG2933 Predicted SAM-dependen 46.2 32 0.0007 28.6 3.9 38 141-180 209-246 (358)
322 PRK06475 salicylate hydroxylas 46.0 27 0.00058 30.1 3.8 31 145-175 3-33 (400)
323 COG0144 Sun tRNA and rRNA cyto 45.7 88 0.0019 26.9 6.8 68 141-208 154-235 (355)
324 KOG1099 SAM-dependent methyltr 45.7 46 0.00099 27.2 4.6 58 135-198 34-100 (294)
325 PRK07454 short chain dehydroge 45.6 95 0.0021 24.2 6.7 55 143-198 5-66 (241)
326 cd08283 FDH_like_1 Glutathione 45.2 45 0.00097 28.6 5.0 43 141-183 182-226 (386)
327 PF02082 Rrf2: Transcriptional 45.1 39 0.00085 22.2 3.7 29 49-77 24-70 (83)
328 PF01978 TrmB: Sugar-specific 45.0 3.2 6.9E-05 26.3 -1.7 29 37-66 10-53 (68)
329 COG4567 Response regulator con 45.0 1.3E+02 0.0029 22.9 6.6 67 108-175 15-89 (182)
330 PF04967 HTH_10: HTH DNA bindi 44.7 26 0.00057 21.3 2.5 27 28-58 5-31 (53)
331 COG1063 Tdh Threonine dehydrog 44.7 38 0.00082 28.9 4.4 40 145-184 170-211 (350)
332 PRK10857 DNA-binding transcrip 44.5 44 0.00096 25.4 4.3 29 49-77 24-70 (164)
333 KOG0822 Protein kinase inhibit 44.5 1.3E+02 0.0028 27.7 7.6 64 144-207 368-444 (649)
334 PF11599 AviRa: RRNA methyltra 44.4 57 0.0012 26.3 4.9 42 142-183 50-94 (246)
335 PRK13512 coenzyme A disulfide 44.3 33 0.00071 30.2 4.1 31 145-175 2-34 (438)
336 PRK08622 galactose-6-phosphate 44.2 36 0.00078 26.2 3.7 42 143-184 56-97 (171)
337 PRK03902 manganese transport t 44.1 32 0.00069 25.1 3.4 34 49-82 21-70 (142)
338 PRK06847 hypothetical protein; 44.0 34 0.00074 29.0 4.0 32 144-175 4-35 (375)
339 PRK08163 salicylate hydroxylas 43.8 34 0.00073 29.3 4.0 32 144-175 4-35 (396)
340 PF01022 HTH_5: Bacterial regu 43.6 11 0.00025 21.9 0.8 20 37-58 4-23 (47)
341 PF04820 Trp_halogenase: Trypt 43.3 31 0.00068 30.7 3.8 31 146-176 1-34 (454)
342 PTZ00215 ribose 5-phosphate is 43.0 56 0.0012 24.6 4.5 40 145-184 62-101 (151)
343 TIGR02702 SufR_cyano iron-sulf 42.4 23 0.0005 27.7 2.6 45 38-83 4-72 (203)
344 cd02190 epsilon_tubulin The tu 42.2 44 0.00096 29.0 4.5 38 131-169 90-132 (379)
345 PF01555 N6_N4_Mtase: DNA meth 41.9 69 0.0015 24.6 5.3 40 142-183 190-230 (231)
346 TIGR03739 PRTRC_D PRTRC system 41.8 1.3E+02 0.0029 25.1 7.3 36 143-178 273-308 (320)
347 PF08461 HTH_12: Ribonuclease 41.6 57 0.0012 20.6 3.9 19 40-58 3-21 (66)
348 KOG3987 Uncharacterized conser 41.1 14 0.00031 29.5 1.1 23 143-165 112-134 (288)
349 PRK07502 cyclohexadienyl dehyd 41.1 72 0.0016 26.5 5.5 64 144-208 6-72 (307)
350 KOG3201 Uncharacterized conser 40.9 4.8 0.0001 30.9 -1.4 55 144-198 30-94 (201)
351 PF07101 DUF1363: Protein of u 40.8 10 0.00023 26.1 0.3 29 147-175 6-39 (124)
352 PRK09126 hypothetical protein; 40.4 36 0.00077 29.1 3.6 31 145-175 4-34 (392)
353 PF05050 Methyltransf_21: Meth 40.2 37 0.0008 24.7 3.3 30 149-178 1-35 (167)
354 PF13601 HTH_34: Winged helix 39.6 13 0.00028 24.6 0.6 42 37-79 2-66 (80)
355 PF06969 HemN_C: HemN C-termin 39.6 22 0.00048 22.1 1.7 26 54-79 40-65 (66)
356 PRK06912 acoL dihydrolipoamide 39.3 39 0.00083 29.9 3.7 30 146-175 2-31 (458)
357 PRK06718 precorrin-2 dehydroge 39.2 1.1E+02 0.0023 24.0 5.9 62 143-208 9-76 (202)
358 PF01494 FAD_binding_3: FAD bi 38.8 35 0.00077 28.1 3.3 30 146-175 3-32 (356)
359 COG5631 Predicted transcriptio 38.8 1E+02 0.0022 23.6 5.3 58 22-79 63-147 (199)
360 PRK07236 hypothetical protein; 38.7 46 0.00099 28.5 4.0 32 144-175 6-37 (386)
361 PRK07045 putative monooxygenas 38.2 42 0.0009 28.7 3.7 32 144-175 5-36 (388)
362 TIGR01118 lacA galactose-6-pho 38.2 57 0.0012 24.2 3.9 37 148-184 59-95 (141)
363 COG0248 GppA Exopolyphosphatas 37.9 29 0.00062 31.4 2.7 28 131-160 119-146 (492)
364 PRK03573 transcriptional regul 37.8 43 0.00094 24.3 3.3 44 40-83 36-101 (144)
365 PRK11512 DNA-binding transcrip 37.7 38 0.00083 24.7 3.0 46 37-83 42-109 (144)
366 PRK06753 hypothetical protein; 37.3 46 0.00099 28.2 3.8 30 146-175 2-31 (373)
367 PF07801 DUF1647: Protein of u 37.2 1.3E+02 0.0027 22.4 5.6 56 145-201 61-125 (142)
368 PRK10141 DNA-binding transcrip 37.2 28 0.0006 25.0 2.0 31 27-58 8-38 (117)
369 PRK13917 plasmid segregation p 37.1 1.6E+02 0.0035 25.1 7.0 36 141-178 289-324 (344)
370 cd00286 Tubulin_FtsZ Tubulin/F 37.0 64 0.0014 27.2 4.6 37 131-168 80-121 (328)
371 COG1321 TroR Mn-dependent tran 36.9 47 0.001 25.0 3.4 25 59-83 48-73 (154)
372 PF03444 HrcA_DNA-bdg: Winged 36.8 91 0.002 20.7 4.2 24 59-82 47-74 (78)
373 PLN02927 antheraxanthin epoxid 36.7 48 0.001 31.2 4.0 34 142-175 79-112 (668)
374 PF07993 NAD_binding_4: Male s 36.6 58 0.0013 26.0 4.1 48 152-199 3-72 (249)
375 KOG2782 Putative SAM dependent 36.5 34 0.00075 27.6 2.6 37 143-179 43-79 (303)
376 PRK15181 Vi polysaccharide bio 36.2 94 0.002 26.2 5.5 62 145-207 16-95 (348)
377 PF14394 DUF4423: Domain of un 35.9 78 0.0017 24.2 4.5 56 24-79 21-86 (171)
378 PF08672 APC2: Anaphase promot 35.8 45 0.00099 20.8 2.6 38 36-74 19-60 (60)
379 PRK07588 hypothetical protein; 35.7 46 0.00099 28.5 3.6 30 146-175 2-31 (391)
380 PRK05868 hypothetical protein; 35.6 50 0.0011 28.3 3.8 31 145-175 2-32 (372)
381 PRK07364 2-octaprenyl-6-methox 35.6 60 0.0013 27.9 4.3 33 143-175 17-49 (415)
382 PRK07538 hypothetical protein; 35.4 48 0.001 28.7 3.7 30 146-175 2-31 (413)
383 KOG2352 Predicted spermine/spe 35.3 13 0.00029 33.2 0.2 71 110-184 266-337 (482)
384 PRK08621 galactose-6-phosphate 35.3 42 0.0009 25.0 2.8 35 150-184 61-95 (142)
385 PRK12613 galactose-6-phosphate 35.2 68 0.0015 23.8 3.9 37 148-184 58-94 (141)
386 PRK06617 2-octaprenyl-6-methox 35.0 50 0.0011 28.2 3.7 31 145-175 2-32 (374)
387 PF01073 3Beta_HSD: 3-beta hyd 34.9 66 0.0014 26.5 4.3 57 151-207 3-71 (280)
388 PF03686 UPF0146: Uncharacteri 34.8 47 0.001 24.2 2.9 59 142-207 12-75 (127)
389 KOG2798 Putative trehalase [Ca 34.7 74 0.0016 27.2 4.4 27 144-170 151-177 (369)
390 TIGR02032 GG-red-SF geranylger 34.7 54 0.0012 26.3 3.7 31 146-176 2-32 (295)
391 PRK07608 ubiquinone biosynthes 34.6 52 0.0011 28.0 3.7 31 145-175 6-36 (388)
392 TIGR02261 benz_CoA_red_D benzo 34.4 45 0.00098 27.5 3.1 24 141-164 95-143 (262)
393 COG0287 TyrA Prephenate dehydr 34.4 60 0.0013 27.0 3.9 63 146-209 5-71 (279)
394 PLN02819 lysine-ketoglutarate 34.2 1.2E+02 0.0025 30.3 6.3 66 143-208 568-654 (1042)
395 PRK06101 short chain dehydroge 34.1 80 0.0017 24.8 4.5 49 150-198 6-57 (240)
396 TIGR00292 thiazole biosynthesi 34.0 99 0.0021 25.1 5.1 33 144-176 21-53 (254)
397 PF01234 NNMT_PNMT_TEMT: NNMT/ 33.9 32 0.0007 28.2 2.2 31 143-175 56-87 (256)
398 cd06059 Tubulin The tubulin su 33.8 81 0.0017 27.3 4.8 40 130-170 79-123 (382)
399 PRK11728 hydroxyglutarate oxid 33.7 57 0.0012 28.0 3.9 32 146-177 4-37 (393)
400 PRK08850 2-octaprenyl-6-methox 33.7 51 0.0011 28.4 3.5 31 145-175 5-35 (405)
401 TIGR02010 IscR iron-sulfur clu 33.6 67 0.0015 23.3 3.7 29 49-77 24-70 (135)
402 COG1041 Predicted DNA modifica 33.5 2.3E+02 0.0049 24.5 7.2 64 142-207 196-269 (347)
403 PRK09564 coenzyme A disulfide 33.4 60 0.0013 28.3 4.0 30 146-175 2-33 (444)
404 TIGR01984 UbiH 2-polyprenyl-6- 33.0 60 0.0013 27.5 3.8 29 147-175 2-31 (382)
405 TIGR01988 Ubi-OHases Ubiquinon 32.8 60 0.0013 27.4 3.8 30 147-176 2-31 (385)
406 PRK08013 oxidoreductase; Provi 32.7 59 0.0013 28.0 3.8 31 145-175 4-34 (400)
407 PLN02427 UDP-apiose/xylose syn 32.6 1.2E+02 0.0025 26.0 5.6 53 145-198 15-76 (386)
408 CHL00194 ycf39 Ycf39; Provisio 32.4 1.1E+02 0.0023 25.4 5.2 56 150-207 5-69 (317)
409 cd02188 gamma_tubulin Gamma-tu 32.3 73 0.0016 28.3 4.3 34 134-168 124-162 (431)
410 PRK05714 2-octaprenyl-3-methyl 32.1 58 0.0013 28.0 3.7 32 145-176 3-34 (405)
411 TIGR02360 pbenz_hydroxyl 4-hyd 32.0 62 0.0013 27.9 3.8 31 145-175 3-33 (390)
412 PRK08849 2-octaprenyl-3-methyl 32.0 56 0.0012 28.0 3.5 31 145-175 4-34 (384)
413 TIGR02053 MerA mercuric reduct 31.9 59 0.0013 28.7 3.7 30 146-175 2-31 (463)
414 PRK06370 mercuric reductase; V 31.9 61 0.0013 28.6 3.8 31 145-175 6-36 (463)
415 PF01638 HxlR: HxlR-like helix 31.8 49 0.0011 22.1 2.5 33 50-82 30-73 (90)
416 TIGR00122 birA_repr_reg BirA b 31.7 32 0.00069 21.6 1.5 20 37-58 2-21 (69)
417 PF13241 NAD_binding_7: Putati 31.7 99 0.0022 21.1 4.1 61 143-208 6-66 (103)
418 PRK08020 ubiF 2-octaprenyl-3-m 31.6 69 0.0015 27.3 4.0 32 144-175 5-36 (391)
419 PHA01634 hypothetical protein 31.6 70 0.0015 23.6 3.3 31 143-175 28-59 (156)
420 PF10007 DUF2250: Uncharacteri 31.5 55 0.0012 22.4 2.7 12 59-70 45-56 (92)
421 COG4189 Predicted transcriptio 31.4 59 0.0013 26.5 3.2 30 28-58 16-45 (308)
422 PRK07251 pyridine nucleotide-d 31.4 63 0.0014 28.3 3.8 31 145-175 4-34 (438)
423 PTZ00318 NADH dehydrogenase-li 31.1 67 0.0015 28.1 3.9 33 143-175 9-41 (424)
424 PRK07417 arogenate dehydrogena 31.0 1E+02 0.0022 25.3 4.7 59 146-208 2-63 (279)
425 cd01516 FBPase_glpX Bacterial 31.0 88 0.0019 26.4 4.2 65 143-207 127-205 (309)
426 TIGR03140 AhpF alkyl hydropero 30.5 65 0.0014 29.1 3.8 31 144-174 212-242 (515)
427 PF14557 AphA_like: Putative A 29.9 79 0.0017 24.3 3.5 24 33-58 9-32 (175)
428 PF02541 Ppx-GppA: Ppx/GppA ph 29.8 55 0.0012 26.9 3.0 14 142-155 111-124 (285)
429 TIGR02133 RPI_actino ribose 5- 29.8 36 0.00077 25.5 1.7 42 143-184 57-98 (148)
430 PF08220 HTH_DeoR: DeoR-like h 29.8 38 0.00083 20.6 1.6 18 40-58 5-22 (57)
431 PRK08243 4-hydroxybenzoate 3-m 29.7 71 0.0015 27.4 3.8 31 145-175 3-33 (392)
432 PTZ00387 epsilon tubulin; Prov 29.7 1.2E+02 0.0027 27.2 5.3 37 131-168 122-163 (465)
433 PF03514 GRAS: GRAS domain fam 29.2 77 0.0017 27.5 3.8 45 130-176 99-150 (374)
434 TIGR03219 salicylate_mono sali 29.1 72 0.0016 27.6 3.7 30 146-175 2-32 (414)
435 PRK06116 glutathione reductase 28.9 72 0.0016 28.1 3.7 31 146-176 6-36 (450)
436 PF07848 PaaX: PaaX-like prote 28.9 36 0.00078 22.0 1.3 23 56-78 44-70 (70)
437 PRK09496 trkA potassium transp 28.8 2.9E+02 0.0062 24.1 7.5 60 146-208 2-71 (453)
438 PRK07535 methyltetrahydrofolat 28.8 86 0.0019 25.7 3.9 41 111-155 9-49 (261)
439 PF02608 Bmp: Basic membrane p 28.7 86 0.0019 26.1 4.0 34 142-175 60-93 (306)
440 TIGR01884 cas_HTH CRISPR locus 28.5 37 0.00081 26.5 1.7 41 37-78 145-203 (203)
441 PLN02206 UDP-glucuronate decar 28.5 1.7E+02 0.0036 25.9 6.0 63 144-207 119-188 (442)
442 TIGR02259 benz_CoA_red_A benzo 28.5 61 0.0013 28.6 3.0 24 141-164 265-313 (432)
443 KOG0024 Sorbitol dehydrogenase 28.5 1.2E+02 0.0026 26.1 4.7 45 141-185 167-213 (354)
444 TIGR03143 AhpF_homolog putativ 28.4 66 0.0014 29.4 3.5 31 145-175 5-35 (555)
445 COG1233 Phytoene dehydrogenase 28.3 95 0.0021 27.8 4.4 36 144-179 3-38 (487)
446 PTZ00117 malate dehydrogenase; 28.3 1.7E+02 0.0036 24.7 5.7 64 144-208 5-79 (319)
447 TIGR02028 ChlP geranylgeranyl 28.1 74 0.0016 27.6 3.6 30 146-175 2-31 (398)
448 PF12831 FAD_oxidored: FAD dep 27.7 58 0.0013 28.6 2.9 29 147-175 2-30 (428)
449 PF00549 Ligase_CoA: CoA-ligas 27.7 80 0.0017 23.7 3.2 34 142-175 34-81 (153)
450 PRK05976 dihydrolipoamide dehy 27.6 78 0.0017 28.1 3.7 31 145-175 5-35 (472)
451 PRK07494 2-octaprenyl-6-methox 27.5 83 0.0018 26.8 3.8 31 145-175 8-38 (388)
452 TIGR01989 COQ6 Ubiquinone bios 27.2 81 0.0018 27.6 3.7 30 146-175 2-35 (437)
453 TIGR01424 gluta_reduc_2 glutat 27.1 80 0.0017 27.8 3.7 30 146-175 4-33 (446)
454 COG3432 Predicted transcriptio 27.1 27 0.00059 24.1 0.6 24 59-82 55-82 (95)
455 PRK04172 pheS phenylalanyl-tRN 27.1 50 0.0011 29.7 2.4 59 36-96 7-84 (489)
456 PRK08773 2-octaprenyl-3-methyl 27.0 91 0.002 26.7 4.0 32 144-175 6-37 (392)
457 PRK06126 hypothetical protein; 26.9 76 0.0016 28.7 3.6 32 144-175 7-38 (545)
458 PF13450 NAD_binding_8: NAD(P) 26.9 74 0.0016 20.0 2.6 26 150-176 2-28 (68)
459 PF09114 MotA_activ: Transcrip 26.8 56 0.0012 22.3 2.0 24 59-82 56-79 (96)
460 PRK05732 2-octaprenyl-6-methox 26.8 84 0.0018 26.7 3.7 31 145-175 4-37 (395)
461 PRK15076 alpha-galactosidase; 26.7 1.2E+02 0.0026 26.9 4.6 64 145-208 2-81 (431)
462 KOG1335 Dihydrolipoamide dehyd 26.6 87 0.0019 27.7 3.6 32 144-175 39-70 (506)
463 COG0031 CysK Cysteine synthase 26.6 2.2E+02 0.0047 24.1 5.9 42 130-175 159-204 (300)
464 PRK11031 guanosine pentaphosph 26.5 54 0.0012 29.6 2.5 16 143-158 132-147 (496)
465 cd05197 GH4_glycoside_hydrolas 26.5 1.6E+02 0.0034 26.1 5.4 62 146-208 2-80 (425)
466 PRK03659 glutathione-regulated 26.4 1.8E+02 0.0038 27.0 5.9 59 145-207 401-469 (601)
467 cd00740 MeTr MeTr subgroup of 26.3 97 0.0021 25.3 3.8 38 116-156 14-51 (252)
468 COG1179 Dinucleotide-utilizing 26.2 2.4E+02 0.0052 23.2 5.9 34 144-177 30-64 (263)
469 PLN02661 Putative thiazole syn 26.2 1.2E+02 0.0026 26.3 4.4 33 144-176 92-125 (357)
470 TIGR02147 Fsuc_second hypothet 26.2 1.7E+02 0.0036 24.3 5.2 55 24-78 119-183 (271)
471 PRK06185 hypothetical protein; 26.2 81 0.0018 27.0 3.5 32 144-175 6-37 (407)
472 TIGR01421 gluta_reduc_1 glutat 26.1 77 0.0017 28.0 3.4 30 146-175 4-33 (450)
473 cd01065 NAD_bind_Shikimate_DH 26.1 2.2E+02 0.0047 20.5 5.4 31 143-175 18-51 (155)
474 cd00423 Pterin_binding Pterin 26.0 1.5E+02 0.0033 24.0 5.0 15 141-155 34-48 (258)
475 PRK06115 dihydrolipoamide dehy 25.9 87 0.0019 27.8 3.7 30 146-175 5-34 (466)
476 TIGR00330 glpX fructose-1,6-bi 25.9 1E+02 0.0022 26.1 3.8 65 143-207 127-205 (321)
477 COG4744 Uncharacterized conser 25.9 1.1E+02 0.0025 21.7 3.4 47 1-47 10-56 (121)
478 PRK10637 cysG siroheme synthas 25.8 1.9E+02 0.004 25.8 5.7 64 143-208 11-78 (457)
479 PLN02463 lycopene beta cyclase 25.8 82 0.0018 28.0 3.5 32 144-175 28-59 (447)
480 smart00420 HTH_DEOR helix_turn 25.7 62 0.0014 18.4 2.0 18 40-58 5-22 (53)
481 KOG1430 C-3 sterol dehydrogena 25.7 85 0.0018 27.2 3.4 53 145-198 5-66 (361)
482 COG4301 Uncharacterized conser 25.7 1.2E+02 0.0026 25.1 4.1 34 143-176 78-115 (321)
483 PRK08267 short chain dehydroge 25.7 1.7E+02 0.0037 23.1 5.2 52 146-198 3-59 (260)
484 PF12324 HTH_15: Helix-turn-he 25.4 47 0.001 22.0 1.4 18 40-58 29-46 (77)
485 PRK07818 dihydrolipoamide dehy 25.3 90 0.0019 27.6 3.7 31 145-175 5-35 (466)
486 PRK09754 phenylpropionate diox 25.3 92 0.002 26.9 3.7 32 144-175 3-36 (396)
487 PRK11908 NAD-dependent epimera 25.1 1.5E+02 0.0033 24.7 5.0 48 150-198 6-57 (347)
488 TIGR01181 dTDP_gluc_dehyt dTDP 25.1 1.2E+02 0.0026 24.6 4.2 49 150-198 4-61 (317)
489 COG4820 EutJ Ethanolamine util 25.0 39 0.00084 27.0 1.1 16 143-158 140-155 (277)
490 PRK08244 hypothetical protein; 25.0 84 0.0018 28.0 3.5 31 145-175 3-33 (493)
491 TIGR03192 benz_CoA_bzdQ benzoy 24.9 81 0.0018 26.5 3.1 23 142-164 124-171 (293)
492 PRK06184 hypothetical protein; 24.9 89 0.0019 27.9 3.6 31 145-175 4-34 (502)
493 COG0451 WcaG Nucleoside-diphos 24.9 83 0.0018 25.5 3.2 49 147-198 3-53 (314)
494 PRK07846 mycothione reductase; 24.8 86 0.0019 27.7 3.4 28 146-175 3-30 (451)
495 PRK06292 dihydrolipoamide dehy 24.7 94 0.002 27.3 3.7 30 146-175 5-34 (460)
496 TIGR01423 trypano_reduc trypan 24.7 87 0.0019 28.1 3.5 31 145-175 4-35 (486)
497 PRK03562 glutathione-regulated 24.4 1.8E+02 0.004 27.1 5.6 61 145-208 401-470 (621)
498 PF01210 NAD_Gly3P_dh_N: NAD-d 24.3 81 0.0018 23.4 2.8 35 146-180 1-36 (157)
499 PRK07326 short chain dehydroge 24.3 1.6E+02 0.0035 22.8 4.7 53 145-198 7-65 (237)
500 PRK10669 putative cation:proto 24.2 2E+02 0.0042 26.3 5.7 49 146-198 419-470 (558)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.94 E-value=4.6e-27 Score=190.57 Aligned_cols=139 Identities=37% Similarity=0.661 Sum_probs=118.4
Q ss_pred CCCCceecCHhhhhhhcCCC-cc-----------------cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHH
Q 046346 67 DEEQGYVLTNASKLLLKDNP-LS-----------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEA 121 (209)
Q Consensus 67 ~~~~~y~~t~~s~~l~~~~~-~~-----------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~ 121 (209)
+++++|+||+.|+.|+.+++ .+ .+|.+++++|. ++|.. +|++++|+..+.|+.+
T Consensus 1 ~~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 79 (241)
T PF00891_consen 1 KEGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAA 79 (241)
T ss_dssp SSTEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHH
T ss_pred CCCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHH
Confidence 46789999999998776655 22 68889999886 54533 6778899999999999
Q ss_pred HHhhhHhhH-HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCC
Q 046346 122 MASDARLAT-SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAI 200 (209)
Q Consensus 122 m~~~~~~~~-~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~ 200 (209)
|...+.... +.+.+.++ |++..+|||||||+|.++.+++++||+++++++|+|+|++.+++ .+||++++||||+++
T Consensus 80 m~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~ 156 (241)
T PF00891_consen 80 MAEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPL 156 (241)
T ss_dssp HHHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCC
T ss_pred HHhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhh
Confidence 999888776 78888898 88999999999999999999999999999999999999999986 999999999999999
Q ss_pred CCCcEEEeC
Q 046346 201 SPADAVVLK 209 (209)
Q Consensus 201 p~~D~~~l~ 209 (209)
|.+|+|+||
T Consensus 157 P~~D~~~l~ 165 (241)
T PF00891_consen 157 PVADVYLLR 165 (241)
T ss_dssp SSESEEEEE
T ss_pred ccccceeee
Confidence 999999986
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.94 E-value=4e-26 Score=191.27 Aligned_cols=175 Identities=23% Similarity=0.393 Sum_probs=133.3
Q ss_pred HHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCceecCHhhhhhhcC-CCc---c
Q 046346 28 NSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQGYVLTNASKLLLKD-NPL---S 88 (209)
Q Consensus 28 ~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~y~~t~~s~~l~~~-~~~---~ 88 (209)
...+|++|+++||||+|.+ +|.|++|||+ |+++|+++..+++|++|+.++.+..+ ++. +
T Consensus 3 ~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~~~~~~~~~~ 80 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLH 80 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhccCCccchhhh
Confidence 4689999999999999986 7999999999 78999977778999999999755443 321 0
Q ss_pred ----------------cchhhhhhcCCCCCccc--cccCCCcHHHHHHHHHHH-hhhHhhHHHHHHhccccccCCCeEEE
Q 046346 89 ----------------QQLRSWFQNDDPTPFGT--EYDGDEPKLNNFFNEAMA-SDARLATSVMIQKCKNVFEGLNSLVD 149 (209)
Q Consensus 89 ----------------~~l~~~l~~~~~~~f~~--~~~~~~~~~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~~vlD 149 (209)
..+.++++++ ++|+. .+.+..++.. .|...|. .......+.+++.++ +++..+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~r~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vlD 155 (306)
T TIGR02716 81 QTPVAKAMAFLADDFYMGLSQAVRGQ--KNFKGQVPYPPVTREDN-LYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMID 155 (306)
T ss_pred cCchHHHHHHHHHHHHHhHHHHhcCC--cccccccCCCCCCHHHH-HhHHHHHHhcchhHHHHHHHHcC--CCCCCEEEE
Confidence 3455666632 34543 2222333333 3444444 444455566777777 788899999
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCCCcEEEeC
Q 046346 150 VGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISPADAVVLK 209 (209)
Q Consensus 150 vGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~~D~~~l~ 209 (209)
||||+|.++..+++++|+++++++|+|++++.+++ ..+||+++.+|+++ ++|.+|+|+++
T Consensus 156 iG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~ 222 (306)
T TIGR02716 156 VGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC 222 (306)
T ss_pred eCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeE
Confidence 99999999999999999999999999999988764 46799999999997 67779999864
No 3
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.89 E-value=4.7e-22 Score=164.94 Aligned_cols=193 Identities=30% Similarity=0.433 Sum_probs=155.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH--------------------HHhCCCCC---CC
Q 046346 12 PLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK--------------------LVSSGNNN---DE 68 (209)
Q Consensus 12 ~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~--------------------L~~~g~~e---~~ 68 (209)
..+...+++++++++..++++.+|+||||||.|..++ + +.|||. |++.+++. ..
T Consensus 3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~-~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~ 79 (342)
T KOG3178|consen 3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAG-S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG 79 (342)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC-C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec
Confidence 3456688999999999999999999999999999853 2 666665 67777622 11
Q ss_pred CCceecCHhhhhhhcCCC-cc-----------------cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHH
Q 046346 69 EQGYVLTNASKLLLKDNP-LS-----------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMA 123 (209)
Q Consensus 69 ~~~y~~t~~s~~l~~~~~-~~-----------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~ 123 (209)
...|.+++.++++..++. .| ..+.++++.++ .+|.. +|...+......|+++|.
T Consensus 80 ~~~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~ 158 (342)
T KOG3178|consen 80 GEVYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMS 158 (342)
T ss_pred ceeeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHH
Confidence 228999999987664332 22 45666666664 23322 666777777889999999
Q ss_pred hhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCCCCC
Q 046346 124 SDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPA 203 (209)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~p~~ 203 (209)
..+....+.+++.+.. |++....||||||.|..+..++..||+++++.+|+|.+++.|....+.|+.+.||+|.+.|.+
T Consensus 159 ~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~ 237 (342)
T KOG3178|consen 159 FLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKG 237 (342)
T ss_pred HHHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCc
Confidence 9998888888888863 888999999999999999999999999999999999999998864367999999999999999
Q ss_pred cEEEeC
Q 046346 204 DAVVLK 209 (209)
Q Consensus 204 D~~~l~ 209 (209)
|+|+||
T Consensus 238 daI~mk 243 (342)
T KOG3178|consen 238 DAIWMK 243 (342)
T ss_pred CeEEEE
Confidence 999986
No 4
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.17 E-value=1.3e-10 Score=82.65 Aligned_cols=66 Identities=27% Similarity=0.459 Sum_probs=56.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccC-CC-CCC-CCcEEEeC
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDM-FK-AIS-PADAVVLK 209 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~-~~-~~p-~~D~~~l~ 209 (209)
..+|||||||+|.++..+++++|..+++++|. |++++.+++ ..+||+++.+|+ +. +.+ .+|++++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEEC
Confidence 47899999999999999999999999999999 788887775 468999999999 33 333 49999863
No 5
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.90 E-value=1e-08 Score=83.85 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=61.1
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC--CCcEEE
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PADAVV 207 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p--~~D~~~ 207 (209)
..+++.+. .....+|||||||+|.++..+++++|+.+++++|+ |.+++.|++ .+++++.+|+.+-.+ .+|+|+
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--cCCcEEEcChhhCCCCCCceEEE
Confidence 45666666 56678999999999999999999999999999999 888988873 468999999865222 399998
Q ss_pred e
Q 046346 208 L 208 (209)
Q Consensus 208 l 208 (209)
.
T Consensus 95 ~ 95 (255)
T PRK14103 95 S 95 (255)
T ss_pred E
Confidence 6
No 6
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.90 E-value=6.7e-09 Score=80.99 Aligned_cols=73 Identities=26% Similarity=0.469 Sum_probs=59.7
Q ss_pred HHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC-CcEE
Q 046346 134 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP-ADAV 206 (209)
Q Consensus 134 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~-~D~~ 206 (209)
+..++ .....+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ...+++++.+|...+++. +|++
T Consensus 24 ~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v 101 (187)
T PRK08287 24 LSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI 101 (187)
T ss_pred HHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence 34454 55678999999999999999999999999999999 778877764 135799999998666665 9998
Q ss_pred Ee
Q 046346 207 VL 208 (209)
Q Consensus 207 ~l 208 (209)
++
T Consensus 102 ~~ 103 (187)
T PRK08287 102 FI 103 (187)
T ss_pred EE
Confidence 75
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.88 E-value=9.2e-09 Score=82.90 Aligned_cols=67 Identities=25% Similarity=0.337 Sum_probs=58.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-----CCCeEEEEccCCC-CCCC--CcEEEeC
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-----LVNLKYVGGDMFK-AISP--ADAVVLK 209 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~~ri~~~~gD~~~-~~p~--~D~~~l~ 209 (209)
...+|||||||||.++..+++..++.+++++|. +.|++.|++- ...|+|+.+|+.+ |+|. +|+|.++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~ 126 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTIS 126 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEee
Confidence 579999999999999999999999999999999 7999998861 1239999999988 8886 9999863
No 8
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.86 E-value=2.4e-08 Score=81.59 Aligned_cols=77 Identities=19% Similarity=0.359 Sum_probs=63.7
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC--CCcEE
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PADAV 206 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p--~~D~~ 206 (209)
...++..++ ..+..+|||||||+|.++..+++++|..+++++|. +.+++.+++...+++++.+|+.+-.+ .+|++
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 345566665 56778999999999999999999999999999999 78898888666789999999876323 38998
Q ss_pred Ee
Q 046346 207 VL 208 (209)
Q Consensus 207 ~l 208 (209)
+.
T Consensus 98 ~~ 99 (258)
T PRK01683 98 FA 99 (258)
T ss_pred EE
Confidence 75
No 9
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.86 E-value=1e-08 Score=77.26 Aligned_cols=66 Identities=20% Similarity=0.375 Sum_probs=55.1
Q ss_pred CCCeEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C--CC-CCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIA-KAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-PADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~-~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~--~p-~~D~~~l 208 (209)
+..+|||+|||+|.++..++ +.+|..+++++|+ +.+++.|++ ..++++|..+|+++ + ++ .+|+++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEE
Confidence 46799999999999999999 5689999999999 888988875 24589999999998 4 33 4999875
No 10
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.84 E-value=8.2e-09 Score=80.96 Aligned_cols=75 Identities=20% Similarity=0.374 Sum_probs=64.4
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC--CCcEEE
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PADAVV 207 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p--~~D~~~ 207 (209)
..++..++ .....+|+|+|||+|+....|++++|....+++|- |+|++.|++....++|..+|.-+=.| ..|+++
T Consensus 20 ~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 20 RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 45677777 77899999999999999999999999999999998 89999998778899999999876333 367664
No 11
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.84 E-value=2.5e-08 Score=81.18 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=56.3
Q ss_pred cCCCeEEEecCCccHHHHHHHH--HCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCCCcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAK--AFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~--~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~~D~~~l 208 (209)
.+..+|||||||+|..+..+++ .+|+.+++++|. |.+++.|++ ...+++++.+|+.+ +.+.+|++++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~ 131 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVL 131 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEeh
Confidence 4568999999999999999988 469999999999 899988875 24589999999976 5556888764
No 12
>PRK06922 hypothetical protein; Provisional
Probab=98.83 E-value=2.1e-08 Score=90.63 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=71.9
Q ss_pred cccCCCcHHHHHHHHHHHhhhHhh--HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhc
Q 046346 106 EYDGDEPKLNNFFNEAMASDARLA--TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGL 182 (209)
Q Consensus 106 ~~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a 182 (209)
+++...++...+|...|....... .......++ +.+..+|||||||+|..+..+++++|+.+++++|+ +.+++.|
T Consensus 381 d~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~A 458 (677)
T PRK06922 381 DFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTL 458 (677)
T ss_pred HHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 445566667777777665533221 111223344 44678999999999999999999999999999999 5678877
Q ss_pred cc----CCCCeEEEEccCCC-C--CC-C-CcEEEe
Q 046346 183 ES----DLVNLKYVGGDMFK-A--IS-P-ADAVVL 208 (209)
Q Consensus 183 ~~----~~~ri~~~~gD~~~-~--~p-~-~D~~~l 208 (209)
++ ...+++++.+|..+ + ++ + +|+|+.
T Consensus 459 rarl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 459 KKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred HHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 64 23578889999865 2 33 3 899975
No 13
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.81 E-value=1.5e-08 Score=80.22 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=58.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCCC--CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISP--ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p~--~D~~~l 208 (209)
.+..+|||||||+|..+..+++..|..+++++|+ +++++.|++...++++..+|++++.+. +|+++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~ 111 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLT 111 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEE
Confidence 4567899999999999999999999999999999 789999886456788999999886653 899975
No 14
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.80 E-value=2.6e-08 Score=76.64 Aligned_cols=66 Identities=29% Similarity=0.446 Sum_probs=56.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-P-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-~-~D~~~l 208 (209)
...++||+|||+|.++..+++++|+.+++.+|+ +.+++.++. ..+.++++.+|++++.+ . +|+|+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEE
Confidence 578999999999999999999999999999999 777877764 12239999999999876 3 999975
No 15
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.77 E-value=4.6e-08 Score=79.16 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=56.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCCCcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~--~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~~D~~~l 208 (209)
.+..+|||||||+|..+..++++ +|+.+++++|+ +.+++.|++ ...+++++.+|+.+ +++.+|+++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEee
Confidence 45679999999999999999997 48899999999 889988874 23589999999987 5666887754
No 16
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.73 E-value=5.1e-08 Score=83.83 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=59.3
Q ss_pred HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C--CCCeEEEEccCCCCCCC
Q 046346 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D--LVNLKYVGGDMFKAISP 202 (209)
Q Consensus 132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~--~~ri~~~~gD~~~~~p~ 202 (209)
.+++.++ .....+|||+|||+|.++..+++++|+.+++.+|. +.+++.|++ . ..+++++.+|.++.++.
T Consensus 219 llL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 219 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence 3455555 22346999999999999999999999999999999 577777764 1 24799999999886643
Q ss_pred --CcEEEe
Q 046346 203 --ADAVVL 208 (209)
Q Consensus 203 --~D~~~l 208 (209)
+|+|+.
T Consensus 297 ~~fDlIls 304 (378)
T PRK15001 297 FRFNAVLC 304 (378)
T ss_pred CCEEEEEE
Confidence 899975
No 17
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.72 E-value=4.5e-08 Score=81.40 Aligned_cols=66 Identities=27% Similarity=0.398 Sum_probs=57.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP--ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~--~D~~~l 208 (209)
+..+|+|+|||+|.++..+++++|+.+++++|+ +.+++.|++ ..++|+++.+|+++++|. +|+++.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEE
Confidence 357899999999999999999999999999999 788887764 246899999999887663 899875
No 18
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=3.2e-08 Score=82.05 Aligned_cols=63 Identities=29% Similarity=0.450 Sum_probs=55.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC-CCeEEEEccCCCCCCC-CcEEEe
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL-VNLKYVGGDMFKAISP-ADAVVL 208 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~-~ri~~~~gD~~~~~p~-~D~~~l 208 (209)
+|+|||||||.+++.+++++|+++++..|+ |.+++.|+. .. .|+.++.+|+|+++++ +|+++.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEe
Confidence 899999999999999999999999999999 788888764 12 6777888899998886 999874
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.71 E-value=9.3e-08 Score=76.80 Aligned_cols=75 Identities=21% Similarity=0.281 Sum_probs=59.0
Q ss_pred HHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC-
Q 046346 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP- 202 (209)
Q Consensus 132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~- 202 (209)
.+++.++ .....+|||+|||+|.++..+++.+ |..+++++|+ |.+++.+++ ..++++++.+|+.+ ++|.
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3444444 4566899999999999999999986 6789999999 788877664 23689999999977 5553
Q ss_pred -CcEEEe
Q 046346 203 -ADAVVL 208 (209)
Q Consensus 203 -~D~~~l 208 (209)
+|++++
T Consensus 114 ~fD~V~~ 120 (231)
T TIGR02752 114 SFDYVTI 120 (231)
T ss_pred CccEEEE
Confidence 899875
No 20
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.70 E-value=4.5e-08 Score=82.24 Aligned_cols=64 Identities=28% Similarity=0.405 Sum_probs=56.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP--ADAVVL 208 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~--~D~~~l 208 (209)
.+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++ ..+||+++.+|+++.+|. +|+|+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEE
Confidence 6899999999999999999999999999999 788887764 246899999999887663 899974
No 21
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.69 E-value=3.4e-08 Score=79.78 Aligned_cols=68 Identities=25% Similarity=0.419 Sum_probs=49.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP--ADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~--~D~~~l 208 (209)
.....+|||||||||.++..++++. |+.+++++|. +.+++.|++ ...+|+++.+|..+ |+|. +|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~ 122 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTC 122 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEH
Confidence 3456799999999999999999885 6789999999 899998875 24599999999987 7775 899975
No 22
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.68 E-value=2e-07 Score=76.61 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=56.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc--------CCCCeEEEEccCCC-CCCC--CcEEE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK-AISP--ADAVV 207 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~--------~~~ri~~~~gD~~~-~~p~--~D~~~ 207 (209)
..+..+|||||||+|.++..+++++ |+.+++++|. +++++.|++ ..++++++.+|+.+ |+|. +|+++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 3456899999999999999999885 6789999999 788888763 13589999999876 6664 89987
Q ss_pred e
Q 046346 208 L 208 (209)
Q Consensus 208 l 208 (209)
+
T Consensus 151 ~ 151 (261)
T PLN02233 151 M 151 (261)
T ss_pred E
Confidence 5
No 23
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.67 E-value=2.5e-07 Score=66.53 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=57.0
Q ss_pred HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---CCCC-
Q 046346 133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AISP- 202 (209)
Q Consensus 133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~~p~- 202 (209)
+++.+. .....+++|+|||+|.++..+++++|+.+++++|. +.+++.+++ ...+++++.+|... ..+.
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 444444 44457999999999999999999999999999999 677776653 23579999998764 2333
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|++++
T Consensus 89 ~D~v~~ 94 (124)
T TIGR02469 89 PDRVFI 94 (124)
T ss_pred CCEEEE
Confidence 899875
No 24
>PRK04457 spermidine synthase; Provisional
Probab=98.66 E-value=6.4e-08 Score=79.55 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=57.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CCCC-CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AISP-ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~p~-~D~~~l 208 (209)
+.+++|||||||+|.++..+++.+|+.+++++|+ |++++.|++ ..+|++++.+|..+ ..+. +|+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 4568999999999999999999999999999999 899998875 24789999999865 3454 999985
No 25
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.65 E-value=1.6e-07 Score=78.06 Aligned_cols=64 Identities=25% Similarity=0.481 Sum_probs=55.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP--ADAVVL 208 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~--~D~~~l 208 (209)
.+|+|+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..+|++++.+|++++++. +|+++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEE
Confidence 6899999999999999999999999999999 778877764 235799999999987763 899874
No 26
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.64 E-value=1.9e-07 Score=72.10 Aligned_cols=73 Identities=26% Similarity=0.337 Sum_probs=59.3
Q ss_pred HHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---CCCCc
Q 046346 134 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---ISPAD 204 (209)
Q Consensus 134 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~p~~D 204 (209)
+..+. ..+..+++|||||+|.++++++..+|..+++.+|. +++++..+. ..++++.+.||..+. +|.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 34454 56678999999999999999999999999999998 666665443 368999999998774 44589
Q ss_pred EEEe
Q 046346 205 AVVL 208 (209)
Q Consensus 205 ~~~l 208 (209)
.+++
T Consensus 105 aiFI 108 (187)
T COG2242 105 AIFI 108 (187)
T ss_pred EEEE
Confidence 9986
No 27
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.64 E-value=3e-07 Score=71.81 Aligned_cols=66 Identities=29% Similarity=0.333 Sum_probs=54.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~-~D~~~l 208 (209)
...+|||||||+|..+..+++++|+.+++.+|. +.+++.|++ ..++++++.+|+.+ +.+. +|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~ 118 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTS 118 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEE
Confidence 468999999999999999999999999999999 677877664 23459999999876 2233 999985
No 28
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.64 E-value=1.7e-07 Score=77.12 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=61.0
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCC--
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP-- 202 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~-- 202 (209)
...+++.+. ..+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.|++ ..++++++.+|+.+ ++|.
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 455666665 6777899999999999999998876 678999999 677777764 24689999999987 5664
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|+|+.
T Consensus 118 FD~V~s 123 (263)
T PTZ00098 118 FDMIYS 123 (263)
T ss_pred eEEEEE
Confidence 899875
No 29
>PLN02244 tocopherol O-methyltransferase
Probab=98.63 E-value=2.3e-07 Score=79.04 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=54.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP--ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~--~D~~~l 208 (209)
....+|||||||+|..+..+++++ +.+++++|+ +.+++.+++ ..++++|+.+|+.+ ++|. +|+|+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEE
Confidence 456899999999999999999998 779999999 677776653 34689999999987 5653 899874
No 30
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.63 E-value=1.6e-07 Score=75.20 Aligned_cols=66 Identities=27% Similarity=0.438 Sum_probs=54.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AISP--ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~~ri~~~~gD~~~-~~p~--~D~~~l 208 (209)
...+|||||||+|.++..+++.+|..+++++|. +.+++.+++ ..++++++.+|+.+ +++. +|+++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEE
Confidence 357999999999999999999999999999999 677766664 34589999999976 4443 899875
No 31
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.62 E-value=6.5e-08 Score=67.76 Aligned_cols=62 Identities=29% Similarity=0.500 Sum_probs=48.8
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCC--CCcEEEe
Q 046346 147 LVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PADAVVL 208 (209)
Q Consensus 147 vlDvGgG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p--~~D~~~l 208 (209)
|||+|||+|..+..+++.+ |+.+.+++|+ +++++.+++ ...+++|+.+|+.+ +++ .+|+|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999997 6789999999 788888775 23589999999977 332 3899975
No 32
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.62 E-value=1.2e-07 Score=73.77 Aligned_cols=65 Identities=25% Similarity=0.312 Sum_probs=52.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCC-CCcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-PADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p-~~D~~~l 208 (209)
..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..++++++.+|+.+ +.. .+|+|+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s 115 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITS 115 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEe
Confidence 67999999999999999999999999999999 566665543 23579999999876 222 3999874
No 33
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.62 E-value=4.1e-07 Score=74.07 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhhH------hhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCC
Q 046346 114 LNNFFNEAMASDAR------LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDL 186 (209)
Q Consensus 114 ~~~~f~~~m~~~~~------~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ 186 (209)
..+.|.++...+.. ..+..+++.++ .....+|||+|||+|.++..+++. ..+++++|+ |.+++.+++..
T Consensus 9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 9 IAAAFGRAAAHYEQHAELQRQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC
Confidence 45567766654322 23344455554 335689999999999999988875 468999999 88898887544
Q ss_pred CCeEEEEccCCC-CCCC--CcEEEe
Q 046346 187 VNLKYVGGDMFK-AISP--ADAVVL 208 (209)
Q Consensus 187 ~ri~~~~gD~~~-~~p~--~D~~~l 208 (209)
..+.++.+|+.+ +++. +|+++.
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEE
Confidence 456789999866 5553 899874
No 34
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.61 E-value=1.6e-07 Score=75.05 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=53.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVVL 208 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~l 208 (209)
++|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|+.+ +++. +|+++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeeh
Confidence 4799999999999999999999999999999 667766654 35789999999976 4555 999863
No 35
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.60 E-value=2.1e-07 Score=80.61 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=55.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCC-CC---CCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA-IS---PADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~-~p---~~D~~~l 208 (209)
...+++|+|||+|.++..+++++|+.+++++|+ +.+++.|++ ...+++++.+|++++ .| .+|+++.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVS 325 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVS 325 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEE
Confidence 446999999999999999999999999999999 888887774 345899999999874 33 2899875
No 36
>PRK05785 hypothetical protein; Provisional
Probab=98.59 E-value=3.4e-07 Score=73.65 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=51.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l 208 (209)
...+|||||||+|.++..+++++ +.+++++|. +++++.|++. ..++.+|+.+ |+|. +|+++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---~~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---DDKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---cceEEechhhCCCCCCCEEEEEe
Confidence 46899999999999999999998 678999999 8999988742 3467888876 6654 899875
No 37
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.59 E-value=4.8e-07 Score=71.67 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=57.3
Q ss_pred HHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC--
Q 046346 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-- 201 (209)
Q Consensus 132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p-- 201 (209)
.+++.+. ..+..+|||||||+|.++..+++..+ ..+++.+|. +++++.|++ ...+++++.+|+.+.+|
T Consensus 63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 3444444 44568999999999999999999875 558999999 677776664 23579999999987544
Q ss_pred -CCcEEEe
Q 046346 202 -PADAVVL 208 (209)
Q Consensus 202 -~~D~~~l 208 (209)
.+|+|++
T Consensus 141 ~~fD~Ii~ 148 (205)
T PRK13944 141 APFDAIIV 148 (205)
T ss_pred CCccEEEE
Confidence 3899875
No 38
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.57 E-value=3e-07 Score=72.35 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=56.9
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC-
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP- 202 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~- 202 (209)
+.+++.++ .....+|||+|||+|..+..++++ ..+++++|+ +.+++.+++ ...++++...|+.+ +++.
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 45566665 445689999999999999999987 468999999 777877664 12458899999876 4554
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|+|+.
T Consensus 96 fD~I~~ 101 (197)
T PRK11207 96 YDFILS 101 (197)
T ss_pred cCEEEE
Confidence 999874
No 39
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.56 E-value=5.9e-07 Score=71.59 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=59.2
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC--
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-- 201 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-- 201 (209)
..+++.++ ..+..+|||||||+|.++..+++..+ +.+++.+|+ |++++.|++ ..++++++.+|..+.++
T Consensus 67 ~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 67 AMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 34455555 55678999999999999999999875 467899998 788887764 23689999999987433
Q ss_pred -CCcEEEe
Q 046346 202 -PADAVVL 208 (209)
Q Consensus 202 -~~D~~~l 208 (209)
.+|++++
T Consensus 145 ~~fD~Ii~ 152 (215)
T TIGR00080 145 APYDRIYV 152 (215)
T ss_pred CCCCEEEE
Confidence 3999986
No 40
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.56 E-value=2.6e-07 Score=75.55 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=52.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC--CCC-C-CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AIS-P-ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~--~~p-~-~D~~~l 208 (209)
....+|||||||+|.++..++++ ..+++++|+ +.+++.|++ ..++++++.+|+.+ +.+ . +|++++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 45679999999999999999997 467899999 788888774 24689999999865 333 3 899975
No 41
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.56 E-value=6.4e-07 Score=71.35 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=60.0
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS- 201 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p- 201 (209)
...+++.++ ..+..+|||||||+|..+..+++.. ++.+++.+|. +++++.+++ ...+++++.+|.++.++
T Consensus 65 ~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 65 VAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 344555555 5677899999999999999998885 4568999998 788887765 13579999999987543
Q ss_pred --CCcEEEe
Q 046346 202 --PADAVVL 208 (209)
Q Consensus 202 --~~D~~~l 208 (209)
.+|+|++
T Consensus 143 ~~~fD~I~~ 151 (212)
T PRK13942 143 NAPYDRIYV 151 (212)
T ss_pred CCCcCEEEE
Confidence 2899976
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.56 E-value=9.6e-07 Score=70.46 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCC
Q 046346 115 NNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLV 187 (209)
Q Consensus 115 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ 187 (209)
..++...|..........+++.+.....+..+|||||||+|.++..+++. ..+++++|. |.+++.|++ ...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~ 104 (219)
T TIGR02021 27 VSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAG 104 (219)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 34444444322222333344443311235789999999999999999886 457899998 788887764 125
Q ss_pred CeEEEEccCCCCCCCCcEEEe
Q 046346 188 NLKYVGGDMFKAISPADAVVL 208 (209)
Q Consensus 188 ri~~~~gD~~~~~p~~D~~~l 208 (209)
+++|..+|+.+....+|+++.
T Consensus 105 ~i~~~~~d~~~~~~~fD~ii~ 125 (219)
T TIGR02021 105 NVEFEVNDLLSLCGEFDIVVC 125 (219)
T ss_pred ceEEEECChhhCCCCcCEEEE
Confidence 899999998763344998874
No 43
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.56 E-value=5.9e-07 Score=72.29 Aligned_cols=65 Identities=26% Similarity=0.375 Sum_probs=56.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCC------CeEEEeec-hHHHhhccc--------CCCCeEEEEccCCC-CCCC--CcE
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPK------LECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK-AISP--ADA 205 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~------l~~~~~Dl-p~v~~~a~~--------~~~ri~~~~gD~~~-~~p~--~D~ 205 (209)
.-++|||+||||-++-.+++.-+. .+++++|+ |++++.+.+ ...|+.|+++|.-+ |+|. +|+
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~ 180 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDA 180 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCccee
Confidence 479999999999999999999888 78999999 899987664 24569999999977 7886 899
Q ss_pred EEe
Q 046346 206 VVL 208 (209)
Q Consensus 206 ~~l 208 (209)
|.+
T Consensus 181 yTi 183 (296)
T KOG1540|consen 181 YTI 183 (296)
T ss_pred EEE
Confidence 986
No 44
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.55 E-value=3.6e-07 Score=62.31 Aligned_cols=60 Identities=25% Similarity=0.332 Sum_probs=49.8
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346 148 VDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AISP--ADAVVL 208 (209)
Q Consensus 148 lDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~~ri~~~~gD~~~-~~p~--~D~~~l 208 (209)
||||||+|..+..++++ |..+++++|. +.+++.+++ ...++++..+|+.+ ++|. +|+++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccc
Confidence 79999999999999999 9999999999 677888776 35567899999987 6664 899875
No 45
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.55 E-value=4.9e-07 Score=74.64 Aligned_cols=65 Identities=18% Similarity=0.370 Sum_probs=54.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC---eEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKL---ECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVV 207 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l---~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~ 207 (209)
...+|||||||+|.++..+++.+|.. +++++|+ +.+++.|++...++++..+|..+ +++. +|+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEE
Confidence 45789999999999999999998864 6799999 78888887656789999999877 6653 89986
No 46
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.53 E-value=2.1e-07 Score=83.21 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=56.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP--ADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~--~D~~~l 208 (209)
..+|||||||+|.++..+++++|+.+++++|+ |.+++.|++ ..++++++.+|+++.++. +|+++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEE
Confidence 46899999999999999999999999999999 778887774 346899999999886653 899875
No 47
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.53 E-value=5.2e-07 Score=76.87 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=57.2
Q ss_pred HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCC-CcEE
Q 046346 133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISP-ADAV 206 (209)
Q Consensus 133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~-~D~~ 206 (209)
+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..-+.+++.+|.++..+. +|+|
T Consensus 188 Ll~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 188 LLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 344454 22345899999999999999999999999999999 677877764 122457788998876665 9999
Q ss_pred Ee
Q 046346 207 VL 208 (209)
Q Consensus 207 ~l 208 (209)
+.
T Consensus 266 vs 267 (342)
T PRK09489 266 IS 267 (342)
T ss_pred EE
Confidence 85
No 48
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.53 E-value=5.7e-07 Score=72.91 Aligned_cols=66 Identities=29% Similarity=0.482 Sum_probs=55.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP--ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~--~D~~~l 208 (209)
...+|+|+|||+|.++..+++.+|+.+++++|. +.+++.++. ..++++++.+|++++++. +|+++.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~ 160 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVS 160 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEE
Confidence 346899999999999999999999999999998 777777664 234799999999886643 899874
No 49
>PRK08317 hypothetical protein; Provisional
Probab=98.53 E-value=7.7e-07 Score=71.15 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=59.3
Q ss_pred HHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC--
Q 046346 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-- 202 (209)
Q Consensus 132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-- 202 (209)
.+++.++ ..+..+|||+|||+|.++..+++.+ |..+++++|+ +..++.+++ ...++++..+|+.+ +++.
T Consensus 10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 3445555 5667899999999999999999998 7889999999 666776654 24679999999876 5543
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|+++.
T Consensus 88 ~D~v~~ 93 (241)
T PRK08317 88 FDAVRS 93 (241)
T ss_pred ceEEEE
Confidence 899875
No 50
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.49 E-value=6.5e-07 Score=79.50 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=58.5
Q ss_pred HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC--C
Q 046346 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP--A 203 (209)
Q Consensus 132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~--~ 203 (209)
.+++.+. .....+|||||||+|..+..+++++ +.+++++|+ +.+++.|++ ...+++|+.+|+++ ++|. +
T Consensus 257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 3445454 4566899999999999999999877 779999999 677777653 34689999999987 5654 8
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|+|+.
T Consensus 334 D~I~s 338 (475)
T PLN02336 334 DVIYS 338 (475)
T ss_pred EEEEE
Confidence 99874
No 51
>PLN03075 nicotianamine synthase; Provisional
Probab=98.48 E-value=6.9e-07 Score=74.23 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=52.6
Q ss_pred CCCeEEEecCCccHHHH--HHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEEccCCCCC---CCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAK--AIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKAI---SPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~--~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~~~---p~~D~~~l 208 (209)
++++|+|||||+|-++. .+++.+|+.+++++|. |++++.|++ ..+|++|..+|..+.. ..+|+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 78999999999884433 3445789999999999 788887775 3578999999998733 24999986
No 52
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=8.3e-07 Score=73.38 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=60.1
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC-C
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP-A 203 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~-~ 203 (209)
+-+++.++ .....+|+|+|||.|.+++.+++.+|+.+.+.+|. ...++.|++ ..++.++...|.+++.+. +
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 44567776 44445999999999999999999999999999999 466777774 123336788899998776 9
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|+|+.
T Consensus 226 d~Iis 230 (300)
T COG2813 226 DLIIS 230 (300)
T ss_pred cEEEe
Confidence 99875
No 53
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.47 E-value=2.3e-06 Score=68.56 Aligned_cols=67 Identities=27% Similarity=0.275 Sum_probs=54.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-P-ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p-~-~D~~~l 208 (209)
.+..+|+|||||+|.++..+++.+| ..+++++|. +.+++.+++ ...+++++.+|+.+ +.+ . +|+|++
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~ 127 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTI 127 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEE
Confidence 3457999999999999999999998 789999999 677776664 24679999999987 333 3 899874
No 54
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.47 E-value=1.1e-06 Score=72.28 Aligned_cols=67 Identities=27% Similarity=0.430 Sum_probs=56.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-P-ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-~-~D~~~l 208 (209)
.+..+|+|+|||+|.++..+++.+|..+++++|+ +.+++.+++ ...+++++.+|++++.+ . +|+++.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~ 181 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVS 181 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEE
Confidence 4567999999999999999999999999999999 677776664 24689999999998765 3 899874
No 55
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.47 E-value=4.2e-08 Score=68.36 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=40.1
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCC---CeEEEEccCCCCCC--CCcEEEe
Q 046346 148 VDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLV---NLKYVGGDMFKAIS--PADAVVL 208 (209)
Q Consensus 148 lDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~---ri~~~~gD~~~~~p--~~D~~~l 208 (209)
||||||+|.++..+++++|..+.+++|+ |.+++.+++ ... ++++...|.++..+ .+|+|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehh
Confidence 7999999999999999999999999999 788877765 122 34555555555433 4999975
No 56
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.46 E-value=3.3e-07 Score=74.09 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=57.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CCC--CCcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AIS--PADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~p--~~D~~~l 208 (209)
.+...+|+|+|||+|.++..+++++++++++++++ +.+.+.|++ ..+||+++..|+-+ ..+ .+|+|+.
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34589999999999999999999999999999999 677777775 57899999999876 222 2788875
No 57
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.45 E-value=1e-06 Score=67.58 Aligned_cols=74 Identities=18% Similarity=0.365 Sum_probs=56.9
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCC--C
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP--A 203 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~--~ 203 (209)
..+++.++ .....++||||||+|.++..++++ ..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+. +
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 34556665 556679999999999999999998 467899999 567777664 24589999999987 4554 6
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|.++.
T Consensus 79 d~vi~ 83 (169)
T smart00650 79 YKVVG 83 (169)
T ss_pred CEEEE
Confidence 77753
No 58
>PRK06202 hypothetical protein; Provisional
Probab=98.45 E-value=2e-06 Score=69.29 Aligned_cols=67 Identities=24% Similarity=0.248 Sum_probs=49.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhcccC--CCCeEEEEccC--CCCCCC-CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDM--FKAISP-ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~----~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~--~~~~p~-~D~~~l 208 (209)
.+..+|||||||+|.++..|++. .|+.+++++|+ |.+++.|++. ..++++...+. +...+. +|+++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEE
Confidence 45689999999999999988764 56789999999 8899888752 24566655543 222233 899875
No 59
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.45 E-value=4.8e-07 Score=71.04 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=53.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---C-CCC--CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---A-ISP--ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~-~p~--~D~~~l 208 (209)
...++||||||+|.++..+++++|+..++++|+ +.+++.|++ ...+++++.+|+.+ . +|. +|.+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 457999999999999999999999999999999 677776653 23589999999865 1 342 677764
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.45 E-value=6e-07 Score=70.98 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=53.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC--C--CC-C-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A--IS-P-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~--~--~p-~-~D~~~l 208 (209)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ...+++++.+|+.+ + ++ . +|++++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 568999999999999999999999999999999 778877664 23689999999832 2 43 3 788864
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.44 E-value=1e-06 Score=68.12 Aligned_cols=64 Identities=25% Similarity=0.388 Sum_probs=52.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~-~D~~~l 208 (209)
...+|+|+|||+|.++..++++.+ +++.+|+ |.+++.+++ ...+++++.+|+++..+. +|+++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEE
Confidence 347899999999999999999987 8999998 788877764 234688999999875444 999875
No 62
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.43 E-value=5.6e-07 Score=64.32 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=53.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CCCC--CcEEEe
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AISP--ADAVVL 208 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~p~--~D~~~l 208 (209)
.+|+|+|||+|.++..+++++ ..+++++|+ |..++.++. ..+|++++.+|+++ +.+. +|+|+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 589999999999999999999 889999999 777777764 35789999999987 2433 899985
No 63
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.42 E-value=2e-06 Score=67.52 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=56.5
Q ss_pred HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---CCC-C
Q 046346 133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS-P 202 (209)
Q Consensus 133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~~p-~ 202 (209)
+++.++ .....+|||+|||+|.++..+++..|..+++.+|+ |.+++.+++ ...+++++.+|..+ .++ .
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 445554 45668999999999999999999999999999999 788887764 23579999999865 232 2
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|.+++
T Consensus 110 ~d~v~~ 115 (196)
T PRK07402 110 PDRVCI 115 (196)
T ss_pred CCEEEE
Confidence 566543
No 64
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.42 E-value=1.4e-06 Score=71.52 Aligned_cols=75 Identities=19% Similarity=0.344 Sum_probs=58.2
Q ss_pred hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCCC
Q 046346 129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISPA 203 (209)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~~ 203 (209)
....+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..++++++.+|+++ ++|.+
T Consensus 17 ~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~ 92 (258)
T PRK14896 17 VVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEF 92 (258)
T ss_pred HHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhc
Confidence 3455566555 5567899999999999999999994 47899998 677777664 24689999999987 66667
Q ss_pred cEEE
Q 046346 204 DAVV 207 (209)
Q Consensus 204 D~~~ 207 (209)
|.++
T Consensus 93 d~Vv 96 (258)
T PRK14896 93 NKVV 96 (258)
T ss_pred eEEE
Confidence 7765
No 65
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.41 E-value=6.5e-07 Score=69.74 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=53.9
Q ss_pred hccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCCCCCC--CcEEEeC
Q 046346 136 KCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAISP--ADAVVLK 209 (209)
Q Consensus 136 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~~~p~--~D~~~l~ 209 (209)
.++ -....+++|+|||.|.++..|+.++ -+.++.|. +..++.|++ ..++|+|+..|+-+.+|. ||+|+++
T Consensus 38 aLp--~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALP--RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHT--TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcC--ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 466 5677899999999999999999997 36788999 888998886 357899999999887775 9999875
No 66
>PHA03411 putative methyltransferase; Provisional
Probab=98.40 E-value=9.4e-07 Score=72.55 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=55.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCC-CC-CcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAI-SP-ADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~-p~-~D~~~l 208 (209)
..+|||+|||+|.++..++++.+..+++++|+ |.+++.+++...+++++.+|+++.. +. +|+|+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEE
Confidence 46999999999999999999998889999999 7888888865568999999998743 33 999875
No 67
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.38 E-value=1.4e-06 Score=72.04 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=51.7
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--CCCeEEEEccCCC
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDMFK 198 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~~~ 198 (209)
..+++.++ .....+|||||||+|.++..++++.+ +++++|. +.+++.+++. .++++++.+|+.+
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~ 98 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALK 98 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhc
Confidence 44555555 55668999999999999999999987 7888998 7778777642 3689999999987
No 68
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.38 E-value=1.7e-06 Score=74.53 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=52.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCC---CCCCC--CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMF---KAISP--ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~---~~~p~--~D~~~l 208 (209)
....+||||||+|.++..+++++|+..++++|+ +.++..+.+ ...+|.++.+|.. +.+|. .|.+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEE
Confidence 457999999999999999999999999999998 566655442 2467999999973 34553 777765
No 69
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.38 E-value=1.7e-06 Score=73.49 Aligned_cols=66 Identities=32% Similarity=0.400 Sum_probs=55.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--CCCeEEEEccCCC-CCCC--CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDMFK-AISP--ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~~~-~~p~--~D~~~l 208 (209)
...+|||||||+|.++..+++.+|..+++++|. +.+++.|++. ..+++++.+|+.+ +++. +|+|+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEE
Confidence 457999999999999999999999899999999 7888877752 3578999999876 5553 899875
No 70
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.37 E-value=9.3e-07 Score=72.23 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=53.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--CCCeEEEEccCCCCCC----C-CcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDMFKAIS----P-ADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~~~~~p----~-~D~~~l 208 (209)
..++||+|||+|.++..+++.+|..+++++|. |.+++.|++. ..+++++.+|+++.++ . +|+++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEE
Confidence 45899999999999999999999999999999 7888887751 2236889999987543 3 899875
No 71
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.36 E-value=2.8e-06 Score=67.40 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=58.3
Q ss_pred HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCC--CC
Q 046346 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PA 203 (209)
Q Consensus 132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p--~~ 203 (209)
.+++.+. ..+..+|||+|||+|..+..+++++|. .+++++|. +.+++.+++ ...+++++.+|+.+ +.+ .+
T Consensus 30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (223)
T TIGR01934 30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSF 107 (223)
T ss_pred HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcE
Confidence 3444444 346789999999999999999999997 78999999 677776664 34689999999987 343 28
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|++++
T Consensus 108 D~i~~ 112 (223)
T TIGR01934 108 DAVTI 112 (223)
T ss_pred EEEEE
Confidence 98864
No 72
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=3.1e-06 Score=69.71 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=60.5
Q ss_pred hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC
Q 046346 129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS 201 (209)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p 201 (209)
....+++.+. +.+..+|||||||-|.+++..+++| +.+++++++ ++..+.+++ ..++|++.-.|+-+-.+
T Consensus 60 k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 60 KLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 3456777787 8899999999999999999999999 999999999 555555543 45789999999865333
Q ss_pred CCcEEE
Q 046346 202 PADAVV 207 (209)
Q Consensus 202 ~~D~~~ 207 (209)
.+|-|+
T Consensus 137 ~fDrIv 142 (283)
T COG2230 137 PFDRIV 142 (283)
T ss_pred ccceee
Confidence 377664
No 73
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.34 E-value=2.2e-06 Score=67.34 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=53.5
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-C
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-A 203 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~ 203 (209)
..+++.++ .....+|||||||+|..+..++++ ..+++++|+ |.+++.+++ ..-++++...|+.. +++. +
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 34555555 345689999999999999999986 468999999 677776653 12247777888754 3444 8
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|+++.
T Consensus 96 D~I~~ 100 (195)
T TIGR00477 96 DFIFS 100 (195)
T ss_pred CEEEE
Confidence 98864
No 74
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.33 E-value=4.1e-06 Score=68.94 Aligned_cols=68 Identities=12% Similarity=0.212 Sum_probs=52.8
Q ss_pred cCCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhhcccC--------------------------
Q 046346 142 EGLNSLVDVGGGTGT----AAKAIAKAFP-----KLECTCFDL-PHVVNGLESD-------------------------- 185 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~----~~~~l~~~~P-----~l~~~~~Dl-p~v~~~a~~~-------------------------- 185 (209)
.+..+|+|+|||+|. +++.+++.+| +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 5677777766 578999999 7888887741
Q ss_pred ------CCCeEEEEccCCCC-CC-C-CcEEEeC
Q 046346 186 ------LVNLKYVGGDMFKA-IS-P-ADAVVLK 209 (209)
Q Consensus 186 ------~~ri~~~~gD~~~~-~p-~-~D~~~l~ 209 (209)
..+|+|..+|+.++ .| . +|+|+.+
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~cr 210 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCR 210 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEec
Confidence 14799999999984 33 2 9999863
No 75
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.30 E-value=4.7e-06 Score=66.65 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=50.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCCCcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~~D~~~l 208 (209)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.|++ ..+++++..+|+-..-..+|+++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEE
Confidence 4567999999999999999998865 4899999 788887764 125899999994322233898864
No 76
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.29 E-value=3.3e-06 Score=71.42 Aligned_cols=65 Identities=17% Similarity=0.080 Sum_probs=49.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhcc---c---CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HVVNGLE---S---DLVNLKYVGGDMFK-AISP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp-~v~~~a~---~---~~~ri~~~~gD~~~-~~p~-~D~~~l 208 (209)
...+|||||||+|.++..+++.+|. +++++|.. .++..++ . ...+|+++.+|+.+ +.+. +|+|+.
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEE
Confidence 4589999999999999999999877 59999973 3443322 1 24589999999865 4444 899874
No 77
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.29 E-value=3.1e-06 Score=65.03 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=51.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC--CCC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA--ISP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~--~p~-~D~~~l 208 (209)
.+.+|||+|||+|+++..|++.-=+.+.+++|- +..++.|+. ..+.|+|+..|+++| .++ +|+++=
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEee
Confidence 345999999999999999999976555677887 566665553 456699999999995 344 888863
No 78
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.28 E-value=4.7e-06 Score=65.55 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=54.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CC-CCCcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AI-SPADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~-p~~D~~~l 208 (209)
.....+|+|+|||+|.++..+++.. |..+++.+|+ +.+++.+++ ..++++++.+|+.+ .. +.+|++++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5567899999999999999998874 6789999999 788877653 24689999999875 23 23899875
No 79
>PHA03412 putative methyltransferase; Provisional
Probab=98.28 E-value=2.3e-06 Score=68.84 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=54.6
Q ss_pred CCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP-ADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~-~D~~~l 208 (209)
..+|||+|||+|.++..+++++ +..+++++|+ +.+++.|++...+++++.+|+.. +++. +|+|+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIs 120 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAIS 120 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEE
Confidence 5799999999999999999986 4678999999 78888888656679999999986 3443 999874
No 80
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.28 E-value=1.7e-06 Score=67.23 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=50.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCC---CCC--CcEEEeC
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA---ISP--ADAVVLK 209 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~---~p~--~D~~~l~ 209 (209)
++..+|||+|||.|.++..|.+. .+.++.++|+ ++-+..+- ...++.+.+|.-+. +|. +|.++|+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv--~rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV--ARGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH--HcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 46799999999999999888775 7999999998 33333332 46678899998773 554 8999885
No 81
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.26 E-value=8.5e-06 Score=64.68 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=54.6
Q ss_pred HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC---C
Q 046346 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P 202 (209)
Q Consensus 132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p---~ 202 (209)
.++..+. ..+..+|||||||+|..+..+++... +++.+|. +.+++.+++ ...+++++.+|+++.++ .
T Consensus 69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 3444444 45678999999999999998887764 6888888 677776664 13469999999987544 2
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|++++
T Consensus 145 fD~I~~ 150 (212)
T PRK00312 145 FDRILV 150 (212)
T ss_pred cCEEEE
Confidence 999875
No 82
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.25 E-value=3.9e-06 Score=69.35 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=51.0
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC-
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS- 201 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p- 201 (209)
...+++.++ ..+..+|||||||-|.++..++++| +.+++++.+ ++..+.+++ +.+++++...|+.+ ++
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~ 126 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPG 126 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCC
Confidence 455667776 7788999999999999999999999 889999998 444554432 56899999999865 44
Q ss_pred CCcEEE
Q 046346 202 PADAVV 207 (209)
Q Consensus 202 ~~D~~~ 207 (209)
.+|.|+
T Consensus 127 ~fD~Iv 132 (273)
T PF02353_consen 127 KFDRIV 132 (273)
T ss_dssp S-SEEE
T ss_pred CCCEEE
Confidence 488875
No 83
>PLN02366 spermidine synthase
Probab=98.22 E-value=3.6e-06 Score=70.71 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=53.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCC-C-Cc
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS-P-AD 204 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p-~-~D 204 (209)
.+++++||+||||.|..+.++++. |. .+++++|+ +.|++.+++ ..+|++++.+|.++ ..| . +|
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 356899999999999999999865 65 57899999 668888875 14699999999754 443 3 99
Q ss_pred EEEe
Q 046346 205 AVVL 208 (209)
Q Consensus 205 ~~~l 208 (209)
+|++
T Consensus 168 vIi~ 171 (308)
T PLN02366 168 AIIV 171 (308)
T ss_pred EEEE
Confidence 9985
No 84
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.22 E-value=6.3e-06 Score=68.60 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=50.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~D~~~l 208 (209)
....+|||||||+|..+..++++ ..+++++|. +.+++.+++ ..-++++..+|+.+ +++. +|+|+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEE
Confidence 34569999999999999999986 578999999 677776653 23378888999876 3454 999874
No 85
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.21 E-value=6.4e-06 Score=67.29 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=54.6
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCCCc
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISPAD 204 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~~D 204 (209)
...+++.++ ..+..+|+|||||+|.++..++++++. ++++|. +.+++.++. ..++++++.+|+.+ +++.+|
T Consensus 18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 345566665 566789999999999999999999975 777888 666766654 24789999999987 454455
No 86
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.20 E-value=5.8e-06 Score=68.13 Aligned_cols=68 Identities=16% Similarity=0.353 Sum_probs=54.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP--ADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~--~D~~~l 208 (209)
.....+|||||||+|..+..+++.. |..+++++|+ +.+++.|++ ..+++++..+|+.+ +++. +|+++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 4567899999999999988877764 6678999999 788888775 23689999999876 5553 898874
No 87
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.19 E-value=3.7e-06 Score=71.05 Aligned_cols=63 Identities=22% Similarity=0.183 Sum_probs=50.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-P-ADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p-~-~D~~~l 208 (209)
..+|||||||+|.++..+++ ++.+++++|. +.+++.|+. ...+|+++.+|+.+ +.+ . +|+++.
T Consensus 132 g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEE
Confidence 46899999999999998886 4678999999 788887763 23589999999855 333 3 999974
No 88
>PLN02672 methionine S-methyltransferase
Probab=98.19 E-value=3e-06 Score=81.09 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=53.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------------------CCCeEEEEccCCCCCC
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------------------LVNLKYVGGDMFKAIS 201 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~------------------~~ri~~~~gD~~~~~p 201 (209)
..+|+|||||+|.+++.+++++|+.+++.+|+ |.+++.|++ . .+||+|+.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 36899999999999999999999999999999 777776643 1 2589999999998653
Q ss_pred ----CCcEEE
Q 046346 202 ----PADAVV 207 (209)
Q Consensus 202 ----~~D~~~ 207 (209)
.+|+|+
T Consensus 199 ~~~~~fDlIV 208 (1082)
T PLN02672 199 DNNIELDRIV 208 (1082)
T ss_pred ccCCceEEEE
Confidence 379886
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=98.19 E-value=8.2e-06 Score=63.07 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=52.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCC-eEEEEccCCCCCCC--CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVN-LKYVGGDMFKAISP--ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~r-i~~~~gD~~~~~p~--~D~~~l 208 (209)
.+..++||+|||+|.++..++++ ..+++++|+ |.+++.+++ ..++ ++++.+|+.++++. +|+++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~ 96 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILF 96 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEE
Confidence 45678999999999999999998 578999999 677777653 1233 89999999886654 898874
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=98.19 E-value=6.1e-06 Score=66.11 Aligned_cols=67 Identities=25% Similarity=0.238 Sum_probs=51.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISP--ADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~--~D~~~l 208 (209)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+.++. +|+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEE
Confidence 344579999999999999999886 3358899999 677776654 234688999999876553 899875
No 91
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.18 E-value=8.6e-06 Score=68.04 Aligned_cols=74 Identities=19% Similarity=0.393 Sum_probs=56.9
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS 201 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p 201 (209)
...+++... ..+..+|+|||||+|.++..++++.. +++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 25 ~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 25 LDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 345566555 55678999999999999999999854 5888998 677776654 24789999999987 566
Q ss_pred CCcEEE
Q 046346 202 PADAVV 207 (209)
Q Consensus 202 ~~D~~~ 207 (209)
.+|+++
T Consensus 101 ~~d~Vv 106 (294)
T PTZ00338 101 YFDVCV 106 (294)
T ss_pred ccCEEE
Confidence 677765
No 92
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.18 E-value=1.2e-05 Score=67.91 Aligned_cols=74 Identities=16% Similarity=0.353 Sum_probs=56.6
Q ss_pred HHHhccccccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC---C
Q 046346 133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P 202 (209)
Q Consensus 133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p---~ 202 (209)
+++.++ ..+..+|||||||+|.++..+++..+. -+++++|. +++++.|++ ..++++++.+|..+..+ .
T Consensus 72 ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 72 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 344444 456689999999999999999999875 46889998 677777664 23579999999876433 3
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|++++
T Consensus 150 fD~Ii~ 155 (322)
T PRK13943 150 YDVIFV 155 (322)
T ss_pred ccEEEE
Confidence 899875
No 93
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.17 E-value=5.7e-06 Score=64.80 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC---CCCC--CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AISP--ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~---~~p~--~D~~~l 208 (209)
...+|||||||+|.++..+++. ...+++++|. +++++.++. .+++++.+|+.+ +++. +|++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~--~~~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA--RGVNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH--cCCeEEEEEhhhcccccCCCCcCEEEE
Confidence 4579999999999999988876 4567889998 677777662 468889999865 2432 899986
No 94
>PRK01581 speE spermidine synthase; Validated
Probab=98.15 E-value=5e-06 Score=70.86 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=55.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------CCCCeEEEEccCCC---CCCC-C
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFK---AISP-A 203 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------------~~~ri~~~~gD~~~---~~p~-~ 203 (209)
..++++||+||||.|..+.++++..|..+++++|+ |+|++.|++ ..+|++++.+|..+ ..+. +
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45678999999999999999998655678999999 788988884 25799999999876 2333 8
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|+|++
T Consensus 228 DVIIv 232 (374)
T PRK01581 228 DVIII 232 (374)
T ss_pred cEEEE
Confidence 99986
No 95
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.15 E-value=9.4e-06 Score=72.13 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=56.9
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC---CCCC
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK---AISP 202 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~---~~p~ 202 (209)
.+.+++.++ ..+..+|||||||+|.++..+++.+. +++++|. +.+++.++. ..++++++.+|+.+ ++|.
T Consensus 26 ~~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 455566665 34567999999999999999999864 6889998 777776653 24689999999964 4453
Q ss_pred --CcEEEe
Q 046346 203 --ADAVVL 208 (209)
Q Consensus 203 --~D~~~l 208 (209)
+|+|+.
T Consensus 102 ~~fD~I~~ 109 (475)
T PLN02336 102 GSVDLIFS 109 (475)
T ss_pred CCEEEEeh
Confidence 899875
No 96
>PRK00811 spermidine synthase; Provisional
Probab=98.13 E-value=5.2e-06 Score=68.99 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=54.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------CCCCeEEEEccCCCC---CCC-CcEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFKA---ISP-ADAV 206 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~~ri~~~~gD~~~~---~p~-~D~~ 206 (209)
+++++||+||||+|..+..+++..+..+++++|+ |.+++.|++ ..+|++++.+|..+- -+. +|+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4678999999999999999997655668999999 788888875 156899999998752 123 9999
Q ss_pred Ee
Q 046346 207 VL 208 (209)
Q Consensus 207 ~l 208 (209)
++
T Consensus 155 i~ 156 (283)
T PRK00811 155 IV 156 (283)
T ss_pred EE
Confidence 85
No 97
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.12 E-value=1.1e-05 Score=64.09 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=57.4
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP 202 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~ 202 (209)
...+++.++ ..+..+|||||+|+|..+..+++.. |.-+++.+|. |...+.|++ ...+|+++.+|-...+|.
T Consensus 61 ~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 61 VARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 345566666 6778999999999999999999885 4446888897 777777775 245899999999886664
Q ss_pred ---CcEEEe
Q 046346 203 ---ADAVVL 208 (209)
Q Consensus 203 ---~D~~~l 208 (209)
+|.|++
T Consensus 139 ~apfD~I~v 147 (209)
T PF01135_consen 139 EAPFDRIIV 147 (209)
T ss_dssp G-SEEEEEE
T ss_pred CCCcCEEEE
Confidence 899875
No 98
>PRK04266 fibrillarin; Provisional
Probab=98.12 E-value=1.4e-05 Score=64.31 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=52.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCCC-----CCC-CcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA-----ISP-ADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~~-----~p~-~D~~~l 208 (209)
..+..+|+|+|||+|.++..+++..+.-+++++|+ +++++.+.+ ...+|.++.+|..++ ++. +|+++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE
Confidence 55678999999999999999999998668999999 666653321 236799999998653 233 888863
No 99
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.10 E-value=1.7e-05 Score=66.89 Aligned_cols=74 Identities=14% Similarity=0.001 Sum_probs=51.6
Q ss_pred HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcc---c---CCCCeEEEEccCCC-CC-CC
Q 046346 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE---S---DLVNLKYVGGDMFK-AI-SP 202 (209)
Q Consensus 132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~---~---~~~ri~~~~gD~~~-~~-p~ 202 (209)
.++..+. .....+|+|||||+|.++..+++.++. +++++|. +.++..++ + ...++.+..+|+-+ +. +.
T Consensus 112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3444443 334589999999999999999998775 7899997 44554322 1 24678888888754 22 24
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|+|+.
T Consensus 189 FD~V~s 194 (314)
T TIGR00452 189 FDTVFS 194 (314)
T ss_pred cCEEEE
Confidence 899874
No 100
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.10 E-value=1.7e-05 Score=66.05 Aligned_cols=65 Identities=23% Similarity=0.217 Sum_probs=48.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~-~D~~~l 208 (209)
+..+|||||||+|.++..+++. +..+++++|+ |.+++.|++ ...++.+..+|.....+. +|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEE
Confidence 4589999999999999988865 4458999999 677777764 345677777764333333 899874
No 101
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.09 E-value=2.5e-05 Score=67.67 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--CCCeEEEEccCCCCCCC-CcEE
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDMFKAISP-ADAV 206 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~~~~~p~-~D~~ 206 (209)
..+++.+. ..+..+|||||||+|.++..+++++ +.+++++|+ +++++.|++. ...+++...|+.+ ++. +|++
T Consensus 157 ~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~-l~~~fD~I 232 (383)
T PRK11705 157 DLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD-LNGQFDRI 232 (383)
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh-cCCCCCEE
Confidence 34455555 5667899999999999999999876 568999999 7888877652 2357888888754 343 8988
Q ss_pred E
Q 046346 207 V 207 (209)
Q Consensus 207 ~ 207 (209)
+
T Consensus 233 v 233 (383)
T PRK11705 233 V 233 (383)
T ss_pred E
Confidence 6
No 102
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.09 E-value=2.1e-05 Score=61.53 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=50.9
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-C
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-A 203 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~ 203 (209)
+.+++.++ .-...++||+|||.|..+.-|+++ +..++.+|. +..++.+++ ..-.|+....|+.+ .+|. +
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 34556666 456789999999999999999999 667899999 445554432 34459999999977 5665 8
Q ss_pred cEEE
Q 046346 204 DAVV 207 (209)
Q Consensus 204 D~~~ 207 (209)
|+|+
T Consensus 96 D~I~ 99 (192)
T PF03848_consen 96 DFIV 99 (192)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 9885
No 103
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.08 E-value=2.3e-05 Score=62.49 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=49.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEEccCCC-C---
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFK-A--- 199 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------~~~ri~~~~gD~~~-~--- 199 (209)
....++||+|||.|..+..|+++ +.+++++|+ |..++.+.. ...+|+++.+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 35579999999999999999987 677999999 666665321 13579999999998 2
Q ss_pred CCCCcEEE
Q 046346 200 ISPADAVV 207 (209)
Q Consensus 200 ~p~~D~~~ 207 (209)
.+.+|+++
T Consensus 111 ~~~fD~i~ 118 (213)
T TIGR03840 111 LGPVDAVY 118 (213)
T ss_pred CCCcCEEE
Confidence 23378775
No 104
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.06 E-value=1e-05 Score=71.38 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=51.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC-----CC-C-CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA-----IS-P-ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~-----~p-~-~D~~~l 208 (209)
.+..+|||+|||+|.++..++++. .+++++|. +++++.|++ ..++++|+.+|+.+. ++ . +|++++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 455799999999999999999986 57899999 778887764 235799999998652 22 2 899986
No 105
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=2.5e-05 Score=63.62 Aligned_cols=66 Identities=15% Similarity=0.267 Sum_probs=50.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEE----EccCCCCCC---C-CcEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYV----GGDMFKAIS---P-ADAV 206 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~----~gD~~~~~p---~-~D~~ 206 (209)
.....++|+|||+|.++..++...|+.+++..|. +.++..|.+ +.+|+..+ ..|.+.+.| + .|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999999999999999999999 455655443 57888877 556666543 2 5665
Q ss_pred E
Q 046346 207 V 207 (209)
Q Consensus 207 ~ 207 (209)
+
T Consensus 227 v 227 (328)
T KOG2904|consen 227 V 227 (328)
T ss_pred e
Confidence 4
No 106
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.02 E-value=2.2e-05 Score=65.80 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=46.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc----C--CCCeEEEEccCCC
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES----D--LVNLKYVGGDMFK 198 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~----~--~~ri~~~~gD~~~ 198 (209)
+..+|||+|||+|..+..|+++.+ ..+++.+|+ +++++.+++ . ..+|.++.+||.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 457899999999999999999998 688999999 677777653 1 2357789999987
No 107
>PRK03612 spermidine synthase; Provisional
Probab=98.02 E-value=1.3e-05 Score=72.16 Aligned_cols=66 Identities=24% Similarity=0.456 Sum_probs=54.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc------------CCCCeEEEEccCCC---CCCC-C
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFK---AISP-A 203 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~------------~~~ri~~~~gD~~~---~~p~-~ 203 (209)
+++++|+|||||+|..+.++++ +|. .+++++|+ |++++.+++ ..+|++++.+|.++ ..+. +
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999997 566 79999999 899998875 13699999999876 2344 9
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|+|++
T Consensus 375 DvIi~ 379 (521)
T PRK03612 375 DVIIV 379 (521)
T ss_pred CEEEE
Confidence 99985
No 108
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.02 E-value=3.8e-05 Score=61.07 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=48.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEEccCCCC---------CCC--CcEEE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA---------ISP--ADAVV 207 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~---------~p~--~D~~~ 207 (209)
+.+..+|||||||+|.++..++++. |..+++++|+.++. ...+++++.+|+.+. ++. +|+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~ 122 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVM 122 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEe
Confidence 3556799999999999999999987 45689999996632 134689999999873 332 88886
No 109
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.01 E-value=1.9e-05 Score=66.51 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=49.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC----------CCCeEEEEccCCCCCCC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD----------LVNLKYVGGDMFKAISP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----------~~ri~~~~gD~~~~~p~-~D~~~l 208 (209)
...+|||||||+|.++..++++ +.+++++|+ +.+++.|++. ..+++|..+|+.+ ++. +|+|+.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEE
Confidence 3579999999999999999987 568999999 6788877641 2468899999743 344 898864
No 110
>PRK04148 hypothetical protein; Provisional
Probab=98.01 E-value=2.9e-05 Score=57.15 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=51.2
Q ss_pred HHHHhccccccCCCeEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC----CCcE
Q 046346 132 VMIQKCKNVFEGLNSLVDVGGGTGT-AAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS----PADA 205 (209)
Q Consensus 132 ~~~~~~~~~~~~~~~vlDvGgG~G~-~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p----~~D~ 205 (209)
.+.+.+. .....+++|||||+|. ++..|.+. +..+++.|. |..++.+++ ..++++.+|.|++-+ .+|+
T Consensus 7 ~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 7 FIAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred HHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCCHHHHhcCCE
Confidence 3444444 2234789999999996 88888865 568999999 777777763 346889999999643 2788
Q ss_pred EE
Q 046346 206 VV 207 (209)
Q Consensus 206 ~~ 207 (209)
++
T Consensus 81 iy 82 (134)
T PRK04148 81 IY 82 (134)
T ss_pred EE
Confidence 75
No 111
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=2.4e-05 Score=60.54 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=50.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~~D~~~l 208 (209)
..++|+|+|||||.++++.+-..|. +++++|+ |+.++.+++ +.++|.|+..|..+--..+|.++|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEE
Confidence 4578999999999999998887665 6788888 788887764 567999999998653333666654
No 112
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.99 E-value=2.3e-05 Score=65.42 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=43.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC--CCcEEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PADAVV 207 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p--~~D~~~ 207 (209)
.+..+|||||||||.++++.++.... +++.+|+ |..++.|++ ..+++... ...+.+ .+|+|+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDLVEGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCTCCS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---EecccccccCCEEE
Confidence 45579999999999999999988543 7899999 777777764 35577552 122333 389886
No 113
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.98 E-value=2.7e-05 Score=63.58 Aligned_cols=60 Identities=32% Similarity=0.403 Sum_probs=43.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCCCcEEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPADAVV 207 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~~D~~~ 207 (209)
....+|+|||||+|.++..+++..+. +++++|+ |.+++.|++ ..+++.+..+|. .+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEE
Confidence 45689999999999999988776554 6899999 777877764 224455444432 367765
No 114
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.97 E-value=4.8e-05 Score=61.54 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=55.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC---------CCC
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI---------SPA 203 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~---------p~~ 203 (209)
..++++|||||||+|.-+..+++..| +.+++.+|. |+.++.|++ ..++|+++.||..+-+ +.+
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44689999999999999999998865 679999999 677777764 3579999999997621 239
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|++++
T Consensus 146 D~Vfi 150 (234)
T PLN02781 146 DFAFV 150 (234)
T ss_pred CEEEE
Confidence 99875
No 115
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.96 E-value=2.2e-05 Score=66.29 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=50.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC--C-CC-CCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A-IS-PADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~--~-~p-~~D~~~l 208 (209)
...+|||+|||+|.++..++++ ..+++++|. +.+++.|++ ..++++|+.+|+.+ . .. .+|++++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 3589999999999999999985 468999999 788877764 13579999999865 1 22 3899876
No 116
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.94 E-value=2.9e-05 Score=64.74 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=59.8
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-C--CCCeEEEEccCCC--C-C--
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-D--LVNLKYVGGDMFK--A-I-- 200 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-~--~~ri~~~~gD~~~--~-~-- 200 (209)
..+++.+. ..+...+||.+||.|.++..+++++| +.+++++|. |++++.|++ + .+|++++.+||-+ . +
T Consensus 9 ~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 9 DEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 45566554 34557999999999999999999996 789999999 888888875 2 3699999999975 1 2
Q ss_pred --CCCcEEEe
Q 046346 201 --SPADAVVL 208 (209)
Q Consensus 201 --p~~D~~~l 208 (209)
+.+|.+++
T Consensus 87 ~~~~vDgIl~ 96 (296)
T PRK00050 87 GLGKVDGILL 96 (296)
T ss_pred CCCccCEEEE
Confidence 24788775
No 117
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.92 E-value=3.6e-05 Score=52.29 Aligned_cols=62 Identities=26% Similarity=0.316 Sum_probs=49.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCC---CC-CcEEEe
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---SP-ADAVVL 208 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~---p~-~D~~~l 208 (209)
+++|+|||.|..+..+++ .+..+.+++|. +..++.+++ ...++++..+|+.+.. +. +|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEE
Confidence 589999999999999998 77889999998 455555541 3568999999998843 23 898875
No 118
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.91 E-value=3.9e-05 Score=60.36 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=42.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK 198 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~ 198 (209)
..+||||||.|.++..+++++|+..++++|+ ...+..+.. ...++.++.+|...
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~ 78 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE 78 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence 4999999999999999999999999999998 344433321 46789999998765
No 119
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.90 E-value=3.9e-05 Score=67.43 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=56.8
Q ss_pred HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCC---C-CC-
Q 046346 133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---I-SP- 202 (209)
Q Consensus 133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~---~-p~- 202 (209)
++..++ .....+|||+|||+|..+..+++..++.+++.+|+ +.+++.+++ ..-+++++.+|..+. . +.
T Consensus 236 ~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 334444 34568999999999999999999998889999999 777777664 233578999999762 2 23
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|.|++
T Consensus 314 fD~Vl~ 319 (427)
T PRK10901 314 FDRILL 319 (427)
T ss_pred CCEEEE
Confidence 899875
No 120
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.90 E-value=7.8e-05 Score=59.66 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=49.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEEccCCCCC---
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFKAI--- 200 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------~~~ri~~~~gD~~~~~--- 200 (209)
....+|||+|||.|..+..|+++ +.+++++|+ |..++.+.. ...+|++..+|+++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 34579999999999999999986 778999999 566665421 1368999999999832
Q ss_pred -CCCcEEE
Q 046346 201 -SPADAVV 207 (209)
Q Consensus 201 -p~~D~~~ 207 (209)
+.+|+++
T Consensus 114 ~~~fd~v~ 121 (218)
T PRK13255 114 LADVDAVY 121 (218)
T ss_pred CCCeeEEE
Confidence 3368776
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.90 E-value=3.5e-05 Score=68.00 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=54.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---CCC-CcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---ISP-ADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~p~-~D~~~l 208 (209)
..+..+|||+|||+|..+..+++.. |..+++.+|+ +..++.+++ ...+|+++.+|+.+. ++. +|+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEE
Confidence 3456899999999999999999987 6789999999 677776654 124599999999762 344 899975
No 122
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.87 E-value=8.3e-05 Score=60.60 Aligned_cols=75 Identities=23% Similarity=0.409 Sum_probs=58.0
Q ss_pred hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CC
Q 046346 129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AI 200 (209)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~ 200 (209)
....++..-+ ......||+||.|||.++..++++. .+++.+++ |.++....+ .....+.+.|||++ ++
T Consensus 46 v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 3455666555 6778999999999999999999994 45777777 666554332 35789999999998 89
Q ss_pred CCCcEEE
Q 046346 201 SPADAVV 207 (209)
Q Consensus 201 p~~D~~~ 207 (209)
|.+|.++
T Consensus 122 P~fd~cV 128 (315)
T KOG0820|consen 122 PRFDGCV 128 (315)
T ss_pred cccceee
Confidence 9888765
No 123
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.85 E-value=4.5e-05 Score=62.95 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=53.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAVV 207 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~~ 207 (209)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ ..+|++++.+|.++ ..+. +|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999998776778999999 678887765 13689999999765 2233 89987
Q ss_pred e
Q 046346 208 L 208 (209)
Q Consensus 208 l 208 (209)
+
T Consensus 151 ~ 151 (270)
T TIGR00417 151 V 151 (270)
T ss_pred E
Confidence 5
No 124
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00015 Score=57.26 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=59.0
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC--
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP-- 202 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~-- 202 (209)
..+++.+. .....+||+||||+|..+.-+++--- +++.+++ ++..+.|++ ...+|.+..+|-...+|.
T Consensus 62 A~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 62 ARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 44556666 67789999999999999999988866 7888888 666777765 234699999999998775
Q ss_pred -CcEEEe
Q 046346 203 -ADAVVL 208 (209)
Q Consensus 203 -~D~~~l 208 (209)
||.|+.
T Consensus 138 PyD~I~V 144 (209)
T COG2518 138 PYDRIIV 144 (209)
T ss_pred CcCEEEE
Confidence 899875
No 125
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=3.9e-05 Score=63.78 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=38.5
Q ss_pred HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346 133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 184 (209)
Q Consensus 133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~ 184 (209)
.++.++....+..+++|||||||.++++.++-... +++++|+ |..++.|++
T Consensus 152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARE 203 (300)
T ss_pred HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHH
Confidence 34444433457899999999999999998887433 6888998 666777764
No 126
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.83 E-value=5.9e-05 Score=58.75 Aligned_cols=63 Identities=17% Similarity=0.334 Sum_probs=48.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEEccCCCC---------CCC--CcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA---------ISP--ADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~---------~p~--~D~~~l 208 (209)
..+..+|||+|||+|.++..+++++ +..+++++|+.+.. ...+++++.+|+.++ .+. +|+++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 3567899999999999999999987 66789999996533 135688899998752 232 898874
No 127
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.82 E-value=3.8e-05 Score=60.59 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=49.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCC---C-CCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S-PADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~---p-~~D~~~l 208 (209)
...+|||+|||+|.++.+++.+.. .+++.+|. +.+++.+++ ...+++++.+|+++.+ . .+|++++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~ 127 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFV 127 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEE
Confidence 357999999999999998766664 58999998 677766654 1357999999987633 2 2899986
No 128
>PLN02823 spermine synthase
Probab=97.81 E-value=5.4e-05 Score=64.37 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=55.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAVV 207 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~~ 207 (209)
+.+++||.||||.|..+.++++..+..+++++|+ |.+++.|++ ..+|++++.+|.++ ..+. +|+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4678999999999999999998777778999999 889998885 14799999999776 2333 99998
Q ss_pred e
Q 046346 208 L 208 (209)
Q Consensus 208 l 208 (209)
+
T Consensus 182 ~ 182 (336)
T PLN02823 182 G 182 (336)
T ss_pred e
Confidence 6
No 129
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.80 E-value=5.9e-05 Score=62.53 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=58.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAV 206 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~ 206 (209)
.+.+++||-||||.|..++++++..|.-+++++|+ |.|++.+++ ..+|++.+.+|-++ .-+. +|+|
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 45568999999999999999999999999999999 899998886 25899999999776 4454 9999
Q ss_pred Ee
Q 046346 207 VL 208 (209)
Q Consensus 207 ~l 208 (209)
++
T Consensus 154 i~ 155 (282)
T COG0421 154 IV 155 (282)
T ss_pred EE
Confidence 85
No 130
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.78 E-value=7.1e-05 Score=63.16 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=50.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEE----ccCCCCC--C--CCcEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVG----GDMFKAI--S--PADAV 206 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~----gD~~~~~--p--~~D~~ 206 (209)
...++||||||+|.+...++.+.|+.++++.|+ |.+++.|+. +.+||++.. .++++.. + .+|++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 357999999999999999999999999999999 777877764 346888754 3455532 2 28888
Q ss_pred Ee
Q 046346 207 VL 208 (209)
Q Consensus 207 ~l 208 (209)
+-
T Consensus 194 vc 195 (321)
T PRK11727 194 LC 195 (321)
T ss_pred Ee
Confidence 63
No 131
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.78 E-value=2.6e-05 Score=63.17 Aligned_cols=62 Identities=26% Similarity=0.262 Sum_probs=49.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CC----CCeEEEEccCCCCCCCCcEEEe
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DL----VNLKYVGGDMFKAISPADAVVL 208 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~----~ri~~~~gD~~~~~p~~D~~~l 208 (209)
.+|||||||.|.++.-|++.. ..+++.|. +.+++.|++ +. -|+++...|...-.+.||+++-
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeee
Confidence 679999999999999999996 56788998 788888874 12 2688888888655555998863
No 132
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.71 E-value=0.00013 Score=54.60 Aligned_cols=39 Identities=31% Similarity=0.483 Sum_probs=32.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhh
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG 181 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~ 181 (209)
.....+|||||||+|.++..+++..+ +++++|. +.+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh
Confidence 35678999999999999999977755 8999999 566654
No 133
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.71 E-value=7.8e-05 Score=64.39 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=49.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---C-CCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I-SPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~-p~~D~~~l 208 (209)
...+|+|+|||+|.++..++.+ ..+++++|. +.+++.|++ ..++++|+.+|+.+. . ..+|++++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 3479999999999999999964 467999998 777777664 134899999998652 2 23898876
No 134
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=97.69 E-value=2.6e-05 Score=47.64 Aligned_cols=29 Identities=52% Similarity=1.076 Sum_probs=25.9
Q ss_pred HHHHHHHHcCchhHhhhCC-CCCCHHHHHH
Q 046346 30 MTLKCSIQLGIPDIINKHG-KPMTLNELQK 58 (209)
Q Consensus 30 ~~l~~a~~lglfd~L~~~g-~~~t~~eLA~ 58 (209)
.+|++|++|||||.|...| +|+|++||+.
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~ 30 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAA 30 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHH
Confidence 4799999999999999986 8999999998
No 135
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.68 E-value=0.00025 Score=56.94 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=47.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCC---CCC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---ISP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~---~p~-~D~~~l 208 (209)
+..+|||||||+|.++..+++. ..++++.|. +..++.+++ ...+++++.+|+.+- .+. +|++++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEE
Confidence 5679999999999999999886 457899998 566666653 234678888887541 223 899875
No 136
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.67 E-value=7.6e-05 Score=65.63 Aligned_cols=66 Identities=21% Similarity=0.387 Sum_probs=51.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---C---CC-CcEEE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I---SP-ADAVV 207 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~---p~-~D~~~ 207 (209)
..+..+|+|+|||+|.++..+++... +++.+|. +.+++.|++ ...+++|+.+|+.+. + .. +|+++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 44567999999999999999998753 6899999 788887774 236899999998641 2 12 79988
Q ss_pred e
Q 046346 208 L 208 (209)
Q Consensus 208 l 208 (209)
+
T Consensus 368 ~ 368 (431)
T TIGR00479 368 L 368 (431)
T ss_pred E
Confidence 6
No 137
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.65 E-value=0.00028 Score=59.92 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=50.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-P-ADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p-~-~D~~~l 208 (209)
+.+..+|+|+|||+|.++.+.+.. ..+++++|+ +.++..++. ....+++..+|+.+ +++ . +|+++.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~ 254 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT 254 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence 456779999999999999887664 678899999 677776663 12348899999987 554 2 899875
No 138
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.65 E-value=6.6e-05 Score=59.48 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=54.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC-------C--CCC
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA-------I--SPA 203 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~-------~--p~~ 203 (209)
..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++ ..+||+++.||..+- - ..+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45789999999999999999999987 579999999 677777764 467999999998751 1 238
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|++++
T Consensus 123 D~VFi 127 (205)
T PF01596_consen 123 DFVFI 127 (205)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99986
No 139
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.63 E-value=5.9e-05 Score=60.49 Aligned_cols=63 Identities=22% Similarity=0.195 Sum_probs=45.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC---CCCCCcEEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK---AISPADAVV 207 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~---~~p~~D~~~ 207 (209)
...+|||||||-|.++..+++.. .++++.|+ +..|+.|+. ..-.|++.+....+ ....||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEE
Confidence 46899999999999999999997 88999999 678888773 12224455544433 223488875
No 140
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.63 E-value=0.00012 Score=61.56 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=53.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCC-C-CcEEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-P-ADAVV 207 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p-~-~D~~~ 207 (209)
..++|+|||||+|.++.-.+++. ..++..+|-.++++.|++ ..+.|+++.|...+ ++| . .|+++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIv 132 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIV 132 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEe
Confidence 46999999999999999999998 567899999888877765 46789999998877 677 3 78875
No 141
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.61 E-value=6.6e-05 Score=57.19 Aligned_cols=63 Identities=22% Similarity=0.438 Sum_probs=46.4
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---CC--C-CcEEEeC
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---IS--P-ADAVVLK 209 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~p--~-~D~~~l~ 209 (209)
..|+|+-||.|..++++++.++. ++.+|+ |..++.|+. ..+||+|+.+|+++- +. . +|+++++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 47999999999999999999766 777888 667777764 367999999999972 22 2 6999985
No 142
>PTZ00146 fibrillarin; Provisional
Probab=97.60 E-value=0.0003 Score=58.48 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=51.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeech-H----HHhhcccCCCCeEEEEccCCCCC------CCCcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLP-H----VVNGLESDLVNLKYVGGDMFKAI------SPADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dlp-~----v~~~a~~~~~ri~~~~gD~~~~~------p~~D~~~l 208 (209)
+.+..+|||+|||+|.++..+++... .=+++.+|+. . +++.++ ...+|.++.+|+..+. +.+|++++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 45668999999999999999999874 4588999984 3 455554 3468999999986542 23899875
No 143
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.58 E-value=8e-05 Score=59.00 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=51.2
Q ss_pred HHHHHhccccccC--CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC---C-C
Q 046346 131 SVMIQKCKNVFEG--LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS---P-A 203 (209)
Q Consensus 131 ~~~~~~~~~~~~~--~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p---~-~ 203 (209)
...++.+. +++ ...|||||||+|.-+..|.... ...+++|+ |+|++.|.+..-.=.++-+|+=+.+| + +
T Consensus 38 eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtF 113 (270)
T KOG1541|consen 38 ERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTF 113 (270)
T ss_pred HHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCcc
Confidence 44455555 555 7899999999999988887654 67899999 89999887411012356777777443 3 7
Q ss_pred cEEE
Q 046346 204 DAVV 207 (209)
Q Consensus 204 D~~~ 207 (209)
|-++
T Consensus 114 Dg~I 117 (270)
T KOG1541|consen 114 DGVI 117 (270)
T ss_pred ceEE
Confidence 7664
No 144
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.53 E-value=0.00027 Score=62.47 Aligned_cols=67 Identities=18% Similarity=0.302 Sum_probs=52.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-P-ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-~-~D~~~l 208 (209)
....+|||+|||+|..+..+++..+ ..+++.+|+ +..++.+++ ...+|+++.+|..+..+ . +|+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence 3457999999999999999988764 458999999 677776654 12479999999876333 3 899985
No 145
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.53 E-value=0.00021 Score=57.21 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=49.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEEccCCC-C--
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFK-A-- 199 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------~~~ri~~~~gD~~~-~-- 199 (209)
.....+|++.|||.|+-+..|+++ +.+++++|+ +..++.+.+ ..++|++..+|||+ +
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 345679999999999999999998 568999999 566766521 14689999999998 2
Q ss_pred CC-CCcEEE
Q 046346 200 IS-PADAVV 207 (209)
Q Consensus 200 ~p-~~D~~~ 207 (209)
.. .+|+|+
T Consensus 113 ~~g~fD~iy 121 (218)
T PF05724_consen 113 DVGKFDLIY 121 (218)
T ss_dssp CHHSEEEEE
T ss_pred hcCCceEEE
Confidence 22 278875
No 146
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.53 E-value=0.00028 Score=56.20 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=48.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCC-CeEEEEccCCC-C--CCC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLV-NLKYVGGDMFK-A--ISP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~-ri~~~~gD~~~-~--~p~-~D~~~l 208 (209)
...+|||+|||+|.++..+++..+ ++++.|+ +.+++.+++ ... ++++...|+.+ + .+. +|++++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEe
Confidence 467999999999999999988765 4889998 567766654 122 68888888765 2 234 899875
No 147
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.50 E-value=0.00024 Score=62.41 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=54.7
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--CCCeEEEEccCCCCC---
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--LVNLKYVGGDMFKAI--- 200 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~--~~ri~~~~gD~~~~~--- 200 (209)
..++..++ ..+..+|+|+|||+|..+..+++..|+.+++.+|. +..++.+++ . ..++.++.+|.....
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 33344454 44568999999999999999999998889999999 677776653 1 224555778876521
Q ss_pred C-C-CcEEEe
Q 046346 201 S-P-ADAVVL 208 (209)
Q Consensus 201 p-~-~D~~~l 208 (209)
+ . +|.|++
T Consensus 306 ~~~~fD~Vll 315 (426)
T TIGR00563 306 ENEQFDRILL 315 (426)
T ss_pred cccccCEEEE
Confidence 2 2 899875
No 148
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.47 E-value=0.00017 Score=56.47 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=49.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C--C-C-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I--S-P-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~--p-~-~D~~~l 208 (209)
...++||++||+|.++.+++.+... +++.+|. +.+++.+++ ..++++++.+|.++. + . . +|++++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3578999999999999999999764 7899998 566665553 245899999998652 1 1 2 687765
No 149
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.47 E-value=0.00039 Score=55.08 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=48.1
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEEEEcc
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKYVGGD 195 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------------~~~ri~~~~gD 195 (209)
..+++.+. ..+...++|||+|.|......+-.++--+++++++ |...+.|+. ...++++..+|
T Consensus 32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 33455555 56678999999999999999998888777999998 444443331 24688999999
Q ss_pred CCCC------CCCCcEEEe
Q 046346 196 MFKA------ISPADAVVL 208 (209)
Q Consensus 196 ~~~~------~p~~D~~~l 208 (209)
|.++ +..+|++++
T Consensus 110 fl~~~~~~~~~s~AdvVf~ 128 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFV 128 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE
T ss_pred ccccHhHhhhhcCCCEEEE
Confidence 9982 245899876
No 150
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.46 E-value=0.00036 Score=58.64 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=52.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEE
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVV 207 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~ 207 (209)
.+.|||||||+|.++.-.+++.. -++..++-.++.+.|++ +.+||+.++|-..+ ++|. +|+++
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviI 248 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVII 248 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEE
Confidence 58999999999999987777642 25677787888888775 57999999999988 8998 99986
No 151
>PRK00536 speE spermidine synthase; Provisional
Probab=97.45 E-value=0.0004 Score=56.99 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=51.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCCCCC--CCcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFKAIS--PADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~~~p--~~D~~~l 208 (209)
.+.+++||-||||.|..+++++|. |. +++.+|+ +.|++.+++ ..+|++.+. ++.+.. .+|+|++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhhccCCcCCEEEE
Confidence 467899999999999999999987 55 9999999 788988886 367999886 343322 3999975
No 152
>PLN02476 O-methyltransferase
Probab=97.45 E-value=0.00041 Score=57.38 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=55.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C------CCC
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SPA 203 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~------p~~ 203 (209)
..++++|||||+++|..++.+++..| +-+++.+|. |+..+.|++ ..++|+++.||..+- + +.+
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999999876 557899998 667777764 467999999998762 2 238
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|++++
T Consensus 196 D~VFI 200 (278)
T PLN02476 196 DFAFV 200 (278)
T ss_pred CEEEE
Confidence 99986
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.44 E-value=0.00027 Score=65.92 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=52.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEEccCCCC---CCC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA---ISP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~-~ri~~~~gD~~~~---~p~-~D~~~l 208 (209)
...+|||+|||+|.++..+++. ...+++.+|+ +.+++.|++ .. ++++++.+|.++. .+. +|+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 4589999999999999999986 3346999999 677887774 22 5899999998762 333 999986
No 154
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00021 Score=57.46 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=44.8
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 184 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~ 184 (209)
+..++.+...|-....+|||||.+|.++..+++.+-..+++++|+ |..|..|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark 100 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARK 100 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHH
Confidence 444666654466789999999999999999999999999999999 566777774
No 155
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.40 E-value=0.0011 Score=53.30 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHh
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPH-VVN 180 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~-v~~ 180 (209)
...+++.+. ......+++|||||+|.++..++++ +.-+++.+|... ++.
T Consensus 63 L~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~ 112 (228)
T TIGR00478 63 LKEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLA 112 (228)
T ss_pred HHHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHH
Confidence 344455554 1124579999999999999999987 456799999943 554
No 156
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.39 E-value=0.00046 Score=60.74 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=52.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C--CCC-CcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--ISP-ADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~--~p~-~D~~~l 208 (209)
..+..+|||+|||+|..+..+++.. ++.+++.+|+ +..++.+++ ...+++++.+|..+ + .+. +|.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 4456799999999999999999986 5678999999 677776654 12468999999865 2 233 899885
No 157
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.39 E-value=0.00028 Score=60.53 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=43.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK 198 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~ 198 (209)
.++||++||+|.++..+++... +++++|. +++++.|++ ..++++|+.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4699999999999999999874 7999998 788877764 23479999999865
No 158
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.38 E-value=0.00028 Score=57.50 Aligned_cols=67 Identities=24% Similarity=0.354 Sum_probs=53.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---C-CC-CCcEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---A-IS-PADAV 206 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~-~p-~~D~~ 206 (209)
+.+++||-||||.|..+.++++..|..+++++|+ |.|++.+++ ..+|++.+.+|.+. . .. .+|+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999997776778999999 888888875 25799999999764 3 33 48988
Q ss_pred Ee
Q 046346 207 VL 208 (209)
Q Consensus 207 ~l 208 (209)
++
T Consensus 155 i~ 156 (246)
T PF01564_consen 155 IV 156 (246)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 159
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0013 Score=53.34 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=66.7
Q ss_pred HHHHhhhHhh----HHHHHHhccccccCCCeEEEecCCccHHHHHHHH-HCCCCeEEEeec-hHHHhhccc------CCC
Q 046346 120 EAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAK-AFPKLECTCFDL-PHVVNGLES------DLV 187 (209)
Q Consensus 120 ~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~P~l~~~~~Dl-p~v~~~a~~------~~~ 187 (209)
..|...++.. +..++.... ..+..+|+|.|-|||.++..|++ -.|.-+++.+|. ++-.+.|++ +.+
T Consensus 69 ~~~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d 146 (256)
T COG2519 69 LSMKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD 146 (256)
T ss_pred HhCcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc
Confidence 3365544422 345566666 77889999999999999999997 578889999998 677777764 467
Q ss_pred CeEEEEccCCCC-CCC-CcEEEe
Q 046346 188 NLKYVGGDMFKA-ISP-ADAVVL 208 (209)
Q Consensus 188 ri~~~~gD~~~~-~p~-~D~~~l 208 (209)
+|++..+|+.+. .+. +|+++|
T Consensus 147 ~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 147 RVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred ceEEEeccccccccccccCEEEE
Confidence 899999999884 444 899886
No 160
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.38 E-value=0.00067 Score=54.57 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=42.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhhc---ccCCC-CeEEEEccCCC
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGL---ESDLV-NLKYVGGDMFK 198 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a---~~~~~-ri~~~~gD~~~ 198 (209)
...+||||||.|.+...+|+++|+..++++++ +.+.... .+..- ++.++.+|..+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~ 109 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE 109 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence 36899999999999999999999999999998 3333322 22333 78888887543
No 161
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.38 E-value=0.00035 Score=60.77 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=50.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEEccCCCCC------C-CCcEEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKAI------S-PADAVV 207 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~-~ri~~~~gD~~~~~------p-~~D~~~ 207 (209)
...+|||+|||+|.++...+.. +..+++.+|+ +.+++.|++ .. ++++++.+|+++-+ . .+|+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999998876653 4558999999 677777664 22 48999999998721 2 389998
Q ss_pred e
Q 046346 208 L 208 (209)
Q Consensus 208 l 208 (209)
+
T Consensus 299 l 299 (396)
T PRK15128 299 M 299 (396)
T ss_pred E
Confidence 6
No 162
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.36 E-value=0.0014 Score=52.76 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=49.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEEccCCC-CC-C
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFK-AI-S 201 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------~~~ri~~~~gD~~~-~~-p 201 (209)
....+|++.|||.|.-+.-|+++ +.+++++|+ +..++.+.+ ...+|++..+|||+ +. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999998 566999999 555665321 24589999999998 22 1
Q ss_pred ----CCcEEE
Q 046346 202 ----PADAVV 207 (209)
Q Consensus 202 ----~~D~~~ 207 (209)
.+|+|+
T Consensus 120 ~~~~~fD~Vy 129 (226)
T PRK13256 120 NNLPVFDIWY 129 (226)
T ss_pred cccCCcCeee
Confidence 378875
No 163
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.35 E-value=0.00058 Score=60.15 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=52.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C----C-CC-CcEE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A----I-SP-ADAV 206 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~----~-p~-~D~~ 206 (209)
.....+|||+|||+|..+..+++..+ ..+++.+|+ ++.++.+++ ...+|+++.+|..+ + . +. +|.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 34568999999999999999999864 468999998 677776654 13469999999865 2 1 23 8999
Q ss_pred Ee
Q 046346 207 VL 208 (209)
Q Consensus 207 ~l 208 (209)
++
T Consensus 330 l~ 331 (434)
T PRK14901 330 LL 331 (434)
T ss_pred EE
Confidence 86
No 164
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.29 E-value=0.0015 Score=57.75 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=45.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHC----CCCeEEEeec-hHHHhhc----c--cCCCCeEEEEccCCC-CCCC-CcEEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAF----PKLECTCFDL-PHVVNGL----E--SDLVNLKYVGGDMFK-AISP-ADAVV 207 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~----P~l~~~~~Dl-p~v~~~a----~--~~~~ri~~~~gD~~~-~~p~-~D~~~ 207 (209)
....|+|||+|+|.++...+++. -..++..++- |.++... + ...++|+++.+|+.+ ..|. +|+++
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 35789999999999988776664 4567888887 3322221 1 146899999999988 7786 99986
No 165
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.29 E-value=0.00037 Score=59.99 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=42.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK 198 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~ 198 (209)
.++||++||+|.++..+++... +++++|. +.+++.+++ ..++++|+.+|.++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998865 7899998 677777664 23589999999865
No 166
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.21 E-value=0.001 Score=54.75 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=51.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C--CCCCcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--ISPADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~--~p~~D~~~l 208 (209)
....+|||+|||+|..+..+++..++ -+++.+|+ +..++.+++ ...+|+++.+|... + .+.+|.|++
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 45679999999999999999998754 58899999 677766553 23568899999654 2 234899875
No 167
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.19 E-value=0.0018 Score=53.56 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=53.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC------CCCCcEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA------ISPADAV 206 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~--l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~------~p~~D~~ 206 (209)
..+-+||||.||+|.+....++.+|. .++.+.|. |.-++..++ +.+-++|..+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35789999999999999999999998 78899998 555665553 455669999999982 2446877
Q ss_pred EeC
Q 046346 207 VLK 209 (209)
Q Consensus 207 ~l~ 209 (209)
+++
T Consensus 214 iVs 216 (311)
T PF12147_consen 214 IVS 216 (311)
T ss_pred EEe
Confidence 754
No 168
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.19 E-value=0.0014 Score=53.81 Aligned_cols=66 Identities=15% Similarity=0.382 Sum_probs=52.0
Q ss_pred hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC
Q 046346 129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK 198 (209)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~ 198 (209)
.+..+++.++ ......|+|||.|.|.++..|+++. -+.++++. +..++..++ ..++++++.+|+++
T Consensus 18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence 4566677666 5678999999999999999999998 66888887 555554443 36899999999997
No 169
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.15 E-value=0.0012 Score=48.61 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=40.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCC
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMF 197 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~ 197 (209)
+++|||||.|.++..+++.+|..+++.+|- |...+.+++ ...+++++.....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 589999999999999999999999999998 666665443 1234666665554
No 170
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.13 E-value=0.0012 Score=50.94 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=43.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc--------CCCCeEEEEccCCCCC------CC-CcE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFKAI------SP-ADA 205 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~--------~~~ri~~~~gD~~~~~------p~-~D~ 205 (209)
.....+||++|||+|..++.+++..+..++++-|.+++++..+. ...++++...|+-++. +. +|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34578999999999999999999988889999999887775543 2478899999986622 22 788
Q ss_pred EEe
Q 046346 206 VVL 208 (209)
Q Consensus 206 ~~l 208 (209)
|+-
T Consensus 123 Ila 125 (173)
T PF10294_consen 123 ILA 125 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 171
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.13 E-value=0.001 Score=49.47 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=43.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhccc--------CCCCeEEEEccCCC
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK 198 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~----~P~l~~~~~Dl-p~v~~~a~~--------~~~ri~~~~gD~~~ 198 (209)
..+..+|||+|||.|+++..|+.. .|+++++.+|. +..++.+.. ...++++..+++.+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 356799999999999999999992 28899999998 455555442 23567777776644
No 172
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0032 Score=51.48 Aligned_cols=69 Identities=14% Similarity=0.329 Sum_probs=50.9
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc---CCCCeEEEEccCCC-CCC
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES---DLVNLKYVGGDMFK-AIS 201 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~---~~~ri~~~~gD~~~-~~p 201 (209)
...+++..+ ......|++||+|.|.++..|+++...+.++=.| +..++.-++ ..++++.+.+|+.+ ++|
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcch
Confidence 456666665 4557899999999999999999998875554444 333333222 46899999999998 666
No 173
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.04 E-value=0.00098 Score=53.29 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhHhhHHHH----HHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346 114 LNNFFNEAMASDARLATSVM----IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 184 (209)
Q Consensus 114 ~~~~f~~~m~~~~~~~~~~~----~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~ 184 (209)
.+++|.......-....|.. +...+ ..+.++++|+|||||..+..|...-..+ +++|+ ..|++.|.+
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~~l--tGvDiS~nMl~kA~e 165 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMADRL--TGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHhhc--cCCchhHHHHHHHHh
Confidence 34556555543222222333 33333 3448999999999999999998876554 45899 578887764
No 174
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.00072 Score=50.28 Aligned_cols=63 Identities=27% Similarity=0.364 Sum_probs=47.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhccc----CCCCeEEEEccCCCCCC--C-CcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--P-ADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p--~-~D~~~l 208 (209)
...+.|+|||.|-++ ++-.+|..+ ++++|+ |+.++.+.. ..-++.++..|+.++-+ + +|..++
T Consensus 49 gkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred CcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEe
Confidence 588999999999998 555677664 799999 888887653 34567889999888533 2 666554
No 175
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.98 E-value=0.0018 Score=51.31 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=47.3
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC---CcEEEe
Q 046346 147 LVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP---ADAVVL 208 (209)
Q Consensus 147 vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~---~D~~~l 208 (209)
|+||||-+|.+.+.|+++..--+++..|+ +.-++.|++ +.++|++.-+|=++.++. .|++++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence 68999999999999999999999999999 666666664 578999999998786653 677765
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.94 E-value=0.0028 Score=51.63 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=55.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C-------CC
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I-------SP 202 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~-------p~ 202 (209)
..+++++|+||.+.|.-+..+++..| +.+++.+|. |+..+.|++ ..++|+++.||..+- + ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 44689999999999999999999875 678999998 666777764 468999999998762 1 24
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|++++
T Consensus 157 fD~iFi 162 (247)
T PLN02589 157 FDFIFV 162 (247)
T ss_pred ccEEEe
Confidence 899986
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.92 E-value=0.0031 Score=50.35 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=56.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEE-ccCCC---C-CC-CCcEE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVG-GDMFK---A-IS-PADAV 206 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~-gD~~~---~-~p-~~D~~ 206 (209)
..+++++|+||.+.|.-++.++...| +-+.|.+|+ |+.++.|++ ..++|+.+. ||..+ . .. .+|++
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56899999999999999999999999 788999999 788888875 467898888 58765 2 23 39999
Q ss_pred Ee
Q 046346 207 VL 208 (209)
Q Consensus 207 ~l 208 (209)
|+
T Consensus 137 FI 138 (219)
T COG4122 137 FI 138 (219)
T ss_pred EE
Confidence 86
No 178
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.88 E-value=0.0039 Score=48.31 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=48.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCe---------EEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC-C
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLE---------CTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-P 202 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~---------~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p-~ 202 (209)
+.+...|+|-=||+|+++++.+...++.. +++.|. +.+++.|+. ....|.+...|+++ +++ .
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 45678999999999999999888887777 899999 777777664 35679999999987 533 3
Q ss_pred -CcEEE
Q 046346 203 -ADAVV 207 (209)
Q Consensus 203 -~D~~~ 207 (209)
.|+++
T Consensus 106 ~~d~Iv 111 (179)
T PF01170_consen 106 SVDAIV 111 (179)
T ss_dssp BSCEEE
T ss_pred CCCEEE
Confidence 78876
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.79 E-value=0.0028 Score=56.99 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=41.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhhccc----CCCCeEEEEccC
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGLES----DLVNLKYVGGDM 196 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a~~----~~~ri~~~~gD~ 196 (209)
....+||||||.|.++..+++++|+..++++|. +.+....+. ...++.++.+|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~ 406 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL 406 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 468999999999999999999999999999998 344333322 234566666664
No 180
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.70 E-value=0.007 Score=51.41 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=49.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCCC--C-CcEEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAIS--P-ADAVV 207 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~p--~-~D~~~ 207 (209)
.+..++||||+++|.++..++++ +.+++.+|...+-.... ..+||+++.+|-|.-.| . +|+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh-CCCCEEEEeccCcccCCCCCCCCEEE
Confidence 46789999999999999999999 55899999755544333 47899999999887443 2 67664
No 181
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.69 E-value=0.014 Score=47.58 Aligned_cols=90 Identities=16% Similarity=0.253 Sum_probs=58.9
Q ss_pred HHHHHHHhhhHhh----HHHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------
Q 046346 117 FFNEAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------ 184 (209)
Q Consensus 117 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~------ 184 (209)
.|...|...++.. +..++-.++ ..+..+||+.|-|+|.++..|++. .|.=++.-+|. ++-.+.|++
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g 89 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG 89 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC
Confidence 3555555544322 344555666 778899999999999999999975 68889999998 666666664
Q ss_pred CCCCeEEEEccCCC-CC----CC-CcEEEe
Q 046346 185 DLVNLKYVGGDMFK-AI----SP-ADAVVL 208 (209)
Q Consensus 185 ~~~ri~~~~gD~~~-~~----p~-~D~~~l 208 (209)
+.++|++..+|..+ .+ .. +|+++|
T Consensus 90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL 119 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL 119 (247)
T ss_dssp CCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred CCCCceeEecceecccccccccCcccEEEE
Confidence 46789999999865 23 23 899987
No 182
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.68 E-value=0.011 Score=49.61 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=59.5
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC------C
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK------A 199 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~------~ 199 (209)
..+++.+. ..+...+||.=+|.|..+..++++.|+.+++++|. |.+++.+++ ..+|++++.++|-+ .
T Consensus 10 ~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 10 DEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 44556554 34567999999999999999999998899999999 788887765 34699999999875 1
Q ss_pred C--CCCcEEEe
Q 046346 200 I--SPADAVVL 208 (209)
Q Consensus 200 ~--p~~D~~~l 208 (209)
. ..+|.+++
T Consensus 88 ~~~~~vDgIl~ 98 (305)
T TIGR00006 88 LLVTKIDGILV 98 (305)
T ss_pred cCCCcccEEEE
Confidence 1 23788775
No 183
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.65 E-value=0.0043 Score=53.81 Aligned_cols=65 Identities=22% Similarity=0.140 Sum_probs=50.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---CCCCcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---ISPADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~p~~D~~~l 208 (209)
..+|+|++||+|.+++.++++.+..+++..|. |..++.+++ ..+.+++..+|..+- .+.+|++++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence 46899999999999999999988668999999 777777664 234567888887542 233898875
No 184
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.62 E-value=0.0062 Score=51.92 Aligned_cols=67 Identities=25% Similarity=0.481 Sum_probs=53.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhccc------------CCCCeEEEEccCCCCC---C-C
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFKAI---S-P 202 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~------------~~~ri~~~~gD~~~~~---p-~ 202 (209)
.++.++++-+|||.|..+++++ +||+. +.+.+|+ |.|++.++. ..+|++.+.-|.|+=+ . .
T Consensus 287 ~~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 3578999999999999999986 57866 6899999 999998773 3679999999988621 1 2
Q ss_pred CcEEEe
Q 046346 203 ADAVVL 208 (209)
Q Consensus 203 ~D~~~l 208 (209)
+|.++.
T Consensus 366 fD~vIV 371 (508)
T COG4262 366 FDVVIV 371 (508)
T ss_pred ccEEEE
Confidence 676653
No 185
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.0072 Score=46.70 Aligned_cols=65 Identities=18% Similarity=0.398 Sum_probs=50.1
Q ss_pred CCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCC--CCcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p--~~D~~~l 208 (209)
...+++||||+|.++..|++.. |+.....-|+ |++++...+ ...++..+..|+++.+- ..|++++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEE
Confidence 7889999999999999988774 7888899999 777665432 34567788889988542 2787765
No 186
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.54 E-value=0.0043 Score=49.96 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=34.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 184 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~ 184 (209)
.+.+.++|||||+|..++.++..|.+ +|..|. +.+++.|.+
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKK 73 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhc
Confidence 45569999999999888888888777 777998 788998875
No 187
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.014 Score=46.04 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=51.1
Q ss_pred hHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhhcccCCCCeEEEEccCCC
Q 046346 126 ARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198 (209)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~ 198 (209)
+.....++.+.+ ..+.+..+|+|+|+.+|.++.-++++-. ..+++++|+-++-. ...|.++.+||++
T Consensus 29 Aa~KL~el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----~~~V~~iq~d~~~ 96 (205)
T COG0293 29 AAYKLLELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----IPGVIFLQGDITD 96 (205)
T ss_pred HHHHHHHHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----CCCceEEeeeccC
Confidence 334455666666 3578889999999999999998888765 45789999866532 3459999999986
No 188
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.41 E-value=0.011 Score=47.92 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=48.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISP--ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~--~D~~~l 208 (209)
.+.+|+|||||-=-++.-.....|+.+.+..|+ ...++.... +..+.+....|.+...|. +|+.+|
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence 489999999999999999999999999999999 444444332 567888888999997654 898864
No 189
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.40 E-value=0.014 Score=44.57 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=56.2
Q ss_pred HhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC------
Q 046346 127 RLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK------ 198 (209)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~------ 198 (209)
.+.++.++...+ +.+..-|+++|.|+|.+..+++++. +....+..+. ++-...-.+..+.++++.||.|.
T Consensus 34 s~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 34 SILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 344566666677 7778899999999999999988874 5555666665 55554444456677789999886
Q ss_pred CCCC--CcEEE
Q 046346 199 AISP--ADAVV 207 (209)
Q Consensus 199 ~~p~--~D~~~ 207 (209)
+.+. +|.++
T Consensus 112 e~~gq~~D~vi 122 (194)
T COG3963 112 EHKGQFFDSVI 122 (194)
T ss_pred hcCCCeeeeEE
Confidence 3443 78775
No 190
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.33 E-value=0.006 Score=50.88 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=31.6
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..+...++. + ..++|+|||||+|.++-.++++.|. .++++|-
T Consensus 105 ~rl~p~l~~-L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP 146 (315)
T PF08003_consen 105 DRLLPHLPD-L-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDP 146 (315)
T ss_pred HHHHhhhCC-c-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECC
Confidence 444455531 3 4689999999999999999999765 3778884
No 191
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.30 E-value=0.0099 Score=46.93 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=49.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC-CC-CcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-SP-ADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~-p~-~D~~~l 208 (209)
..+..+|+|+-||-|.+++.+++..+..+++..|+ |..++..++ ..++|+.+.+|..+-. .. +|-++|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim 175 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIM 175 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEE
Confidence 34578999999999999999999888889999999 777765443 5788999999987633 23 787776
No 192
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.27 E-value=0.0065 Score=48.94 Aligned_cols=68 Identities=16% Similarity=0.343 Sum_probs=49.8
Q ss_pred HHHHHhcccccc----CCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhhccc----CCCCeEEEEccCCC
Q 046346 131 SVMIQKCKNVFE----GLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK 198 (209)
Q Consensus 131 ~~~~~~~~~~~~----~~~~vlDvGgG~G~~~~~l~~~~P~--l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~ 198 (209)
.++.+.++..++ +..++++||||.|...-=|++.+|+ ++....|. |.+++..++ ...|+.....|+..
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTS 133 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccc
Confidence 344455543322 3348999999999999999999999 88899998 777776554 24567767777765
No 193
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.21 E-value=0.022 Score=53.27 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=54.3
Q ss_pred HHHHHhccccc-cCCCeEEEecCCccHHHHHHHHHC----C--------------------------------------C
Q 046346 131 SVMIQKCKNVF-EGLNSLVDVGGGTGTAAKAIAKAF----P--------------------------------------K 167 (209)
Q Consensus 131 ~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~----P--------------------------------------~ 167 (209)
..++..-. | .+...++|-.||+|+++++.+... | .
T Consensus 179 aa~l~~a~--w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 179 AAILLRSG--WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHcC--CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 34444434 4 456899999999999999876631 1 2
Q ss_pred CeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC----CCcEEEe
Q 046346 168 LECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS----PADAVVL 208 (209)
Q Consensus 168 l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p----~~D~~~l 208 (209)
.+++++|+ +.+++.|+. ..++|++..+|+++ +.| .+|+++.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~Ivt 309 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVIS 309 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEE
Confidence 36899998 788887774 45689999999987 322 2788764
No 194
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.16 E-value=0.0074 Score=47.60 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=32.9
Q ss_pred HHhccccccCCC-eEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046346 134 IQKCKNVFEGLN-SLVDVGGGTGTAAKAIAKAFPKLECTCFDLP 176 (209)
Q Consensus 134 ~~~~~~~~~~~~-~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp 176 (209)
++.+...++... +||+||+|||..+..+++.+|+++..=-|..
T Consensus 15 l~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~ 58 (204)
T PF06080_consen 15 LEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPD 58 (204)
T ss_pred HHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCC
Confidence 333333344445 5999999999999999999999988766763
No 195
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.022 Score=45.07 Aligned_cols=75 Identities=23% Similarity=0.282 Sum_probs=52.4
Q ss_pred HHHhccccccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHhhccc---------------CCCCeEEEEc
Q 046346 133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLES---------------DLVNLKYVGG 194 (209)
Q Consensus 133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dl-p~v~~~a~~---------------~~~ri~~~~g 194 (209)
+++.++..+.+..++||||.|+|.++..++..- |....+++|+ |++++.+.+ ...++.++.|
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 344444345677899999999999999887543 3333377887 888876553 2468899999
Q ss_pred cCCCCCC---CCcEEE
Q 046346 195 DMFKAIS---PADAVV 207 (209)
Q Consensus 195 D~~~~~p---~~D~~~ 207 (209)
|=..-.+ ++|.|.
T Consensus 152 Dgr~g~~e~a~YDaIh 167 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIH 167 (237)
T ss_pred CccccCCccCCcceEE
Confidence 9776333 388875
No 196
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.08 E-value=0.018 Score=45.57 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=48.3
Q ss_pred cccCCCcHHHHHHHHHHHhhh-Hh---hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhh
Q 046346 106 EYDGDEPKLNNFFNEAMASDA-RL---ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG 181 (209)
Q Consensus 106 ~~~~~~~~~~~~f~~~m~~~~-~~---~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~ 181 (209)
+.+.++|+....|+.+-+... .| ....+++.+.. .+....|.|.|||.+.++..+. ...++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~--- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP--- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S---
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC---
Confidence 445677877777776655422 12 24555555541 3456799999999999996653 2346777887332
Q ss_pred cccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346 182 LESDLVNLKYVGGDMFK-AISP--ADAVVL 208 (209)
Q Consensus 182 a~~~~~ri~~~~gD~~~-~~p~--~D~~~l 208 (209)
.++ .++.|+-+ |++. .|++++
T Consensus 105 ----n~~--Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 105 ----NPR--VTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp ----STT--EEES-TTS-S--TT-EEEEEE
T ss_pred ----CCC--EEEecCccCcCCCCceeEEEE
Confidence 234 46788865 7665 788764
No 197
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.97 E-value=0.029 Score=47.14 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=50.6
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK 198 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~ 198 (209)
...+++.+. ..+...+||.=-|.|.++.++++++|+.+.+++|+ |.+++.|++ ..+|+.++.++|-+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 345566665 45678999999999999999999999999999999 888877765 36899999999875
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.96 E-value=0.03 Score=43.65 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=46.5
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec----hHHHhhcc-c-CCCCeEEEEccCCC-CCCC-CcEEEeC
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL----PHVVNGLE-S-DLVNLKYVGGDMFK-AISP-ADAVVLK 209 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl----p~v~~~a~-~-~~~ri~~~~gD~~~-~~p~-~D~~~l~ 209 (209)
+++|||.|.|.=++-++=.+|+++++++|- -..++.+. + .-++++.+.+...+ ..+. +|+++.|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEee
Confidence 899999999999999999999999999996 12233322 2 24579999998866 3443 8988753
No 199
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.94 E-value=0.012 Score=41.50 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
....+||||||+|.+..-|.+. +.++.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 5678999999999999998887 556788884
No 200
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.91 E-value=0.026 Score=44.94 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC-C--CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-P--ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p-~--~D~~~l 208 (209)
...++.||||-++.+.+.+.+.+|..+++..|. +.-++.|.+ +.+||+.-.+|=+.++- . .|++++
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEE
Confidence 445599999999999999999999999999998 544544432 67899999999887542 2 677654
No 201
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.84 E-value=0.029 Score=46.42 Aligned_cols=42 Identities=36% Similarity=0.581 Sum_probs=35.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhccc
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~ 184 (209)
.+.+|||+|+|+|..+-++...+|.+ +++++|. +.+++.++.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~ 76 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR 76 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH
Confidence 46799999999999999999999966 4789998 677776654
No 202
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.40 E-value=0.025 Score=43.58 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=36.5
Q ss_pred HHHHHHhcccccc--CCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHH
Q 046346 130 TSVMIQKCKNVFE--GLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHV 178 (209)
Q Consensus 130 ~~~~~~~~~~~~~--~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v 178 (209)
..++.+.++. +. ...++||+||++|.++..++++. +..+++.+|+...
T Consensus 9 L~ei~~~~~~-~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 9 LYEIDEKFKI-FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHTTSS-S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHCCC-CCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 3455565651 22 45999999999999999999998 7889999999544
No 203
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.28 E-value=0.085 Score=42.09 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=49.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec----hHHHhhccc-C-CCCeEEEEccCCC--CCCC-CcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL----PHVVNGLES-D-LVNLKYVGGDMFK--AISP-ADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl----p~v~~~a~~-~-~~ri~~~~gD~~~--~~p~-~D~~~l 208 (209)
..+++|||-|.|.=++=++=.+|+++++++|- -.-++.+.. + -++++++.+..-+ ..+. +|+++-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEe
Confidence 68999999999999999999999999999995 233333332 2 4668888887755 2344 888764
No 204
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=0.08 Score=41.25 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=32.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHH
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHV 178 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v 178 (209)
+.+..+|+|+|+.+|.++.-..++. |+-.+.++|+-+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~ 105 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI 105 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec
Confidence 5678999999999999999777765 9999999998444
No 205
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.13 E-value=0.014 Score=46.48 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=45.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK 198 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~ 198 (209)
....|+|.=||-|...+..+.++|. ++..|+ |.-|..|+. ..+||+|+.|||++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 6789999999999999999999998 556777 666777774 35799999999987
No 206
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.12 E-value=0.11 Score=42.65 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=54.0
Q ss_pred ccCCCcHHHHHHHHHHHhhhH-h---hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhc
Q 046346 107 YDGDEPKLNNFFNEAMASDAR-L---ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGL 182 (209)
Q Consensus 107 ~~~~~~~~~~~f~~~m~~~~~-~---~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a 182 (209)
.+.++|.....|+++....-. | ....+++.+. .-+....|.|+|||.+.++.. + ..++.-+||-.+
T Consensus 141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~~---~--~~kV~SfDL~a~---- 210 (325)
T KOG3045|consen 141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIASS---E--RHKVHSFDLVAV---- 210 (325)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhhc---c--ccceeeeeeecC----
Confidence 456778777777776654222 2 2455556554 235678999999999998871 1 224566776433
Q ss_pred ccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346 183 ESDLVNLKYVGGDMFK-AISP--ADAVVL 208 (209)
Q Consensus 183 ~~~~~ri~~~~gD~~~-~~p~--~D~~~l 208 (209)
.+|| +++|+.+ |++. .|+.+.
T Consensus 211 ---~~~V--~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 211 ---NERV--IACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred ---CCce--eeccccCCcCccCcccEEEe
Confidence 3444 6778776 5554 677654
No 207
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.85 E-value=0.13 Score=42.99 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=55.2
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhccc----CCCCeEEEEccCCC
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLES----DLVNLKYVGGDMFK 198 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~ 198 (209)
..+++.+. .......||.==|.|.++.++++++|... .+++|. |.+++.|++ ..+|++++.++|-+
T Consensus 13 ~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 13 NEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 44556665 44568999999999999999999999886 999999 899999886 36799999998865
No 208
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.78 E-value=0.15 Score=40.07 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=42.0
Q ss_pred CCCeEEEecCCccH----HHHHHHHHC---C--CCeEEEeec-hHHHhhccc----------------------------
Q 046346 143 GLNSLVDVGGGTGT----AAKAIAKAF---P--KLECTCFDL-PHVVNGLES---------------------------- 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~----~~~~l~~~~---P--~l~~~~~Dl-p~v~~~a~~---------------------------- 184 (209)
+.-+|+-.||++|. +++.+.+.. . ..++++-|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999996 333344421 2 357788998 678887762
Q ss_pred -----CCCCeEEEEccCCCC-CC-C-CcEEEeC
Q 046346 185 -----DLVNLKYVGGDMFKA-IS-P-ADAVVLK 209 (209)
Q Consensus 185 -----~~~ri~~~~gD~~~~-~p-~-~D~~~l~ 209 (209)
...+|+|..+|..++ .+ . +|+|+.|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CR 143 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCR 143 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEec
Confidence 146899999999993 22 3 8999864
No 209
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=94.74 E-value=0.036 Score=43.10 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=47.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C---CC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I---SP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~---p~-~D~~~l 208 (209)
...++||+=+|||.++.+.+.|.-. +++.+|. +..+...++ ..++++.+.+|++.. . .. +|+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 4689999999999999999988633 6888998 566655553 345799999997652 1 23 899986
No 210
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.51 E-value=0.47 Score=39.20 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=51.7
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCCC-----CeEEEeec-hHHHhhccc----------------------------
Q 046346 143 GLNSLVDVGGGTGT----AAKAIAKAFPK-----LECTCFDL-PHVVNGLES---------------------------- 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~----~~~~l~~~~P~-----l~~~~~Dl-p~v~~~a~~---------------------------- 184 (209)
+.-+|.-.||+||. +++.+.+.+|. .+++.-|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999995 66778888874 67788998 577776652
Q ss_pred ------CCCCeEEEEccCCCCC--CC-CcEEEeC
Q 046346 185 ------DLVNLKYVGGDMFKAI--SP-ADAVVLK 209 (209)
Q Consensus 185 ------~~~ri~~~~gD~~~~~--p~-~D~~~l~ 209 (209)
....|.|..+|.+++. +. +|+|+.|
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR 209 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR 209 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEc
Confidence 1357899999999844 44 9999864
No 211
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.46 E-value=0.037 Score=43.61 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=29.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
-..++|||||-|.+++.|.-.||+.-.+++++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehh
Confidence 36799999999999999999999999999987
No 212
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.39 E-value=0.13 Score=45.43 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=50.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---CCC---CCcEEEe
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS---PADAVVL 208 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~~p---~~D~~~l 208 (209)
..+..+|+|+=||.|.++..|+++ --+++++++ |+.++.|++ ..++++|+.+|..+ .+. .+|.+++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 346689999999999999999955 445777888 777777764 34569999999776 332 3788875
No 213
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.20 E-value=0.12 Score=44.72 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=49.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---C-CCCcEEEe
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I-SPADAVVL 208 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~-p~~D~~~l 208 (209)
.+|||.-+|+|..++..+++.++. +++..|+ |..++.+++ ...++++..+|...- . ..+|+|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 589999999999999999997665 6899999 777776654 123578888888752 1 23888875
No 214
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.02 E-value=0.1 Score=47.12 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=45.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC--------CeEEEeec-hHHHhhccc----C-CCCeEEEEccCCCC-------C-
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPK--------LECTCFDL-PHVVNGLES----D-LVNLKYVGGDMFKA-------I- 200 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~--------l~~~~~Dl-p~v~~~a~~----~-~~ri~~~~gD~~~~-------~- 200 (209)
...+|+|.+||+|.++.+++++.+. ....++|+ +.++..++. . ...++...+|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999988863 45688898 566665543 1 12355566665531 1
Q ss_pred CCCcEEEe
Q 046346 201 SPADAVVL 208 (209)
Q Consensus 201 p~~D~~~l 208 (209)
+.+|+|+-
T Consensus 111 ~~fD~IIg 118 (524)
T TIGR02987 111 DLFDIVIT 118 (524)
T ss_pred CcccEEEe
Confidence 23898873
No 215
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.88 E-value=0.39 Score=39.54 Aligned_cols=56 Identities=21% Similarity=0.379 Sum_probs=33.6
Q ss_pred CCCeEEEecCCcc---HHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCC--eEEEEccCCC
Q 046346 143 GLNSLVDVGGGTG---TAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVN--LKYVGGDMFK 198 (209)
Q Consensus 143 ~~~~vlDvGgG~G---~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~r--i~~~~gD~~~ 198 (209)
+...+||||||-- ..-.-..+..|+.|++=+|. |-|+..++. ..++ ..++.+|+.+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD 132 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence 7899999999954 44444556689999999998 777777775 2334 8999999987
No 216
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.82 E-value=0.22 Score=41.68 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=45.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEeec-hHHHhhccc-------CCCCeEEEEccCCC--CCC---
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKA-------FPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK--AIS--- 201 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~-------~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~--~~p--- 201 (209)
....+|+|-.||+|.++.++.+. .+..+..++|+ +.++..|+- .........+|.+. ...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 34568999999999999998885 48888999999 555554441 12334578899886 232
Q ss_pred CCcEEEe
Q 046346 202 PADAVVL 208 (209)
Q Consensus 202 ~~D~~~l 208 (209)
.+|+++.
T Consensus 125 ~~D~ii~ 131 (311)
T PF02384_consen 125 KFDVIIG 131 (311)
T ss_dssp -EEEEEE
T ss_pred ccccccC
Confidence 3898874
No 217
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=93.78 E-value=0.52 Score=38.93 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=64.9
Q ss_pred HHHHHHHhhhHh----hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHH-Hhhccc------
Q 046346 117 FFNEAMASDARL----ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHV-VNGLES------ 184 (209)
Q Consensus 117 ~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v-~~~a~~------ 184 (209)
.|..+|...++. -+..++..++ .....+|++-|-|+|.++.++++.- |.=+..-+|..+. .+.|.+
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg 154 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG 154 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC
Confidence 355566554432 2456677777 7788999999999999999999996 7767888888332 334443
Q ss_pred CCCCeEEEEccCCC-CCC--C--CcEEEe
Q 046346 185 DLVNLKYVGGDMFK-AIS--P--ADAVVL 208 (209)
Q Consensus 185 ~~~ri~~~~gD~~~-~~p--~--~D~~~l 208 (209)
..+.+++..-|... .++ . ||.++|
T Consensus 155 i~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 155 IGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCcceEEEEeecccCCccccccccceEEE
Confidence 47889999999887 233 2 898887
No 218
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=0.085 Score=46.95 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=41.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEc
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGG 194 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~g 194 (209)
++....++||-||||.++.++++... +++++++ |+.++.|+. ...+.+|+.|
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceeeeec
Confidence 56679999999999999999988754 4677777 777776664 3578899998
No 219
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.70 E-value=0.19 Score=39.31 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=47.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCCCcEEE
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISPADAVV 207 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~~D~~~ 207 (209)
.++.|+|.|+|.++.-.+++ .-|++..++ |.....|.+ -..+++.+.||..+ .+..+|+++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvi 101 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVI 101 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeH
Confidence 68899999999999877777 456888887 666666664 24689999999987 675688774
No 220
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.60 E-value=0.098 Score=44.62 Aligned_cols=65 Identities=23% Similarity=0.407 Sum_probs=43.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCe-EEEeechHHHh----h-ccc-CCCCeEEEEccCCC---CCCCCcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDLPHVVN----G-LES-DLVNLKYVGGDMFK---AISPADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dlp~v~~----~-a~~-~~~ri~~~~gD~~~---~~p~~D~~~l 208 (209)
.++|||||-|+|.-+.++-.-+|+++ +++++....+. . +.. ...+..+-..|+.. ++|.+|.|.|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeeh
Confidence 57899999999999999999999996 67777743332 1 111 12223334455544 5777787754
No 221
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.33 E-value=0.099 Score=44.88 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=40.6
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEcc
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGD 195 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD 195 (209)
..+++.++ ..+ ..++|+=||.|.++..+++.... ++++|. +++++.|+. ..++++|+.++
T Consensus 187 ~~~~~~l~--~~~-~~vlDlycG~G~fsl~la~~~~~--V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~ 252 (352)
T PF05958_consen 187 EQALEWLD--LSK-GDVLDLYCGVGTFSLPLAKKAKK--VIGVEIVEEAVEDARENAKLNGIDNVEFIRGD 252 (352)
T ss_dssp HHHHHHCT--T-T-TEEEEES-TTTCCHHHHHCCSSE--EEEEES-HHHHHHHHHHHHHTT--SEEEEE--
T ss_pred HHHHHHhh--cCC-CcEEEEeecCCHHHHHHHhhCCe--EEEeeCCHHHHHHHHHHHHHcCCCcceEEEee
Confidence 44445444 333 37999999999999999988754 777887 778887774 35789998765
No 222
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.94 E-value=0.46 Score=41.04 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=52.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC---------------------------------------eEEEeec-hHHHh
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKL---------------------------------------ECTCFDL-PHVVN 180 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l---------------------------------------~~~~~Dl-p~v~~ 180 (209)
|.+...++|==||+|+++++.+...++. ..+++|+ +.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 5556899999999999999998888642 1668998 78888
Q ss_pred hccc------CCCCeEEEEccCCC-CCC--CCcEEEe
Q 046346 181 GLES------DLVNLKYVGGDMFK-AIS--PADAVVL 208 (209)
Q Consensus 181 ~a~~------~~~ri~~~~gD~~~-~~p--~~D~~~l 208 (209)
.|+. ..+.|+|..+|+.. +-| .+|+++.
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~ 305 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVIS 305 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEe
Confidence 7764 57889999999865 323 3787763
No 223
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=92.42 E-value=0.59 Score=37.17 Aligned_cols=61 Identities=26% Similarity=0.434 Sum_probs=39.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhhccc-----CCCCeE-EEEccCCC-C-CCC--CcEEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLES-----DLVNLK-YVGGDMFK-A-ISP--ADAVV 207 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~-----~~~ri~-~~~gD~~~-~-~p~--~D~~~ 207 (209)
.-..||+||||||..- +-| |..++|.+|- |.+.+.+.+ ...+++ |+.++--+ + +++ +|.|+
T Consensus 76 ~K~~vLEvgcGtG~Nf----kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANF----KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred CccceEEecccCCCCc----ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence 4467899999999753 334 4567899997 555554432 345666 77777754 3 343 67764
No 224
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.26 E-value=0.39 Score=39.80 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=38.5
Q ss_pred CCeEEEecCCccHHHHH-HHHHC-CCCeEEEeec-hHHHhhccc-------CCCCeEEEEccCCC---CCCCCcEEEe
Q 046346 144 LNSLVDVGGGTGTAAKA-IAKAF-PKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK---AISPADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~-l~~~~-P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~---~~p~~D~~~l 208 (209)
+.+|+=||+|+=-++.- +++++ ++.+++++|+ |+.++.+++ +..+++|+.+|..+ ++-.+|+|++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 46999999997666654 44443 7888999999 777777764 47899999999875 3455899986
No 225
>PRK10742 putative methyltransferase; Provisional
Probab=92.05 E-value=0.55 Score=38.28 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=53.1
Q ss_pred HHHHHhccccccCC--CeEEEecCCccHHHHHHHHHCCCCeEEEeechHHH-h-------hccc-------CCCCeEEEE
Q 046346 131 SVMIQKCKNVFEGL--NSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVV-N-------GLES-------DLVNLKYVG 193 (209)
Q Consensus 131 ~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~-~-------~a~~-------~~~ri~~~~ 193 (209)
+.++++.. +.+. .+|||.=+|.|..+..++.+ +.+++.++...++ . .+.. ...|++.+.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 55677765 4443 39999999999999999999 6669999984333 2 2210 125899999
Q ss_pred ccCCC---CCCC-CcEEEe
Q 046346 194 GDMFK---AISP-ADAVVL 208 (209)
Q Consensus 194 gD~~~---~~p~-~D~~~l 208 (209)
+|..+ ..+. +|+|+|
T Consensus 152 ~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYL 170 (250)
T ss_pred CcHHHHHhhCCCCCcEEEE
Confidence 99765 3444 899987
No 226
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=91.41 E-value=0.35 Score=38.50 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=38.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCC-CCCC-----CcEEEeC
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AISP-----ADAVVLK 209 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~-~~p~-----~D~~~l~ 209 (209)
.-++||||+-+...... .++-..++-+||.+. .+.| ...||++ |+|. +|+|.+|
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~-------~~~I--~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ-------HPGI--LQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC-------CCCc--eeeccccCCCCCCcccceeEEEEE
Confidence 36999999987664433 366677888887541 2333 7889999 7872 8998764
No 227
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=90.53 E-value=0.72 Score=38.52 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=47.4
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHhhccc-----------------------------
Q 046346 143 GLNSLVDVGGGTGT----AAKAIAKAFP----KLECTCFDL-PHVVNGLES----------------------------- 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~----~~~~l~~~~P----~l~~~~~Dl-p~v~~~a~~----------------------------- 184 (209)
+.-+|+..||+||. +++.+.+..+ +.++++-|+ +.+++.|++
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999996 3444555443 357899999 677776652
Q ss_pred -------CCCCeEEEEccCCC-CCC--C-CcEEEe
Q 046346 185 -------DLVNLKYVGGDMFK-AIS--P-ADAVVL 208 (209)
Q Consensus 185 -------~~~ri~~~~gD~~~-~~p--~-~D~~~l 208 (209)
...+|+|..+|.++ ++| . +|+|+.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~c 229 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFC 229 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeH
Confidence 12578999999998 454 3 999975
No 228
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=0.49 Score=35.56 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=44.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcc-----c-CCCCeEEEEccCCC-CCCC
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE-----S-DLVNLKYVGGDMFK-AISP 202 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~-----~-~~~ri~~~~gD~~~-~~p~ 202 (209)
.+..+++|+|.|.|.+..+.++.. -...+++++ |..+..++ . ...+.+|..-|.++ ++..
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 345899999999999999998886 456788998 55554433 1 46778888888887 5544
No 229
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=90.44 E-value=0.52 Score=37.08 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=45.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCCCcEEEeC
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPADAVVLK 209 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~~D~~~l~ 209 (209)
..++|||.|.|+|..+++.++..-.- ++.-|. |..++.++- ..-.|.++..|.--+-|.+|++++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~-v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~Lag 149 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAE-VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAG 149 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHH-HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEee
Confidence 46999999999999999988875432 333333 555544431 3456888888876644448998763
No 230
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=90.35 E-value=0.59 Score=31.91 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=20.2
Q ss_pred HHhCCCCC-CCCCceecCHhhhhhhcCC
Q 046346 59 LVSSGNNN-DEEQGYVLTNASKLLLKDN 85 (209)
Q Consensus 59 L~~~g~~e-~~~~~y~~t~~s~~l~~~~ 85 (209)
|...|+++ ...|.|.+|+.|+.+...+
T Consensus 64 L~~aGli~~~~rG~~~iT~~G~~~l~~~ 91 (92)
T PF14338_consen 64 LKKAGLIERPKRGIWRITEKGRKALAEH 91 (92)
T ss_pred HHHCCCccCCCCCceEECHhHHHHHhhC
Confidence 77788866 4678999999997555433
No 231
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=89.87 E-value=2.1 Score=34.34 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=53.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc----CCCCeEEEEccCCC---CCCC--CcEEE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----DLVNLKYVGGDMFK---AISP--ADAVV 207 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~----~~~ri~~~~gD~~~---~~p~--~D~~~ 207 (209)
..+..+||.||=|-|.+...+.++-|..+.|+---|.|.+.-+. ..++|....|-+-+ .+|. +|=|+
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 36789999999999999999999999999998888999988775 46778888875544 4554 66544
No 232
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.78 E-value=0.32 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAF 165 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~ 165 (209)
...+++||||||.|.++..++++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~ 139 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN 139 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC
Confidence 456899999999999999999984
No 233
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=89.78 E-value=0.75 Score=39.18 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=38.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------------CCCeEEEEccCCC
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------------LVNLKYVGGDMFK 198 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~--------------~~ri~~~~gD~~~ 198 (209)
+..+|||+|||.|.-+.-..+.. --..+++|+ +..++.|++ . .-...|+.+|-|.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~ 132 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS 132 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc
Confidence 67899999999999999888763 235789999 566776653 0 1245678888775
No 234
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=89.64 E-value=0.67 Score=40.39 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=51.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhccc-------CCCCeEEEEccCCCC----CC---CCcEEE
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKA----IS---PADAVV 207 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~~----~p---~~D~~~ 207 (209)
.++|||+=|=||.++...+.. +. ++|.+|+ ..+++-|++ ..+++.|+.+|.|+- .. .+|+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 789999999999999998887 44 6888999 577777775 257899999999972 22 399998
Q ss_pred e
Q 046346 208 L 208 (209)
Q Consensus 208 l 208 (209)
|
T Consensus 296 l 296 (393)
T COG1092 296 L 296 (393)
T ss_pred E
Confidence 7
No 235
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.54 E-value=1.1 Score=36.23 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=36.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhh----cccCCCCeEEEEccCCCCCCC-----CcEEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HVVNG----LESDLVNLKYVGGDMFKAISP-----ADAVV 207 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp-~v~~~----a~~~~~ri~~~~gD~~~~~p~-----~D~~~ 207 (209)
..++|+=|| -.=..+++++-.++..+++|+|+. ..++- |++..-.|+.+.+|+.+++|. ||+++
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEE
Confidence 458999999 455667777777888899999994 44443 333444599999999999884 79886
No 236
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=89.28 E-value=1.1 Score=37.89 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=40.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeechHH-Hhhccc-------CCC----CeEEEEccCCC
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDLPHV-VNGLES-------DLV----NLKYVGGDMFK 198 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dlp~v-~~~a~~-------~~~----ri~~~~gD~~~ 198 (209)
+....++|+|||-|.-++-.-++ .+ ..++.|+.+| |++|++ ..+ .+.|+.+|=|.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 56788999999999998887765 33 4689999654 777774 112 46788888664
No 237
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=88.91 E-value=2 Score=36.40 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=39.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC----CCeEEEeech-HHHhhccc-----CCCCeEE--EEccCCC
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFP----KLECTCFDLP-HVVNGLES-----DLVNLKY--VGGDMFK 198 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P----~l~~~~~Dlp-~v~~~a~~-----~~~ri~~--~~gD~~~ 198 (209)
....|||+|||+|.-...|++... ..+.+.+|+. +.++.+.. ..+.+++ +.+||.+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 456899999999998887776653 4678999994 45554432 2244555 8899976
No 238
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=88.81 E-value=0.13 Score=35.82 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=20.2
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeechH----HHhhccc--CCCCeEEEEccCCC---CCC--CCcEEEe
Q 046346 148 VDVGGGTGTAAKAIAKAFPKL---ECTCFDLPH----VVNGLES--DLVNLKYVGGDMFK---AIS--PADAVVL 208 (209)
Q Consensus 148 lDvGgG~G~~~~~l~~~~P~l---~~~~~Dlp~----v~~~a~~--~~~ri~~~~gD~~~---~~p--~~D~~~l 208 (209)
|+||+..|..+..+++..+.. +++.+|..+ +-+..++ ..++++++.+|+.+ .++ .+|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 689999999999988887765 578899843 2222222 46789999999865 233 3787764
No 239
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=88.66 E-value=1.1 Score=37.68 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=35.0
Q ss_pred CCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEEc----cCCCC
Q 046346 144 LNSLVDVGGGTGTA-AKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGG----DMFKA 199 (209)
Q Consensus 144 ~~~vlDvGgG~G~~-~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~g----D~~~~ 199 (209)
..+++|||+|.-.+ .+--++. .+.++++-|+ +..++.|++ +.+||+.+.. ++|..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~ 170 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDG 170 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTT
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchh
Confidence 57899999998855 3444444 4899999999 677777764 5778888654 46653
No 240
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=88.44 E-value=1.9 Score=38.56 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=48.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc----C-CCCeEEEEccCCC---CCCC-CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES----D-LVNLKYVGGDMFK---AISP-ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~----~-~~ri~~~~gD~~~---~~p~-~D~~~l 208 (209)
....+|||+++++|.=+..++....+ -..+..|+ +.-++..++ . ..+|.....|..+ .+|. +|.|++
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 45689999999999999999998865 47788998 344443332 2 3567777777653 3455 899885
No 241
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.42 E-value=3.6 Score=33.19 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=51.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeech-HHHhhccc------CCCCeEEEEccCCCCC--------CC-C
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDLP-HVVNGLES------DLVNLKYVGGDMFKAI--------SP-A 203 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dlp-~v~~~a~~------~~~ri~~~~gD~~~~~--------p~-~ 203 (209)
.-++++++|||.=+|.-+.+++.+-|.- +++.+|.+ ...+.+.+ ....|+++.|+..+.+ ++ +
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 4468999999999999999999999984 67888883 33333322 5789999999887632 23 7
Q ss_pred cEEEe
Q 046346 204 DAVVL 208 (209)
Q Consensus 204 D~~~l 208 (209)
|.+++
T Consensus 151 DfaFv 155 (237)
T KOG1663|consen 151 DFAFV 155 (237)
T ss_pred eEEEE
Confidence 87775
No 242
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=88.16 E-value=2 Score=33.56 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=47.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC------CCCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA------ISPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~------~p~~D~~~l 208 (209)
...++||+=+|||.++.+.+.|+-. +++.+|. ..+....++ ...++..+..|.+.- .+++|+|++
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 3689999999999999999988533 5778887 444444432 347888999987741 223899986
No 243
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=88.03 E-value=2 Score=33.12 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=41.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc----C----CCCeEEEEccCCC
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----D----LVNLKYVGGDMFK 198 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~----~----~~ri~~~~gD~~~ 198 (209)
++...||-+|||-=+....+...+++.+.+=+|+|+|++.-++ . ..+.++++.|+.+
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 4566999999999999999999999999999999999875443 1 1235689999985
No 244
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=87.85 E-value=2.2 Score=36.72 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHHHhhhHhhHHHHHHhccc-cccCCCeEEEecCCccHHHHHHHHH----CC----CCeEEEeechHHH
Q 046346 111 EPKLNNFFNEAMASDARLATSVMIQKCKN-VFEGLNSLVDVGGGTGTAAKAIAKA----FP----KLECTCFDLPHVV 179 (209)
Q Consensus 111 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~----~P----~l~~~~~Dlp~v~ 179 (209)
-|+....|...++. ++++.+.. ..+....+|++|.|+|.++.-+++. +| .+++.+++..+-+
T Consensus 51 Apels~lFGella~-------~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 51 APELSQLFGELLAE-------QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred chhHHHHHHHHHHH-------HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 46777777777653 33333331 1345678999999999999877665 45 5677888874333
No 245
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=87.17 E-value=0.52 Score=39.37 Aligned_cols=67 Identities=21% Similarity=0.387 Sum_probs=50.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCC--CCc
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS--PAD 204 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p--~~D 204 (209)
.++++.++-||||.|-+.++..+. +.+. ...+|. ..|++...+ ..+||..+.||=|. ..+ .+|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999999887 7774 677887 455555443 46899999999443 343 388
Q ss_pred EEEe
Q 046346 205 AVVL 208 (209)
Q Consensus 205 ~~~l 208 (209)
+++.
T Consensus 198 Vii~ 201 (337)
T KOG1562|consen 198 VIIT 201 (337)
T ss_pred EEEE
Confidence 8874
No 246
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=86.27 E-value=1 Score=36.49 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=48.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEEccCCC---CCCC--CcEEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK---AISP--ADAVV 207 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~---~~p~--~D~~~ 207 (209)
....+|||...|-|..+++.+++.-- .++-++- |.|++.|.- ...+|+.+.||.++ .++. +|+++
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~-~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAI-HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCc-EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 46789999999999999999999542 3443443 888877652 23479999999887 4664 78875
No 247
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.26 E-value=1.3 Score=36.40 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=32.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeech
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF-----PKLECTCFDLP 176 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~-----P~l~~~~~Dlp 176 (209)
+.+...+|+.|||.|.++..+++.. +..+++++|+.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 5567899999999999999999999 56789999984
No 248
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=86.10 E-value=0.65 Score=37.63 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=33.9
Q ss_pred HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCceecCHhh
Q 046346 37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQGYVLTNAS 78 (209)
Q Consensus 37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~y~~t~~s 78 (209)
-+.|.+.|.....|.|+.|||+ |+..|+++.++++|.+++.-
T Consensus 11 al~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~~~~Y~lG~~~ 67 (248)
T TIGR02431 11 GLAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSDGRLFWLTPRV 67 (248)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEEecHHH
Confidence 3557788876557899999999 77899977777899999864
No 249
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=85.60 E-value=0.72 Score=37.81 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=40.6
Q ss_pred HHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCceecCHhhhhhhc
Q 046346 32 LKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQGYVLTNASKLLLK 83 (209)
Q Consensus 32 l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~y~~t~~s~~l~~ 83 (209)
+....+.+|+=.|.+ ||.|.+||-. |...|+++.+++.|++|+.|..++.
T Consensus 10 f~SekRk~lLllL~e--gPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV~~~~~~Y~LS~~G~iiv~ 74 (260)
T COG4742 10 FLSEKRKDLLLLLKE--GPKTIEEIKNELNVSSSAILPQIKKLKDKGLVVQEGDRYSLSSLGKIIVE 74 (260)
T ss_pred HccHHHHHHHHHHHh--CCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCEEecCCEEEecchHHHHHH
Confidence 344567778888887 8999999988 6678888888999999999987654
No 250
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=84.55 E-value=2.3 Score=35.53 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=48.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C-CCCeEEEEccCCCCC------CCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D-LVNLKYVGGDMFKAI------SPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~-~~ri~~~~gD~~~~~------p~~D~~~l 208 (209)
..++|||+=|=||.++...+.. -..+++.+|. ..+++.+++ . .++++|+.+|.|+-+ ..+|+|+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999987654 3457899999 577777764 2 468999999998722 23999986
No 251
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=84.04 E-value=2.4 Score=36.28 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=52.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC--CC-CCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AI-SPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~--~~-p~~D~~~l 208 (209)
...+|||.=+|-|.+++.+++...-. ++..|+ |..++..++ ..++|+.+.||..+ ++ +.||-++|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEe
Confidence 47999999999999999999886555 999999 887776553 46779999999887 33 44888876
No 252
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=83.01 E-value=0.38 Score=29.05 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=17.4
Q ss_pred cCchhHhhhCCCCCCHHHHHH
Q 046346 38 LGIPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 38 lglfd~L~~~g~~~t~~eLA~ 58 (209)
+.|++.|...++++|+.|||+
T Consensus 6 l~iL~~l~~~~~~~t~~eia~ 26 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIAR 26 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHH
Confidence 457888888767789999999
No 253
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=82.85 E-value=1.8 Score=35.11 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=25.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCC--------CeEEEeech
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPK--------LECTCFDLP 176 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~--------l~~~~~Dlp 176 (209)
.-+|+++|+|+|.++..+++.... ++.++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S 59 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS 59 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence 479999999999999998887543 478889874
No 254
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=82.72 E-value=11 Score=28.47 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 116 NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 116 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|.+-|..... -..+...... .-..-|+|+|=|+|..=..|.+.+|+=+++|+|+
T Consensus 5 Dsfi~RmtaQR~-~L~~a~~~v~---~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 5 DSFIRRMTAQRD-CLNWAAAQVA---GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHTT---T--S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred HHHHHHHHHHHH-HHHHHHHHhc---CCCCceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 445555543222 2233344333 2347899999999999999999999999999998
No 255
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=82.32 E-value=4 Score=32.38 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCCeEEEecCCcc---HHHHHHHHHC-CCCeEEEeech---HHHhhcc--cCCCCeEEEEccCCC
Q 046346 143 GLNSLVDVGGGTG---TAAKAIAKAF-PKLECTCFDLP---HVVNGLE--SDLVNLKYVGGDMFK 198 (209)
Q Consensus 143 ~~~~vlDvGgG~G---~~~~~l~~~~-P~l~~~~~Dlp---~v~~~a~--~~~~ri~~~~gD~~~ 198 (209)
++.+|+++|--.| .+...+++.. ++.+++.+|+. ...+..+ ...+||+++.||-.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID 96 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence 5789999996554 4445566666 88899999982 2221111 146899999999765
No 256
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=81.98 E-value=2.6 Score=33.66 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=36.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C---CCCe-EEEEc---cCCCCCCC-CcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D---LVNL-KYVGG---DMFKAISP-ADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~---~~ri-~~~~g---D~~~~~p~-~D~~~l 208 (209)
+..+.||.|+|.|.++..++-.+= -++-++|- +.-++.|++ + ..++ ++... || +|.+. +|+|+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f-~P~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF-TPEEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc-cCCCCcEeEEEe
Confidence 468999999999999998765431 13444554 667777774 2 1232 33332 33 35544 999975
No 257
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=81.88 E-value=2.4 Score=34.34 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~ 184 (209)
....++||||+-|++...|..+. --+.+..|. ..+++.++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRD 113 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhc
Confidence 46899999999999999999886 225788888 578887764
No 258
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=81.84 E-value=1.6 Score=35.89 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=37.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC-CCcEEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS-PADAVV 207 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p-~~D~~~ 207 (209)
...++||||.|.|.++..++..+.++.+| +. +.|...-+ ...++.+..|=+..-+ .+|+|-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aT--E~S~~Mr~rL~--~kg~~vl~~~~w~~~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYAT--EASPPMRWRLS--KKGFTVLDIDDWQQTDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEee--cCCHHHHHHHH--hCCCeEEehhhhhccCCceEEEe
Confidence 45789999999999999999999885543 43 44443322 2334444433222222 267663
No 259
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=80.15 E-value=2.3 Score=28.38 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=30.6
Q ss_pred HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC--CCCceecCHhh
Q 046346 37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNND--EEQGYVLTNAS 78 (209)
Q Consensus 37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~--~~~~y~~t~~s 78 (209)
-+.|++.|...+++.|+.|||+ |...|+++. .++.|.+++..
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~ 65 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHH
Confidence 3556778876535899999999 678888543 46779888853
No 260
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=77.32 E-value=5 Score=28.00 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=32.5
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhcccCC--CC---eEEEEccCCC
Q 046346 147 LVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLESDL--VN---LKYVGGDMFK 198 (209)
Q Consensus 147 vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~~--~r---i~~~~gD~~~ 198 (209)
++|+|||+|... .+.+..+. ...+.+|. +.++..++... .. +.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999987 44444444 36677887 44455433211 11 5788888764
No 261
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=76.56 E-value=1.9 Score=35.88 Aligned_cols=61 Identities=21% Similarity=0.121 Sum_probs=40.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhcccCCCCeEEEEccCCC-CCCC--CcEE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HVVNGLESDLVNLKYVGGDMFK-AISP--ADAV 206 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp-~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~ 206 (209)
.+....++|+|||.|.+.. .+|.+..+..|+. ..+..++.... ....-.|..+ |.+. +|..
T Consensus 43 ~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~-~~~~~ad~l~~p~~~~s~d~~ 107 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGG-DNVCRADALKLPFREESFDAA 107 (293)
T ss_pred cCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCC-ceeehhhhhcCCCCCCccccc
Confidence 3457899999999998764 3488889999994 55666663222 1445667766 4433 5543
No 262
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=76.21 E-value=7.8 Score=33.79 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCCeEEEecCCccHHHH--------HHHHHC-------CCCeEEEeech
Q 046346 143 GLNSLVDVGGGTGTAAK--------AIAKAF-------PKLECTCFDLP 176 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~--------~l~~~~-------P~l~~~~~Dlp 176 (209)
+.-+|+|+|||+|..+. .+.+++ |++++..=|+|
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP 111 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLP 111 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Confidence 46789999999996653 333433 56788888886
No 263
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=75.47 E-value=5.1 Score=35.55 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=38.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVG 193 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~ 193 (209)
.+...+||||.|||.++.-.+++.-+ +++.++. .++.+.|++ ..++|+.+.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 35678999999999999999998854 3777776 677777775 345565554
No 264
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=75.46 E-value=2.5 Score=34.37 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=30.6
Q ss_pred cCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCC--CCceecCHhh
Q 046346 38 LGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDE--EQGYVLTNAS 78 (209)
Q Consensus 38 lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~--~~~y~~t~~s 78 (209)
+.|++.|...+.++++.|||+ |+..|+++.+ .++|.+++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHH
Confidence 557788877434467999999 7889996644 4689999964
No 265
>PRK11569 transcriptional repressor IclR; Provisional
Probab=73.64 E-value=3.6 Score=33.89 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=31.3
Q ss_pred cCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC--CCCceecCHhh
Q 046346 38 LGIPDIINKHGKPMTLNELQK---------------LVSSGNNND--EEQGYVLTNAS 78 (209)
Q Consensus 38 lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~--~~~~y~~t~~s 78 (209)
+.|++.|.+...++|+.|||+ |+..|+++. ..++|.+++..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEecCHHH
Confidence 456777776547899999999 778999653 45889998853
No 266
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=72.84 E-value=2.4 Score=27.84 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=24.8
Q ss_pred CCCCHHHHHH---------------HHhCCCCCCCCCceecCHhhhhhh
Q 046346 49 KPMTLNELQK---------------LVSSGNNNDEEQGYVLTNASKLLL 82 (209)
Q Consensus 49 ~~~t~~eLA~---------------L~~~g~~e~~~~~y~~t~~s~~l~ 82 (209)
++.+..+|+. |...|+++..++.|.+|+.|.-+.
T Consensus 18 ~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI~~~~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 18 GGAKKTEIMYKANLNYSTLKKYLKELEEKGLIKKKDGKYRLTEKGKEFL 66 (77)
T ss_dssp T-B-HHHHHTTST--HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCeeCCCCEEEECccHHHHH
Confidence 5677777766 788999888899999999996443
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=72.31 E-value=5.7 Score=33.96 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=43.1
Q ss_pred ccCCCeEEEecC-CccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEE---ccCCCCCCC-CcEEE
Q 046346 141 FEGLNSLVDVGG-GTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG---GDMFKAISP-ADAVV 207 (209)
Q Consensus 141 ~~~~~~vlDvGg-G~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~---gD~~~~~p~-~D~~~ 207 (209)
..+..+|+-+|. |-|+++.+++++.- .+++++|+ ++-.+.|+++.... ++. .|+.++.+. +|+++
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~-~i~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADH-VINSSDSDALEAVKEIADAII 234 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcE-EEEcCCchhhHHhHhhCcEEE
Confidence 445566666664 68899999999877 99999999 56677777643222 233 344444444 77765
No 268
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=72.28 E-value=7.2 Score=33.97 Aligned_cols=68 Identities=15% Similarity=0.286 Sum_probs=47.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec---hHHHhhccc------------CCCCeEEEEccCCCC------
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL---PHVVNGLES------------DLVNLKYVGGDMFKA------ 199 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl---p~v~~~a~~------------~~~ri~~~~gD~~~~------ 199 (209)
.......+|+|+|-|.....++...-.-..+++.+ |.-...... ....++.+.|+|..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 55678999999999999998888776666666665 433322221 135688899999873
Q ss_pred CCCCcEEEe
Q 046346 200 ISPADAVVL 208 (209)
Q Consensus 200 ~p~~D~~~l 208 (209)
+++++++++
T Consensus 270 ~~eatvi~v 278 (419)
T KOG3924|consen 270 QTEATVIFV 278 (419)
T ss_pred hhcceEEEE
Confidence 345787764
No 269
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=72.19 E-value=5.4 Score=26.69 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=26.6
Q ss_pred HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCC-------CceecCHhhhhhh
Q 046346 37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEE-------QGYVLTNASKLLL 82 (209)
Q Consensus 37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~-------~~y~~t~~s~~l~ 82 (209)
++.++..|... +++|..+|++ |...|+++... ..|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 34455556553 4677777776 77788743211 2577888775443
No 270
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=70.42 E-value=12 Score=34.64 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=36.0
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCe-EEEeech
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDLP 176 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dlp 176 (209)
.-++-+.|. .+.....|||+||.+|.++.-.++..|--+ ++++|+.
T Consensus 32 LlQln~ky~-fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~ 78 (780)
T KOG1098|consen 32 LLQLNKKYK-FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLV 78 (780)
T ss_pred HHHHHHHhc-cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeee
Confidence 344455664 346789999999999999999999999654 5889983
No 271
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=68.86 E-value=7.8 Score=26.47 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=34.8
Q ss_pred HHHHcCchhHhhhC-CCCCCHHHHHH-------------------------HHhCCCC-C----CCCCceecCHhhhhhh
Q 046346 34 CSIQLGIPDIINKH-GKPMTLNELQK-------------------------LVSSGNN-N----DEEQGYVLTNASKLLL 82 (209)
Q Consensus 34 ~a~~lglfd~L~~~-g~~~t~~eLA~-------------------------L~~~g~~-e----~~~~~y~~t~~s~~l~ 82 (209)
.=++..|+..|... ..+.++.|||. |+.+|++ + .+.-.|++|+.+..++
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~G~~~~ 87 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGSDYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEKGKRIA 87 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCCCHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChhhhhHH
Confidence 34566677777766 57899999999 7888886 2 2223689999886443
No 272
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=68.39 E-value=28 Score=28.21 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=45.1
Q ss_pred HHHHHhccccccC--CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhh--------ccc-------CCCCeEEEE
Q 046346 131 SVMIQKCKNVFEG--LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG--------LES-------DLVNLKYVG 193 (209)
Q Consensus 131 ~~~~~~~~~~~~~--~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~--------a~~-------~~~ri~~~~ 193 (209)
+.++++.. +.+ ..+|||.=+|-|.-+.-++.. +.+++.++...++.. +.. ...||+.+.
T Consensus 63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 55667665 333 259999999999999988865 568999998655432 111 125999999
Q ss_pred ccCCC--CCCC--CcEEEe
Q 046346 194 GDMFK--AISP--ADAVVL 208 (209)
Q Consensus 194 gD~~~--~~p~--~D~~~l 208 (209)
+|..+ .+|. +|+|+|
T Consensus 139 ~d~~~~L~~~~~s~DVVY~ 157 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYF 157 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE
T ss_pred CCHHHHHhhcCCCCCEEEE
Confidence 99887 3432 899986
No 273
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=68.07 E-value=11 Score=35.18 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=35.0
Q ss_pred hhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEE---Eeec
Q 046346 128 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECT---CFDL 175 (209)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~---~~Dl 175 (209)
...+.+++.+. -...-.+-+|-|+|.++..+++.||..+++ ++++
T Consensus 310 YKlRsIL~~~~---i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~ 357 (675)
T PF14314_consen 310 YKLRSILKNLN---IKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLEL 357 (675)
T ss_pred hhHHHHHHhcC---CCcceeEEEecCchHHHHHHHHhCcccceeeeccccc
Confidence 34566777665 344677899999999999999999999984 5554
No 274
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=67.91 E-value=11 Score=31.74 Aligned_cols=38 Identities=37% Similarity=0.589 Sum_probs=29.0
Q ss_pred CCeEEEecCCccHHHHHHHHHC--------------------CCCeEEEeec---hHHHhh
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAF--------------------PKLECTCFDL---PHVVNG 181 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~--------------------P~l~~~~~Dl---p~v~~~ 181 (209)
..+||-||||.|.=..+++..+ |.+..+++|+ ..|++.
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~ 147 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDR 147 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHH
Confidence 3799999999998888777766 2367899998 455543
No 275
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=67.54 E-value=6.6 Score=28.61 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=20.9
Q ss_pred HcCchhHhh-hCCCCCCHHHHHH---------------HHhCCCCC
Q 046346 37 QLGIPDIIN-KHGKPMTLNELQK---------------LVSSGNNN 66 (209)
Q Consensus 37 ~lglfd~L~-~~g~~~t~~eLA~---------------L~~~g~~e 66 (209)
+..++-+|- .+ +|.|+++||+ |..+|+++
T Consensus 29 Dv~v~~~LL~~~-~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~ 73 (126)
T COG3355 29 DVEVYKALLEEN-GPLTVDELAEILNRSRSTVYRSLQNLLEAGLVE 73 (126)
T ss_pred HHHHHHHHHhhc-CCcCHHHHHHHHCccHHHHHHHHHHHHHcCCee
Confidence 344555555 44 7999999999 77888754
No 276
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=67.12 E-value=6.6 Score=32.10 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=32.2
Q ss_pred HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC--CCCceecCHhhh
Q 046346 37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNND--EEQGYVLTNASK 79 (209)
Q Consensus 37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~--~~~~y~~t~~s~ 79 (209)
-+.|++.|...+++.|..|||+ |...|+++. ..++|.+++...
T Consensus 13 al~iL~~l~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~ 72 (263)
T PRK09834 13 GLMVLRALNRLDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVR 72 (263)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHH
Confidence 3456777766545799999999 778898653 467899998654
No 277
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=66.91 E-value=6.3 Score=32.44 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=31.3
Q ss_pred cCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC--CCCceecCHhh
Q 046346 38 LGIPDIINKHGKPMTLNELQK---------------LVSSGNNND--EEQGYVLTNAS 78 (209)
Q Consensus 38 lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~--~~~~y~~t~~s 78 (209)
+.|++.|...+.+.|+.|||+ |+..|+++. ..++|.++..-
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEEecHHH
Confidence 456777776556899999999 788998653 56789999853
No 278
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=66.12 E-value=26 Score=28.66 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=41.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhhccc--------CCCCeEEEEccCCC
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFK 198 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dlp~v~~~a~~--------~~~ri~~~~gD~~~ 198 (209)
.+...||.+|||-=.-.-.+. .| +++..=+|+|+|++.-++ ...+..+++.|+.+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred cCCcEEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 456789999999887777663 33 577888888999875332 25689999999874
No 279
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=65.16 E-value=7 Score=24.97 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=28.7
Q ss_pred HHcCchhHhhhCCC-CCCHHHHHH---------------HHhCCCCCC---CCCceecCH
Q 046346 36 IQLGIPDIINKHGK-PMTLNELQK---------------LVSSGNNND---EEQGYVLTN 76 (209)
Q Consensus 36 ~~lglfd~L~~~g~-~~t~~eLA~---------------L~~~g~~e~---~~~~y~~t~ 76 (209)
.+-.|+..|...|+ ++|+.|||+ |...|+++. .++.|.++.
T Consensus 7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~ 66 (68)
T smart00550 7 LEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGGTPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCceEeec
Confidence 45567888888744 399999999 567787543 336777654
No 280
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=65.05 E-value=8.4 Score=34.14 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=27.7
Q ss_pred CeEEEecCC-ccHHHH-HHHHHCCCCeEEEeechH
Q 046346 145 NSLVDVGGG-TGTAAK-AIAKAFPKLECTCFDLPH 177 (209)
Q Consensus 145 ~~vlDvGgG-~G~~~~-~l~~~~P~l~~~~~Dlp~ 177 (209)
..|+-|||| +|..+. .|+++.|..+++++|...
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 579999999 788777 688888999999999743
No 281
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=64.84 E-value=8.8 Score=31.36 Aligned_cols=38 Identities=29% Similarity=0.446 Sum_probs=28.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhh
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG 181 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~ 181 (209)
....+|.+|.|+| +...++..+....++.-|.|.++..
T Consensus 86 ~~~~vlELGsGtg-lvG~~aa~~~~~~v~ltD~~~~~~~ 123 (248)
T KOG2793|consen 86 KYINVLELGSGTG-LVGILAALLLGAEVVLTDLPKVVEN 123 (248)
T ss_pred cceeEEEecCCcc-HHHHHHHHHhcceeccCCchhhHHH
Confidence 4568999999999 4455555567788889998876654
No 282
>PRK09273 hypothetical protein; Provisional
Probab=64.78 E-value=15 Score=29.17 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=32.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcc
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLE 183 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~ 183 (209)
++.....-++||||.-..-.+.++|++++-+.--|.....++
T Consensus 61 ~g~~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar 102 (211)
T PRK09273 61 SKAVDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFA 102 (211)
T ss_pred cCCCCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHH
Confidence 455667889999999999999999999975444465555555
No 283
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=64.39 E-value=6.6 Score=31.91 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=30.2
Q ss_pred cCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC--CCCceecCHhh
Q 046346 38 LGIPDIINKHGKPMTLNELQK---------------LVSSGNNND--EEQGYVLTNAS 78 (209)
Q Consensus 38 lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~--~~~~y~~t~~s 78 (209)
+.|.+.|... ++.|+.|||+ |+..|+++. ..++|.+++..
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~~~~Y~lG~~~ 73 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKL 73 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEecHHH
Confidence 4456666654 5899999999 788999653 45889999864
No 284
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=62.55 E-value=17 Score=26.91 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=35.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc-CCCCeEEEEccC
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-DLVNLKYVGGDM 196 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-~~~ri~~~~gD~ 196 (209)
++....--+.||||.-..-.+.++|++++.+.--|.....+++ ...+|=.+.+.+
T Consensus 54 ~~~~d~GIliCgtGiG~~iaANK~~GIrAa~~~d~~~A~~ar~hNdaNVL~lG~~~ 109 (140)
T PF02502_consen 54 SGEADRGILICGTGIGMSIAANKVPGIRAALCSDPYSAKMAREHNDANVLCLGARV 109 (140)
T ss_dssp TTSSSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT--SEEEEETTT
T ss_pred cccCCeEEEEcCCChhhhhHhhcCCCEEEEeeCCHHHHHHHHHhcCCcEEEechhh
Confidence 3444557789999999999999999999866666777777664 234444444443
No 285
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=62.28 E-value=41 Score=26.43 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=37.9
Q ss_pred CCeEEEecCCccHHHH--HHHHHCCCCeEEEeec---hHHHhhcccCCCCeEEEEccCCC-CCCCCcEEEe
Q 046346 144 LNSLVDVGGGTGTAAK--AIAKAFPKLECTCFDL---PHVVNGLESDLVNLKYVGGDMFK-AISPADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~--~l~~~~P~l~~~~~Dl---p~v~~~a~~~~~ri~~~~gD~~~-~~p~~D~~~l 208 (209)
.+++|-||||.=.... .|++. +.++++++- ++..+.+. ..+++++.++|-. .+..+|+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~--~~~i~~~~~~~~~~dl~~~~lVi~ 75 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAE--QGGITWLARCFDADILEGAFLVIA 75 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHH--cCCEEEEeCCCCHHHhCCcEEEEE
Confidence 4789999999754443 34444 346677764 22222222 4589999998864 3555788765
No 286
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=60.44 E-value=21 Score=26.62 Aligned_cols=42 Identities=19% Similarity=0.040 Sum_probs=32.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
+....--+.||||.-..-.+.++|++++.+.--+.....++.
T Consensus 54 g~~~~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~ 95 (144)
T TIGR00689 54 GEVSLGILICGTGIGMSIAANKFKGIRAALCVDEYTAALARQ 95 (144)
T ss_pred CCCceEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 344556688999999999999999999865555666666664
No 287
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=59.72 E-value=25 Score=29.73 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=34.3
Q ss_pred ecCCccHHHH----HHHHHCCCCeEEEeec------hHHHhhcccCCCCeEEEEccCCC
Q 046346 150 VGGGTGTAAK----AIAKAFPKLECTCFDL------PHVVNGLESDLVNLKYVGGDMFK 198 (209)
Q Consensus 150 vGgG~G~~~~----~l~~~~P~l~~~~~Dl------p~v~~~a~~~~~ri~~~~gD~~~ 198 (209)
|=||.|.++. .+++++|+.+++++|. .+.+.... ..+|++|+.+|..+
T Consensus 5 VTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~-~~~~~~fv~~DI~D 62 (340)
T COG1088 5 VTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVE-DSPRYRFVQGDICD 62 (340)
T ss_pred EecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhh-cCCCceEEeccccC
Confidence 5578887766 4667799988999996 22222222 35799999999985
No 288
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=59.42 E-value=22 Score=26.46 Aligned_cols=42 Identities=17% Similarity=0.070 Sum_probs=32.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
+....--+.||||.-..-.+.++|++++.+.--+.....+++
T Consensus 55 ~~~~~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~ 96 (143)
T TIGR01120 55 GEVDGGILICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRL 96 (143)
T ss_pred CCCceEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 445556788999999999999999999865555666666663
No 289
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=59.17 E-value=10 Score=23.61 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=23.0
Q ss_pred chhHhhhCCCCCCHHHHHH---------------HHhCCCCC-------CCCCceecCHhh
Q 046346 40 IPDIINKHGKPMTLNELQK---------------LVSSGNNN-------DEEQGYVLTNAS 78 (209)
Q Consensus 40 lfd~L~~~g~~~t~~eLA~---------------L~~~g~~e-------~~~~~y~~t~~s 78 (209)
+...|...+++++..+|+. |...|+++ .....|.+|+.|
T Consensus 8 vL~~l~~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 8 VLRALAHSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHT--TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 3444442237899999988 78899843 112358888865
No 290
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=58.63 E-value=16 Score=30.39 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=27.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHH
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HVV 179 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp-~v~ 179 (209)
..++|+|+|||+|.-.+......- .++..+|.. +++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence 569999999999999887776643 667777773 444
No 291
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.43 E-value=20 Score=30.40 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=35.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeechHHHh
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAF--PKLECTCFDLPHVVN 180 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dlp~v~~ 180 (209)
+.+...||-+|||.=...-.|...+ +.++++=+|.|++++
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~ 126 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVE 126 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHH
Confidence 4578999999999999999999998 888999999998875
No 292
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=56.06 E-value=26 Score=21.47 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=21.0
Q ss_pred CCCCHHHHHH---------------HHhCCCCCCCC-CceecCH
Q 046346 49 KPMTLNELQK---------------LVSSGNNNDEE-QGYVLTN 76 (209)
Q Consensus 49 ~~~t~~eLA~---------------L~~~g~~e~~~-~~y~~t~ 76 (209)
.++|..+||+ |...|+++... +.|.+++
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISRRGRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeEEeCC
Confidence 6899999999 67788866544 7787764
No 293
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=55.85 E-value=27 Score=26.14 Aligned_cols=42 Identities=12% Similarity=-0.027 Sum_probs=32.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
+....--+-||||.-..-.+.++|++|+.+.--+.....++.
T Consensus 57 g~~~~GIliCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 98 (148)
T PRK05571 57 GEADRGILICGTGIGMSIAANKVKGIRAALCHDTYSAHLARE 98 (148)
T ss_pred CCCCEEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 334445677999999999999999999866665777777764
No 294
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=55.82 E-value=7.3 Score=24.09 Aligned_cols=28 Identities=29% Similarity=0.441 Sum_probs=21.1
Q ss_pred HHHHHHHHcCchhHhhhCCCCCCHHHHHH
Q 046346 30 MTLKCSIQLGIPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 30 ~~l~~a~~lglfd~L~~~g~~~t~~eLA~ 58 (209)
.+|.--.++.|+..|... +|+|+.+||+
T Consensus 5 ~aL~~p~R~~Il~~L~~~-~~~t~~ela~ 32 (61)
T PF12840_consen 5 KALSDPTRLRILRLLASN-GPMTVSELAE 32 (61)
T ss_dssp HHHTSHHHHHHHHHHHHC-STBEHHHHHH
T ss_pred HHhCCHHHHHHHHHHhcC-CCCCHHHHHH
Confidence 445555677788888443 7999999999
No 295
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=55.78 E-value=19 Score=29.25 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=30.4
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
...++.|+ .......++|||-.||-++..++++.-. ++..+|.
T Consensus 68 ~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~gAk-~VyavDV 110 (245)
T COG1189 68 EKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRGAK-HVYAVDV 110 (245)
T ss_pred HHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcCCc-EEEEEEc
Confidence 34456555 2246799999999999999999998322 3556664
No 296
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=55.15 E-value=44 Score=26.85 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=40.7
Q ss_pred CCCeEEEecCCccHHHH--HHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAK--AIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~--~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~~D~~~l 208 (209)
...+||-||||.=..-. .|++...+++++.-++ |++.+.+. .++|+++..+|-. .+..+++++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~--~~~i~~~~r~~~~~dl~g~~LVia 91 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK--YGNLKLIKGNYDKEFIKDKHLIVI 91 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh--CCCEEEEeCCCChHHhCCCcEEEE
Confidence 45799999999877654 3555554555554455 44444333 5789999887754 3445776653
No 297
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=54.21 E-value=12 Score=21.27 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=11.3
Q ss_pred HHhCCCCCCCCCceecC
Q 046346 59 LVSSGNNNDEEQGYVLT 75 (209)
Q Consensus 59 L~~~g~~e~~~~~y~~t 75 (209)
|...|+++...+.|..+
T Consensus 32 L~~~g~l~~~~~~~~i~ 48 (48)
T smart00419 32 LEKEGLISREGGRIVIL 48 (48)
T ss_pred HHHCCCEEEeCCEEEEC
Confidence 67788866555667653
No 298
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=52.95 E-value=81 Score=27.57 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=42.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC--CCeEEEeec-hHHHhhcccCCCCeEEEEccCCCC-------CCCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFP--KLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P--~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~-------~p~~D~~~l 208 (209)
...+++=+|+ |.++..+++..- +..++++|. |+.++..++....+.++.||..++ ...+|+++.
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 3578888888 666666666553 356888987 666665553345677899998762 123777653
No 299
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=52.59 E-value=28 Score=28.89 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=46.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhh----cccC-CCCeEEEEccCCCC----CCC-CcEEEe
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNG----LESD-LVNLKYVGGDMFKA----ISP-ADAVVL 208 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~----a~~~-~~ri~~~~gD~~~~----~p~-~D~~~l 208 (209)
....+|+|...++|.=+..+++..+ .-+.+..|+ +.-+.. ++.. ...+.....|..+. .+. +|.|++
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 4567899999999999999999998 557889998 333333 2222 45677776776542 233 787765
No 300
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=52.56 E-value=35 Score=28.65 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=83.6
Q ss_pred CchhHhhhCCCCCCHHHHHH----HHhCCCCCCCCCceecCHhhhhhhcCCCc---ccchhhhhhcCCCCCccccccCCC
Q 046346 39 GIPDIINKHGKPMTLNELQK----LVSSGNNNDEEQGYVLTNASKLLLKDNPL---SQQLRSWFQNDDPTPFGTEYDGDE 111 (209)
Q Consensus 39 glfd~L~~~g~~~t~~eLA~----L~~~g~~e~~~~~y~~t~~s~~l~~~~~~---~~~l~~~l~~~~~~~f~~~~~~~~ 111 (209)
.++..+.. ...++...|+ |...|++..++|...+|..|+.|+..-.. ...--++. +|...+++. .
T Consensus 36 d~wkIvd~--s~~plp~v~~i~~~l~~egiv~~~~g~v~~TekG~E~~e~~gi~~~~~~~C~~C-eGrgi~l~~-----f 107 (354)
T COG1568 36 DFWKIVDY--SDLPLPLVASILEILEDEGIVKIEEGGVELTEKGEELAEELGIKKKYDYTCECC-EGRGISLQA-----F 107 (354)
T ss_pred chHhhhhh--ccCCchHHHHHHHHHHhcCcEEEecCcEeehhhhHHHHHHhCCCccccccccCc-CCccccchh-----H
Confidence 34444444 2344444554 77889977777779999999877752111 01111111 222122211 1
Q ss_pred cHHHHHHHHHHHhhhH--------hhHH-----HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHH
Q 046346 112 PKLNNFFNEAMASDAR--------LATS-----VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHV 178 (209)
Q Consensus 112 ~~~~~~f~~~m~~~~~--------~~~~-----~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v 178 (209)
.+..+.|....+.... .+.+ .++=++...=...+.|+-|| -.-..+++++-..-.-++.++|+.+-
T Consensus 108 ~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDER 186 (354)
T COG1568 108 KDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDER 186 (354)
T ss_pred HHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHH
Confidence 2233333333222100 0000 00001111111347788888 55666666666655558899999543
Q ss_pred -Hh----hcccC-CCCeEEEEccCCCCCCC-----CcEEE
Q 046346 179 -VN----GLESD-LVNLKYVGGDMFKAISP-----ADAVV 207 (209)
Q Consensus 179 -~~----~a~~~-~~ri~~~~gD~~~~~p~-----~D~~~ 207 (209)
++ .|++. .++|+.+..|.-+|+|+ +|+++
T Consensus 187 li~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 187 LIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred HHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence 32 23333 45699999999999995 78764
No 301
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=51.95 E-value=54 Score=27.58 Aligned_cols=39 Identities=31% Similarity=0.493 Sum_probs=29.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC--CCeEEEeechHHH
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFP--KLECTCFDLPHVV 179 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P--~l~~~~~Dlp~v~ 179 (209)
+....+|+=+|||.-.+...+.+.+| +-++++.|-|+..
T Consensus 270 ~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqfA 310 (318)
T PF06406_consen 270 FSDIDRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQFA 310 (318)
T ss_dssp S-S-SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGGH
T ss_pred hccCCeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchhh
Confidence 55678899999999999999999987 5678888877653
No 302
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=51.70 E-value=20 Score=25.25 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=33.1
Q ss_pred HHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC----CC---CceecCHhhhhhhc
Q 046346 35 SIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNND----EE---QGYVLTNASKLLLK 83 (209)
Q Consensus 35 a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~----~~---~~y~~t~~s~~l~~ 83 (209)
..++.++..|... +++|..+||+ |...|+++. .+ -.|.+|+.|+.+..
T Consensus 28 ~~q~~iL~~l~~~-~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 28 EQQWRILRILAEQ-GSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 4455577777765 6899999999 667887432 12 25899999875543
No 303
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=51.63 E-value=14 Score=31.55 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=35.3
Q ss_pred ccCCCeEEEecCCccHHHHHHH--------HHC--------CCCeEEEeech-----HHHhhcccC------CCC--eEE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIA--------KAF--------PKLECTCFDLP-----HVVNGLESD------LVN--LKY 191 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~--------~~~--------P~l~~~~~Dlp-----~v~~~a~~~------~~r--i~~ 191 (209)
.++.-+|+|+||.+|..+..+. +++ |+..+..=|+| .+....... ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 4567899999999999877433 333 34567888886 222222111 122 455
Q ss_pred EEccCCCC-CCC--CcEE
Q 046346 192 VGGDMFKA-ISP--ADAV 206 (209)
Q Consensus 192 ~~gD~~~~-~p~--~D~~ 206 (209)
++|.|+.. +|. .|++
T Consensus 94 vpgSFy~rLfP~~Svh~~ 111 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFG 111 (334)
T ss_dssp EES-TTS--S-TT-EEEE
T ss_pred cCchhhhccCCCCceEEE
Confidence 77899985 464 4554
No 304
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=51.54 E-value=19 Score=27.27 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
+||-||||.+.+..+..-+.++.+.+++|-
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec
Confidence 478999999999999888899999988864
No 305
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=50.97 E-value=39 Score=27.55 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=27.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP 176 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp 176 (209)
..|+-||||..-++.++.-..++++++++|..
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~ 57 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERK 57 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecC
Confidence 56888999999999988888889999999963
No 306
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=50.94 E-value=1.4e+02 Score=24.44 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=45.7
Q ss_pred HHhhhHhhHHHHHHhccccccCCCeEEEecC-CccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCC
Q 046346 122 MASDARLATSVMIQKCKNVFEGLNSLVDVGG-GTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA 199 (209)
Q Consensus 122 m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGg-G~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~ 199 (209)
....+...+..+...++ -.....+|-+|+ =+|.+....+.++- +++++|. |++.+.. .++|+|+ .+..+
T Consensus 22 i~~I~ekKa~ai~~~le--~~~~k~~lI~G~YltG~~iA~~L~~~~--eV~lvDI~p~lk~ll---~~~i~F~--~~~~~ 92 (252)
T PF06690_consen 22 IKEIAEKKANAIKYWLE--GEEFKQALIFGAYLTGNFIASALSKKC--EVTLVDIHPHLKELL---NENIKFM--EFRNG 92 (252)
T ss_pred HHHHHHHHHHHHHHHhc--ccccceEEEEEEEeehHHHHHHhccCc--eEEEEeCcHHHHHHh---cCCCcee--eccCC
Confidence 34444444444555444 233458888887 46666666555544 8999999 6665542 5778887 33334
Q ss_pred CCC-CcEEE
Q 046346 200 ISP-ADAVV 207 (209)
Q Consensus 200 ~p~-~D~~~ 207 (209)
.+. .|+++
T Consensus 93 ~~~~~DlII 101 (252)
T PF06690_consen 93 LEGNPDLII 101 (252)
T ss_pred CCCCCCEEE
Confidence 444 77764
No 307
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=50.52 E-value=16 Score=25.26 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=28.0
Q ss_pred CccHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC
Q 046346 153 GTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK 198 (209)
Q Consensus 153 G~G~~~~~l~~~~--P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~ 198 (209)
|.|.++..+++.. .+.+++++|. ++.++.+++. .+.++.||..+
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--~~~~i~gd~~~ 51 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--GVEVIYGDATD 51 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--TSEEEES-TTS
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--ccccccccchh
Confidence 3345666555543 3457899998 6677766632 37899999987
No 308
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=49.66 E-value=17 Score=31.04 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=23.7
Q ss_pred eEEEecCC--ccHHHHHHHHHCCCCeEEEeech
Q 046346 146 SLVDVGGG--TGTAAKAIAKAFPKLECTCFDLP 176 (209)
Q Consensus 146 ~vlDvGgG--~G~~~~~l~~~~P~l~~~~~Dlp 176 (209)
.|+-||.| .|-.+.-++-++|+++++++|+.
T Consensus 3 kiccigagyvggptcavia~kcp~i~vtvvd~s 35 (481)
T KOG2666|consen 3 KICCIGAGYVGGPTCAVIALKCPDIEVTVVDIS 35 (481)
T ss_pred eEEEecCcccCCcchheeeecCCceEEEEEecC
Confidence 46667765 35566678889999999999983
No 309
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=49.58 E-value=27 Score=26.27 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=31.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
.....-+.||||.=..-.+.++|..++-+.--+.....+++
T Consensus 58 ~~d~GIliCGTGiG~~iaANKv~GiraAl~~D~~sA~~ar~ 98 (151)
T COG0698 58 EADLGILICGTGIGMSIAANKVPGIRAALVSDPTSAKLARE 98 (151)
T ss_pred CCCeeEEEecCChhHHHHhhccCCeEEEEecCHHHHHHHHh
Confidence 45567789999999999999999999754444666666663
No 310
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=49.46 E-value=24 Score=30.27 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=26.3
Q ss_pred cCCCeEEEecCCccHHHHH--HHHHCCCCeEEEee
Q 046346 142 EGLNSLVDVGGGTGTAAKA--IAKAFPKLECTCFD 174 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~--l~~~~P~l~~~~~D 174 (209)
+....||-||||+|.++.+ +.++.|.=++.++|
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIve 71 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVE 71 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEec
Confidence 3567899999999988775 78888887766666
No 311
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.42 E-value=22 Score=29.85 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=39.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhhccc--------CCCCeEEEEccCCC-CCC
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFK-AIS 201 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dlp~v~~~a~~--------~~~ri~~~~gD~~~-~~p 201 (209)
.+...||-+|||==.-+-.+ .+| +++..=+|+|+|++.=++ ...++++++.||++ ++|
T Consensus 91 ~g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~ 158 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWP 158 (297)
T ss_pred hcccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchH
Confidence 34789999999854433332 344 366666777999975332 13489999999994 555
No 312
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=49.17 E-value=51 Score=27.14 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=38.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEEccCCC----C-CCCCcEEEe
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFK----A-ISPADAVVL 208 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~----~-~p~~D~~~l 208 (209)
+++|+-||.|.+..++.+.. .+ +...|. +..++..+...+.. ...+|..+ . .+.+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEe
Confidence 68999999999999998874 54 466887 55555433221211 45566654 2 234788875
No 313
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=49.05 E-value=22 Score=31.12 Aligned_cols=38 Identities=24% Similarity=0.563 Sum_probs=29.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHH
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVV 179 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~ 179 (209)
+-+...+||||.|.|+++.-+.-.| ++++..+|-....
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~ 188 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRL 188 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHH
Confidence 6688999999999999998776655 5677777765443
No 314
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=48.82 E-value=14 Score=21.38 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=17.0
Q ss_pred HHcCchhHhhhCCCCCCHHHHHH
Q 046346 36 IQLGIPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 36 ~~lglfd~L~~~g~~~t~~eLA~ 58 (209)
.+..|+..|.++ +++|..|||+
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~ 25 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAE 25 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHH
Confidence 356678888886 5799999999
No 315
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=48.20 E-value=30 Score=26.63 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=31.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
+....--+-||||.-..-.+.++|++++.+.--+.....+++
T Consensus 56 g~~d~GIliCGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 97 (171)
T PRK12615 56 GQADLGVCICGTGVGINNAVNKVPGIRSALVRDMTTALYAKE 97 (171)
T ss_pred CCCCEEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 334556788999999999999999999755554666666663
No 316
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=47.76 E-value=18 Score=26.02 Aligned_cols=45 Identities=27% Similarity=0.413 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCchhHhhhCCCCCCHHHHHH----------HHhCC---CCCCCCCceecCHhhh
Q 046346 28 NSMTLKCSIQLGIPDIINKHGKPMTLNELQK----------LVSSG---NNNDEEQGYVLTNASK 79 (209)
Q Consensus 28 ~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~----------L~~~g---~~e~~~~~y~~t~~s~ 79 (209)
.-.||++| .+|... ||.+..+|++ |.... |...+.|.|.+|+.|+
T Consensus 58 RQ~Al~~A------~~L~~~-Gp~~~~~l~~~~~~~~A~~IL~~N~YGWFeRv~rGvY~LT~~G~ 115 (118)
T PF09929_consen 58 RQDALRCA------AALAEH-GPSRPADLRKATGVPKATSILRDNHYGWFERVERGVYALTPAGR 115 (118)
T ss_pred HHHHHHHH------HHHHHc-CCCCHHHHHHhcCCChHHHHHHhCcccceeeeccceEecCcchh
Confidence 34455555 456655 7999999998 33332 2335789999999885
No 317
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=47.57 E-value=28 Score=27.92 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=27.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCC--eEEEeec-hHHHhhcccCCCCeEEEEcc
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKL--ECTCFDL-PHVVNGLESDLVNLKYVGGD 195 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l--~~~~~Dl-p~v~~~a~~~~~ri~~~~gD 195 (209)
.+||--||++| ++.+|+++|-++ ++++.-+ .+.++.+....+.+..+..|
T Consensus 6 nTiLITGG~sG-IGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~D 58 (245)
T COG3967 6 NTILITGGASG-IGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCD 58 (245)
T ss_pred cEEEEeCCcch-hhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeec
Confidence 46666677766 466777777666 4566655 44455444333333333444
No 318
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=47.16 E-value=66 Score=23.06 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcC--chhHhhhCCCCCCHHHHHH----HHhCCCCC-------CCCCceecCHhhh
Q 046346 13 LEAQIHVWNHIFNFINSMTLKCSIQLG--IPDIINKHGKPMTLNELQK----LVSSGNNN-------DEEQGYVLTNASK 79 (209)
Q Consensus 13 ~~~~~~l~~~~~g~~~~~~l~~a~~lg--lfd~L~~~g~~~t~~eLA~----L~~~g~~e-------~~~~~y~~t~~s~ 79 (209)
.-+....++++.+-|....|+...+ | =|..|...=+++|..-|++ |...|+++ +..-.|.+|+.|+
T Consensus 10 ~c~~~~~l~~ig~kW~~lIl~~L~~-g~~RF~eL~r~i~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~ 88 (120)
T COG1733 10 PCPVEEALEVIGGKWTLLILRDLFD-GPKRFNELRRSIGGISPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGR 88 (120)
T ss_pred CCCHHHHHHHHcCccHHHHHHHHhc-CCCcHHHHHHHccccCHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHH
Confidence 4567889999999999999988877 5 4888887523488888888 88899733 2234699999997
Q ss_pred hhh
Q 046346 80 LLL 82 (209)
Q Consensus 80 ~l~ 82 (209)
.|.
T Consensus 89 ~L~ 91 (120)
T COG1733 89 DLL 91 (120)
T ss_pred HHH
Confidence 654
No 319
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=47.02 E-value=32 Score=26.48 Aligned_cols=41 Identities=12% Similarity=-0.016 Sum_probs=31.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
....--+-||||.-..-.+.++|++++.+.--+.....++.
T Consensus 57 ~~~~GIliCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar~ 97 (171)
T TIGR01119 57 EADLGVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKE 97 (171)
T ss_pred CCCEEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 34456678999999999999999999755555666666663
No 320
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=46.77 E-value=90 Score=23.34 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=35.8
Q ss_pred CCCeEEEecCCccHHH--HHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCC-CCCCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAA--KAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AISPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~--~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~-~~p~~D~~~l 208 (209)
..++||-||||.=..- ..|++. +.++++++ |+..+...+ .+++++....|.+ .+..+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~-l~~i~~~~~~~~~~dl~~a~lVia 76 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKE-LPYITWKQKTFSNDDIKDAHLIYA 76 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHh-ccCcEEEecccChhcCCCceEEEE
Confidence 5688999999865443 345554 44565665 444333332 2466666655554 3445787763
No 321
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=46.24 E-value=32 Score=28.63 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=30.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHh
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVN 180 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~ 180 (209)
+.+.-.-+|+|..+|.+.-.|.++ +++++.+|-..+.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~ 246 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQ 246 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhh
Confidence 345567899999999999999999 78888899754443
No 322
>PRK06475 salicylate hydroxylase; Provisional
Probab=46.02 E-value=27 Score=30.14 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=28.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.+|+-||||.+-++.+++-+.++.+++++|.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 6789999999999999888888999999996
No 323
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=45.74 E-value=88 Score=26.91 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=46.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeech-HHH----hhcccC-CCCeEEEEccCCC---CCCC---CcEE
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDLP-HVV----NGLESD-LVNLKYVGGDMFK---AISP---ADAV 206 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~--l~~~~~Dlp-~v~----~~a~~~-~~ri~~~~gD~~~---~~p~---~D~~ 206 (209)
-.+..+|||...++|.=+..+++..++ ..++.+|.. .-+ ++.+.. ...+..+..|... ..+. +|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 345699999999999999999999987 455889983 233 333333 3346677777542 2332 8888
Q ss_pred Ee
Q 046346 207 VL 208 (209)
Q Consensus 207 ~l 208 (209)
++
T Consensus 234 Ll 235 (355)
T COG0144 234 LL 235 (355)
T ss_pred EE
Confidence 75
No 324
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.71 E-value=46 Score=27.18 Aligned_cols=58 Identities=19% Similarity=0.454 Sum_probs=40.3
Q ss_pred HhccccccCCCeEEEecCCccHHHHHHHHHC----CCC-----eEEEeechHHHhhcccCCCCeEEEEccCCC
Q 046346 135 QKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF----PKL-----ECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198 (209)
Q Consensus 135 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~----P~l-----~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~ 198 (209)
+.|. .|.+..++||+...+|.++.-|.++. |.. +.|.+|+..|.. .+.|.-+.+|+.+
T Consensus 34 eef~-i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----I~GV~qlq~DIT~ 100 (294)
T KOG1099|consen 34 EEFQ-IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----IEGVIQLQGDITS 100 (294)
T ss_pred hhhh-HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----cCceEEeecccCC
Confidence 3443 46789999999999999999887774 211 278899866643 3455556666654
No 325
>PRK07454 short chain dehydrogenase; Provisional
Probab=45.56 E-value=95 Score=24.22 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=33.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHC--CCCeEEEeech-HHHhhc----ccCCCCeEEEEccCCC
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAF--PKLECTCFDLP-HVVNGL----ESDLVNLKYVGGDMFK 198 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dlp-~v~~~a----~~~~~ri~~~~gD~~~ 198 (209)
..++++-.| |+|.++..+++++ .+.++++++++ +..+.. ++...++.++.+|+.+
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 66 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSN 66 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC
Confidence 345666666 4666666666654 24578888883 222211 1134678889999875
No 326
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=45.18 E-value=45 Score=28.64 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=32.8
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhhcc
Q 046346 141 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLE 183 (209)
Q Consensus 141 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~ 183 (209)
.....+|+.+|+|. |..+..++++...-++++.|. ++..+.++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~ 226 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMAR 226 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 44567899999998 999999999987545777776 55555554
No 327
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=45.09 E-value=39 Score=22.17 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=20.9
Q ss_pred CCCCHHHHHH---------------HHhCCCCC--C-CCCceecCHh
Q 046346 49 KPMTLNELQK---------------LVSSGNNN--D-EEQGYVLTNA 77 (209)
Q Consensus 49 ~~~t~~eLA~---------------L~~~g~~e--~-~~~~y~~t~~ 77 (209)
++.|.++||+ |...|+++ + .+|.|.++..
T Consensus 24 ~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~ 70 (83)
T PF02082_consen 24 KPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLARP 70 (83)
T ss_dssp C-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeecCC
Confidence 5699999999 77889854 2 3578888764
No 328
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=45.04 E-value=3.2 Score=26.32 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=21.4
Q ss_pred HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCC
Q 046346 37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNN 66 (209)
Q Consensus 37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e 66 (209)
+..++..|-.. ++.|+++||+ |...|+++
T Consensus 10 E~~vy~~Ll~~-~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~ 53 (68)
T PF01978_consen 10 EAKVYLALLKN-GPATAEEIAEELGISRSTVYRALKSLEEKGLVE 53 (68)
T ss_dssp HHHHHHHHHHH-CHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 44556666544 7999999999 78889855
No 329
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=45.01 E-value=1.3e+02 Score=22.93 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=41.8
Q ss_pred cCCCcHHHHHHHHHHHhhhH-----hhHHHHHHhccccccCCCeEEE--ecCCccHHHHH-HHHHCCCCeEEEeec
Q 046346 108 DGDEPKLNNFFNEAMASDAR-----LATSVMIQKCKNVFEGLNSLVD--VGGGTGTAAKA-IAKAFPKLECTCFDL 175 (209)
Q Consensus 108 ~~~~~~~~~~f~~~m~~~~~-----~~~~~~~~~~~~~~~~~~~vlD--vGgG~G~~~~~-l~~~~P~l~~~~~Dl 175 (209)
.++++.+.+...++|....- ......+.... ...+.--||| +|+|+|...++ |.++.|+.+.+++--
T Consensus 15 vdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-t~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTG 89 (182)
T COG4567 15 VDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-TAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTG 89 (182)
T ss_pred ecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-cCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEec
Confidence 45666677788888874211 11222233222 1334556677 58999988775 778899999887764
No 330
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=44.69 E-value=26 Score=21.33 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCchhHhhhCCCCCCHHHHHH
Q 046346 28 NSMTLKCSIQLGIPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 28 ~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~ 58 (209)
.-.+|.+|.++|-||.= ...|.+|||+
T Consensus 5 Q~e~L~~A~~~GYfd~P----R~~tl~elA~ 31 (53)
T PF04967_consen 5 QREILKAAYELGYFDVP----RRITLEELAE 31 (53)
T ss_pred HHHHHHHHHHcCCCCCC----CcCCHHHHHH
Confidence 45689999999999964 3699999998
No 331
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=44.68 E-value=38 Score=28.91 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=35.4
Q ss_pred CeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346 145 NSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES 184 (209)
Q Consensus 145 ~~vlDvGgG~-G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~ 184 (209)
.+++-+|+|+ |.++..+++.+...++++.|+ +.-++.|++
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 3999999997 888899999999999999999 788888875
No 332
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=44.52 E-value=44 Score=25.36 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=21.9
Q ss_pred CCCCHHHHHH---------------HHhCCCCC---CCCCceecCHh
Q 046346 49 KPMTLNELQK---------------LVSSGNNN---DEEQGYVLTNA 77 (209)
Q Consensus 49 ~~~t~~eLA~---------------L~~~g~~e---~~~~~y~~t~~ 77 (209)
+++|+++||+ |...|+++ ..+|.|.+..-
T Consensus 24 ~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~ 70 (164)
T PRK10857 24 GPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKD 70 (164)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCC
Confidence 6899999999 77889844 34567877653
No 333
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=44.49 E-value=1.3e+02 Score=27.73 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=42.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCC----CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCC--CCcEEE
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFP----KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PADAVV 207 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P----~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p--~~D~~~ 207 (209)
...|.-+|+|.|-+..+.++.-- .++.++++- |.++-.-+. -.+||+.+..|+.+ .-| ++|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH
Confidence 56788999999999887666533 345555555 544432221 26899999999977 333 288763
No 334
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=44.42 E-value=57 Score=26.33 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=31.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCC--eEEEeec-hHHHhhcc
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKL--ECTCFDL-PHVVNGLE 183 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l--~~~~~Dl-p~v~~~a~ 183 (209)
.++-++.|=.||+|.++.-+.--|+.. +++.-|+ +++++.|+
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~ 94 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELAR 94 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHH
Confidence 467899999999999999888777664 4678888 67777665
No 335
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=44.30 E-value=33 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=25.4
Q ss_pred CeEEEecCCccHHHH--HHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAK--AIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~--~l~~~~P~l~~~~~Dl 175 (209)
.+||-||||.|-+.. .|++..|+.+++++|.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~ 34 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEK 34 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEEC
Confidence 479999999987664 4667788999999986
No 336
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=44.18 E-value=36 Score=26.19 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=31.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
+....--+-||||.-..-.+.++|++++.+.--+.....++.
T Consensus 56 g~~d~GIliCGTGiG~siaANKv~GIRAA~~~d~~sA~~aR~ 97 (171)
T PRK08622 56 GEADLGVCICGTGVGISNAVNKVPGIRSALVRDMTSALYAKE 97 (171)
T ss_pred CCCcEEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 344556678999999999999999999755554666666663
No 337
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=44.10 E-value=32 Score=25.15 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=24.5
Q ss_pred CCCCHHHHHH---------------HHhCCCCC-CCCCceecCHhhhhhh
Q 046346 49 KPMTLNELQK---------------LVSSGNNN-DEEQGYVLTNASKLLL 82 (209)
Q Consensus 49 ~~~t~~eLA~---------------L~~~g~~e-~~~~~y~~t~~s~~l~ 82 (209)
++.++++||. |...|+++ ...+.|.+|+.|+.+.
T Consensus 21 ~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~~~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEecCceEEECHHHHHHH
Confidence 5667777776 77889865 3457799999996543
No 338
>PRK06847 hypothetical protein; Provisional
Probab=44.01 E-value=34 Score=28.97 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=27.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
...|+-||||.+-++.++.-+.-+++++++|.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 46899999999998888777667889999986
No 339
>PRK08163 salicylate hydroxylase; Provisional
Probab=43.84 E-value=34 Score=29.27 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
...|+-||||.+-.+.+++-+..+.+++++|.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQ 35 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEee
Confidence 46799999999999999888888999999997
No 340
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=43.62 E-value=11 Score=21.88 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=16.0
Q ss_pred HcCchhHhhhCCCCCCHHHHHH
Q 046346 37 QLGIPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 37 ~lglfd~L~~~g~~~t~~eLA~ 58 (209)
++.|...|.+ +|.++.||++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~ 23 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAE 23 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHH
T ss_pred HHHHHHHHHh--CCCchhhHHH
Confidence 4566777876 7999999998
No 341
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=43.26 E-value=31 Score=30.65 Aligned_cols=31 Identities=42% Similarity=0.563 Sum_probs=22.0
Q ss_pred eEEEecCCccHHHH--HHHHHCCC-CeEEEeech
Q 046346 146 SLVDVGGGTGTAAK--AIAKAFPK-LECTCFDLP 176 (209)
Q Consensus 146 ~vlDvGgG~G~~~~--~l~~~~P~-l~~~~~Dlp 176 (209)
.|+-||||+.-... .|++.+|. +++++++.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 47889999876655 47788888 899999974
No 342
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=43.02 E-value=56 Score=24.56 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=31.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
...--+-||||.-..-.+.++|++|+.+.--+.....++.
T Consensus 62 ~~~GIliCGtGiG~siaANK~~GIRAa~~~d~~~A~~ar~ 101 (151)
T PTZ00215 62 ADTGILVCGSGIGISIAANKVKGIRCALCHDHYTARMSRQ 101 (151)
T ss_pred CcEEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 4446678999999999999999999865555666666663
No 343
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=42.41 E-value=23 Score=27.67 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=30.8
Q ss_pred cCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC-----CCCc----eecCHhhhhhhc
Q 046346 38 LGIPDIINKHGKPMTLNELQK---------------LVSSGNNND-----EEQG----YVLTNASKLLLK 83 (209)
Q Consensus 38 lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~-----~~~~----y~~t~~s~~l~~ 83 (209)
..|+..|... +++|..+||+ |...|+++. ..|+ |.+|+.+..+..
T Consensus 4 ~~IL~~L~~~-~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 4 EDILSYLLKQ-GQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 3466677665 6899999998 677887432 1333 789998865443
No 344
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=42.17 E-value=44 Score=29.01 Aligned_cols=38 Identities=29% Similarity=0.566 Sum_probs=27.9
Q ss_pred HHHHHhccccccCCCeEEEecCCcc-----HHHHHHHHHCCCCe
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTG-----TAAKAIAKAFPKLE 169 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G-----~~~~~l~~~~P~l~ 169 (209)
+..++.++ .+.+...+-.+|||+| .++..|.+.||...
T Consensus 90 r~~~E~cd-~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~ 132 (379)
T cd02190 90 RKAAEKCD-SLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVY 132 (379)
T ss_pred HHHHhhCc-CcceEEEEeecCCCcchhHHHHHHHHHHHhcCccc
Confidence 34456666 3667889999999998 55667888899763
No 345
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=41.92 E-value=69 Score=24.64 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=29.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcc
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE 183 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~ 183 (209)
.....|||-=||+|+.+.+..+. +-+++++|+ |+-++.|.
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 35689999999999999998887 455999999 56566554
No 346
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=41.83 E-value=1.3e+02 Score=25.14 Aligned_cols=36 Identities=36% Similarity=0.487 Sum_probs=29.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHH
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHV 178 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v 178 (209)
+..+|+=+|||.-.+...+.++||+.+.++.|-|..
T Consensus 273 ~~~~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~~ 308 (320)
T TIGR03739 273 SIQNIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPMF 308 (320)
T ss_pred cccEEEEeCCcHHHHHHHHHHHCCCCeeEecCCcHH
Confidence 467899999999999899999999988766665543
No 347
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=41.59 E-value=57 Score=20.63 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.5
Q ss_pred chhHhhhCCCCCCHHHHHH
Q 046346 40 IPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 40 lfd~L~~~g~~~t~~eLA~ 58 (209)
|++.|.+.++|++..+|++
T Consensus 3 IL~~L~~~~~P~g~~~l~~ 21 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAE 21 (66)
T ss_pred HHHHHHHcCCCCCHHHHHH
Confidence 4667777778999999998
No 348
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=41.11 E-value=14 Score=29.53 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=18.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHC
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAF 165 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~ 165 (209)
.+.++||+|.|.|.++..++-.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f 134 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF 134 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH
Confidence 36899999999999887765443
No 349
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=41.11 E-value=72 Score=26.50 Aligned_cols=64 Identities=20% Similarity=0.125 Sum_probs=33.5
Q ss_pred CCeEEEecCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCCCCcEEEe
Q 046346 144 LNSLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~--G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p~~D~~~l 208 (209)
..+|.=||+|. +.++..+.+.....+++++|+ ++..+.+++...... ...+.-+....+|++++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~~~~~aDvVii 72 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDR-VTTSAAEAVKGADLVIL 72 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCce-ecCCHHHHhcCCCEEEE
Confidence 35788888775 334444554443347889998 455555543221111 11222112344888876
No 350
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.93 E-value=4.8 Score=30.87 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=36.9
Q ss_pred CCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------CCCCeEEEEccCCC
Q 046346 144 LNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK 198 (209)
Q Consensus 144 ~~~vlDvGgG-~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------~~~ri~~~~gD~~~ 198 (209)
..+|+++||| +|..+.-++.+-|...+.+-|- ...+...++ ...+++.+..+...
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence 4789999999 5666667788888888888886 344443332 23556666655554
No 351
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=40.80 E-value=10 Score=26.11 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEecCCccHHHHHHHHHC-CCCeE----EEeec
Q 046346 147 LVDVGGGTGTAAKAIAKAF-PKLEC----TCFDL 175 (209)
Q Consensus 147 vlDvGgG~G~~~~~l~~~~-P~l~~----~~~Dl 175 (209)
=+|||||.|....+--+.+ ++.+. +..|+
T Consensus 6 NIDIGcG~GNTmda~fRsct~htSyYy~S~~~Dl 39 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSCTLHTSYYYLSTNHDL 39 (124)
T ss_pred ccccccCCCcchhhhhhccccccceEEEeecccc
Confidence 3799999998776655444 44443 45555
No 352
>PRK09126 hypothetical protein; Provisional
Probab=40.42 E-value=36 Score=29.08 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=26.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||.+-.+.++.-+-.+++++++|.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 3588999999999998777777899999997
No 353
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=40.20 E-value=37 Score=24.75 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=18.2
Q ss_pred EecCCcc--HHHHHHH--HHCCCCeEEEeec-hHH
Q 046346 149 DVGGGTG--TAAKAIA--KAFPKLECTCFDL-PHV 178 (209)
Q Consensus 149 DvGgG~G--~~~~~l~--~~~P~l~~~~~Dl-p~v 178 (209)
|||++.| ....... ...|..+++.++- |..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~ 35 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSN 35 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHH
Confidence 8999999 5555554 5678889988996 443
No 354
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=39.58 E-value=13 Score=24.63 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=25.8
Q ss_pred HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCC----CCCC----ceecCHhhh
Q 046346 37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNN----DEEQ----GYVLTNASK 79 (209)
Q Consensus 37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e----~~~~----~y~~t~~s~ 79 (209)
+++|...|... +.++..+|.+ |...|+++ ..++ .|.+|+.|+
T Consensus 2 Rl~Il~~L~~~-~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 2 RLAILALLYAN-EEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred HHHHHHHHhhc-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 45566666654 4677777776 67788732 1122 389999986
No 355
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=39.57 E-value=22 Score=22.08 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCCCCCceecCHhhh
Q 046346 54 NELQKLVSSGNNNDEEQGYVLTNASK 79 (209)
Q Consensus 54 ~eLA~L~~~g~~e~~~~~y~~t~~s~ 79 (209)
+.|+.+...|+++.+++++++|+.|.
T Consensus 40 ~~l~~l~~~Gll~~~~~~l~lT~~G~ 65 (66)
T PF06969_consen 40 KELEELQEDGLLEIDGGRLRLTEKGR 65 (66)
T ss_dssp HHHHHHHHTTSEEE-SSEEEE-TTTG
T ss_pred HHHHHHHHCCCEEEeCCEEEECcccC
Confidence 44666899999888899999999875
No 356
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=39.32 E-value=39 Score=29.91 Aligned_cols=30 Identities=33% Similarity=0.353 Sum_probs=26.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
+|+-||||+|-++.++.-...+.+++++|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~ 31 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDE 31 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 688999999999988887778899999986
No 357
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=39.19 E-value=1.1e+02 Score=23.97 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=34.8
Q ss_pred CCCeEEEecCCccHHH--HHHHHHCCCCeEEEeec---hHHHhhcccCCCCeEEEEccCCC-CCCCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAA--KAIAKAFPKLECTCFDL---PHVVNGLESDLVNLKYVGGDMFK-AISPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~--~~l~~~~P~l~~~~~Dl---p~v~~~a~~~~~ri~~~~gD~~~-~~p~~D~~~l 208 (209)
..+++|-||||.=... ..|.+.. .++++++. ++..+.+. ..++.+....+.. .+..+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~--~~~i~~~~~~~~~~~l~~adlVia 76 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVE--EGKIRWKQKEFEPSDIVDAFLVIA 76 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHh--CCCEEEEecCCChhhcCCceEEEE
Confidence 4578999999754332 2455544 45666653 22222222 3567777665554 3556887763
No 358
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=38.81 E-value=35 Score=28.11 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=23.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.|+-||||.+-.+.+++-+.-+.+++++|.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEES
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchh
Confidence 588999999888888777777788999997
No 359
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=38.78 E-value=1e+02 Score=23.58 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHcC-------chhHhhhCCCCCCHHHHHH----------------HHhCCCCCC-C---CCceec
Q 046346 22 HIFNFINSMTLKCSIQLG-------IPDIINKHGKPMTLNELQK----------------LVSSGNNND-E---EQGYVL 74 (209)
Q Consensus 22 ~~~g~~~~~~l~~a~~lg-------lfd~L~~~g~~~t~~eLA~----------------L~~~g~~e~-~---~~~y~~ 74 (209)
.+++.|.-.|+.++.+.+ |.-++...+.|+++.+|+. |...|+++. . .-+|..
T Consensus 63 ~Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~eDth~itYslrKL~k~gLit~t~~gkevTy~v 142 (199)
T COG5631 63 EAFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNREDTHNITYSLRKLLKGGLITRTGSGKEVTYEV 142 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHhccceecCCCCceEEEEE
Confidence 356677778888877766 3445555578999999998 456676542 1 236888
Q ss_pred CHhhh
Q 046346 75 TNASK 79 (209)
Q Consensus 75 t~~s~ 79 (209)
|+.|.
T Consensus 143 Ta~G~ 147 (199)
T COG5631 143 TALGH 147 (199)
T ss_pred ecchH
Confidence 88874
No 360
>PRK07236 hypothetical protein; Provisional
Probab=38.73 E-value=46 Score=28.51 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=27.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
...|+-||||.+-++.+++-+..+.+++++|.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 46899999999998888777777899999997
No 361
>PRK07045 putative monooxygenase; Reviewed
Probab=38.18 E-value=42 Score=28.72 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=28.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
...|+-||||.+-.+.+++-+..+.+++++|.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVER 36 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 45799999999999999888888999999996
No 362
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=38.17 E-value=57 Score=24.23 Aligned_cols=37 Identities=8% Similarity=-0.102 Sum_probs=28.2
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 148 VDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 148 lDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
=-+=||||.-..-.+.++|++|+.+.--+.....++.
T Consensus 59 GIliCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 95 (141)
T TIGR01118 59 GIVIDAYGAGSFMVATKIKGMIAAEVSDERSAYMTRG 95 (141)
T ss_pred EEEEcCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHH
Confidence 3344899999999999999999866555666666663
No 363
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=37.93 E-value=29 Score=31.40 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=19.5
Q ss_pred HHHHHhccccccCCCeEEEecCCccHHHHH
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKA 160 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~ 160 (209)
-.+...++ +.+...++|||||+=.++..
T Consensus 119 lGv~~~~~--~~~~~lv~DIGGGStEl~~g 146 (492)
T COG0248 119 LGVASTLP--RKGDGLVIDIGGGSTELVLG 146 (492)
T ss_pred HHHHhcCC--CCCCEEEEEecCCeEEEEEe
Confidence 34455666 35678999999998665543
No 364
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=37.76 E-value=43 Score=24.32 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=29.3
Q ss_pred chhHhhhCCCCCCHHHHHH---------------HHhCCCCCCC----CC---ceecCHhhhhhhc
Q 046346 40 IPDIINKHGKPMTLNELQK---------------LVSSGNNNDE----EQ---GYVLTNASKLLLK 83 (209)
Q Consensus 40 lfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~----~~---~y~~t~~s~~l~~ 83 (209)
++..|...+++.|..+||+ |...|++++. +. .+.+|+.|+.+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 4566654334688999999 6788874421 22 4789999976654
No 365
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=37.65 E-value=38 Score=24.69 Aligned_cols=46 Identities=24% Similarity=0.188 Sum_probs=31.2
Q ss_pred HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC----CCC---ceecCHhhhhhhc
Q 046346 37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNND----EEQ---GYVLTNASKLLLK 83 (209)
Q Consensus 37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~----~~~---~y~~t~~s~~l~~ 83 (209)
++.|+-.|... +++|..+||+ |...|++++ .+. .+.+|+.|+.+..
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~ 109 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICE 109 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHH
Confidence 34456777654 6899999999 677887432 222 3688998876553
No 366
>PRK06753 hypothetical protein; Provisional
Probab=37.31 E-value=46 Score=28.20 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=25.9
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
+|+-||||.+-.+.++.-+..+.+++++|.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 588999999999888777777889999996
No 367
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=37.20 E-value=1.3e+02 Score=22.45 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=38.4
Q ss_pred CeEEEecCCccHHHH------HHHHHCCCCeEEEeec---hHHHhhcccCCCCeEEEEccCCCCCC
Q 046346 145 NSLVDVGGGTGTAAK------AIAKAFPKLECTCFDL---PHVVNGLESDLVNLKYVGGDMFKAIS 201 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~------~l~~~~P~l~~~~~Dl---p~v~~~a~~~~~ri~~~~gD~~~~~p 201 (209)
..++-=+...+++.. .+.+.+|+-+.+++|| +.-++..++...++++..-|+. +.|
T Consensus 61 ~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~s-~YP 125 (142)
T PF07801_consen 61 DVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFNFS-KYP 125 (142)
T ss_pred ccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECCCc-cCc
Confidence 344445566666544 4677899999999998 5556665544578999888884 444
No 368
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=37.16 E-value=28 Score=24.95 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH
Q 046346 27 INSMTLKCSIQLGIPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 27 ~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~ 58 (209)
..+.+|.--.++.|+..|... ++.++.||++
T Consensus 8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~ 38 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES-GELCVCDLCT 38 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHH
Confidence 455666667788888888753 6899999988
No 369
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=37.09 E-value=1.6e+02 Score=25.11 Aligned_cols=36 Identities=11% Similarity=0.303 Sum_probs=28.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHH
Q 046346 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHV 178 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v 178 (209)
..+..+|+=+|||+-.+-..|.+.||+. .+.|-|..
T Consensus 289 ~~~~d~IiL~GGGA~ll~~~lk~~f~~~--~~~~~p~~ 324 (344)
T PRK13917 289 INSFDRVIVTGGGANIFFDSLSHWYSDV--EKADESQF 324 (344)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHHcCCe--EEcCChHH
Confidence 3466889999999999988999999975 55665543
No 370
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=37.04 E-value=64 Score=27.18 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=26.8
Q ss_pred HHHHHhccccccCCCeEEEecCCcc-----HHHHHHHHHCCCC
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTG-----TAAKAIAKAFPKL 168 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G-----~~~~~l~~~~P~l 168 (209)
...++.+|. +.+...+.++|||+| .++..+.+.||+.
T Consensus 80 r~~~E~cD~-~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 80 RKEAEECDS-LQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred HHHHHhCCC-ccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 344566662 567789999999888 3566788889853
No 371
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=36.94 E-value=47 Score=24.96 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=19.2
Q ss_pred HHhCCCCCC-CCCceecCHhhhhhhc
Q 046346 59 LVSSGNNND-EEQGYVLTNASKLLLK 83 (209)
Q Consensus 59 L~~~g~~e~-~~~~y~~t~~s~~l~~ 83 (209)
|...|+++. ..+.+.+|+.|.....
T Consensus 48 L~~~GlV~~~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 48 LERLGLVEYEPYGGVTLTEKGREKAK 73 (154)
T ss_pred HHHCCCeEEecCCCeEEChhhHHHHH
Confidence 889999664 6678999999865443
No 372
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=36.84 E-value=91 Score=20.69 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=17.5
Q ss_pred HHhCCCCCC---CCCceecCHhhh-hhh
Q 046346 59 LVSSGNNND---EEQGYVLTNASK-LLL 82 (209)
Q Consensus 59 L~~~g~~e~---~~~~y~~t~~s~-~l~ 82 (209)
|-.+|+++. ..+.|..|..+- ++.
T Consensus 47 Le~lGlve~~p~~s~GriPT~~aYr~~~ 74 (78)
T PF03444_consen 47 LEELGLVESQPHPSGGRIPTDKAYRALN 74 (78)
T ss_pred HHHCCCccCCCCCCCCCCcCHHHHHHHc
Confidence 889999763 357888999873 443
No 373
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=36.67 E-value=48 Score=31.19 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
....+|+-||||.+-++.+++-+..+++++++|.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 3468899999999999999888888999999997
No 374
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=36.62 E-value=58 Score=26.03 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=27.2
Q ss_pred CCccHHHHH----HHHHCCCCeEEEeechH----HHhhc----cc------C----CCCeEEEEccCCCC
Q 046346 152 GGTGTAAKA----IAKAFPKLECTCFDLPH----VVNGL----ES------D----LVNLKYVGGDMFKA 199 (209)
Q Consensus 152 gG~G~~~~~----l~~~~P~l~~~~~Dlp~----v~~~a----~~------~----~~ri~~~~gD~~~~ 199 (209)
|+||.++.. |++..+..+++++-++. ..+.. .+ . .+||+++.||+.++
T Consensus 3 GaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~ 72 (249)
T PF07993_consen 3 GATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQP 72 (249)
T ss_dssp -TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSG
T ss_pred CCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEecccccc
Confidence 788888775 45555656887777742 22222 11 1 68999999999874
No 375
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=36.46 E-value=34 Score=27.64 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=33.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHH
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVV 179 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~ 179 (209)
+..+.+|.-=|.|..+..|++++|+++..++|+.++.
T Consensus 43 ~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A 79 (303)
T KOG2782|consen 43 RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVA 79 (303)
T ss_pred CCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHH
Confidence 4689999999999999999999999999999995544
No 376
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=36.20 E-value=94 Score=26.19 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=37.1
Q ss_pred CeEEEecCCccHHHHHHHHHC--CCCeEEEeech-----HHHhhccc-----CCCCeEEEEccCCCC------CCCCcEE
Q 046346 145 NSLVDVGGGTGTAAKAIAKAF--PKLECTCFDLP-----HVVNGLES-----DLVNLKYVGGDMFKA------ISPADAV 206 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dlp-----~v~~~a~~-----~~~ri~~~~gD~~~~------~p~~D~~ 206 (209)
.+|+ |=||+|.++..|+++. .+.+++++|+. ........ ...+++++.+|+.+. +..+|+|
T Consensus 16 ~~vl-VtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~V 94 (348)
T PRK15181 16 KRWL-ITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDYV 94 (348)
T ss_pred CEEE-EECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCEE
Confidence 4555 4567888887777665 34578888862 11211110 125789999999862 2336765
Q ss_pred E
Q 046346 207 V 207 (209)
Q Consensus 207 ~ 207 (209)
+
T Consensus 95 i 95 (348)
T PRK15181 95 L 95 (348)
T ss_pred E
Confidence 4
No 377
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=35.90 E-value=78 Score=24.18 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHcCchh----HhhhC-CCCCCHHHHHH----HHhCCCCCC-CCCceecCHhhh
Q 046346 24 FNFINSMTLKCSIQLGIPD----IINKH-GKPMTLNELQK----LVSSGNNND-EEQGYVLTNASK 79 (209)
Q Consensus 24 ~g~~~~~~l~~a~~lglfd----~L~~~-g~~~t~~eLA~----L~~~g~~e~-~~~~y~~t~~s~ 79 (209)
+..|...+++..+.+.=|+ .|.+. -.++|.+++.+ |..+|++++ ++|.|..|..+-
T Consensus 21 ~~~W~~~~ir~l~~l~~~~~d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~~g~y~~t~~~l 86 (171)
T PF14394_consen 21 YSSWYHPAIRELLPLMPFAPDPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDGDGKYVQTDKSL 86 (171)
T ss_pred HhhhHHHHHHHHhhcCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECCCCcEEEeccee
Confidence 4567778888888877554 23221 14788888877 889999764 446999988553
No 378
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=35.79 E-value=45 Score=20.80 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=22.2
Q ss_pred HHcCchhHhhhCCCCCCHHHHHH----HHhCCCCCCCCCceec
Q 046346 36 IQLGIPDIINKHGKPMTLNELQK----LVSSGNNNDEEQGYVL 74 (209)
Q Consensus 36 ~~lglfd~L~~~g~~~t~~eLA~----L~~~g~~e~~~~~y~~ 74 (209)
.=++.| .....+.+.|.+||.+ ++..|.++..+|.|++
T Consensus 19 ~mLkmf-~~~~~~~~~s~~eL~~fL~~lv~e~~L~~~~G~YkL 60 (60)
T PF08672_consen 19 SMLKMF-PKDPGGYDISLEELQEFLDRLVEEGKLECSGGSYKL 60 (60)
T ss_dssp HHHHHH--GGG--TT--HHHHHHHHHHHHHTTSEE--TTEEEE
T ss_pred HHHHhc-cCCCCCCCCCHHHHHHHHHHHHHCCcEEecCCEEeC
Confidence 334455 2222246899999988 7889987777899975
No 379
>PRK07588 hypothetical protein; Provisional
Probab=35.68 E-value=46 Score=28.52 Aligned_cols=30 Identities=17% Similarity=-0.024 Sum_probs=25.6
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.|+-||||.+-.+.++.-+..+.+++++|.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~ 31 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIER 31 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeC
Confidence 588999999998888777777888999986
No 380
>PRK05868 hypothetical protein; Validated
Probab=35.62 E-value=50 Score=28.26 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=25.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||.+-.+.++.-+..+.+++++|.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 4688999999998888766666788888886
No 381
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=35.59 E-value=60 Score=27.93 Aligned_cols=33 Identities=21% Similarity=0.085 Sum_probs=28.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
....|+-||||.+-.+.++.-+.-+.+++++|.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 49 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEA 49 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEec
Confidence 356799999999999998777777889999997
No 382
>PRK07538 hypothetical protein; Provisional
Probab=35.39 E-value=48 Score=28.71 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=25.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.|+-||||.+-.+.+++-+.-+++++++|.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 588999999999988776667889999997
No 383
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=35.33 E-value=13 Score=33.18 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346 110 DEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 184 (209)
Q Consensus 110 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~ 184 (209)
+.++....|++.|.+.-.......... ......++-||-|.|.+...+....|....+.+.+ |++++.|+.
T Consensus 266 r~~~l~s~~h~~m~~g~aL~~n~~~~~----~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q 337 (482)
T KOG2352|consen 266 RKPELASQYHQMMIGGLALIMNRPPQK----LDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQ 337 (482)
T ss_pred cCcccCcchhhhhhccceeccccCchh----ccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHh
Confidence 445556667777765443322221122 33456677778888999999999999998888887 999998875
No 384
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=35.27 E-value=42 Score=24.99 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=26.7
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 150 VGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 150 vGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
+=||||.-..-.+.++|++|+.+.--+.....++.
T Consensus 61 liCGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 95 (142)
T PRK08621 61 VIDAYGAGSFMVATKIKGMVAAEVSDERSAYMTRG 95 (142)
T ss_pred EEcCCChhhhhhhhcCCCeEEEEECCHHHHHHHHH
Confidence 34899999999999999999755554666666663
No 385
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=35.16 E-value=68 Score=23.82 Aligned_cols=37 Identities=5% Similarity=-0.098 Sum_probs=27.5
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 148 VDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 148 lDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
=-+=||||.-..-.+.++|++|+.+.--+.....++.
T Consensus 58 GIliCGtGiG~siaANKv~GIRaA~~~d~~~A~~ar~ 94 (141)
T PRK12613 58 GIMVDAYGAGPFMVATKLKGMVAAEVSDERSAYMTRG 94 (141)
T ss_pred EEEEcCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHH
Confidence 3344899998999999999999755554666666653
No 386
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=35.00 E-value=50 Score=28.18 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=27.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||.+-.+.+++-+..+.+++++|.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~ 32 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFES 32 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecC
Confidence 3588999999999999888878899999996
No 387
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=34.88 E-value=66 Score=26.48 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=33.3
Q ss_pred cCCccHHHHHHHHH----CCCCeEEEeechHHHhhccc--CCCCeEEEEccCCCC------CCCCcEEE
Q 046346 151 GGGTGTAAKAIAKA----FPKLECTCFDLPHVVNGLES--DLVNLKYVGGDMFKA------ISPADAVV 207 (209)
Q Consensus 151 GgG~G~~~~~l~~~----~P~l~~~~~Dlp~v~~~a~~--~~~ri~~~~gD~~~~------~p~~D~~~ 207 (209)
=||+|.++..|.++ .+..++.++|+..--..... ..+..+++.+|+.++ +.++|+++
T Consensus 3 TGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~ 71 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVF 71 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEE
Confidence 37888888765554 34456788887332221111 233445899999872 23367664
No 388
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=34.84 E-value=47 Score=24.23 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=30.3
Q ss_pred cCCCeEEEecCCccHH-HHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCCC----CCcEEE
Q 046346 142 EGLNSLVDVGGGTGTA-AKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAIS----PADAVV 207 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~-~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~p----~~D~~~ 207 (209)
.+..++++||-|.=.- +..|.++. ..+++.|..+. . ....+.++.=|.|+|-. .+|+++
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~--~---a~~g~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR--K---APEGVNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEE
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc--c---cccCcceeeecccCCCHHHhcCCcEEE
Confidence 3456999999886554 44555553 78899998443 2 22678888999998633 267664
No 389
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=34.72 E-value=74 Score=27.21 Aligned_cols=27 Identities=22% Similarity=0.076 Sum_probs=24.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeE
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLEC 170 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~ 170 (209)
..++|-=|||.|.++..|+...+..++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qG 177 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQG 177 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccc
Confidence 578999999999999999999998766
No 390
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=34.66 E-value=54 Score=26.33 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=25.8
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDLP 176 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp 176 (209)
.|+-||||.+-.+.++.-+..+.+++++|..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKK 32 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4788999999888887777678899999973
No 391
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=34.64 E-value=52 Score=27.98 Aligned_cols=31 Identities=32% Similarity=0.282 Sum_probs=27.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||.+-.+.++.-...+.+++++|.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAP 36 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 4689999999999998888878899999997
No 392
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=34.42 E-value=45 Score=27.50 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=20.5
Q ss_pred ccCCCeEEEecC-------------------------CccHHHHHHHHH
Q 046346 141 FEGLNSLVDVGG-------------------------GTGTAAKAIAKA 164 (209)
Q Consensus 141 ~~~~~~vlDvGg-------------------------G~G~~~~~l~~~ 164 (209)
++...+|+|||| |||.++..++++
T Consensus 95 ~p~~~tIiDIGGQD~K~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~ 143 (262)
T TIGR02261 95 NPEARAVLDIGALHGRAIRMDERGKVEAYKMTSQCASGSGQFLENIARY 143 (262)
T ss_pred CCCCCEEEEeCCCceEEEEEcCCCcEeeEEecCcccccccHHHHHHHHH
Confidence 567889999999 999999887776
No 393
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=34.42 E-value=60 Score=26.98 Aligned_cols=63 Identities=21% Similarity=0.064 Sum_probs=36.3
Q ss_pred eEEEecCC--ccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccC-CCCCCCCcEEEeC
Q 046346 146 SLVDVGGG--TGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDM-FKAISPADAVVLK 209 (209)
Q Consensus 146 ~vlDvGgG--~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~-~~~~p~~D~~~l~ 209 (209)
+|+-||.| -|.++..+.++.+..++++.|. ....+.+.++.---+ ..-|. ......+|+++++
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~-~~~~~~~~~~~~aD~Viva 71 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDE-LTVAGLAEAAAEADLVIVA 71 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccc-cccchhhhhcccCCEEEEe
Confidence 44455544 5777888888888888899998 445555543211111 11222 3344557887763
No 394
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=34.25 E-value=1.2e+02 Score=30.30 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=43.1
Q ss_pred CCCeEEEecCCc-cHHHHHHHHHCCCCe-------------EEEeec-hHHHhhcccCCCCeEEEEccCCC--CC----C
Q 046346 143 GLNSLVDVGGGT-GTAAKAIAKAFPKLE-------------CTCFDL-PHVVNGLESDLVNLKYVGGDMFK--AI----S 201 (209)
Q Consensus 143 ~~~~vlDvGgG~-G~~~~~l~~~~P~l~-------------~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~--~~----p 201 (209)
..++|+-||+|. |......+.+.|+.+ +++.|. ++-.+.+.+...+++.+..|+.+ ++ .
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 367999999984 777777777778866 788887 33333222223467778888765 11 3
Q ss_pred CCcEEEe
Q 046346 202 PADAVVL 208 (209)
Q Consensus 202 ~~D~~~l 208 (209)
++|+++.
T Consensus 648 ~~DaVIs 654 (1042)
T PLN02819 648 QVDVVIS 654 (1042)
T ss_pred CCCEEEE
Confidence 4788763
No 395
>PRK06101 short chain dehydrogenase; Provisional
Probab=34.12 E-value=80 Score=24.80 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=26.9
Q ss_pred ecCCccHHHHHHHHHCC--CCeEEEeech-HHHhhcccCCCCeEEEEccCCC
Q 046346 150 VGGGTGTAAKAIAKAFP--KLECTCFDLP-HVVNGLESDLVNLKYVGGDMFK 198 (209)
Q Consensus 150 vGgG~G~~~~~l~~~~P--~l~~~~~Dlp-~v~~~a~~~~~ri~~~~gD~~~ 198 (209)
|=||+|.++.++++.+- +.++++.++. +..+...+...++.++.+|+.+
T Consensus 6 ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~ 57 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTD 57 (240)
T ss_pred EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCC
Confidence 44455666666665543 4567777773 3332222123456777777754
No 396
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=34.00 E-value=99 Score=25.14 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=26.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP 176 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp 176 (209)
...|+-||||..-++.++.-+..+++++++|..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~ 53 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERS 53 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 356899999998887776666667899999874
No 397
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=33.90 E-value=32 Score=28.24 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCe-EEEeec
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL 175 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dl 175 (209)
+..+++|||+|+-.+ .++...+..+ +++.|.
T Consensus 56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy 87 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDY 87 (256)
T ss_dssp -EEEEEEES-TT--G--GGTTGGGTEEEEEEEES
T ss_pred CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeec
Confidence 457999999999665 3444444443 556664
No 398
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=33.75 E-value=81 Score=27.33 Aligned_cols=40 Identities=25% Similarity=0.608 Sum_probs=26.8
Q ss_pred HHHHHHhccccccCCCeEEEecCCccH-----HHHHHHHHCCCCeE
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGT-----AAKAIAKAFPKLEC 170 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~-----~~~~l~~~~P~l~~ 170 (209)
++..++.+| .+.+...+-++|||+|. ++..+...||+...
T Consensus 79 ir~~~E~cD-~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i 123 (382)
T cd06059 79 IRKQVEKCD-SLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILI 123 (382)
T ss_pred HHHHHHhCC-CcCceEEEEecCCCcchhHHHHHHHHHHHhcCccce
Confidence 345567776 36678899999998862 23346677886543
No 399
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=33.68 E-value=57 Score=28.02 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=24.5
Q ss_pred eEEEecCCccHH--HHHHHHHCCCCeEEEeechH
Q 046346 146 SLVDVGGGTGTA--AKAIAKAFPKLECTCFDLPH 177 (209)
Q Consensus 146 ~vlDvGgG~G~~--~~~l~~~~P~l~~~~~Dlp~ 177 (209)
.|+-||||.--. +..|++++|+.+++++|...
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 578899985444 34677888999999999853
No 400
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=33.67 E-value=51 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=27.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||.+-.+.+++-..-+.+++++|.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEG 35 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcC
Confidence 5799999999999888777777899999997
No 401
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=33.57 E-value=67 Score=23.25 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=21.6
Q ss_pred CCCCHHHHHH---------------HHhCCCCC---CCCCceecCHh
Q 046346 49 KPMTLNELQK---------------LVSSGNNN---DEEQGYVLTNA 77 (209)
Q Consensus 49 ~~~t~~eLA~---------------L~~~g~~e---~~~~~y~~t~~ 77 (209)
++.|+++||+ |...|+++ ...|.|.++..
T Consensus 24 ~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~ 70 (135)
T TIGR02010 24 GPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRP 70 (135)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccCC
Confidence 5899999999 67788843 34567877764
No 402
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=33.48 E-value=2.3e+02 Score=24.48 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=46.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-----CCCeEEEEc-cCCC-CCCC--CcEEE
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-----LVNLKYVGG-DMFK-AISP--ADAVV 207 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~~ri~~~~g-D~~~-~~p~--~D~~~ 207 (209)
.....|+|==||||.++++..-- ++++++.|+ ..++..|+.. ...+.+..+ |..+ |+|. .|.|.
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIa 269 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIA 269 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEE
Confidence 34679999999999999988655 778999999 5777777641 234444454 7766 6776 77764
No 403
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=33.45 E-value=60 Score=28.35 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=24.3
Q ss_pred eEEEecCCccHHHHH--HHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKA--IAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~--l~~~~P~l~~~~~Dl 175 (209)
+||-||||.+.++.+ +++..|+.+++++|.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~ 33 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEK 33 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEEC
Confidence 689999999877765 566678888999986
No 404
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=33.04 E-value=60 Score=27.55 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=25.5
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEeec
Q 046346 147 LVDVGGGTGTAAKAIAKAFPK-LECTCFDL 175 (209)
Q Consensus 147 vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl 175 (209)
|+-||||.+-.+.+++-.-.+ .+++++|.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~ 31 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEA 31 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeC
Confidence 788999999999987777777 99999997
No 405
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=32.82 E-value=60 Score=27.41 Aligned_cols=30 Identities=33% Similarity=0.329 Sum_probs=25.6
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046346 147 LVDVGGGTGTAAKAIAKAFPKLECTCFDLP 176 (209)
Q Consensus 147 vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp 176 (209)
|+-||+|.+-.+.+++-+-.+.+++++|..
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~ 31 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEAT 31 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 678999999999887777778999999983
No 406
>PRK08013 oxidoreductase; Provisional
Probab=32.69 E-value=59 Score=28.04 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=27.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||..-.+.+++-+..+++++++|.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeC
Confidence 4689999999999998887778999999997
No 407
>PLN02427 UDP-apiose/xylose synthase
Probab=32.57 E-value=1.2e+02 Score=25.99 Aligned_cols=53 Identities=8% Similarity=0.071 Sum_probs=34.2
Q ss_pred CeEEEecCCccHHHHHHHHHCC---CCeEEEeech-HHHhhccc-----CCCCeEEEEccCCC
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFP---KLECTCFDLP-HVVNGLES-----DLVNLKYVGGDMFK 198 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P---~l~~~~~Dlp-~v~~~a~~-----~~~ri~~~~gD~~~ 198 (209)
.+|+ |=||+|.++..|+++.- ..+++++|+. .-+..... ...+++++.+|+.+
T Consensus 15 ~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d 76 (386)
T PLN02427 15 LTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKH 76 (386)
T ss_pred cEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCC
Confidence 4555 67788888888877653 3578888863 22221110 12479999999976
No 408
>CHL00194 ycf39 Ycf39; Provisional
Probab=32.36 E-value=1.1e+02 Score=25.45 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=34.6
Q ss_pred ecCCccHHHHHHHHHC--CCCeEEEeechHH-HhhcccCCCCeEEEEccCCCC------CCCCcEEE
Q 046346 150 VGGGTGTAAKAIAKAF--PKLECTCFDLPHV-VNGLESDLVNLKYVGGDMFKA------ISPADAVV 207 (209)
Q Consensus 150 vGgG~G~~~~~l~~~~--P~l~~~~~Dlp~v-~~~a~~~~~ri~~~~gD~~~~------~p~~D~~~ 207 (209)
|=||+|.++..++++. .+.+++++++... .... ...+++++.+|+.++ +.++|+++
T Consensus 5 VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l--~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi 69 (317)
T CHL00194 5 VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL--KEWGAELVYGDLSLPETLPPSFKGVTAII 69 (317)
T ss_pred EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH--hhcCCEEEECCCCCHHHHHHHHCCCCEEE
Confidence 4578898888777663 3457777877421 1111 124689999998863 22367654
No 409
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=32.25 E-value=73 Score=28.26 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=24.9
Q ss_pred HHhccccccCCCeEEEecCCcc-----HHHHHHHHHCCCC
Q 046346 134 IQKCKNVFEGLNSLVDVGGGTG-----TAAKAIAKAFPKL 168 (209)
Q Consensus 134 ~~~~~~~~~~~~~vlDvGgG~G-----~~~~~l~~~~P~l 168 (209)
++..+ .+.+...+-.+||||| .++..|...||+.
T Consensus 124 ~E~cd-~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~ 162 (431)
T cd02188 124 ADGSD-SLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKK 162 (431)
T ss_pred HhcCC-CcceeEEEecCCCCcchhHHHHHHHHHHhHcCcc
Confidence 34444 2567788999999998 4556788889965
No 410
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=32.14 E-value=58 Score=28.00 Aligned_cols=32 Identities=31% Similarity=0.216 Sum_probs=27.4
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP 176 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp 176 (209)
..|+-||||.+-.+.+++-...+.+++++|..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCC
Confidence 36899999999999988777778999999973
No 411
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=32.05 E-value=62 Score=27.89 Aligned_cols=31 Identities=6% Similarity=0.067 Sum_probs=27.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||.+-.+.+++-+..+.+++++|.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~ 33 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEEC
Confidence 4689999999999998877777899999997
No 412
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=31.97 E-value=56 Score=27.97 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=26.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||.+-.+.+++-+.-+++++++|.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 4689999999999998777777899999996
No 413
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=31.89 E-value=59 Score=28.72 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=25.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.|+-||+|+|-+..++.-+.-+.+++++|.
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~ 31 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVER 31 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 378899999999888877777889988885
No 414
>PRK06370 mercuric reductase; Validated
Probab=31.88 E-value=61 Score=28.63 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=26.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||+|-+..++.-+.-+.+++++|.
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~ 36 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIER 36 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4689999999999888877767889998885
No 415
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=31.77 E-value=49 Score=22.11 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=19.5
Q ss_pred CCCHHHHHH----HHhCCCCCC----C---CCceecCHhhhhhh
Q 046346 50 PMTLNELQK----LVSSGNNND----E---EQGYVLTNASKLLL 82 (209)
Q Consensus 50 ~~t~~eLA~----L~~~g~~e~----~---~~~y~~t~~s~~l~ 82 (209)
.+|...|+. |...|++++ . .-.|.+|+.|+.|.
T Consensus 30 ~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 30 GISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp TS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 355555554 788998432 1 12599999997654
No 416
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=31.71 E-value=32 Score=21.64 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=14.8
Q ss_pred HcCchhHhhhCCCCCCHHHHHH
Q 046346 37 QLGIPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 37 ~lglfd~L~~~g~~~t~~eLA~ 58 (209)
++.++..|.. ++.+.++||+
T Consensus 2 ~~~il~~L~~--~~~~~~eLa~ 21 (69)
T TIGR00122 2 PLRLLALLAD--NPFSGEKLGE 21 (69)
T ss_pred hHHHHHHHHc--CCcCHHHHHH
Confidence 3456677775 6788999998
No 417
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=31.70 E-value=99 Score=21.11 Aligned_cols=61 Identities=18% Similarity=0.070 Sum_probs=34.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCCCCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~p~~D~~~l 208 (209)
..+++|-||||.=.....-.-.--+.+.+++.-.. ... .+++++..-.|-+.+..+|+++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~~~---~~~i~~~~~~~~~~l~~~~lV~~ 66 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--EFS---EGLIQLIRREFEEDLDGADLVFA 66 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--HHH---HTSCEEEESS-GGGCTTESEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--hhh---hhHHHHHhhhHHHHHhhheEEEe
Confidence 45788889997766655433333346777777432 111 26677766666434555777664
No 418
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=31.62 E-value=69 Score=27.33 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=26.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
...|+-||||.+-.+.+++-...+.+++++|.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~ 36 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEH 36 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcC
Confidence 45788999999988888777767889999996
No 419
>PHA01634 hypothetical protein
Probab=31.57 E-value=70 Score=23.64 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=23.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCe-EEEeec
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL 175 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dl 175 (209)
..++|+|||++-|.-++-++-+ +++ ++.++-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~ 59 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEK 59 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEecc
Confidence 4689999999999999988776 444 455554
No 420
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=31.52 E-value=55 Score=22.40 Aligned_cols=12 Identities=25% Similarity=0.080 Sum_probs=7.4
Q ss_pred HHhCCCCCCCCC
Q 046346 59 LVSSGNNNDEEQ 70 (209)
Q Consensus 59 L~~~g~~e~~~~ 70 (209)
|..+|++|...|
T Consensus 45 Le~~GLler~~g 56 (92)
T PF10007_consen 45 LEEMGLLERVEG 56 (92)
T ss_pred HHHCCCeEEecC
Confidence 778887554333
No 421
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=31.45 E-value=59 Score=26.51 Aligned_cols=30 Identities=17% Similarity=0.458 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCchhHhhhCCCCCCHHHHHH
Q 046346 28 NSMTLKCSIQLGIPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 28 ~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~ 58 (209)
..++|...++..|.+.|... +|+.+.|||+
T Consensus 16 v~kalaS~vRv~Il~lL~~k-~plNvneiAe 45 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK-GPLNVNEIAE 45 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 45677888899999999986 7999999999
No 422
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=31.42 E-value=63 Score=28.28 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=24.7
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
-.|+-||+|+|-+..+..-+..+.+++++|.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~ 34 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEE 34 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 3589999999888887666667788888885
No 423
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=31.11 E-value=67 Score=28.07 Aligned_cols=33 Identities=18% Similarity=0.014 Sum_probs=23.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
...+||-||||.|.+..+..-..++.+++++|.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~ 41 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISP 41 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcC
Confidence 357899999999987654332334678899985
No 424
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=31.05 E-value=1e+02 Score=25.30 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=29.8
Q ss_pred eEEEecCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCCCCcEEEe
Q 046346 146 SLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPADAVVL 208 (209)
Q Consensus 146 ~vlDvGgG~--G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p~~D~~~l 208 (209)
+|.=||.|. |.++..|.++ +.+++++|. ++.++.+.+. ..+.....+. +....+|++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~-g~~~~~~~~~-~~~~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIER-GLVDEASTDL-SLLKDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC-CCcccccCCH-hHhcCCCEEEE
Confidence 355567554 4455555544 457888997 5555555422 1121111121 12334788876
No 425
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=30.98 E-value=88 Score=26.41 Aligned_cols=65 Identities=22% Similarity=0.429 Sum_probs=49.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHC----CCCeEEEeech---HHHhhcccCCCCeEEEE-ccCCC----CCCC--CcEEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAF----PKLECTCFDLP---HVVNGLESDLVNLKYVG-GDMFK----AISP--ADAVV 207 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~----P~l~~~~~Dlp---~v~~~a~~~~~ri~~~~-gD~~~----~~p~--~D~~~ 207 (209)
...-++|+---.......+++.- .+++++++|+| +.|+..++..-||.++. ||..- .+|. .|+|+
T Consensus 127 ~~~g~idld~~~~~Nl~~vA~algk~v~dltV~vLdRpRH~~lI~eiR~~Gari~Li~DGDV~~ai~~~~~~s~vD~~~ 205 (309)
T cd01516 127 GAKGVIDLDAPVAENLRAVAKALGKPVEDLTVVVLDRPRHAALIEEIREAGARIKLIPDGDVAAAIATALPGSGVDVLM 205 (309)
T ss_pred ccCCeecCCCCHHHHHHHHHHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEE
Confidence 34567888888888888888876 67899999996 77787887788998876 57643 3554 68875
No 426
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=30.55 E-value=65 Score=29.05 Aligned_cols=31 Identities=32% Similarity=0.316 Sum_probs=27.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEee
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFD 174 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~D 174 (209)
...|+-||||++-++.++.-+..++++++++
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 4789999999999999888888889988875
No 427
>PF14557 AphA_like: Putative AphA-like transcriptional regulator
Probab=29.88 E-value=79 Score=24.28 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=19.7
Q ss_pred HHHHHcCchhHhhhCCCCCCHHHHHH
Q 046346 33 KCSIQLGIPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 33 ~~a~~lglfd~L~~~g~~~t~~eLA~ 58 (209)
+-++++++.-.|.. +|.+++++|+
T Consensus 9 re~v~L~vLG~la~--~p~~~~~va~ 32 (175)
T PF14557_consen 9 REAVRLCVLGTLAR--GPRRYEEVAG 32 (175)
T ss_pred HHHHHHHHHHHHhc--CCcCHHHHHH
Confidence 45677777778886 7999999999
No 428
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=29.83 E-value=55 Score=26.90 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=11.2
Q ss_pred cCCCeEEEecCCcc
Q 046346 142 EGLNSLVDVGGGTG 155 (209)
Q Consensus 142 ~~~~~vlDvGgG~G 155 (209)
.+...++|||||+=
T Consensus 111 ~~~~lviDIGGGSt 124 (285)
T PF02541_consen 111 DKNGLVIDIGGGST 124 (285)
T ss_dssp TSSEEEEEEESSEE
T ss_pred cCCEEEEEECCCce
Confidence 45678999999974
No 429
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=29.82 E-value=36 Score=25.51 Aligned_cols=42 Identities=14% Similarity=-0.008 Sum_probs=31.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES 184 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 184 (209)
+....--+-||||.-..-.+.++|++|+.+.--+.....++.
T Consensus 57 ~~~~~GIliCGtGiG~siaANK~~GiRAA~~~d~~sA~~ar~ 98 (148)
T TIGR02133 57 DAADLGIVIGGSGNGEAIAANKVKGARAALAWDTASAGRARL 98 (148)
T ss_pred CCCceEEEEcCCChhheeeecccCCeEEEEECCHHHHHHHHH
Confidence 334456678999999999999999999865555666666663
No 430
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=29.78 E-value=38 Score=20.62 Aligned_cols=18 Identities=17% Similarity=0.468 Sum_probs=14.3
Q ss_pred chhHhhhCCCCCCHHHHHH
Q 046346 40 IPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 40 lfd~L~~~g~~~t~~eLA~ 58 (209)
|.+.|... +.+|+++||+
T Consensus 5 Il~~l~~~-~~~s~~ela~ 22 (57)
T PF08220_consen 5 ILELLKEK-GKVSVKELAE 22 (57)
T ss_pred HHHHHHHc-CCEEHHHHHH
Confidence 56677765 6899999998
No 431
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=29.74 E-value=71 Score=27.43 Aligned_cols=31 Identities=6% Similarity=0.157 Sum_probs=26.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||.+-.+.++.-+..+.+++++|.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~ 33 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 4689999999999988877777899999997
No 432
>PTZ00387 epsilon tubulin; Provisional
Probab=29.66 E-value=1.2e+02 Score=27.17 Aligned_cols=37 Identities=22% Similarity=0.571 Sum_probs=26.6
Q ss_pred HHHHHhccccccCCCeEEEecCCcc-----HHHHHHHHHCCCC
Q 046346 131 SVMIQKCKNVFEGLNSLVDVGGGTG-----TAAKAIAKAFPKL 168 (209)
Q Consensus 131 ~~~~~~~~~~~~~~~~vlDvGgG~G-----~~~~~l~~~~P~l 168 (209)
...++..| .+.+...+-.+|||+| .++..|...||..
T Consensus 122 r~~~E~cD-~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~ 163 (465)
T PTZ00387 122 RRQVEQCD-SLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHV 163 (465)
T ss_pred HHHHHhcc-CcceEEEEeecCCCcchhHHHHHHHHHHHhcccC
Confidence 44556666 3667789999999997 3444677788876
No 433
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=29.17 E-value=77 Score=27.48 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=33.0
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHH----HHHHHHHC---CCCeEEEeech
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTA----AKAIAKAF---PKLECTCFDLP 176 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~----~~~l~~~~---P~l~~~~~Dlp 176 (209)
.+.|++.+. -...-+|||+|-|.|.- ..+|+++. |.+|.|+++.|
T Consensus 99 NqaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~ 150 (374)
T PF03514_consen 99 NQAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPP 150 (374)
T ss_pred hHHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCC
Confidence 355677776 34678999999999964 34555553 88899999984
No 434
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=29.12 E-value=72 Score=27.59 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=24.4
Q ss_pred eEEEecCCccHHHHHHHHH-CCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKA-FPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl 175 (209)
+|+-||||.+-++.+++-+ .++.+++++|.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er 32 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEA 32 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEec
Confidence 5889999999888886654 45678999997
No 435
>PRK06116 glutathione reductase; Validated
Probab=28.92 E-value=72 Score=28.05 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=25.5
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDLP 176 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp 176 (209)
.|+-||||+|-+..++.-..-..+++++|..
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5899999998888877776668899999953
No 436
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=28.88 E-value=36 Score=21.97 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=13.4
Q ss_pred HHHHHhCCCCCC-CCC---ceecCHhh
Q 046346 56 LQKLVSSGNNND-EEQ---GYVLTNAS 78 (209)
Q Consensus 56 LA~L~~~g~~e~-~~~---~y~~t~~s 78 (209)
|+.|+..|.++. ..| .|.+|+.+
T Consensus 44 lsRl~~~G~L~~~r~Gr~~~Y~Lt~~g 70 (70)
T PF07848_consen 44 LSRLVRRGWLESERRGRRSYYRLTERG 70 (70)
T ss_dssp HHHHHHTTSEEEECCCTEEEEEE-HHH
T ss_pred HHHHHHcCceeeeecCccceEeeCCCC
Confidence 333788898553 233 48888753
No 437
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=28.81 E-value=2.9e+02 Score=24.09 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=38.9
Q ss_pred eEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCC-------CCCCcEEEe
Q 046346 146 SLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPADAVVL 208 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~-------~p~~D~~~l 208 (209)
+++=+|+ |.++..+++.. -+.+++++|. ++.++.+++ ...+.++.||..++ ...+|.+++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~-~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD-RLDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh-hcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 3555665 78888777753 3567889998 565665542 23578888998762 233777764
No 438
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=28.81 E-value=86 Score=25.73 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCcc
Q 046346 111 EPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTG 155 (209)
Q Consensus 111 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G 155 (209)
|+. .+.|.+++.......+...... .......++|||+++.
T Consensus 9 n~~-~~~~~~~~~~~d~~~i~~~A~~---~~~~GAdiIDVg~~~~ 49 (261)
T PRK07535 9 NGT-RKSIAEAIEAKDAAFIQKLALK---QAEAGADYLDVNAGTA 49 (261)
T ss_pred chh-hHHHHHHHHcCCHHHHHHHHHH---HHHCCCCEEEECCCCC
Confidence 344 5677777775443222222222 2356799999999986
No 439
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=28.70 E-value=86 Score=26.09 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=29.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.+...|+-.|-.....+..++++||+.+++++|-
T Consensus 60 ~g~dlIi~~g~~~~~~~~~vA~~yPd~~F~~~d~ 93 (306)
T PF02608_consen 60 QGYDLIIGHGFEYSDALQEVAKEYPDTKFIIIDG 93 (306)
T ss_dssp TT-SEEEEESGGGHHHHHHHHTC-TTSEEEEESS
T ss_pred cCCCEEEEccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 5678899999999999999999999999999985
No 440
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=28.54 E-value=37 Score=26.50 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=26.6
Q ss_pred HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC---CCCceecCHhh
Q 046346 37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNND---EEQGYVLTNAS 78 (209)
Q Consensus 37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~---~~~~y~~t~~s 78 (209)
++.++..|... ++.+..+||+ |...|+++. ....|.+|+.|
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~r~~~~~lT~~G 203 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGRKGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCCccEEEeCCCC
Confidence 44566666654 5788888888 667787442 34567777653
No 441
>PLN02206 UDP-glucuronate decarboxylase
Probab=28.50 E-value=1.7e+02 Score=25.94 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=37.5
Q ss_pred CCeEEEecCCccHHHHHHHHHC--CCCeEEEeechHH--Hhhccc--CCCCeEEEEccCCCCCC-CCcEEE
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAF--PKLECTCFDLPHV--VNGLES--DLVNLKYVGGDMFKAIS-PADAVV 207 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dlp~v--~~~a~~--~~~ri~~~~gD~~~~~p-~~D~~~ 207 (209)
..+|+ |=||+|.++..|+++. -+.+++++|.... .+.... ...+++++.+|..++.- .+|.|+
T Consensus 119 ~~kIL-VTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~Vi 188 (442)
T PLN02206 119 GLRVV-VTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIY 188 (442)
T ss_pred CCEEE-EECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEE
Confidence 35555 5567888888777654 2456777775211 111000 23578999999887533 367764
No 442
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=28.48 E-value=61 Score=28.61 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=20.8
Q ss_pred ccCCCeEEEecC-------------------------CccHHHHHHHHH
Q 046346 141 FEGLNSLVDVGG-------------------------GTGTAAKAIAKA 164 (209)
Q Consensus 141 ~~~~~~vlDvGg-------------------------G~G~~~~~l~~~ 164 (209)
+++..+|+|||| |||.++...+++
T Consensus 265 ~P~vrTIIDIGGQDsK~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~ 313 (432)
T TIGR02259 265 YPGTRTVLDIGGQDTKGIQIDDHGIVENFQMNDRCAAGCGRYLGYIADE 313 (432)
T ss_pred CCCCCEEEEeCCCceEEEEEcCCCcEeeeeecCcccccchHHHHHHHHH
Confidence 467799999999 999999888776
No 443
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.46 E-value=1.2e+02 Score=26.05 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=38.4
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhhcccC
Q 046346 141 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD 185 (209)
Q Consensus 141 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~ 185 (209)
+....++|-+|.|+ |.++...++.+-..++++.|+ +.-++.|+++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~ 213 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF 213 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh
Confidence 45678999999996 888888999999999999999 7778888863
No 444
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=28.35 E-value=66 Score=29.36 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=24.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||++.++.++.-+..+.+++++|.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~ 35 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK 35 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence 4689999999998887665556788888885
No 445
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.35 E-value=95 Score=27.84 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHH
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVV 179 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~ 179 (209)
...++-||+|.|-++.++.-+--.++++|++....+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~ 38 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence 357899999999999998888889999999964443
No 446
>PTZ00117 malate dehydrogenase; Provisional
Probab=28.33 E-value=1.7e+02 Score=24.67 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=36.6
Q ss_pred CCeEEEecCCc-cHHHHHHHHHCCCCeEEEeechHHHhhcc--------c-CCCCeEEEE-ccCCCCCCCCcEEEe
Q 046346 144 LNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDLPHVVNGLE--------S-DLVNLKYVG-GDMFKAISPADAVVL 208 (209)
Q Consensus 144 ~~~vlDvGgG~-G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~--------~-~~~ri~~~~-gD~~~~~p~~D~~~l 208 (209)
..+|.-||+|+ |.....++....-...+++|+.+-...+. . ...+..... .|+ +.+..+|++++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVi 79 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVI 79 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEE
Confidence 45789999988 76666555555435688999843111111 1 122233332 454 36667898875
No 447
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=28.11 E-value=74 Score=27.56 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=25.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
+|+-||+|++-.+.++.-+-.+++++++|.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~ 31 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLER 31 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEec
Confidence 588999999998888777777889999986
No 448
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=27.72 E-value=58 Score=28.60 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=22.8
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 147 LVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 147 vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
||-||||++-++.+++.+--.+++++++.
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~ 30 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEK 30 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-S
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEEC
Confidence 78899999999999988888999999997
No 449
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=27.68 E-value=80 Score=23.75 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=26.2
Q ss_pred cCCCeEEEecCCccH------------H--HHHHHHHCCCCeEEEeec
Q 046346 142 EGLNSLVDVGGGTGT------------A--AKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 142 ~~~~~vlDvGgG~G~------------~--~~~l~~~~P~l~~~~~Dl 175 (209)
.+...+||+||+.=. . ......+.|+.+++++|.
T Consensus 34 ~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd~ 81 (153)
T PF00549_consen 34 GGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVDI 81 (153)
T ss_dssp CTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEEE
T ss_pred CCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEEe
Confidence 356899999999873 2 334556689999999997
No 450
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=27.56 E-value=78 Score=28.05 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=25.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
-.|+-||||+|-+..++.-.--+.+++++|.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~ 35 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEK 35 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEEc
Confidence 4689999999888888777767889999985
No 451
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=27.50 E-value=83 Score=26.80 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=26.7
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||..-.+.++.-+..+.+++++|.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~ 38 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAP 38 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeC
Confidence 4699999999998888777777899999997
No 452
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=27.23 E-value=81 Score=27.64 Aligned_cols=30 Identities=33% Similarity=0.302 Sum_probs=24.4
Q ss_pred eEEEecCCccHHHHHHHHHC----CCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAF----PKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~----P~l~~~~~Dl 175 (209)
.|+-||||.+-.+.+++-+. .+++++++|.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 47899999998888766554 5789999997
No 453
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=27.14 E-value=80 Score=27.80 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=25.6
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.|+-||||+|-+..++..+.-+.+++++|.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~ 33 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEE 33 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 478899999999998888877888888885
No 454
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=27.11 E-value=27 Score=24.10 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=17.1
Q ss_pred HHhCCCCC-CCCC---ceecCHhhhhhh
Q 046346 59 LVSSGNNN-DEEQ---GYVLTNASKLLL 82 (209)
Q Consensus 59 L~~~g~~e-~~~~---~y~~t~~s~~l~ 82 (209)
|+..|+++ ..++ .|.+|+.|..|.
T Consensus 55 L~~~Gli~~~~~~~~~~y~lT~KG~~fl 82 (95)
T COG3432 55 LVEKGLIIKQDNGRRKVYELTEKGKRFL 82 (95)
T ss_pred HHhCCCEEeccCCccceEEEChhHHHHH
Confidence 89999633 3333 699999997554
No 455
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=27.09 E-value=50 Score=29.71 Aligned_cols=59 Identities=25% Similarity=0.264 Sum_probs=37.0
Q ss_pred HHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC---CCCceecCHhhhhhhc-CCCcccchhhhhh
Q 046346 36 IQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNND---EEQGYVLTNASKLLLK-DNPLSQQLRSWFQ 96 (209)
Q Consensus 36 ~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~---~~~~y~~t~~s~~l~~-~~~~~~~l~~~l~ 96 (209)
.+..|...|... +++|..+||+ |.+.|+++. ....|.+|+.|+.+.. ..|. ..+.+++.
T Consensus 7 ~e~~vL~~L~~~-~~~s~~eLA~~l~l~~~tVt~~i~~Le~kGlV~~~~~~~~~i~LTeeG~~~~~~g~pE-~rl~~~l~ 84 (489)
T PRK04172 7 NEKKVLKALKEL-KEATLEELAEKLGLPPEAVMRAAEWLEEKGLVKVEERVEEVYVLTEEGKKYAEEGLPE-RRLLNALK 84 (489)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEEEeeeEEEEEECHHHHHHHHhcCHH-HHHHHhhH
Confidence 344556666654 5788888888 778888442 2356999999975554 3333 33444443
No 456
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=27.01 E-value=91 Score=26.66 Aligned_cols=32 Identities=34% Similarity=0.232 Sum_probs=27.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
...|+-||||.+-.+.++.-.--+++++++|.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~ 37 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEG 37 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeC
Confidence 35689999999999998777777889999997
No 457
>PRK06126 hypothetical protein; Provisional
Probab=26.86 E-value=76 Score=28.70 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
...|+-||||.+-++.++.-..-+.+++++|.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr 38 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVER 38 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 46799999999999999877777899999996
No 458
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=26.86 E-value=74 Score=20.00 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=16.4
Q ss_pred ecCCccHHHHH-HHHHCCCCeEEEeech
Q 046346 150 VGGGTGTAAKA-IAKAFPKLECTCFDLP 176 (209)
Q Consensus 150 vGgG~G~~~~~-l~~~~P~l~~~~~Dlp 176 (209)
||+|.+-++.+ .+++. +.+++++|..
T Consensus 2 iGaG~sGl~aA~~L~~~-g~~v~v~E~~ 28 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKA-GYRVTVFEKN 28 (68)
T ss_dssp ES-SHHHHHHHHHHHHT-TSEEEEEESS
T ss_pred EeeCHHHHHHHHHHHHC-CCcEEEEecC
Confidence 78885555544 44443 7799999974
No 459
>PF09114 MotA_activ: Transcription factor MotA, activation domain; InterPro: IPR015198 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the N-terminal (activation) domain of MotA factors that binds sigma70. The N-terminal domain adopts an almost completely alpha-helical topology, with five alpha-helices and a short, two-stranded, beta-ribbon. Four alpha helices (alpha1, alpha3, alpha4 and alpha5) are amphipathic and pack their hydrophobic surfaces around the central helix alpha2 [].; PDB: 1BJA_B 1I1S_A.
Probab=26.84 E-value=56 Score=22.31 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.0
Q ss_pred HHhCCCCCCCCCceecCHhhhhhh
Q 046346 59 LVSSGNNNDEEQGYVLTNASKLLL 82 (209)
Q Consensus 59 L~~~g~~e~~~~~y~~t~~s~~l~ 82 (209)
|...|++|++++.|..|..+..+.
T Consensus 56 LIKkglIEKSGDGlv~T~~g~~Ii 79 (96)
T PF09114_consen 56 LIKKGLIEKSGDGLVITEEGMDII 79 (96)
T ss_dssp HHHTTSEEEETTEEEE-HHHHHHH
T ss_pred HHHcCcccccCCceEEechHHHHH
Confidence 777889998888899999987554
No 460
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=26.75 E-value=84 Score=26.74 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=25.7
Q ss_pred CeEEEecCCccHHHHHHHHHCC---CCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFP---KLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P---~l~~~~~Dl 175 (209)
..|+-||+|.+-.+.++.-+.- +.+++++|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 4689999999988888766554 889999998
No 461
>PRK15076 alpha-galactosidase; Provisional
Probab=26.66 E-value=1.2e+02 Score=26.91 Aligned_cols=64 Identities=22% Similarity=0.206 Sum_probs=37.5
Q ss_pred CeEEEecCCc-cHHHH---HHH--HHCCCCeEEEeec-hHHHhhccc--------CCCCeEEE-EccCCCCCCCCcEEEe
Q 046346 145 NSLVDVGGGT-GTAAK---AIA--KAFPKLECTCFDL-PHVVNGLES--------DLVNLKYV-GGDMFKAISPADAVVL 208 (209)
Q Consensus 145 ~~vlDvGgG~-G~~~~---~l~--~~~P~l~~~~~Dl-p~v~~~a~~--------~~~ri~~~-~gD~~~~~p~~D~~~l 208 (209)
.+|.-||+|+ |.... .++ ...+..+.+++|. ++.++.+.. ....+++. ..|..+.+..+|+++.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 3678899999 53321 332 5566678999998 333332221 22223443 5565556777888864
No 462
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=26.64 E-value=87 Score=27.70 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=26.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..-|+-||||+|-+..++...--.++-+.+|-
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEk 70 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEK 70 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEec
Confidence 46789999999999999998877777666664
No 463
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=26.60 E-value=2.2e+02 Score=24.07 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=29.5
Q ss_pred HHHHHHhccccccCCCeEEEecCCccHH----HHHHHHHCCCCeEEEeec
Q 046346 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTA----AKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~----~~~l~~~~P~l~~~~~Dl 175 (209)
.+.+.+.++ +....+-.|.|||-. +..|.+++|+++.+++|=
T Consensus 159 ~~EI~~~~~----g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP 204 (300)
T COG0031 159 GPEIWQQTD----GKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDP 204 (300)
T ss_pred HHHHHHHhC----CCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECC
Confidence 345555444 335667778888864 446778899999999995
No 464
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=26.49 E-value=54 Score=29.57 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=12.2
Q ss_pred CCCeEEEecCCccHHH
Q 046346 143 GLNSLVDVGGGTGTAA 158 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~ 158 (209)
....|+|||||+=.+.
T Consensus 132 ~~~lviDIGGGStEl~ 147 (496)
T PRK11031 132 DQRLVVDIGGASTELV 147 (496)
T ss_pred CCEEEEEecCCeeeEE
Confidence 3468999999986554
No 465
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=26.48 E-value=1.6e+02 Score=26.09 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=36.9
Q ss_pred eEEEecCCccHHHHHHHH-------HCCCCeEEEeec-hHHHhh----ccc----CCCCeEEEE-ccCCCCCCCCcEEEe
Q 046346 146 SLVDVGGGTGTAAKAIAK-------AFPKLECTCFDL-PHVVNG----LES----DLVNLKYVG-GDMFKAISPADAVVL 208 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~-------~~P~l~~~~~Dl-p~v~~~----a~~----~~~ri~~~~-gD~~~~~p~~D~~~l 208 (209)
+|+=||||+. ++..|.+ ..|..+.+++|+ ++-++. ++. ....+++.. -|.-+.+..+|.++.
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 5778999996 7765543 245567899998 333332 222 233455533 355446777888764
No 466
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=26.43 E-value=1.8e+02 Score=27.00 Aligned_cols=59 Identities=24% Similarity=0.284 Sum_probs=37.1
Q ss_pred CeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCC-------CCCCcEEE
Q 046346 145 NSLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPADAVV 207 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~-------~p~~D~~~ 207 (209)
.+++=+|+ |.++..+++.. .+.+++++|. |+.++.+++ .....+.||..++ ...+|+++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK--YGYKVYYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--CCCeEEEeeCCCHHHHHhcCCccCCEEE
Confidence 45555554 44555554432 3567899998 777777774 3466789998872 22377665
No 467
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=26.30 E-value=97 Score=25.26 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccH
Q 046346 116 NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT 156 (209)
Q Consensus 116 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~ 156 (209)
+.|.+++.......+...+.. .......++|||+++|.
T Consensus 14 ~~~~~~~~~~~~d~~~~~A~~---~~~~GAdiIDIG~~~~~ 51 (252)
T cd00740 14 KKFRELIKAEDYDEALDVARQ---QVEGGAQILDLNVDYGG 51 (252)
T ss_pred HHHHHHHHcCCHHHHHHHHHH---HHHCCCCEEEECCCCCC
Confidence 456666654433221111222 23567999999999884
No 468
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=26.23 E-value=2.4e+02 Score=23.21 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=20.7
Q ss_pred CCeEEEec-CCccHHHHHHHHHCCCCeEEEeechH
Q 046346 144 LNSLVDVG-GGTGTAAKAIAKAFPKLECTCFDLPH 177 (209)
Q Consensus 144 ~~~vlDvG-gG~G~~~~~l~~~~P~l~~~~~Dlp~ 177 (209)
..+|+-|| ||-|.++.+.+.|--==+.+++|...
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 34555555 45677777666665444677777643
No 469
>PLN02661 Putative thiazole synthesis
Probab=26.22 E-value=1.2e+02 Score=26.31 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=25.7
Q ss_pred CCeEEEecCCccHHHHHHHH-HCCCCeEEEeech
Q 046346 144 LNSLVDVGGGTGTAAKAIAK-AFPKLECTCFDLP 176 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~-~~P~l~~~~~Dlp 176 (209)
...|+-||+|...+..++.- +.|+++++++|..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~ 125 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQS 125 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 35789999998877776555 4688999999973
No 470
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=26.22 E-value=1.7e+02 Score=24.27 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHcCchh----HhhhC-CCCCCHHHHHH----HHhCCCCCC-CCCceecCHhh
Q 046346 24 FNFINSMTLKCSIQLGIPD----IINKH-GKPMTLNELQK----LVSSGNNND-EEQGYVLTNAS 78 (209)
Q Consensus 24 ~g~~~~~~l~~a~~lglfd----~L~~~-g~~~t~~eLA~----L~~~g~~e~-~~~~y~~t~~s 78 (209)
+..|...+|+..+.+.=++ .|.+. +.++|++++.+ |...|++++ ++|.|..|..+
T Consensus 119 ~~~W~~~virel~~~~~~~~~~~~ia~~l~p~is~~ev~~sL~~L~~~glikk~~~g~y~~t~~~ 183 (271)
T TIGR02147 119 YRHWYNSVIRELLGVMPFADDPEELAKRCFPKISAEQVKESLDLLERLGLIKKNEDGFYKQTDKA 183 (271)
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHCCCeeECCCCcEEeecce
Confidence 3457777888887763222 33332 24688888877 889999764 56789998764
No 471
>PRK06185 hypothetical protein; Provisional
Probab=26.18 E-value=81 Score=27.05 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=27.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
...|+-||||..-.+.++.-+..+++++++|.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~ 37 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEK 37 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 35789999999998888776667899999997
No 472
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=26.13 E-value=77 Score=28.00 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=25.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.|+-||||+|-+..++.-.--+.+++++|.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 33 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHGAKALLVEA 33 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEecc
Confidence 578999999988888777767888988885
No 473
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=26.05 E-value=2.2e+02 Score=20.49 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=19.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC---CCeEEEeec
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFP---KLECTCFDL 175 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P---~l~~~~~Dl 175 (209)
...+++-+|+| .++..+++..- ..+.++.|+
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcC
Confidence 35788999875 45554444332 345778887
No 474
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=26.04 E-value=1.5e+02 Score=24.00 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.8
Q ss_pred ccCCCeEEEecCCcc
Q 046346 141 FEGLNSLVDVGGGTG 155 (209)
Q Consensus 141 ~~~~~~vlDvGgG~G 155 (209)
......++||||++.
T Consensus 34 ~~~GAdiIDvG~~st 48 (258)
T cd00423 34 VEEGADIIDIGGEST 48 (258)
T ss_pred HHCCCCEEEECCCcC
Confidence 456799999999998
No 475
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.93 E-value=87 Score=27.79 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=25.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.|+-||+|+|-+..++.-..-+.+++++|.
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~ 34 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 589999999999888877777888888884
No 476
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=25.88 E-value=1e+02 Score=26.07 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=49.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHC----CCCeEEEeech---HHHhhcccCCCCeEEEE-ccCCC----CCCC--CcEEE
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAF----PKLECTCFDLP---HVVNGLESDLVNLKYVG-GDMFK----AISP--ADAVV 207 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~----P~l~~~~~Dlp---~v~~~a~~~~~ri~~~~-gD~~~----~~p~--~D~~~ 207 (209)
...-++|+---.......+++.. .+++++++|+| ..|+..++...||.++. ||..- .+|. .|+|+
T Consensus 127 ~~~G~vdl~~p~~~Nl~~vA~algk~~~dltV~vLdRpRH~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~s~vD~~~ 205 (321)
T TIGR00330 127 GAKGTIDLNLPLADNLRNVAKALGKPLSDLTVTILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLY 205 (321)
T ss_pred ccCCeecCCCCHHHHHHHHHHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEE
Confidence 34567888888888888888854 56789999996 77788887788998866 57632 4564 78875
No 477
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=25.87 E-value=1.1e+02 Score=21.71 Aligned_cols=47 Identities=11% Similarity=0.443 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhC
Q 046346 1 MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKH 47 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~ 47 (209)
|.+.++.++.+.+.....|++.+.=+.....+....-+++...+..+
T Consensus 10 ~rfl~~~e~ddPmtGvANLfDaamVfsva~LI~lv~Sy~lp~~lss~ 56 (121)
T COG4744 10 MRFLEDPEDDDPMTGVANLFDAAMVFSVALLIALVMSYHLPELLSSN 56 (121)
T ss_pred hhcccCccccCcchhhHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 45667777888999999999988877777777777888888888753
No 478
>PRK10637 cysG siroheme synthase; Provisional
Probab=25.76 E-value=1.9e+02 Score=25.81 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=39.8
Q ss_pred CCCeEEEecCCccHHHH--HHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCCCcEEEe
Q 046346 143 GLNSLVDVGGGTGTAAK--AIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISPADAVVL 208 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~--~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~~D~~~l 208 (209)
..++||-||||.=..-. .|++...+++++.-++ ++.-+.+ ...+|+++..+|-. .+..+++++.
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~--~~~~i~~~~~~~~~~dl~~~~lv~~ 78 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWA--DAGMLTLVEGPFDESLLDTCWLAIA 78 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH--hCCCEEEEeCCCChHHhCCCEEEEE
Confidence 56899999999865543 4566554544444344 3332222 25789999988865 3555777653
No 479
>PLN02463 lycopene beta cyclase
Probab=25.75 E-value=82 Score=28.02 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=26.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.-.|+-||||.+..+.+..-...+++++++|.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~ 59 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDP 59 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEecc
Confidence 35789999999998888666666899999996
No 480
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=25.72 E-value=62 Score=18.38 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=11.7
Q ss_pred chhHhhhCCCCCCHHHHHH
Q 046346 40 IPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 40 lfd~L~~~g~~~t~~eLA~ 58 (209)
+++.|... ++.+..+|++
T Consensus 5 il~~l~~~-~~~s~~~l~~ 22 (53)
T smart00420 5 ILELLAQQ-GKVSVEELAE 22 (53)
T ss_pred HHHHHHHc-CCcCHHHHHH
Confidence 34445544 5688888888
No 481
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=25.71 E-value=85 Score=27.22 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=33.5
Q ss_pred CeEEEecCCccHHHHH----HHHHCCCCeEEEeechHHHhh--ccc---CCCCeEEEEccCCC
Q 046346 145 NSLVDVGGGTGTAAKA----IAKAFPKLECTCFDLPHVVNG--LES---DLVNLKYVGGDMFK 198 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~----l~~~~P~l~~~~~Dlp~v~~~--a~~---~~~ri~~~~gD~~~ 198 (209)
.++|-+ ||+|.++.. |+++.+..++.++|..+.... .+. ...++++..+|+.+
T Consensus 5 ~~vlVt-GG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~ 66 (361)
T KOG1430|consen 5 LSVLVT-GGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLD 66 (361)
T ss_pred CEEEEE-CCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhh
Confidence 344544 566766654 455566778999998433211 111 26789999999986
No 482
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=25.71 E-value=1.2e+02 Score=25.12 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=29.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC----CeEEEeech
Q 046346 143 GLNSLVDVGGGTGTAAKAIAKAFPK----LECTCFDLP 176 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~~~l~~~~P~----l~~~~~Dlp 176 (209)
+..+++|+|.|+-.-+..|+..+-+ ++.+-+|..
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~ 115 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVS 115 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeeccc
Confidence 5789999999999988888888877 788999984
No 483
>PRK08267 short chain dehydrogenase; Provisional
Probab=25.69 E-value=1.7e+02 Score=23.07 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=29.2
Q ss_pred eEEEecCCccHHHHHHHHHCC--CCeEEEeec-hHHHhhccc-C-CCCeEEEEccCCC
Q 046346 146 SLVDVGGGTGTAAKAIAKAFP--KLECTCFDL-PHVVNGLES-D-LVNLKYVGGDMFK 198 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P--~l~~~~~Dl-p~v~~~a~~-~-~~ri~~~~gD~~~ 198 (209)
++|-+|| +|.++.++++++- +.+++++++ ++.++.... . ..++.++.+|+.+
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~ 59 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTD 59 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC
Confidence 4555554 4565655555442 457777776 232322221 1 3578888888875
No 484
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=25.43 E-value=47 Score=21.99 Aligned_cols=18 Identities=28% Similarity=0.672 Sum_probs=13.8
Q ss_pred chhHhhhCCCCCCHHHHHH
Q 046346 40 IPDIINKHGKPMTLNELQK 58 (209)
Q Consensus 40 lfd~L~~~g~~~t~~eLA~ 58 (209)
|+..|.. |.|+|+++||.
T Consensus 29 LLr~LA~-G~PVt~~~LA~ 46 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAA 46 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHH
T ss_pred HHHHHHc-CCCcCHHHHHH
Confidence 6778877 78999999999
No 485
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.33 E-value=90 Score=27.62 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=25.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||+|-+..++.-..-+.+++++|.
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~ 35 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK 35 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3689999999888887766666888988884
No 486
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=25.32 E-value=92 Score=26.86 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCeEEEecCCccHHHH--HHHHHCCCCeEEEeec
Q 046346 144 LNSLVDVGGGTGTAAK--AIAKAFPKLECTCFDL 175 (209)
Q Consensus 144 ~~~vlDvGgG~G~~~~--~l~~~~P~l~~~~~Dl 175 (209)
..+||-||||.+-+.. .|++..++.+++++|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~ 36 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSD 36 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 4679999999887665 4667778888888864
No 487
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=25.09 E-value=1.5e+02 Score=24.73 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=32.1
Q ss_pred ecCCccHHHHHHHHHC---CCCeEEEeechH-HHhhcccCCCCeEEEEccCCC
Q 046346 150 VGGGTGTAAKAIAKAF---PKLECTCFDLPH-VVNGLESDLVNLKYVGGDMFK 198 (209)
Q Consensus 150 vGgG~G~~~~~l~~~~---P~l~~~~~Dlp~-v~~~a~~~~~ri~~~~gD~~~ 198 (209)
|=||+|.++..|+++. .+.+++++|+.. ...... ...+++++.+|+.+
T Consensus 6 VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~~ 57 (347)
T PRK11908 6 ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLV-NHPRMHFFEGDITI 57 (347)
T ss_pred EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhc-cCCCeEEEeCCCCC
Confidence 6678899999888775 346788888732 221111 13468999999973
No 488
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=25.08 E-value=1.2e+02 Score=24.60 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=28.3
Q ss_pred ecCCccHHHHHHHHHC----CCCeEEEeechH---HHhhccc--CCCCeEEEEccCCC
Q 046346 150 VGGGTGTAAKAIAKAF----PKLECTCFDLPH---VVNGLES--DLVNLKYVGGDMFK 198 (209)
Q Consensus 150 vGgG~G~~~~~l~~~~----P~l~~~~~Dlp~---v~~~a~~--~~~ri~~~~gD~~~ 198 (209)
|=||+|.++..++++. ++.+++++|... -.+.... ...+++++.+|+.+
T Consensus 4 ItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 61 (317)
T TIGR01181 4 VTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGD 61 (317)
T ss_pred EEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcC
Confidence 3366777766665543 457788887521 1111111 12478888999876
No 489
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=25.00 E-value=39 Score=27.02 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=11.8
Q ss_pred CCCeEEEecCCccHHH
Q 046346 143 GLNSLVDVGGGTGTAA 158 (209)
Q Consensus 143 ~~~~vlDvGgG~G~~~ 158 (209)
...-|||||||+-.++
T Consensus 140 ~dg~VVDiGGGTTGIs 155 (277)
T COG4820 140 DDGGVVDIGGGTTGIS 155 (277)
T ss_pred CCCcEEEeCCCcceeE
Confidence 3578999999975443
No 490
>PRK08244 hypothetical protein; Provisional
Probab=24.96 E-value=84 Score=27.99 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=26.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||+|..-++.++.-+..+++++++|.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr 33 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIER 33 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 3588999999988888777777899999996
No 491
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.95 E-value=81 Score=26.48 Aligned_cols=23 Identities=30% Similarity=0.726 Sum_probs=19.2
Q ss_pred cCCCeEEEecC-------------------------CccHHHHHHHHH
Q 046346 142 EGLNSLVDVGG-------------------------GTGTAAKAIAKA 164 (209)
Q Consensus 142 ~~~~~vlDvGg-------------------------G~G~~~~~l~~~ 164 (209)
++.++|+|||| |||.++...+++
T Consensus 124 p~v~tIIDIGGQDsK~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~ 171 (293)
T TIGR03192 124 NAVRTILDMGGQDCKAIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDL 171 (293)
T ss_pred CCCCEEEEeCCCceEEEEEcCCCcEeeeeecCcccccccHHHHHHHHH
Confidence 35789999999 999998877776
No 492
>PRK06184 hypothetical protein; Provisional
Probab=24.94 E-value=89 Score=27.94 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=26.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
..|+-||||..-++.++.-..-+++++++|.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~ 34 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEK 34 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 4689999999999998777777889999997
No 493
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=24.93 E-value=83 Score=25.52 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=31.8
Q ss_pred EEEecCCccHHHHHHHHHCC--CCeEEEeechHHHhhcccCCCCeEEEEccCCC
Q 046346 147 LVDVGGGTGTAAKAIAKAFP--KLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198 (209)
Q Consensus 147 vlDvGgG~G~~~~~l~~~~P--~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~ 198 (209)
||-.|| +|.++..|+++.- +.+++++|+...-.... ..+++++.+|..+
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~d~~~ 53 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL--LSGVEFVVLDLTD 53 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCcccccc--ccccceeeecccc
Confidence 555555 9999999888876 56788888732221111 1466777777665
No 494
>PRK07846 mycothione reductase; Reviewed
Probab=24.78 E-value=86 Score=27.74 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=22.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
-++-||+|+|.+..++... +.++.++|.
T Consensus 3 D~vVIG~G~~g~~aa~~~~--G~~V~lie~ 30 (451)
T PRK07846 3 DLIIIGTGSGNSILDERFA--DKRIAIVEK 30 (451)
T ss_pred CEEEECCCHHHHHHHHHHC--CCeEEEEeC
Confidence 4788999999888777643 788888874
No 495
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=24.71 E-value=94 Score=27.34 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=24.9
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL 175 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl 175 (209)
.|+-||+|+|-+..++.-...+.+++++|.
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~ 34 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK 34 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 589999999888888766667888988885
No 496
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=24.67 E-value=87 Score=28.12 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=23.8
Q ss_pred CeEEEecCCccHHHHHHHHHCC-CCeEEEeec
Q 046346 145 NSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL 175 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl 175 (209)
--|+-||||+|-+..++...-. +.++.++|.
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 3588999999988877665554 788888884
No 497
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=24.38 E-value=1.8e+02 Score=27.05 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=38.1
Q ss_pred CeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCC-------CCCCcEEEe
Q 046346 145 NSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPADAVVL 208 (209)
Q Consensus 145 ~~vlDvGgG~-G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~-------~p~~D~~~l 208 (209)
.+++-+|+|. |......+++ .+.+++++|. |+.++.+++ .....+.||..++ ...+|+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHh--cCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 5777777664 4433333333 2567899998 676777763 3467789998762 223776653
No 498
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=24.28 E-value=81 Score=23.38 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=23.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHh
Q 046346 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HVVN 180 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp-~v~~ 180 (209)
.|.-+|+|++..+.+..-..-.-+++++.++ +.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~ 36 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIE 36 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHH
Confidence 3667899888777764444445778888884 4444
No 499
>PRK07326 short chain dehydrogenase; Provisional
Probab=24.25 E-value=1.6e+02 Score=22.75 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=31.1
Q ss_pred CeEEEecCCccHHHHHHHHHC--CCCeEEEeech-HHHhhc-ccC--CCCeEEEEccCCC
Q 046346 145 NSLVDVGGGTGTAAKAIAKAF--PKLECTCFDLP-HVVNGL-ESD--LVNLKYVGGDMFK 198 (209)
Q Consensus 145 ~~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dlp-~v~~~a-~~~--~~ri~~~~gD~~~ 198 (209)
.+++-+| |+|.++..+++++ .+.+++++++. .-.+.. +.. ..++.++.+|+.+
T Consensus 7 ~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~ 65 (237)
T PRK07326 7 KVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRD 65 (237)
T ss_pred CEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC
Confidence 5666666 4666666665544 25678888873 222221 111 1678888888764
No 500
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=24.23 E-value=2e+02 Score=26.29 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=32.7
Q ss_pred eEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC
Q 046346 146 SLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK 198 (209)
Q Consensus 146 ~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~ 198 (209)
+++-+ |.|.++..++++. -+.++++.|. ++.++.+++ ..+..+.||..+
T Consensus 419 hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--~g~~~i~GD~~~ 470 (558)
T PRK10669 419 HALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--RGIRAVLGNAAN 470 (558)
T ss_pred CEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--CCCeEEEcCCCC
Confidence 44444 4555666666653 2457899998 666777763 457789999887
Done!