Query 046348
Match_columns 358
No_of_seqs 142 out of 1016
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 11:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02258 9-cis-epoxycarotenoid 100.0 7.1E-90 1.5E-94 700.5 38.5 351 2-358 206-561 (590)
2 PLN02491 carotenoid 9,10(9',10 100.0 4.6E-88 9.9E-93 685.4 38.4 352 2-358 143-512 (545)
3 COG3670 Lignostilbene-alpha,be 100.0 8.6E-84 1.9E-88 618.4 25.8 317 30-358 131-464 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 2.5E-80 5.5E-85 626.9 35.5 321 29-358 116-462 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 5.1E-76 1.1E-80 604.8 35.9 320 31-358 176-582 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 1.3E-46 2.8E-51 378.3 20.8 350 2-358 199-553 (582)
7 KOG1285 Beta, beta-carotene 15 99.9 1.8E-20 3.9E-25 189.5 22.3 244 28-279 136-413 (582)
8 PF10282 Lactonase: Lactonase, 58.2 88 0.0019 30.2 10.0 99 42-148 47-162 (345)
9 COG3823 Glutamine cyclotransfe 37.9 24 0.00052 32.1 2.2 37 38-77 95-132 (262)
10 PF02239 Cytochrom_D1: Cytochr 36.4 1.2E+02 0.0026 29.8 7.1 67 270-358 45-111 (369)
11 KOG0303 Actin-binding protein 33.0 98 0.0021 30.8 5.6 65 34-115 230-295 (472)
12 PF02736 Myosin_N: Myosin N-te 30.7 54 0.0012 21.4 2.5 30 315-353 3-32 (42)
13 PF09843 DUF2070: Predicted me 30.7 68 0.0015 28.1 3.9 48 304-358 39-86 (179)
14 PF13570 PQQ_3: PQQ-like domai 28.7 64 0.0014 20.3 2.6 28 34-61 12-39 (40)
15 PF09826 Beta_propel: Beta pro 23.0 7.6E+02 0.017 25.6 10.5 62 35-104 327-392 (521)
16 PF14326 DUF4384: Domain of un 22.5 2.1E+02 0.0045 21.4 4.8 33 92-124 5-37 (83)
17 PF01011 PQQ: PQQ enzyme repea 22.5 2E+02 0.0044 17.9 4.0 20 288-307 10-29 (38)
18 PF05262 Borrelia_P83: Borreli 20.6 3.2E+02 0.007 28.1 7.0 69 276-358 362-431 (489)
No 1
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=7.1e-90 Score=700.46 Aligned_cols=351 Identities=37% Similarity=0.713 Sum_probs=321.2
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCcccCCCCcCcCceeeEEECCeEEEEecCCCCeEEecCCCCCceeeeecccccccccC
Q 046348 2 LSGIYGIADIIQCVAAVARVLMGHINLKKGFGLANTSLAFFSSKLLALGESDLPYIINSTREGDVETVGRWDFDEALFAS 81 (358)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~P~~ld~~~~~TLeT~g~~~~~~~l~~~ 81 (358)
+|+++|.+|++++.+...|.++|.++..+.+|+|||||++|+||||||||+|.||+++++|+.||||+|++||+|+|..+
T Consensus 206 ~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g~l~~~ 285 (590)
T PLN02258 206 IGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSS 285 (590)
T ss_pred cccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCceEecCCCCCCcccCcccccCCccCcc
Confidence 57788889999999999999999998888999999999999999999999999999998876799999999999999888
Q ss_pred CCCCceeeCCCCcEEEEEecCCCCCcEEEEEEcCCCCeEEeEeeecCCCcceeeceecCCCEeEEEeCccccCHHHHHcC
Q 046348 82 MTAHPKTDMTTKETFAFKFSPVFSPHLTFFRFDANGIKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLG 161 (358)
Q Consensus 82 ~tAHP~~Dp~tg~~~~~g~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdf~~Teny~V~~~~P~~~~~~~~l~~ 161 (358)
||||||+||.|||+++|+|+....++++|+++|++|++.+.+++ +++.++|||||+|||||+||+++|+.+++.+|+ .
T Consensus 286 ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i-~lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~-~ 363 (590)
T PLN02258 286 MIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEI-PLDQPTMMHDFAITENFVVIPDQQVVFKLSEMI-R 363 (590)
T ss_pred cccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEe-eCCCCccccceeccCceEEEEccCceEcHHHHh-h
Confidence 99999999999999999999876789999999999999999988 999999999999999999999999999999997 4
Q ss_pred CCCCeeecCCCCcEEEEEeCCCCCCCceEEEEcCCeeeeeecceeecC-CCeEEEEEeecCChhhhhccc-ccccceEEE
Q 046348 162 KGMPTVFVPEKIPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENG-DDEIVLMATTATSIENLFHKI-DMVHFSLEK 239 (358)
Q Consensus 162 ~~~~~~w~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~NA~E~~-~~~iv~D~~~~~~~~~~~~~~-~~~~~~l~R 239 (358)
+++++.|++++++||+||||++++.+.++||++|+||+||++||||++ +++||+|.|++.+.+.++... ...+++|+|
T Consensus 364 g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~~~~~~~~~~~~~~~~~L~r 443 (590)
T PLN02258 364 GGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNESDESLRSVLSE 443 (590)
T ss_pred CCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEEEecccChhhhcccccccccceEEE
Confidence 568999999999999999999765568999999999999999999974 367999999998766544332 356789999
Q ss_pred EEEeCCCCceEEEeecc---CCccccccCCCCCCCcCceEEEeeccCCCCCCeEEEEecCCCeEEEEEEcCCCccCCCcE
Q 046348 240 VRINLRTGHVFRNILST---RNLELGSINSSYIGKKNRYVFMGVGKEIPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPL 316 (358)
Q Consensus 240 ~~idl~~g~v~~~~L~~---~~~EfP~In~~~~gk~yry~y~~~~~~~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPv 316 (358)
||||+++|+++++.|.+ .++|||+||+++.||+|||+|+++.++...+++|+|+|+++|+ .+.||+|+++|+|||+
T Consensus 444 ~ridl~tg~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~tg~-~~~~~~g~g~~~gEPv 522 (590)
T PLN02258 444 IRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGE-VKKYIYGEGRYGGEPF 522 (590)
T ss_pred EEEECCCCceeeeEeecCCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEEEECCCCc-EEEEECCCCccccCCE
Confidence 99999999998887755 7999999999999999999999888777789999999999998 7899999999999999
Q ss_pred EeecCCCCCCCCCCCCeEEEEEEEeCCCCeeEEEEEeCCCCC
Q 046348 317 FVPRNEDHLEAADEDDGFVVTYIHDEIHEESKFLVMDAKSPI 358 (358)
Q Consensus 317 FVPrp~~~~~~~~EDDG~lls~v~d~~~~~s~l~ILDA~~l~ 358 (358)
||||++++ .+|||||||++|+|..+++|+|+||||++|+
T Consensus 523 FVPr~~~~---~~EDDGylls~V~d~~~~~SeL~IlDA~~l~ 561 (590)
T PLN02258 523 FVPRGSGS---EAEDDGYILAFVHDEEKGKSELQVVNAVNLE 561 (590)
T ss_pred eccCCCCC---cccCCcEEEEEEEECCCCceEEEEEeCCCCc
Confidence 99999642 3599999999999999999999999999984
No 2
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=4.6e-88 Score=685.39 Aligned_cols=352 Identities=33% Similarity=0.582 Sum_probs=314.9
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCcccCCCCcCcCceeeEEECCeEEEEecCCCCeEEecCCCCCceeeeecccccccccC
Q 046348 2 LSGIYGIADIIQCVAAVARVLMGHINLKKGFGLANTSLAFFSSKLLALGESDLPYIINSTREGDVETVGRWDFDEALFAS 81 (358)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~P~~ld~~~~~TLeT~g~~~~~~~l~~~ 81 (358)
+++++|+.|+++..+...|.+++..+....+|+|||||++|+||||||||+|.||++++.|++||||+|++||+|+|..+
T Consensus 143 ~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp~tLeT~G~~df~g~l~~~ 222 (545)
T PLN02491 143 IGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHS 222 (545)
T ss_pred cccccccchhhhhhhhhhhccccccccccCCCCCceeEEEECCEEEEEEcCCCCeEecCCCCCCcceeeecccCCccCcc
Confidence 57889999999999999998888776666689999999999999999999999999987445799999999999999989
Q ss_pred CCCCceeeCCCCcEEEEEecCCCCCcEEEEEEcCCCCeEEeEeeecCCCcceeeceecCCCEeEEEeCccccCHHHHHcC
Q 046348 82 MTAHPKTDMTTKETFAFKFSPVFSPHLTFFRFDANGIKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLG 161 (358)
Q Consensus 82 ~tAHP~~Dp~tg~~~~~g~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdf~~Teny~V~~~~P~~~~~~~~l~~ 161 (358)
||||||+||.||||++||++.. .++++|+++|++|++.+.+++ +++.++|||||+|||||+||+++|+.+++.+|+++
T Consensus 223 ~TAHPk~DP~TGel~~fgy~~~-~p~~~y~~~~~~G~~~~~v~i-~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~ 300 (545)
T PLN02491 223 FTAHPKVDPFTGEMFTFGYSHE-PPYITYRVISKDGAMHDPVPI-TISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKE 300 (545)
T ss_pred cccCccCcCCCCCEEEEEecCC-CCcEEEEEECCCCcCcceeEe-ecCCCceeeeeEecCCEEEEEECCcccCHHHHhhC
Confidence 9999999999999999999984 488999999999999988888 99999999999999999999999999999999877
Q ss_pred CCCCeeecCCCCcEEEEEeCCCCCCCceEEEEcCCeeeeeecceeecCCCeEEEEEeecCChhh-----hh-cccccccc
Q 046348 162 KGMPTVFVPEKIPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGDDEIVLMATTATSIEN-----LF-HKIDMVHF 235 (358)
Q Consensus 162 ~~~~~~w~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~NA~E~~~~~iv~D~~~~~~~~~-----~~-~~~~~~~~ 235 (358)
+..++.|+|++++||+||||++++.+.++||++|+||+||++||||++ ++||+|+|++++.+. .+ +......+
T Consensus 301 ~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~-~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (545)
T PLN02491 301 KKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVNGKVKEKLENFGN 379 (545)
T ss_pred CCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccC-CeEEEEEeccCCCccccccccccccccccCc
Confidence 778999999999999999998755568999999999999999999988 899999999987531 11 11223467
Q ss_pred eEEEEEEeCCCCceEEEeeccCCccccccCCCCCCCcCceEEEeeccCCCCCCeEEEEecCC----CeE--------EEE
Q 046348 236 SLEKVRINLRTGHVFRNILSTRNLELGSINSSYIGKKNRYVFMGVGKEIPKMEGVVKIDLEK----EIE--------VSR 303 (358)
Q Consensus 236 ~l~R~~idl~~g~v~~~~L~~~~~EfP~In~~~~gk~yry~y~~~~~~~~~~~~lvk~D~~~----g~~--------~~~ 303 (358)
+|+|||||+.+|+++++.|++.++|||+||+++.||+|||+|++..++...+++|+|+|+++ |+. +..
T Consensus 380 ~l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~ 459 (545)
T PLN02491 380 ELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGI 459 (545)
T ss_pred eEEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccceeEE
Confidence 89999999999999999999999999999999999999999999887666789999999985 431 247
Q ss_pred EEcCCCccCCCcEEeecCCCCCCCCCCCCeEEEEEEEeCCCCeeEEEEEeCCCCC
Q 046348 304 RFYGPSCFGGEPLFVPRNEDHLEAADEDDGFVVTYIHDEIHEESKFLVMDAKSPI 358 (358)
Q Consensus 304 ~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~lls~v~d~~~~~s~l~ILDA~~l~ 358 (358)
||+++++|+|||+||||+++. +.+|||||||++|+|..+++|+|+||||++|+
T Consensus 460 ~~~g~~~~~~EPvFVPr~~~~--~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~ 512 (545)
T PLN02491 460 FDLGPGRFGSEAIFVPREPGT--TSEEDDGYLIFFVHDENTGKSSVNVIDAKTMS 512 (545)
T ss_pred EEcCCCccccCCEEecCCCCC--CcccCCcEEEEEEEcCCCCcceEEEEeCCCCC
Confidence 899999999999999997431 15899999999999999999999999999985
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.6e-84 Score=618.44 Aligned_cols=317 Identities=32% Similarity=0.539 Sum_probs=285.9
Q ss_pred CCcCcCceeeEEECCeEEEEecCCCCeEEecCCCCCceeeeeccccc-ccccCCCCCceeeCCCCcEEEEEecCCCCCcE
Q 046348 30 KGFGLANTSLAFFSSKLLALGESDLPYIINSTREGDVETVGRWDFDE-ALFASMTAHPKTDMTTKETFAFKFSPVFSPHL 108 (358)
Q Consensus 30 ~~~~~aNt~v~~~~g~llAl~E~g~P~~ld~~~~~TLeT~g~~~~~~-~l~~~~tAHP~~Dp~tg~~~~~g~~~~~~~~~ 108 (358)
..+|.|||||+.|+++|+||||+|.||+|||+ ||+|+|..+|+| .+..+||||||+||.|||++|||+++.. +++
T Consensus 131 ~lkn~aNTsVi~~~~~LlalwEgG~pyrLdp~---tL~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~-~~l 206 (490)
T COG3670 131 DLKNAANTSVIMHGDELLALWEGGSPYRLDPD---TLETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFAL-PYL 206 (490)
T ss_pred ccccCCccceEeehhHHHHHHhcCCccccChh---HhhhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCC-Cee
Confidence 35999999999999999999999999999986 999999999998 4556799999999999999999999976 499
Q ss_pred EEEEEcCCCCeEEeEeeecCCCcceeeceecCCCEeEEEeCccccCHHHHHcC---CCCCeeecCCCCcEEEEEeCCCCC
Q 046348 109 TFFRFDANGIKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLG---KGMPTVFVPEKIPRIGIILKYATS 185 (358)
Q Consensus 109 ~~~~~d~~g~~~~~~~~~~~~~~~~iHdf~~Teny~V~~~~P~~~~~~~~l~~---~~~~~~w~~~~~t~~~vipR~~~~ 185 (358)
+|+++|++|++++.+.+ ++|+++|||||++|+||+||+++|+.+|+...+++ ...++.|+|+.||||+||||.+ +
T Consensus 207 ~~~~v~~~G~l~r~~~i-~lpg~~~~HDFa~T~~y~If~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~ 284 (490)
T COG3670 207 TYYVVDADGELRRTVDI-PLPGPPMMHDFAITENYLIFFDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D 284 (490)
T ss_pred EEEEECCCCcEEEeeee-ecCCCccceeeeecCceEEEEeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCC-C
Confidence 99999999999999999 99999999999999999999999999996443333 4679999999999999999986 3
Q ss_pred CCceEEEEcCCeeeeeecceeecCCCeEEEEEeecCChhhhhcc--------c-ccccceEEEEEEeCCCCceEEEeecc
Q 046348 186 DAEMKWFNVPGFNAMHVFNAWENGDDEIVLMATTATSIENLFHK--------I-DMVHFSLEKVRINLRTGHVFRNILST 256 (358)
Q Consensus 186 ~~~v~~~~~~~~~~fH~~NA~E~~~~~iv~D~~~~~~~~~~~~~--------~-~~~~~~l~R~~idl~~g~v~~~~L~~ 256 (358)
+++||||+|+||+||+.||||++|+.|.+|.|++++.....+. . ...+++|+||+|+|++|++..+.+.+
T Consensus 285 -~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~~~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~ 363 (490)
T COG3670 285 -SEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDFSQTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLDD 363 (490)
T ss_pred -CceeEEecCCeEEEEecceeecCCCcEEEEEEeecccccccccccccccccccccCCCcceEEEEccccchhHHHhhhh
Confidence 6899999999999999999999889999999999986422211 1 12368999999999999999999999
Q ss_pred CCccccccCCCCCCCcCceEEEeeccC-CCCCCe---EEEEecCCCeEEEEEEcCCCccCCCcEEeecCCCCCCCCCCCC
Q 046348 257 RNLELGSINSSYIGKKNRYVFMGVGKE-IPKMEG---VVKIDLEKEIEVSRRFYGPSCFGGEPLFVPRNEDHLEAADEDD 332 (358)
Q Consensus 257 ~~~EfP~In~~~~gk~yry~y~~~~~~-~~~~~~---lvk~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDD 332 (358)
+.+|||+||+++.|++|||.|++...+ ...+++ |+|+|++||+ .+.+.+++++|+|||+|||||++ ..|||
T Consensus 364 r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l~k~D~~tg~-~~~~~~g~~~y~~E~vfvPrpg~----~~EdD 438 (490)
T COG3670 364 RACEFPRINPRYVGQPYRYTYMSGARPGTFLFQGLQTLAKHDLETGT-SQVYSFGPRGYGSEPVFVPRPGS----SAEDD 438 (490)
T ss_pred hhcccCccChhhcCCceEEEEEecccCCccchhhcceeEEEeccCCc-EEEEecCCCCcccccccccCCCC----CcCCC
Confidence 999999999999999999999998774 334445 9999999999 89999999999999999999965 89999
Q ss_pred eEEEEEEEeCCCCeeEEEEEeCCCCC
Q 046348 333 GFVVTYIHDEIHEESKFLVMDAKSPI 358 (358)
Q Consensus 333 G~lls~v~d~~~~~s~l~ILDA~~l~ 358 (358)
||||++|||.+.++|+|+||||++++
T Consensus 439 GwLl~~vyd~~~~~Sel~v~DA~~~~ 464 (490)
T COG3670 439 GWLLTLVYDGDRHASELLVFDAQRVT 464 (490)
T ss_pred cEEEEEEEecCCCcceEEEEecccCC
Confidence 99999999999999999999999863
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=2.5e-80 Score=626.89 Aligned_cols=321 Identities=36% Similarity=0.567 Sum_probs=257.0
Q ss_pred CCCcCcCceeeEEECCeEEEEecCCCCeEEecCCCCCceeeeecccccccc-cCCCCCceeeCCCCcEEEEEecCCC--C
Q 046348 29 KKGFGLANTSLAFFSSKLLALGESDLPYIINSTREGDVETVGRWDFDEALF-ASMTAHPKTDMTTKETFAFKFSPVF--S 105 (358)
Q Consensus 29 ~~~~~~aNt~v~~~~g~llAl~E~g~P~~ld~~~~~TLeT~g~~~~~~~l~-~~~tAHP~~Dp~tg~~~~~g~~~~~--~ 105 (358)
...+|+|||||++|+||||||||+|.||+|||+ ||||+|.++|++.|+ ..||||||+||+||++|+|+++++. .
T Consensus 116 ~~~~~~aNt~v~~~~g~llAl~E~g~p~~lDp~---TLeT~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~ 192 (486)
T PF03055_consen 116 GKPKNNANTNVIPHGGRLLALWEGGPPYELDPD---TLETLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGS 192 (486)
T ss_dssp GGB-----SEEEEETTEEEEE-TTSEEEEEETT---TCEEEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTS
T ss_pred ccCCCCceeeeEEECCEEEEEEcCCCCEEechh---HhhhcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCC
Confidence 357999999999999999999999999999985 999999999999998 6799999999999999999999765 5
Q ss_pred CcEEEEEEcCCCCeEEeEeeecCCCcceeeceecCCCEeEEEeCccccCHHHHHcCCC--CCeeecCCCCcEEEEEeCCC
Q 046348 106 PHLTFFRFDANGIKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKG--MPTVFVPEKIPRIGIILKYA 183 (358)
Q Consensus 106 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdf~~Teny~V~~~~P~~~~~~~~l~~~~--~~~~w~~~~~t~~~vipR~~ 183 (358)
++++++++|++|++++.++.++++.++|||||+|||||+||+++|+.+++.+++++.. +++.|+|+++++|+||||++
T Consensus 193 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~vT~~Y~V~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~ 272 (486)
T PF03055_consen 193 PKLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFAVTENYVVFPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDG 272 (486)
T ss_dssp EEEEEEEE-TTSEEEEEEEESCCCS-B-----EE-SSEEEEEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTT
T ss_pred CcEEEEEEcCccceeEEeeeccCCCCcccccccccCceEEEEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcC
Confidence 8999999999998777777668999999999999999999999999999999985542 79999999999999999997
Q ss_pred CCCCceEEEEcCCeeeeeecceeecCCC--eEEEEEeecCChhhhhc----c--------cccccceEEEEEEeCC--CC
Q 046348 184 TSDAEMKWFNVPGFNAMHVFNAWENGDD--EIVLMATTATSIENLFH----K--------IDMVHFSLEKVRINLR--TG 247 (358)
Q Consensus 184 ~~~~~v~~~~~~~~~~fH~~NA~E~~~~--~iv~D~~~~~~~~~~~~----~--------~~~~~~~l~R~~idl~--~g 247 (358)
++ ..++||++|+||+||++||||++|+ +|++|+|+|++...+.. . .....++|+||+||+. ++
T Consensus 273 ~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~ 351 (486)
T PF03055_consen 273 GK-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYDDPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTG 351 (486)
T ss_dssp SC-CCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEECSSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TC
T ss_pred CC-ceeEEEecCChhhccccceeecCCCceEEEEEEeecCCcccccccchhcccccccccccCCCceEEEEEEccccccc
Confidence 54 6799999999999999999999853 99999999998653321 1 1346789999999999 88
Q ss_pred ceEEEeeccC-CccccccCCCCCCCcCceEEEeeccC----CCCCCeEEEEecCCCeEEEEEEcCCCccCCCcEEeecCC
Q 046348 248 HVFRNILSTR-NLELGSINSSYIGKKNRYVFMGVGKE----IPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPLFVPRNE 322 (358)
Q Consensus 248 ~v~~~~L~~~-~~EfP~In~~~~gk~yry~y~~~~~~----~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~ 322 (358)
+++++.|++. ++|||+||+++.||+|||+|+++... ..++++|+|+|+++|+ ...|+++++++++||+|||||+
T Consensus 352 ~~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~~~~~l~k~D~~tg~-~~~~~~~~~~~~~EpvFVPr~~ 430 (486)
T PF03055_consen 352 RVSEEPLDDGNPCEFPRINPRYSGRPYRYVYAVGMDPERSPGFPFNGLVKVDLETGE-VQRWSFGPGCFPGEPVFVPRPG 430 (486)
T ss_dssp EEEEEEEETTEEEEEEEE-GGGTTS--SEEEEEEECSCTS---EEEEEEEEETTTTE-EEEEE-TTTEEE--EEEEE-TT
T ss_pred eeEHhHhccCCCcccceeCcccCCCcccEEEEEeecccCCcCcCCCEEEEEeccccc-ceEEECCCCceecceEeccCCC
Confidence 8988999987 69999999999999999999876552 3568999999999999 8899999999999999999996
Q ss_pred CCCCCCCCCCeEEEEEEEeCCCCeeEEEEEeCCCCC
Q 046348 323 DHLEAADEDDGFVVTYIHDEIHEESKFLVMDAKSPI 358 (358)
Q Consensus 323 ~~~~~~~EDDG~lls~v~d~~~~~s~l~ILDA~~l~ 358 (358)
+ .+|||||||++|+|.+.++|+|+||||++|+
T Consensus 431 ~----~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~ 462 (486)
T PF03055_consen 431 G----AEEDDGYLLSVVYDSDTNRSELLVLDAKDLE 462 (486)
T ss_dssp S-----STT-EEEEEEEEETTTTCEEEEEEETTTTC
T ss_pred C----CCCCceEEEEEEEECCCCccEEEEEeCCCCC
Confidence 4 7999999999999999999999999999985
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=5.1e-76 Score=604.83 Aligned_cols=320 Identities=25% Similarity=0.377 Sum_probs=270.9
Q ss_pred CcCcCceeeEEECCeEEEEecCCCCeEEecCCCCCceeeeeccc-----------------------------ccccc--
Q 046348 31 GFGLANTSLAFFSSKLLALGESDLPYIINSTREGDVETVGRWDF-----------------------------DEALF-- 79 (358)
Q Consensus 31 ~~~~aNt~v~~~~g~llAl~E~g~P~~ld~~~~~TLeT~g~~~~-----------------------------~~~l~-- 79 (358)
.+|+|||||++|+||||||||+|.||+|||+ ||||+|+++| .|.+.
T Consensus 176 ~kn~ANT~V~~~gg~LlAl~E~g~P~~lDP~---TLeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p 252 (610)
T PLN02969 176 MKNVANTSVLKWGGRLLCLWEGGEPYEIDSG---TLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMP 252 (610)
T ss_pred cccCCCcceeeeCCEEEEecCCCCCeEcCcC---ccceeecccccccccccccccccccccccccccccccccccccccC
Confidence 4899999999999999999999999999875 9999999999 33332
Q ss_pred -cCCCCCceeeCCCCcEEEEEecC----CCCCcEEEEEEcCCCCeEEeEeeecCCCcceeeceecCCCEeEEEeCccccC
Q 046348 80 -ASMTAHPKTDMTTKETFAFKFSP----VFSPHLTFFRFDANGIKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVS 154 (358)
Q Consensus 80 -~~~tAHP~~Dp~tg~~~~~g~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdf~~Teny~V~~~~P~~~~ 154 (358)
..||||||+||.||++++|+++. ...+.+++|++|++|++.+++++ ++|.++|||||+|||||+||+++|+++|
T Consensus 253 ~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~y~~d~~G~~~~~~~~-~~p~~~~iHDfaiTeny~Vf~~~P~~~d 331 (610)
T PLN02969 253 KKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYEFDADFKLVQRKEF-KLDDHLMIHDWAFTDTHYVLLANRVKLD 331 (610)
T ss_pred CccccccCCcCCCCCCEEEEEeccccccCCCceeEEEEECCCCCEecceee-cCCCcceeeeeeccCCEEEEEECceecC
Confidence 36899999999999999999986 24578999999999999999888 9999999999999999999999999999
Q ss_pred HHHHHc--CC----CCCeeecCCCCc-EEEEEeCCCCCC-CceEE---EEcC-CeeeeeecceeecC--CC--eEEEEEe
Q 046348 155 AANVML--GK----GMPTVFVPEKIP-RIGIILKYATSD-AEMKW---FNVP-GFNAMHVFNAWENG--DD--EIVLMAT 218 (358)
Q Consensus 155 ~~~~l~--~~----~~~~~w~~~~~t-~~~vipR~~~~~-~~v~~---~~~~-~~~~fH~~NA~E~~--~~--~iv~D~~ 218 (358)
+.+++. .+ .++|.|+|++++ +|+||||++++. ..++| +++| +||+||++||||++ +| +|++|+|
T Consensus 332 ~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~ 411 (610)
T PLN02969 332 VPGSLLAMAGLSPMISALAVDPSRPSSPVYLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHAS 411 (610)
T ss_pred HHHHHHHhhcCCCchheeEECCCCCccEEEEEECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEe
Confidence 987552 22 257999999995 899999997543 57889 9998 59999999999974 24 5999997
Q ss_pred e--cCChhhh------hc--c----------cccccceEEEEEEeCC-CCce---EEEeec---cCCccccccCCCCCCC
Q 046348 219 T--ATSIENL------FH--K----------IDMVHFSLEKVRINLR-TGHV---FRNILS---TRNLELGSINSSYIGK 271 (358)
Q Consensus 219 ~--~~~~~~~------~~--~----------~~~~~~~l~R~~idl~-~g~v---~~~~L~---~~~~EfP~In~~~~gk 271 (358)
+ |++...+ +. . .....++|+||+||+. +|++ +.+.|. +.++|||+||+++.||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr 491 (610)
T PLN02969 412 ACSYQWFSFHRMFGYDWQNKKLDPSVMNNAKGKELLPHLVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQ 491 (610)
T ss_pred ccccccccccccccccccccccCcchhcccCcccccceEEEEEEeCCcCCccccccceeeccccccccccCccChhHCCC
Confidence 4 6543311 00 0 0113468999999996 6765 447775 6799999999999999
Q ss_pred cCceEEEeeccC------CCCCCeEEEEecCCCeEEEEEEcCCCccCCCcEEeecCC--CCCCCCCCCCeEEEEEEEeCC
Q 046348 272 KNRYVFMGVGKE------IPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPLFVPRNE--DHLEAADEDDGFVVTYIHDEI 343 (358)
Q Consensus 272 ~yry~y~~~~~~------~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~--~~~~~~~EDDG~lls~v~d~~ 343 (358)
+|||+|+++.++ ..++++|+|+|+++|+ .+.|++++++++||||||||++ ++ ++|||||||++|+|..
T Consensus 492 ~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~tg~-~~~w~~g~~~~~~EPvFVPr~~~p~~---~~EDDG~Ll~~v~d~~ 567 (610)
T PLN02969 492 KNEYTYAAAASGSRKTLPHFPFDSVVKLDVPDGS-ARSWSTGARRFVGEPVFVPRKSSQGG---GEEDDGYVLVVEYAVS 567 (610)
T ss_pred cceEEEEeeecCCCcccccCCcCeEEEEECCCCC-EEEEEeCCCCcccCCEEecCCCCCCC---CccCCcEEEEEEEECC
Confidence 999999987652 2368999999999998 7888889999999999999952 23 7899999999999999
Q ss_pred CCeeEEEEEeCCCCC
Q 046348 344 HEESKFLVMDAKSPI 358 (358)
Q Consensus 344 ~~~s~l~ILDA~~l~ 358 (358)
.++|+|+||||++|+
T Consensus 568 ~~~S~LvILDAk~~~ 582 (610)
T PLN02969 568 DERCYLVILDAKRIG 582 (610)
T ss_pred CCceEEEEEeCCCCc
Confidence 999999999999985
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-46 Score=378.33 Aligned_cols=350 Identities=35% Similarity=0.529 Sum_probs=307.7
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCcccCCCCcCcCceeeEEECCeEEEEecCCCCeEEecCCCCCcee-eeeccccccccc
Q 046348 2 LSGIYGIADIIQCVAAVARVLMGHINLKKGFGLANTSLAFFSSKLLALGESDLPYIINSTREGDVET-VGRWDFDEALFA 80 (358)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~P~~ld~~~~~TLeT-~g~~~~~~~l~~ 80 (358)
.|+++|++|.+++.+..+|.+.++.++......+|+..++..++++|+.|.++||..-....+.+|| ++..+|..+|..
T Consensus 199 ~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~ 278 (582)
T KOG1285|consen 199 IGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNL 278 (582)
T ss_pred cccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccch
Confidence 5999999999999999999999999999999999999999999999999999888777766778999 999999999999
Q ss_pred CCCCCceeeCCCCcEEEEEecCCCCCcEEEEEEcCCCCeEEeEeeecCCCcceeeceecCCCEeEEEeCccccCHHHHHc
Q 046348 81 SMTAHPKTDMTTKETFAFKFSPVFSPHLTFFRFDANGIKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVML 160 (358)
Q Consensus 81 ~~tAHP~~Dp~tg~~~~~g~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdf~~Teny~V~~~~P~~~~~~~~l~ 160 (358)
.+.|||++||.+|+++...++....+++.|.++++.|.......+ ....+.|+|+||+|||+.|+++.++..++..+..
T Consensus 279 ~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~-~~~~~t~hh~na~eedg~vi~D~~~~~~~~~~~~ 357 (582)
T KOG1285|consen 279 SKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEI-FPSFPTFHHDNAFEEDGCVVPDLCVYFDLSEMIR 357 (582)
T ss_pred hhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCccee-ccCcceEEEeeeecccCceEEEEEEEechhhhhc
Confidence 999999999999999999999987789999999999888776666 4448999999999999999999999999987774
Q ss_pred CCCCCeeecCCCCcEEEEEeCCCCCCCceEEEEcCCeeeeeecceeecCCC--eEEEEEeecCChhhhhc-ccccccceE
Q 046348 161 GKGMPTVFVPEKIPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGDD--EIVLMATTATSIENLFH-KIDMVHFSL 237 (358)
Q Consensus 161 ~~~~~~~w~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~NA~E~~~~--~iv~D~~~~~~~~~~~~-~~~~~~~~l 237 (358)
... ++..+..+..|+.+.++...+...++|...+.+++||..|+||+... .++|--.+......++. ..+....++
T Consensus 358 ~~~-p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~~~de~~~~~l 436 (582)
T KOG1285|consen 358 DTS-PLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFRESDELLGNRL 436 (582)
T ss_pred ccc-eeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCceEEeecccCCccchhhcccccchhcee
Confidence 444 78899999999999999887788999999999999999999997422 44444444444444433 345567889
Q ss_pred EEEEEeCCCCceEEEeecc-CCccccccCCCCCCCcCceEEEeeccCCCCCCeEEEEecCCCeEEEEEEcCCCccCCCcE
Q 046348 238 EKVRINLRTGHVFRNILST-RNLELGSINSSYIGKKNRYVFMGVGKEIPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPL 316 (358)
Q Consensus 238 ~R~~idl~~g~v~~~~L~~-~~~EfP~In~~~~gk~yry~y~~~~~~~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPv 316 (358)
...++.+.+|...++.+.. .++|+++||..+.||+|||+|++..++++.+++++|+|+.+|+ +.+|..+.+++.|||+
T Consensus 437 ~e~r~~~~tg~~~~~~~~~~~nl~~~~in~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~g~-~~~w~~~~~~~~GEP~ 515 (582)
T KOG1285|consen 437 EEIRLNLKTGLEFPRPVIPKINLDFGMINRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVTGE-VKKWREGGGRPGGEPI 515 (582)
T ss_pred eeeeecccccccccceeecccccccccccceeecccceEEEEEecCCccCCCeEEEEEecCCc-eeeEecCCCccCCCce
Confidence 9999999998776655543 5999999999999999999999999998899999999999998 7888888888888999
Q ss_pred EeecCCCCCCCCCCCCeEEEEEEEeCCCCeeEEEEEeCCCCC
Q 046348 317 FVPRNEDHLEAADEDDGFVVTYIHDEIHEESKFLVMDAKSPI 358 (358)
Q Consensus 317 FVPrp~~~~~~~~EDDG~lls~v~d~~~~~s~l~ILDA~~l~ 358 (358)
|||+|+. .+||||||+++|++....+|+|+||||++|+
T Consensus 516 FVP~p~~----~eEDdG~Iv~~v~~~~~~~s~l~ildAK~l~ 553 (582)
T KOG1285|consen 516 FVPRPGT----LEEDDGYIVSVVHDESKEKSFLLILDAKTLE 553 (582)
T ss_pred EecCCCC----cccCCcEEEEEEEcCCCCcccEEEEeccccc
Confidence 9999943 8999999999999999999999999999974
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=1.8e-20 Score=189.52 Aligned_cols=244 Identities=17% Similarity=0.157 Sum_probs=165.2
Q ss_pred CCCCcCcCceeeEEE-CCeEEEEecCCCCeEEecCCCCCceeeeeccccc-ccc-cCCCCCceeeCCCCcEEE-EEec-C
Q 046348 28 LKKGFGLANTSLAFF-SSKLLALGESDLPYIINSTREGDVETVGRWDFDE-ALF-ASMTAHPKTDMTTKETFA-FKFS-P 102 (358)
Q Consensus 28 ~~~~~~~aNt~v~~~-~g~llAl~E~g~P~~ld~~~~~TLeT~g~~~~~~-~l~-~~~tAHP~~Dp~tg~~~~-~g~~-~ 102 (358)
+...+|+||+++... |+++||.+|.-.-+++|+ +||+|+..++|.+ .+. ..++|||+.|+. |++++ +|.. +
T Consensus 136 g~~~rd~aN~~f~pv~g~~~~~gtet~~~~ki~~---~tl~t~~~~~~~k~~v~~~~~gah~~~d~~-G~~~g~~g~~~~ 211 (582)
T KOG1285|consen 136 GESIRDNANPNFTPVGGHHLYAGTETPHAVKIDP---GTLETTYKVRFTKTLVQEHTAGAHPHPDEI-GTVYGHFGIARF 211 (582)
T ss_pred ccccccCCCcceeecCCCeeEecCCCceeEEecC---cccceeEeeccccceeeeeecccCCcccCc-ccEEeeechhhc
Confidence 456799999999999 889999999954444443 5999999999999 444 357899999986 99999 6665 3
Q ss_pred CC--CCcEEEEEEcCCCCeE----------EeEe--eecCCCcceeeceecCCCEeEEEeCccccCHHHHHcCC------
Q 046348 103 VF--SPHLTFFRFDANGIKQ----------KDVP--ILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGK------ 162 (358)
Q Consensus 103 ~~--~~~~~~~~~d~~g~~~----------~~~~--~~~~~~~~~iHdf~~Teny~V~~~~P~~~~~~~~l~~~------ 162 (358)
.. ...++.....+.|.-. +... .-+++.+.|||+|++||||+|++++|+++++.+++...
T Consensus 212 ~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g 291 (582)
T KOG1285|consen 212 GLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTG 291 (582)
T ss_pred cccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCccccccc
Confidence 22 1233343443322110 1111 12567899999999999999999999999998887422
Q ss_pred ---CCCeeecCCCCcEEEEEeCCCCCCCceEEEEcCCeeeeeecceeecCCCeEEEEEeecCChhhhhc-c--cccccce
Q 046348 163 ---GMPTVFVPEKIPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGDDEIVLMATTATSIENLFH-K--IDMVHFS 236 (358)
Q Consensus 163 ---~~~~~w~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~NA~E~~~~~iv~D~~~~~~~~~~~~-~--~~~~~~~ 236 (358)
..++.|.|....+++++.+++++..+++. .+++++|||+||||++ +.|++|.|++.+...+.. . .-....+
T Consensus 292 ~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~--~~~~~t~hh~na~eed-g~vi~D~~~~~~~~~~~~~~~p~~~~~~k 368 (582)
T KOG1285|consen 292 EWFADFYDWVPKPYLIYHKFSKEGGKSVPVEI--FPSFPTFHHDNAFEED-GCVVPDLCVYFDLSEMIRDTSPLLYDNGK 368 (582)
T ss_pred chhhhhhcccCCCcEEEEEeccccCccCccee--ccCcceEEEeeeeccc-CceEEEEEEEechhhhhcccceeeccccc
Confidence 34679999999999999998765444432 3459999999999999 999999999988662211 1 1122344
Q ss_pred EEEEEEeCCCCceEEE---eeccCCccccccCCCCCCCcCceEEEe
Q 046348 237 LEKVRINLRTGHVFRN---ILSTRNLELGSINSSYIGKKNRYVFMG 279 (358)
Q Consensus 237 l~R~~idl~~g~v~~~---~L~~~~~EfP~In~~~~gk~yry~y~~ 279 (358)
.-|+.++.++.....+ .+.-..+-|| ...++.-++|.+.+.+
T Consensus 369 ~~rfg~~~k~~~d~~~~~~p~~~~~~~~~-~~~~~e~~~~~~~~~v 413 (582)
T KOG1285|consen 369 TLRFGLLSKTAPDARRIVWPLSPSKFAFH-LWNNWEKKPYDWEVVV 413 (582)
T ss_pred ccccccccccCCcccceEEEecccccccc-chhhhcccCCCceEEe
Confidence 5555555544322111 1222234555 3333333566554443
No 8
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=58.22 E-value=88 Score=30.15 Aligned_cols=99 Identities=15% Similarity=0.238 Sum_probs=60.3
Q ss_pred ECCeEEEEecCC----C--CeEEecCCCCCceeeeecccccccccCCCCCceeeCCCCcEEEEEecCCCCCcEEEEEEcC
Q 046348 42 FSSKLLALGESD----L--PYIINSTREGDVETVGRWDFDEALFASMTAHPKTDMTTKETFAFKFSPVFSPHLTFFRFDA 115 (358)
Q Consensus 42 ~~g~llAl~E~g----~--P~~ld~~~~~TLeT~g~~~~~~~l~~~~tAHP~~Dp~tg~~~~~g~~~~~~~~~~~~~~d~ 115 (358)
-+..|||..|.+ . -|.++.+ ..+|+-++...-.| .-..|-.+||+...++.-.|. ...+.++.++.
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~-~g~L~~~~~~~~~g----~~p~~i~~~~~g~~l~vany~---~g~v~v~~l~~ 118 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPD-TGTLTLLNSVPSGG----SSPCHIAVDPDGRFLYVANYG---GGSVSVFPLDD 118 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETT-TTEEEEEEEEEESS----SCEEEEEECTTSSEEEEEETT---TTEEEEEEECT
T ss_pred CCCEEEEEEccccCCCCEEEEEECCC-cceeEEeeeeccCC----CCcEEEEEecCCCEEEEEEcc---CCeEEEEEccC
Confidence 356799999963 2 3444432 14677776654333 234578889874445544443 26689999999
Q ss_pred CCCeEEeEeeec---------CCCcceeeceecCC--CEeEEEe
Q 046348 116 NGIKQKDVPILS---------INRPTFIHDFAITK--RFAIFSE 148 (358)
Q Consensus 116 ~g~~~~~~~~~~---------~~~~~~iHdf~~Te--ny~V~~~ 148 (358)
+|++......+. ....+..|...+++ +|+++++
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 998865532211 12457889998884 4766654
No 9
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.94 E-value=24 Score=32.13 Aligned_cols=37 Identities=11% Similarity=0.404 Sum_probs=29.9
Q ss_pred eeEEECCeEEEEe-cCCCCeEEecCCCCCceeeeecccccc
Q 046348 38 SLAFFSSKLLALG-ESDLPYIINSTREGDVETVGRWDFDEA 77 (358)
Q Consensus 38 ~v~~~~g~llAl~-E~g~P~~ld~~~~~TLeT~g~~~~~~~ 77 (358)
.+..+++.+|+|+ --|..|..|++ ||+++|++.|.|+
T Consensus 95 Git~~gd~~y~LTw~egvaf~~d~~---t~~~lg~~~y~Ge 132 (262)
T COG3823 95 GITKLGDYFYQLTWKEGVAFKYDAD---TLEELGRFSYEGE 132 (262)
T ss_pred ceeeccceEEEEEeccceeEEEChH---HhhhhcccccCCc
Confidence 4566889999876 45678888876 9999999999874
No 10
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=36.44 E-value=1.2e+02 Score=29.78 Aligned_cols=67 Identities=22% Similarity=0.274 Sum_probs=41.3
Q ss_pred CCcCceEEEeeccCCCCCCeEEEEecCCCeEEEEEEcCCCccCCCcEEeecCCCCCCCCCCCCeEEEEEEEeCCCCeeEE
Q 046348 270 GKKNRYVFMGVGKEIPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPLFVPRNEDHLEAADEDDGFVVTYIHDEIHEESKF 349 (358)
Q Consensus 270 gk~yry~y~~~~~~~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~lls~v~d~~~~~s~l 349 (358)
...-||+|.++.+ ..|.++|+.+++.+.....+ .+|.=|.= ..|.-||++.-+.. ..+
T Consensus 45 s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~G-----~~~~~i~~--------s~DG~~~~v~n~~~----~~v 102 (369)
T PF02239_consen 45 SPDGRYLYVANRD-----GTVSVIDLATGKVVATIKVG-----GNPRGIAV--------SPDGKYVYVANYEP----GTV 102 (369)
T ss_dssp TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-S-----SEEEEEEE----------TTTEEEEEEEET----TEE
T ss_pred cCCCCEEEEEcCC-----CeEEEEECCcccEEEEEecC-----CCcceEEE--------cCCCCEEEEEecCC----Cce
Confidence 3446899987532 37999999999865555433 33433332 23556887777654 378
Q ss_pred EEEeCCCCC
Q 046348 350 LVMDAKSPI 358 (358)
Q Consensus 350 ~ILDA~~l~ 358 (358)
.|+|+++|+
T Consensus 103 ~v~D~~tle 111 (369)
T PF02239_consen 103 SVIDAETLE 111 (369)
T ss_dssp EEEETTT--
T ss_pred eEecccccc
Confidence 899999874
No 11
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=32.99 E-value=98 Score=30.79 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=36.5
Q ss_pred cCceeeEEECCeEEEEecCCCCeEEecCCCCCcee-eeecccccccccCCCCCceeeCCCCcEEEEEecCCCCCcEEEEE
Q 046348 34 LANTSLAFFSSKLLALGESDLPYIINSTREGDVET-VGRWDFDEALFASMTAHPKTDMTTKETFAFKFSPVFSPHLTFFR 112 (358)
Q Consensus 34 ~aNt~v~~~~g~llAl~E~g~P~~ld~~~~~TLeT-~g~~~~~~~l~~~~tAHP~~Dp~tg~~~~~g~~~~~~~~~~~~~ 112 (358)
.+-|..-.+..|.+|||+.- .|+. ++..+++.. .+ ---|-+||+|+-+|-+|= +-..++||+
T Consensus 230 i~tTGfsr~seRq~aLwdp~-----------nl~eP~~~~elDtS-nG--vl~PFyD~dt~ivYl~GK---GD~~IRYyE 292 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPN-----------NLEEPIALQELDTS-NG--VLLPFYDPDTSIVYLCGK---GDSSIRYFE 292 (472)
T ss_pred eeeeccccccccceeccCcc-----------cccCcceeEEeccC-Cc--eEEeeecCCCCEEEEEec---CCcceEEEE
Confidence 45555556667888888532 2222 233333221 00 012778999988887774 235678888
Q ss_pred EcC
Q 046348 113 FDA 115 (358)
Q Consensus 113 ~d~ 115 (358)
+..
T Consensus 293 it~ 295 (472)
T KOG0303|consen 293 ITN 295 (472)
T ss_pred ecC
Confidence 644
No 12
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=30.70 E-value=54 Score=21.44 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=20.0
Q ss_pred cEEeecCCCCCCCCCCCCeEEEEEEEeCCCCeeEEEEEe
Q 046348 315 PLFVPRNEDHLEAADEDDGFVVTYIHDEIHEESKFLVMD 353 (358)
Q Consensus 315 PvFVPrp~~~~~~~~EDDG~lls~v~d~~~~~s~l~ILD 353 (358)
-++||.+ .+||+.+-+.+...+.-.+-..|
T Consensus 3 ~vWvpD~---------~egfv~g~I~~~~g~~vtV~~~~ 32 (42)
T PF02736_consen 3 WVWVPDP---------KEGFVKGEIIEEEGDKVTVKTED 32 (42)
T ss_dssp EEEEEES---------SSSEEEEEEEEEESSEEEEEETT
T ss_pred EEEEeCC---------cccEEEEEEEEEcCCEEEEEECC
Confidence 3688876 34999999997665554443333
No 13
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=30.66 E-value=68 Score=28.10 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=35.5
Q ss_pred EEcCCCccCCCcEEeecCCCCCCCCCCCCeEEEEEEEeCCCCeeEEEEEeCCCCC
Q 046348 304 RFYGPSCFGGEPLFVPRNEDHLEAADEDDGFVVTYIHDEIHEESKFLVMDAKSPI 358 (358)
Q Consensus 304 ~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~lls~v~d~~~~~s~l~ILDA~~l~ 358 (358)
+..+-|+..++|.+.+.. +=+++-+.+.+.+...+++.++++|+.+|.
T Consensus 39 ~~~~~G~~~~~~~~~~~~-------~lg~~gi~~~~v~~~g~~~~lv~~DsNNm~ 86 (179)
T PF09843_consen 39 YPLEVGYAEAEPFLGEHE-------GLGIGGISALVVEVGGQRSALVLADSNNME 86 (179)
T ss_pred cccccceEeccCCCCCCC-------CcCccccEEEEEEeCCcEEEEEEEECCCCC
Confidence 445566666677644332 346788888899988899999999999884
No 14
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=28.70 E-value=64 Score=20.34 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=19.2
Q ss_pred cCceeeEEECCeEEEEecCCCCeEEecC
Q 046348 34 LANTSLAFFSSKLLALGESDLPYIINST 61 (358)
Q Consensus 34 ~aNt~v~~~~g~llAl~E~g~P~~ld~~ 61 (358)
..+.+++..+|++|+.++.|.-|.||+.
T Consensus 12 ~~~~~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 12 PIWSSPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp ---S--EECTSEEEEE-TTSEEEEEETT
T ss_pred CcCcCCEEECCEEEEEcCCCEEEEEeCC
Confidence 3456678889999999999999999863
No 15
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=23.02 E-value=7.6e+02 Score=25.56 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=44.2
Q ss_pred CceeeEEECCeEEEEe--cCCCCeEEecCCCCCceeeeecccccccccCCCC--CceeeCCCCcEEEEEecCCC
Q 046348 35 ANTSLAFFSSKLLALG--ESDLPYIINSTREGDVETVGRWDFDEALFASMTA--HPKTDMTTKETFAFKFSPVF 104 (358)
Q Consensus 35 aNt~v~~~~g~llAl~--E~g~P~~ld~~~~~TLeT~g~~~~~~~l~~~~tA--HP~~Dp~tg~~~~~g~~~~~ 104 (358)
.-.++=+.|+|.|..| ...+-|.+|..+|..-+-+|+....| ||. ||- | .+.|++||.+...
T Consensus 327 ~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPG-----fS~YLHP~-~--e~~LlGiG~~~~~ 392 (521)
T PF09826_consen 327 RIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPG-----FSDYLHPY-D--ENHLLGIGKDTDE 392 (521)
T ss_pred eEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECcc-----chhceeEC-C--CCeEEEEcccCcc
Confidence 3345666788877665 56778888888777777777766543 666 777 3 4799999988754
No 16
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=22.49 E-value=2.1e+02 Score=21.37 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=26.9
Q ss_pred CCcEEEEEecCCCCCcEEEEEEcCCCCeEEeEe
Q 046348 92 TKETFAFKFSPVFSPHLTFFRFDANGIKQKDVP 124 (358)
Q Consensus 92 tg~~~~~g~~~~~~~~~~~~~~d~~g~~~~~~~ 124 (358)
.||-+.|.+...+..++.++-+|++|++...-+
T Consensus 5 ~Ge~v~~~~~~~~~~Yl~l~~~~~~G~v~~L~P 37 (83)
T PF14326_consen 5 VGERVRFRVTSNRDGYLYLFYIDADGKVTLLFP 37 (83)
T ss_pred CCCEEEEEEEeCCCeEEEEEEECCCCCEEEEec
Confidence 588899998887778999999999998864433
No 17
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=22.47 E-value=2e+02 Score=17.88 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=14.5
Q ss_pred CeEEEEecCCCeEEEEEEcC
Q 046348 288 EGVVKIDLEKEIEVSRRFYG 307 (358)
Q Consensus 288 ~~lvk~D~~~g~~~~~~~~~ 307 (358)
..|+-+|.+||+..+++..+
T Consensus 10 g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp SEEEEEETTTTSEEEEEESS
T ss_pred CEEEEEECCCCCEEEeeeCC
Confidence 57999999999854444433
No 18
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=20.61 E-value=3.2e+02 Score=28.09 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=38.4
Q ss_pred EEEe-eccCCCCCCeEEEEecCCCeEEEEEEcCCCccCCCcEEeecCCCCCCCCCCCCeEEEEEEEeCCCCeeEEEEEeC
Q 046348 276 VFMG-VGKEIPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPLFVPRNEDHLEAADEDDGFVVTYIHDEIHEESKFLVMDA 354 (358)
Q Consensus 276 ~y~~-~~~~~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~lls~v~d~~~~~s~l~ILDA 354 (358)
+|+. ..++....+.|+++|..+|.. ....+-...++-.+. +++ |+ ++++........=.||-||+
T Consensus 362 ~f~Lkv~d~~~~ls~LvllD~~tg~~--l~~S~~~~Ir~r~~~-~~~---------~~--~vaI~g~~G~~~ikLvlid~ 427 (489)
T PF05262_consen 362 VFGLKVLDPNHYLSELVLLDSDTGDT--LKRSPVNGIRGRTFY-ERE---------DD--LVAIAGCSGNAAIKLVLIDP 427 (489)
T ss_pred eeEEEEecCCCcceeEEEEeCCCCce--ecccccceeccceeE-EcC---------CC--EEEEeccCCchheEEEecCc
Confidence 5533 234656779999999999972 222233345554443 444 22 44444333333335566699
Q ss_pred CCCC
Q 046348 355 KSPI 358 (358)
Q Consensus 355 ~~l~ 358 (358)
.+|+
T Consensus 428 ~tLe 431 (489)
T PF05262_consen 428 ETLE 431 (489)
T ss_pred ccce
Confidence 9874
Done!