Query 046348
Match_columns 358
No_of_seqs 142 out of 1016
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 5E-90 1.7E-94 699.1 41.0 354 2-358 140-499 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 3E-84 1E-88 653.0 38.4 315 31-358 130-466 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 2.1E-79 7.3E-84 623.4 34.1 320 26-358 123-511 (533)
4 4guc_A Protein BA_2500; virule 37.3 1.4E+02 0.0047 23.4 7.4 47 91-146 35-87 (120)
5 2xzh_A Clathrin heavy chain 1; 20.4 1.4E+02 0.0047 28.1 5.5 54 256-321 256-309 (365)
6 2xpn_B SPT6, chromatin structu 14.7 57 0.0019 18.1 0.8 11 269-279 11-21 (26)
7 3nol_A Glutamine cyclotransfer 14.4 4E+02 0.014 23.6 7.0 67 30-99 167-243 (262)
8 1qks_A Cytochrome CD1 nitrite 14.2 8.5E+02 0.029 23.7 12.6 97 238-358 178-277 (567)
9 1bpo_A Protein (clathrin); cla 14.2 3.1E+02 0.011 26.8 6.4 54 256-321 255-308 (494)
10 1kb0_A Quinohemoprotein alcoho 11.6 6.7E+02 0.023 25.0 8.6 34 287-320 282-320 (677)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=5e-90 Score=699.12 Aligned_cols=354 Identities=35% Similarity=0.654 Sum_probs=320.1
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCcccCCCCcCcCceeeEEECCeEEEEecCCCCeEEecCCCCCceeeeecccccccccC
Q 046348 2 LSGIYGIADIIQCVAAVARVLMGHINLKKGFGLANTSLAFFSSKLLALGESDLPYIINSTREGDVETVGRWDFDEALFAS 81 (358)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~P~~ld~~~~~TLeT~g~~~~~~~l~~~ 81 (358)
+|+++|.+++++..+...|.++|+++..+.+|+|||||++|+||||||||+|.||++++||+.||||+|.+||+|+|+..
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~ 219 (529)
T 3npe_A 140 IGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCA 219 (529)
T ss_dssp TTTTTSSTHHHHHHHHHHHHHTTSCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSC
T ss_pred cccccccchhhhhhhhhhhcccccccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCc
Confidence 57888999999999999999999998888899999999999999999999999999977654599999999999999999
Q ss_pred CCCCceeeCCCCcEEEEEecCCCCCcEEEEEEcCCCCeEEeEeeecCCCcceeeceecCCCEeEEEeCccccCHHHHHcC
Q 046348 82 MTAHPKTDMTTKETFAFKFSPVFSPHLTFFRFDANGIKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLG 161 (358)
Q Consensus 82 ~tAHP~~Dp~tg~~~~~g~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdf~~Teny~V~~~~P~~~~~~~~l~~ 161 (358)
||||||+||.|||+++|+|+..+.+++++++++++|++.+.+++ +++.++|||||+|||||+||+++|+.+|+.+|+ .
T Consensus 220 ~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~~~i-~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~-~ 297 (529)
T 3npe_A 220 MIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEI-PLEQPTMIHDFAITENLVVVPDHQVVFKLQEML-R 297 (529)
T ss_dssp CCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCCEEC-CCSSCBCCCCCEECSSEEEEEECSEEECGGGGT-T
T ss_pred ccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEEEEE-eCCCCceEeeEEecCCeEEEEeCCeEEcHHHHh-C
Confidence 99999999999999999999877789999999999999888888 899999999999999999999999999999997 4
Q ss_pred CCCCeeecCCCCcEEEEEeCCCCCCCceEEEEcCCeeeeeecceeecCC-CeEEEEEeecCChhhhhcc-cccccceEEE
Q 046348 162 KGMPTVFVPEKIPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGD-DEIVLMATTATSIENLFHK-IDMVHFSLEK 239 (358)
Q Consensus 162 ~~~~~~w~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~NA~E~~~-~~iv~D~~~~~~~~~~~~~-~~~~~~~l~R 239 (358)
+++++.|+|++++||+||||++++.+.++||++|+||+||++||||+++ |+|++|.|++.+.+.+++. ..+.+++|+|
T Consensus 298 g~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~~~~~~~~~~l~r 377 (529)
T 3npe_A 298 GGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTE 377 (529)
T ss_dssp TCCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCCSSSSCCCCEEEE
T ss_pred CCCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhhccchhhccceEE
Confidence 5689999999999999999997666689999999999999999999863 7899988887655544432 3456789999
Q ss_pred EEEeCCCCceEEEeec----cCCccccccCCCCCCCcCceEEEeeccCCCCCCeEEEEecCCCeEEEEEEcCCCccCCCc
Q 046348 240 VRINLRTGHVFRNILS----TRNLELGSINSSYIGKKNRYVFMGVGKEIPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEP 315 (358)
Q Consensus 240 ~~idl~~g~v~~~~L~----~~~~EfP~In~~~~gk~yry~y~~~~~~~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EP 315 (358)
|+||+.+|+++++.|. +.++|||+||++|.||+|||+|+++.++...+++|+|+|++||+ ...||+++++++|||
T Consensus 378 ~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~-~~~~~~g~~~~~~EP 456 (529)
T 3npe_A 378 IRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGE-LTKFEYGEGRFGGEP 456 (529)
T ss_dssp EEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCC-EEEEECCTTBCCCCC
T ss_pred EEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCCc-eEEEEcCCCccccCC
Confidence 9999999999888877 48999999999999999999999998776678999999999998 788999999999999
Q ss_pred EEeecCCCCCCCCCCCCeEEEEEEEeCCCCeeEEEEEeCCCCC
Q 046348 316 LFVPRNEDHLEAADEDDGFVVTYIHDEIHEESKFLVMDAKSPI 358 (358)
Q Consensus 316 vFVPrp~~~~~~~~EDDG~lls~v~d~~~~~s~l~ILDA~~l~ 358 (358)
||||||++.+.+++|||||||++|+|...++|+|+||||++|+
T Consensus 457 vFVPrp~~~~~~~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~ 499 (529)
T 3npe_A 457 CFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMR 499 (529)
T ss_dssp EEEECCSCSSSSCCTTCEEEEEEEEBSSCCCEEEEEEETTTTE
T ss_pred EeeeCCCCCCCCCCCCCcEEEEEEEECCCCcEEEEEEeCCCCc
Confidence 9999996100017999999999999999999999999999984
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=3e-84 Score=653.04 Aligned_cols=315 Identities=26% Similarity=0.436 Sum_probs=286.8
Q ss_pred CcCcCceeeEEECCeEEEEecCCCCeEEecCCCCCceeeeeccccccc-cc-CCCCCceeeCC------CCcEEEEEecC
Q 046348 31 GFGLANTSLAFFSSKLLALGESDLPYIINSTREGDVETVGRWDFDEAL-FA-SMTAHPKTDMT------TKETFAFKFSP 102 (358)
Q Consensus 31 ~~~~aNt~v~~~~g~llAl~E~g~P~~ld~~~~~TLeT~g~~~~~~~l-~~-~~tAHP~~Dp~------tg~~~~~g~~~ 102 (358)
.+|+|||||++|+||||||||+|.||+|||. ||||+|.++|+++| ++ .||||||+||. ||||+|||++.
T Consensus 130 ~~~~aNT~v~~~~g~llAl~E~~~p~~ldp~---tLeT~G~~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~ 206 (490)
T 2biw_A 130 LKNIANTNITYWGDRLLALWEGGQPHRLEPS---NLATIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKS 206 (490)
T ss_dssp BCCCCCSEEEEETTEEEEECTTSCCEEECTT---TCCEEEECCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEE
T ss_pred cCCCCEEEEEEECCEEEEEEcCCCCEecccc---cccEeeeeccCCcccCCcccccCceECccccccCCCCeEEEEEecC
Confidence 6899999999999999999999999999874 99999999999999 54 79999999999 99999999998
Q ss_pred CCCCcEEEEEEcCCCCeEEeEeeecCCCcceeeceecCCCEeEEEeCccccCHHHHHcCC---CCCeeecCCCCcEEEEE
Q 046348 103 VFSPHLTFFRFDANGIKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGK---GMPTVFVPEKIPRIGII 179 (358)
Q Consensus 103 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdf~~Teny~V~~~~P~~~~~~~~l~~~---~~~~~w~~~~~t~~~vi 179 (358)
++...++++++|++|++.+..++ +++.++|||||+|||||+||+++|+.+|+.++++++ ..++.|+|++++||+||
T Consensus 207 ~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~HDfaiTeny~V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~Vi 285 (490)
T 2biw_A 207 SLSSTLTLLELDPQGKLLRQKTE-TFPGFAFIHDFAITPHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILV 285 (490)
T ss_dssp SSEEEEEEEEECTTSCEEEEEEE-EEESCCCCCCCEECSSEEEEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEE
T ss_pred CCCcEEEEEEECCCCCEEeeEEE-eCCCCceEeeeeccCCEEEEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEE
Confidence 76556999999999999988887 899999999999999999999999999999998654 36899999999999999
Q ss_pred eCCCCCCCceEEEEcCCeeeeeecceeecCCCeEEEEEeecCChhhhh-----cc---cccccceEEEEEEeCCCCceEE
Q 046348 180 LKYATSDAEMKWFNVPGFNAMHVFNAWENGDDEIVLMATTATSIENLF-----HK---IDMVHFSLEKVRINLRTGHVFR 251 (358)
Q Consensus 180 pR~~~~~~~v~~~~~~~~~~fH~~NA~E~~~~~iv~D~~~~~~~~~~~-----~~---~~~~~~~l~R~~idl~~g~v~~ 251 (358)
||+ + +.++||++|+||+||++||||++ ++||+|+|+|++.+.+. .. ...++++|+||+||+++|++++
T Consensus 286 pR~-~--~~v~~f~~~~~f~fH~~NA~Ee~-~~Iv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~i~l~~g~v~~ 361 (490)
T 2biw_A 286 PRD-G--GEIKRIPVQAGFVFHHANAFEEN-GKIILDSICYNSLPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEK 361 (490)
T ss_dssp ETT-S--CCCEEEEECCCEEEEEEEEEEET-TEEEEEEEEESCCCCCCTTCCGGGCCGGGSCCCEEEEEEEETTTTEEEE
T ss_pred ECC-C--CccEEEecCCCeEEecccceecC-CeEEEEEeccCCcccccccccccccccccCCCceEEEEEEECCCCceEE
Confidence 998 3 46899999999999999999997 89999999998755321 01 1234679999999999999999
Q ss_pred EeeccCCccccccCCCCCCCcCceEEEeecc---CCCCCCeEEEEecCCCeEEEEEEcCCCccCCCcEEeecCCCCCCCC
Q 046348 252 NILSTRNLELGSINSSYIGKKNRYVFMGVGK---EIPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPLFVPRNEDHLEAA 328 (358)
Q Consensus 252 ~~L~~~~~EfP~In~~~~gk~yry~y~~~~~---~~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~ 328 (358)
+.|++.++|||+||+++.||+|||+|+++.+ ....+++|+|+|+++|+ .+.|++++|+++|||+|||||++ +
T Consensus 362 ~~l~~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~~~~~~~~~l~K~D~~tg~-~~~~~~g~g~~~~EPvFVPrp~~----~ 436 (490)
T 2biw_A 362 QLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAILKVDLESGT-ETLRSFAPHGFAGEPIFVPRPGG----V 436 (490)
T ss_dssp EEEECSCEEEEECCGGGTTSCCSEEEEEECSSSSSCCCCCEEEEEETTTTE-EEEEECTTTEECCCCEEEECTTC----C
T ss_pred EeccCCcccccccChhhCCceeeeEEEEeecCCCCCCCCCeEEEEECCCCC-EEEEECCCCccccCCEEecCCCC----C
Confidence 9999999999999999999999999999875 34568999999999998 78888899999999999999964 7
Q ss_pred CCCCeEEEEEEEeCCCCeeEEEEEeCCCCC
Q 046348 329 DEDDGFVVTYIHDEIHEESKFLVMDAKSPI 358 (358)
Q Consensus 329 ~EDDG~lls~v~d~~~~~s~l~ILDA~~l~ 358 (358)
+|||||||++|+|..+++|+|+||||++|+
T Consensus 437 ~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~ 466 (490)
T 2biw_A 437 AEDDGWLLCLIYKADLHRSELVILDAQDIT 466 (490)
T ss_dssp STTCEEEEEEEEETTTTEEEEEEEETTCTT
T ss_pred CCCCcEEEEEEEeCCCCceeEEEEccCCCC
Confidence 999999999999999999999999999985
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=2.1e-79 Score=623.44 Aligned_cols=320 Identities=16% Similarity=0.185 Sum_probs=260.2
Q ss_pred ccCCCCcCcCceeeEEECCeEEEEecCCCCeEEecCCCCCceeeeecccccccc-cCCCCCceeeCCCCcEEEEEecCCC
Q 046348 26 INLKKGFGLANTSLAFFSSKLLALGESDLPYIINSTREGDVETVGRWDFDEALF-ASMTAHPKTDMTTKETFAFKFSPVF 104 (358)
Q Consensus 26 ~~~~~~~~~aNt~v~~~~g~llAl~E~g~P~~ld~~~~~TLeT~g~~~~~~~l~-~~~tAHP~~Dp~tg~~~~~g~~~~~ 104 (358)
+++.+.+|+|||||++|+||||||||++.||+|||+ ||||+|.++|++.|+ ..||||||+|| |||++|||+++++
T Consensus 123 ~~~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iDp~---tLeT~G~~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~ 198 (533)
T 3kvc_A 123 FRGVEVTDNALVNIYPVGEDYYACTETNFITKVNPE---TLETIKQVDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGK 198 (533)
T ss_dssp ----CCCCCCCSEEEEETTEEEEECSSSEEEEECTT---TCCEEEEEEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC-
T ss_pred hccCCCCCCCEEEEEEECCEEEEEEcCCcCEEeChH---HcccccccccCCccCCCccCCCCccCC-CCCEEEEeeccCC
Confidence 333356899999999999999999999999999875 999999999999997 57999999999 9999999999875
Q ss_pred C--CcEEEEEEcCCC-----CeEE-----eEeeecCCCcceeeceecCCCEeEEEeCccccCHHHHHcC----CC---CC
Q 046348 105 S--PHLTFFRFDANG-----IKQK-----DVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLG----KG---MP 165 (358)
Q Consensus 105 ~--~~~~~~~~d~~g-----~~~~-----~~~~~~~~~~~~iHdf~~Teny~V~~~~P~~~~~~~~l~~----~~---~~ 165 (358)
. +.+.++++++++ .+.+ .++..+++.|+|||||+|||||+||+++|+.+|+.+|+++ +. ++
T Consensus 199 ~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~ 278 (533)
T 3kvc_A 199 NFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDC 278 (533)
T ss_dssp --CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCEECSSEEEEEECSEEEC-----------CCCSGGG
T ss_pred CCCcEEEEEEECccccccccccccceeEEeeccccCCCCceeeeeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHh
Confidence 3 678888887542 1211 1222245689999999999999999999999999999865 33 37
Q ss_pred eeecCCCCcEEEEEeCCCCCCCceEEEEcCCeeeeeecceeecCCCeEEEEEeecCC-hhhhh----ccc----------
Q 046348 166 TVFVPEKIPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGDDEIVLMATTATS-IENLF----HKI---------- 230 (358)
Q Consensus 166 ~~w~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~NA~E~~~~~iv~D~~~~~~-~~~~~----~~~---------- 230 (358)
+.|+|++++||+||||++++ ..++||++++||+||++||||++ |+||+|+|+|++ ...+. +.+
T Consensus 279 ~~~~p~~~tr~~VipR~~~~-~~~~~~~~~~~f~fH~~NA~Ee~-~~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 356 (533)
T 3kvc_A 279 FESNETMGVWLHIADKKRKK-YINNKYRTSPFNLFHHINTYEDH-EFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKN 356 (533)
T ss_dssp EEECSSCCEEEEEEETTTTE-EEEEEEEECCEEEEEEEEEEEET-TEEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHH
T ss_pred eeecCCCCcEEEEEECCCCC-cccEEEEeCCeeEEeeeeeEEeC-CEEEEEEeeeCCchhhhhhhhhhhhcccchhcccc
Confidence 99999999999999999753 23578999999999999999987 899999999987 33211 100
Q ss_pred --ccccceEEEEEEeCCCC------------------------c--eEEEeecc--C-CccccccCC-CCCCCcCceEEE
Q 046348 231 --DMVHFSLEKVRINLRTG------------------------H--VFRNILST--R-NLELGSINS-SYIGKKNRYVFM 278 (358)
Q Consensus 231 --~~~~~~l~R~~idl~~g------------------------~--v~~~~L~~--~-~~EfP~In~-~~~gk~yry~y~ 278 (358)
....++|+||+||+.++ + ++.+.|++ . ++|||+||+ ++.||+|||+|+
T Consensus 357 ~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~ 436 (533)
T 3kvc_A 357 ARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYG 436 (533)
T ss_dssp HTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEEEECEEEECBTTEEEEEEECCHHHHTTSCCCEEEE
T ss_pred ccccCCceEEEEEEeCCcccccccccccccccccceeeeccCCceeeeeeeeccCCcccccCceECHHHhCCCcccEEEE
Confidence 13567899999999874 2 34567774 6 899999999 799999999999
Q ss_pred eeccCCCCCCeEEEEecCCCeEEEEEEcCCCccCCCcEEeecCCCCCCCCCCCCeEEEEEEEeCCC--CeeEEEEEeCCC
Q 046348 279 GVGKEIPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPLFVPRNEDHLEAADEDDGFVVTYIHDEIH--EESKFLVMDAKS 356 (358)
Q Consensus 279 ~~~~~~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~lls~v~d~~~--~~s~l~ILDA~~ 356 (358)
++.+. ..+++|+|+|++||+ . +.|.++++++|||||||||++ ++|||||||++|+|..+ ++|+|+||||++
T Consensus 437 ~~~~~-~~~~~l~K~D~~tg~-~-~~w~~~~~~~~EPiFVPrp~~----~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~ 509 (533)
T 3kvc_A 437 LGLNH-FVPDRLCKLNVKTKE-T-WVWQEPDSYPSEPIFVSHPDA----LEEDDGVVLSVVVSPGAGQKPAYLLILNAKD 509 (533)
T ss_dssp EEEET-TEEEEEEEEETTTCC-E-EEECCTTCBCCCCEEEECTTC----CSTTCEEEEEEEECCSTTSCSEEEEEEETTT
T ss_pred eccCC-CCCceeEEEEcCCCC-E-EEEeCCCccccCceeecCCCC----CCCCCcEEEEEEEeCCcCCCccEEEEEeCCC
Confidence 88763 467999999999998 4 467899999999999999964 79999999999999985 567999999999
Q ss_pred CC
Q 046348 357 PI 358 (358)
Q Consensus 357 l~ 358 (358)
|+
T Consensus 510 l~ 511 (533)
T 3kvc_A 510 LS 511 (533)
T ss_dssp CC
T ss_pred Ch
Confidence 85
No 4
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=37.27 E-value=1.4e+02 Score=23.42 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=35.5
Q ss_pred CCCcEEEEEecCCC--CCcEEEEEEc----CCCCeEEeEeeecCCCcceeeceecCCCEeEE
Q 046348 91 TTKETFAFKFSPVF--SPHLTFFRFD----ANGIKQKDVPILSINRPTFIHDFAITKRFAIF 146 (358)
Q Consensus 91 ~tg~~~~~g~~~~~--~~~~~~~~~d----~~g~~~~~~~~~~~~~~~~iHdf~~Teny~V~ 146 (358)
+||+.+.+....+. ...+.+|++. ++|.+.|.+++ ||...++++.+|
T Consensus 35 ktGdtf~it~~~~~~d~g~~KIyrv~~~~~~~g~L~RYkTI---------~d~~~~~~~~~f 87 (120)
T 4guc_A 35 KHGDTFDVTIYTGGKDTGIVKIYQLSGNENDEINLHRYKTI---------YDSGLKHNYGRF 87 (120)
T ss_dssp ETTCEEEEEEECCSSBCCEEEEEEECSCTTCSCCEEEEEEE---------ECCCCCTTEEEE
T ss_pred ccCCEEEEEEEcCCCccceEEEEEEccCCCCCcceEEEEEe---------ccCCCcCCeeEE
Confidence 48999999887753 2458999995 56888876665 677888887776
No 5
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=20.37 E-value=1.4e+02 Score=28.09 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=37.8
Q ss_pred cCCccccccCCCCCCCcCceEEEeeccCCCCCCeEEEEecCCCeEEEEEEcCCCccCCCcEEeecC
Q 046348 256 TRNLELGSINSSYIGKKNRYVFMGVGKEIPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPLFVPRN 321 (358)
Q Consensus 256 ~~~~EfP~In~~~~gk~yry~y~~~~~~~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPvFVPrp 321 (358)
+...+||.-= ....+|.-+|..+ ...-|.-+|++||+. .+. ++..+||||+-.+
T Consensus 256 ea~~DFPVam--qvs~kygviyviT-----K~G~ihlyDleTgt~--i~~---nrIS~d~iF~ta~ 309 (365)
T 2xzh_A 256 EAQNDFPVAM--QISEKHDVVFLIT-----KYGYIHLYDLETGTC--IYM---NRISGETIFVTAP 309 (365)
T ss_dssp TCTTCCEEEE--EEETTTTEEEEEE-----TTSEEEEEETTTCCE--EEE---EECCSSCEEEEEE
T ss_pred cccCCceEEE--EecccCCEEEEEe-----CCcEEEEEEcccCcE--EEE---eccCCCceEEecc
Confidence 4456777511 1235678888876 456788899999972 232 5688999999876
No 6
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=14.69 E-value=57 Score=18.06 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=8.0
Q ss_pred CCCcCceEEEe
Q 046348 269 IGKKNRYVFMG 279 (358)
Q Consensus 269 ~gk~yry~y~~ 279 (358)
.|.+|||+|-.
T Consensus 11 tG~EYrYile~ 21 (26)
T 2xpn_B 11 TGEEYRYVLES 21 (26)
T ss_pred CCceEEEEeec
Confidence 46788888854
No 7
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=14.42 E-value=4e+02 Score=23.60 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCcCcCcee-eEEECCeEE-EEecCCCCeEEecCCCCCceeeeecccccccccCCCCCcee--------eCCCCcEEEEE
Q 046348 30 KGFGLANTS-LAFFSSKLL-ALGESDLPYIINSTREGDVETVGRWDFDEALFASMTAHPKT--------DMTTKETFAFK 99 (358)
Q Consensus 30 ~~~~~aNt~-v~~~~g~ll-Al~E~g~P~~ld~~~~~TLeT~g~~~~~~~l~~~~tAHP~~--------Dp~tg~~~~~g 99 (358)
..+...+.| +-+.+|+|| +.|++..-+.+|+. |.+-++..++.+-.+..-+.+|.. ||+++++|--|
T Consensus 167 ~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~---tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 167 HGEELPELNELEWVDGEIFANVWQTNKIVRIDPE---TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TTEECCCEEEEEEETTEEEEEETTSSEEEEECTT---TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCccccccceeEEECCEEEEEEccCCeEEEEECC---CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
No 8
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=14.22 E-value=8.5e+02 Score=23.72 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=52.4
Q ss_pred EEEEEeCCCCceEEEeeccCCccccccCCCCCCCcCceEEEeeccCCCCCCeEEEEecC--CCeEEEEEEcCCCccCCCc
Q 046348 238 EKVRINLRTGHVFRNILSTRNLELGSINSSYIGKKNRYVFMGVGKEIPKMEGVVKIDLE--KEIEVSRRFYGPSCFGGEP 315 (358)
Q Consensus 238 ~R~~idl~~g~v~~~~L~~~~~EfP~In~~~~gk~yry~y~~~~~~~~~~~~lvk~D~~--~g~~~~~~~~~~~~~~~EP 315 (358)
.-..||+.++++..+.-.+.......+++ .-||+|.++. -+.|..+|+. +++.+... ..| .+|
T Consensus 178 ~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-----DGr~lyv~~~-----dg~V~viD~~~~t~~~v~~i--~~G---~~P 242 (567)
T 1qks_A 178 QIALIDGSTYEIKTVLDTGYAVHISRLSA-----SGRYLFVIGR-----DGKVNMIDLWMKEPTTVAEI--KIG---SEA 242 (567)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECT-----TSCEEEEEET-----TSEEEEEETTSSSCCEEEEE--ECC---SEE
T ss_pred eEEEEECCCCeEEEEEeCCCCccceEECC-----CCCEEEEEcC-----CCeEEEEECCCCCCcEeEEE--ecC---CCC
Confidence 34567888887665433232223334444 3468997642 2579999996 77633333 222 244
Q ss_pred EEeecCCCCCCCCC-CCCeEEEEEEEeCCCCeeEEEEEeCCCCC
Q 046348 316 LFVPRNEDHLEAAD-EDDGFVVTYIHDEIHEESKFLVMDAKSPI 358 (358)
Q Consensus 316 vFVPrp~~~~~~~~-EDDG~lls~v~d~~~~~s~l~ILDA~~l~ 358 (358)
.-+.=.. .. -|..||++.-+.. ..+.|+|+.+++
T Consensus 243 ~~ia~s~-----~~~pDGk~l~v~n~~~----~~v~ViD~~t~~ 277 (567)
T 1qks_A 243 RSIETSK-----MEGWEDKYAIAGAYWP----PQYVIMDGETLE 277 (567)
T ss_dssp EEEEECC-----STTCTTTEEEEEEEET----TEEEEEETTTCC
T ss_pred ceeEEcc-----ccCCCCCEEEEEEccC----CeEEEEECCCCc
Confidence 4333210 00 1445777666542 356788887763
No 9
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=14.15 E-value=3.1e+02 Score=26.82 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=37.0
Q ss_pred cCCccccccCCCCCCCcCceEEEeeccCCCCCCeEEEEecCCCeEEEEEEcCCCccCCCcEEeecC
Q 046348 256 TRNLELGSINSSYIGKKNRYVFMGVGKEIPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPLFVPRN 321 (358)
Q Consensus 256 ~~~~EfP~In~~~~gk~yry~y~~~~~~~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPvFVPrp 321 (358)
+...+||.-= ....+|.-+|.++ ...-|.-+|++||+. .|. ++..+||||+-.+
T Consensus 255 e~~~DFPvam--qvs~kygviyviT-----K~G~i~lyDleTgt~--i~~---nrIs~~~iF~t~~ 308 (494)
T 1bpo_A 255 EAQNDFPVAM--QISEKHDVVFLIT-----KYGYIHLYDLETGTC--IYM---NRISGETIFVTAP 308 (494)
T ss_dssp TSTTCCEEEE--EEETTTTEEEEEE-----TTSEEEEEETTTCCE--EEE---EECCSSCEEEEEE
T ss_pred ccccCceeEE--EecccCCEEEEEe-----cCceEEEEeccccee--eee---ecccCCceEEecc
Confidence 4456777511 1234678888776 456788899999972 332 4588999999876
No 10
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=11.59 E-value=6.7e+02 Score=24.99 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCeEEEEEEcCCC-----ccCCCcEEeec
Q 046348 287 MEGVVKIDLEKEIEVSRRFYGPS-----CFGGEPLFVPR 320 (358)
Q Consensus 287 ~~~lvk~D~~~g~~~~~~~~~~~-----~~~~EPvFVPr 320 (358)
.++|+-+|.+||+..+.+...++ ...++|+++.-
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~ 320 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADI 320 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEE
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEec
Confidence 35799999999985444444332 23688998864
Done!