Query 046348
Match_columns 358
No_of_seqs 142 out of 1016
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 19:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046348.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046348hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 42.6 5.3 0.00039 22.3 1.5 16 87-102 3-18 (31)
2 d1k91a_ b.104.1.1 (A:) Calreti 17.2 32 0.0023 19.8 1.8 10 313-322 1-10 (37)
3 d1w6sa_ b.70.1.1 (A:) Methanol 16.3 2.5E+02 0.018 25.5 9.3 35 286-320 276-315 (596)
4 d2ap1a2 c.55.1.10 (A:1-117) Pu 15.7 1E+02 0.0074 21.0 5.0 27 98-125 3-29 (117)
5 d1qksa2 b.70.2.1 (A:136-567) C 15.6 51 0.0037 28.7 3.8 25 334-358 381-405 (432)
6 d1utca2 b.69.6.1 (A:4-330) Cla 15.3 89 0.0065 26.7 5.1 54 256-321 252-305 (327)
7 d1j6ua1 c.5.1.1 (A:0-88) UDP-N 13.9 12 0.00091 25.9 -0.9 18 7-24 13-30 (89)
8 d2ghsa1 b.68.6.1 (A:20-314) Re 13.8 1.1E+02 0.008 24.9 5.4 46 88-141 206-251 (295)
9 d1p3da1 c.5.1.1 (A:11-106) UDP 11.3 26 0.0019 24.3 0.2 18 7-24 20-37 (96)
10 d2mysa1 b.34.3.1 (A:34-79) Myo 10.9 91 0.0066 18.6 2.7 22 316-346 5-26 (46)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=42.62 E-value=5.3 Score=22.32 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.1
Q ss_pred eeeCCCCcEEEEEecC
Q 046348 87 KTDMTTKETFAFKFSP 102 (358)
Q Consensus 87 ~~Dp~tg~~~~~g~~~ 102 (358)
++||.||++|-.-++.
T Consensus 3 R~DP~TG~iYH~~f~p 18 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSP 18 (31)
T ss_dssp EECTTTCCEEESSSSC
T ss_pred cCCCCCCcEeEEecCC
Confidence 5799999998877655
No 2
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.21 E-value=32 Score=19.76 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=8.7
Q ss_pred CCcEEeecCC
Q 046348 313 GEPLFVPRNE 322 (358)
Q Consensus 313 ~EPvFVPrp~ 322 (358)
|||-|||.|.
T Consensus 1 ~eP~~IpDp~ 10 (37)
T d1k91a_ 1 GKPEHIPDPD 10 (37)
T ss_dssp CCCSEEECSS
T ss_pred CCccccCCCC
Confidence 6999999994
No 3
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}
Probab=16.35 E-value=2.5e+02 Score=25.45 Aligned_cols=35 Identities=6% Similarity=-0.164 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCeEEEEEEcCCC-----ccCCCcEEeec
Q 046348 286 KMEGVVKIDLEKEIEVSRRFYGPS-----CFGGEPLFVPR 320 (358)
Q Consensus 286 ~~~~lvk~D~~~g~~~~~~~~~~~-----~~~~EPvFVPr 320 (358)
..++|+-+|.+||+..+.+..-++ ..+.+|+.+--
T Consensus 276 ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~ 315 (596)
T d1w6sa_ 276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQ 315 (596)
T ss_dssp TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE
T ss_pred ccccccccccccccccccccceeccccCCccccceeeeec
Confidence 468999999999984332222211 23678887653
No 4
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=15.74 E-value=1e+02 Score=21.04 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=21.9
Q ss_pred EEecCCCCCcEEEEEEcCCCCeEEeEee
Q 046348 98 FKFSPVFSPHLTFFRFDANGIKQKDVPI 125 (358)
Q Consensus 98 ~g~~~~~~~~~~~~~~d~~g~~~~~~~~ 125 (358)
+|++.+. +++.+..+|.+|++..+..+
T Consensus 3 iGiDiGg-T~i~~~l~d~~g~i~~~~~~ 29 (117)
T d2ap1a2 3 YGFDIGG-TKIALGVFDSTRRLQWEKRV 29 (117)
T ss_dssp EEEEECS-SEEEEEEEETTCCEEEEEEE
T ss_pred EEEEECc-ceEEEEEEeCCCCEEEEEEE
Confidence 7777766 78899999999999876665
No 5
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=15.61 E-value=51 Score=28.70 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=19.1
Q ss_pred EEEEEEEeCCCCeeEEEEEeCCCCC
Q 046348 334 FVVTYIHDEIHEESKFLVMDAKSPI 358 (358)
Q Consensus 334 ~lls~v~d~~~~~s~l~ILDA~~l~ 358 (358)
+|++.++......+.++|+|+++++
T Consensus 381 ~v~~S~~~~~~~~g~i~i~D~~T~k 405 (432)
T d1qksa2 381 EVWFSVWNGKDQESALVVVDDKTLE 405 (432)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EEEEEEecCCCCCCcEEEEECCCce
Confidence 6666666666677889999999863
No 6
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.34 E-value=89 Score=26.72 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=36.9
Q ss_pred cCCccccccCCCCCCCcCceEEEeeccCCCCCCeEEEEecCCCeEEEEEEcCCCccCCCcEEeecC
Q 046348 256 TRNLELGSINSSYIGKKNRYVFMGVGKEIPKMEGVVKIDLEKEIEVSRRFYGPSCFGGEPLFVPRN 321 (358)
Q Consensus 256 ~~~~EfP~In~~~~gk~yry~y~~~~~~~~~~~~lvk~D~~~g~~~~~~~~~~~~~~~EPvFVPrp 321 (358)
+...+||.-= ....+|--+|..+ ...-|.-+|++||+. .+. ++..+||||+-.+
T Consensus 252 ea~~DFPvam--qvs~kygiiyviT-----K~G~i~lyDleTgt~--i~~---nRIs~~~iF~~a~ 305 (327)
T d1utca2 252 EAQNDFPVAM--QISEKHDVVFLIT-----KYGYIHLYDLETGTC--IYM---NRISGETIFVTAP 305 (327)
T ss_dssp TCTTCCEEEE--EEETTTTEEEEEE-----TTSEEEEEETTTCCE--EEE---EECCSSCEEEEEE
T ss_pred cccCCcEEEE--EeeccCCEEEEEe-----cCcEEEEEEcccccE--EEE---eecCCCceEEecc
Confidence 3445777411 1234678888876 456788899999972 232 4688999999987
No 7
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=13.91 E-value=12 Score=25.89 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=14.3
Q ss_pred ChhHHHHHHHHHHHHhcC
Q 046348 7 GIADIIQCVAAVARVLMG 24 (358)
Q Consensus 7 ~~~~~~~~~~~~~r~~~~ 24 (358)
||++||+++++.+-.+.|
T Consensus 13 GMs~LA~~L~~~G~~VsG 30 (89)
T d1j6ua1 13 GMSAVALHEFSNGNDVYG 30 (89)
T ss_dssp HHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCeEEE
Confidence 679999999988876643
No 8
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}
Probab=13.78 E-value=1.1e+02 Score=24.86 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=28.2
Q ss_pred eeCCCCcEEEEEecCCCCCcEEEEEEcCCCCeEEeEeeecCCCcceeeceecCC
Q 046348 88 TDMTTKETFAFKFSPVFSPHLTFFRFDANGIKQKDVPILSINRPTFIHDFAITK 141 (358)
Q Consensus 88 ~Dp~tg~~~~~g~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdf~~Te 141 (358)
+|.+ |.+|.-.+..+ .+.++|++|++...+.. +.+.++.+ -|+=.+
T Consensus 206 vD~~-GnlWva~~~~g-----~V~~~dp~G~~~~~i~l-P~~~~T~~-~FGG~d 251 (295)
T d2ghsa1 206 CDAE-GHIWNARWGEG-----AVDRYDTDGNHIARYEV-PGKQTTCP-AFIGPD 251 (295)
T ss_dssp ECTT-SCEEEEEETTT-----EEEEECTTCCEEEEEEC-SCSBEEEE-EEESTT
T ss_pred EcCC-CCEEeeeeCCC-----ceEEecCCCcEeeEecC-CCCceEEE-EEeCCC
Confidence 4654 77765555332 47889999999877665 55555443 254344
No 9
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=11.31 E-value=26 Score=24.33 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHHhcC
Q 046348 7 GIADIIQCVAAVARVLMG 24 (358)
Q Consensus 7 ~~~~~~~~~~~~~r~~~~ 24 (358)
||++||+++.+.|-.+.|
T Consensus 20 GMs~LA~~L~~~G~~VsG 37 (96)
T d1p3da1 20 GMSGIAEILLNEGYQISG 37 (96)
T ss_dssp THHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 789999999999886644
No 10
>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=10.89 E-value=91 Score=18.59 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=15.3
Q ss_pred EEeecCCCCCCCCCCCCeEEEEEEEeCCCCe
Q 046348 316 LFVPRNEDHLEAADEDDGFVVTYIHDEIHEE 346 (358)
Q Consensus 316 vFVPrp~~~~~~~~EDDG~lls~v~d~~~~~ 346 (358)
+|||.+ -+|||-+.+-....++
T Consensus 5 vwVpD~---------ke~yv~~~Iks~~Gdk 26 (46)
T d2mysa1 5 VFVVHP---------KQSFVKGTIQSKEGGK 26 (46)
T ss_dssp EEEECS---------SSSEEEEEEEEECSSE
T ss_pred EEcccC---------cccEEEEEEEEccCCE
Confidence 688875 4588888877655444
Done!