BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046349
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
 pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 272

 Score = 28.9 bits (63), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 9   QLSTLEELFLVKNNFVRIPESIM-QLSKLKFLNLSYSE 45
           +L+ L+EL LV+N    +P+ +  +L+ L +LNL++++
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144


>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 549

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 5   ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLS 42
           E+L  L  L  + + KN+F  +PE+     K+K+LNLS
Sbjct: 381 ETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLS 418


>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
 pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
          Length = 606

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSY 43
           ELP  L  LSTL++L L  N F    E++ Q+S   F +L++
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKF----ENLCQISASNFPSLTH 329


>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
           Binding Of A Tri-acylated Lipopeptide
 pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 549

 Score = 26.2 bits (56), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 5   ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLS 42
           E L  L  L  L + +N F  +P+S     K++FLNLS
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLS 418


>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
 pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
           Lipoteichoic Acid Complex
 pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
          Length = 580

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 5   ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLS 42
           E L  L  L  L + +N F  +P+S     K++FLNLS
Sbjct: 407 EILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLS 444


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,768,026
Number of Sequences: 62578
Number of extensions: 74860
Number of successful extensions: 114
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 7
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)