Query 046349
Match_columns 119
No_of_seqs 219 out of 1949
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.1 1.9E-10 4.2E-15 88.5 6.0 76 2-77 433-512 (623)
2 PLN00113 leucine-rich repeat r 99.1 5.2E-11 1.1E-15 95.0 1.9 75 3-77 156-234 (968)
3 KOG0617 Ras suppressor protein 99.0 5.8E-11 1.2E-15 77.9 1.3 74 2-76 47-124 (264)
4 PLN00113 leucine-rich repeat r 99.0 3E-10 6.4E-15 90.8 4.7 79 2-80 179-261 (968)
5 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.4E-14 59.3 2.9 55 11-66 1-60 (61)
6 KOG0472 Leucine-rich repeat pr 98.9 7.5E-10 1.6E-14 80.5 1.5 90 6-101 223-316 (565)
7 PF12799 LRR_4: Leucine Rich r 98.8 6.6E-09 1.4E-13 53.3 3.4 40 11-51 1-40 (44)
8 KOG0617 Ras suppressor protein 98.8 2.5E-10 5.3E-15 75.0 -2.7 111 3-118 94-232 (264)
9 PLN03150 hypothetical protein; 98.8 1.3E-08 2.8E-13 78.5 5.4 85 13-100 420-508 (623)
10 KOG0444 Cytoskeletal regulator 98.7 2.9E-09 6.3E-14 81.5 0.7 76 2-79 94-173 (1255)
11 PLN03210 Resistant to P. syrin 98.6 9.5E-08 2.1E-12 78.2 7.1 82 5-87 628-715 (1153)
12 PLN03210 Resistant to P. syrin 98.5 2.5E-07 5.5E-12 75.7 7.1 60 2-62 793-853 (1153)
13 KOG4194 Membrane glycoprotein 98.5 1.3E-08 2.7E-13 77.3 -1.7 23 87-110 421-443 (873)
14 KOG0472 Leucine-rich repeat pr 98.5 1.9E-09 4.1E-14 78.5 -5.9 90 2-96 128-220 (565)
15 PF13855 LRR_8: Leucine rich r 98.4 1.3E-07 2.8E-12 51.6 1.9 44 2-45 15-60 (61)
16 KOG0444 Cytoskeletal regulator 98.4 3.1E-08 6.8E-13 76.0 -1.9 77 2-80 213-292 (1255)
17 KOG4194 Membrane glycoprotein 98.2 3.3E-07 7.2E-12 69.8 1.1 104 7-114 265-373 (873)
18 KOG0532 Leucine-rich repeat (L 98.2 1.1E-07 2.3E-12 71.9 -1.6 90 2-96 157-248 (722)
19 KOG4237 Extracellular matrix p 98.2 2.9E-07 6.2E-12 67.1 0.6 105 2-111 60-169 (498)
20 PRK15387 E3 ubiquitin-protein 98.2 2.1E-06 4.5E-11 67.8 4.8 62 36-102 404-465 (788)
21 PRK15387 E3 ubiquitin-protein 98.2 3.5E-06 7.6E-11 66.5 5.7 57 2-64 215-271 (788)
22 PF14580 LRR_9: Leucine-rich r 98.2 2E-06 4.3E-11 56.7 3.6 60 6-67 36-100 (175)
23 PRK15370 E3 ubiquitin-protein 98.1 7.5E-06 1.6E-10 64.6 6.5 69 12-84 221-291 (754)
24 PF14580 LRR_9: Leucine-rich r 98.1 4.8E-06 1.1E-10 54.8 4.3 86 6-93 59-154 (175)
25 KOG4237 Extracellular matrix p 98.1 1.2E-06 2.7E-11 63.9 1.4 87 6-96 269-360 (498)
26 PRK15370 E3 ubiquitin-protein 98.1 9.9E-06 2.1E-10 64.0 6.2 77 2-84 192-270 (754)
27 KOG0618 Serine/threonine phosp 98.0 6.3E-07 1.4E-11 70.9 -1.1 45 7-52 379-424 (1081)
28 KOG4658 Apoptotic ATPase [Sign 98.0 2.4E-06 5.2E-11 68.4 1.9 63 2-64 586-651 (889)
29 KOG0618 Serine/threonine phosp 97.9 1.8E-06 3.9E-11 68.4 -0.2 84 3-87 398-487 (1081)
30 COG4886 Leucine-rich repeat (L 97.8 1.3E-05 2.9E-10 58.4 1.8 69 3-73 131-203 (394)
31 KOG4658 Apoptotic ATPase [Sign 97.7 1.5E-05 3.3E-10 63.9 2.2 69 7-76 567-639 (889)
32 KOG1259 Nischarin, modulator o 97.7 8.9E-06 1.9E-10 58.0 0.6 58 8-66 281-340 (490)
33 PF00560 LRR_1: Leucine Rich R 97.7 8.1E-06 1.8E-10 35.5 0.2 21 12-32 1-21 (22)
34 KOG0532 Leucine-rich repeat (L 97.7 4.1E-06 8.9E-11 63.6 -1.5 77 2-80 89-167 (722)
35 PRK15386 type III secretion pr 97.6 7E-05 1.5E-09 55.4 4.1 67 7-76 48-115 (426)
36 KOG1259 Nischarin, modulator o 97.6 2.3E-05 5E-10 55.9 0.8 43 3-46 299-341 (490)
37 COG4886 Leucine-rich repeat (L 97.5 4.1E-05 8.9E-10 55.9 1.7 74 2-77 154-230 (394)
38 cd00116 LRR_RI Leucine-rich re 97.5 5.8E-05 1.3E-09 53.1 2.1 35 11-45 137-176 (319)
39 cd00116 LRR_RI Leucine-rich re 97.5 6.4E-05 1.4E-09 52.9 1.8 42 5-46 75-120 (319)
40 PF12799 LRR_4: Leucine Rich r 97.4 0.00013 2.9E-09 37.2 2.4 27 2-28 15-41 (44)
41 KOG4579 Leucine-rich repeat (L 97.4 1.5E-05 3.2E-10 50.8 -1.8 75 8-84 50-128 (177)
42 PRK15386 type III secretion pr 97.2 0.00065 1.4E-08 50.4 4.8 55 35-94 157-218 (426)
43 KOG0531 Protein phosphatase 1, 97.2 0.00034 7.3E-09 51.7 3.1 59 7-66 91-151 (414)
44 KOG4579 Leucine-rich repeat (L 97.1 5.4E-05 1.2E-09 48.3 -1.3 71 2-74 67-141 (177)
45 PF13504 LRR_7: Leucine rich r 97.0 0.00042 9.2E-09 28.1 1.3 16 12-27 2-17 (17)
46 KOG1859 Leucine-rich repeat pr 96.8 0.00027 5.7E-09 55.7 -0.2 64 5-71 181-247 (1096)
47 smart00370 LRR Leucine-rich re 96.7 0.0019 4.1E-08 28.8 2.3 21 10-30 1-21 (26)
48 smart00369 LRR_TYP Leucine-ric 96.7 0.0019 4.1E-08 28.8 2.3 21 10-30 1-21 (26)
49 KOG2739 Leucine-rich acidic nu 96.7 0.0013 2.8E-08 45.7 2.5 37 9-45 63-102 (260)
50 KOG0531 Protein phosphatase 1, 96.6 0.00075 1.6E-08 49.9 0.8 60 7-68 114-175 (414)
51 KOG1859 Leucine-rich repeat pr 96.0 0.0015 3.2E-08 51.8 -0.5 58 6-65 204-264 (1096)
52 KOG3665 ZYG-1-like serine/thre 96.0 0.0045 9.7E-08 48.9 2.2 56 8-64 170-229 (699)
53 KOG3207 Beta-tubulin folding c 95.7 0.0046 1E-07 46.1 1.1 62 6-67 141-209 (505)
54 KOG1644 U2-associated snRNP A' 95.7 0.017 3.6E-07 39.2 3.6 58 7-65 60-123 (233)
55 KOG1644 U2-associated snRNP A' 95.4 0.035 7.6E-07 37.7 4.2 57 10-67 41-100 (233)
56 KOG2739 Leucine-rich acidic nu 95.3 0.021 4.6E-07 39.8 3.3 79 8-87 40-127 (260)
57 KOG2123 Uncharacterized conser 95.0 0.0015 3.2E-08 46.4 -3.2 65 8-74 38-107 (388)
58 smart00364 LRR_BAC Leucine-ric 94.8 0.02 4.4E-07 25.7 1.3 18 11-28 2-19 (26)
59 KOG1909 Ran GTPase-activating 94.4 0.018 3.8E-07 41.9 1.0 62 6-67 208-282 (382)
60 KOG2123 Uncharacterized conser 94.3 0.0031 6.7E-08 44.8 -3.0 52 11-64 19-72 (388)
61 KOG2982 Uncharacterized conser 93.5 0.035 7.5E-07 40.0 1.1 57 9-65 69-131 (418)
62 KOG2120 SCF ubiquitin ligase, 93.1 0.006 1.3E-07 43.8 -3.2 79 12-90 186-274 (419)
63 KOG3207 Beta-tubulin folding c 92.9 0.033 7.2E-07 41.7 0.3 79 8-86 118-207 (505)
64 smart00365 LRR_SD22 Leucine-ri 92.9 0.098 2.1E-06 23.5 1.7 16 10-25 1-16 (26)
65 KOG2120 SCF ubiquitin ligase, 92.6 0.06 1.3E-06 38.9 1.2 56 8-65 310-373 (419)
66 PF13516 LRR_6: Leucine Rich r 92.1 0.042 9E-07 23.8 -0.0 14 11-24 2-15 (24)
67 KOG3665 ZYG-1-like serine/thre 91.2 0.088 1.9E-06 41.9 0.9 53 10-63 147-203 (699)
68 COG5238 RNA1 Ran GTPase-activa 90.5 0.38 8.3E-06 34.5 3.4 46 6-52 87-137 (388)
69 smart00368 LRR_RI Leucine rich 89.1 0.38 8.3E-06 21.7 1.8 14 11-24 2-15 (28)
70 KOG2982 Uncharacterized conser 85.9 0.34 7.3E-06 35.1 0.8 38 7-44 93-131 (418)
71 KOG1909 Ran GTPase-activating 82.2 2.4 5.2E-05 31.3 3.8 16 30-45 209-224 (382)
72 KOG0473 Leucine-rich repeat pr 81.4 0.042 9E-07 38.4 -5.1 73 6-80 37-112 (326)
73 PF13306 LRR_5: Leucine rich r 76.4 6.4 0.00014 23.6 4.0 37 7-44 8-45 (129)
74 TIGR00864 PCC polycystin catio 76.0 2.2 4.8E-05 39.0 2.4 30 17-46 1-31 (2740)
75 KOG0473 Leucine-rich repeat pr 75.9 0.25 5.5E-06 34.6 -2.6 58 7-65 61-121 (326)
76 KOG3864 Uncharacterized conser 75.0 1.5 3.4E-05 29.8 1.0 59 12-70 102-166 (221)
77 COG5238 RNA1 Ran GTPase-activa 73.0 2.8 6.1E-05 30.2 1.9 17 8-24 27-43 (388)
78 smart00367 LRR_CC Leucine-rich 67.5 5.5 0.00012 17.2 1.7 11 35-45 3-13 (26)
79 KOG3763 mRNA export factor TAP 60.0 6.3 0.00014 30.8 1.7 63 9-71 216-286 (585)
80 KOG1947 Leucine rich repeat pr 27.8 52 0.0011 24.3 2.2 61 8-68 240-308 (482)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.09 E-value=1.9e-10 Score=88.48 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=69.8
Q ss_pred CcChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFS 77 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~ 77 (119)
.+|.+++.+++|+.|++++|.+. .+|..++.+++|+.|++++|++.+.+|+. +.+|+.|++++|.+.+.+|..++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 47888999999999999999998 89999999999999999999999999986 578999999999999999988764
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.06 E-value=5.2e-11 Score=95.03 Aligned_cols=75 Identities=25% Similarity=0.303 Sum_probs=47.8
Q ss_pred cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccC
Q 046349 3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFS 77 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~ 77 (119)
+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|.. +.+|+.|++++|...+.+|..++.
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 5666667777777777777665 66666677777777777776666666653 345666666666555556655543
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.04 E-value=5.8e-11 Score=77.94 Aligned_cols=74 Identities=31% Similarity=0.419 Sum_probs=54.6
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCC---CCCceeeccCCCCcc-ccCcccc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLP---CSLLELDAHHCTVLD-TLSGLIF 76 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~---~~L~~L~l~~~~~~~-~lp~~~~ 76 (119)
.+|+.|..+.+|+.|++++|+++.+|.+++.+++|+.|+++-|+ +..+|..+ +-|+.||+.+|+..+ .+|..|+
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchh
Confidence 47888888888888888888888888888888888888888887 66677653 446777777665432 3444433
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.02 E-value=3e-10 Score=90.77 Aligned_cols=79 Identities=27% Similarity=0.341 Sum_probs=57.2
Q ss_pred CcChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFS 77 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~ 77 (119)
.+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|.. +++|+.|++++|...+.+|..++.
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 35777778888888888888777 67777788888888888887776677764 456777777777666677766664
Q ss_pred cCc
Q 046349 78 SYE 80 (119)
Q Consensus 78 l~~ 80 (119)
+..
T Consensus 259 l~~ 261 (968)
T PLN00113 259 LKN 261 (968)
T ss_pred CCC
Confidence 433
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.6e-09 Score=59.29 Aligned_cols=55 Identities=31% Similarity=0.329 Sum_probs=46.5
Q ss_pred CCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCC
Q 046349 11 STLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCT 66 (119)
Q Consensus 11 ~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~ 66 (119)
++|++|++++|.++.+|+ .|.++++|++|++++|++ ..+|. . +++|+.|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999998885 789999999999999994 55555 3 5789999999875
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.86 E-value=7.5e-10 Score=80.53 Aligned_cols=90 Identities=22% Similarity=0.256 Sum_probs=66.1
Q ss_pred hccCCCCCCEEeccCCCCccCChhhh-cCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCce
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPESIM-QLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEI 81 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~~~-~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l 81 (119)
+|+++..|+.|+++.|.++.+|.+.. ++.++..||+.+|+ +..+|+. +.+|++||+++ +.+..+|.+++++ ++
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HL 299 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccC-CccccCCcccccc-ee
Confidence 45555555555555555555565544 78899999999999 8899987 47899999997 6788899999977 55
Q ss_pred eecCccCCCcccccchHHHH
Q 046349 82 DLSCNFKLDRNEARGIVEDA 101 (119)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~ 101 (119)
.+. .+.+|....+....
T Consensus 300 ~~L---~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 300 KFL---ALEGNPLRTIRREI 316 (565)
T ss_pred eeh---hhcCCchHHHHHHH
Confidence 543 67888887776544
No 7
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.80 E-value=6.6e-09 Score=53.32 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=33.8
Q ss_pred CCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccC
Q 046349 11 STLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLL 51 (119)
Q Consensus 11 ~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp 51 (119)
++|++|++++|+|+.+|+.+++|++|+.|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 47999999999999999999999999999999998 44444
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.79 E-value=2.5e-10 Score=75.00 Aligned_cols=111 Identities=23% Similarity=0.256 Sum_probs=61.2
Q ss_pred cChhccCCCCCCEEeccCC-------------------------CCccCChhhhcCCCCCEEeccCcccccccCCC---C
Q 046349 3 LPESLGQLSTLEELFLVKN-------------------------NFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---P 54 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n-------------------------~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~ 54 (119)
+|..||.++.|+.||+++| .|..+|+.++++++|+.|.+..|. +-.+|.. +
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~l 172 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDL 172 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHH
Confidence 5666677777766666655 445555566666666666666666 4455654 3
Q ss_pred CCCceeeccCCCCccccCccccCcCceeecCccCCCcccccchHHHHHHHHHHHHHHHHHHhhh
Q 046349 55 CSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHWKEARE 118 (119)
Q Consensus 55 ~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~r~ 118 (119)
..|+.|++.+ +.+..+|+.++++.-+.-....++..|..-. ....+++.....++..+|.
T Consensus 173 t~lrelhiqg-nrl~vlppel~~l~l~~~k~v~r~E~NPwv~---pIaeQf~lG~shV~~yirt 232 (264)
T KOG0617|consen 173 TRLRELHIQG-NRLTVLPPELANLDLVGNKQVMRMEENPWVN---PIAEQFLLGISHVIDYIRT 232 (264)
T ss_pred HHHHHHhccc-ceeeecChhhhhhhhhhhHHHHhhhhCCCCC---hHHHHHHhhHHHHHHHHhh
Confidence 4566677776 4566677776643222222223344444332 2233344455566666554
No 9
>PLN03150 hypothetical protein; Provisional
Probab=98.76 E-value=1.3e-08 Score=78.51 Aligned_cols=85 Identities=21% Similarity=0.180 Sum_probs=69.0
Q ss_pred CCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCceeecCccC
Q 046349 13 LEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFK 88 (119)
Q Consensus 13 L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~~~~~ 88 (119)
++.|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|.. +.+|+.|++++|...+.+|..++++..|..+ +
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L---~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL---N 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE---E
Confidence 778999999999 89999999999999999999988999975 5789999999999999999988866554333 3
Q ss_pred CCcccccchHHH
Q 046349 89 LDRNEARGIVED 100 (119)
Q Consensus 89 l~~~~~~~~~~~ 100 (119)
+..|...+.++.
T Consensus 497 Ls~N~l~g~iP~ 508 (623)
T PLN03150 497 LNGNSLSGRVPA 508 (623)
T ss_pred CcCCcccccCCh
Confidence 444444444333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.72 E-value=2.9e-09 Score=81.51 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=65.3
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCccccC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIFS 77 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~~ 77 (119)
-||..|..+..|..||||+|++.++|..+...+++..|++|+|+ +.+||.. +..|-.||+++ +.+..+|+.+.+
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRR 171 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHH
Confidence 37899999999999999999999999999999999999999998 7888875 45677889987 678889988775
Q ss_pred cC
Q 046349 78 SY 79 (119)
Q Consensus 78 l~ 79 (119)
+.
T Consensus 172 L~ 173 (1255)
T KOG0444|consen 172 LS 173 (1255)
T ss_pred Hh
Confidence 43
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.63 E-value=9.5e-08 Score=78.16 Aligned_cols=82 Identities=27% Similarity=0.329 Sum_probs=38.2
Q ss_pred hhccCCCCCCEEeccCCC-CccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccc--cCc
Q 046349 5 ESLGQLSTLEELFLVKNN-FVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLI--FSS 78 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~-l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~--~~l 78 (119)
.++..+++|++++++++. +..+|. +..+++|+.|++++|..+..+|.. +.+|+.|++++|+.++.+|..+ .++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 334444444444444432 223432 444445555555554444444443 2445555555555555555432 244
Q ss_pred CceeecCcc
Q 046349 79 YEIDLSCNF 87 (119)
Q Consensus 79 ~~l~~~~~~ 87 (119)
..|.+.+|.
T Consensus 707 ~~L~Lsgc~ 715 (1153)
T PLN03210 707 YRLNLSGCS 715 (1153)
T ss_pred CEEeCCCCC
Confidence 445555553
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.54 E-value=2.5e-07 Score=75.73 Aligned_cols=60 Identities=30% Similarity=0.466 Sum_probs=37.3
Q ss_pred CcChhccCCCCCCEEeccCCC-CccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeec
Q 046349 2 ELPESLGQLSTLEELFLVKNN-FVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDA 62 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~-l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l 62 (119)
++|.+++++++|+.|++++|. +..+|..+ .+++|+.|++++|..+..+|..+.+++.|++
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~L 853 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNL 853 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeEC
Confidence 367777778888888887653 55777655 5667777777776555555543333333333
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.48 E-value=1.3e-08 Score=77.27 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=13.0
Q ss_pred cCCCcccccchHHHHHHHHHHHHH
Q 046349 87 FKLDRNEARGIVEDALQEIQLMAT 110 (119)
Q Consensus 87 ~~l~~~~~~~~~~~~~~~~~~l~~ 110 (119)
+++..|...++...+|..+ ++.+
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKE 443 (873)
T ss_pred ecCCCCcceeecccccccc-hhhh
Confidence 3555666666666666655 4433
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.47 E-value=1.9e-09 Score=78.48 Aligned_cols=90 Identities=33% Similarity=0.416 Sum_probs=55.9
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
++|++++.+..|+.++..+|+++++|+.++.+.+|..+++.+|+ +..+|+. +..|+.+++.. +.++++|+.++.+
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l 205 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGL 205 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcch
Confidence 45566666666666666666666666666666666666666666 4444443 45677787776 5788899988866
Q ss_pred CceeecCccCCCcccccc
Q 046349 79 YEIDLSCNFKLDRNEARG 96 (119)
Q Consensus 79 ~~l~~~~~~~l~~~~~~~ 96 (119)
..+ .|+.+.+|....
T Consensus 206 ~~L---~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 206 ESL---ELLYLRRNKIRF 220 (565)
T ss_pred hhh---HHHHhhhccccc
Confidence 554 334555554443
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=1.3e-07 Score=51.57 Aligned_cols=44 Identities=39% Similarity=0.653 Sum_probs=38.9
Q ss_pred CcCh-hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcc
Q 046349 2 ELPE-SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 2 ~lP~-~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~ 45 (119)
++|. .|.++++|++|++++|.++.+|+ .|.++++|++|++++|+
T Consensus 15 ~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 15 EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3554 67899999999999999997775 78999999999999997
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.37 E-value=3.1e-08 Score=76.03 Aligned_cols=77 Identities=27% Similarity=0.324 Sum_probs=56.0
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
-+|.++..+.+|..+|+|.|.+..+|+++..+.+|+.|++|+|++ ..+-.. ..+++.|+++.| -+..+|..++++
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL 290 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRN-QLTVLPDAVCKL 290 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccc-hhccchHHHhhh
Confidence 378888889999999999999988999888888999998888873 333322 345666777663 455566666654
Q ss_pred Cc
Q 046349 79 YE 80 (119)
Q Consensus 79 ~~ 80 (119)
..
T Consensus 291 ~k 292 (1255)
T KOG0444|consen 291 TK 292 (1255)
T ss_pred HH
Confidence 43
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.24 E-value=3.3e-07 Score=69.79 Aligned_cols=104 Identities=20% Similarity=0.232 Sum_probs=65.6
Q ss_pred ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc-cccCcCce
Q 046349 7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG-LIFSSYEI 81 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~-~~~~l~~l 81 (119)
|-.|.++++|+|..|+++.+-+ ++.+|++|+.|++|+|.+...-++. ..+|+.|+++.| .+..+++ .|. .|
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~---~L 340 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFR---VL 340 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHH---HH
Confidence 4567777777777777775554 6777788888888888744444443 356788888874 4445544 333 23
Q ss_pred eecCccCCCcccccchHHHHHHHHHHHHHHHHH
Q 046349 82 DLSCNFKLDRNEARGIVEDALQEIQLMATAHWK 114 (119)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (119)
..+.-+++..|+.+.+...++.++..+....+.
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 333334666777777777777777766654443
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.24 E-value=1.1e-07 Score=71.94 Aligned_cols=90 Identities=28% Similarity=0.432 Sum_probs=61.3
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCC--CCceeeccCCCCccccCccccCcC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPC--SLLELDAHHCTVLDTLSGLIFSSY 79 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~--~L~~L~l~~~~~~~~lp~~~~~l~ 79 (119)
.+|..++.+..|..||.+.|.+..+|..++++.+|+.|.+..|. +..+|+.+. .|..||++ ||.+..+|-.|.+++
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~ 234 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMR 234 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecc-cCceeecchhhhhhh
Confidence 46666776677777777777777777777777777777777776 445555543 36778888 477888999888776
Q ss_pred ceeecCccCCCcccccc
Q 046349 80 EIDLSCNFKLDRNEARG 96 (119)
Q Consensus 80 ~l~~~~~~~l~~~~~~~ 96 (119)
.|..+ .++.|...+
T Consensus 235 ~Lq~l---~LenNPLqS 248 (722)
T KOG0532|consen 235 HLQVL---QLENNPLQS 248 (722)
T ss_pred hheee---eeccCCCCC
Confidence 65443 566666554
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.23 E-value=2.9e-07 Score=67.08 Aligned_cols=105 Identities=23% Similarity=0.211 Sum_probs=74.5
Q ss_pred CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcc-cc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGL-IF 76 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~-~~ 76 (119)
+||..+. ..-..++|..|+|+.||+ +|+.+++|+.|||+.|.+...-|+. +.++..|.+.+++.+..+|.. |+
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 4555543 335778899999999987 7999999999999999854444444 456666777777888888874 45
Q ss_pred CcCceeecCccCCCcccccchHHHHHHHHHHHHHH
Q 046349 77 SSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATA 111 (119)
Q Consensus 77 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 111 (119)
.+..+..+ .+..+....+...+++.++.+...
T Consensus 138 gL~slqrL---llNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 138 GLSSLQRL---LLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred hHHHHHHH---hcChhhhcchhHHHHHHhhhcchh
Confidence 55444332 455666778888888888877443
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.20 E-value=2.1e-06 Score=67.79 Aligned_cols=62 Identities=29% Similarity=0.247 Sum_probs=27.2
Q ss_pred CCEEeccCcccccccCCCCCCCceeeccCCCCccccCccccCcCceeecCccCCCcccccchHHHHH
Q 046349 36 LKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDAL 102 (119)
Q Consensus 36 L~~L~l~~n~~~~~lp~~~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 102 (119)
|+.|++++|+ +..+|..+.+|+.|++++| .+..+|..++++..+. .+.+..|.+.+.....+
T Consensus 404 L~~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~---~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSET---TVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCc-CCCCCcchhhhhhhhhccC-cccccChHHhhccCCC---eEECCCCCCCchHHHHH
Confidence 4444444444 2334443344444555443 2335555555433322 23455555554443333
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.19 E-value=3.5e-06 Score=66.54 Aligned_cols=57 Identities=33% Similarity=0.497 Sum_probs=31.6
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeeccC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHH 64 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l~~ 64 (119)
++|..+. .+|+.|++++|+++.+|.. +++|++|++++|+ +..+|..+.+|+.|++++
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~lp~sL~~L~Ls~ 271 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVLPPGLLELSIFS 271 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCcccccceeeccC
Confidence 3565554 3566666666666666642 3566666666665 334554444454444444
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=2e-06 Score=56.66 Aligned_cols=60 Identities=30% Similarity=0.378 Sum_probs=23.8
Q ss_pred hcc-CCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCC----CCCCCceeeccCCCC
Q 046349 6 SLG-QLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLK----LPCSLLELDAHHCTV 67 (119)
Q Consensus 6 ~~~-~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~----~~~~L~~L~l~~~~~ 67 (119)
.++ .+.+|+.|++++|.++.++ .+..++.|+.|++++|+ +..+++ .+++|+.|++++|..
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~I 100 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNKI 100 (175)
T ss_dssp S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS--
T ss_pred chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCcC
Confidence 344 4678888888888888775 57778888888888888 445543 257888888887643
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.13 E-value=7.5e-06 Score=64.61 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=28.1
Q ss_pred CCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCccccCcccc-CcCceeec
Q 046349 12 TLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLDTLSGLIF-SSYEIDLS 84 (119)
Q Consensus 12 ~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~~lp~~~~-~l~~l~~~ 84 (119)
+|++|++++|.++.+|..+. .+|+.|++++|. +..+|.. ..+|+.|++++| .+..+|..+. +++.|++.
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECC
Confidence 34444444444444443322 134444444444 2233332 234555555543 2334554332 33344443
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=4.8e-06 Score=54.84 Aligned_cols=86 Identities=23% Similarity=0.257 Sum_probs=38.6
Q ss_pred hccCCCCCCEEeccCCCCccCChhh-hcCCCCCEEeccCcccccccCCC-----CCCCceeeccCCCCccccCc----cc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPESI-MQLSKLKFLNLSYSERLQSLLKL-----PCSLLELDAHHCTVLDTLSG----LI 75 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~~-~~l~~L~~L~l~~n~~~~~lp~~-----~~~L~~L~l~~~~~~~~lp~----~~ 75 (119)
.+..++.|+.|++++|.++.+++.+ ..+++|+.|++++|+ +..+-+. +++|+.|++.+|..... +. -+
T Consensus 59 ~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi 136 (175)
T PF14580_consen 59 GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVI 136 (175)
T ss_dssp T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHH
T ss_pred CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHH
Confidence 5678899999999999999998766 479999999999998 4444432 57899999999765432 21 12
Q ss_pred cCcCceeecCccCCCccc
Q 046349 76 FSSYEIDLSCNFKLDRNE 93 (119)
Q Consensus 76 ~~l~~l~~~~~~~l~~~~ 93 (119)
..++.|..++-..+....
T Consensus 137 ~~lP~Lk~LD~~~V~~~E 154 (175)
T PF14580_consen 137 YKLPSLKVLDGQDVTEEE 154 (175)
T ss_dssp HH-TT-SEETTEETTS-B
T ss_pred HHcChhheeCCEEccHHH
Confidence 344455555544444433
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.09 E-value=1.2e-06 Score=63.87 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=67.7
Q ss_pred hccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCccccCcCc
Q 046349 6 SLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIFSSYE 80 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~~l~~ 80 (119)
.|..+++|+.|++++|.++.+ +.+|.++.+++.|.+..|+ +..+... +.+|+.|++++|+.....|..|..+.
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~- 346 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF- 346 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccc-
Confidence 378899999999999999955 4589999999999999998 5555443 67899999999887777777777433
Q ss_pred eeecCccCCCcccccc
Q 046349 81 IDLSCNFKLDRNEARG 96 (119)
Q Consensus 81 l~~~~~~~l~~~~~~~ 96 (119)
.+..+++..|++..
T Consensus 347 --~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 347 --SLSTLNLLSNPFNC 360 (498)
T ss_pred --eeeeeehccCcccC
Confidence 33444666666653
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.07 E-value=9.9e-06 Score=63.96 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=58.9
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCccccCcccc-CcC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLDTLSGLIF-SSY 79 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~~lp~~~~-~l~ 79 (119)
++|..+. ++|+.|++++|.++.+|..+. .+|+.|++++|+ +..+|.. +.+|+.|++++|+ +..+|..+. +++
T Consensus 192 sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~-L~~LP~~l~s~L~ 265 (754)
T PRK15370 192 TIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLPDTIQEMELSINR-ITELPERLPSALQ 265 (754)
T ss_pred cCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhhccccEEECcCCc-cCcCChhHhCCCC
Confidence 4565553 579999999999999998765 589999999998 5678875 4679999999976 447787654 455
Q ss_pred ceeec
Q 046349 80 EIDLS 84 (119)
Q Consensus 80 ~l~~~ 84 (119)
.|++.
T Consensus 266 ~L~Ls 270 (754)
T PRK15370 266 SLDLF 270 (754)
T ss_pred EEECc
Confidence 55554
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.03 E-value=6.3e-07 Score=70.89 Aligned_cols=45 Identities=31% Similarity=0.392 Sum_probs=32.5
Q ss_pred ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLK 52 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~ 52 (119)
+-+.++|+.|+|++|.+..+|+ .+.++..|++|++|+|+ +..+|.
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~ 424 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPD 424 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhH
Confidence 4566777788888887777776 46777777777777777 556554
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.02 E-value=2.4e-06 Score=68.35 Aligned_cols=63 Identities=33% Similarity=0.458 Sum_probs=38.9
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHH 64 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~ 64 (119)
++|++|+++-+|++|++++..+..+|..++++++|.+|++.++..+..+|.. +.+|++|.+..
T Consensus 586 ~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 586 KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 3566666666666666666666666666666666666666666544445443 45566665543
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.93 E-value=1.8e-06 Score=68.40 Aligned_cols=84 Identities=31% Similarity=0.353 Sum_probs=59.9
Q ss_pred cChh-ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCc-cccCccc--c
Q 046349 3 LPES-LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVL-DTLSGLI--F 76 (119)
Q Consensus 3 lP~~-~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~-~~lp~~~--~ 76 (119)
+|.+ +.++..|+.|++|||+++.+|..+..+..|++|..-+|+ +..+|+. ++.|+.+|++.|++. ..+|... .
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSP 476 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence 5654 678888999999999999899888888888888888887 6677765 467888888876553 2333332 2
Q ss_pred CcCceeecCcc
Q 046349 77 SSYEIDLSCNF 87 (119)
Q Consensus 77 ~l~~l~~~~~~ 87 (119)
+++.|+++++.
T Consensus 477 ~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 477 NLKYLDLSGNT 487 (1081)
T ss_pred ccceeeccCCc
Confidence 45556665543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.75 E-value=1.3e-05 Score=58.41 Aligned_cols=69 Identities=32% Similarity=0.468 Sum_probs=38.3
Q ss_pred cChhccCCC-CCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCC---CCCCCceeeccCCCCccccCc
Q 046349 3 LPESLGQLS-TLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLK---LPCSLLELDAHHCTVLDTLSG 73 (119)
Q Consensus 3 lP~~~~~l~-~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~---~~~~L~~L~l~~~~~~~~lp~ 73 (119)
+|+..+.+. +|+.|++++|.+..+|..++.+++|+.|++++|+ +..+|. ....|+.|++++ +.+..+|.
T Consensus 131 i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~ 203 (394)
T COG4886 131 IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG-NKISDLPP 203 (394)
T ss_pred CccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccC-CccccCch
Confidence 444444453 5666666666666665556666666666666665 444444 234555666665 33444544
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.74 E-value=1.5e-05 Score=63.87 Aligned_cols=69 Identities=26% Similarity=0.397 Sum_probs=54.7
Q ss_pred ccCCCCCCEEeccCCC-CccCChhhhcCCCCCEEeccCcccccccCCCC---CCCceeeccCCCCccccCcccc
Q 046349 7 LGQLSTLEELFLVKNN-FVRIPESIMQLSKLKFLNLSYSERLQSLLKLP---CSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~-l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~---~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
|..++.|+.||+++|. +..+|..|+.|-+|++|++++.. ...+|..+ ..|.+|++..+.....+|....
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL 639 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhh
Confidence 6779999999999775 56999999999999999999998 67888874 5677888887665555554433
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.73 E-value=8.9e-06 Score=57.99 Aligned_cols=58 Identities=29% Similarity=0.242 Sum_probs=45.2
Q ss_pred cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349 8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT 66 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~ 66 (119)
.-++.|+.+|+|+|.|+.+.++.+-+++++.|++|+|. +..+... +++|+.||+++|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNL 340 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccch
Confidence 34577888999999999888888888999999999987 3344332 5788888888754
No 33
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.73 E-value=8.1e-06 Score=35.50 Aligned_cols=21 Identities=43% Similarity=0.485 Sum_probs=15.7
Q ss_pred CCCEEeccCCCCccCChhhhc
Q 046349 12 TLEELFLVKNNFVRIPESIMQ 32 (119)
Q Consensus 12 ~L~~L~ls~n~l~~lP~~~~~ 32 (119)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467888888888878776654
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.70 E-value=4.1e-06 Score=63.62 Aligned_cols=77 Identities=35% Similarity=0.402 Sum_probs=62.1
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCC--CCceeeccCCCCccccCccccCcC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPC--SLLELDAHHCTVLDTLSGLIFSSY 79 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~--~L~~L~l~~~~~~~~lp~~~~~l~ 79 (119)
++|..+..+..|+.+.+..|.+..+|+.+..+..|.++|++.|+ +..+|..+. -|+.|.+++ +.++.+|..++.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLP 166 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCcceeEEEec-CccccCCcccccch
Confidence 57778888888888888999998999999999999999999998 777887643 478888875 67888888888444
Q ss_pred c
Q 046349 80 E 80 (119)
Q Consensus 80 ~ 80 (119)
.
T Consensus 167 t 167 (722)
T KOG0532|consen 167 T 167 (722)
T ss_pred h
Confidence 3
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=7e-05 Score=55.40 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=48.9
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCccccCcccc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
+..+.++..|++++|.++.+|. -..+|+.|.+++|..+..+|+. +.+|+.|++.+|..+..+|..+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccccc
Confidence 3456888999999988888882 2346888888887767777764 46788888888766666766554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.57 E-value=2.3e-05 Score=55.94 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=34.2
Q ss_pred cChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCccc
Q 046349 3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSER 46 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~ 46 (119)
+..+..-.+.++.|++|+|.+..+-. +..+.+|+.||+|+|.+
T Consensus 299 iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 299 IDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLL 341 (490)
T ss_pred hhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchh
Confidence 44556667888999999999887654 88889999999999873
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.53 E-value=4.1e-05 Score=55.89 Aligned_cols=74 Identities=28% Similarity=0.350 Sum_probs=57.6
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFS 77 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~ 77 (119)
++|..++.+++|+.|++++|.+..+|...+.++.|+.|++++|+ +..+|.. +..|+.+.+++|. ....+..+.+
T Consensus 154 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~ 230 (394)
T COG4886 154 SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSN 230 (394)
T ss_pred hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhh
Confidence 35567899999999999999999999888899999999999998 7778774 3458888888753 3334443443
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.50 E-value=5.8e-05 Score=53.14 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=16.0
Q ss_pred CCCCEEeccCCCCc-----cCChhhhcCCCCCEEeccCcc
Q 046349 11 STLEELFLVKNNFV-----RIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 11 ~~L~~L~ls~n~l~-----~lP~~~~~l~~L~~L~l~~n~ 45 (119)
++|+.|++++|.++ .++..+..+.+|+.|++++|.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 44555555555444 122233444445555555544
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.45 E-value=6.4e-05 Score=52.94 Aligned_cols=42 Identities=24% Similarity=0.155 Sum_probs=24.9
Q ss_pred hhccCCCCCCEEeccCCCCc-cCChhhhcCCC---CCEEeccCccc
Q 046349 5 ESLGQLSTLEELFLVKNNFV-RIPESIMQLSK---LKFLNLSYSER 46 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~---L~~L~l~~n~~ 46 (119)
..++.+++|+.|++++|.+. ..+..+..+.. |+.|++++|.+
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 34555666777777766665 44444544444 66666666654
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.44 E-value=0.00013 Score=37.17 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=24.0
Q ss_pred CcChhccCCCCCCEEeccCCCCccCCh
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPE 28 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~ 28 (119)
.+|+.+++|++|++|++++|.++.+|+
T Consensus 15 ~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 15 DLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 578889999999999999999997764
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=1.5e-05 Score=50.82 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=53.4
Q ss_pred cCCCCCCEEeccCCCCccCChhhhcC-CCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCceee
Q 046349 8 GQLSTLEELFLVKNNFVRIPESIMQL-SKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEIDL 83 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~~~~~l-~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~ 83 (119)
.....|...++++|.|+.+|+.+... +-++.+++++|+ +..+|.. ++.|+.+++.. +.+...|.-+..+.+++.
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHH
Confidence 44556777788888888888877554 478888888888 7778875 46788888886 445566766665555544
Q ss_pred c
Q 046349 84 S 84 (119)
Q Consensus 84 ~ 84 (119)
+
T Consensus 128 L 128 (177)
T KOG4579|consen 128 L 128 (177)
T ss_pred h
Confidence 4
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.22 E-value=0.00065 Score=50.41 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=28.0
Q ss_pred CCCEEeccCcccccccCC-CCCCCceeeccCCC------CccccCccccCcCceeecCccCCCcccc
Q 046349 35 KLKFLNLSYSERLQSLLK-LPCSLLELDAHHCT------VLDTLSGLIFSSYEIDLSCNFKLDRNEA 94 (119)
Q Consensus 35 ~L~~L~l~~n~~~~~lp~-~~~~L~~L~l~~~~------~~~~lp~~~~~l~~l~~~~~~~l~~~~~ 94 (119)
+|++|++++|... .+|+ .+.+|+.|+++.+. ....+|+.+ .+.+.+|+.++.+.+
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP~nl----~L~f~n~lkL~~~~f 218 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLPESLQSITLHIEQKTTWNISFEGFPDGL----DIDLQNSVLLSPDVF 218 (426)
T ss_pred cccEEEecCCCcc-cCcccccccCcEEEecccccccccCccccccccc----EechhhhcccCHHHh
Confidence 4566666666533 2333 34566666665432 122344333 466666666655443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.18 E-value=0.00034 Score=51.74 Aligned_cols=59 Identities=31% Similarity=0.392 Sum_probs=46.0
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT 66 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~ 66 (119)
++.+++|+.+++.+|.|..+...+..+.+|++|++++|. ++.+... +..|+.|++.+|.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCc
Confidence 677888899999999988777668888899999999998 4455443 5668888888854
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=5.4e-05 Score=48.32 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=52.1
Q ss_pred CcChhcc-CCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCC---CCCceeeccCCCCccccCcc
Q 046349 2 ELPESLG-QLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLP---CSLLELDAHHCTVLDTLSGL 74 (119)
Q Consensus 2 ~lP~~~~-~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~---~~L~~L~l~~~~~~~~lp~~ 74 (119)
.+|+.|. ..+.++.+++++|.+..+|.++..++.|+.++++.|. +...|..+ .++-.|+..+ +....+|-.
T Consensus 67 ~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 67 KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence 4666664 3457899999999999999999999999999999998 55666653 3444555555 344555543
No 45
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=97.01 E-value=0.00042 Score=28.06 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=7.8
Q ss_pred CCCEEeccCCCCccCC
Q 046349 12 TLEELFLVKNNFVRIP 27 (119)
Q Consensus 12 ~L~~L~ls~n~l~~lP 27 (119)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.82 E-value=0.00027 Score=55.71 Aligned_cols=64 Identities=41% Similarity=0.585 Sum_probs=50.4
Q ss_pred hhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-C--CCCceeeccCCCCcccc
Q 046349 5 ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-P--CSLLELDAHHCTVLDTL 71 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-~--~~L~~L~l~~~~~~~~l 71 (119)
.++.-++.|+.|||++|+++.+- .+..+.+|++||+++|. +..+|.. + ..|..|.+.+| .+.++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN-~l~tL 247 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNN-ALTTL 247 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeeccc-HHHhh
Confidence 44566788999999999999765 79999999999999998 7788875 2 34888888874 44444
No 47
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.71 E-value=0.0019 Score=28.82 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=16.9
Q ss_pred CCCCCEEeccCCCCccCChhh
Q 046349 10 LSTLEELFLVKNNFVRIPESI 30 (119)
Q Consensus 10 l~~L~~L~ls~n~l~~lP~~~ 30 (119)
+++|++|++++|.++.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467889999999988888753
No 48
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.71 E-value=0.0019 Score=28.82 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=16.9
Q ss_pred CCCCCEEeccCCCCccCChhh
Q 046349 10 LSTLEELFLVKNNFVRIPESI 30 (119)
Q Consensus 10 l~~L~~L~ls~n~l~~lP~~~ 30 (119)
+++|++|++++|.++.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467889999999988888753
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.0013 Score=45.67 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=17.6
Q ss_pred CCCCCCEEeccCC--CCc-cCChhhhcCCCCCEEeccCcc
Q 046349 9 QLSTLEELFLVKN--NFV-RIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 9 ~l~~L~~L~ls~n--~l~-~lP~~~~~l~~L~~L~l~~n~ 45 (119)
.+++|+.|.++.| .+. .++.....+++|+++++++|+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3445555555555 333 333333444555555555554
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.60 E-value=0.00075 Score=49.92 Aligned_cols=60 Identities=30% Similarity=0.277 Sum_probs=50.0
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVL 68 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~ 68 (119)
+..+++|++|++++|.|+.+. .+..++.|+.|++++|. +..+... +..|+.+++++|...
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred hhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccCCccchhhhcccCCcchhh
Confidence 667999999999999999775 47888889999999998 6677665 678999999986543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.99 E-value=0.0015 Score=51.75 Aligned_cols=58 Identities=31% Similarity=0.380 Sum_probs=44.2
Q ss_pred hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHC 65 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~ 65 (119)
.+..+++|++||++.|++..+|. ....+. |+.|.+++|. +..+-+. +.+|+.||+++|
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhhhHHhhhhhhccchhHh
Confidence 46678999999999999998886 344454 8888888887 5555543 677888888874
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.99 E-value=0.0045 Score=48.93 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=38.8
Q ss_pred cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCccccc--ccCCC--CCCCceeeccC
Q 046349 8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQ--SLLKL--PCSLLELDAHH 64 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~--~lp~~--~~~L~~L~l~~ 64 (119)
.++++|..||+|+.+++.+ .++++|++|+.|.+.+=.+.. .+-+. +.+|+.||++.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 4678888888888888866 678888888887776654321 11111 57788888885
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0046 Score=46.13 Aligned_cols=62 Identities=26% Similarity=0.219 Sum_probs=42.8
Q ss_pred hccCCCCCCEEeccCCCCccCC---hhhhcCCCCCEEeccCcccccccCC----CCCCCceeeccCCCC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIP---ESIMQLSKLKFLNLSYSERLQSLLK----LPCSLLELDAHHCTV 67 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP---~~~~~l~~L~~L~l~~n~~~~~lp~----~~~~L~~L~l~~~~~ 67 (119)
....|++++.|||++|-|..+- .-...+++|+.|+++.|++...... .++.++.|.++.|.+
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl 209 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL 209 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC
Confidence 3567888999999999877322 3457889999999999985433222 145677777777655
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.66 E-value=0.017 Score=39.22 Aligned_cols=58 Identities=29% Similarity=0.278 Sum_probs=30.7
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcC-CCCCEEeccCcccccccCCC-----CCCCceeeccCC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQL-SKLKFLNLSYSERLQSLLKL-----PCSLLELDAHHC 65 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l-~~L~~L~l~~n~~~~~lp~~-----~~~L~~L~l~~~ 65 (119)
+..+..|.+|.+++|.|+.|-+.+..+ ++|..|.+.+|. +..+-+. ++.|++|.+-+|
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCC
Confidence 445556666666666666555444443 346666666665 2232221 345666666554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.35 E-value=0.035 Score=37.71 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=44.1
Q ss_pred CCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCC
Q 046349 10 LSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTV 67 (119)
Q Consensus 10 l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~ 67 (119)
+.+...+|+++|.+..++ .+.++..|.+|.+.+|++...=|.. +++|..|.+.+|+.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 346788999999988665 4788999999999999954443443 57799999998654
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.33 E-value=0.021 Score=39.78 Aligned_cols=79 Identities=24% Similarity=0.181 Sum_probs=50.1
Q ss_pred cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc--cccccCCC---CCCCceeeccCCCC--ccccCc--cccCc
Q 046349 8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE--RLQSLLKL---PCSLLELDAHHCTV--LDTLSG--LIFSS 78 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~--~~~~lp~~---~~~L~~L~l~~~~~--~~~lp~--~~~~l 78 (119)
..+..|+.+.+.+..++++- .+-.|++|+.|.++.|. ..+.++.. .++|+++++++|.. +.++++ .+.++
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34566777777777766432 35568899999999994 33444332 48899999999754 233332 23344
Q ss_pred CceeecCcc
Q 046349 79 YEIDLSCNF 87 (119)
Q Consensus 79 ~~l~~~~~~ 87 (119)
..|.+.+|-
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 456555553
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.0015 Score=46.38 Aligned_cols=65 Identities=23% Similarity=0.161 Sum_probs=44.0
Q ss_pred cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-----CCCCceeeccCCCCccccCcc
Q 046349 8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-----PCSLLELDAHHCTVLDTLSGL 74 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-----~~~L~~L~l~~~~~~~~lp~~ 74 (119)
..|+.|+.|.||-|+|+.+- .+..+++|++|.|..|. +..+.+. +++|+.|.+..|...+.-+..
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQN 107 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchh
Confidence 45777888888888887664 47777888888887776 3344332 467777777776666655543
No 58
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=94.76 E-value=0.02 Score=25.70 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=13.6
Q ss_pred CCCCEEeccCCCCccCCh
Q 046349 11 STLEELFLVKNNFVRIPE 28 (119)
Q Consensus 11 ~~L~~L~ls~n~l~~lP~ 28 (119)
.+|++|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357788888888887775
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.42 E-value=0.018 Score=41.91 Aligned_cols=62 Identities=24% Similarity=0.210 Sum_probs=36.8
Q ss_pred hccCCCCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCccccc--------ccCCCCCCCceeeccCCCC
Q 046349 6 SLGQLSTLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSERLQ--------SLLKLPCSLLELDAHHCTV 67 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~~~~--------~lp~~~~~L~~L~l~~~~~ 67 (119)
.+..+++|+.||+.+|.|+. +-..+..+++|+.+++++|.+.. .+-...++|+.+.+.+|..
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 35567777777777777661 23345666677777777775311 1122245677777777654
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.0031 Score=44.83 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=25.0
Q ss_pred CCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccC
Q 046349 11 STLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHH 64 (119)
Q Consensus 11 ~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~ 64 (119)
.+.+.|+..|+.+..|. .+.+|+.|+.|.|+-|+ +..+-.. ...|+.|++-.
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRK 72 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHh
Confidence 34445555555555332 24455566666666655 2233222 34455555544
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=0.035 Score=40.03 Aligned_cols=57 Identities=26% Similarity=0.155 Sum_probs=40.6
Q ss_pred CCCCCCEEeccCCCCcc---CChhhhcCCCCCEEeccCcccccc---cCCCCCCCceeeccCC
Q 046349 9 QLSTLEELFLVKNNFVR---IPESIMQLSKLKFLNLSYSERLQS---LLKLPCSLLELDAHHC 65 (119)
Q Consensus 9 ~l~~L~~L~ls~n~l~~---lP~~~~~l~~L~~L~l~~n~~~~~---lp~~~~~L~~L~l~~~ 65 (119)
.++.++.+||.+|.|+. +-.-+.+|+.|+.|+++.|.+... +|.-..+|+.+.+.+-
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 35678889999999884 334567899999999999986443 4422356777777653
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.006 Score=43.80 Aligned_cols=79 Identities=22% Similarity=0.206 Sum_probs=54.9
Q ss_pred CCCEEeccCCCCc--cCChhhhcCCCCCEEeccCcccccccCCCC---CCCceeeccCCCCccccC-----ccccCcCce
Q 046349 12 TLEELFLVKNNFV--RIPESIMQLSKLKFLNLSYSERLQSLLKLP---CSLLELDAHHCTVLDTLS-----GLIFSSYEI 81 (119)
Q Consensus 12 ~L~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~---~~L~~L~l~~~~~~~~lp-----~~~~~l~~l 81 (119)
.|+++|||+..++ .+-.-++++++|+.|.+.++++...+-..+ .+|+.++++.|+...... .+..++..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4889999998887 566677889999999999998654443332 568899998887654432 222345567
Q ss_pred eecCccCCC
Q 046349 82 DLSCNFKLD 90 (119)
Q Consensus 82 ~~~~~~~l~ 90 (119)
++..|....
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 777775443
No 63
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.033 Score=41.73 Aligned_cols=79 Identities=18% Similarity=0.075 Sum_probs=56.2
Q ss_pred cCCCCCCEEeccCCCCccCC--hhhhcCCCCCEEeccCcccccccC-----CCCCCCceeeccCCCCcccc----Ccccc
Q 046349 8 GQLSTLEELFLVKNNFVRIP--ESIMQLSKLKFLNLSYSERLQSLL-----KLPCSLLELDAHHCTVLDTL----SGLIF 76 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP--~~~~~l~~L~~L~l~~n~~~~~lp-----~~~~~L~~L~l~~~~~~~~l----p~~~~ 76 (119)
.++++|+...|.+..+...+ .....+++.+.||++.|-+..--| +-+++|+.|+++.|...--. -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35788999999988887666 367889999999999996533222 22678999999987543221 22445
Q ss_pred CcCceeecCc
Q 046349 77 SSYEIDLSCN 86 (119)
Q Consensus 77 ~l~~l~~~~~ 86 (119)
.++.|.+..|
T Consensus 198 ~lK~L~l~~C 207 (505)
T KOG3207|consen 198 HLKQLVLNSC 207 (505)
T ss_pred hhheEEeccC
Confidence 6677777776
No 64
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=92.90 E-value=0.098 Score=23.46 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=10.1
Q ss_pred CCCCCEEeccCCCCcc
Q 046349 10 LSTLEELFLVKNNFVR 25 (119)
Q Consensus 10 l~~L~~L~ls~n~l~~ 25 (119)
+++|+.|+++.|.|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3566677777776653
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.06 Score=38.86 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=40.4
Q ss_pred cCCCCCCEEeccCCC-Cc-cCChhhhcCCCCCEEeccCcccccccCCC------CCCCceeeccCC
Q 046349 8 GQLSTLEELFLVKNN-FV-RIPESIMQLSKLKFLNLSYSERLQSLLKL------PCSLLELDAHHC 65 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~-l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~------~~~L~~L~l~~~ 65 (119)
..+++|..||||+|. ++ .+-..|.++..|++|.++.|. +.+|.. .++|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 357788888888764 44 444567888888888888885 344542 467888888876
No 66
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.14 E-value=0.042 Score=23.82 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=7.6
Q ss_pred CCCCEEeccCCCCc
Q 046349 11 STLEELFLVKNNFV 24 (119)
Q Consensus 11 ~~L~~L~ls~n~l~ 24 (119)
++|++|++++|.|.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666655
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.23 E-value=0.088 Score=41.86 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCCCCEEeccCCCCc--cCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeecc
Q 046349 10 LSTLEELFLVKNNFV--RIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAH 63 (119)
Q Consensus 10 l~~L~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~ 63 (119)
+++|+.|.+++-.+. .+-.-..++++|..||+|+.+ +..+-+. +.+|+.|.+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMR 203 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhcc
Confidence 566677766665554 333445566777777777766 3333221 3445544444
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.47 E-value=0.38 Score=34.46 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=37.6
Q ss_pred hccCCCCCCEEeccCCCCc-cCChh----hhcCCCCCEEeccCcccccccCC
Q 046349 6 SLGQLSTLEELFLVKNNFV-RIPES----IMQLSKLKFLNLSYSERLQSLLK 52 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~-~lP~~----~~~l~~L~~L~l~~n~~~~~lp~ 52 (119)
.+-+|++|+..++|.|.|. ..|+. |++-+.|.+|.+++|. +|.+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG 137 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAG 137 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccch
Confidence 4567899999999999998 77764 5677899999999998 666654
No 69
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.10 E-value=0.38 Score=21.68 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=9.9
Q ss_pred CCCCEEeccCCCCc
Q 046349 11 STLEELFLVKNNFV 24 (119)
Q Consensus 11 ~~L~~L~ls~n~l~ 24 (119)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777765
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.93 E-value=0.34 Score=35.15 Aligned_cols=38 Identities=32% Similarity=0.340 Sum_probs=23.5
Q ss_pred ccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCc
Q 046349 7 LGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYS 44 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n 44 (119)
+.+|+.|+.|+++.|.+. .|-..-..+.+|+.|-+.+.
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 467899999999999876 22111133445555555544
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=82.20 E-value=2.4 Score=31.26 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=7.7
Q ss_pred hhcCCCCCEEeccCcc
Q 046349 30 IMQLSKLKFLNLSYSE 45 (119)
Q Consensus 30 ~~~l~~L~~L~l~~n~ 45 (119)
+..+++|+.||+.+|-
T Consensus 209 l~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNT 224 (382)
T ss_pred HHhCCcceeeecccch
Confidence 3444455555555443
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.37 E-value=0.042 Score=38.35 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=49.2
Q ss_pred hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCC---CceeeccCCCCccccCccccCcCc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCS---LLELDAHHCTVLDTLSGLIFSSYE 80 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~---L~~L~l~~~~~~~~lp~~~~~l~~ 80 (119)
++.....-..||++.|.+..+-..+..++.+..|+++.|. ...+|..... +..++... +.....|.+++....
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCC
Confidence 3455666777888888777777777777888888888777 6667766433 44455544 556777777775544
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.37 E-value=6.4 Score=23.60 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=16.2
Q ss_pred ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYS 44 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n 44 (119)
|.++++|+.+.+.. .+..+++ .|..+++|+.+.+..+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc
Confidence 45555666666653 3444543 4555656666666553
No 74
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=76.01 E-value=2.2 Score=38.99 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=23.0
Q ss_pred eccCCCCccCCh-hhhcCCCCCEEeccCccc
Q 046349 17 FLVKNNFVRIPE-SIMQLSKLKFLNLSYSER 46 (119)
Q Consensus 17 ~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~ 46 (119)
||++|+|+.||+ .|..+.+|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 577888887776 567788888888888765
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.93 E-value=0.25 Score=34.59 Aligned_cols=58 Identities=16% Similarity=0.035 Sum_probs=32.5
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCC---CCCceeeccCC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLP---CSLLELDAHHC 65 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~---~~L~~L~l~~~ 65 (119)
+..++.+..|+++.|.+.-+|..++.+..+..+++..|. ....|.+. +.+++++..++
T Consensus 61 ~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhccC
Confidence 334455566666666666666666666666666665554 55555542 33444444443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.02 E-value=1.5 Score=29.85 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=37.6
Q ss_pred CCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccc-----cccCCCCCCCceeeccCCCCccc
Q 046349 12 TLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERL-----QSLLKLPCSLLELDAHHCTVLDT 70 (119)
Q Consensus 12 ~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~-----~~lp~~~~~L~~L~l~~~~~~~~ 70 (119)
.++.+|.++..|...- +.+..++.++.|.+.+|+.. +.+-...++|+.|++++|..++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 3667777777766221 34566777777777777532 22333457899999998876543
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=73.01 E-value=2.8 Score=30.23 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=11.6
Q ss_pred cCCCCCCEEeccCCCCc
Q 046349 8 GQLSTLEELFLVKNNFV 24 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~ 24 (119)
..+..+..+++|+|.|.
T Consensus 27 ~~~d~~~evdLSGNtig 43 (388)
T COG5238 27 EMMDELVEVDLSGNTIG 43 (388)
T ss_pred HhhcceeEEeccCCccc
Confidence 34566777788887665
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=67.47 E-value=5.5 Score=17.24 Aligned_cols=11 Identities=36% Similarity=0.365 Sum_probs=5.4
Q ss_pred CCCEEeccCcc
Q 046349 35 KLKFLNLSYSE 45 (119)
Q Consensus 35 ~L~~L~l~~n~ 45 (119)
+|+.|++++|.
T Consensus 3 ~L~~L~l~~C~ 13 (26)
T smart00367 3 NLRELDLSGCT 13 (26)
T ss_pred CCCEeCCCCCC
Confidence 44555555543
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.97 E-value=6.3 Score=30.80 Aligned_cols=63 Identities=24% Similarity=0.200 Sum_probs=39.2
Q ss_pred CCCCCCEEeccCCCCccCCh---hhhcCCCCCEEeccCccc-ccccCCC----CCCCceeeccCCCCcccc
Q 046349 9 QLSTLEELFLVKNNFVRIPE---SIMQLSKLKFLNLSYSER-LQSLLKL----PCSLLELDAHHCTVLDTL 71 (119)
Q Consensus 9 ~l~~L~~L~ls~n~l~~lP~---~~~~l~~L~~L~l~~n~~-~~~lp~~----~~~L~~L~l~~~~~~~~l 71 (119)
+.+.+..++|++|++..+-. --...++|..|+|++|.. ...-++. -..|+.|.+.||...+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 45567778889998875432 234567899999999821 2222221 123777888887665544
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=27.83 E-value=52 Score=24.27 Aligned_cols=61 Identities=28% Similarity=0.250 Sum_probs=33.6
Q ss_pred cCCCCCCEEeccCCC-CccC-Chhh-hcCCCCCEEeccCcccc-----cccCCCCCCCceeeccCCCCc
Q 046349 8 GQLSTLEELFLVKNN-FVRI-PESI-MQLSKLKFLNLSYSERL-----QSLLKLPCSLLELDAHHCTVL 68 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~-l~~l-P~~~-~~l~~L~~L~l~~n~~~-----~~lp~~~~~L~~L~l~~~~~~ 68 (119)
..+.+|+.+++++.. ++.. =..+ ..+++|+.|.+.+|..+ ..+-...++|+.|++++|...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 345677778877776 4411 1222 23677888776666421 001111356788888776553
Done!