Query 046349
Match_columns 119
No_of_seqs 219 out of 1949
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 19:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.4 3.2E-12 1.1E-16 90.0 9.8 86 2-87 197-288 (328)
2 4fcg_A Uncharacterized protein 99.3 6.1E-12 2.1E-16 88.5 8.4 83 2-84 220-306 (328)
3 3rgz_A Protein brassinosteroid 99.3 3.9E-12 1.3E-16 98.2 7.8 71 3-73 648-722 (768)
4 4b8c_D Glucose-repressible alc 99.3 1.6E-11 5.3E-16 94.7 10.2 99 2-105 238-339 (727)
5 3rgz_A Protein brassinosteroid 99.3 4.6E-12 1.6E-16 97.8 7.0 78 3-80 624-705 (768)
6 1w8a_A SLIT protein; signaling 99.2 3.8E-11 1.3E-15 78.5 8.3 87 7-96 50-140 (192)
7 1ogq_A PGIP-2, polygalacturona 99.2 1.8E-11 6.1E-16 85.5 6.3 74 3-76 93-170 (313)
8 1dce_A Protein (RAB geranylger 99.2 4.7E-11 1.6E-15 89.8 8.3 91 2-97 455-548 (567)
9 1ogq_A PGIP-2, polygalacturona 99.2 2.1E-11 7.3E-16 85.1 5.1 79 2-80 67-150 (313)
10 2je0_A Acidic leucine-rich nuc 99.2 1.8E-11 6.2E-16 76.7 4.3 92 2-97 33-128 (149)
11 4eco_A Uncharacterized protein 99.2 5.9E-11 2E-15 90.0 7.5 55 26-80 198-274 (636)
12 2wfh_A SLIT homolog 2 protein 99.2 1.8E-10 6E-15 75.5 8.8 90 2-95 45-139 (193)
13 2v70_A SLIT-2, SLIT homolog 2 99.2 1.7E-10 5.7E-15 77.0 8.8 87 6-95 76-166 (220)
14 2wfh_A SLIT homolog 2 protein 99.2 2.2E-10 7.5E-15 75.1 8.8 78 2-81 24-104 (193)
15 3g39_A Variable lymphocyte rec 99.2 2.1E-10 7.1E-15 73.7 8.5 87 2-95 23-115 (170)
16 4eco_A Uncharacterized protein 99.1 4.7E-11 1.6E-15 90.6 5.7 75 3-77 198-297 (636)
17 2v70_A SLIT-2, SLIT homolog 2 99.1 1.9E-11 6.6E-16 81.6 3.0 75 6-80 52-130 (220)
18 2v9t_B SLIT homolog 2 protein 99.1 2.2E-10 7.4E-15 76.4 8.0 39 7-45 52-91 (220)
19 2r9u_A Variable lymphocyte rec 99.1 2.9E-10 1E-14 73.4 8.4 76 2-81 26-107 (174)
20 2v9t_B SLIT homolog 2 protein 99.1 2.8E-10 9.5E-15 75.9 8.5 89 4-95 73-165 (220)
21 1w8a_A SLIT protein; signaling 99.1 3.2E-10 1.1E-14 74.1 8.0 77 2-80 22-103 (192)
22 2ifg_A High affinity nerve gro 99.1 3.1E-10 1.1E-14 79.9 8.2 73 2-76 23-100 (347)
23 3e6j_A Variable lymphocyte rec 99.1 5.1E-10 1.8E-14 75.0 8.3 71 4-76 57-132 (229)
24 3vq2_A TLR4, TOLL-like recepto 99.1 1.9E-10 6.6E-15 86.0 6.7 78 4-81 73-155 (606)
25 4g8a_A TOLL-like receptor 4; l 99.1 2.8E-10 9.6E-15 84.9 7.4 61 6-67 71-136 (635)
26 4b8c_D Glucose-repressible alc 99.1 1E-10 3.6E-15 90.1 5.1 74 2-76 261-337 (727)
27 4ecn_A Leucine-rich repeat pro 99.1 1.3E-10 4.5E-15 91.2 5.3 74 3-76 440-538 (876)
28 2o6r_A Variable lymphocyte rec 99.0 3.4E-09 1.2E-13 68.0 10.7 92 3-98 43-140 (177)
29 2ell_A Acidic leucine-rich nuc 99.0 6.3E-11 2.2E-15 75.6 2.2 65 2-67 40-107 (168)
30 4g8a_A TOLL-like receptor 4; l 99.0 7.3E-10 2.5E-14 82.6 7.9 76 3-78 486-565 (635)
31 1ozn_A Reticulon 4 receptor; N 99.0 4.1E-10 1.4E-14 77.2 5.8 70 6-76 124-198 (285)
32 3e6j_A Variable lymphocyte rec 99.0 1.6E-09 5.4E-14 72.6 8.5 78 2-81 78-161 (229)
33 3m19_A Variable lymphocyte rec 99.0 2.4E-10 8.1E-15 77.4 4.0 40 6-45 54-94 (251)
34 4ezg_A Putative uncharacterize 99.0 9.2E-10 3.1E-14 72.0 6.7 67 6-72 83-153 (197)
35 3v47_A TOLL-like receptor 5B a 99.0 1.6E-10 5.5E-15 83.7 3.2 61 6-66 318-382 (455)
36 4ecn_A Leucine-rich repeat pro 99.0 2.1E-09 7.3E-14 84.4 9.6 84 2-86 742-837 (876)
37 1dce_A Protein (RAB geranylger 99.0 1.4E-09 4.7E-14 81.9 8.1 71 2-74 477-551 (567)
38 3m19_A Variable lymphocyte rec 99.0 3.3E-10 1.1E-14 76.6 4.0 60 7-67 103-167 (251)
39 1p9a_G Platelet glycoprotein I 99.0 2.4E-09 8.1E-14 74.1 8.4 63 3-66 92-159 (290)
40 4ezg_A Putative uncharacterize 99.0 2.5E-09 8.4E-14 69.9 7.6 69 3-72 104-175 (197)
41 3rfs_A Internalin B, repeat mo 99.0 4.3E-10 1.5E-14 76.9 4.0 38 8-45 130-168 (272)
42 2o6s_A Variable lymphocyte rec 99.0 4.2E-09 1.4E-13 69.2 8.6 39 7-45 48-87 (208)
43 2z7x_B TOLL-like receptor 1, v 99.0 1.2E-09 4.1E-14 80.5 6.5 75 5-80 39-116 (520)
44 2o6s_A Variable lymphocyte rec 98.9 4.4E-09 1.5E-13 69.1 8.4 83 3-86 67-158 (208)
45 2z62_A TOLL-like receptor 4, v 98.9 1.8E-09 6.3E-14 73.7 6.5 72 7-78 72-148 (276)
46 2z7x_B TOLL-like receptor 1, v 98.9 2.6E-09 8.9E-14 78.7 7.6 49 3-51 340-391 (520)
47 2r9u_A Variable lymphocyte rec 98.9 3.5E-09 1.2E-13 68.2 7.1 64 4-68 50-118 (174)
48 2z80_A TOLL-like receptor 2, v 98.9 1.2E-09 4.1E-14 77.1 5.3 74 4-78 93-173 (353)
49 2z63_A TOLL-like receptor 4, v 98.9 1.8E-09 6.3E-14 80.0 6.4 74 6-80 71-150 (570)
50 2id5_A Lingo-1, leucine rich r 98.9 1E-09 3.4E-14 80.2 4.7 72 4-76 49-125 (477)
51 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 3.3E-09 1.1E-13 79.0 7.6 74 5-79 70-146 (562)
52 1wwl_A Monocyte differentiatio 98.9 2.2E-09 7.6E-14 74.7 6.3 68 3-70 111-188 (312)
53 3v47_A TOLL-like receptor 5B a 98.9 5.3E-09 1.8E-13 75.7 8.5 77 3-79 291-371 (455)
54 1ziw_A TOLL-like receptor 3; i 98.9 3.3E-09 1.1E-13 80.4 7.7 70 6-75 68-141 (680)
55 1p9a_G Platelet glycoprotein I 98.9 4.2E-09 1.4E-13 72.9 7.5 65 8-73 74-141 (290)
56 2z66_A Variable lymphocyte rec 98.9 5.1E-09 1.7E-13 72.4 7.9 76 3-78 167-246 (306)
57 3t6q_A CD180 antigen; protein- 98.9 4.6E-09 1.6E-13 78.5 8.1 66 4-69 50-119 (606)
58 1a9n_A U2A', U2A'; complex (nu 98.9 2.3E-09 8E-14 68.9 5.6 59 12-73 43-105 (176)
59 2je0_A Acidic leucine-rich nuc 98.9 1.7E-09 5.8E-14 67.6 4.8 75 5-81 58-142 (149)
60 3vq2_A TLR4, TOLL-like recepto 98.9 2.4E-09 8.1E-14 80.1 6.4 72 4-76 466-541 (606)
61 3rfs_A Internalin B, repeat mo 98.9 8.5E-09 2.9E-13 70.5 8.6 81 5-85 103-190 (272)
62 3g39_A Variable lymphocyte rec 98.9 5.9E-09 2E-13 66.9 7.2 65 4-69 47-116 (170)
63 2xot_A Amphoterin-induced prot 98.9 4.1E-09 1.4E-13 74.8 7.0 66 7-73 84-153 (361)
64 2ell_A Acidic leucine-rich nuc 98.9 4.9E-09 1.7E-13 66.7 6.5 75 5-81 65-149 (168)
65 1ozn_A Reticulon 4 receptor; N 98.9 9.8E-09 3.3E-13 70.3 8.2 16 30-45 101-116 (285)
66 2o6q_A Variable lymphocyte rec 98.9 1E-08 3.5E-13 69.9 8.2 61 6-67 56-121 (270)
67 2o6r_A Variable lymphocyte rec 98.9 1.5E-08 5.2E-13 64.9 8.5 82 2-86 21-110 (177)
68 2z81_A CD282 antigen, TOLL-lik 98.9 9.8E-09 3.4E-13 75.9 8.5 61 33-97 450-512 (549)
69 2o6q_A Variable lymphocyte rec 98.9 1.4E-08 4.6E-13 69.3 8.6 60 7-67 129-193 (270)
70 3oja_B Anopheles plasmodium-re 98.9 9.1E-09 3.1E-13 77.4 8.3 71 6-77 94-169 (597)
71 2xot_A Amphoterin-induced prot 98.9 8.7E-09 3E-13 73.2 7.8 71 7-78 59-135 (361)
72 3t6q_A CD180 antigen; protein- 98.8 5.7E-09 1.9E-13 78.1 7.0 74 6-79 444-524 (606)
73 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.3E-08 4.6E-13 75.8 9.0 49 3-51 369-420 (562)
74 1a9n_A U2A', U2A'; complex (nu 98.8 3.7E-09 1.3E-13 67.9 5.2 77 5-83 58-144 (176)
75 2id5_A Lingo-1, leucine rich r 98.8 6.9E-09 2.4E-13 75.7 7.3 75 4-78 73-151 (477)
76 1xku_A Decorin; proteoglycan, 98.8 7.6E-09 2.6E-13 72.3 7.2 62 6-68 71-134 (330)
77 2xwt_C Thyrotropin receptor; s 98.8 1.9E-10 6.6E-15 77.1 -0.9 60 6-66 50-116 (239)
78 3o6n_A APL1; leucine-rich repe 98.8 1.3E-08 4.4E-13 72.6 8.4 70 6-76 88-162 (390)
79 1ds9_A Outer arm dynein; leuci 98.8 3.7E-11 1.3E-15 78.7 -4.7 68 2-72 39-109 (198)
80 3j0a_A TOLL-like receptor 5; m 98.8 3.4E-09 1.2E-13 82.6 5.5 76 4-79 66-148 (844)
81 3zyi_A Leucine-rich repeat-con 98.8 1.2E-08 4.2E-13 74.2 8.1 61 4-65 92-157 (452)
82 2z62_A TOLL-like receptor 4, v 98.8 1.3E-08 4.5E-13 69.4 7.8 71 6-76 47-121 (276)
83 2z66_A Variable lymphocyte rec 98.8 8.4E-09 2.9E-13 71.3 6.8 66 4-69 143-213 (306)
84 3o6n_A APL1; leucine-rich repe 98.8 8.2E-09 2.8E-13 73.6 6.9 69 5-75 242-314 (390)
85 3oja_B Anopheles plasmodium-re 98.8 1.8E-08 6.1E-13 75.8 8.9 80 4-83 116-199 (597)
86 2ft3_A Biglycan; proteoglycan, 98.8 1.5E-08 5.1E-13 70.9 7.9 68 4-73 71-140 (332)
87 2z80_A TOLL-like receptor 2, v 98.8 1.3E-08 4.3E-13 71.8 7.5 59 6-65 71-134 (353)
88 2z63_A TOLL-like receptor 4, v 98.8 7.9E-09 2.7E-13 76.6 6.7 73 4-76 438-515 (570)
89 2z81_A CD282 antigen, TOLL-lik 98.8 6.9E-09 2.4E-13 76.7 6.3 67 6-72 69-140 (549)
90 3zyj_A Leucine-rich repeat-con 98.8 1.8E-08 6.1E-13 73.1 8.1 40 6-45 83-123 (440)
91 1xeu_A Internalin C; cellular 98.8 3.2E-08 1.1E-12 67.5 8.5 59 6-66 58-117 (263)
92 4glp_A Monocyte differentiatio 98.8 9.4E-09 3.2E-13 71.4 5.9 79 7-86 193-282 (310)
93 3o53_A Protein LRIM1, AGAP0063 98.8 2.2E-08 7.7E-13 69.7 7.7 40 6-45 139-180 (317)
94 2xwt_C Thyrotropin receptor; s 98.8 1.3E-08 4.6E-13 68.1 6.2 69 3-73 120-197 (239)
95 1jl5_A Outer protein YOPM; leu 98.8 4.9E-10 1.7E-14 82.1 -0.9 80 2-83 25-118 (454)
96 3zyj_A Leucine-rich repeat-con 98.8 1.9E-08 6.4E-13 73.0 7.4 38 7-45 181-218 (440)
97 3zyi_A Leucine-rich repeat-con 98.8 3.9E-08 1.3E-12 71.5 9.1 68 5-73 117-189 (452)
98 3g06_A SSPH2 (leucine-rich rep 98.8 4E-08 1.4E-12 74.7 9.3 88 11-106 221-308 (622)
99 3j0a_A TOLL-like receptor 5; m 98.8 1.2E-08 4E-13 79.6 6.5 83 4-86 41-133 (844)
100 1wwl_A Monocyte differentiatio 98.8 7.5E-09 2.6E-13 72.0 4.8 71 9-80 93-174 (312)
101 3oja_A Leucine-rich immune mol 98.8 9.1E-09 3.1E-13 75.9 5.6 40 5-45 52-91 (487)
102 2ft3_A Biglycan; proteoglycan, 98.8 1.7E-09 6E-14 75.7 1.3 63 5-68 211-277 (332)
103 1ziw_A TOLL-like receptor 3; i 98.7 3E-08 1E-12 75.1 7.8 81 5-86 43-131 (680)
104 3cvr_A Invasion plasmid antige 98.7 5.1E-08 1.8E-12 73.5 8.7 91 9-107 158-255 (571)
105 3o53_A Protein LRIM1, AGAP0063 98.7 9.8E-09 3.3E-13 71.6 4.5 40 5-45 52-91 (317)
106 1h6u_A Internalin H; cell adhe 98.7 5.5E-08 1.9E-12 67.7 7.8 59 6-66 58-118 (308)
107 1h6t_A Internalin B; cell adhe 98.7 6.3E-08 2.2E-12 66.9 7.9 37 8-45 65-101 (291)
108 4glp_A Monocyte differentiatio 98.7 2.3E-08 8E-13 69.4 5.7 72 4-76 162-245 (310)
109 4ay9_X Follicle-stimulating ho 98.7 2.2E-08 7.6E-13 70.7 5.7 74 2-77 23-102 (350)
110 1xku_A Decorin; proteoglycan, 98.7 1.1E-07 3.8E-12 66.3 9.2 63 4-67 209-275 (330)
111 2ifg_A High affinity nerve gro 98.7 5.5E-08 1.9E-12 68.3 7.5 65 3-68 47-116 (347)
112 3oja_A Leucine-rich immune mol 98.7 2.4E-08 8.1E-13 73.7 5.8 62 4-66 137-202 (487)
113 3g06_A SSPH2 (leucine-rich rep 98.7 5.9E-08 2E-12 73.8 8.0 56 3-64 55-110 (622)
114 4fmz_A Internalin; leucine ric 98.7 7.3E-08 2.5E-12 67.5 7.8 69 7-77 239-309 (347)
115 1h6u_A Internalin H; cell adhe 98.7 9.9E-08 3.4E-12 66.4 8.0 57 7-65 81-139 (308)
116 3cvr_A Invasion plasmid antige 98.6 9.8E-08 3.3E-12 72.0 8.2 9 56-64 161-169 (571)
117 1h6t_A Internalin B; cell adhe 98.6 1.3E-07 4.5E-12 65.3 8.3 38 7-45 86-123 (291)
118 4fmz_A Internalin; leucine ric 98.6 8.5E-08 2.9E-12 67.1 7.1 77 7-86 217-297 (347)
119 1xeu_A Internalin C; cellular 98.6 8E-08 2.7E-12 65.6 6.8 77 6-85 36-115 (263)
120 3bz5_A Internalin-J, INLJ; leu 98.6 9.9E-08 3.4E-12 69.9 6.5 40 7-48 208-247 (457)
121 1jl5_A Outer protein YOPM; leu 98.6 2.2E-07 7.5E-12 68.0 8.3 69 13-84 217-285 (454)
122 3bz5_A Internalin-J, INLJ; leu 98.6 3.4E-07 1.2E-11 67.1 8.8 37 7-45 60-96 (457)
123 1m9s_A Internalin B; cell inva 98.6 2.2E-07 7.6E-12 70.4 8.0 60 6-67 104-165 (605)
124 1m9s_A Internalin B; cell inva 98.6 2.1E-07 7.2E-12 70.6 7.7 59 6-66 60-120 (605)
125 2ca6_A RAN GTPase-activating p 98.5 5.5E-08 1.9E-12 69.3 3.8 70 6-75 211-298 (386)
126 1ds9_A Outer arm dynein; leuci 98.5 2.5E-09 8.7E-14 69.9 -3.1 64 3-68 63-128 (198)
127 1o6v_A Internalin A; bacterial 98.5 5.9E-07 2E-11 65.5 8.1 38 7-45 261-298 (466)
128 2ast_B S-phase kinase-associat 98.4 2.1E-07 7.1E-12 64.8 4.7 38 7-44 164-205 (336)
129 2ast_B S-phase kinase-associat 98.4 9.6E-08 3.3E-12 66.5 2.7 59 7-65 89-152 (336)
130 1o6v_A Internalin A; bacterial 98.4 1.4E-06 4.6E-11 63.6 8.9 58 7-65 283-341 (466)
131 4ay9_X Follicle-stimulating ho 98.4 3.9E-07 1.3E-11 64.3 5.5 69 3-72 169-240 (350)
132 3rw6_A Nuclear RNA export fact 98.4 8E-07 2.8E-11 61.2 6.2 64 8-72 167-237 (267)
133 2ca6_A RAN GTPase-activating p 98.3 3.3E-07 1.1E-11 65.2 2.3 74 3-76 24-119 (386)
134 3goz_A Leucine-rich repeat-con 98.2 7.9E-07 2.7E-11 62.9 3.8 61 7-67 18-92 (362)
135 1z7x_W Ribonuclease inhibitor; 98.1 1.6E-06 5.3E-11 62.7 2.4 65 11-75 313-394 (461)
136 3goz_A Leucine-rich repeat-con 98.0 3.1E-06 1E-10 59.9 3.5 62 6-67 45-121 (362)
137 1z7x_W Ribonuclease inhibitor; 97.9 2.7E-06 9.3E-11 61.4 1.8 38 8-45 25-67 (461)
138 3rw6_A Nuclear RNA export fact 97.8 1.9E-05 6.6E-10 54.3 4.6 59 3-62 188-258 (267)
139 3e4g_A ATP synthase subunit S, 97.8 2.4E-05 8.2E-10 50.7 3.9 89 3-92 53-155 (176)
140 3sb4_A Hypothetical leucine ri 97.7 1.1E-05 3.8E-10 56.3 1.3 68 10-81 225-299 (329)
141 3rfe_A Platelet glycoprotein I 97.5 0.00016 5.5E-09 44.3 4.9 43 2-46 24-67 (130)
142 3sb4_A Hypothetical leucine ri 97.5 0.00025 8.6E-09 49.4 6.0 72 3-78 241-320 (329)
143 3un9_A NLR family member X1; l 97.4 0.00012 3.9E-09 52.4 3.7 36 10-45 154-194 (372)
144 3un9_A NLR family member X1; l 97.4 5.4E-05 1.8E-09 54.1 1.9 66 4-69 176-253 (372)
145 2p1m_B Transport inhibitor res 97.4 6.5E-05 2.2E-09 55.8 2.2 58 9-66 103-167 (594)
146 2p1m_B Transport inhibitor res 97.4 5.2E-05 1.8E-09 56.3 1.5 80 7-87 428-517 (594)
147 3ogk_B Coronatine-insensitive 97.3 0.00013 4.3E-09 54.3 3.1 36 10-45 462-499 (592)
148 1io0_A Tropomodulin; LRR prote 97.0 0.00037 1.3E-08 44.9 2.8 38 8-45 33-76 (185)
149 3ogk_B Coronatine-insensitive 97.0 0.00097 3.3E-08 49.5 5.4 39 7-45 188-231 (592)
150 3rfe_A Platelet glycoprotein I 96.8 0.0031 1.1E-07 38.5 5.3 51 14-67 11-67 (130)
151 3e4g_A ATP synthase subunit S, 96.5 0.0016 5.5E-08 42.1 2.9 64 6-70 80-154 (176)
152 1io0_A Tropomodulin; LRR prote 96.3 0.0018 6.2E-08 41.6 2.2 64 5-68 59-136 (185)
153 2ra8_A Uncharacterized protein 95.7 0.0052 1.8E-07 43.8 2.4 78 9-86 217-317 (362)
154 4fdw_A Leucine rich hypothetic 95.1 0.072 2.5E-06 38.3 6.7 57 6-64 266-332 (401)
155 4fdw_A Leucine rich hypothetic 94.9 0.058 2E-06 38.8 5.8 56 6-63 175-234 (401)
156 4fs7_A Uncharacterized protein 93.3 0.24 8.2E-06 35.1 6.3 55 7-64 293-352 (394)
157 2ra8_A Uncharacterized protein 93.3 0.077 2.6E-06 37.7 3.7 36 8-45 169-204 (362)
158 4h09_A Hypothetical leucine ri 92.7 0.19 6.5E-06 35.2 5.0 35 8-42 283-318 (379)
159 4gt6_A Cell surface protein; l 91.8 0.35 1.2E-05 34.2 5.6 62 7-73 284-350 (394)
160 4fs7_A Uncharacterized protein 90.5 1 3.5E-05 31.8 6.8 37 7-44 316-353 (394)
161 4gt6_A Cell surface protein; l 89.5 2.1 7E-05 30.2 7.8 88 6-95 260-365 (394)
162 4h09_A Hypothetical leucine ri 88.9 1.2 4.3E-05 31.0 6.3 54 8-63 260-318 (379)
163 1pgv_A TMD-1, tropomodulin TMD 88.6 0.49 1.7E-05 30.9 3.7 16 30-45 66-81 (197)
164 1pgv_A TMD-1, tropomodulin TMD 79.5 1.9 6.7E-05 28.0 3.4 59 7-65 66-136 (197)
165 2lz0_A Uncharacterized protein 44.4 22 0.00076 20.1 2.9 36 7-43 16-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.38 E-value=3.2e-12 Score=89.98 Aligned_cols=86 Identities=26% Similarity=0.298 Sum_probs=63.3
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
.+|.+++++++|++|++++|.++.+|+.++.+++|+.|++++|.+.+.+|.. +++|+.|++++|+..+.+|..++.+
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence 4677788888888888888888878877888888888888888777777765 4567778888777777777766543
Q ss_pred ---CceeecCcc
Q 046349 79 ---YEIDLSCNF 87 (119)
Q Consensus 79 ---~~l~~~~~~ 87 (119)
+.|++.+|.
T Consensus 277 ~~L~~L~L~~n~ 288 (328)
T 4fcg_A 277 TQLEKLDLRGCV 288 (328)
T ss_dssp TTCCEEECTTCT
T ss_pred CCCCEEeCCCCC
Confidence 345555543
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.32 E-value=6.1e-12 Score=88.55 Aligned_cols=83 Identities=27% Similarity=0.190 Sum_probs=74.8
Q ss_pred CcChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFS 77 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~ 77 (119)
.+|..++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|.. +++|+.|++++|+..+.+|..+++
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 47888999999999999999887 89999999999999999999999999976 578999999999999999999998
Q ss_pred cCceeec
Q 046349 78 SYEIDLS 84 (119)
Q Consensus 78 l~~l~~~ 84 (119)
+..+...
T Consensus 300 L~~L~~l 306 (328)
T 4fcg_A 300 LPANCII 306 (328)
T ss_dssp SCTTCEE
T ss_pred ccCceEE
Confidence 7765443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.31 E-value=3.9e-12 Score=98.16 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=38.7
Q ss_pred cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc
Q 046349 3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG 73 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~ 73 (119)
+|.+++++++|+.|++++|.++ .+|+.++.+++|+.||+++|++.|.+|.. +++|++|++++|+..|.+|.
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 4555555555555555555555 55555555555555555555555555543 23455555555555555554
No 4
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=1.6e-11 Score=94.67 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=78.7
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
.+|..++++++|++|+|++|.|+.+|..|+.+++|++|+|++|.+ ..+|.. +.+|++|++++|. ++.+|..++.+
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l 315 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNL 315 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSC
T ss_pred CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCCEEECCCCC-CCccChhhhcC
Confidence 478888899999999999999999999999999999999999984 488876 4679999999864 56889888866
Q ss_pred CceeecCccCCCcccccchHHHHHHHH
Q 046349 79 YEIDLSCNFKLDRNEARGIVEDALQEI 105 (119)
Q Consensus 79 ~~l~~~~~~~l~~~~~~~~~~~~~~~~ 105 (119)
..|.. +.+..|.+.+.....+...
T Consensus 316 ~~L~~---L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 316 CNLQF---LGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp TTCCC---EECTTSCCCSHHHHHHHHH
T ss_pred CCccE---EeCCCCccCCCChHHHhhc
Confidence 65533 4677777777766665543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.29 E-value=4.6e-12 Score=97.80 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=71.6
Q ss_pred cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
+|..++.+++|++||+++|.++ .+|.+++.+++|+.|++++|.+.|.+|.. +.+|+.|++++|+..+.+|..+..+
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 5778999999999999999999 99999999999999999999999999986 5789999999999999999988855
Q ss_pred Cc
Q 046349 79 YE 80 (119)
Q Consensus 79 ~~ 80 (119)
..
T Consensus 704 ~~ 705 (768)
T 3rgz_A 704 TM 705 (768)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=3.8e-11 Score=78.50 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=66.0
Q ss_pred ccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCcee
Q 046349 7 LGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEID 82 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l~ 82 (119)
++.+++|++|++++|.++.+ |..+..+++|++|++++|++.+..|.. +.+|+.|++++|...+..|..+..+..|.
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 78899999999999999955 678999999999999999966555543 57899999999887777787777554443
Q ss_pred ecCccCCCcccccc
Q 046349 83 LSCNFKLDRNEARG 96 (119)
Q Consensus 83 ~~~~~~l~~~~~~~ 96 (119)
. +.+..|...+
T Consensus 130 ~---L~L~~N~l~c 140 (192)
T 1w8a_A 130 S---LNLASNPFNC 140 (192)
T ss_dssp E---EECTTCCBCC
T ss_pred E---EEeCCCCccC
Confidence 2 2445555543
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.22 E-value=1.8e-11 Score=85.55 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=39.1
Q ss_pred cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349 3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
+|..++++++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|.. +++|++|++++|...+.+|..++
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence 4455555555555555555555 55555555555555555555544444443 34455555555554445555444
No 8
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=4.7e-11 Score=89.83 Aligned_cols=91 Identities=21% Similarity=0.132 Sum_probs=71.9
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCcccc-CccccCc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTL-SGLIFSS 78 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~l-p~~~~~l 78 (119)
.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|.+. .+|.. +++|+.|++++|...+.. |..++.+
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l 532 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSC 532 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCcccCCCCCCcEEECCCCCCCCCCCcHHHhcC
Confidence 4676 99999999999999999999999999999999999999954 58843 578999999997766654 8888766
Q ss_pred CceeecCccCCCcccccch
Q 046349 79 YEIDLSCNFKLDRNEARGI 97 (119)
Q Consensus 79 ~~l~~~~~~~l~~~~~~~~ 97 (119)
+.|.. +.+..|...+.
T Consensus 533 ~~L~~---L~L~~N~l~~~ 548 (567)
T 1dce_A 533 PRLVL---LNLQGNSLCQE 548 (567)
T ss_dssp TTCCE---EECTTSGGGGS
T ss_pred CCCCE---EEecCCcCCCC
Confidence 55433 24455555443
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.18 E-value=2.1e-11 Score=85.13 Aligned_cols=79 Identities=28% Similarity=0.369 Sum_probs=69.7
Q ss_pred CcChhccCCCCCCEEeccC-CCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349 2 ELPESLGQLSTLEELFLVK-NNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~-n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
.+|..++++++|++|++++ |.+. .+|..++.+++|++|++++|.+.+.+|.. +.+|++|++++|...+.+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 4789999999999999995 8888 89999999999999999999987788875 57899999999888888998887
Q ss_pred CcCc
Q 046349 77 SSYE 80 (119)
Q Consensus 77 ~l~~ 80 (119)
.+..
T Consensus 147 ~l~~ 150 (313)
T 1ogq_A 147 SLPN 150 (313)
T ss_dssp GCTT
T ss_pred cCCC
Confidence 5544
No 10
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=1.8e-11 Score=76.68 Aligned_cols=92 Identities=21% Similarity=0.150 Sum_probs=66.6
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccc-cCccccC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDT-LSGLIFS 77 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~-lp~~~~~ 77 (119)
.+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.+.+|.. +++|+.|++++|...+. .|..++.
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~ 111 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh
Confidence 4777788999999999999999877 77899999999999999966657764 67899999998765441 2355654
Q ss_pred cCceeecCccCCCcccccch
Q 046349 78 SYEIDLSCNFKLDRNEARGI 97 (119)
Q Consensus 78 l~~l~~~~~~~l~~~~~~~~ 97 (119)
++.|.. +.+..+...++
T Consensus 112 l~~L~~---L~l~~N~l~~~ 128 (149)
T 2je0_A 112 LENLKS---LDLFNCEVTNL 128 (149)
T ss_dssp CTTCCE---EECTTCGGGGS
T ss_pred CCCCCE---EeCcCCcccch
Confidence 443322 23444444444
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.17 E-value=5.9e-11 Score=90.04 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=31.8
Q ss_pred CChhhhcCCCCCEEeccCcccccc-----------------cCCCC-----CCCceeeccCCCCccccCccccCcCc
Q 046349 26 IPESIMQLSKLKFLNLSYSERLQS-----------------LLKLP-----CSLLELDAHHCTVLDTLSGLIFSSYE 80 (119)
Q Consensus 26 lP~~~~~l~~L~~L~l~~n~~~~~-----------------lp~~~-----~~L~~L~l~~~~~~~~lp~~~~~l~~ 80 (119)
+|++++++++|++|++++|.+.+. +|..+ .+|++|++++|...+.+|..+++++.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 556666666666666666665443 55542 34566666666666666665554433
No 12
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.8e-10 Score=75.53 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=59.4
Q ss_pred CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc-ccc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG-LIF 76 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~-~~~ 76 (119)
.+|..+.++++|++|++++|.++.+++ .|..+++|+.|++++|++.+..|.. +.+|+.|++++|.. ..+|. .+.
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~ 123 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFN 123 (193)
T ss_dssp SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTT
T ss_pred hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhh
Confidence 467778888888888888888886654 6888888888888888854444433 46788888888654 45554 354
Q ss_pred CcCceeecCccCCCccccc
Q 046349 77 SSYEIDLSCNFKLDRNEAR 95 (119)
Q Consensus 77 ~l~~l~~~~~~~l~~~~~~ 95 (119)
.+..|.. +.+..|...
T Consensus 124 ~l~~L~~---L~L~~N~~~ 139 (193)
T 2wfh_A 124 DLSALSH---LAIGANPLY 139 (193)
T ss_dssp TCTTCCE---EECCSSCEE
T ss_pred cCccccE---EEeCCCCee
Confidence 4433322 244455443
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.17 E-value=1.7e-10 Score=76.98 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=48.9
Q ss_pred hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCce
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEI 81 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l 81 (119)
.|+++++|++|++++|.++.+|+ .+..+++|++|++++|++.+..|.. +.+|+.|++++|...+..|..+..+..|
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 45666666666666666664443 3666666666666666644444443 3556677777655555445555544333
Q ss_pred eecCccCCCccccc
Q 046349 82 DLSCNFKLDRNEAR 95 (119)
Q Consensus 82 ~~~~~~~l~~~~~~ 95 (119)
.. +.+..|...
T Consensus 156 ~~---L~L~~N~l~ 166 (220)
T 2v70_A 156 ST---LNLLANPFN 166 (220)
T ss_dssp CE---EECCSCCEE
T ss_pred CE---EEecCcCCc
Confidence 22 244445444
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=2.2e-10 Score=75.07 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=61.0
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
++|..+. ++|++|++++|.++.+|..+..+++|+.|++++|.+.+..|.. +.+|+.|++++|...+..|..+..+
T Consensus 24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence 4676553 6899999999999999999999999999999999955444443 5789999999976655555566654
Q ss_pred Cce
Q 046349 79 YEI 81 (119)
Q Consensus 79 ~~l 81 (119)
..|
T Consensus 102 ~~L 104 (193)
T 2wfh_A 102 KSL 104 (193)
T ss_dssp TTC
T ss_pred CCC
Confidence 443
No 15
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=2.1e-10 Score=73.73 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=63.1
Q ss_pred CcChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCc-cc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG-LI 75 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~-~~ 75 (119)
++|..+. ++|++|++++|.++.+ |..+..+++|++|++++|++. .+|.. +.+|+.|++++|... .+|. .+
T Consensus 23 ~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~ 98 (170)
T 3g39_A 23 SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAF 98 (170)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCCccC-EeCHHHh
Confidence 4676663 8899999999999966 567999999999999999954 55542 578999999997554 4554 46
Q ss_pred cCcCceeecCccCCCccccc
Q 046349 76 FSSYEIDLSCNFKLDRNEAR 95 (119)
Q Consensus 76 ~~l~~l~~~~~~~l~~~~~~ 95 (119)
..+..|.. +.+..|...
T Consensus 99 ~~l~~L~~---L~L~~N~~~ 115 (170)
T 3g39_A 99 DNLKSLTH---IWLLNNPWD 115 (170)
T ss_dssp TTCTTCCE---EECCSSCBC
T ss_pred cCCCCCCE---EEeCCCCCC
Confidence 65544432 244555544
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.14 E-value=4.7e-11 Score=90.57 Aligned_cols=75 Identities=13% Similarity=0.192 Sum_probs=62.6
Q ss_pred cChhccCCCCCCEEeccCCCCcc------------------CChhhh--cCCCCCEEeccCcccccccCCC---CCCCce
Q 046349 3 LPESLGQLSTLEELFLVKNNFVR------------------IPESIM--QLSKLKFLNLSYSERLQSLLKL---PCSLLE 59 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~------------------lP~~~~--~l~~L~~L~l~~n~~~~~lp~~---~~~L~~ 59 (119)
+|.+++++++|++|++++|.++. +|+.++ ++++|++|++++|.+.+.+|.. +++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 78888999999999999999886 898888 9999999999999888888875 467888
Q ss_pred eeccCCC-Ccc-ccCccccC
Q 046349 60 LDAHHCT-VLD-TLSGLIFS 77 (119)
Q Consensus 60 L~l~~~~-~~~-~lp~~~~~ 77 (119)
|++++|. ..+ .+|..++.
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~ 297 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQA 297 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHH
T ss_pred EECcCCCCCccccchHHHHh
Confidence 9999887 666 78876643
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.13 E-value=1.9e-11 Score=81.57 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=58.5
Q ss_pred hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYE 80 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~ 80 (119)
.++.+++|++|++++|.++.+++ .+..+++|++|++++|.+.+..|.. +.+|++|++++|...+..|..+..+..
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 37889999999999999996665 7899999999999999865444443 578999999997776666777765444
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.13 E-value=2.2e-10 Score=76.42 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=19.7
Q ss_pred ccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcc
Q 046349 7 LGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~ 45 (119)
+..+++|++|++++|.++.+ |..|.++++|++|++++|+
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 44455555555555555522 4445555555555555554
No 19
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=2.9e-10 Score=73.39 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=58.9
Q ss_pred CcChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCcc-c
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGL-I 75 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~-~ 75 (119)
++|..+. ++|++|++++|.++.+ |..+..+++|++|++++|+ +..+|.. +.+|+.|++++|.. ..+|.. +
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~ 101 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAF 101 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCcc-ceeCHHHh
Confidence 5777664 8899999999999966 5689999999999999999 4556653 57899999998654 456654 6
Q ss_pred cCcCce
Q 046349 76 FSSYEI 81 (119)
Q Consensus 76 ~~l~~l 81 (119)
..+..|
T Consensus 102 ~~l~~L 107 (174)
T 2r9u_A 102 DNLKSL 107 (174)
T ss_dssp TTCTTC
T ss_pred ccccCC
Confidence 544443
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.13 E-value=2.8e-10 Score=75.89 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=67.0
Q ss_pred ChhccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcC
Q 046349 4 PESLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSY 79 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~ 79 (119)
|..|.++++|++|++++|.++.+|+. +..+++|+.|++++|++.+..|.. +++|+.|++++|...+..+..+..+.
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 67899999999999999999988875 689999999999999966555554 47899999999765554444566444
Q ss_pred ceeecCccCCCccccc
Q 046349 80 EIDLSCNFKLDRNEAR 95 (119)
Q Consensus 80 ~l~~~~~~~l~~~~~~ 95 (119)
.|.. +.+..|...
T Consensus 153 ~L~~---L~L~~N~~~ 165 (220)
T 2v9t_B 153 AIQT---MHLAQNPFI 165 (220)
T ss_dssp TCCE---EECCSSCEE
T ss_pred CCCE---EEeCCCCcC
Confidence 4322 244455544
No 21
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=3.2e-10 Score=74.11 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=61.3
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChh--hhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPES--IMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~--~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
++|..+.. ++++|++++|.+..+|+. ++.+++|++|++++|.+.+..|.. +.+|+.|++++|...+..|..+.
T Consensus 22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 99 (192)
T 1w8a_A 22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL 99 (192)
T ss_dssp SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc
Confidence 56766544 899999999999987763 999999999999999977666765 47899999999876666665565
Q ss_pred CcCc
Q 046349 77 SSYE 80 (119)
Q Consensus 77 ~l~~ 80 (119)
.+..
T Consensus 100 ~l~~ 103 (192)
T 1w8a_A 100 GLHQ 103 (192)
T ss_dssp TCTT
T ss_pred CCCC
Confidence 4444
No 22
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=3.1e-10 Score=79.87 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=60.5
Q ss_pred CcChhccCCCCCCEEeccC-CCCccCC-hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349 2 ELPESLGQLSTLEELFLVK-NNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~-n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
.+|. ++.+++|+.|+|++ |.++.+| ..|+.+++|+.|+|++|++.+..|.. +++|+.|++++|. +..+|..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHc
Confidence 5888 99999999999996 9999777 57999999999999999966666654 6789999999965 456666543
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.08 E-value=5.1e-10 Score=74.96 Aligned_cols=71 Identities=27% Similarity=0.283 Sum_probs=39.6
Q ss_pred ChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCCccccCcccc
Q 046349 4 PESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
|..++++++|++|++++|.+..+|. .+..+++|+.|++++|++. .+|. . +.+|+.|++++|. +..+|..+.
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 132 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNK-LTELPRGIE 132 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCSCCTTGG
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCc-ccccCcccc
Confidence 4445666666666666666665554 3466666666666666633 3332 1 3456666666543 335554443
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.08 E-value=1.9e-10 Score=86.04 Aligned_cols=78 Identities=18% Similarity=0.137 Sum_probs=44.4
Q ss_pred ChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCcc-ccCccccCc
Q 046349 4 PESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLD-TLSGLIFSS 78 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~-~lp~~~~~l 78 (119)
|..|+++++|++|++++|.++.+ |.+|+++++|++|++++|.+.+..|.. +.+|++|++++|...+ .+|..++++
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l 152 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC
T ss_pred HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhc
Confidence 34456666666666666666643 555666666666666666633222222 3556777777665543 567666654
Q ss_pred Cce
Q 046349 79 YEI 81 (119)
Q Consensus 79 ~~l 81 (119)
+.|
T Consensus 153 ~~L 155 (606)
T 3vq2_A 153 TNL 155 (606)
T ss_dssp TTC
T ss_pred CCC
Confidence 443
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.08 E-value=2.8e-10 Score=84.87 Aligned_cols=61 Identities=28% Similarity=0.208 Sum_probs=37.9
Q ss_pred hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTV 67 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~ 67 (119)
+|+++++|++|++++|.|+.+|+ +|.++++|++|++++|+ +..+|.. +.+|++|++++|+.
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSCC
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCcC
Confidence 46667777777777777765544 56667777777777776 3344432 35566666666543
No 26
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=1e-10 Score=90.11 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=66.4
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
.+|.+|+++++|++|+|++|.|+.+|..++.+++|++|++++|. ++.+|.. +.+|+.|++++|.+.+.+|..+.
T Consensus 261 ~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 261 ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 58999999999999999999999999999999999999999998 6788886 46899999999888877776664
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=1.3e-10 Score=91.19 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=57.9
Q ss_pred cChhccCCCCCCEEeccCCCCcc------------------CChhhh--cCCCCCEEeccCcccccccCCC---CCCCce
Q 046349 3 LPESLGQLSTLEELFLVKNNFVR------------------IPESIM--QLSKLKFLNLSYSERLQSLLKL---PCSLLE 59 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~------------------lP~~~~--~l~~L~~L~l~~n~~~~~lp~~---~~~L~~ 59 (119)
+|.+++++++|++|++++|.++. +|+.++ ++++|++|++++|.+.+.+|.. +++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78888888888888888888886 888776 8888888888888878888865 467888
Q ss_pred eeccCCC-Ccc-ccCcccc
Q 046349 60 LDAHHCT-VLD-TLSGLIF 76 (119)
Q Consensus 60 L~l~~~~-~~~-~lp~~~~ 76 (119)
|++++|. ..+ .+|..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~ 538 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWT 538 (876)
T ss_dssp EECTTCTTSCHHHHHHHHH
T ss_pred EECcCCCCcccccchHHHH
Confidence 8888876 555 6776555
No 28
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=3.4e-09 Score=68.00 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=61.7
Q ss_pred cCh-hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcc-cc
Q 046349 3 LPE-SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGL-IF 76 (119)
Q Consensus 3 lP~-~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~-~~ 76 (119)
+|. .++.+++|++|++++|.++.+|+ .+..+++|+.|++++|.+.+..+.. +.+|+.|++++|.. ..+|.. +.
T Consensus 43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~ 121 (177)
T 2o6r_A 43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFD 121 (177)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTT
T ss_pred eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhc
Confidence 344 46788999999999999987775 4688999999999999855443332 46789999998654 456654 34
Q ss_pred CcCceeecCccCCCcccccchH
Q 046349 77 SSYEIDLSCNFKLDRNEARGIV 98 (119)
Q Consensus 77 ~l~~l~~~~~~~l~~~~~~~~~ 98 (119)
.+..|.. +.+..|...+..
T Consensus 122 ~l~~L~~---L~l~~N~~~~~~ 140 (177)
T 2o6r_A 122 RLTSLQK---IWLHTNPWDCSC 140 (177)
T ss_dssp TCTTCCE---EECCSSCBCCCH
T ss_pred CCcccCE---EEecCCCeeccC
Confidence 3433322 245555555543
No 29
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.04 E-value=6.3e-11 Score=75.55 Aligned_cols=65 Identities=23% Similarity=0.257 Sum_probs=44.3
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTV 67 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~ 67 (119)
.+|..++.+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|.. +++|+.|++++|..
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 107 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc
Confidence 3566667777777777777777755 56777777777777777755545553 46677777777543
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.03 E-value=7.3e-10 Score=82.62 Aligned_cols=76 Identities=22% Similarity=0.196 Sum_probs=62.2
Q ss_pred cChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 3 LPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
+|..++.+++|++|++++|.++.+ |..|+++++|+.|++++|++.+..|.. +++|+.|++++|...+..|..+..+
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 467789999999999999999954 668999999999999999955444443 5789999999988777777777644
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.02 E-value=4.1e-10 Score=77.24 Aligned_cols=70 Identities=23% Similarity=0.220 Sum_probs=32.1
Q ss_pred hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCcccc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
.++++++|++|++++|.++.+|. .++.+++|+.|++++|++ ..+|.. +.+|+.|++++|...+..|..+.
T Consensus 124 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 34445555555555555554433 244555555555555542 223221 23455555555444333344443
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.01 E-value=1.6e-09 Score=72.56 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=61.0
Q ss_pred CcChh-ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc-cc
Q 046349 2 ELPES-LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG-LI 75 (119)
Q Consensus 2 ~lP~~-~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~-~~ 75 (119)
.+|.. ++++++|++|++++|.++.+|+ .+..+++|+.|++++|+ +..+|.. +.+|+.|++++|... .+|. .+
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~ 155 (229)
T 3e6j_A 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLK-SIPHGAF 155 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTT
T ss_pred CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCC-ccCHHHH
Confidence 35544 6899999999999999998776 47899999999999999 5588875 578999999997554 5553 45
Q ss_pred cCcCce
Q 046349 76 FSSYEI 81 (119)
Q Consensus 76 ~~l~~l 81 (119)
..+..|
T Consensus 156 ~~l~~L 161 (229)
T 3e6j_A 156 DRLSSL 161 (229)
T ss_dssp TTCTTC
T ss_pred hCCCCC
Confidence 544443
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.00 E-value=2.4e-10 Score=77.35 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=20.7
Q ss_pred hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~ 45 (119)
.++++++|++|++++|.++.+++ .+..+++|++|++++|+
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 34555555555555555553332 34555555555555555
No 34
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.00 E-value=9.2e-10 Score=71.98 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=35.4
Q ss_pred hccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccC
Q 046349 6 SLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLS 72 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp 72 (119)
.++.+++|++|++++|.++ ..|..++.+++|++|++++|.+.+..|.. +++|+.|++++|..++.+|
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 4555555555555555555 34555555555556666555544333332 3455566666554344444
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.00 E-value=1.6e-10 Score=83.70 Aligned_cols=61 Identities=26% Similarity=0.187 Sum_probs=28.1
Q ss_pred hccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCC
Q 046349 6 SLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCT 66 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~ 66 (119)
.++++++|++|++++|.+..+ |..++.+++|+.|++++|++.+..|.. +++|++|++++|.
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 344444555555555544422 334444555555555555433333332 2445555555543
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=2.1e-09 Score=84.42 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=64.1
Q ss_pred CcChhcc--CCCCCCEEeccCCCCccCChhhhcCCCCCEEeccC------cccccccCCC---CCCCceeeccCCCCccc
Q 046349 2 ELPESLG--QLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSY------SERLQSLLKL---PCSLLELDAHHCTVLDT 70 (119)
Q Consensus 2 ~lP~~~~--~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~------n~~~~~lp~~---~~~L~~L~l~~~~~~~~ 70 (119)
.+|..+. .+++|+.|++++|.++.+|..+..+++|+.|++++ |.+.+.+|.. +++|+.|++++|.. +.
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~ 820 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK 820 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Cc
Confidence 4677776 88888888888888888888888888888888866 6667777765 46788888888765 78
Q ss_pred cCcccc-CcCceeecCc
Q 046349 71 LSGLIF-SSYEIDLSCN 86 (119)
Q Consensus 71 lp~~~~-~l~~l~~~~~ 86 (119)
+|..+. +++.|++.+|
T Consensus 821 Ip~~l~~~L~~LdLs~N 837 (876)
T 4ecn_A 821 VDEKLTPQLYILDIADN 837 (876)
T ss_dssp CCSCCCSSSCEEECCSC
T ss_pred cCHhhcCCCCEEECCCC
Confidence 887654 4555666555
No 37
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=1.4e-09 Score=81.87 Aligned_cols=71 Identities=24% Similarity=0.282 Sum_probs=60.6
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCccccccc-CCC---CCCCceeeccCCCCccccCcc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSL-LKL---PCSLLELDAHHCTVLDTLSGL 74 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~l-p~~---~~~L~~L~l~~~~~~~~lp~~ 74 (119)
++|..++++++|+.|++++|.++.+| .++.+++|+.|++++|++.+.. |.. +++|+.|++++|...+ +|+.
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~ 551 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGI 551 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-SSSC
T ss_pred ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-CccH
Confidence 58999999999999999999999998 8999999999999999966554 765 5789999999976544 4443
No 38
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.98 E-value=3.3e-10 Score=76.63 Aligned_cols=60 Identities=25% Similarity=0.351 Sum_probs=27.9
Q ss_pred ccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTV 67 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~ 67 (119)
++.+++|++|++++|.++.+|+. +..+++|+.|++++|++. .+|. . +.+|+.|++++|..
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcC
Confidence 34445555555555555544432 344555555555555422 2222 1 24455555555433
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.98 E-value=2.4e-09 Score=74.14 Aligned_cols=63 Identities=24% Similarity=0.172 Sum_probs=36.3
Q ss_pred cChhccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCC
Q 046349 3 LPESLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCT 66 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~ 66 (119)
+|..+.++++|++|++++|.++.+| ..+..+++|+.|++++|++. .+|.. +++|+.|++++|.
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCc
Confidence 4555566666666666666666554 34666666666666666633 33331 3456666666543
No 40
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.96 E-value=2.5e-09 Score=69.92 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=59.0
Q ss_pred cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccC
Q 046349 3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLS 72 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp 72 (119)
.|..++.+++|++|++++|.++ ..|..++.+++|++|++++|...+.+|.. +++|+.|++++|... .++
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~-~~~ 175 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH-DYR 175 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC-CCT
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc-ChH
Confidence 4778899999999999999999 57889999999999999999867777753 678999999997644 454
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.96 E-value=4.3e-10 Score=76.93 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=15.4
Q ss_pred cCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcc
Q 046349 8 GQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~ 45 (119)
+++++|++|++++|.++.+|+ .++.+++|+.|++++|+
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 334444444444444443332 23344444444444444
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.95 E-value=4.2e-09 Score=69.16 Aligned_cols=39 Identities=31% Similarity=0.600 Sum_probs=19.2
Q ss_pred ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~ 45 (119)
++++++|++|++++|.++.+|. .+..+++|++|++++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3445555555555555554443 23445555555555554
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.95 E-value=1.2e-09 Score=80.48 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=58.8
Q ss_pred hhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCcc-ccCccccCcCc
Q 046349 5 ESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLD-TLSGLIFSSYE 80 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~-~lp~~~~~l~~ 80 (119)
..++++++|++|++++|.++.+ |..++++++|++|++++|+ +..+|.. +.+|++|++++|...+ .+|..++.++.
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCccccCCccEEeccCCccccccchhhhccCCc
Confidence 5688899999999999998854 6788999999999999998 4467764 6788999999877665 56777764443
No 44
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.95 E-value=4.4e-09 Score=69.05 Aligned_cols=83 Identities=22% Similarity=0.210 Sum_probs=56.5
Q ss_pred cChh-ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc-ccc
Q 046349 3 LPES-LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG-LIF 76 (119)
Q Consensus 3 lP~~-~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~-~~~ 76 (119)
+|.. +..+++|++|++++|.++.+|+ .+..+++|++|++++|++.+..+.. +++|+.|++++|... .+|. .+.
T Consensus 67 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 145 (208)
T 2o6s_A 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTT
T ss_pred cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhc
Confidence 4443 5788899999999999887775 4688899999999999854433332 467889999886554 4444 344
Q ss_pred Cc---CceeecCc
Q 046349 77 SS---YEIDLSCN 86 (119)
Q Consensus 77 ~l---~~l~~~~~ 86 (119)
.+ +.+++.++
T Consensus 146 ~l~~L~~L~l~~N 158 (208)
T 2o6s_A 146 RLTSLQYIWLHDN 158 (208)
T ss_dssp TCTTCCEEECCSC
T ss_pred cCCCccEEEecCC
Confidence 33 34444433
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.94 E-value=1.8e-09 Score=73.67 Aligned_cols=72 Identities=21% Similarity=0.120 Sum_probs=31.7
Q ss_pred ccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCcc-ccCccccCc
Q 046349 7 LGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLD-TLSGLIFSS 78 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~-~lp~~~~~l 78 (119)
++++++|++|++++|.++.++ ..+.++++|++|++++|.+.+..+.. +.+|+.|++++|...+ .+|..+..+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence 444444444444444444222 33444444444444444422211111 3456666666654433 245555533
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.93 E-value=2.6e-09 Score=78.67 Aligned_cols=49 Identities=29% Similarity=0.323 Sum_probs=25.2
Q ss_pred cChhccCCCCCCEEeccCCCCcc---CChhhhcCCCCCEEeccCcccccccC
Q 046349 3 LPESLGQLSTLEELFLVKNNFVR---IPESIMQLSKLKFLNLSYSERLQSLL 51 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~---lP~~~~~l~~L~~L~l~~n~~~~~lp 51 (119)
+|..++++++|++|++++|.++. +|..++.+++|++|++++|.+.+.+|
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 34455555555555555555552 33345555555555555555433344
No 47
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=3.5e-09 Score=68.25 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=54.4
Q ss_pred ChhccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCc
Q 046349 4 PESLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVL 68 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~ 68 (119)
|..|+++++|++|++++|.++.+|+. +..+++|+.|++++|++ ..+|.. +.+|+.|++++|...
T Consensus 50 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEEEeCCCCcc
Confidence 56789999999999999999988875 68999999999999994 456553 578999999997543
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.92 E-value=1.2e-09 Score=77.08 Aligned_cols=74 Identities=26% Similarity=0.263 Sum_probs=53.0
Q ss_pred ChhccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCC--C---CCCCceeeccCCCCccccC-cccc
Q 046349 4 PESLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLK--L---PCSLLELDAHHCTVLDTLS-GLIF 76 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~--~---~~~L~~L~l~~~~~~~~lp-~~~~ 76 (119)
|..++++++|++|++++|.++.+|.. ++++++|++|++++|+ +..+|. . +++|+.|++++|+..+.++ ..+.
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 45578888888888888888877765 7888888888888887 445665 2 4678888888775555553 3444
Q ss_pred Cc
Q 046349 77 SS 78 (119)
Q Consensus 77 ~l 78 (119)
.+
T Consensus 172 ~l 173 (353)
T 2z80_A 172 GL 173 (353)
T ss_dssp TC
T ss_pred CC
Confidence 33
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.92 E-value=1.8e-09 Score=79.96 Aligned_cols=74 Identities=24% Similarity=0.237 Sum_probs=39.3
Q ss_pred hccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCcc-ccCccccCcC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLD-TLSGLIFSSY 79 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~-~lp~~~~~l~ 79 (119)
.|+++++|++|++++|.++.+| ..|+++++|++|++++|. +..+|.. +.+|++|++++|...+ .+|..+++++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 149 (570)
T 2z63_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (570)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred cccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccC
Confidence 3455555555555555555333 345555555555555555 3333321 3566777777655444 4566665443
Q ss_pred c
Q 046349 80 E 80 (119)
Q Consensus 80 ~ 80 (119)
.
T Consensus 150 ~ 150 (570)
T 2z63_A 150 N 150 (570)
T ss_dssp T
T ss_pred C
Confidence 3
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.91 E-value=1e-09 Score=80.17 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=43.1
Q ss_pred ChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCcccc
Q 046349 4 PESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
|..|.++++|++|++++|.++.+ |..+.++++|++|++++|+ +..+|.. +++|+.|++++|...+..|..+.
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHcc
Confidence 34566677777777777776633 5567777777777777776 3344432 35566666666554444444443
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.91 E-value=3.3e-09 Score=79.03 Aligned_cols=74 Identities=20% Similarity=0.134 Sum_probs=55.9
Q ss_pred hhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCcc-ccCccccCcC
Q 046349 5 ESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLD-TLSGLIFSSY 79 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~-~lp~~~~~l~ 79 (119)
..++++++|++|++++|.++.+ |..+.++++|++|++++|+ +..+|.. +.+|++|++++|...+ .+|..++.+.
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEECCCCCccccCchHhhcccC
Confidence 5788888899999998888855 6678888899999999888 4567764 6778889998876544 3456665443
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.91 E-value=2.2e-09 Score=74.72 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=45.4
Q ss_pred cChhc--cCCCCCCEEeccCCCCccCChhhhcC-----CCCCEEeccCcccccccCCC---CCCCceeeccCCCCccc
Q 046349 3 LPESL--GQLSTLEELFLVKNNFVRIPESIMQL-----SKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDT 70 (119)
Q Consensus 3 lP~~~--~~l~~L~~L~ls~n~l~~lP~~~~~l-----~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~ 70 (119)
+|..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|++.+..|.. +++|+.|++++|...+.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 45554 67777777777777777667666666 77777777777744444343 45677777777665544
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.91 E-value=5.3e-09 Score=75.68 Aligned_cols=77 Identities=21% Similarity=0.130 Sum_probs=62.6
Q ss_pred cChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 3 LPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
+|..++.+++|++|++++|.+..+ |..++.+++|+.|++++|.+.+..|.. +++|+.|++++|...+..|..+..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 467789999999999999999954 668999999999999999965554554 5789999999987766667666644
Q ss_pred C
Q 046349 79 Y 79 (119)
Q Consensus 79 ~ 79 (119)
.
T Consensus 371 ~ 371 (455)
T 3v47_A 371 P 371 (455)
T ss_dssp T
T ss_pred c
Confidence 3
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.91 E-value=3.3e-09 Score=80.37 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=32.0
Q ss_pred hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLI 75 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~ 75 (119)
.++++++|++|++++|.++.+|+ .|+++++|++|++++|++.+..|.. +.+|++|++++|...+..|..+
T Consensus 68 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 141 (680)
T 1ziw_A 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141 (680)
T ss_dssp HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS
T ss_pred HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh
Confidence 34445555555555555554443 3455555555555555432222222 2445555555544444444433
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.91 E-value=4.2e-09 Score=72.89 Aligned_cols=65 Identities=26% Similarity=0.232 Sum_probs=43.6
Q ss_pred cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc
Q 046349 8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG 73 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~ 73 (119)
+.+++|++|++++|.++.+|..+..+++|++|++++|++.+..|.. +.+|+.|++++|... .+|.
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~ 141 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP 141 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCT
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccCh
Confidence 4566677777777777777777777888888888888744333332 457888888876544 4443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.90 E-value=5.1e-09 Score=72.36 Aligned_cols=76 Identities=22% Similarity=0.196 Sum_probs=54.8
Q ss_pred cChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 3 LPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
+|..++.+++|++|++++|.++.+ |..+..+++|+.|++++|++.+..+.. +++|+.|++++|...+..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 566778888888888888888854 567888888888888888744333322 4678888888887777677666543
No 57
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.90 E-value=4.6e-09 Score=78.55 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=43.4
Q ss_pred ChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCcc
Q 046349 4 PESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLD 69 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~ 69 (119)
|..|+++++|++|++++|.+. ..|.+|+++++|++|++++|++.+..|.. +.+|++|++++|...+
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence 456777777777777777777 34566777777777777777755554543 3556667766654433
No 58
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=2.3e-09 Score=68.85 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=32.8
Q ss_pred CCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCc
Q 046349 12 TLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG 73 (119)
Q Consensus 12 ~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~ 73 (119)
+|++|++++|.++.+ +.+..+++|++|++++|.+ ..+|.. +++|+.|++++|. ++.+|.
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~ 105 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELILTNNS-LVELGD 105 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEECCSCC-CCCGGG
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCCEEECCCCc-CCcchh
Confidence 566666666666654 3556666666666666663 334432 3556666666543 344554
No 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.90 E-value=1.7e-09 Score=67.56 Aligned_cols=75 Identities=24% Similarity=0.240 Sum_probs=58.3
Q ss_pred hhccCCCCCCEEeccCCCCcc-CChhhhcCCCCCEEeccCcccccccC--CC---CCCCceeeccCCCCccccCc----c
Q 046349 5 ESLGQLSTLEELFLVKNNFVR-IPESIMQLSKLKFLNLSYSERLQSLL--KL---PCSLLELDAHHCTVLDTLSG----L 74 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~-lP~~~~~l~~L~~L~l~~n~~~~~lp--~~---~~~L~~L~l~~~~~~~~lp~----~ 74 (119)
..++.+++|++|++++|.++. +|..++.+++|++|++++|++. .+| .. +++|+.|++++|... .+|. .
T Consensus 58 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~ 135 (149)
T 2je0_A 58 ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENV 135 (149)
T ss_dssp TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC-SHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHH
T ss_pred hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC-ChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHH
Confidence 467889999999999999996 8888889999999999999954 443 33 578999999997554 4443 4
Q ss_pred ccCcCce
Q 046349 75 IFSSYEI 81 (119)
Q Consensus 75 ~~~l~~l 81 (119)
+..++.|
T Consensus 136 ~~~l~~L 142 (149)
T 2je0_A 136 FKLLPQL 142 (149)
T ss_dssp HHHCTTC
T ss_pred HHHCCCc
Confidence 5444443
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.90 E-value=2.4e-09 Score=80.15 Aligned_cols=72 Identities=22% Similarity=0.165 Sum_probs=37.4
Q ss_pred ChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349 4 PESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
|..++.+++|++|++++|.++ ..|..++.+++|+.|++++|++.+..|.. +++|+.|++++|. +..+|..+.
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~ 541 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQ 541 (606)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGG
T ss_pred HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHh
Confidence 444555555555555555555 33344555555555555555544444443 2445556665543 334555443
No 61
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.89 E-value=8.5e-09 Score=70.47 Aligned_cols=81 Identities=23% Similarity=0.314 Sum_probs=58.6
Q ss_pred hhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc---C
Q 046349 5 ESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF---S 77 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~---~ 77 (119)
..++++++|++|++++|.++.+|+ .++.+++|++|++++|.+.+..|.. +++|+.|++++|...+..|..+. +
T Consensus 103 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 347899999999999999997765 5799999999999999855444432 46789999998765543333333 3
Q ss_pred cCceeecC
Q 046349 78 SYEIDLSC 85 (119)
Q Consensus 78 l~~l~~~~ 85 (119)
++.|++.+
T Consensus 183 L~~L~L~~ 190 (272)
T 3rfs_A 183 LKDLRLYQ 190 (272)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 34444443
No 62
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=5.9e-09 Score=66.88 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=54.5
Q ss_pred ChhccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCCcc
Q 046349 4 PESLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTVLD 69 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~~~ 69 (119)
|..|+++++|++|++++|.++.+|+. +..+++|++|++++|++. .+|. . +.+|+.|++++|....
T Consensus 47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 56789999999999999999988874 689999999999999954 5554 3 5789999999976543
No 63
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.89 E-value=4.1e-09 Score=74.83 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=31.7
Q ss_pred ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG 73 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~ 73 (119)
|.++++|++|++++|.++.+|+ .+..+++|+.|++++|++.+..|.. +.+|+.|++++|. +..+|.
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~ 153 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPV 153 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCG
T ss_pred ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCH
Confidence 4555555555555555554333 3455555555555555533222322 3455556665532 333443
No 64
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=4.9e-09 Score=66.68 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=58.7
Q ss_pred hhccCCCCCCEEeccCCCCcc-CChhhhcCCCCCEEeccCcccccccC--CC---CCCCceeeccCCCCccccCc----c
Q 046349 5 ESLGQLSTLEELFLVKNNFVR-IPESIMQLSKLKFLNLSYSERLQSLL--KL---PCSLLELDAHHCTVLDTLSG----L 74 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~-lP~~~~~l~~L~~L~l~~n~~~~~lp--~~---~~~L~~L~l~~~~~~~~lp~----~ 74 (119)
..++.+++|++|++++|.+.. +|..+..+++|++|++++|. +..+| .. +++|+.|++++|... .+|. .
T Consensus 65 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~ 142 (168)
T 2ell_A 65 SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESV 142 (168)
T ss_dssp SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHH
T ss_pred hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHH
Confidence 467889999999999999995 88888889999999999998 45554 22 578999999997554 4554 5
Q ss_pred ccCcCce
Q 046349 75 IFSSYEI 81 (119)
Q Consensus 75 ~~~l~~l 81 (119)
+..++.|
T Consensus 143 ~~~l~~L 149 (168)
T 2ell_A 143 FKLLPQL 149 (168)
T ss_dssp HTTCSSC
T ss_pred HHhCccC
Confidence 5544443
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.87 E-value=9.8e-09 Score=70.35 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=6.1
Q ss_pred hhcCCCCCEEeccCcc
Q 046349 30 IMQLSKLKFLNLSYSE 45 (119)
Q Consensus 30 ~~~l~~L~~L~l~~n~ 45 (119)
+..+++|++|++++|.
T Consensus 101 ~~~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCG 116 (285)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred hcCCcCCCEEECCCCc
Confidence 3333333333333333
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.87 E-value=1e-08 Score=69.93 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=34.6
Q ss_pred hccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTV 67 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~ 67 (119)
.++++++|++|++++|.++.+|.. +..+++|++|++++|.+ ..+|. . +.+|+.|++++|..
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l 121 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQL 121 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSCC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCcc
Confidence 456666666666666666655543 35566666666666663 33332 1 34556666655443
No 67
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.86 E-value=1.5e-08 Score=64.95 Aligned_cols=82 Identities=24% Similarity=0.272 Sum_probs=59.2
Q ss_pred CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCCccccCcccc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
++|..+ .++|+.|++++|.++.+|+ .+..+++|++|++++|.+. .+|. . +.+|+.|++++|...+..+..+.
T Consensus 21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 97 (177)
T 2o6r_A 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97 (177)
T ss_dssp SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhh
Confidence 456444 3789999999999997776 5799999999999999954 5554 2 57899999999765544343444
Q ss_pred ---CcCceeecCc
Q 046349 77 ---SSYEIDLSCN 86 (119)
Q Consensus 77 ---~l~~l~~~~~ 86 (119)
+++.+++.++
T Consensus 98 ~l~~L~~L~l~~N 110 (177)
T 2o6r_A 98 KLTQLKELALDTN 110 (177)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCcccCEEECcCC
Confidence 4444555443
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.86 E-value=9.8e-09 Score=75.89 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=26.1
Q ss_pred CCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCccccCcCceeecCccCCCcccccch
Q 046349 33 LSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGI 97 (119)
Q Consensus 33 l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~~~~~l~~~~~~~~ 97 (119)
+++|++|++++|+ +..+|.. +++|+.|++++|...+..|..+..+..|. .+++..|...+.
T Consensus 450 l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---~L~l~~N~~~~~ 512 (549)
T 2z81_A 450 LPRLQELYISRNK-LKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ---KIWLHTNPWDCS 512 (549)
T ss_dssp CTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC---EEECCSSCBCCC
T ss_pred CChhcEEECCCCc-cCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccC---EEEecCCCccCC
Confidence 3444444444444 2244432 34455555555444443333344332221 234445554443
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.86 E-value=1.4e-08 Score=69.32 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=33.1
Q ss_pred ccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTV 67 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~ 67 (119)
++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+. .+|. . +++|+.|++++|..
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcC
Confidence 45556666666666666555542 556666666666666532 3332 1 34566666666533
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.86 E-value=9.1e-09 Score=77.41 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=41.5
Q ss_pred hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCccccC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIFS 77 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~~ 77 (119)
.|+++++|++|++++|.++.+|+ .++.+++|++|++++|.+ ..+|.. +++|+.|++++|...+..|..++.
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 169 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence 56666666666666666664443 456666666666666663 344432 355666677666555444444543
No 71
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.85 E-value=8.7e-09 Score=73.15 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=55.6
Q ss_pred cc-CCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCCccccCccccCc
Q 046349 7 LG-QLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 7 ~~-~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
+. ++++|++|++++|.++.+| ..+..+++|++|++++|++ ..+|. . +.+|+.|++++|...+..|..+..+
T Consensus 59 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 135 (361)
T 2xot_A 59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135 (361)
T ss_dssp SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc
Confidence 44 8899999999999999766 4699999999999999984 45544 2 5789999999977665556666543
No 72
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.85 E-value=5.7e-09 Score=78.07 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=33.9
Q ss_pred hccCCCCCCEEeccCCCCcc--CC--hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 6 SLGQLSTLEELFLVKNNFVR--IP--ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~--lP--~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
.++++++|++|++++|.+.. +| ..+..+++|+.|++++|++.+..|.. +++|+.|++++|...+..|..+..+
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 34444445555555444431 11 23444555555555555433333332 2445555555555444444444443
Q ss_pred C
Q 046349 79 Y 79 (119)
Q Consensus 79 ~ 79 (119)
+
T Consensus 524 ~ 524 (606)
T 3t6q_A 524 K 524 (606)
T ss_dssp C
T ss_pred c
Confidence 3
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.85 E-value=1.3e-08 Score=75.78 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=25.4
Q ss_pred cChhccCCCCCCEEeccCCCCccCC---hhhhcCCCCCEEeccCcccccccC
Q 046349 3 LPESLGQLSTLEELFLVKNNFVRIP---ESIMQLSKLKFLNLSYSERLQSLL 51 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~lP---~~~~~l~~L~~L~l~~n~~~~~lp 51 (119)
+|..++++++|++|++++|.++.+| ..++.+++|+.|++++|++.+.+|
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence 3445555555555555555555433 234555555555555555433233
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.85 E-value=3.7e-09 Score=67.93 Aligned_cols=77 Identities=23% Similarity=0.230 Sum_probs=61.0
Q ss_pred hhccCCCCCCEEeccCCCCccCChhh-hcCCCCCEEeccCcccccccCC--C---CCCCceeeccCCCCccccCcc----
Q 046349 5 ESLGQLSTLEELFLVKNNFVRIPESI-MQLSKLKFLNLSYSERLQSLLK--L---PCSLLELDAHHCTVLDTLSGL---- 74 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~lP~~~-~~l~~L~~L~l~~n~~~~~lp~--~---~~~L~~L~l~~~~~~~~lp~~---- 74 (119)
..++.+++|++|++++|.++.+|+.+ ..+++|++|++++|+ ++.+|. . +++|+.|++++|.. ..+|..
T Consensus 58 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~ 135 (176)
T 1a9n_A 58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYV 135 (176)
T ss_dssp CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHH
T ss_pred cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHH
Confidence 46788999999999999999888654 999999999999998 577776 2 57899999999754 466764
Q ss_pred ccCcCceee
Q 046349 75 IFSSYEIDL 83 (119)
Q Consensus 75 ~~~l~~l~~ 83 (119)
+..++.|..
T Consensus 136 ~~~l~~L~~ 144 (176)
T 1a9n_A 136 IYKVPQVRV 144 (176)
T ss_dssp HHHCTTCSE
T ss_pred HHHCCccce
Confidence 554444433
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.85 E-value=6.9e-09 Score=75.71 Aligned_cols=75 Identities=21% Similarity=0.172 Sum_probs=50.7
Q ss_pred ChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349 4 PESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS 78 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l 78 (119)
|..|+++++|++|++++|.++.+|. .+.++++|++|++++|++.+..|.. +.+|+.|++++|...+..|..+..+
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 151 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC
Confidence 5567777788888888887776665 4677778888888887755544543 4567777777765555445555533
No 76
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.85 E-value=7.6e-09 Score=72.26 Aligned_cols=62 Identities=32% Similarity=0.483 Sum_probs=42.9
Q ss_pred hccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCc
Q 046349 6 SLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVL 68 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~ 68 (119)
.++++++|++|++++|.++.+ |..++.+++|++|++++|. +..+|.. ..+|+.|++++|...
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEIT 134 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSCCC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEECCCCccc
Confidence 567777788888877777744 6677777778888887777 4456654 356777777765443
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.85 E-value=1.9e-10 Score=77.11 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=33.6
Q ss_pred hccCCCCCCEEeccCCC-CccCCh-hhhcCCCCCEEeccC-cccccccCC-C---CCCCceeeccCCC
Q 046349 6 SLGQLSTLEELFLVKNN-FVRIPE-SIMQLSKLKFLNLSY-SERLQSLLK-L---PCSLLELDAHHCT 66 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~-l~~lP~-~~~~l~~L~~L~l~~-n~~~~~lp~-~---~~~L~~L~l~~~~ 66 (119)
.++++++|++|++++|. ++.+|+ .+.++++|++|++++ |+ +..+|. . +++|+.|++++|.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTG 116 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEEC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCC
Confidence 45566666666666665 555554 556666666666665 54 334432 1 3455666665543
No 78
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.84 E-value=1.3e-08 Score=72.59 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=37.5
Q ss_pred hccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCcccc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
.++++++|++|++++|.+..+| ..++.+++|++|++++|. +..+|.. +++|++|++++|...+..|..+.
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence 4555666666666666666443 345666666666666665 3344432 34566666666544433333343
No 79
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.83 E-value=3.7e-11 Score=78.73 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=54.5
Q ss_pred CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLS 72 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp 72 (119)
++|..++.+++|++|++++|.++.+| .+..+++|++|++++|. +..+|.. +++|+.|++++|.. ..+|
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l-~~l~ 109 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI-ASLS 109 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEEC-CCHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcC-CcCC
Confidence 35568899999999999999999888 89999999999999998 4577765 36788888887644 3355
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.83 E-value=3.4e-09 Score=82.62 Aligned_cols=76 Identities=20% Similarity=0.109 Sum_probs=49.8
Q ss_pred ChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC-----CCCCceeeccCCCCccccC-cccc
Q 046349 4 PESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL-----PCSLLELDAHHCTVLDTLS-GLIF 76 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-----~~~L~~L~l~~~~~~~~lp-~~~~ 76 (119)
|..|+++++|++|++++|.+. ..|.+++++++|++|++++|.+.+.+|.. +++|+.|++++|...+..| ..++
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 556777777777777777777 34667777777777777777765555442 4567777777766554433 3444
Q ss_pred CcC
Q 046349 77 SSY 79 (119)
Q Consensus 77 ~l~ 79 (119)
+++
T Consensus 146 ~L~ 148 (844)
T 3j0a_A 146 KLN 148 (844)
T ss_dssp TCS
T ss_pred hCC
Confidence 433
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.83 E-value=1.2e-08 Score=74.19 Aligned_cols=61 Identities=23% Similarity=0.161 Sum_probs=32.5
Q ss_pred ChhccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCC
Q 046349 4 PESLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHC 65 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~ 65 (119)
|..|+++++|++|++++|.+..++ ..+.++++|++|++++|++ ..+|.. +++|+.|++++|
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCEEECCSC
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC-CccChhhhcccCCCCEEECCCC
Confidence 344556666666666666666333 4556666666666666653 233321 344555555554
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.83 E-value=1.3e-08 Score=69.41 Aligned_cols=71 Identities=23% Similarity=0.076 Sum_probs=46.4
Q ss_pred hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
.++++++|++|++++|.++.+++ .+..+++|++|++++|.+.+..|.. +.+|+.|++++|...+..+..+.
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 121 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcc
Confidence 56777778888888887775554 6777778888888887744444333 45677888877654443333344
No 83
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.83 E-value=8.4e-09 Score=71.28 Aligned_cols=66 Identities=29% Similarity=0.351 Sum_probs=37.6
Q ss_pred ChhccCCCCCCEEeccCCCCcc--CChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCcc
Q 046349 4 PESLGQLSTLEELFLVKNNFVR--IPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLD 69 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~--lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~ 69 (119)
|..++++++|++|++++|.+.. +|..+..+++|+.|++++|.+.+..|.. +++|+.|++++|...+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 3345556666666666666552 5556666666666666666644433433 3456677776654433
No 84
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.82 E-value=8.2e-09 Score=73.61 Aligned_cols=69 Identities=22% Similarity=0.134 Sum_probs=45.7
Q ss_pred hhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccc
Q 046349 5 ESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLI 75 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~ 75 (119)
..++.+++|++|++++|.+. ..|..+..+++|+.|++++|+ +..+|.. +++|+.|++++|. +..+|..+
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 314 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ 314 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGH
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccc
Confidence 35667777788888877777 446677777777777777777 3444543 4567777777754 33555544
No 85
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.82 E-value=1.8e-08 Score=75.80 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=59.6
Q ss_pred ChhccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcC
Q 046349 4 PESLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSY 79 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~ 79 (119)
|..|+++++|++|++++|.++.+|+. ++.+++|++|++++|.+.+..|.. +++|+.|++++|...+.-+..+.++.
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 195 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCS
T ss_pred HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhh
Confidence 34578999999999999999988876 589999999999999976666654 46799999998765443223344444
Q ss_pred ceee
Q 046349 80 EIDL 83 (119)
Q Consensus 80 ~l~~ 83 (119)
.+++
T Consensus 196 ~L~l 199 (597)
T 3oja_B 196 HANV 199 (597)
T ss_dssp EEEC
T ss_pred hhhc
Confidence 4433
No 86
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.82 E-value=1.5e-08 Score=70.87 Aligned_cols=68 Identities=28% Similarity=0.378 Sum_probs=49.8
Q ss_pred ChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCccccCc
Q 046349 4 PESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLDTLSG 73 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~~lp~ 73 (119)
|..++++++|++|++++|.++.+ |..++.+++|++|++++|+ +..+|.. ..+|++|++++|... .+|.
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l~~n~i~-~~~~ 140 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRIHDNRIR-KVPK 140 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEECCSSCCC-CCCS
T ss_pred HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEECCCCccC-ccCH
Confidence 34678888888888888888844 6678888888888888887 4466654 467888888876543 4443
No 87
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.81 E-value=1.3e-08 Score=71.81 Aligned_cols=59 Identities=29% Similarity=0.303 Sum_probs=29.9
Q ss_pred hccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCC
Q 046349 6 SLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHC 65 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~ 65 (119)
.++++++|++|++++|.++.+ |..++++++|++|++++|++ ..+|.. +++|++|++++|
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEECTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEECCCC
Confidence 355555555555555555533 33455555555555555552 233321 345555555554
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.81 E-value=7.9e-09 Score=76.56 Aligned_cols=73 Identities=26% Similarity=0.276 Sum_probs=36.7
Q ss_pred ChhccCCCCCCEEeccCCCCc--cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349 4 PESLGQLSTLEELFLVKNNFV--RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
|..++++++|++|++++|.+. .+|..+..+++|+.|++++|++.+..|.. +++|+.|++++|...+..|..+.
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 334455555555555555554 35555555555555555555544433433 24556666665544433333343
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.81 E-value=6.9e-09 Score=76.71 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=31.4
Q ss_pred hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCccccc-ccCCC---CCCCceeeccCCCCccccC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQ-SLLKL---PCSLLELDAHHCTVLDTLS 72 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~-~lp~~---~~~L~~L~l~~~~~~~~lp 72 (119)
.|+++++|++|++++|.++.+|+ .++++++|++|++++|.+.+ .+|.. +++|+.|++++|...+.+|
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 34455555555555555554333 25555555555555554322 12222 3445555555544444444
No 90
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.80 E-value=1.8e-08 Score=73.08 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=20.4
Q ss_pred hccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~ 45 (119)
.|+++++|++|++++|.++.++ ..+.++++|++|++++|+
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4455555555555555555333 345555555555555554
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=3.2e-08 Score=67.52 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=40.5
Q ss_pred hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCT 66 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~ 66 (119)
.++.+++|++|++++|.++.+|+ +..+++|+.|++++|+ +..+|.. ..+|+.|++++|.
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~ 117 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNE 117 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSC
T ss_pred HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEEEccCCc
Confidence 56777778888888887777766 7777778888887777 3344433 2556667776654
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.78 E-value=9.4e-09 Score=71.41 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=52.8
Q ss_pred ccCCCCCCEEeccCCCCccCChh----hhcCCCCCEEeccCcccccccCCC---C---CCCceeeccCCCCccccCcccc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPES----IMQLSKLKFLNLSYSERLQSLLKL---P---CSLLELDAHHCTVLDTLSGLIF 76 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~----~~~l~~L~~L~l~~n~~~~~lp~~---~---~~L~~L~l~~~~~~~~lp~~~~ 76 (119)
++.+++|++|++++|.++.+|.. ++.+++|++|++++|.+.+..|.. + ++|+.|++++|... .+|..+.
T Consensus 193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~ 271 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP 271 (310)
T ss_dssp TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc
Confidence 35778888888888888766552 467788888888888866555643 2 47888888876544 6676554
Q ss_pred -CcCceeecCc
Q 046349 77 -SSYEIDLSCN 86 (119)
Q Consensus 77 -~l~~l~~~~~ 86 (119)
+++.|++.+|
T Consensus 272 ~~L~~L~Ls~N 282 (310)
T 4glp_A 272 AKLRVLDLSSN 282 (310)
T ss_dssp SCCSCEECCSC
T ss_pred CCCCEEECCCC
Confidence 4445555433
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.78 E-value=2.2e-08 Score=69.75 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=20.9
Q ss_pred hccCCCCCCEEeccCCCCccC-Chhh-hcCCCCCEEeccCcc
Q 046349 6 SLGQLSTLEELFLVKNNFVRI-PESI-MQLSKLKFLNLSYSE 45 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~l-P~~~-~~l~~L~~L~l~~n~ 45 (119)
.++.+++|++|++++|.+..+ |..+ ..+++|++|++++|.
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 445555666666666665532 2333 245555555555554
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.77 E-value=1.3e-08 Score=68.08 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=48.5
Q ss_pred cChhccCCCCCC---EEeccCC-CCccCCh-hhhcCCCCC-EEeccCcccccccCCC---CCCCceeeccCCCCccccCc
Q 046349 3 LPESLGQLSTLE---ELFLVKN-NFVRIPE-SIMQLSKLK-FLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG 73 (119)
Q Consensus 3 lP~~~~~l~~L~---~L~ls~n-~l~~lP~-~~~~l~~L~-~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~ 73 (119)
+|. ++.+++|+ +|++++| .++.+|+ .+..+++|+ .|++++|++ ..+|.. ..+|+.|++++|..+..+|.
T Consensus 120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTTCEEEEEECTTCTTCCEECT
T ss_pred ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCCCCCCEEEcCCCCCcccCCH
Confidence 555 67777777 8888888 7886665 478888888 888888874 466654 24678888887643445543
No 95
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.77 E-value=4.9e-10 Score=82.11 Aligned_cols=80 Identities=21% Similarity=0.210 Sum_probs=35.4
Q ss_pred CcChhccCCCCCCEEeccCCCCc-cCChhhhcCCCC-------------CEEeccCcccccccCCCCCCCceeeccCCCC
Q 046349 2 ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKL-------------KFLNLSYSERLQSLLKLPCSLLELDAHHCTV 67 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L-------------~~L~l~~n~~~~~lp~~~~~L~~L~l~~~~~ 67 (119)
++|.+++++++|++|++++|.+. .+|.+++.+++| ++|++++|. +..+|..+++|+.|++++|..
T Consensus 25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPELPPHLESLVASCNSL 103 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSCCTTCSEEECCSSCC
T ss_pred hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCCcCCCCEEEccCCcC
Confidence 35666666666666666666655 566555555432 555555555 334444444555555554333
Q ss_pred ccccCccccCcCceee
Q 046349 68 LDTLSGLIFSSYEIDL 83 (119)
Q Consensus 68 ~~~lp~~~~~l~~l~~ 83 (119)
.+ +|..+.+++.+++
T Consensus 104 ~~-lp~~~~~L~~L~l 118 (454)
T 1jl5_A 104 TE-LPELPQSLKSLLV 118 (454)
T ss_dssp SS-CCCCCTTCCEEEC
T ss_pred Cc-cccccCCCcEEEC
Confidence 22 4444334443333
No 96
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.77 E-value=1.9e-08 Score=72.98 Aligned_cols=38 Identities=37% Similarity=0.394 Sum_probs=16.5
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~ 45 (119)
+.++++|++|++++|.++.+|. +..+++|+.|++++|+
T Consensus 181 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNH 218 (440)
T ss_dssp TTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSC
T ss_pred hhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCc
Confidence 3444444444444444444432 3344444444444443
No 97
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.77 E-value=3.9e-08 Score=71.51 Aligned_cols=68 Identities=29% Similarity=0.334 Sum_probs=37.4
Q ss_pred hhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCc
Q 046349 5 ESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG 73 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~ 73 (119)
..|.++++|++|++++|.++.+|+ .+..+++|++|++++|+ +..+|.. +++|+.|++++|+.++.+|.
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 345556666666666666665444 35556666666666665 3334331 34566666665555555554
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.77 E-value=4e-08 Score=74.72 Aligned_cols=88 Identities=30% Similarity=0.327 Sum_probs=62.3
Q ss_pred CCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeeccCCCCccccCccccCcCceeecCccCCC
Q 046349 11 STLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLD 90 (119)
Q Consensus 11 ~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~~~~~l~ 90 (119)
++|++|++++|.++.+| ..+++|+.|++++|+ +..+|..+.+|+.|++++|.. ..+|..+..++.|. .+++.
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L-~~lp~~l~~l~~L~---~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQL-TRLPESLIHLSSET---TVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCC-CSCCGGGGGSCTTC---EEECC
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCC-CcCCHHHhhccccC---EEEec
Confidence 67888888888888777 456788888888887 557777778899999988654 47888777555443 23566
Q ss_pred cccccchHHHHHHHHH
Q 046349 91 RNEARGIVEDALQEIQ 106 (119)
Q Consensus 91 ~~~~~~~~~~~~~~~~ 106 (119)
.|...+.....+..+.
T Consensus 293 ~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 293 GNPLSERTLQALREIT 308 (622)
T ss_dssp SCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHhcc
Confidence 6666665555554443
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.76 E-value=1.2e-08 Score=79.59 Aligned_cols=83 Identities=25% Similarity=0.207 Sum_probs=61.1
Q ss_pred ChhccCCCCCCEEeccCCCCc-cC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcc--cc
Q 046349 4 PESLGQLSTLEELFLVKNNFV-RI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGL--IF 76 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~-~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~--~~ 76 (119)
|..|+++++|++|++++|.+. .+ |..|.++++|++|++++|.+.+..|.. +.+|++|++++|...+.+|.. +.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 567888888999999888544 66 667899999999999999866666765 467889999988777766654 44
Q ss_pred ---CcCceeecCc
Q 046349 77 ---SSYEIDLSCN 86 (119)
Q Consensus 77 ---~l~~l~~~~~ 86 (119)
+++.|++.+|
T Consensus 121 ~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 121 NLKALTRLDLSKN 133 (844)
T ss_dssp SCSSCCEEEEESC
T ss_pred ccCCCCEEECCCC
Confidence 3444555443
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.76 E-value=7.5e-09 Score=72.03 Aligned_cols=71 Identities=18% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCCCCCEEeccCCCCc-cCChhh--hcCCCCCEEeccCcccccccCCC---C-----CCCceeeccCCCCccccCccccC
Q 046349 9 QLSTLEELFLVKNNFV-RIPESI--MQLSKLKFLNLSYSERLQSLLKL---P-----CSLLELDAHHCTVLDTLSGLIFS 77 (119)
Q Consensus 9 ~l~~L~~L~ls~n~l~-~lP~~~--~~l~~L~~L~l~~n~~~~~lp~~---~-----~~L~~L~l~~~~~~~~lp~~~~~ 77 (119)
++++|++|++++|.++ .+|..+ +.+++|++|++++|++.+. |.. + ++|++|++++|...+..|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 7999999999999999 799876 8999999999999996554 653 3 78999999998766655567765
Q ss_pred cCc
Q 046349 78 SYE 80 (119)
Q Consensus 78 l~~ 80 (119)
++.
T Consensus 172 l~~ 174 (312)
T 1wwl_A 172 FPA 174 (312)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.76 E-value=9.1e-09 Score=75.91 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=24.6
Q ss_pred hhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349 5 ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~ 45 (119)
..|+++++|++|++++|.++.+++ ++.+++|++|++++|.
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY 91 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc
Confidence 456666666666666666664333 6666666666666665
No 102
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.75 E-value=1.7e-09 Score=75.66 Aligned_cols=63 Identities=25% Similarity=0.162 Sum_probs=47.5
Q ss_pred hhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCc
Q 046349 5 ESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVL 68 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~ 68 (119)
..+..+++|++|++++|.+..+++ .+..+++|+.|++++|+ +..+|.. +++|+.|++++|...
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCC
Confidence 567788888888888888885554 78888888888888887 4577765 467888888876543
No 103
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.74 E-value=3e-08 Score=75.13 Aligned_cols=81 Identities=27% Similarity=0.275 Sum_probs=59.2
Q ss_pred hhccCCCCCCEEeccCCCCcc-CChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCccccCc-
Q 046349 5 ESLGQLSTLEELFLVKNNFVR-IPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIFSS- 78 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~-lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~~l- 78 (119)
..|+++++|++|++++|.+.. .|..++++++|++|++++|. +..+|.. +.+|++|++++|...+..|..++.+
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 358888999999999999884 46678999999999999998 4556652 5789999999876654444556543
Q ss_pred --CceeecCc
Q 046349 79 --YEIDLSCN 86 (119)
Q Consensus 79 --~~l~~~~~ 86 (119)
+.|++.+|
T Consensus 122 ~L~~L~Ls~n 131 (680)
T 1ziw_A 122 NLITLDLSHN 131 (680)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 44555443
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.73 E-value=5.1e-08 Score=73.50 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCC-------ceeeccCCCCccccCccccCcCce
Q 046349 9 QLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSL-------LELDAHHCTVLDTLSGLIFSSYEI 81 (119)
Q Consensus 9 ~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L-------~~L~l~~~~~~~~lp~~~~~l~~l 81 (119)
.+++|++|++++|.++.+|. +. ++|+.|++++|+ +..+|....+| +.|++++| .+..+|..++.++.|
T Consensus 158 ~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPT 232 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCCCC--------CCEEEECCSS-CCCCCCGGGGGSCTT
T ss_pred cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhhHHHhhhcccccceEEecCCC-cceecCHHHhcCCCC
Confidence 34566666666666666665 44 667777777776 34666533356 77777775 344677776655444
Q ss_pred eecCccCCCcccccchHHHHHHHHHH
Q 046349 82 DLSCNFKLDRNEARGIVEDALQEIQL 107 (119)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~~~~~~~ 107 (119)
.. +++..|...+.....+..+..
T Consensus 233 ~~---L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 233 CT---IILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp EE---EECCSSSCCHHHHHHHHHHHH
T ss_pred CE---EEeeCCcCCCcCHHHHHHhhc
Confidence 33 356667776666666555443
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.72 E-value=9.8e-09 Score=71.58 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=24.4
Q ss_pred hhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349 5 ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~ 45 (119)
..++++++|++|++++|.++.+++ +..+++|++|++++|.
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp HHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE
T ss_pred HHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc
Confidence 355666666666666666664443 6666666666666665
No 106
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.70 E-value=5.5e-08 Score=67.67 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=35.7
Q ss_pred hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT 66 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~ 66 (119)
.+..+++|++|++++|.+..+|+ +..+++|++|++++|+ +..+|.. +.+|+.|++++|.
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC
Confidence 45666666777777666666655 6666666666666666 3334432 3456666666544
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.70 E-value=6.3e-08 Score=66.92 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=14.9
Q ss_pred cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349 8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~ 45 (119)
+.+++|++|++++|.++.+++ +..+++|++|++++|.
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 334444444444444443333 3334444444444433
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.70 E-value=2.3e-08 Score=69.40 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=44.2
Q ss_pred ChhccCCCCCCEEeccCCCCcc---CCh--hhhcCCCCCEEeccCcccccccCC-------CCCCCceeeccCCCCcccc
Q 046349 4 PESLGQLSTLEELFLVKNNFVR---IPE--SIMQLSKLKFLNLSYSERLQSLLK-------LPCSLLELDAHHCTVLDTL 71 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~---lP~--~~~~l~~L~~L~l~~n~~~~~lp~-------~~~~L~~L~l~~~~~~~~l 71 (119)
|..++++++|++|++++|.+.. ++. .++.+++|++|++++|++ ..+|. .+.+|++|++++|...+..
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 3456677777777777777642 322 235677777777777763 33333 1366777777776655555
Q ss_pred Ccccc
Q 046349 72 SGLIF 76 (119)
Q Consensus 72 p~~~~ 76 (119)
|..++
T Consensus 241 p~~~~ 245 (310)
T 4glp_A 241 NPSAP 245 (310)
T ss_dssp CSCCS
T ss_pred hhhHH
Confidence 65544
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.70 E-value=2.2e-08 Score=70.71 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=51.4
Q ss_pred CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccC-ccc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLS-GLI 75 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp-~~~ 75 (119)
+||..+ .+++++|++++|.|+.+|+ +|.++++|++|++++|++.+.+|.. +.++..+...+++.+..+| ..+
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 577766 3678999999999998886 5899999999999999877777753 2344443333334444443 344
Q ss_pred cC
Q 046349 76 FS 77 (119)
Q Consensus 76 ~~ 77 (119)
..
T Consensus 101 ~~ 102 (350)
T 4ay9_X 101 QN 102 (350)
T ss_dssp CC
T ss_pred hh
Confidence 43
No 110
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.70 E-value=1.1e-07 Score=66.33 Aligned_cols=63 Identities=21% Similarity=0.184 Sum_probs=41.3
Q ss_pred ChhccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCC
Q 046349 4 PESLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTV 67 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~ 67 (119)
|..++.+++|++|++++|.++.++ ..+..+++|+.|++++|+ +..+|.. +++|+.|++++|..
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcC
Confidence 455667777777777777777444 367777777777777776 4466654 35677777776543
No 111
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=5.5e-08 Score=68.29 Aligned_cols=65 Identities=28% Similarity=0.267 Sum_probs=52.9
Q ss_pred cC-hhccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC-C--CCCceeeccCCCCc
Q 046349 3 LP-ESLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL-P--CSLLELDAHHCTVL 68 (119)
Q Consensus 3 lP-~~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~-~--~~L~~L~l~~~~~~ 68 (119)
+| ..|+++++|++|+|++|.|+.+| ..|.++++|+.|+|++|++ ..+|.. + ..|+.|++.+|...
T Consensus 47 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 47 LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc-ceeCHHHcccCCceEEEeeCCCcc
Confidence 44 56899999999999999999655 5789999999999999995 556653 2 23999999987653
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.69 E-value=2.4e-08 Score=73.69 Aligned_cols=62 Identities=21% Similarity=0.082 Sum_probs=37.6
Q ss_pred ChhccCCCCCCEEeccCCCCc-cCChhhh-cCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349 4 PESLGQLSTLEELFLVKNNFV-RIPESIM-QLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT 66 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~-~lP~~~~-~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~ 66 (119)
|..++++++|++|++++|.++ ..|..+. .+++|+.|++++|.+. .+|.. +++|+.|++++|.
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK 202 (487)
T ss_dssp GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSC
T ss_pred chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-cccccccCCCCCEEECCCCC
Confidence 445667777777777777777 3555554 5667777777776633 33332 4556666666543
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.68 E-value=5.9e-08 Score=73.81 Aligned_cols=56 Identities=34% Similarity=0.509 Sum_probs=29.2
Q ss_pred cChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeeccC
Q 046349 3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHH 64 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l~~ 64 (119)
+|..+. ++|++|++++|.++.+|. .+++|++|++++|+ +..+|..+++|++|++++
T Consensus 55 lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~ 110 (622)
T 3g06_A 55 LPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFS 110 (622)
T ss_dssp CCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCCCCTTCCEEEECS
T ss_pred cChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCCCCCCCCEEECcC
Confidence 444443 455666666665555554 34555555555555 334444444455555544
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.67 E-value=7.3e-08 Score=67.48 Aligned_cols=69 Identities=25% Similarity=0.237 Sum_probs=48.3
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCccccC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSGLIFS 77 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~~~~~ 77 (119)
+..+++|++|++++|.++.++ .+..+++|+.|++++|+ +..+|.. +++|+.|++++|...+..|..+..
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 677788888888888877663 57778888888888887 3444542 567788888877666555555543
No 115
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.66 E-value=9.9e-08 Score=66.38 Aligned_cols=57 Identities=25% Similarity=0.276 Sum_probs=31.9
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHC 65 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~ 65 (119)
++.+++|++|++++|.++.+| .+..+++|+.|++++|.+ ..+|.. +++|+.|++++|
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLN 139 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSS
T ss_pred HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCC-CCchhhcCCCCCCEEECCCC
Confidence 566666666666666666554 456666666666666653 333332 344555555554
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.65 E-value=9.8e-08 Score=71.98 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=3.4
Q ss_pred CCceeeccC
Q 046349 56 SLLELDAHH 64 (119)
Q Consensus 56 ~L~~L~l~~ 64 (119)
+|+.|++++
T Consensus 161 ~L~~L~Ls~ 169 (571)
T 3cvr_A 161 SLEVLSVRN 169 (571)
T ss_dssp TCCEEECCS
T ss_pred CcCEEECCC
Confidence 333333333
No 117
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.65 E-value=1.3e-07 Score=65.31 Aligned_cols=38 Identities=34% Similarity=0.432 Sum_probs=17.4
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~ 45 (119)
++++++|++|++++|.++.+|. +..+++|++|++++|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNG 123 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSC
T ss_pred cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCc
Confidence 4444444444444444444332 4444444444444444
No 118
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.63 E-value=8.5e-08 Score=67.13 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=52.5
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCc--cccCcCcee
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSG--LIFSSYEID 82 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~--~~~~l~~l~ 82 (119)
++.+++|++|++++|.++.+|. +..+++|+.|++++|. +..++.. +++|+.|++++|... .+|. .+.+++.|+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQIS-DISVLNNLSQLNSLF 293 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEE
T ss_pred hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCccC-CChhhcCCCCCCEEE
Confidence 6778888888888888887776 8888888888888887 4445543 577888888886543 3432 122444454
Q ss_pred ecCc
Q 046349 83 LSCN 86 (119)
Q Consensus 83 ~~~~ 86 (119)
+.+|
T Consensus 294 L~~n 297 (347)
T 4fmz_A 294 LNNN 297 (347)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 4443
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.63 E-value=8e-08 Score=65.55 Aligned_cols=77 Identities=22% Similarity=0.201 Sum_probs=58.1
Q ss_pred hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCccc-cCcCcee
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSGLI-FSSYEID 82 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~~~-~~l~~l~ 82 (119)
.+..+++|++|++++|.++.+| .+..+++|+.|++++|++ ..+|.. +++|+.|++++|... .+|... .+++.|+
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~l~-~l~~~~~~~L~~L~ 112 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNRLK-NLNGIPSACLSRLF 112 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSCCS-CCTTCCCSSCCEEE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCccC-CcCccccCcccEEE
Confidence 4677899999999999999998 799999999999999984 455543 578999999997543 354322 3444444
Q ss_pred ecC
Q 046349 83 LSC 85 (119)
Q Consensus 83 ~~~ 85 (119)
+.+
T Consensus 113 L~~ 115 (263)
T 1xeu_A 113 LDN 115 (263)
T ss_dssp CCS
T ss_pred ccC
Confidence 443
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.58 E-value=9.9e-08 Score=69.90 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=27.0
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCccccc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQ 48 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~ 48 (119)
++.+++|++|++++|.++.+| ++.+++|+.|++++|++.+
T Consensus 208 l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence 566677777777777777666 6666777777777766433
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.58 E-value=2.2e-07 Score=68.02 Aligned_cols=69 Identities=26% Similarity=0.275 Sum_probs=33.5
Q ss_pred CCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeeccCCCCccccCccccCcCceeec
Q 046349 13 LEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLS 84 (119)
Q Consensus 13 L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~ 84 (119)
|++|++++|.++.+| .++.+++|++|++++|+ +..+|..+.+|+.|++++|.. ..+|....+++.+++.
T Consensus 217 L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l-~~l~~~~~~L~~L~ls 285 (454)
T 1jl5_A 217 LESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYL-TDLPELPQSLTFLDVS 285 (454)
T ss_dssp CCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCC-SCCCCCCTTCCEEECC
T ss_pred ccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCcc-cccCcccCcCCEEECc
Confidence 344444444444444 25555666666666665 334555455555555555432 2244444444444443
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.56 E-value=3.4e-07 Score=67.06 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=17.9
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~ 45 (119)
++.+++|++|++++|.++.+| ++.+++|++|++++|.
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK 96 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC
Confidence 444445555555555444443 4444444445444444
No 123
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.56 E-value=2.2e-07 Score=70.41 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=27.7
Q ss_pred hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTV 67 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~ 67 (119)
.++.+++|+.|++++|.+..+| .+..+++|+.|++++|.+ ..++.. +++|+.|++++|..
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGGGGSCTTCSEEECCSSCC
T ss_pred hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCcc-CCchhhcccCCCCEEECcCCcC
Confidence 3444455555555555544432 344555555555555542 222221 34455555555433
No 124
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.55 E-value=2.1e-07 Score=70.56 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=36.1
Q ss_pred hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT 66 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~ 66 (119)
.++.+++|+.|++++|.+..+|+ +..+++|+.|++++|. +..+|.. +.+|+.|++++|.
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC
T ss_pred HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC
Confidence 46667777777777777766655 6666667777666666 3334432 3455566665543
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.53 E-value=5.5e-08 Score=69.27 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=46.5
Q ss_pred hccCCCCCCEEeccCCCC-----ccCChhhhcCCCCCEEeccCcccccc----cCCC-----CCCCceeeccCCCCcc--
Q 046349 6 SLGQLSTLEELFLVKNNF-----VRIPESIMQLSKLKFLNLSYSERLQS----LLKL-----PCSLLELDAHHCTVLD-- 69 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l-----~~lP~~~~~l~~L~~L~l~~n~~~~~----lp~~-----~~~L~~L~l~~~~~~~-- 69 (119)
.+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+.+. +|.. .++|+.|++++|....
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 566777777777777777 45677777777777777777775433 3332 4567777777766554
Q ss_pred --ccCccc
Q 046349 70 --TLSGLI 75 (119)
Q Consensus 70 --~lp~~~ 75 (119)
.+|..+
T Consensus 291 ~~~l~~~l 298 (386)
T 2ca6_A 291 VRTLKTVI 298 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 366554
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=2.5e-09 Score=69.91 Aligned_cols=64 Identities=23% Similarity=0.224 Sum_probs=52.3
Q ss_pred cChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCc
Q 046349 3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVL 68 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~ 68 (119)
+| .++++++|++|++++|.++.+|..+..+++|+.|++++|+ +..+|.. +++|+.|++++|...
T Consensus 63 l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 63 IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHSSEEEESEEECC
T ss_pred cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCCccccCCCCCEEECCCCcCC
Confidence 56 7788899999999999999999888888999999999998 4456643 467899999886543
No 127
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.47 E-value=5.9e-07 Score=65.52 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=17.3
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~ 45 (119)
++.+++|+.|++++|.+..+|+ +..+++|+.|++++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ 298 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc
Confidence 3444444444444444444333 4444444444444444
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.43 E-value=2.1e-07 Score=64.81 Aligned_cols=38 Identities=32% Similarity=0.370 Sum_probs=16.4
Q ss_pred ccCCCCCCEEeccCC-CCc--cCChhhhcCC-CCCEEeccCc
Q 046349 7 LGQLSTLEELFLVKN-NFV--RIPESIMQLS-KLKFLNLSYS 44 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n-~l~--~lP~~~~~l~-~L~~L~l~~n 44 (119)
+.++++|++|++++| .++ .+|..+..++ +|++|++++|
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 333444444444444 443 1333444444 4444444444
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.42 E-value=9.6e-08 Score=66.53 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=27.9
Q ss_pred ccCCCCCCEEeccCCCCc-c-CChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCC
Q 046349 7 LGQLSTLEELFLVKNNFV-R-IPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHC 65 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~-~-lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~ 65 (119)
+..+++|++|++++|.+. . +|..+..+++|++|++++|.+.+..|.. +++|+.|++++|
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 334455555555555544 2 4444555555555555555433333322 334555555554
No 130
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.42 E-value=1.4e-06 Score=63.61 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=28.0
Q ss_pred ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCC-CCCCCceeeccCC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLK-LPCSLLELDAHHC 65 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~-~~~~L~~L~l~~~ 65 (119)
++.+++|+.|++++|.+..+++ ++.+++|+.|++++|++.+..|- .+++|+.|++++|
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence 4445555555555555554443 45555555555555553333321 1344555555554
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.40 E-value=3.9e-07 Score=64.29 Aligned_cols=69 Identities=26% Similarity=0.262 Sum_probs=33.8
Q ss_pred cChhccCCCCCCEEeccC-CCCccCCh-hhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCccccC
Q 046349 3 LPESLGQLSTLEELFLVK-NNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLDTLS 72 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~-n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~~lp 72 (119)
+|..+....+|+.+++++ |.++.+|+ .|..+++|+.|++++|+ +..+|.. +.+|+.|.+.+++.++.+|
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCC
Confidence 344444444455555542 34445553 34555555555555555 3344432 4455555555555555555
No 132
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=8e-07 Score=61.18 Aligned_cols=64 Identities=30% Similarity=0.262 Sum_probs=50.5
Q ss_pred cCCCCCCEEeccCCCCccC---ChhhhcCCCCCEEeccCcccccccCCC--CC--CCceeeccCCCCccccC
Q 046349 8 GQLSTLEELFLVKNNFVRI---PESIMQLSKLKFLNLSYSERLQSLLKL--PC--SLLELDAHHCTVLDTLS 72 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~l---P~~~~~l~~L~~L~l~~n~~~~~lp~~--~~--~L~~L~l~~~~~~~~lp 72 (119)
.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|++. .+.+. +. +|+.|++.+|...+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-CchhhhhcccCCcceEEccCCcCccccC
Confidence 4578999999999999854 467789999999999999854 33322 33 89999999988777666
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.25 E-value=3.3e-07 Score=65.23 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=47.5
Q ss_pred cChhccCCCCCCEEeccCCCCc-c----CChhhhcCCCCCEEeccCcc---cccccCCC----------CCCCceeeccC
Q 046349 3 LPESLGQLSTLEELFLVKNNFV-R----IPESIMQLSKLKFLNLSYSE---RLQSLLKL----------PCSLLELDAHH 64 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~-~----lP~~~~~l~~L~~L~l~~n~---~~~~lp~~----------~~~L~~L~l~~ 64 (119)
++..+..+++|++|++++|.+. . ++..+..+++|+.|++++|. +.+.+|.. .++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 5566677778888888888776 3 23345677888888888763 22344432 36678888887
Q ss_pred CCCcc----ccCcccc
Q 046349 65 CTVLD----TLSGLIF 76 (119)
Q Consensus 65 ~~~~~----~lp~~~~ 76 (119)
|.... .+|..+.
T Consensus 104 n~l~~~~~~~l~~~l~ 119 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLS 119 (386)
T ss_dssp CCCCTTTHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH
Confidence 66554 3555554
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.23 E-value=7.9e-07 Score=62.94 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=30.8
Q ss_pred ccCCCCCCEEeccCCCCccCC-----hhhhcCC-CCCEEeccCcccccccCCC--------CCCCceeeccCCCC
Q 046349 7 LGQLSTLEELFLVKNNFVRIP-----ESIMQLS-KLKFLNLSYSERLQSLLKL--------PCSLLELDAHHCTV 67 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP-----~~~~~l~-~L~~L~l~~n~~~~~lp~~--------~~~L~~L~l~~~~~ 67 (119)
+...++|++|++++|.+...+ ..+..++ +|++|++++|.+.+..+.. ..+|+.|++++|..
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 334444666666666665444 3455555 5666666666533222221 14555555555543
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.05 E-value=1.6e-06 Score=62.72 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=36.1
Q ss_pred CCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCcccccccCCC--------CCCCceeeccCCCCcc----ccCc
Q 046349 11 STLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSERLQSLLKL--------PCSLLELDAHHCTVLD----TLSG 73 (119)
Q Consensus 11 ~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~~~~~lp~~--------~~~L~~L~l~~~~~~~----~lp~ 73 (119)
++|++|++++|.++. +|..+..+++|+.|++++|.+....+.. .++|+.|++++|...+ .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 466777777776652 4555666667777777766543221111 2356666666655443 4554
Q ss_pred cc
Q 046349 74 LI 75 (119)
Q Consensus 74 ~~ 75 (119)
.+
T Consensus 393 ~l 394 (461)
T 1z7x_W 393 TL 394 (461)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.03 E-value=3.1e-06 Score=59.90 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=34.1
Q ss_pred hccCCC-CCCEEeccCCCCcc-CChhhhcC-----CCCCEEeccCcccccccCCC-------C-CCCceeeccCCCC
Q 046349 6 SLGQLS-TLEELFLVKNNFVR-IPESIMQL-----SKLKFLNLSYSERLQSLLKL-------P-CSLLELDAHHCTV 67 (119)
Q Consensus 6 ~~~~l~-~L~~L~ls~n~l~~-lP~~~~~l-----~~L~~L~l~~n~~~~~lp~~-------~-~~L~~L~l~~~~~ 67 (119)
.+.+++ +|++|++++|.+.. .+..+..+ ++|++|++++|.+.+..+.. . ++|+.|++++|..
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 445555 67777777776663 34445543 66666666666643332221 1 4566666666543
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.93 E-value=2.7e-06 Score=61.44 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=18.8
Q ss_pred cCCCCCCEEeccCCCCc-----cCChhhhcCCCCCEEeccCcc
Q 046349 8 GQLSTLEELFLVKNNFV-----RIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~-----~lP~~~~~l~~L~~L~l~~n~ 45 (119)
..+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 67 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc
Confidence 33445555555555544 234444455555555555554
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.84 E-value=1.9e-05 Score=54.27 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=45.8
Q ss_pred cChhccCCCCCCEEeccCCCCccCChhhhcCC--CCCEEeccCcccccccCCC----------CCCCceeec
Q 046349 3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLS--KLKFLNLSYSERLQSLLKL----------PCSLLELDA 62 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~--~L~~L~l~~n~~~~~lp~~----------~~~L~~L~l 62 (119)
+|..++.+++|+.|+|++|.|+.+ ..+..++ +|++|++++|.+.+.+|.. +++|+.||-
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred chhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 456667899999999999999976 3455555 9999999999987777631 466777654
No 139
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=2.4e-05 Score=50.68 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=62.0
Q ss_pred cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccc-----cCCC---CCCCceeeccCCCCccc---
Q 046349 3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQS-----LLKL---PCSLLELDAHHCTVLDT--- 70 (119)
Q Consensus 3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~-----lp~~---~~~L~~L~l~~~~~~~~--- 70 (119)
+|.....-.+|+.||++++.++ .=-..+.++++|+.|++++|..+.. +... ..+|+.|++++|..++.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 5554433457999999999987 2224578999999999999963321 2221 13699999999975432
Q ss_pred --cCccccCcCceeecCccCCCcc
Q 046349 71 --LSGLIFSSYEIDLSCNFKLDRN 92 (119)
Q Consensus 71 --lp~~~~~l~~l~~~~~~~l~~~ 92 (119)
+. ...+++.|++.+|..+...
T Consensus 133 ~~L~-~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 IALH-HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHGG-GCTTCCEEEEESCTTCCCH
T ss_pred HHHh-cCCCCCEEECCCCCCCCch
Confidence 32 3467788999999877653
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=1.1e-05 Score=56.31 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=53.2
Q ss_pred CCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCc-eeeccCCCCccccC-ccccCcCce
Q 046349 10 LSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLL-ELDAHHCTVLDTLS-GLIFSSYEI 81 (119)
Q Consensus 10 l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~-~L~l~~~~~~~~lp-~~~~~l~~l 81 (119)
+++|+.+++++|.++.+|+ +|.++++|+.+++++| +..++.. ..+|+ .+++.+ .+..++ ..|..+..|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 7899999999999998887 6999999999999998 6677774 46688 888886 455565 455544443
No 141
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.51 E-value=0.00016 Score=44.34 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=30.2
Q ss_pred CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCccc
Q 046349 2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSER 46 (119)
Q Consensus 2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~ 46 (119)
++|..+. .+|++|+|++|.|+.+|. .|..+++|+.|+|++|.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4554332 357888888888887776 467788888888888764
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=0.00025 Score=49.37 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=55.3
Q ss_pred cCh-hccCCCCCCEEeccCCCCccCCh-hhhcCCCCC-EEeccCcccccccCCC----CCCCceeeccCCCCccccCc-c
Q 046349 3 LPE-SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLK-FLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG-L 74 (119)
Q Consensus 3 lP~-~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~-~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~-~ 74 (119)
||. .|.++++|+.+++.+| ++.+++ +|.++++|+ .+++.+ . +..++.. +.+|+.+++.++ .+..++. .
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~a 316 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGD-KITTLGDEL 316 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSS-CCCEECTTT
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCC-ccCccchhh
Confidence 454 4889999999999998 887776 799999999 999998 3 6677754 467999999774 4556655 4
Q ss_pred ccCc
Q 046349 75 IFSS 78 (119)
Q Consensus 75 ~~~l 78 (119)
|..+
T Consensus 317 F~~~ 320 (329)
T 3sb4_A 317 FGNG 320 (329)
T ss_dssp TCTT
T ss_pred hcCC
Confidence 4433
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.40 E-value=0.00012 Score=52.40 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=19.1
Q ss_pred CCCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCcc
Q 046349 10 LSTLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 10 l~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~ 45 (119)
.++|++|++++|.++. ++..+...++|++|++++|.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 3455566666655542 33344555556666666555
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.40 E-value=5.4e-05 Score=54.13 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=50.4
Q ss_pred ChhccCCCCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCccccc----ccCCC---CCCCceeeccCCCCcc
Q 046349 4 PESLGQLSTLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSERLQ----SLLKL---PCSLLELDAHHCTVLD 69 (119)
Q Consensus 4 P~~~~~l~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~~~~----~lp~~---~~~L~~L~l~~~~~~~ 69 (119)
+..+...++|++|++++|.+.. ++..+...++|+.|++++|.+.. .++.. .++|+.|++++|....
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 4456778999999999999873 35677888999999999998532 22222 3679999999986543
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.37 E-value=6.5e-05 Score=55.80 Aligned_cols=58 Identities=28% Similarity=0.246 Sum_probs=29.8
Q ss_pred CCCCCCEEeccCCCCc-cCChhhh-cCCCCCEEeccCcccccc--cCC---CCCCCceeeccCCC
Q 046349 9 QLSTLEELFLVKNNFV-RIPESIM-QLSKLKFLNLSYSERLQS--LLK---LPCSLLELDAHHCT 66 (119)
Q Consensus 9 ~l~~L~~L~ls~n~l~-~lP~~~~-~l~~L~~L~l~~n~~~~~--lp~---~~~~L~~L~l~~~~ 66 (119)
.+++|++|++++|.++ ..+..+. .+++|+.|++++|...+. ++. .+++|++|++++|.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 4556666666666655 3333443 456666666666532222 222 13455566655554
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.36 E-value=5.2e-05 Score=56.30 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=49.0
Q ss_pred ccCCCCCCEEeccCCCCc-cCChhhhc-CCCCCEEeccCcccccccCC----CCCCCceeeccCCCCccccC----cccc
Q 046349 7 LGQLSTLEELFLVKNNFV-RIPESIMQ-LSKLKFLNLSYSERLQSLLK----LPCSLLELDAHHCTVLDTLS----GLIF 76 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~-~lP~~~~~-l~~L~~L~l~~n~~~~~lp~----~~~~L~~L~l~~~~~~~~lp----~~~~ 76 (119)
+.++++|+.|++++ .++ ..+..+.. +++|+.|++++|.+.+..+. .+++|+.|++++|...+..+ ..+.
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 45567777777766 555 33344544 77888888888875333221 25678888888877633222 2234
Q ss_pred CcCceeecCcc
Q 046349 77 SSYEIDLSCNF 87 (119)
Q Consensus 77 ~l~~l~~~~~~ 87 (119)
+++.|++.+|.
T Consensus 507 ~L~~L~l~~~~ 517 (594)
T 2p1m_B 507 TMRSLWMSSCS 517 (594)
T ss_dssp GSSEEEEESSC
T ss_pred CCCEEeeeCCC
Confidence 56667777663
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.31 E-value=0.00013 Score=54.28 Aligned_cols=36 Identities=11% Similarity=-0.075 Sum_probs=17.2
Q ss_pred CCCCCEEeccCCCCc--cCChhhhcCCCCCEEeccCcc
Q 046349 10 LSTLEELFLVKNNFV--RIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 10 l~~L~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~ 45 (119)
+++|++|++++|.++ .++..+..+++|+.|++++|.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 444555555555444 233334445555555555554
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.03 E-value=0.00037 Score=44.92 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=18.6
Q ss_pred cCCCCCCEEeccCC-CCcc-----CChhhhcCCCCCEEeccCcc
Q 046349 8 GQLSTLEELFLVKN-NFVR-----IPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 8 ~~l~~L~~L~ls~n-~l~~-----lP~~~~~l~~L~~L~l~~n~ 45 (119)
...+.|++|++++| .+.. +...+...++|++|++++|.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 34455555555555 4431 22334444555555555554
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.03 E-value=0.00097 Score=49.50 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=22.1
Q ss_pred ccCCCCCCEEeccCCCCc-----cCChhhhcCCCCCEEeccCcc
Q 046349 7 LGQLSTLEELFLVKNNFV-----RIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~-----~lP~~~~~l~~L~~L~l~~n~ 45 (119)
+.++++|++|++++|.+. .++..+..+++|+.|++++|.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 344566666666666654 233344556666666666655
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.77 E-value=0.0031 Score=38.46 Aligned_cols=51 Identities=12% Similarity=-0.030 Sum_probs=40.1
Q ss_pred CEEeccCCCCc--cCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCC
Q 046349 14 EELFLVKNNFV--RIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTV 67 (119)
Q Consensus 14 ~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~ 67 (119)
..++-+++.++ .+|..+. .+|+.|+|++|+ +..+|.. +.+|+.|++.+|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 47888999998 8986532 469999999999 6677764 46799999998743
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.54 E-value=0.0016 Score=42.05 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=45.6
Q ss_pred hccCCCCCCEEeccCCC-Cc-cCChhhhcC----CCCCEEeccCcccccc-----cCCCCCCCceeeccCCCCccc
Q 046349 6 SLGQLSTLEELFLVKNN-FV-RIPESIMQL----SKLKFLNLSYSERLQS-----LLKLPCSLLELDAHHCTVLDT 70 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~-l~-~lP~~~~~l----~~L~~L~l~~n~~~~~-----lp~~~~~L~~L~l~~~~~~~~ 70 (119)
.+.++++|+.|+|++|. ++ .-=..+..+ ++|++|++++|..+.. +. .+++|+.|++++|..++.
T Consensus 80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCc
Confidence 36789999999999995 66 222345554 3799999999963211 22 257899999999976543
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.31 E-value=0.0018 Score=41.61 Aligned_cols=64 Identities=22% Similarity=0.176 Sum_probs=47.3
Q ss_pred hhccCCCCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCcccccc----cCCC---CCCCceeec--cCCCCc
Q 046349 5 ESLGQLSTLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSERLQS----LLKL---PCSLLELDA--HHCTVL 68 (119)
Q Consensus 5 ~~~~~l~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~~~~~----lp~~---~~~L~~L~l--~~~~~~ 68 (119)
..+...++|++|++++|.+.. +...+...+.|++|++++|.+... +... ..+|+.|++ ++|...
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 446677899999999999872 455677778999999999985321 2222 357999999 766543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.70 E-value=0.0052 Score=43.77 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=46.1
Q ss_pred CCCCCCEEeccC--CC------CccCChhh--hcCCCCCEEeccCcccccccCC------CCCCCceeeccCCCCccc--
Q 046349 9 QLSTLEELFLVK--NN------FVRIPESI--MQLSKLKFLNLSYSERLQSLLK------LPCSLLELDAHHCTVLDT-- 70 (119)
Q Consensus 9 ~l~~L~~L~ls~--n~------l~~lP~~~--~~l~~L~~L~l~~n~~~~~lp~------~~~~L~~L~l~~~~~~~~-- 70 (119)
.+++|+.|+|+. |. +..+-+.+ ..+++|+.|++.+|.+....+. .+++|+.|+++.|.....
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 688899998853 11 21222222 3578999999998875322211 256799999988654332
Q ss_pred --cCcc---ccCcCceeecCc
Q 046349 71 --LSGL---IFSSYEIDLSCN 86 (119)
Q Consensus 71 --lp~~---~~~l~~l~~~~~ 86 (119)
++.. +.+++.|++..|
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHhhcccCCcceEEECCCC
Confidence 3333 335555665544
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.06 E-value=0.072 Score=38.28 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=37.7
Q ss_pred hccCCCCCCEEeccCCCCc-----cCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccC
Q 046349 6 SLGQLSTLEELFLVKNNFV-----RIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHH 64 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~-----~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~ 64 (119)
.|.++++|+.+++.+|.+. .++. +|.++++|+.+++..+ +..++.. ..+|+.+.+..
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECT
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECc
Confidence 4677888888888777654 3543 6777888888887743 4555553 35566666654
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.88 E-value=0.058 Score=38.76 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=34.8
Q ss_pred hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeecc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAH 63 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~ 63 (119)
.|.++.+|+.+++++|.++.+|......++|+.+.+..+ +..++.. ..+|+.+++.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence 466788888888888877777764333567777777644 4444442 2345555554
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.32 E-value=0.24 Score=35.06 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=37.3
Q ss_pred ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHH 64 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~ 64 (119)
+.++.+|+.+.+..+ ++.+++ +|.++++|+.+++..+ +..++.. ..+|+.+.+..
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence 567788888888654 666654 6788888888888654 4556543 35677777654
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=93.31 E-value=0.077 Score=37.71 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=17.2
Q ss_pred cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349 8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE 45 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~ 45 (119)
..+++|+.|++++|.-..+|. + .+++|+.|++..|.
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB
T ss_pred hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC
Confidence 344555555555542113333 2 25555555555554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.71 E-value=0.19 Score=35.23 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=15.6
Q ss_pred cCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEecc
Q 046349 8 GQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLS 42 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~ 42 (119)
.++.+|+.+.+.++.++.+++ +|.++.+|+.+++.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 334444444444444444332 34444444444443
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.85 E-value=0.35 Score=34.18 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=42.5
Q ss_pred ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG 73 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~ 73 (119)
+.++.+|+.+.+. +.++.+++ +|.++.+|+.+++..+ +..+... ..+|+.+.+..+ +..+..
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~ 350 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKIPE 350 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBCCG
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEEhH
Confidence 5678889998886 55666775 6888899999988765 4556553 356777777542 444443
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.46 E-value=1 Score=31.76 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=19.2
Q ss_pred ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCc
Q 046349 7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYS 44 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n 44 (119)
|.++.+|+.+++..+ ++.+++ +|.++++|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 445555555555432 444443 4555555665555544
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.53 E-value=2.1 Score=30.18 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=52.7
Q ss_pred hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccC------------CCCcc
Q 046349 6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHH------------CTVLD 69 (119)
Q Consensus 6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~------------~~~~~ 69 (119)
.|.++..|+.+.+..+....-..++.++++|+.+.+..+ ...++.. ..+|+.+.+.. |..+.
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence 356788899998876544322346888999999988754 5566664 35677777653 32222
Q ss_pred --ccCccccCcCceeecCccCCCccccc
Q 046349 70 --TLSGLIFSSYEIDLSCNFKLDRNEAR 95 (119)
Q Consensus 70 --~lp~~~~~l~~l~~~~~~~l~~~~~~ 95 (119)
.+|..+.....-.|.+|-+|......
T Consensus 338 ~i~ip~sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 338 RIAIPSSVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp EEEECTTCCBCCGGGGTTCTTCCEEEES
T ss_pred EEEECcccCEEhHhHhhCCCCCCEEEEC
Confidence 23444433333455566666555444
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.92 E-value=1.2 Score=30.98 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=30.2
Q ss_pred cCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeecc
Q 046349 8 GQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAH 63 (119)
Q Consensus 8 ~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~ 63 (119)
.++.+|+.+.+..+ ++.++. .|.++++|+.+.+.++. +..+++. ..+|+.+.+.
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcC
Confidence 34555555555432 444443 56677777777776665 4455543 2456666664
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.61 E-value=0.49 Score=30.87 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=7.7
Q ss_pred hhcCCCCCEEeccCcc
Q 046349 30 IMQLSKLKFLNLSYSE 45 (119)
Q Consensus 30 ~~~l~~L~~L~l~~n~ 45 (119)
+..=+.|+.|+|++|.
T Consensus 66 L~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTA 81 (197)
T ss_dssp HTTCSCCCEEECTTSC
T ss_pred HhhCCCcCEEEccCCC
Confidence 3334445555555554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=79.48 E-value=1.9 Score=27.99 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=41.5
Q ss_pred ccCCCCCCEEeccCCCCc-----cCChhhhcCCCCCEEeccCcccccc----cCCC---CCCCceeeccCC
Q 046349 7 LGQLSTLEELFLVKNNFV-----RIPESIMQLSKLKFLNLSYSERLQS----LLKL---PCSLLELDAHHC 65 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~-----~lP~~~~~l~~L~~L~l~~n~~~~~----lp~~---~~~L~~L~l~~~ 65 (119)
+..=+.|+.|+|++|.+. .+-+.+..=+.|+.|+|+.|.+... +-+. -..|+.|++++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 444578999999999987 2334566778999999999984211 1111 246999999864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.38 E-value=22 Score=20.10 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=19.6
Q ss_pred ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccC
Q 046349 7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSY 43 (119)
Q Consensus 7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~ 43 (119)
|.++++|+.+.+..+ ++.|-. +|.++.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 555666666666543 333332 456666666665554
Done!